Citrus Sinensis ID: 015501
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 405 | 2.2.26 [Sep-21-2011] | |||||||
| O48902 | 437 | Malate dehydrogenase [NAD | N/A | no | 0.972 | 0.901 | 0.826 | 0.0 | |
| P21528 | 441 | Malate dehydrogenase [NAD | N/A | no | 0.950 | 0.873 | 0.839 | 0.0 | |
| Q05145 | 441 | Malate dehydrogenase [NAD | N/A | no | 0.980 | 0.900 | 0.798 | 0.0 | |
| P46489 | 453 | Malate dehydrogenase [NAD | N/A | no | 0.866 | 0.774 | 0.825 | 1e-179 | |
| P17606 | 429 | Malate dehydrogenase [NAD | N/A | no | 0.876 | 0.827 | 0.827 | 1e-176 | |
| P52426 | 435 | Malate dehydrogenase [NAD | N/A | no | 0.960 | 0.894 | 0.753 | 1e-176 | |
| P37229 | 432 | Malate dehydrogenase [NAD | N/A | no | 0.891 | 0.835 | 0.805 | 1e-175 | |
| P15719 | 432 | Malate dehydrogenase [NAD | N/A | no | 0.913 | 0.856 | 0.788 | 1e-174 | |
| Q6MAA3 | 330 | Malate dehydrogenase OS=P | yes | no | 0.755 | 0.927 | 0.545 | 3e-93 | |
| B2UKY5 | 329 | Malate dehydrogenase OS=A | yes | no | 0.760 | 0.936 | 0.530 | 2e-88 |
| >sp|O48902|MDHP_MEDSA Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/398 (82%), Positives = 358/398 (89%), Gaps = 4/398 (1%)
Query: 10 SSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSV--NQVQAPVAVEQDDP 67
++ ++T SSSQLS S L P+ ++ ISCSV NQVQAP AV+ DP
Sbjct: 8 NTCSKTQLHSSSQLSFLSRTLPRHHHCTLAPLHRTQHARISCSVAPNQVQAP-AVQTQDP 66
Query: 68 KSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQP 127
KSK DCYGVFCLTYDLKAEEETKSWKK++ IAVSGAAGMI+NHLLFKLA+GEV GP+QP
Sbjct: 67 KSKP-DCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQP 125
Query: 128 IALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPG 187
IALKLLGSERSLQALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPG
Sbjct: 126 IALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPG 185
Query: 188 MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
MERA LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP+IPAKNFHAL
Sbjct: 186 MERAALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHAL 245
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKE+IKDHKWL
Sbjct: 246 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDHKWL 305
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
EE FTE +QKRGG LI+KWGRSSAAST+VSIVDA++SL+ PTPEGDWFS+GVYT GNPYG
Sbjct: 306 EEEFTEKVQKRGGALIQKWGRSSAASTSVSIVDAIRSLIIPTPEGDWFSTGVYTTGNPYG 365
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKV 405
IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR+++AK
Sbjct: 366 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRQKLAKT 403
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Medicago sativa (taxid: 3879) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 2 |
| >sp|P21528|MDHP_PEA Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2 | Back alignment and function description |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/393 (83%), Positives = 357/393 (90%), Gaps = 8/393 (2%)
Query: 19 SSSQLS-LSSTHLSSLRRR---AFRPIIGPRNPTISCSV--NQVQAPVAVEQDDPKSKTN 72
SSSQLS LS T +L R F P+ ++ ISCSV NQVQ P A QD PK K
Sbjct: 17 SSSQLSFLSRTRTRTLPRHYHSTFAPLHRTQHARISCSVAPNQVQVPAAQTQD-PKGKP- 74
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DCYGVFCLTYDLKAEEETKSWKK++NIAVSGAAGMI+NHLLFKLA+GEV GPDQPIALKL
Sbjct: 75 DCYGVFCLTYDLKAEEETKSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKL 134
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS+QALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPG+ERA
Sbjct: 135 LGSERSIQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGVERAA 194
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252
LLDINGQIFAEQGKALNAVASRN KVIVVGNPCNTNALICLKNAP+IPAKNFHALTRLDE
Sbjct: 195 LLDINGQIFAEQGKALNAVASRNAKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDE 254
Query: 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFT 312
NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKE+IKD+KWLEE FT
Sbjct: 255 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDNKWLEEEFT 314
Query: 313 ETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 372
E +QKRGG+LI+KWGRSSAAST+VSIVDA++SL+TPTPEGDWFSSGVYTNGNPYGIAEDI
Sbjct: 315 EKVQKRGGVLIQKWGRSSAASTSVSIVDAIRSLITPTPEGDWFSSGVYTNGNPYGIAEDI 374
Query: 373 VFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKV 405
VFSMPCRSKGDGDYELV DVIFDDYLR+++AK
Sbjct: 375 VFSMPCRSKGDGDYELVNDVIFDDYLRQKLAKT 407
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|Q05145|MDHP_MESCR Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/407 (79%), Positives = 351/407 (86%), Gaps = 10/407 (2%)
Query: 4 VAQLSPSSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPT----ISCSV--NQVQ 57
VA+LSPS T+L + Q SS R F + PR + I CSV NQVQ
Sbjct: 3 VAELSPSY---KTQLKTCQQLSSSLSTRLSDHRKFSLRLLPRPVSVRGGIRCSVAPNQVQ 59
Query: 58 APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLA 117
APVAV + K +CYG+FCLTYDLKAEEETK+WKKM+ IAVSGAAGMI+NHLLFKLA
Sbjct: 60 APVAVPAEGQTGKP-ECYGIFCLTYDLKAEEETKTWKKMITIAVSGAAGMISNHLLFKLA 118
Query: 118 AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177
+GEV GPDQPIALKLLGSERS ALEGVAMELEDSL+PLLR V IGI+PY++F+DAEWAL
Sbjct: 119 SGEVFGPDQPIALKLLGSERSFNALEGVAMELEDSLYPLLRAVSIGIDPYDIFQDAEWAL 178
Query: 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237
LIGAKPRGPGMERA LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP
Sbjct: 179 LIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 238
Query: 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
+IPAKNFH LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA+I+GLPV
Sbjct: 239 NIPAKNFHGLTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIDGLPV 298
Query: 298 KEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSS 357
K +IKDHKWLEE FT IQKRGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFSS
Sbjct: 299 KTVIKDHKWLEEEFTVMIQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSS 358
Query: 358 GVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
VYTNGNPYGIAED+VFSMPCRSKGDGDYELVKDV+FDDYLR+RI K
Sbjct: 359 AVYTNGNPYGIAEDLVFSMPCRSKGDGDYELVKDVVFDDYLRQRIKK 405
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Mesembryanthemum crystallinum (taxid: 3544) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P46489|MDHP_FLABI Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1 | Back alignment and function description |
|---|
Score = 629 bits (1621), Expect = e-179, Method: Compositional matrix adjust.
Identities = 297/360 (82%), Positives = 330/360 (91%), Gaps = 9/360 (2%)
Query: 48 TISCSV---NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
+I CSV +Q+QAP+ P + +C+GVFCLTYDLKAEEETKSWKK++N+AVSGA
Sbjct: 65 SIRCSVTSSDQIQAPL------PAKQKPECFGVFCLTYDLKAEEETKSWKKIINVAVSGA 118
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV GPDQPI+LKLLGSERS ALEGVAMELEDSL+PLLR+V IGI
Sbjct: 119 AGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGI 178
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+PYE+F+DAEWALLIGAKPRGPGMERA LLDINGQIFAEQGKALNAVAS NVKV+VVGNP
Sbjct: 179 DPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNP 238
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP+IP KNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQV
Sbjct: 239 CNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 298
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKS 344
PDFLNA+I+G+PV E+I+D KWLE+ FT +Q RGG+LIKKWGRSSAASTAVSIVDA++S
Sbjct: 299 PDFLNAKIHGIPVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRS 358
Query: 345 LVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
LVTPTPEGDWFS+GVYTNGNPYGIAEDIVFSMPCRSKGDGDYE VKDVIFDDYL K+I K
Sbjct: 359 LVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKIKK 418
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Flaveria bidentis (taxid: 4224) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P17606|MDHP1_SORBI Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust.
Identities = 298/360 (82%), Positives = 324/360 (90%), Gaps = 5/360 (1%)
Query: 48 TISCSVN---QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
T+ CSV+ QVQ VA + K DC+GVFC TYDLKAE++TKSWKK+VNIAVSGA
Sbjct: 37 TVRCSVDAAKQVQDGVATAEAPATRK--DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGA 94
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI
Sbjct: 95 AGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGI 154
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+PYE+FED +WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNP
Sbjct: 155 DPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 214
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQV
Sbjct: 215 CNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 274
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKS 344
PDFLNA+I+G PVKE+IKD KWLEE FT T+QKRGG LI+KWGRSSAASTAVSI DA+KS
Sbjct: 275 PDFLNAKIDGRPVKEVIKDTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKS 334
Query: 345 LVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
LVTPTPEGDWFS+GVYT GNPYGIAEDIVFSMPCRSKGDGDYEL DV DD+L +RI K
Sbjct: 335 LVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSMDDFLWERIKK 394
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Sorghum bicolor (taxid: 4558) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P52426|MDHP_SPIOL Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 617 bits (1591), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/405 (75%), Positives = 340/405 (83%), Gaps = 16/405 (3%)
Query: 4 VAQLSPSSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIG----PRNPTISCSV--NQVQ 57
VA+LSP T+ + HLS L ++G R I CS+ NQVQ
Sbjct: 3 VAELSPCYQTQIVK---------PPHLSWLSNNHKLNLLGLPKASRITEICCSLAPNQVQ 53
Query: 58 APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLA 117
PVAV +S +CYGVFC TYDLK EEET+SWKKM+ IA+SGAAG I+NHLLFKLA
Sbjct: 54 TPVAVPTGA-QSIKPECYGVFCWTYDLKKEEETRSWKKMITIAISGAAGTISNHLLFKLA 112
Query: 118 AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177
+G V GPDQPIALKLLGSE+S ALEGVAMELEDSL+PLLREV IGI+PYE+FEDAEWAL
Sbjct: 113 SGVVFGPDQPIALKLLGSEKSFHALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAEWAL 172
Query: 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237
LIGAKPRGPGMERA LLDING+I+AEQGKALNAVAS NVKVIVVGNPCNTNALICLKN P
Sbjct: 173 LIGAKPRGPGMERADLLDINGKIYAEQGKALNAVASPNVKVIVVGNPCNTNALICLKNPP 232
Query: 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
+IPAKNFH+LTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDF+NA+I G+PV
Sbjct: 233 NIPAKNFHSLTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFVNAQIGGVPV 292
Query: 298 KEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSS 357
KE+IK KWLEE FTE ++KRGG+LI+KWGRSSAASTAVSIVDA+ L+TPTP GDWF S
Sbjct: 293 KEVIKAQKWLEEEFTEKVRKRGGVLIQKWGRSSAASTAVSIVDAINPLITPTPPGDWFPS 352
Query: 358 GVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402
GVYTNGNPYGIAED+++SMPCRSKGDGDYELVKDVIFDDYLRKRI
Sbjct: 353 GVYTNGNPYGIAEDLIYSMPCRSKGDGDYELVKDVIFDDYLRKRI 397
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P37229|MDHP2_SORBI Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 613 bits (1582), Expect = e-175, Method: Compositional matrix adjust.
Identities = 294/365 (80%), Positives = 323/365 (88%), Gaps = 4/365 (1%)
Query: 44 PRNPTISCSV----NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNI 99
PR T+ CSV QVQ VA + N+C+GVFC YDLKAE++TKSWKK+V I
Sbjct: 33 PRLATVRCSVVDAAKQVQDGVATAVGGGAASGNECFGVFCNIYDLKAEDKTKSWKKLVTI 92
Query: 100 AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLRE 159
AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGV MELEDSL+PLLRE
Sbjct: 93 AVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVRMELEDSLYPLLRE 152
Query: 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219
V IGI PYE+F+D +WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVASRNVKV+
Sbjct: 153 VSIGIGPYEVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNVKVL 212
Query: 220 VVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279
VVGNPCNTNALICLKN P+IPAKNFHALTRLDENRAKCQ+ALKAGVFYDKVSN+TIWGNH
Sbjct: 213 VVGNPCNTNALICLKNTPNIPAKNFHALTRLDENRAKCQIALKAGVFYDKVSNVTIWGNH 272
Query: 280 STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIV 339
STTQVPDFLNA+I+G PVKEII+D KWLEE FT T+QKRGG+LI+KWGRSSAASTAVSIV
Sbjct: 273 STTQVPDFLNAKIDGRPVKEIIQDTKWLEEEFTMTVQKRGGVLIQKWGRSSAASTAVSIV 332
Query: 340 DAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 399
DA+KSLVTPTPEG+WFS+GVYT GNPYGIAEDIVFSMPCRSKGDGDYEL DV DD+L
Sbjct: 333 DAIKSLVTPTPEGEWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSMDDFLW 392
Query: 400 KRIAK 404
+RI K
Sbjct: 393 ERIKK 397
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Sorghum bicolor (taxid: 4558) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P15719|MDHP_MAIZE Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1 | Back alignment and function description |
|---|
Score = 612 bits (1577), Expect = e-174, Method: Compositional matrix adjust.
Identities = 298/378 (78%), Positives = 335/378 (88%), Gaps = 8/378 (2%)
Query: 34 RRRAFRPIIGPRNP--TISCSVN---QVQAPVA--VEQDDPKSKTNDCYGVFCLTYDLKA 86
R R+ +P R P T+ CSV+ Q Q VA V + P S+ +C+GVFC TYDLKA
Sbjct: 21 RCRSAQPRRPRRAPLATVRCSVDATKQAQDGVATAVATEAPASR-KECFGVFCTTYDLKA 79
Query: 87 EEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146
E++TKSW+K+VN+AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVA
Sbjct: 80 EDKTKSWRKLVNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA 139
Query: 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGK 206
MELEDSL+PLLREV IGI+PY +F+D +WALLIGAKPRGPGMERA LLDINGQIFA+QGK
Sbjct: 140 MELEDSLYPLLREVSIGIDPYVVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGK 199
Query: 207 ALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVF 266
ALNAVASRN +V+VVGNPCNTNALICLKNAP+IPAKNFHALTRLDENRAKCQLALKAGVF
Sbjct: 200 ALNAVASRNDEVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVF 259
Query: 267 YDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW 326
YDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IKD KWLEE FT T+QKRGG+LI+KW
Sbjct: 260 YDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKDTKWLEEEFTLTVQKRGGVLIQKW 319
Query: 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDY 386
GRSSAASTAVSIVDA++SLVTPTPEGDWFS+GVYT GNPYGIAEDIVFSMPCRSKGDGDY
Sbjct: 320 GRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDY 379
Query: 387 ELVKDVIFDDYLRKRIAK 404
EL DV+ DD+L +RI K
Sbjct: 380 ELASDVLMDDFLWERIKK 397
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Zea mays (taxid: 4577) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|Q6MAA3|MDH_PARUW Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/306 (54%), Positives = 224/306 (73%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ IA+SG AG IA LLF+LA+GE+ GP+Q I L++L +L ALEGV ME+ED FPL
Sbjct: 5 IKIAISGGAGQIAYSLLFRLASGELFGPNQLIELQVLEVPNALSALEGVKMEIEDCAFPL 64
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L +KI +PY+ FED ++ALLIGAK RGPGMER LL N +IF QG+ALNAVA +
Sbjct: 65 LSSIKICSDPYQAFEDIDYALLIGAKSRGPGMERRDLLQENSKIFVNQGQALNAVAKSSA 124
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
K+ VVGNPCNTN LI L NAPS+ +NF+A+TRLD+NRA L+ K+ V VS +TIW
Sbjct: 125 KIFVVGNPCNTNCLIALNNAPSLKRENFYAMTRLDQNRATFFLSQKSQVSTKDVSCVTIW 184
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336
GNHS TQVPDF+NA+I+ PV+ II D +WLE+ F E++QKRG +I+ G+SSAAS A
Sbjct: 185 GNHSATQVPDFVNAKISQKPVETIIPDRQWLEKDFIESVQKRGAAIIQARGKSSAASAAS 244
Query: 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 396
+++DAM+ + PTP G WFS+ + ++GNPYGI E ++FS PCR K +G+ +V + +D
Sbjct: 245 ALLDAMRDRILPTPTGQWFSTALLSDGNPYGIEEGLIFSFPCRVKKNGELSIVSGLKWDA 304
Query: 397 YLRKRI 402
+L ++I
Sbjct: 305 FLEEKI 310
|
Catalyzes the reversible oxidation of malate to oxaloacetate. Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B2UKY5|MDH_AKKM8 Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/309 (53%), Positives = 220/309 (71%), Gaps = 1/309 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K + + V+GAAG IA LLF++A+G +LGPDQPI L+LL ++ ALEGV MEL D+
Sbjct: 2 KTPITVTVTGAAGQIAYSLLFRIASGSMLGPDQPINLRLLEIPPAMNALEGVVMELRDAA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPL+ E+ +P E F A W LL+G+ PR GMER LLDING++F QG+A+ A+
Sbjct: 62 FPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDINGKVFIGQGQAIARSAA 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++V+V+VVGNPCNTNALI + NA +P+ F A+TRLDENRAK QLA KAGV +V+NM
Sbjct: 122 KDVRVLVVGNPCNTNALIAMHNASGVPSDRFFAMTRLDENRAKSQLAEKAGVHVTEVTNM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
IWGNHS+TQ PDF NARI G PV E+IKD +WL+ F T+Q+RG +IK G SSAAS
Sbjct: 182 AIWGNHSSTQYPDFTNARIGGKPVTEVIKDTEWLKGDFITTVQQRGAAIIKARGASSAAS 241
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A + VD ++SL T TPEGDW+S V ++G+ YGI + ++ S P R+ DG +E+V+ +
Sbjct: 242 AASAAVDTVRSLATQTPEGDWYSVAVCSDGS-YGIEKGLICSFPVRTTKDGGWEIVQGLP 300
Query: 394 FDDYLRKRI 402
D + R++I
Sbjct: 301 VDAFSREKI 309
|
Catalyzes the reversible oxidation of malate to oxaloacetate. Akkermansia muciniphila (strain ATCC BAA-835) (taxid: 349741) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 405 | ||||||
| TAIR|locus:2161188 | 443 | AT5G58330 [Arabidopsis thalian | 0.886 | 0.810 | 0.858 | 2.9e-167 | |
| UNIPROTKB|P0A5J6 | 329 | mdh "Malate dehydrogenase" [My | 0.755 | 0.930 | 0.506 | 3.4e-77 | |
| TIGR_CMR|CBU_1241 | 328 | CBU_1241 "malate dehydrogenase | 0.755 | 0.932 | 0.493 | 1.5e-74 | |
| ZFIN|ZDB-GENE-040204-1 | 333 | mdh1a "malate dehydrogenase 1a | 0.750 | 0.912 | 0.459 | 2.4e-67 | |
| ZFIN|ZDB-GENE-030131-7655 | 333 | mdh1b "malate dehydrogenase 1b | 0.750 | 0.912 | 0.459 | 1.3e-66 | |
| DICTYBASE|DDB_G0280255 | 333 | mdhC "malate dehydrogenase" [D | 0.753 | 0.915 | 0.458 | 2.2e-66 | |
| UNIPROTKB|Q5ZME2 | 334 | MDH1 "Malate dehydrogenase, cy | 0.750 | 0.910 | 0.469 | 3.6e-66 | |
| UNIPROTKB|P11708 | 334 | MDH1 "Malate dehydrogenase, cy | 0.748 | 0.907 | 0.455 | 4.1e-65 | |
| DICTYBASE|DDB_G0292600 | 348 | mdhB "malate dehydrogenase" [D | 0.755 | 0.879 | 0.440 | 6.7e-65 | |
| UNIPROTKB|Q3T145 | 334 | MDH1 "Malate dehydrogenase, cy | 0.750 | 0.910 | 0.459 | 6.7e-65 |
| TAIR|locus:2161188 AT5G58330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1627 (577.8 bits), Expect = 2.9e-167, P = 2.9e-167
Identities = 309/360 (85%), Positives = 335/360 (93%)
Query: 46 NPTISCSVNQ-VQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
N ISCSV+Q QAPVAV+++ +CYGVFCLTYDLKAEEET+SWKK++NIAVSGA
Sbjct: 48 NSKISCSVSQNSQAPVAVQENGLVKTKKECYGVFCLTYDLKAEEETRSWKKLINIAVSGA 107
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV GPDQPIALKLLGSERS+QALEGVAMELEDSLFPLLREV IG
Sbjct: 108 AGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVDIGT 167
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+P E+F+D EWA+LIGAKPRGPGMERA LLDINGQIFAEQGKALN AS NVKV+VVGNP
Sbjct: 168 DPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNVKVLVVGNP 227
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP+IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV
Sbjct: 228 CNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 287
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKS 344
PDFLNARINGLPVKE+I DHKWLEEGFTE++QKRGGLLI+KWGRSSAASTAVSIVDA+KS
Sbjct: 288 PDFLNARINGLPVKEVITDHKWLEEGFTESVQKRGGLLIQKWGRSSAASTAVSIVDAIKS 347
Query: 345 LVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
LVTPTPEGDWFS+GVYT+GNPYGI E +VFSMPCRSKGDGDYELVKDV DDYLR+RIAK
Sbjct: 348 LVTPTPEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYLRQRIAK 407
|
|
| UNIPROTKB|P0A5J6 mdh "Malate dehydrogenase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 156/308 (50%), Positives = 206/308 (66%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ +AV+GAAG I LLF+LA+G +LGPD+PI L+LL E +LQALEGV MEL+D FPL
Sbjct: 6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPL 65
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L V+IG +P ++F+ ALL+GA+PRG GMER+ LL+ NG IF QGKALNAVA+ +V
Sbjct: 66 LSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDV 125
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
+V V GNP NTNALI + NAP IP + F ALTRLD NRA QLA K G + MTIW
Sbjct: 126 RVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIW 185
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336
GNHS TQ PD +A + G E++ D W+E+ F T+ KRG +I G SSAAS A
Sbjct: 186 GNHSATQYPDLFHAEVAGKNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAAS 245
Query: 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 396
+ +DA + + TP DW S V ++G+ YG+ E ++ S P +KG G++ +V + D+
Sbjct: 246 ATIDAARDWLLGTPADDWVSMAVVSDGS-YGVPEGLISSFPVTTKG-GNWTIVSGLEIDE 303
Query: 397 YLRKRIAK 404
+ R RI K
Sbjct: 304 FSRGRIDK 311
|
|
| TIGR_CMR|CBU_1241 CBU_1241 "malate dehydrogenase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 152/308 (49%), Positives = 206/308 (66%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K V +AV+GAAG I LLF+LA+G+ G D + L LL E +L AL+GV MELED F
Sbjct: 3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAF 62
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PLLR + + +P F D WALL+GA PR GMER LL+ NG IFA QGKA+N A+
Sbjct: 63 PLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAAS 122
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
+V++ VVGNPCNTN LI + NAP IP F+A+TRLD+NRA QLALKAGV V NM
Sbjct: 123 DVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMI 182
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334
IWGNHS+TQ PDF +A I+G P E+I+D WL F IQ+RG +IK G SSAAS
Sbjct: 183 IWGNHSSTQYPDFYHATIDGKPATEVIRDKNWLLNDFISVIQQRGAAVIKARGASSAASA 242
Query: 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIF 394
A + +D++ SL+ TP D +S + G YG+ E ++FS PCR++ +G +++++
Sbjct: 243 ANAALDSVWSLINTTPADDNYSVALCAQGQ-YGVDEGLIFSFPCRTE-NGVVSVIEEIEH 300
Query: 395 DDYLRKRI 402
+++ ++++
Sbjct: 301 NEFGQQKL 308
|
|
| ZFIN|ZDB-GENE-040204-1 mdh1a "malate dehydrogenase 1a, NAD (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 143/311 (45%), Positives = 200/311 (64%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G DQPI L LL L L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIAKGDVFGKDQPIILVLLDITPMLPVLDGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + E+ F+D + A+L+G+ PR GMER LL N IF QG+AL A +
Sbjct: 65 LREV-IPTDKVEVGFKDLDAAILVGSMPRKEGMERKDLLKANVAIFKTQGEALEKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRA+ Q+A++ GV D V N+TI
Sbjct: 124 VKVLVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRARSQVAMRVGVPSDSVKNVTI 183
Query: 276 WGNHSTTQVPDFLNARI--NGLPVK--EIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD +A + NG + + + D WL+ F T+Q+RG +IK SSA
Sbjct: 184 WGNHSSTQYPDVHHAIVTRNGKEIAAFDAVNDESWLKGDFISTVQQRGAAVIKARKLSSA 243
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
S A +I D M+ + TP+G+W S G+Y++GN YG+ +D+++S P + K +++V
Sbjct: 244 MSAAKAICDHMRDIWFGTPDGEWVSMGIYSSGNSYGVPDDLMYSFPVKIKNKS-WKVVDG 302
Query: 392 VIFDDYLRKRI 402
+ +D+ R ++
Sbjct: 303 LSINDFSRGKM 313
|
|
| ZFIN|ZDB-GENE-030131-7655 mdh1b "malate dehydrogenase 1b, NAD (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 143/311 (45%), Positives = 199/311 (63%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G DQP+ L LL L LEGV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYGIAKGDVFGKDQPLVLLLLDITPMLPVLEGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + ++ F+D + A+L+G+ PR GMER LL N IF QG+AL+ A +
Sbjct: 65 LREV-IPTDKEDVAFKDLDAAILVGSMPRREGMERKDLLKANVAIFKSQGEALDKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRA Q+AL+ G+ + V N+ I
Sbjct: 124 VKVLVVGNPANTNCLIAAKSAPSIPKENFSCLTRLDHNRASSQVALRCGIAPNNVKNVII 183
Query: 276 WGNHSTTQVPDFLNARINGLPVKEI----IKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD + ++N E +KD WL+ F T+Q+RG +IK SSA
Sbjct: 184 WGNHSSTQYPDVHHCKVNVQGKDETAFDAVKDDAWLKGEFISTVQQRGAAVIKARKLSSA 243
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
S A +I D M+ + T TPEG++ S GVY+ GN YG+ ED+++S P K D ++++V
Sbjct: 244 MSAAKAICDHMRDIWTGTPEGEFISMGVYSTGNSYGVPEDLIYSFPISIK-DKNWKIVDG 302
Query: 392 VIFDDYLRKRI 402
+ +D+ + ++
Sbjct: 303 LPINDFSKAKM 313
|
|
| DICTYBASE|DDB_G0280255 mdhC "malate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 143/312 (45%), Positives = 197/312 (63%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+++N+ ++GAAG IA L+F + G++ G DQ I L LL + + +L+G+ ME++D +
Sbjct: 4 EVINVLITGAAGQIAYSLIFNVCKGDMFGLDQRIKLHLLDIPQMVDSLKGIVMEIQDGAY 63
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PL+ + I + E F +A+L+GA PR GMERA LL N IF QGKAL A++
Sbjct: 64 PLIADTVITADVKEAFTGVHYAILVGAMPRREGMERADLLKANAAIFKVQGKALAEHANK 123
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
NVKV+VVGNP NTNALI +A IP +NF LTRLD+NRAK Q+ALKAGV V N+
Sbjct: 124 NVKVLVVGNPANTNALIAQVSANGIPKENFTCLTRLDQNRAKSQIALKAGVNVKDVHNVI 183
Query: 275 IWGNHSTTQVPDF----LNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSS 330
IWGNHS+TQ PD+ +N P+ IKD KWL+ F T+QKRG +I SS
Sbjct: 184 IWGNHSSTQYPDYRCGYINLSTGKTPISTAIKDEKWLQGEFISTVQKRGAAVIAARKLSS 243
Query: 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 390
AAS A +I D M V T EG++ S GVY++G+ YG+ E ++FS P + +G Y +V+
Sbjct: 244 AASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGS-YGVPEGLIFSFPVKC-ANGKYTIVQ 301
Query: 391 DVIFDDYLRKRI 402
+ DD L K +
Sbjct: 302 GLQMDD-LSKNL 312
|
|
| UNIPROTKB|Q5ZME2 MDH1 "Malate dehydrogenase, cytoplasmic" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 146/311 (46%), Positives = 202/311 (64%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G +QP+ L LL + LEGV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIAKGDVFGKEQPLVLVLLDITPMMTVLEGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A +
Sbjct: 65 LREV-IPTDKEEVAFKDLDIAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRAK Q+ALK GV + V N+ I
Sbjct: 124 VKVVVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTSNDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARIN--G--LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD +A++N G + V E IKD WL+ F T+Q+RG +IK SSA
Sbjct: 184 WGNHSSTQYPDVNHAKVNVKGKEVGVYEAIKDDSWLKGDFILTVQQRGAAVIKARKLSSA 243
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
S A +I D ++ + TP G++ S GV ++GN YG+ ED+++S P K D ++ V+
Sbjct: 244 MSAAKAICDHVRDIWFGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIK-DKTWKFVEG 302
Query: 392 VIFDDYLRKRI 402
+ +D+ R+++
Sbjct: 303 LPINDFSREKM 313
|
|
| UNIPROTKB|P11708 MDH1 "Malate dehydrogenase, cytoplasmic" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 142/312 (45%), Positives = 201/312 (64%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARINGLPVKEI-----IKDHKWLEEGFTETIQKRGGLLIKKWGRSS 330
WGNHS+TQ PD +A++ L KE+ +KD WL+ F T+Q+RG +IK SS
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 390
A S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P K D +++V+
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIK-DKTWKIVE 301
Query: 391 DVIFDDYLRKRI 402
+ +D+ R+++
Sbjct: 302 GLPINDFSREKM 313
|
|
| DICTYBASE|DDB_G0292600 mdhB "malate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 136/309 (44%), Positives = 191/309 (61%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +A++GA+G I LLF++A+G++LG DQPI L+ L ++ +L+GV+MEL+D
Sbjct: 22 KAPVRVAITGASGQIGYQLLFRIASGDMLGKDQPIILQCLELPGAMNSLKGVSMELDDCA 81
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL+ + P E F A++ALL+GA+PR GMER LL N +IF+ QGKAL+ A+
Sbjct: 82 FPLLKGIVQSDKPEEAFAGADYALLVGARPRSKGMERGDLLKANAEIFSVQGKALDKSAN 141
Query: 214 RN-VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 272
R+ ++V+VVGNP NTNALI +NAP+I K F A+TRLD NR QLA K G +
Sbjct: 142 RDTLRVLVVGNPANTNALIAARNAPNIDPKRFSAMTRLDHNRGLAQLADKTGSAVTDIEK 201
Query: 273 MTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332
IWGNHS TQ PD + G + + I D KW+++ F T+Q+RG +I G SSAA
Sbjct: 202 FCIWGNHSATQYPDINFGTVKGKSLVDTINDQKWVKDNFIPTVQQRGAAIIAARGLSSAA 261
Query: 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV 392
S A + +D M+ T G W S +Y+ G YG + + FS P G YE+VK +
Sbjct: 262 SAASAAIDHMRDWTYGT-NGQWTSMAIYSEGE-YGADKGLYFSFPVIVDNKGKYEIVKGL 319
Query: 393 IFDDYLRKR 401
D + ++R
Sbjct: 320 KLDQFSQER 328
|
|
| UNIPROTKB|Q3T145 MDH1 "Malate dehydrogenase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 143/311 (45%), Positives = 201/311 (64%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARIN--G--LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
WGNHS+TQ PD +A++ G + V E +KD WL+ F T+Q+RG +IK SSA
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSA 243
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
S A +I D ++ + TPEG++ S G+ ++GN YGI +D+++S P K D +++V+
Sbjct: 244 MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIK-DKTWKVVEG 302
Query: 392 VIFDDYLRKRI 402
+ +D+ R+++
Sbjct: 303 LPINDFSREKM 313
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48902 | MDHP_MEDSA | 1, ., 1, ., 1, ., 8, 2 | 0.8266 | 0.9728 | 0.9016 | N/A | no |
| A1KI28 | MDH_MYCBP | 1, ., 1, ., 1, ., 3, 7 | 0.5064 | 0.7555 | 0.9300 | yes | no |
| P37229 | MDHP2_SORBI | 1, ., 1, ., 1, ., 8, 2 | 0.8054 | 0.8913 | 0.8356 | N/A | no |
| B0SF41 | MDH_LEPBA | 1, ., 1, ., 1, ., 3, 7 | 0.5208 | 0.7086 | 0.8776 | yes | no |
| Q5SKV7 | MDH_THET8 | 1, ., 1, ., 1, ., 3, 7 | 0.5016 | 0.7555 | 0.9357 | yes | no |
| P46489 | MDHP_FLABI | 1, ., 1, ., 1, ., 8, 2 | 0.825 | 0.8666 | 0.7748 | N/A | no |
| P61977 | MDH_THET2 | 1, ., 1, ., 1, ., 3, 7 | 0.5016 | 0.7555 | 0.9357 | yes | no |
| A5U1T8 | MDH_MYCTA | 1, ., 1, ., 1, ., 3, 7 | 0.5064 | 0.7555 | 0.9300 | yes | no |
| P50917 | MDH_MYCLE | 1, ., 1, ., 1, ., 3, 7 | 0.5064 | 0.7555 | 0.9300 | yes | no |
| P0A5J6 | MDH_MYCTU | 1, ., 1, ., 1, ., 3, 7 | 0.5064 | 0.7555 | 0.9300 | yes | no |
| B2HRH5 | MDH_MYCMM | 1, ., 1, ., 1, ., 3, 7 | 0.5162 | 0.7555 | 0.9300 | yes | no |
| P0A5J7 | MDH_MYCBO | 1, ., 1, ., 1, ., 3, 7 | 0.5064 | 0.7555 | 0.9300 | yes | no |
| P21528 | MDHP_PEA | 1, ., 1, ., 1, ., 8, 2 | 0.8396 | 0.9506 | 0.8730 | N/A | no |
| P52426 | MDHP_SPIOL | 1, ., 1, ., 1, ., 8, 2 | 0.7530 | 0.9604 | 0.8942 | N/A | no |
| Q05145 | MDHP_MESCR | 1, ., 1, ., 1, ., 8, 2 | 0.7985 | 0.9802 | 0.9002 | N/A | no |
| P10584 | MDH_THETH | 1, ., 1, ., 1, ., 3, 7 | 0.5016 | 0.7555 | 0.9357 | yes | no |
| B2UKY5 | MDH_AKKM8 | 1, ., 1, ., 1, ., 3, 7 | 0.5307 | 0.7604 | 0.9361 | yes | no |
| Q6MAA3 | MDH_PARUW | 1, ., 1, ., 1, ., 3, 7 | 0.5457 | 0.7555 | 0.9272 | yes | no |
| B0SN74 | MDH_LEPBP | 1, ., 1, ., 1, ., 3, 7 | 0.5208 | 0.7086 | 0.8776 | yes | no |
| P15719 | MDHP_MAIZE | 1, ., 1, ., 1, ., 8, 2 | 0.7883 | 0.9135 | 0.8564 | N/A | no |
| P17606 | MDHP1_SORBI | 1, ., 1, ., 1, ., 8, 2 | 0.8277 | 0.8765 | 0.8275 | N/A | no |
| A0PVV1 | MDH_MYCUA | 1, ., 1, ., 1, ., 3, 7 | 0.5162 | 0.7555 | 0.9300 | yes | no |
| A9BVK0 | MDH_DELAS | 1, ., 1, ., 1, ., 3, 7 | 0.5015 | 0.7604 | 0.9390 | yes | no |
| C1AMN4 | MDH_MYCBT | 1, ., 1, ., 1, ., 3, 7 | 0.5064 | 0.7555 | 0.9300 | yes | no |
| A0QCI6 | MDH_MYCA1 | 1, ., 1, ., 1, ., 3, 7 | 0.5097 | 0.7555 | 0.9300 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.983 |
| 4th Layer | 1.1.1.82 | 0.979 |
| 3rd Layer | 1.1.1.37 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 405 | |||
| PLN00112 | 444 | PLN00112, PLN00112, malate dehydrogenase (NADP); P | 0.0 | |
| TIGR01757 | 387 | TIGR01757, Malate-DH_plant, malate dehydrogenase, | 0.0 | |
| cd01338 | 322 | cd01338, MDH_choloroplast_like, Chloroplast-like m | 0.0 | |
| TIGR01759 | 323 | TIGR01759, MalateDH-SF1, malate dehydrogenase | 1e-180 | |
| PRK05442 | 326 | PRK05442, PRK05442, malate dehydrogenase; Provisio | 1e-168 | |
| cd00704 | 323 | cd00704, MDH, Malate dehydrogenase | 1e-167 | |
| cd01336 | 325 | cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an | 1e-137 | |
| TIGR01758 | 324 | TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- | 1e-106 | |
| PLN00135 | 309 | PLN00135, PLN00135, malate dehydrogenase | 1e-85 | |
| cd00650 | 263 | cd00650, LDH_MDH_like, NAD-dependent, lactate dehy | 2e-69 | |
| TIGR01756 | 313 | TIGR01756, LDH_protist, lactate dehydrogenase | 4e-66 | |
| COG0039 | 313 | COG0039, Mdh, Malate/lactate dehydrogenases [Energ | 2e-65 | |
| cd05295 | 452 | cd05295, MDH_like, Malate dehydrogenase-like | 9e-59 | |
| pfam02866 | 173 | pfam02866, Ldh_1_C, lactate/malate dehydrogenase, | 1e-48 | |
| pfam00056 | 142 | pfam00056, Ldh_1_N, lactate/malate dehydrogenase, | 4e-43 | |
| PTZ00117 | 319 | PTZ00117, PTZ00117, malate dehydrogenase; Provisio | 8e-13 | |
| cd05294 | 309 | cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas | 7e-12 | |
| cd01339 | 300 | cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik | 4e-11 | |
| PRK06223 | 307 | PRK06223, PRK06223, malate dehydrogenase; Reviewed | 1e-10 | |
| TIGR01763 | 305 | TIGR01763, MalateDH_bact, malate dehydrogenase, NA | 6e-08 | |
| cd00300 | 300 | cd00300, LDH_like, L-lactate dehydrogenase-like en | 8e-07 | |
| cd05290 | 307 | cd05290, LDH_3, A subgroup of L-lactate dehydrogen | 2e-06 | |
| PTZ00325 | 321 | PTZ00325, PTZ00325, malate dehydrogenase; Provisio | 9e-06 | |
| TIGR01772 | 312 | TIGR01772, MDH_euk_gproteo, malate dehydrogenase, | 9e-06 | |
| PRK05086 | 312 | PRK05086, PRK05086, malate dehydrogenase; Provisio | 4e-04 | |
| cd05291 | 306 | cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd | 5e-04 | |
| TIGR01771 | 299 | TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | 0.002 | |
| cd01337 | 310 | cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma | 0.003 |
| >gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Score = 786 bits (2031), Expect = 0.0
Identities = 332/409 (81%), Positives = 360/409 (88%), Gaps = 7/409 (1%)
Query: 2 AVVAQLSPSSYTET-----TRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV 56
VA+LS T +RL SSQL LS THLS+ RRA P N ISCSVNQ
Sbjct: 1 MAVAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQA 60
Query: 57 -QAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFK 115
QAP AV++ K+K +CYGVFCLTYDLKAEEETKSWKK++N+AVSGAAGMI+NHLLFK
Sbjct: 61 SQAPAAVQEKGVKTK-KECYGVFCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFK 119
Query: 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175
LA+GEV GPDQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+F+DAEW
Sbjct: 120 LASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179
Query: 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235
ALLIGAKPRGPGMERA LLDINGQIFAEQGKALN VASRNVKVIVVGNPCNTNALICLKN
Sbjct: 180 ALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKN 239
Query: 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGL 295
AP+IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+INGL
Sbjct: 240 APNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGL 299
Query: 296 PVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWF 355
PVKE+I DHKWLEE FT +QKRGG+LIKKWGRSSAASTAVSI DA+KSLVTPTPEGDWF
Sbjct: 300 PVKEVITDHKWLEEEFTPKVQKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWF 359
Query: 356 SSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
S+GVYT+GNPYGIAE +VFSMPCRSKGDGDYE+VKDV DDYLR+RI K
Sbjct: 360 STGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKK 408
|
Length = 444 |
| >gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Score = 627 bits (1619), Expect = 0.0
Identities = 281/355 (79%), Positives = 312/355 (87%), Gaps = 5/355 (1%)
Query: 52 SVNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIA 109
+ QVQA VA + + T CYGVFCL+YDLK E++ TKSWKK VN+AVSGAAGMI+
Sbjct: 1 AAKQVQAGVATAE---AAATKKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMIS 57
Query: 110 NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169
NHLLF LA+GEV G DQPIALKLLGSERS +ALEGVAMELEDSL+PLLREV IGI+PYE+
Sbjct: 58 NHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEV 117
Query: 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229
FEDA+WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVAS+N KV+VVGNPCNTNA
Sbjct: 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNA 177
Query: 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLN 289
LI +KNAP+IP KNFHALTRLDENRAKCQLALK+G FY VSN+TIWGNHSTTQVPDF+N
Sbjct: 178 LIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVN 237
Query: 290 ARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPT 349
A+I G P KE+IKD KWLEE FT T+QKRGG LIKKWGRSSAASTAVSI DA+KSLV PT
Sbjct: 238 AKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPT 297
Query: 350 PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
PEGDWFS+GVYT+GNPYGIAE +VFSMPCRSKGDGDYEL DV DD+LR+RI K
Sbjct: 298 PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRK 352
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387 |
| >gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Score = 554 bits (1429), Expect = 0.0
Identities = 188/310 (60%), Positives = 226/310 (72%), Gaps = 2/310 (0%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K V +AV+GAAG I LLF++A+GE+ GPDQP+ L+LL ++L+ALEGVAMELED F
Sbjct: 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF 60
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PLL E+ I +P F+DA+WALL+GAKPRGPGMERA LL NG+IF QGKALN VASR
Sbjct: 61 PLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASR 120
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
+VKV+VVGNPCNTNALI +KNAP IP NF A+TRLD NRAK QLA KAGV V NM
Sbjct: 121 DVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMV 180
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334
IWGNHS TQ PDF NA I G P E+I D WLE+ F T+QKRG +IK G SSAAS
Sbjct: 181 IWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSAASA 240
Query: 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIF 394
A + +D M+ V TPEGDWFS V ++G YGI E ++FS P RSKG G YE+V+ +
Sbjct: 241 ANAAIDHMRDWVLGTPEGDWFSMAVPSDG-SYGIPEGLIFSFPVRSKGGG-YEIVEGLEI 298
Query: 395 DDYLRKRIAK 404
DD+ R++I
Sbjct: 299 DDFAREKIDA 308
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322 |
| >gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 504 bits (1301), Expect = e-180
Identities = 183/312 (58%), Positives = 227/312 (72%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
KK V +AV+GAAG I LLF++A+GE+ G DQP+ L LL +++ALEGVAMELED
Sbjct: 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA 60
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL V +P E F+D + ALL+GA PR PGMERA LL NG+IF EQGKALN VA
Sbjct: 61 FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP IP KNF A+TRLD NRAK QLA KAGV V N+
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNV 180
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
IWGNHS TQVPDF +A ++G PVKE+IKD KWLE F T+Q+RG +I+ G SSAAS
Sbjct: 181 IIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A + +D ++ VT TPEGDW S GVY++GNPYGI E I+FS P KGDG++E+V+ +
Sbjct: 241 AANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLP 300
Query: 394 FDDYLRKRIAKV 405
DD++R ++
Sbjct: 301 LDDFVRGKLDAT 312
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323 |
| >gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 474 bits (1223), Expect = e-168
Identities = 169/311 (54%), Positives = 221/311 (71%), Gaps = 2/311 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++A+G++LG DQP+ L+LL +L+ALEGV MEL+D
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL V I +P F+DA+ ALL+GA+PRGPGMER LL+ NG IF QGKALN VA+
Sbjct: 62 FPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAA 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
R+VKV+VVGNP NTNALI +KNAP +PA+NF A+TRLD NRA QLA KAGV + M
Sbjct: 122 RDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
T+WGNHS TQ PDF +A I+G P E+I D WLE+ F T+QKRG +I+ G SSAAS
Sbjct: 182 TVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSAAS 241
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A + +D ++ V TPEGDW S GV ++G+ YGI E ++F P + +G+YE+V+ +
Sbjct: 242 AANAAIDHVRDWVLGTPEGDWVSMGVPSDGS-YGIPEGLIFGFPVTCE-NGEYEIVQGLE 299
Query: 394 FDDYLRKRIAK 404
DD+ R++I
Sbjct: 300 IDDFSREKIDA 310
|
Length = 326 |
| >gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase | Back alignment and domain information |
|---|
Score = 470 bits (1213), Expect = e-167
Identities = 166/311 (53%), Positives = 214/311 (68%), Gaps = 4/311 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+++ ++GAAG I +LLF +A+GE+ G DQP+ L LL +++ALEGV MEL+D FPL
Sbjct: 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL 60
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L+ V I +P E F+D + A+L+GA PR PGMERA LL N +IF EQG+ALN VA V
Sbjct: 61 LKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTV 120
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNALI LKNAP++P KNF ALTRLD NRAK Q+A K GV V N+ IW
Sbjct: 121 KVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIW 180
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDH---KWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
GNHS TQVPD NA + G E + D +WL + F +T+QKRG +IKK G SSAAS
Sbjct: 181 GNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A +I D +K + TP G+ S GVY+ GNPYGI IVFS PC KG G + +V+D+
Sbjct: 241 AAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGG-WHVVEDLK 299
Query: 394 FDDYLRKRIAK 404
+D+LR+++
Sbjct: 300 LNDWLREKLKA 310
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323 |
| >gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Score = 393 bits (1013), Expect = e-137
Identities = 157/310 (50%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL +A G+V GPDQP+ L LL +L+ALEGV MEL+D FPL
Sbjct: 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPL 62
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L+ V +P E F+D + A+L+GA PR GMER LL N +IF EQG+AL+ A +NV
Sbjct: 63 LKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNV 122
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNALI LK APSIP +NF ALTRLD NRAK Q+ALK GV V N+ IW
Sbjct: 123 KVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIW 182
Query: 277 GNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332
GNHS+TQ PD +A + G P +E +KD WL F T+QKRG +IK SSA
Sbjct: 183 GNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSSAM 242
Query: 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV 392
S A +I D + TPEG++ S GVY++G+ YG+ E ++FS P K +G +++V+ +
Sbjct: 243 SAAKAICDHVHDWWFGTPEGEFVSMGVYSDGS-YGVPEGLIFSFPVTCK-NGKWKIVQGL 300
Query: 393 IFDDYLRKRI 402
DD+ R++I
Sbjct: 301 SIDDFSREKI 310
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325 |
| >gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = e-106
Identities = 148/309 (47%), Positives = 198/309 (64%), Gaps = 5/309 (1%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ V+GAAG I LL +A G +LG DQPI L LL +++ LEGV MEL D FPLL
Sbjct: 2 VVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLD 61
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V +P F D + A+L+GA PR GMER LL N +IF EQG+AL+ +A ++ KV
Sbjct: 62 GVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKV 121
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN 278
+VVGNP NTNAL+ APSIP KNF ALTRLD NRA Q+A +AGV V N+ IWGN
Sbjct: 122 LVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGN 181
Query: 279 HSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334
HS+TQ PD +A + PV+E IKD +L+ F T+Q+RG +I+ SSA S
Sbjct: 182 HSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALSA 241
Query: 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIF 394
A + VD M V TPEG + S GVY++G+PYG+ + ++FS P K +G++++V+ +
Sbjct: 242 AKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCK-NGEWKIVEGLCV 300
Query: 395 DDYLRKRIA 403
DD RK++A
Sbjct: 301 DDSSRKKLA 309
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324 |
| >gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 1e-85
Identities = 121/291 (41%), Positives = 173/291 (59%), Gaps = 6/291 (2%)
Query: 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175
+A G +LGPDQP+ L +L + +AL GV MEL D+ FPLL+ V + E +
Sbjct: 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNI 61
Query: 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235
A+++G PR GMER ++ N I+ Q AL A+ + KV+VV NP NTNALI +
Sbjct: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEF 121
Query: 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-- 293
APSIP KN LTRLD NRA Q++ + GV V N+ IWGNHS+TQ PD +A +
Sbjct: 122 APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKTP 181
Query: 294 --GLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPE 351
PV+E++ D WL F T+Q+RG +IK SSA S A S D ++ V TPE
Sbjct: 182 SGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPE 241
Query: 352 GDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402
G W S GVY++G+ YG+ +++S P + G++ +V+ + D++ RK++
Sbjct: 242 GTWVSMGVYSDGS-YGVPPGLIYSFPVTCEK-GEWSIVQGLSIDEFSRKKM 290
|
Length = 309 |
| >gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 2e-69
Identities = 93/308 (30%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-L 157
IAV GA G + L F LA G V I L L + + L+GVAM+L+D++ PL
Sbjct: 1 IAVIGAGGNVGPALAFGLADGSV---LLAIELVLYDIDE--EKLKGVAMDLQDAVEPLAD 55
Query: 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+V I +PYE F+DA+ ++ R PGM R LL N I E G + + +
Sbjct: 56 IKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAW 114
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
+IVV NP + + + + +P + L LD R + LA K GV D V + I G
Sbjct: 115 IIVVSNPVDIITYLVWRYSG-LPKEKVIGLGTLDPIRFRRILAEKLGVDPDDV-KVYILG 172
Query: 278 NHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVS 337
H +QVPD+ RI A S
Sbjct: 173 EHGGSQVPDWSTVRI------------------------------------------ATS 190
Query: 338 IVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 397
I D ++SL+ EG+ GV NG GI +D+V S+PC +G E ++ V D+
Sbjct: 191 IADLIRSLL--NDEGEILPVGVRNNGQ-IGIPDDVVVSVPCIVGKNGVEEPIE-VGLTDF 246
Query: 398 LRKRIAKV 405
+++ K
Sbjct: 247 ELEKLQKS 254
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263 |
| >gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 4e-66
Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 5/296 (1%)
Query: 112 LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171
L +A G++ G ++P+ L LL +L LE +AMELED FP L + E F+
Sbjct: 1 LSHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFK 59
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D + A L+ + P PG RA LL N IF G+AL+ A VKV+V+GNP NTN L+
Sbjct: 60 DIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLV 119
Query: 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 291
+ +AP + A+NF +L LD NRA ++A K V D + ++ +WGNH+ + V D +A
Sbjct: 120 AMLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAE 179
Query: 292 INGLPVKEIIKD---HKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTP 348
+ + D + E F E I +R +++ G +SAAS + + MK+ +
Sbjct: 180 FTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFG 239
Query: 349 TPEGDWFSSGV-YTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403
T G+ S G+ GNPYGI ++FS PC DG +V++ + +L+ ++A
Sbjct: 240 TRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLA 295
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313 |
| >gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 2e-65
Identities = 88/308 (28%), Positives = 150/308 (48%), Gaps = 17/308 (5%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA G + + L F L + LG + L L+ + + + EGVA++L + PL
Sbjct: 3 VAVIGA-GNVGSSLAF-LLLLQGLGSE----LVLI--DINEEKAEGVALDLSHAAAPLGS 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+VKI G YE + A+ ++ PR PGM R LL+ N +I + KA+ A +
Sbjct: 55 DVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAI 113
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
V+VV NP + I +K + + + T LD R + LA K GV V I G
Sbjct: 114 VLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVI-G 172
Query: 278 NHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336
H T VP + A + G P++E++K D + E E ++ G +I+ G + A
Sbjct: 173 EHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAA 232
Query: 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 396
++ +++++ E VY +G YG+ ED+ F +P +G E++ +++ D
Sbjct: 233 ALARMVEAIL--RDEKRVLPVSVYLDGE-YGV-EDVYFGVPAVLGKNGVEEIL-ELLLSD 287
Query: 397 YLRKRIAK 404
++++ K
Sbjct: 288 DEQEKLDK 295
|
Length = 313 |
| >gnl|CDD|133431 cd05295, MDH_like, Malate dehydrogenase-like | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 9e-59
Identities = 108/333 (32%), Positives = 163/333 (48%), Gaps = 24/333 (7%)
Query: 83 DLKAEEETKSWKKMVN---IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL 139
+++ EEE + +N + ++ A+ + HL+ LA+GEV G ++ I++ LL S +L
Sbjct: 109 EVEKEEEEL--RSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENL 166
Query: 140 QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQ 199
+ L+G+ ME+ED FPLLR + + + F+DA +L+ G + G +
Sbjct: 167 EKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVA 226
Query: 200 IFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I G + A +VKVIV G N I +K APSIP KN A+ RL ENRAK
Sbjct: 227 ICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQENRAKAL 286
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGL------------PVKEIIKDHKW 306
LA K V + ++ +WGN D AR+ PV E++ D KW
Sbjct: 287 LARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKW 346
Query: 307 LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 366
+ F T++ L +A S A +I + +P G+ FS GV + G Y
Sbjct: 347 INGEFVATLKSLSSSL----NHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGW-Y 401
Query: 367 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 399
GI E IVFSMP + + G +E+V D+ + LR
Sbjct: 402 GIPEGIVFSMPVKFQN-GSWEVVTDLELSEILR 433
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 452 |
| >gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 1e-48
Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 8/161 (4%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP----VKEIIKD 303
T LD RA+ LA K GV + N+ + G HS TQ PD+ +A++ +P VKE +KD
Sbjct: 1 TTLDTARARTFLAEKFGV-DPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKD 59
Query: 304 HKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 363
W E E +Q G +I+ S+ S A + K+++ T G S GVY +G
Sbjct: 60 TDWELEELIERVQNAGYEVIEAKAGSTTYSMAYAAARIAKAILRGT--GGVLSVGVYLDG 117
Query: 364 NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
YG +DI FS+P DG ++V+ + +D+ R+++ K
Sbjct: 118 Y-YGSPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEK 157
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173 |
| >gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 4e-43
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
V +AV GA G + + L F LA + L + L L+ + EGVAM+L L
Sbjct: 1 VKVAVVGAGGGVGSSLAFALA-LQGLADE----LVLVDINK--DKAEGVAMDLSHGSTFL 53
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
+G + YE +DA+ ++ PR PGM R LL+ N IF + A+ A +
Sbjct: 54 SVPGIVGGDDYEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAP-DA 112
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHA 246
V+VV NP + I K + P + +
Sbjct: 113 IVLVVSNPVDILTYIAWKVSGLPPERVIGS 142
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142 |
| >gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 8e-13
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 10/206 (4%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N YE +D++ ++ R M R LL ING+I +++ N VI V
Sbjct: 64 GTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVK-KYCPNAFVICVT 122
Query: 223 NPCNTNALICLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + IP+ + LD +R +C LA K GV VS + I G H
Sbjct: 123 NPLDCMVKV-FQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVI-GGHGD 180
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR---GGLLIKKWGRSSAA-STAVS 337
VP +NG+P+ + +K E+ E I+K GG ++K + SA + A +
Sbjct: 181 LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAPAAA 240
Query: 338 IVDAMKSLVTPTPEGDWFSSGVYTNG 363
IV +++ + E VY NG
Sbjct: 241 IVAMIEAYL--KDEKRVLVCSVYLNG 264
|
Length = 319 |
| >gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 7e-12
Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 8/234 (3%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ +++ GA+G + + LA +V+ + L+ +SL+ L+G+ +++ D+L
Sbjct: 1 MKVSIIGASGRVGSATALLLAKEDVVK-----EINLISRPKSLEKLKGLRLDIYDALAAA 55
Query: 157 LREVKIGIN-PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
+ +I I+ ++ ++ PR GM R L N +I + K + A + +
Sbjct: 56 GIDAEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI-AEFAPD 114
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
K++VV NP + LK + + F T LD R K +A V +V I
Sbjct: 115 TKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRII 174
Query: 276 WGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRS 329
G H + VP + I G+P+K + + E ET++ G +I G S
Sbjct: 175 -GEHGDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGS 227
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309 |
| >gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 4e-11
Identities = 70/261 (26%), Positives = 113/261 (43%), Gaps = 30/261 (11%)
Query: 143 EGVAMELEDSLFPLLR-EVKI-GINPYELFEDAEWALLIGA-KPRGPGMERAGLLDINGQ 199
+G A+++ + P+L + K+ G N YE ++ ++I A PR PGM R LL N +
Sbjct: 36 QGKALDISQAA-PILGSDTKVTGTNDYEDIAGSD-VVVITAGIPRKPGMSRDDLLGTNAK 93
Query: 200 IFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQL 259
I E + + A N VIVV NP + + K + + LD R + +
Sbjct: 94 IVKEVAENIKKYAP-NAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFI 152
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRG 319
A + GV V M + G H T VP + + G+P+ E+I + ++E T + G
Sbjct: 153 AEELGVSVKDVQAMVL-GGHGDTMVPLPRYSTVGGIPLTELITKEE-IDEIVERT-RNGG 209
Query: 320 GLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 372
++ SA A+ +V+A+ K V P Y G YGI +DI
Sbjct: 210 AEIVNLLKTGSAYYAPAAAIAEMVEAILKDKKRVLPC--------SAYLEGE-YGI-KDI 259
Query: 373 VFSMPCRSKGDGDYELVKDVI 393
+P +G V+ +I
Sbjct: 260 FVGVPVVLGKNG----VEKII 276
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 41/298 (13%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAA---GEVLGPDQPIALKLLGSERSLQALEGVAMELED 151
I++ GA G + L LA G+V+ L +G A+++ +
Sbjct: 1 ARKKISIIGA-GNVGATLAHLLALKELGDVV---------LFD--IVEGVPQGKALDIAE 48
Query: 152 SLFPLLREVKI-GINPYELFEDAEWALLIGAK-PRGPGMERAGLLDINGQIFAEQGKALN 209
+ + KI G N YE ++ ++I A PR PGM R LL IN +I + + +
Sbjct: 49 AAPVEGFDTKITGTNDYEDIAGSD-VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIK 107
Query: 210 AVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL-TRLDENRAKCQLALKAGVFYD 268
A + VIVV NP + + LK P + LD R + +A + V
Sbjct: 108 KYAP-DAIVIVVTNPVDAMTYVALK-ESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVK 165
Query: 269 KVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR 328
V+ + G H + VP + + G+P+++++ K L+E E +K G ++
Sbjct: 166 DVTAFVL-GGHGDSMVPLVRYSTVGGIPLEDLLSKEK-LDE-IVERTRKGGAEIVGLLKT 222
Query: 329 SSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCR 379
SA A++ +V+A+ K V P Y G YG+ +D+ +P +
Sbjct: 223 GSAYYAPAASIAEMVEAILKDKKRVLPC--------SAYLEGE-YGV-KDVYVGVPVK 270
|
Length = 307 |
| >gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-08
Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 27/289 (9%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K L L +EG+ A+++ ++ + K+ G N Y +++ ++
Sbjct: 20 LAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGL 79
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R LL +N I E + S N ++VV NP + + + + +
Sbjct: 80 PRKPGMSREDLLSMNAGIVREVTGRI-MEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKER 138
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++ GV V+ + G H VP + + G+PV ++I
Sbjct: 139 VIGQAGVLDSARFRTFIAMELGVSVQDVTACVL-GGHGDAMVPLVRYSTVAGIPVADLIS 197
Query: 303 DHKWLEEGFTETIQKRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWF 355
+ E E +K GG ++ + SA A++ V +V+A+ + V P
Sbjct: 198 AERIAE--IVERTRKGGGEIVNLLKQGSAYYAPAASVVEMVEAILKDRKRVLPC------ 249
Query: 356 SSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
Y +G YGI + I +P +G E + ++ D + K
Sbjct: 250 --AAYLDGQ-YGI-DGIYVGVPVILGKNG-VEHIYELKLDQSELALLNK 293
|
This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305 |
| >gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 62/260 (23%), Positives = 109/260 (41%), Gaps = 7/260 (2%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+ +A +L+ + + + +G A++L + L + Y DA+ ++ PR
Sbjct: 19 AKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPR 78
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244
PG R L++ N I L + ++VV NP + + K + +
Sbjct: 79 KPGETRLDLINRNAPILRSVITNLKK-YGPDAIILVVSNPVDILTYVAQKLSGLPKNRVI 137
Query: 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH 304
+ T LD R + LA K V V + + G H +QV + A + GLP++E+
Sbjct: 138 GSGTLLDSARFRSLLAEKLDVDPQSV-HAYVLGEHGDSQVVAWSTATVGGLPLEELAPFT 196
Query: 305 KWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 364
K E E ++ G +I+ G ++ A +I D +KS++ E G
Sbjct: 197 KLDLEAIEEEVRTSGYEIIRLKGATNYG-IATAIADIVKSIL--LDERRVLPVSAVQEGQ 253
Query: 365 PYGIAEDIVFSMPCRSKGDG 384
YGI ED+ S+P +G
Sbjct: 254 -YGI-EDVALSVPAVVGREG 271
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 52/238 (21%), Positives = 85/238 (35%), Gaps = 28/238 (11%)
Query: 160 VKIGINPYELFEDAEWALLIGAKPR---GPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
KI Y+ DA+ ++I A P G +R L N +I E + V V
Sbjct: 56 TKIRAGDYDDCADAD-IIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAV 114
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
+I++ NP + I K T LD R + +A K GV V+ +
Sbjct: 115 -IILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVL- 172
Query: 277 GNHSTTQVPDFLNARINGLPVKEI--IKDHKWLEEGFTETIQKRGG---LLIKKWGRSSA 331
G H + P + I GLP+ E+ + + +++ + K W +
Sbjct: 173 GEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTNAGI 232
Query: 332 ASTAVSIVDAMK---SLVTP--TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDG 384
A +A ++ A+ + P T SG Y D+ S+P G
Sbjct: 233 AKSASRLIKAILLDERSILPVCTL-----LSGEYGL-------SDVALSLPTVIGAKG 278
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307 |
| >gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 88/303 (29%), Positives = 122/303 (40%), Gaps = 66/303 (21%)
Query: 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQAL---EGVA 146
S KM +AV GAAG I L + LK SE SL + GVA
Sbjct: 4 SALKMFKVAVLGAAGGIGQPLS--------------LLLKQNPHVSELSLYDIVGAPGVA 49
Query: 147 MELE--DSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQ 204
+L D+ + G + A+ L+ PR PGM R L + N I +
Sbjct: 50 ADLSHIDTP-AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRD- 107
Query: 205 GKALNAVASRNVKVI--VVGNPCNTNALIC---LKNAPSI-PAKNFHALTRLDENRAKCQ 258
+ AVAS K I +V NP N+ I LK A P K F +T LD RA+
Sbjct: 108 --LVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLF-GVTTLDVVRARKF 164
Query: 259 LALKAGVF-YDKVSNMTIWGNHS-TTQVPDFLNARING-LPVKEIIKDHKWLEEGFTETI 315
+A G+ YD N+ + G HS T VP L ++ LP +++ + T +
Sbjct: 165 VAEALGMNPYD--VNVPVVGGHSGVTIVP--LLSQTGLSLPEEQVEQ--------ITHRV 212
Query: 316 QKRGGLLIK-KWGRSSAA-STA-------VSIVDAMKSLVTPT----------PEGDWFS 356
Q G ++K K G SA S A S++ A++ PE +FS
Sbjct: 213 QVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDMRPECPFFS 272
Query: 357 SGV 359
S V
Sbjct: 273 SPV 275
|
Length = 321 |
| >gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 66/273 (24%), Positives = 101/273 (36%), Gaps = 58/273 (21%)
Query: 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL----LGSERSLQALE---GVAMELE 150
+AV GAAG I QP++L L SE SL + GVA +L
Sbjct: 1 KVAVLGAAGGIG----------------QPLSLLLKLQPYVSELSLYDIAGAAGVAADLS 44
Query: 151 DSLFPLLREVKIGINPY-------ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
+ + + A+ ++ PR PGM R L ++N I +
Sbjct: 45 HI------PTAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKD 98
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLA 260
A+ A + ++V+ NP N+ I LK +T LD RA +A
Sbjct: 99 LVAAV-AESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVA 157
Query: 261 LKAGVFYDKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRG 319
G +V N+ + G HS T +P L ++ G + + IQ G
Sbjct: 158 ELKGKDPMEV-NVPVIGGHSGETIIP--LISQCPGKVLFTEDQLEA-----LIHRIQNAG 209
Query: 320 GLLIK-KWGRSSA--------ASTAVSIVDAMK 343
++K K G SA A +S+V +K
Sbjct: 210 TEVVKAKAGAGSATLSMAFAGARFVLSLVRGLK 242
|
This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312 |
| >gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 39/175 (22%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSLQALE----GVAMEL 149
+AV GAAG I Q +AL L GSE SL + GVA++L
Sbjct: 3 VAVLGAAGGIG----------------QALALLLKTQLPAGSELSLYDIAPVTPGVAVDL 46
Query: 150 EDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQI---FAEQ 204
S P ++K G +P E A+ L+ R PGM+R+ L ++N I E+
Sbjct: 47 --SHIPTAVKIKGFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEK 104
Query: 205 GKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAK 256
A + ++ NP NT I LK A +T LD R++
Sbjct: 105 V----AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSE 155
|
Length = 312 |
| >gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 24/246 (9%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
EG A++LED+L L VKI Y +DA+ ++ P+ PG R LL+ N +I
Sbjct: 39 EGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMK 98
Query: 203 EQGKALNAVASRNVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLA 260
+ A + +V NP + T + L P + T LD R + LA
Sbjct: 99 SIVPKIKASGFDGI-FLVASNPVDVITYVVQKLSGLP--KNRVIGTGTSLDTARLRRALA 155
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTET---IQK 317
K V V + G H +Q + + G P+ +++K+ K E E ++K
Sbjct: 156 EKLNVDPRSVHAYVL-GEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRK 214
Query: 318 RGGLLIKKWGRSS--AASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 372
G +I G + A+ IV A+ ++ + P Y +G YG +D+
Sbjct: 215 AGYEIINGKGATYYGIATALARIVKAILNDENAILPV--------SAYLDGE-YGE-KDV 264
Query: 373 VFSMPC 378
+P
Sbjct: 265 YIGVPA 270
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306 |
| >gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 63/265 (23%), Positives = 105/265 (39%), Gaps = 33/265 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
EG AM+L+ + L KI Y +DA+ ++ P+ PG R L+ N +I
Sbjct: 34 AEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIM 93
Query: 202 AEQGKALNAVASR-NVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
V S + +V NP + T L P + + T LD R +
Sbjct: 94 KS--IVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFP--KNRVIGSGTVLDTARLRYL 149
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK- 317
LA K GV + + I G H ++VP + +A I G+P+ + +K + E I+K
Sbjct: 150 LAEKLGV-DPQSVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKE 208
Query: 318 ---RGGLLIKKWGRSS--AASTAVSIVDA----MKSLVTPTPEGDWFSSGVYTNGNPYGI 368
+I + G + IV+A ++ Y +G YGI
Sbjct: 209 VRDAAYEIINRKGATYYGIGMAVARIVEAILHDENRVLP---------VSAYLDGE-YGI 258
Query: 369 AEDIVFSMPCRSKGDGDYELVKDVI 393
+D+ +P +G V+++I
Sbjct: 259 -KDVYIGVPAVLGRNG----VEEII 278
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299 |
| >gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 63/209 (30%), Positives = 85/209 (40%), Gaps = 46/209 (22%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL----LGSERSLQ---ALEGVAMEL 149
V +AV GAAG I QP++L L L SE +L GVA +L
Sbjct: 1 VKVAVLGAAGGIG----------------QPLSLLLKLNPLVSELALYDIVNTPGVAADL 44
Query: 150 EDSLFPLLREVKIGINPYELFEDAEWALLIGAK--------PRGPGMERAGLLDINGQIF 201
S +V G E + A L GA PR PGM R L +IN I
Sbjct: 45 --SHINTPAKVT-GYLGPEELKKA----LKGADVVVIPAGVPRKPGMTRDDLFNINAGIV 97
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALIC----LKNAPSIPAKNFHALTRLDENRAKC 257
+ A+ A A ++++ NP N+ I K P + F +T LD RA
Sbjct: 98 RDLATAV-AKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLF-GVTTLDVVRANT 155
Query: 258 QLALKAGVFYDKVSNMTIWGNHS-TTQVP 285
+A G+ KV N+ + G HS T +P
Sbjct: 156 FVAELLGLDPAKV-NVPVIGGHSGVTILP 183
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 405 | |||
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 100.0 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 100.0 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 100.0 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 100.0 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 100.0 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 100.0 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 100.0 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 100.0 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 100.0 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 100.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 100.0 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PLN02602 | 350 | lactate dehydrogenase | 100.0 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 100.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 100.0 | |
| TIGR01756 | 313 | LDH_protist lactate dehydrogenase. This model repr | 100.0 | |
| PLN00135 | 309 | malate dehydrogenase | 100.0 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 100.0 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 100.0 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 100.0 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 100.0 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 100.0 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 100.0 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 100.0 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 100.0 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 100.0 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 100.0 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 100.0 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 100.0 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 100.0 | |
| PLN00106 | 323 | malate dehydrogenase | 100.0 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 100.0 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 100.0 | |
| PF02866 | 174 | Ldh_1_C: lactate/malate dehydrogenase, alpha/beta | 100.0 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 100.0 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 100.0 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 99.98 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 99.98 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 99.97 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.97 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 99.95 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 99.77 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.39 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.32 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.28 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.14 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.14 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.11 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.1 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.09 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.07 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.02 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.02 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.0 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.98 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 97.95 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 97.93 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.91 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 97.91 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.89 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 97.89 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 97.88 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 97.87 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.81 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.77 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 97.76 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.71 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.71 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.68 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.63 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.61 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.52 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.48 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.43 | |
| PF11975 | 232 | Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term | 97.42 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 97.42 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.38 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.36 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 97.35 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.35 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.33 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.32 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.3 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.3 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.29 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.28 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.28 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.23 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.22 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.2 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.18 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 97.17 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.16 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.13 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 97.13 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.13 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.1 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.07 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 97.05 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.03 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.0 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.97 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.94 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.89 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.85 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 96.82 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.78 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 96.75 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 96.75 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 96.7 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 96.69 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 96.65 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.65 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 96.62 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.6 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 96.58 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 96.57 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 96.53 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 96.51 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.51 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 96.5 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 96.48 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.43 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.43 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.42 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 96.4 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.39 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 96.38 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 96.35 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 96.34 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.32 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.32 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 96.29 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.28 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.26 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 96.26 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.2 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 96.14 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 96.12 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.12 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 96.11 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 96.09 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 96.08 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.07 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.07 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.05 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 96.04 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 96.0 | |
| PLN02256 | 304 | arogenate dehydrogenase | 95.99 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.98 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 95.98 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 95.97 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.96 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.96 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 95.93 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 95.91 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.9 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.88 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 95.87 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 95.86 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 95.83 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.81 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.81 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.79 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 95.77 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.75 | |
| PLN02712 | 667 | arogenate dehydrogenase | 95.71 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 95.69 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 95.68 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 95.67 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 95.67 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.63 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.63 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 95.63 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.62 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 95.62 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.62 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 95.6 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.58 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 95.57 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.56 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.56 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 95.54 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.52 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 95.5 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.5 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.49 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.48 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 95.47 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 95.45 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 95.43 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.42 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.39 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.37 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.37 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 95.36 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 95.35 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 95.35 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 95.28 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 95.27 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 95.27 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.21 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 95.21 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.21 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.2 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.17 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.17 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 95.17 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 95.13 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 95.09 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.07 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 95.04 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 95.04 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 95.02 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.01 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.98 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 94.95 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.93 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.91 | |
| PRK08643 | 256 | acetoin reductase; Validated | 94.91 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 94.89 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 94.89 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 94.87 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 94.85 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 94.81 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 94.8 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 94.79 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 94.78 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.78 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 94.77 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 94.77 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 94.76 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 94.74 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 94.73 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 94.73 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 94.72 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 94.71 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 94.68 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 94.68 | |
| PRK05717 | 255 | oxidoreductase; Validated | 94.67 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 94.67 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 94.66 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.63 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.63 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 94.62 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 94.62 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 94.6 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 94.59 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 94.57 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 94.57 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 94.54 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 94.51 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.5 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 94.5 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 94.48 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 94.47 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.45 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 94.44 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.44 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.44 | |
| PLN02712 | 667 | arogenate dehydrogenase | 94.43 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.42 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 94.42 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 94.4 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 94.4 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 94.4 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 94.39 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 94.36 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 94.34 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 94.3 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.29 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.29 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 94.28 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 94.28 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.27 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.27 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 94.25 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 94.23 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 94.22 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 94.22 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.21 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 94.21 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 94.2 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 94.18 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.17 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 94.16 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.16 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 94.11 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 94.11 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 94.09 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 94.02 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 94.01 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 94.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 94.0 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 93.99 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 93.99 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 93.97 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 93.95 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 93.94 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 93.93 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 93.93 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 93.93 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 93.92 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.88 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 93.88 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 93.87 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 93.86 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 93.86 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 93.82 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 93.82 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 93.81 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.79 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 93.79 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 93.78 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 93.77 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 93.77 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 93.75 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 93.72 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 93.72 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 93.72 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 93.71 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 93.71 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 93.69 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 93.69 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 93.68 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.67 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 93.67 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 93.65 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 93.64 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 93.64 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 93.61 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 93.55 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 93.53 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 93.5 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 93.49 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 93.49 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 93.45 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 93.44 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 93.43 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 93.41 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 93.38 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 93.32 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 93.32 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 93.3 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 93.28 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.27 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 93.27 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 93.26 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 93.24 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 93.22 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 93.2 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 93.2 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 93.19 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 93.16 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 93.12 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 93.11 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 93.1 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 93.09 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 93.08 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 93.04 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 93.04 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.03 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 93.02 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 93.01 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 93.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 92.99 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.97 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.96 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 92.94 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 92.89 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 92.87 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 92.86 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 92.82 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 92.82 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 92.8 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 92.79 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.78 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 92.69 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 92.69 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 92.65 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 92.61 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 92.56 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 92.49 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 92.44 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 92.43 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 92.43 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 92.32 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 92.32 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 92.3 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 92.28 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 92.28 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.22 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 92.22 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 92.17 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 92.15 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 92.12 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 92.08 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 92.08 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 92.05 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 92.05 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 92.04 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 92.03 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 92.02 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 91.99 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 91.96 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 91.86 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 91.83 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 91.82 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 91.78 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 91.77 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 91.76 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 91.75 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 91.71 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 91.66 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 91.63 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 91.63 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 91.56 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 91.54 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 91.5 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 91.49 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 91.49 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 91.47 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 91.43 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 91.39 | |
| PLN02928 | 347 | oxidoreductase family protein | 91.38 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 91.37 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 91.35 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 91.27 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.13 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 91.13 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 91.12 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 91.09 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 91.03 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 90.97 | |
| PLN02494 | 477 | adenosylhomocysteinase | 90.94 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 90.85 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 90.84 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 90.65 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 90.51 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 90.4 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 90.39 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 90.36 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 90.32 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 90.31 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 90.11 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 90.06 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 90.05 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 89.88 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 89.86 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 89.82 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 89.72 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 89.71 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.7 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 89.7 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 89.69 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 89.69 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 89.66 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 89.65 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.46 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 89.39 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 89.37 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 89.37 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.33 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 89.32 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 89.23 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 89.19 | |
| PRK07411 | 390 | hypothetical protein; Validated | 89.15 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 89.13 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 89.1 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 88.98 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.93 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 88.87 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 88.8 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 88.72 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 88.7 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 88.65 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 88.55 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 88.47 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 88.46 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 88.43 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 88.41 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 88.3 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 88.3 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 88.23 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 88.2 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 88.18 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 88.07 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 87.97 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 87.96 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 87.87 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 87.84 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 87.79 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 87.78 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 87.75 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 87.73 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 87.72 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 87.69 | |
| KOG2015 | 422 | consensus NEDD8-activating complex, catalytic comp | 87.67 |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-96 Score=750.65 Aligned_cols=400 Identities=83% Similarity=1.280 Sum_probs=376.0
Q ss_pred eeeecCCC-----ccccceeecccccccccccCcccccccCCCCCCCCCeeEEEeccc-ccccccccCCCcCCCCCccee
Q 015501 4 VAQLSPSS-----YTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV-QAPVAVEQDDPKSKTNDCYGV 77 (405)
Q Consensus 4 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 77 (405)
||+++.+. .+++++++++|+++++++++.|+|+.|+|++|.++++|+|||+++ |+|++|++++++.| ++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (444)
T PLN00112 3 VAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTK-KECYGV 81 (444)
T ss_pred chhccccccccccccchhhccccccccccccccccccccccccccccccceeeccccccCCCccccccccccC-CCceEE
Confidence 45666442 557888999999999999999999999999999999999999999 88888888887666 999999
Q ss_pred eEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc
Q 015501 78 FCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL 157 (405)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~ 157 (405)
||++||+++|+..++|+++.||+||||+|+||+++++.|+.+++++.|+++.++|+++|+++++++|++|||+|+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~ 161 (444)
T PLN00112 82 FCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL 161 (444)
T ss_pred EEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999779999999999999999998888988888899999999999999999987776
Q ss_pred ceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCC
Q 015501 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237 (405)
Q Consensus 158 ~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~ 237 (405)
.++++++++|++++|||+||+++|.||+|||+|.|++..|++|++++++.|+++++|+++||++|||+|+||+++++.++
T Consensus 162 ~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg 241 (444)
T PLN00112 162 REVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAP 241 (444)
T ss_pred CceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcC
Confidence 67888889999999999999999999999999999999999999999999999545999999999999999999999998
Q ss_pred CCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHh
Q 015501 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317 (405)
Q Consensus 238 ~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~ 317 (405)
.+|+|+||+||.||++||+++||+++||++++|++++||||||++|||+||+++|+|+|+.+++.+.+|+.++|.+++++
T Consensus 242 ~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~ 321 (444)
T PLN00112 242 NIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQK 321 (444)
T ss_pred CCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccccchHHHHHHHHHH
Confidence 88789999999999999999999999999999987799999999999999999999999999987777888999999999
Q ss_pred hhHHHHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHH
Q 015501 318 RGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 397 (405)
Q Consensus 318 ~~~~ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~ 397 (405)
+|++|+++||+++|+++|.+++++|++|+.|+|+++|+|+|++++|++||+++|++||+||++|++|+++++++++|+++
T Consensus 322 ~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~ 401 (444)
T PLN00112 322 RGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDY 401 (444)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHH
Confidence 99999999999999899999999999999888999999999999994599989999999999999999999956999999
Q ss_pred HHHHHhh
Q 015501 398 LRKRIAK 404 (405)
Q Consensus 398 E~~~l~~ 404 (405)
|+++|++
T Consensus 402 E~~~l~~ 408 (444)
T PLN00112 402 LRERIKK 408 (444)
T ss_pred HHHHHHH
Confidence 9999975
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-82 Score=639.32 Aligned_cols=348 Identities=79% Similarity=1.259 Sum_probs=325.0
Q ss_pred ccccccccccCCCcCCCCCcceeeEEeeccchhHh--hhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEe
Q 015501 55 QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (405)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l 132 (405)
..|+|+.|.+.+++.. .+||||||++||+++|.+ .++|+++.||+||||+|+||+++|+.|+.++++++|++|.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L 80 (387)
T TIGR01757 2 AKQVQAGVATAEAAAT-KKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKL 80 (387)
T ss_pred chhhhcccchhhHHhh-hcceEEEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3588888666455553 799999999999999988 5788899999999977999999999999999999888999999
Q ss_pred ccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc
Q 015501 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (405)
Q Consensus 133 ~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a 212 (405)
+|+|+++++++|++|||+|+.+++..++++++++|++++|||+||+++|.||+||++|.+++..|++|++++++.|++++
T Consensus 81 ~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a 160 (387)
T TIGR01757 81 LGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVA 160 (387)
T ss_pred eccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999866666788888999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceE
Q 015501 213 SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI 292 (405)
Q Consensus 213 ~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I 292 (405)
+|++++|++|||+|+||+++++.++.+|+|+||+||.||++||+++||+++++++++|++++||||||++|||+||+++|
T Consensus 161 ~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V 240 (387)
T TIGR01757 161 SKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI 240 (387)
T ss_pred CCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE
Confidence 79999999999999999999999987778999999999999999999999999999997679999999999999999999
Q ss_pred cCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcc-cCCCCc
Q 015501 293 NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAED 371 (405)
Q Consensus 293 ~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~-ygi~~d 371 (405)
+|+|+.+++.+.+|+.++|.++++++|++|+++||+++|+++|.+++++|++|+.|+|+++|+|+|++++| + ||+++|
T Consensus 241 ~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~G-e~YGi~~g 319 (387)
T TIGR01757 241 GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDG-NPYGIAEG 319 (387)
T ss_pred CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCC-cccCCCCC
Confidence 99999998876667788999999999999999999999988999999999999988899999999999999 6 999899
Q ss_pred eEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 372 IVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 372 v~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++||+||++|++|+++++.+++|+++|+++|++
T Consensus 320 v~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~ 352 (387)
T TIGR01757 320 LVFSMPCRSKGDGDYELATDVSMDDFLRERIRK 352 (387)
T ss_pred EEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHH
Confidence 999999999999999997459999999999975
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=535.92 Aligned_cols=309 Identities=54% Similarity=0.879 Sum_probs=281.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
|++|+||+||||+|+||+++++.|+.+++++.++++.|.|+|+..+.++++|+++||+|+.+++..+++++.++|++++|
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 57799999999779999999999999999985566778887776667789999999999986665567888899999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchhh
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LD 251 (405)
||+||+++|.|++||++|.+++..|++|++++++.|+++++|++++|++|||+|++|+++++.+|++|+ |+||+ |.||
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 159 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLD 159 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHH
Confidence 999999999999999999999999999999999999999768999999999999999999999978886 88999 9999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchH
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~ 331 (405)
++||+++||+++++++++|++++||||||++|||+||+++|+|+|+.+++.+.+|..+++.+++++++++|++.||+++|
T Consensus 160 s~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 239 (326)
T PRK05442 160 HNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSA 239 (326)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCccH
Confidence 99999999999999999999866799999999999999999999999988766677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+..+..+++++++|+.+.++++++|+|++++| +||+|+|++||+||++| +|+++++.+++|+++|+++|++
T Consensus 240 ~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g-~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~ 310 (326)
T PRK05442 240 ASAANAAIDHVRDWVLGTPEGDWVSMGVPSDG-SYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDA 310 (326)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEecC-ccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHH
Confidence 75444478888888843228999999999999 89999999999999999 9999998679999999999985
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-69 Score=532.35 Aligned_cols=309 Identities=58% Similarity=0.919 Sum_probs=280.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
++|.||+||||+|+||+++++.|+.+++++.+.++.|.|+|+..+.++++|+++||+|+.+++..+++++.++|++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 46899999997799999999999999998855566777776655567799999999999866655677878999999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCC-CeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchhh
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p-~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LD 251 (405)
|+||+++|.||+|||+|.+++..|++|++++++.|+++| | ++++|++|||+|+||+++++.++++|+ |+||+ |.||
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~-~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 158 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVA-KKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLD 158 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHH
Confidence 999999999999999999999999999999999999997 7 999999999999999999999956776 88987 9999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchH
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~ 331 (405)
|+|||++||+++|+++++|++.+||||||++|||+||+++|+|+|+.+++.+++|+.+++.+++++++++|++.||+++|
T Consensus 159 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 238 (323)
T TIGR01759 159 HNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSA 238 (323)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCcch
Confidence 99999999999999999998778999999999999999999999999988765566789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++.|.++++++++|+...++++++|+|++++|++||+|+|+|||+||++|++|+++++++++|+++|+++|++
T Consensus 239 ~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~ 311 (323)
T TIGR01759 239 ASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDA 311 (323)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHH
Confidence 8788999999999994322399999999999956999889999999999999999999669999999999975
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-69 Score=522.40 Aligned_cols=293 Identities=28% Similarity=0.424 Sum_probs=267.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (405)
+||+|||| |+||+++++.|+..++.. ++.| +|+++++++|.++||.|+.+.....+.++. ++|++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~---el~L----iDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGS---ELVL----IDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccc---eEEE----EEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 59999996 999999999997666543 3554 566689999999999999866656677766 67999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~ 255 (405)
||+++|.||||||+|.||+..|++||+++++.+.++| |+++++++|||+|+|||+++|.++..++|+||++|.||++||
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~ 151 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARF 151 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999996543588999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhh-hccccHHHHHHHHHhhhHHHHHhcCCchHHHH
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~-~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~ 334 (405)
+++||+++|+++++|++ +|+||||++|||+||+++|+|+|+.+++. ++.|..+++.+.|+++|++|++.||..+++++
T Consensus 152 ~~~lae~~~v~~~~V~~-~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~ 230 (313)
T COG0039 152 RTFLAEKLGVSPKDVHA-YVIGEHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYGP 230 (313)
T ss_pred HHHHHHHhCCChhHcee-eEeccCCCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCccchhhH
Confidence 99999999999999996 89999999999999999999999999987 56678899999999999999999987455569
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 335 A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.+++++.++|+ .|+++|+|++++++| +|| ++|+|||+||++|++|++++++ ++|+++||++|++
T Consensus 231 A~a~a~~~~ail--~d~~~vl~~s~~l~G-~yg-~~dv~~gvP~~lg~~Gv~~iie-~~l~~~E~~~l~~ 295 (313)
T COG0039 231 AAALARMVEAIL--RDEKRVLPVSVYLDG-EYG-VEDVYFGVPAVLGKNGVEEILE-LLLSDDEQEKLDK 295 (313)
T ss_pred HHHHHHHHHHHH--cCCCceEEEEEeecC-ccC-cCCeEEEeeEEEcCCCcEEEec-CCCCHHHHHHHHH
Confidence 999999999999 688999999999999 799 4899999999999999999995 9999999999975
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-68 Score=539.51 Aligned_cols=312 Identities=30% Similarity=0.444 Sum_probs=286.8
Q ss_pred chhHh-hhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe
Q 015501 85 KAEEE-TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG 163 (405)
Q Consensus 85 ~~~~~-~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~ 163 (405)
.+|++ .+++++|.+|+|+||+|++|+++++.|+++++||.|++|.|+|+|++.+.++++|++|||+|++++++..++++
T Consensus 111 ~~e~~~~~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~ 190 (452)
T cd05295 111 EKEEEELRSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT 190 (452)
T ss_pred HHHHHHHhcCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE
Confidence 44555 46788899999999999999999999999999999999999998887788999999999999998887778888
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCC--CeEEEEeCCchhHHHHHHHHHCCCCCC
Q 015501 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGNPCNTNALICLKNAPSIPA 241 (405)
Q Consensus 164 ~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p--~a~vIvvtNP~d~~t~~~~k~s~~~~~ 241 (405)
+++|++++|||+||+++|.||+|||+|.|++..|++|++++++.|+++| | ++++|++|||+|++|+++++++|++|+
T Consensus 191 ~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a-~~~~~VlVv~tNPvD~~t~i~~k~apgiP~ 269 (452)
T cd05295 191 TDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNA-KEDVKVIVAGRTFLNLKTSILIKYAPSIPR 269 (452)
T ss_pred ECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEeCCcHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999999999999999999999999999999998 7 788999999999999999999988997
Q ss_pred -CceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcC------------cchHhhhhhccccH
Q 015501 242 -KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING------------LPVKEIIKDHKWLE 308 (405)
Q Consensus 242 -k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G------------~p~~~~~~~~~~~~ 308 (405)
|+||++| ||++|++++||+++||++++|++++||||||++|||+||+++|+| +|+.+++.+++|+.
T Consensus 270 ~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~ 348 (452)
T cd05295 270 KNIIAVAR-LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWIN 348 (452)
T ss_pred HHEEEecc-hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhH
Confidence 7788888 779999999999999999999888999999999999999999988 99999987777888
Q ss_pred HHHHHHHHhhhHHHHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceee
Q 015501 309 EGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 388 (405)
Q Consensus 309 ~el~~~v~~~~~~ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~i 388 (405)
+++.+.++++++ .++|. +++++|.++++++++|+.++++++|+|+||+++| +||+|+|++||+||+++++|++.+
T Consensus 349 ~~~~~~v~~rg~---~rkgs-T~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG-~YGip~gv~~S~Pviig~~Gve~V 423 (452)
T cd05295 349 GEFVATLKSLSS---SLNHE-AAISPAHAIATTLSYWYHGSPPGEIFSLGVISEG-WYGIPEGIVFSMPVKFQNGSWEVV 423 (452)
T ss_pred HHHHHHHHHHHH---hccCC-hHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeecc-ccCCcCCEEEEEEEEEeCCeEEEE
Confidence 899999999988 45554 4556999999999999976556899999999999 899999999999999999999887
Q ss_pred ecCCCCCHHHHHHHhh
Q 015501 389 VKDVIFDDYLRKRIAK 404 (405)
Q Consensus 389 v~~~~L~~~E~~~l~~ 404 (405)
. +++|+++|+++|++
T Consensus 424 ~-~L~L~e~E~~kL~~ 438 (452)
T cd05295 424 T-DLELSEILREVLKR 438 (452)
T ss_pred e-CCCCCHHHHHHHHH
Confidence 7 69999999999975
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=491.84 Aligned_cols=310 Identities=50% Similarity=0.751 Sum_probs=302.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
|+++.+|.|.||+|+||+++++.++.+.+||+|||+.|+|+|+.+..+.|+|+.|+|+|+++|++..+..+++..++|+|
T Consensus 1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhcc
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhH
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs 252 (405)
.|+.|+.|+.||++||+|.|++..|.+|+++.++++++|++|+++|++++||+|+++.++.+++|.+|.++|...|+||.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDh 160 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDH 160 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcC----cchHhhhhhccccHHHHHHHHHhhhHHHHHhcCC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G----~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~ 328 (405)
+|+..|||.++||+.++|++++|||||+.+|+|++.+++|++ +|+.+.+.|+.|+..+|.+.|++||..+|+.|+.
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~ 240 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKL 240 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhhh
Confidence 999999999999999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++++|+|.+++|+|++|+.|+++++|++++|+++| .||+|+|..||+||++. +|-|+++++++++|+.|+++..
T Consensus 241 SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDG-sYgip~gli~SfPv~~k-~g~wkiVqgl~iddf~r~km~~ 314 (332)
T KOG1496|consen 241 SSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDG-SYGIPDGLIFSFPVTIK-NGDWKIVQGLPIDDFSREKMDL 314 (332)
T ss_pred hhhhhHHHhHhhhhhheecCCCCccEEEEeeecCC-CCCCCCCeEEEcceEec-CCceEEEcCcchhHHHHHhhhh
Confidence 99999999999999999999999999999999999 59999999999999996 5999999999999999999863
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=508.70 Aligned_cols=290 Identities=22% Similarity=0.302 Sum_probs=262.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc--ceEEEecCcccccCCCcE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAEW 175 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~~~~~eal~dADi 175 (405)
||+|||| |+||+++|+.|+..+++++ +.| +|+++++++|+++||.|+. ++. .++++++++|++++|||+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~e---lvL----~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~y~~~~~aDi 71 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSE---IVL----IDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGDYDDCADADI 71 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECCHHHhCCCCE
Confidence 7999996 9999999999999998764 655 5677889999999999987 433 357777789999999999
Q ss_pred EEEeCCcCCCCCCc--hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHH
Q 015501 176 ALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDEN 253 (405)
Q Consensus 176 VIi~~g~~~k~g~~--r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~ 253 (405)
||+++|.||+|||+ |+|++..|++|++++++.|++++ |++++|++|||+|+||++++|.++..++|+||+||.|||+
T Consensus 72 vvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~ 150 (307)
T cd05290 72 IVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTA 150 (307)
T ss_pred EEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHH
Confidence 99999999999999 69999999999999999999997 9999999999999999999999954445999999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhh---ccccHHHHHHHHHhhhHHHHHhcCCch
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD---HKWLEEGFTETIQKRGGLLIKKWGRSS 330 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~---~~~~~~el~~~v~~~~~~ii~~~G~~~ 330 (405)
||+++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.. +.+..+++.++++++|++|++.||.++
T Consensus 151 R~~~~la~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t~ 229 (307)
T cd05290 151 RLRRIVADKYGVDPKNVTG-YVLGEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTN 229 (307)
T ss_pred HHHHHHHHHhCCCcccEEE-EEEecCCCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCeeh
Confidence 9999999999999999997 899999999999999999999999988742 233467899999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 331 ~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|+ .|.++++++.+|+ .|++.++|+|++++| +|| ++|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 230 ~~-ia~a~~~ii~ail--~d~~~v~~vsv~~~G-~yg-~~~v~~svP~~ig~~Gv~~i~~-l~L~~~E~~~l~~ 297 (307)
T cd05290 230 AG-IAKSASRLIKAIL--LDERSILPVCTLLSG-EYG-LSDVALSLPTVIGAKGIERVLE-IPLDEWELEKLHK 297 (307)
T ss_pred HH-HHHHHHHHHHHHH--hCCCeEEEEEEeeCC-ccC-CCCEEEEEEEEEeCCCceEecC-CCCCHHHHHHHHH
Confidence 86 5678888888887 688999999999999 799 5899999999999999999995 9999999999985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=513.13 Aligned_cols=303 Identities=51% Similarity=0.783 Sum_probs=275.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.||+||||+|+||+++++.|+.+++++++.++.|+|+|++.+.++++|+++||.|+.+++...++++.++|++++|||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 48999998899999999999999999876677788866654448899999999999866665667778899999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~ 255 (405)
|+++|.|++||++|.+++..|++|++++++.|+++|+|++++|++|||+|+||+++++.++.+|+ |+||+ |.|||+||
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R~ 159 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNRA 159 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHHH
Confidence 99999999999999999999999999999999999669999999999999999999999965676 77766 99999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhh---hhccccHHHHHHHHHhhhHHHHHhcCCchHH
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII---KDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~---~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~ 332 (405)
|++||++++++|++|++++||||||++|+|+||+++|+|+|+.++. .+++|..+++.+++++++++|++.||+++|+
T Consensus 160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~~ 239 (323)
T cd00704 160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAA 239 (323)
T ss_pred HHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcchhH
Confidence 9999999999999998778999999999999999999999998874 3345667899999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCC--cEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 333 STAVSIVDAMKSLVTPTPEG--DWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 333 s~A~~i~~ai~~~~~~~~~~--~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.|.++++++++|+. |++ +++|||++++| +| |+|+|++||+||++|++||++++ +++|+++|+++|++
T Consensus 240 ~~a~a~~~iv~ail~--~~~~~~v~~~s~~~~g-~y~gi~~~v~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~~ 310 (323)
T cd00704 240 SAAKAIADHVKDWLF--GTPPGEIVSMGVYSPG-NPYGIPPGIVFSFPCTCKGGGWHVVE-DLKLNDWLREKLKA 310 (323)
T ss_pred HHHHHHHHHHHHHHh--CCCCCcEEEEEEEeCC-ccCCCCCceEEEEEEEEcCCEEEEec-CCCCCHHHHHHHHH
Confidence 789999999999994 555 99999999999 79 99999999999999999999988 59999999999985
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-66 Score=509.55 Aligned_cols=307 Identities=59% Similarity=0.936 Sum_probs=279.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+|+||+||||+|+||+++++.|+.+++++.++++.|+|+|+..+.++++|+++||+|+.+++..++++++++|++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 47899999977999999999999999998556778888777666677999999999998666556788889999999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||+++|.|++||++|.+++..|++|++++++.|++++.|++++|++|||+|+||+++++.++++|+ |+||+ |.||+.
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs~ 159 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDHN 159 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHHH
Confidence 9999999999999999999999999999999999999734999999999999999999999966886 88999 999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHH
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s 333 (405)
||++++|+++|+++++|++++|||+||++++|+||+++++|+|+.+++.+.+|..+++.+++++++++|++.||+++|+.
T Consensus 160 Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~ 239 (322)
T cd01338 160 RAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSAAS 239 (322)
T ss_pred HHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCccHHH
Confidence 99999999999999999986779999999999999999999999988776667688999999999999999999999975
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 334 ~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+.++++++++|+.+.+++.++|+|++++| +||+|+|++||+||++|++|+++++ +++|+++|+++|++
T Consensus 240 ~a~a~~~iv~ail~~~~~~~i~~~sv~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~ 308 (322)
T cd01338 240 AANAAIDHMRDWVLGTPEGDWFSMAVPSDG-SYGIPEGLIFSFPVRSKGGGYEIVE-GLEIDDFAREKIDA 308 (322)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEEEccC-ccCCCCCeEEEEEEEEeCCEEEEEe-CCCCCHHHHHHHHH
Confidence 557999999999954333799999999999 8999999999999999999999998 59999999999985
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-65 Score=504.16 Aligned_cols=305 Identities=48% Similarity=0.734 Sum_probs=273.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||+||||+|+||+++++.|+.+++++.++++.|+|+|++.+.++++|+++||.|+.+++...+..++++|++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999988999999999999999986434567777777666667999999999998655555544457799999999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHHHH
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~ 257 (405)
+++|.|+++|++|.+++..|++|++++++.|+++|+|++++|++|||+|+||+++++.++++|+++||+||.|||+|||+
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999995599999999999999999999999888889999999999999999
Q ss_pred HHHHHhCCCCCCceeEEEEeecCCCcccccccceEc-C---cchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHH
Q 015501 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-G---LPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (405)
Q Consensus 258 ~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~-G---~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s 333 (405)
+||+++|+++++|++++||||||++|||+||+++|+ | +|+.+++.+.+|+.+++.+++++++++|++.+|++...+
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~t~~~ 240 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALS 240 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCCHHHH
Confidence 999999999999987799999999999999999999 9 999998876556678999999999999999777555556
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcc-cCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 334 ~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~-ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|.++++++++|+.+.|++.++|+|++++| + ||+|+|++||+||++|++|+ +++.+++|+++|+++|++
T Consensus 241 ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g-~~yg~~~~v~~s~P~~ig~g~~-~~i~el~L~~~E~~~l~~ 310 (324)
T TIGR01758 241 AAKAAVDQMHDWVLGTPEGTFVSMGVYSDG-SPYGVPKGLIFSFPVTCKNGEW-KIVEGLCVDDSSRKKLAL 310 (324)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEeecCC-cccCCCCceEEEEEEEEcCCeE-EEecCCCCCHHHHHHHHH
Confidence 999999999999987789999999999999 8 99988999999999995555 555469999999999985
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=497.37 Aligned_cols=287 Identities=23% Similarity=0.336 Sum_probs=262.6
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeC
Q 015501 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (405)
Q Consensus 101 IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~ 180 (405)
|||| |+||+++++.|+..+++++ |.| +|+++++++|+++||+|+.+.+..+++++.++|++++|||+||+++
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~e---l~L----~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADE---IVL----IDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCE---EEE----EeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 7895 9999999999999999864 655 5677889999999999998555556788888999999999999999
Q ss_pred CcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHHHHHH
Q 015501 181 AKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQL 259 (405)
Q Consensus 181 g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~~~~l 259 (405)
|.||+|||+|.|++.+|++|++++++.|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~s-g~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKLS-GFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHh-CCCHHHEEeccchHHHHHHHHHH
Confidence 99999999999999999999999999999996 99999999999999999999998 5776 889999999999999999
Q ss_pred HHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhc----cccHHHHHHHHHhhhHHHHHhcCCchHHHHH
Q 015501 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH----KWLEEGFTETIQKRGGLLIKKWGRSSAASTA 335 (405)
Q Consensus 260 A~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~----~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A 335 (405)
|+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.+. ++..+++.++++++|+++++.||+++|+ +|
T Consensus 151 a~~l~v~~~~V~~-~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~-~a 228 (299)
T TIGR01771 151 AEKLGVDPQSVHA-YIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYG-IG 228 (299)
T ss_pred HHHhCcCcCeEEE-EEEecCCCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeHH-HH
Confidence 9999999999996 8999999999999999999999999887541 3346789999999999999999999886 67
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 336 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 336 ~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.++++++++|+ .|+++++|+|++++| +||+ +|+|||+||+||++|++++++ ++|+++|+++|++
T Consensus 229 ~a~~~~i~ail--~d~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~~-l~L~~~E~~~l~~ 292 (299)
T TIGR01771 229 MAVARIVEAIL--HDENRVLPVSAYLDG-EYGI-KDVYIGVPAVLGRNGVEEIIE-LPLSDEEKEAFQK 292 (299)
T ss_pred HHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCEEEEEEEEEeCCeeEEEcc-CCCCHHHHHHHHH
Confidence 78999999988 689999999999999 7998 589999999999999999995 9999999999985
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-64 Score=493.39 Aligned_cols=293 Identities=20% Similarity=0.309 Sum_probs=262.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (405)
..+||+|||| |+||+++++.|+.+++..+ +.| +|+++++++|+++||+|+. ++.....+. +++|++++||
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~e---l~L----iD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~~~~a 72 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADE---LVL----VDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSVTANS 72 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHHhCCC
Confidence 3579999995 9999999999999988753 555 5666789999999999998 443322443 4789999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||+++|.+++|||+|.+++.+|++|++++++.|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~k~s-g~p~~~viG~gt~Ld~ 150 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVSNPVDIMTYVAWKLS-GLPKHRVIGSGCNLDS 150 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEccChHHHHHHHHHHHh-CCCHHHEEecCchHHH
Confidence 999999999999999999999999999999999999996 99999999999999999999998 5775 88999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhh-----ccccHHHHHHHHHhhhHHHHHhcC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-----HKWLEEGFTETIQKRGGLLIKKWG 327 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~-----~~~~~~el~~~v~~~~~~ii~~~G 327 (405)
+|++++||+++++++++|++ +||||||++|||+||+++|+|+|+.+++.. ++...+++.++++++|++|++.||
T Consensus 151 ~R~~~~la~~l~v~~~~v~~-~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg 229 (312)
T cd05293 151 ARFRYLIAERLGVAPSSVHG-WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKG 229 (312)
T ss_pred HHHHHHHHHHhCCChhhEEE-EEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999996 899999999999999999999999988632 111247899999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 328 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 328 ~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.++|+ +|.++++++++|+ +|++.++|++++++| +||+|+|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 230 ~t~~~-~a~a~~~ii~ail--~d~~~~~~vsv~~~g-~yg~~~d~~~svP~~ig~~Gi~~i~~-l~L~~~E~~~l~~ 301 (312)
T cd05293 230 YTSWA-IGLSVADLVDAIL--RNTGRVHSVSTLVKG-LHGIEDEVFLSLPCILGENGITHVIK-QPLTEEEQEKLQK 301 (312)
T ss_pred CchHH-HHHHHHHHHHHHH--cCCCeEEEEEEEeCC-ccCCCCCeEEEEeEEEeCCceEEEec-CCCCHHHHHHHHH
Confidence 99886 6788888899888 678999999999999 79999999999999999999999995 9999999999985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-64 Score=501.01 Aligned_cols=291 Identities=21% Similarity=0.320 Sum_probs=262.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (405)
+||+|||| |+||+++++.|+..+++++ +.| +|+++++++|+++||+|+. ++...+.++. ++|++++|||+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L----iDi~~~~~~g~a~DL~~~~-~~~~~~~i~~~~dy~~~~daDi 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADE---LAL----VDVNPDKLRGEMLDLQHAA-AFLPRTKILASTDYAVTAGSDL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE----EeCCCchhhHHHHHHHhhh-hcCCCCEEEeCCCHHHhCCCCE
Confidence 79999995 9999999999999998764 655 5667789999999999998 4544356653 68999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R 254 (405)
||+++|.|++|||+|.|++.+|++|++++++.|+++| |++|+|++|||+|++|+++++.++ +|+ |+||+||.||++|
T Consensus 109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPvdv~t~~~~k~sg-~p~~rviG~gt~LDs~R 186 (350)
T PLN02602 109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPVDVLTYVAWKLSG-FPANRVIGSGTNLDSSR 186 (350)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHHhC-CCHHHEEeecchHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999995 776 8899999999999
Q ss_pred HHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhc--cc---cHHHHHHHHHhhhHHHHHhcCCc
Q 015501 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KW---LEEGFTETIQKRGGLLIKKWGRS 329 (405)
Q Consensus 255 ~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~--~~---~~~el~~~v~~~~~~ii~~~G~~ 329 (405)
++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.+. .+ ..+++.+++++++++|++.||.+
T Consensus 187 ~r~~lA~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG~t 265 (350)
T PLN02602 187 FRFLIADHLDVNAQDVQA-YIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYT 265 (350)
T ss_pred HHHHHHHHhCCCccceee-eEEecCCCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999997 8999999999999999999999999986542 11 14678999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCC-CceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA-EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 330 ~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~-~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|+ +|.++++++.+++ .|++.++|+|++++| +||+| +|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 266 ~~g-ia~a~a~ii~ail--~d~~~v~~vsv~~~g-~Yg~~~~~v~~s~P~~ig~~Gi~~i~~-l~L~~~E~~~l~~ 336 (350)
T PLN02602 266 SWA-IGYSVASLVRSLL--RDQRRIHPVSVLAKG-FHGIDEGDVFLSLPAQLGRNGVLGVVN-VHLTDEEAERLRK 336 (350)
T ss_pred HHH-HHHHHHHHHHHHH--hcCCCeEEEEEeccc-ccCCCCCCcEEEEEEEEeCCeeEEEec-CCCCHHHHHHHHH
Confidence 875 6777778888877 689999999999999 89994 799999999999999999985 9999999999985
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=493.29 Aligned_cols=293 Identities=22% Similarity=0.363 Sum_probs=265.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+..+||+|||| |+||+++++.|+..+++++ |.| +|+++++++|+++||+|+. ++..++++++++|++++||
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~e---l~L----~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~~~~~~a 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADE---LVI----IDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDYSDCKDA 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCCchhHHHHHHHHhhc-cccCCeEEEeCCHHHhCCC
Confidence 34689999996 9999999999999998753 555 5677889999999999998 5545677888899999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||+++|.||+|||+|.|++..|++|++++++.+++++ |++|+|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~d~~~~~~~k~s-g~p~~~viG~gt~LDs 152 (315)
T PRK00066 75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPVDILTYATWKLS-GFPKERVIGSGTSLDS 152 (315)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcHHHHHHHHHHHh-CCCHHHEeecCchHHH
Confidence 999999999999999999999999999999999999997 99999999999999999999998 5776 88999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc----HHHHHHHHHhhhHHHHHhcCC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~----~~el~~~v~~~~~~ii~~~G~ 328 (405)
+|+++++|+++|+++++|++ +||||||++|+|+||+++|+|+|+.+++.+..|. .+++.++++++++++++.||+
T Consensus 153 ~R~~~~la~~l~v~~~~V~~-~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~ 231 (315)
T PRK00066 153 ARFRYMLSEKLDVDPRSVHA-YIIGEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGA 231 (315)
T ss_pred HHHHHHHHHHhCCCcccEEE-EEEecCCCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999999999997 8999999999999999999999999988664443 347899999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|+ .|.++++.+.+++ .|++.++|+|++.+| +|| ++|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 232 t~~~-~a~~~~~i~~ail--~~~~~v~~~sv~~~g-~yg-~~~v~~S~Pv~ig~~Gv~~i~~-l~L~~~E~~~L~~ 301 (315)
T PRK00066 232 TYYG-IAMALARITKAIL--NNENAVLPVSAYLEG-QYG-EEDVYIGVPAVVNRNGIREIVE-LPLNDDEKQKFAH 301 (315)
T ss_pred ehHH-HHHHHHHHHHHHH--cCCCeEEEEEEEecc-ccC-CCCEEEEeEEEEeCCcEEEEcC-CCCCHHHHHHHHH
Confidence 9885 6667777777777 589999999999999 899 5899999999999999999985 9999999999985
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=495.21 Aligned_cols=308 Identities=50% Similarity=0.780 Sum_probs=274.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+|.||+||||+|+||+++++.|+.+++++.++...|+|+|++.+.++++++++|+.|+.+++..++++..+.+++++|||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 47899999988999999999999999886323345566666555567899999999988666566766666689999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R 254 (405)
+||+++|.+++++++|.+++..|++|++++++.|+++++|++++|++|||+|+||+++++.++++|+++||+||.||++|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999997679999999999999999999998889987799999999999
Q ss_pred HHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEc----CcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCch
Q 015501 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSS 330 (405)
Q Consensus 255 ~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~----G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~ 330 (405)
++++||+++++++++|++++||||||++|||+||+++|+ |+|+.+++.+++|..+++.+++++++++|++.++++.
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~g~t 240 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSS 240 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccccch
Confidence 999999999999999987779999999999999999999 9999999876667788999999999999999644334
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 331 ~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.++|.++++++++|+.+.+++.++|+|++++| +||+|+|++||+||++|++||++++ +++|+++|+++|++
T Consensus 241 ~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~ 312 (325)
T cd01336 241 AMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDG-SYGVPEGLIFSFPVTCKNGKWKIVQ-GLSIDDFSREKIDA 312 (325)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCC-CcCCCCceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHH
Confidence 445889999999999954346999999999999 8999899999999999999999998 59999999999975
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01756 LDH_protist lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=491.67 Aligned_cols=289 Identities=35% Similarity=0.579 Sum_probs=258.0
Q ss_pred HHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhh
Q 015501 113 LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192 (405)
Q Consensus 113 a~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ 192 (405)
.+.|+++++|| |+++.|+|+|++.++++++|++|||.|+.++......++++.+++++|||+||+++|.||+|||+|.+
T Consensus 2 ~~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~d 80 (313)
T TIGR01756 2 SHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRAD 80 (313)
T ss_pred cceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHH
Confidence 45678899999 89999999988877899999999999998444333344444447999999999999999999999999
Q ss_pred hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH-HHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCce
Q 015501 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL-KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271 (405)
Q Consensus 193 ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~-k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~ 271 (405)
++..|++|++++++.|++++.+++++|++|||+|+||++++ +.+ ++|+++||+||.||++||+++||+++++++++|+
T Consensus 81 ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~s-g~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~ 159 (313)
T TIGR01756 81 LLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAP-KLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIY 159 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcC-CCCHHHEEecccHHHHHHHHHHHHHhCcChhhee
Confidence 99999999999999999998456899999999999999995 655 7888899999999999999999999999999998
Q ss_pred eEEEEeecCCCcccccccceE--cCcchHhh--hhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHHHHHHHHHHHhhc
Q 015501 272 NMTIWGNHSTTQVPDFLNARI--NGLPVKEI--IKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVT 347 (405)
Q Consensus 272 ~~~V~G~HG~~~vp~~S~a~I--~G~p~~~~--~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A~~i~~ai~~~~~ 347 (405)
+++||||||++|||+||+++| +|+|+..+ +. ++|..+++.+++++++++|++.||.++|+..|.++++++++|+.
T Consensus 160 ~~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~~~~-~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~ 238 (313)
T TIGR01756 160 HVVVWGNHAESMVADLTHAEFTKNGKHQKVFDELC-RDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLF 238 (313)
T ss_pred eeEEEECCCCceeecccccEEecCCeehhHhhhcC-cHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhc
Confidence 777999999999999999999 99996544 32 24667899999999999999999999998777899999999997
Q ss_pred CCCCCcEEEEeeeeCC-cccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 348 PTPEGDWFSSGVYTNG-NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 348 ~~~~~~i~~~sv~~~G-~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|++.++|+|++++| .+||+|+|++||+||++|++|+++++++++|+++|+++|++
T Consensus 239 ~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~ 296 (313)
T TIGR01756 239 GTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQ 296 (313)
T ss_pred CCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHH
Confidence 6688999999999852 27999889999999999999999999779999999999975
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. |
| >PLN00135 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=487.59 Aligned_cols=286 Identities=41% Similarity=0.661 Sum_probs=258.7
Q ss_pred HHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHH
Q 015501 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195 (405)
Q Consensus 116 L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~ 195 (405)
|+++++||.++++.|+|+|++.++++++|++|||.|+++++...+++++++|++++|||+||+++|.|++||++|.+++.
T Consensus 2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~ 81 (309)
T PLN00135 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS 81 (309)
T ss_pred cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 56788999889999999877776699999999999998555555665566699999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEE
Q 015501 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275 (405)
Q Consensus 196 ~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V 275 (405)
.|++|++++++.|+++++|++++|++|||+|+||+++++.++..++|+||+||.||++||+++||+++|+++++|++++|
T Consensus 82 ~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 161 (309)
T PLN00135 82 KNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVII 161 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEE
Confidence 99999999999999964599999999999999999999999766669999999999999999999999999999965699
Q ss_pred EeecCCCcccccccceE----cCcchHhhhhhccccHHHHHHHHHhhhHHHHHh-cCCchHHHHHHHHHHHHHHhhcCCC
Q 015501 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK-WGRSSAASTAVSIVDAMKSLVTPTP 350 (405)
Q Consensus 276 ~G~HG~~~vp~~S~a~I----~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~-~G~~~~~s~A~~i~~ai~~~~~~~~ 350 (405)
|||||++|||+||+++| +|+|+.+++.+++|+.+++.+++++++++|++. +|++.| ++|.++++++++|+.+.|
T Consensus 162 lGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~-~ia~a~~~iv~ai~~~~~ 240 (309)
T PLN00135 162 WGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSAL-SAASSACDHIRDWVLGTP 240 (309)
T ss_pred EEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHH-HHHHHHHHHHHHHHhCCc
Confidence 99999999999999999 999999987665577889999999999999997 555555 588999999999885447
Q ss_pred CCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 351 EGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 351 ~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++.++|+|++++| +||+|+|++||+||++|++|++.++ +++|+++|+++|++
T Consensus 241 ~~~v~~vsv~~~g-~YGi~~~v~~s~P~vlg~~gve~v~-~l~L~~~E~~~l~~ 292 (309)
T PLN00135 241 EGTWVSMGVYSDG-SYGVPPGLIYSFPVTCEKGEWSIVQ-GLSIDEFSRKKMDA 292 (309)
T ss_pred CCeEEEEEEEecC-ccCCcCCeEEEEEEEEECCEEEEec-CCCCCHHHHHHHHH
Confidence 8999999999999 8999889999999999999998887 59999999999985
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-62 Score=479.51 Aligned_cols=291 Identities=23% Similarity=0.361 Sum_probs=262.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||+|||+ |.||+++++.|+..++.. +|.| +|++.++++++++||.|+.......+.+..++++++++||+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~---ei~l----~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIAD---ELVL----IDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCC---EEEE----EeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 48999995 999999999999988754 3655 577778899999999998744434456667889999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~ 255 (405)
|+++|.|++|||+|.+++.+|++|++++++.|+++| |++++|++|||+|++|+++++.+ ++|+ |+||+||.||++|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~d~~~~~~~~~~-g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPVDVITYVVQKLS-GLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHh-CcCHHHEeeccchHHHHHH
Confidence 999999999999999999999999999999999997 99999999999999999999986 6776 88999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc---HHHHHHHHHhhhHHHHHhcCCchHH
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKKWGRSSAA 332 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~---~~el~~~v~~~~~~ii~~~G~~~~~ 332 (405)
+++||+++|+++++|++ +||||||++++|+||+++|+|+|+.+++.+..|. .+++.++++++|++|++.||.++|+
T Consensus 151 ~~~la~~l~v~~~~v~~-~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~ 229 (306)
T cd05291 151 RRALAEKLNVDPRSVHA-YVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYG 229 (306)
T ss_pred HHHHHHHHCCCcccceE-EEEecCCCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 99999999999999997 8999999999999999999999999988654554 5678999999999999999999875
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 333 s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|.++++++++|+ .|++.++|+|++++| +||. +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 230 -~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~ 295 (306)
T cd05291 230 -IATALARIVKAIL--NDENAILPVSAYLDG-EYGE-KDVYIGVPAIIGRNGVEEVIE-LDLTEEEQEKFEK 295 (306)
T ss_pred -HHHHHHHHHHHHH--cCCCEEEEEEEEecc-ccCC-CCEEEEEEEEEeCCCEEEEEC-CCCCHHHHHHHHH
Confidence 5668888888888 689999999999999 7994 899999999999999999985 9999999999985
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=474.44 Aligned_cols=288 Identities=24% Similarity=0.347 Sum_probs=263.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCcEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADiVI 177 (405)
|+|||| |.||+++++.|+..+++.+ +.| +|+++++++|+++||+|+...+ ...++. +++|++++|||+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~e---l~l----~D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASE---LVL----VDVNEEKAKGDALDLSHASAFL-ATGTIVRGGDYADAADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCccHHHHHHHhHHHhcccc-CCCeEEECCCHHHhCCCCEEE
Confidence 689995 9999999999999998764 555 5677789999999999998543 334443 46699999999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHHH
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~~ 256 (405)
+++|.|++|||+|.+++.+|+++++++++.|+++| |++|+|++|||+|++|++++++++ +|+ |+||+||.|||+|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~sg-~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKLSG-LPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHHhC-cCHHHEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999997 999999999999999999999985 664 999999999999999
Q ss_pred HHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHHH
Q 015501 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336 (405)
Q Consensus 257 ~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A~ 336 (405)
+++|+++++++++|++ +||||||++|||+||+++|+|+|+.+++++.+|..+++.++++++++++++.||+++|+ +|.
T Consensus 150 ~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~~~-~a~ 227 (300)
T cd00300 150 SLLAEKLDVDPQSVHA-YVLGEHGDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYG-IAT 227 (300)
T ss_pred HHHHHHhCCCcccEEE-EEEeccCCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcchHH-HHH
Confidence 9999999999999997 89999999999999999999999999987766778999999999999999999998875 788
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 337 ~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++++++++|+ +|+++++|+|++++| +|| ++|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 228 a~~~~~~ai~--~~~~~v~~~s~~~~g-~yg-~~~~~~s~Pv~ig~~Gi~~i~~-l~L~~~E~~~l~~ 290 (300)
T cd00300 228 AIADIVKSIL--LDERRVLPVSAVQEG-QYG-IEDVALSVPAVVGREGVVRILE-IPLTEDEEAKLQK 290 (300)
T ss_pred HHHHHHHHHH--cCCCeEEEEEEEecC-ccC-CCCEEEEEEEEEeCCCeEEEec-CCCCHHHHHHHHH
Confidence 8999999888 579999999999999 899 4899999999999999999995 9999999999985
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-61 Score=449.09 Aligned_cols=292 Identities=21% Similarity=0.295 Sum_probs=264.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (405)
..||.|+| +|+||.+.++.|+..++..+ ++| +|.++++++|++|||+|.+ ++...-.++ ..+|.+.+|++
T Consensus 20 ~~KItVVG-~G~VGmAca~siL~k~Lade---l~l----vDv~~dklkGE~MDLqH~s-~f~~~~~V~~~~Dy~~sa~S~ 90 (332)
T KOG1495|consen 20 HNKITVVG-VGQVGMACAISILLKGLADE---LVL----VDVNEDKLKGEMMDLQHGS-AFLSTPNVVASKDYSVSANSK 90 (332)
T ss_pred CceEEEEc-cchHHHHHHHHHHHhhhhhc---eEE----EecCcchhhhhhhhhcccc-ccccCCceEecCcccccCCCc
Confidence 68999999 59999999999999999865 666 6777889999999999998 666544444 34899999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||+|+|...++|++|++++++|..||+.+.+.+.+| +|++++|+++||+|+|||+.||.+ ++|+ |+||.||.|||.
T Consensus 91 lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDilTYv~wKLS-gfP~nRViGsGcnLDsa 168 (332)
T KOG1495|consen 91 LVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDILTYVTWKLS-GFPKNRVIGSGCNLDSA 168 (332)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHHHHHHHHHHc-CCcccceeccCcCccHH
Confidence 9999999988999999999999999999999999999 599999999999999999999998 5786 999999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc-----ccHHHHHHHHHhhhHHHHHhcCC
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~-----~~~~el~~~v~~~~~~ii~~~G~ 328 (405)
|||+.++++||++|+++++ +|+|||||+.||.||.+.|.|.++.++..+.. ..-+++.++|...+|++++.||+
T Consensus 169 RFryLi~~~Lg~~pss~hg-wIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGy 247 (332)
T KOG1495|consen 169 RFRYLIGNRLGVHPSSCHG-WIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGY 247 (332)
T ss_pred HHHHHHHHHhCCCcccceE-EEeeccCCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999997 89999999999999999999999998765421 11247888999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|+ .+.++++.+.+++ .|.+.++|+|+..+| .|||.+|+|||+||++|++|+..+++ .+|+++|.++|++
T Consensus 248 Tswa-Iglsva~l~~ail--~n~~~i~~Vst~~kg-~~gI~~dVflSlPc~l~~~Gi~~vv~-~~Lt~~E~akL~k 318 (332)
T KOG1495|consen 248 TSWA-IGLSVADLAQAIL--RNLRRIHPVSTMVKG-LYGIDDDVFLSLPCLLGANGITHVVK-QKLTDEEVAKLKK 318 (332)
T ss_pred hHHH-HHHHHHHHHHHHH--hCcCceeeeeecccc-ccCCCCceEEecceeecCCchhhhhc-ccCCHHHHHHHHH
Confidence 9996 7788888888777 789999999999999 89998899999999999999999995 9999999999975
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-59 Score=457.82 Aligned_cols=290 Identities=23% Similarity=0.353 Sum_probs=261.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||+ |.||+++++.|+..++..+ +.| +|++++++++.++|+.|+. ++.....+.+++++++++||+|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~e---v~l----~D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASE---IVL----VDINKAKAEGEAMDLAHGT-PFVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCE---EEE----EECCchhhhhHHHHHHccc-cccCCeEEeeCCHHHhCCCCEE
Confidence 59999995 9999999999999887543 655 5777788999999999986 4444456667889999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~ 255 (405)
|++++.|++++++|.+++.+|+++++++++.|++++ |++++++++||+|++|+++++++ ++|+ |+||+||.||++|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tNP~d~~~~~~~~~s-g~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNPVDVLTYVAYKLS-GLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHH-CcCHHHeecccchhhHHHH
Confidence 999999999999999999999999999999999997 99999999999999999999998 5776 88999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhc--c---ccHHHHHHHHHhhhHHHHHhcCCch
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--K---WLEEGFTETIQKRGGLLIKKWGRSS 330 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~--~---~~~~el~~~v~~~~~~ii~~~G~~~ 330 (405)
+++||+++++++++|++ +||||||++|||+||+++|+|+|+.+++.+. . +..+++.+++++++++|++.||.++
T Consensus 150 ~~~la~~~~v~~~~v~~-~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~ 228 (308)
T cd05292 150 RYLLGEHLGVDPRSVHA-YIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATY 228 (308)
T ss_pred HHHHHHHhCCCccceec-eeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 99999999999999996 8999999999999999999999999886542 1 2356799999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 331 ~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|+ +|.++++++++|+ .|++.++|+|++++| +||+ +|++||+||+||++|++++++ ++|+++|+++|++
T Consensus 229 ~~-~a~a~~~i~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~~-~~L~~~E~~~l~~ 296 (308)
T cd05292 229 YA-IGLALARIVEAIL--RDENSVLTVSSLLDG-QYGI-KDVALSLPCIVGRSGVERVLP-PPLSEEEEEALRA 296 (308)
T ss_pred HH-HHHHHHHHHHHHH--cCCCcEEEEEEEEcc-cCCC-CCEEEEEEEEEeCCceEEecC-CCCCHHHHHHHHH
Confidence 75 5667888888887 689999999999999 7998 799999999999999999995 9999999999985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=457.11 Aligned_cols=292 Identities=24% Similarity=0.355 Sum_probs=257.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (405)
+.+||+|||| |+||+++++.++..++ . ++.| +|+++++++|.++|+.|+.........+. +++|++++||
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~---~l~L----~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~A 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-G---DVVL----YDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDS 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-C---eEEE----EECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCC
Confidence 4579999996 9999999999998886 2 2554 45666778899999999863222234443 4688999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC-CCceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~-~k~ig~gt~LDs 252 (405)
|+||+++|.++++|++|.|++..|.++++++++.|+++| |++|+|++|||+|++++++++.+ ++| .|+||+||.||+
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t~~~~~~s-~~p~~rviG~gt~lds 152 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMVKVFQEKS-GIPSNKICGMAGVLDS 152 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHhh-CCCcccEEEecchHHH
Confidence 999999999999999999999999999999999999997 99999999999999999999987 677 599999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc---HHHHHHHHHhhhHHHHHh--cC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKK--WG 327 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~---~~el~~~v~~~~~~ii~~--~G 327 (405)
+|++++||+++|+++++|++ +|+||||++|||+||+++|+|+|+.+++++..|. .+++.++++++++++++. +|
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~kg 231 (319)
T PTZ00117 153 SRFRCNLAEKLGVSPGDVSA-VVIGGHGDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKG 231 (319)
T ss_pred HHHHHHHHHHhCCCcccceE-EEeecCCCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999996 8899999999999999999999999987654454 457888999999999986 66
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 328 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 328 ~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+.| ++|.++++++.+|+ .|+++++|+|++++| +||++ |++||+||++|++|++++++ ++|+++||++|++
T Consensus 232 ~t~~-~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~~~~s~P~~ig~~Gv~~i~~-l~l~~~E~~~l~~ 302 (319)
T PTZ00117 232 SAFF-APAAAIVAMIEAYL--KDEKRVLVCSVYLNG-QYNCK-NLFVGVPVVIGGKGIEKVIE-LELNAEEKELFDK 302 (319)
T ss_pred ChHH-HHHHHHHHHHHHHh--cCCCeEEEEEEEecc-ccCCC-CeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHH
Confidence 5554 58888999999888 578999999999999 79995 99999999999999999995 9999999999975
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=454.29 Aligned_cols=294 Identities=25% Similarity=0.388 Sum_probs=258.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADi 175 (405)
|||+|+||+|++|+++++.|+..++.++ |. ++|.+...+++++.++|+.|+.........++ +++++++++||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~---v~--lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKE---IN--LISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE---EE--EEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCE
Confidence 6999999889999999999999988653 44 44443345889999999998753222223332 345899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R 254 (405)
||+++|.|+++|++|.+++..|+++++++++.|++++ |+++||+++||+|++|+++++.++ +|+ |+||+||.||++|
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~~g-~~~~~viG~gt~LDs~R 153 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKESG-FDKNRVFGLGTHLDSLR 153 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhcC-CCHHHEeeccchHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999996 665 8899999999999
Q ss_pred HHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHH
Q 015501 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334 (405)
Q Consensus 255 ~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~ 334 (405)
++++||+++++++++|++ +|+||||++|||+||+++|+|+|+.+++...++..+++.++++++|++|++.||+++| ++
T Consensus 154 ~~~~la~~l~v~~~~v~~-~viGeHg~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t~~-~~ 231 (309)
T cd05294 154 FKVAIAKHFNVHISEVHT-RIIGEHGDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGSEY-GP 231 (309)
T ss_pred HHHHHHHHHCcChHHeEE-EEEecCCCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCchh-hH
Confidence 999999999999999996 8999999999999999999999999986533455678999999999999999999877 46
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 335 A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.++++++++|+ +|++.++|++|+++| +| |++ |+++|+||++|++|++++++ ++|+++|+++|++
T Consensus 232 a~~~~~ii~ail--~~~~~v~~vsv~~~g-~~~~~~-~~~~svP~~ig~~Gv~~i~~-l~l~~~E~~~l~~ 297 (309)
T cd05294 232 ASAISNLVRTIA--NDERRILTVSTYLEG-EIDGIR-DVCIGVPVKLGKNGIEEIVP-IEMDDDEREAFRK 297 (309)
T ss_pred HHHHHHHHHHHH--CCCCeEEEEEEEECC-ccCCCC-CeEEEeEEEEcCCccEEEeC-CCCCHHHHHHHHH
Confidence 677777777777 689999999999999 56 996 99999999999999999996 9999999999985
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=450.92 Aligned_cols=294 Identities=20% Similarity=0.302 Sum_probs=256.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFE 171 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~ 171 (405)
|.+++||+|||| |+||+++++.++..++. ++.| +|++++++++.++|+.|.........++. +++|++++
T Consensus 3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl~----~i~L----vDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 3 MIKRRKISLIGS-GNIGGVMAYLIVLKNLG----DVVL----FDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCC----eEEE----EeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC
Confidence 445689999995 99999999999988872 2554 56666778899999999862222233444 46789999
Q ss_pred CCcEEEEeCCcCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC-CCcee
Q 015501 172 DAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFH 245 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~-----~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~-~k~ig 245 (405)
|||+||++++.|++||+ +|.+++..|.++++++++.|+++| |++|+|++|||+|++++++++.+ ++| .|+||
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~s-g~p~~rviG 151 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEHS-GLPKNKVCG 151 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHhc-CCChhhEEE
Confidence 99999999999999999 999999999999999999999997 99999999999999999999987 576 59999
Q ss_pred ecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccc---cHHHHHHHHHhhhHHH
Q 015501 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKRGGLL 322 (405)
Q Consensus 246 ~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~---~~~el~~~v~~~~~~i 322 (405)
+||.||++|++++||+++|+++++|++ +|+||||++|||+||+++|+|+|+.+++....+ ..+++.++++++|++|
T Consensus 152 lgt~lds~R~~~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i 230 (321)
T PTZ00082 152 MAGVLDSSRLRTYIAEKLGVNPRDVHA-SVIGAHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEI 230 (321)
T ss_pred ecCcccHHHHHHHHHHHhCCCccccee-eEEecCCCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 899999999999999999999999988643211 2467899999999999
Q ss_pred HHh--cCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHH
Q 015501 323 IKK--WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 400 (405)
Q Consensus 323 i~~--~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~ 400 (405)
++. +|.+.| ++|.++++++++|+ .|++.++|+|++++| +||+ +|++||+||+||++|++++++ ++|+++|++
T Consensus 231 ~~~~gkg~t~~-~ia~a~~~i~~ail--~d~~~v~~vs~~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~ 304 (321)
T PTZ00082 231 VDLLGTGSAYF-APAAAAIEMAEAYL--KDKKRVLPCSAYLEG-QYGH-KDIYMGTPAVIGANGVEKIIE-LDLTPEEQK 304 (321)
T ss_pred HhhcCCCccHH-HHHHHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCeEEEEEEEEeCCeEEEEeC-CCCCHHHHH
Confidence 995 566665 47778888888887 689999999999999 7999 799999999999999999996 999999999
Q ss_pred HHhh
Q 015501 401 RIAK 404 (405)
Q Consensus 401 ~l~~ 404 (405)
+|++
T Consensus 305 ~l~~ 308 (321)
T PTZ00082 305 KFDE 308 (321)
T ss_pred HHHH
Confidence 9985
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=448.12 Aligned_cols=287 Identities=23% Similarity=0.371 Sum_probs=251.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc--ceEEEecCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~~~~~eal~dAD 174 (405)
+||+|||+ |.||+.+|+.++..++. + +.| +|++++...|.++|+.|...... .+++. +++|+++++||
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~---Vvl----vDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~~~~~aD 71 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-D---LVL----LDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNNYADTANSD 71 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-e---EEE----EeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCCHHHhCCCC
Confidence 69999995 99999999999998763 2 555 45566777889999887652211 23443 46788899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||+++|.|+++|++|.+++..|.++++++++.|.+++ |++++|++|||+|++|+++++.+ ++|+ |+||+||.|||+
T Consensus 72 iVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~s-g~~~~rviG~g~~lds~ 149 (305)
T TIGR01763 72 IVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKS-GFPKERVIGQAGVLDSA 149 (305)
T ss_pred EEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHH-CcCHHHEEEeccchHHH
Confidence 99999999999999999999999999999999999996 99999999999999999999998 4665 999999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh--cCCchH
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--WGRSSA 331 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~--~G~~~~ 331 (405)
|++++||+++++++++|++ +||||||++|||+||+++|+|+|+.+++.++. .+++.++++++|++|++. +|.+.|
T Consensus 150 R~~~~la~~l~v~~~~v~~-~v~GeHg~s~~~~wS~~~i~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~~~~kg~t~~ 226 (305)
T TIGR01763 150 RFRTFIAMELGVSVQDVTA-CVLGGHGDAMVPLVRYSTVAGIPVADLISAER--IAEIVERTRKGGGEIVNLLKQGSAYY 226 (305)
T ss_pred HHHHHHHHHhCcCHHHeee-eEEecCCCcEEeeeeeeEECCEEHHHhcCHHH--HHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 9999999999999999996 89999999999999999999999999875432 478999999999999996 556766
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+ +|.++++++.+++ .|++.++|+|++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 227 ~-~a~~~~~i~~ai~--~~~~~v~~~s~~~~~-~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~ 293 (305)
T TIGR01763 227 A-PAASVVEMVEAIL--KDRKRVLPCAAYLDG-QYGI-DGIYVGVPVILGKNGVEHIYE-LKLDQSELALLNK 293 (305)
T ss_pred H-HHHHHHHHHHHHh--CCCCeEEEEEEEecc-cCCC-CceEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHH
Confidence 4 6666777777666 689999999999999 7999 799999999999999999996 9999999999985
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=446.45 Aligned_cols=280 Identities=25% Similarity=0.315 Sum_probs=237.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc---ccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~---~eal~dA 173 (405)
|||+||||+|+||+++|+.|+.+++..+ +.| +|++ +++|++|||+|+... .++....++ |++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~e---lvL----iDi~--~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSE---LAL----YDIV--NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcE---EEE----EecC--ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCC
Confidence 6999999779999999999999998653 554 4554 789999999998721 234422132 8999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH----HHHHHHHCCCCCC-Cceeecc
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN----ALICLKNAPSIPA-KNFHALT 248 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~----t~~~~k~s~~~~~-k~ig~gt 248 (405)
|+||+++|.||+|||+|+|++..|++|++++++.|++++ |++|+|++|||+|+| ++++++.+ ++|+ |+||+|+
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~s-~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKAG-VYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 999999999999999999999999999999999999996 999999999999998 77888887 4665 8999976
Q ss_pred hhhHHHHHHHHHHHhCCCCCCceeEEEEeec-CCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc-
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW- 326 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~H-G~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~- 326 (405)
|||+|+++++|+++|+++++|+. +||||| |++|||+||++++. .++ .+ + ..+++.++++++|++|++.|
T Consensus 148 -LDs~R~~~~la~~l~v~~~~V~~-~v~GeHsGds~vp~~S~~~~~----~~~-~~-~-~~~~i~~~v~~~g~~Ii~~k~ 218 (310)
T cd01337 148 -LDVVRANTFVAELLGLDPAKVNV-PVIGGHSGVTILPLLSQCQPP----FTF-DQ-E-EIEALTHRIQFGGDEVVKAKA 218 (310)
T ss_pred -hHHHHHHHHHHHHhCcCHHHEEE-EEEecCCCCceeccccccccc----ccC-CH-H-HHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999994 999999 89999999999753 332 11 1 25789999999999999974
Q ss_pred --CCchHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHHH
Q 015501 327 --GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRI 402 (405)
Q Consensus 327 --G~~~~~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~l 402 (405)
|.++| ++|.++++++++|+.. .+++.+++++ +.+| + |. +|+|||+||++|++|++++++ + +|+++|+++|
T Consensus 219 gkg~t~~-~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~~-l~~L~~~E~~~l 292 (310)
T cd01337 219 GAGSATL-SMAYAGARFANSLLRGLKGEKGVIECA-YVES-D-VT-EAPFFATPVELGKNGVEKNLG-LGKLNDYEKKLL 292 (310)
T ss_pred CCCCcch-hHHHHHHHHHHHHHHhcCCCcceEEEE-EEec-c-CC-CceEEEEEEEEeCCeEEEEeC-CCCCCHHHHHHH
Confidence 66655 4888899999988843 3466788887 7777 4 65 799999999999999999985 8 6999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 293 ~~ 294 (310)
T cd01337 293 EA 294 (310)
T ss_pred HH
Confidence 75
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-57 Score=444.70 Aligned_cols=280 Identities=24% Similarity=0.249 Sum_probs=232.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-Cc--ccccCCCc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP--YELFEDAE 174 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~--~eal~dAD 174 (405)
||+||||+|+||+++++.|+.+++..+ +.| +|+++ ++|++|||+|.. . ..++..++ ++ |++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~e---lvL----~Di~~--a~g~a~DL~~~~-~-~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSE---LSL----YDIAG--AAGVAADLSHIP-T-AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcE---EEE----ecCCC--CcEEEchhhcCC-c-CceEEEecCCCchHHHcCCCC
Confidence 799999779999999999999887643 544 44443 679999999976 2 22344322 33 99999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH----HHHHHHHHCCCCCC-Cceeecch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFHALTR 249 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~----~t~~~~k~s~~~~~-k~ig~gt~ 249 (405)
+||+++|.||+||++|.+++..|++|++++++.|++++ |++++|++|||+|+ +|+++++.+ ++|+ |+||+|+
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~s-g~p~~rViG~g~- 146 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKG-VYDPNKLFGVTT- 146 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhc-CCChHHEEeeec-
Confidence 99999999999999999999999999999999999996 99999999999998 888888887 5665 8999986
Q ss_pred hhHHHHHHHHHHHhCCCCCCceeEEEEeecCC-CcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh---
Q 015501 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--- 325 (405)
Q Consensus 250 LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~-~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~--- 325 (405)
||++||+++||+++|+++++|+. +||||||+ +|||+||++++ .+. +.++ ..+++.++++++|++|++.
T Consensus 147 LDsaR~r~~la~~l~v~~~~v~~-~ViGeHg~~s~vp~~S~~~~--~~~---~~~~--~~~~i~~~v~~~g~~Ii~~k~g 218 (312)
T TIGR01772 147 LDIVRANTFVAELKGKDPMEVNV-PVIGGHSGETIIPLISQCPG--KVL---FTED--QLEALIHRIQNAGTEVVKAKAG 218 (312)
T ss_pred chHHHHHHHHHHHhCCCHHHeEE-EEEEecCCCccccccccccc--cCC---CCHH--HHHHHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999985 99999987 99999999984 232 2222 2578999999999999996
Q ss_pred cCCchHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHHHh
Q 015501 326 WGRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRIA 403 (405)
Q Consensus 326 ~G~~~~~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~l~ 403 (405)
+|.+.| ++|.++++++.+++.. .|++.++|++ +++| +||. +|+|||+||++|++|++++++ + +|+++|+++|+
T Consensus 219 kg~t~~-~ia~a~~~iv~ail~~~~d~~~v~~~s-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l~ 293 (312)
T TIGR01772 219 AGSATL-SMAFAGARFVLSLVRGLKGEEGVVECA-YVES-DGVT-EATFFATPLLLGKNGVEKRLG-IGKLSSFEEKMLN 293 (312)
T ss_pred CCChhH-HHHHHHHHHHHHHHHhhCCCccEEEEE-EEcc-CCCc-CceEEEEEEEEcCCeeEEEEc-cCCCCHHHHHHHH
Confidence 466655 3555555444444421 4678999965 8999 7997 799999999999999999995 8 89999999997
Q ss_pred h
Q 015501 404 K 404 (405)
Q Consensus 404 ~ 404 (405)
+
T Consensus 294 ~ 294 (312)
T TIGR01772 294 G 294 (312)
T ss_pred H
Confidence 5
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-56 Score=436.07 Aligned_cols=289 Identities=23% Similarity=0.380 Sum_probs=254.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (405)
|+||+|||| |+||+++++.++..++. + +.| +|++++++++.++|+.|.........+++ ++++++++|||
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-e---v~L----~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-D---VVL----FDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-E---EEE----EECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCC
Confidence 689999996 99999999999987763 2 444 45677788999999998753333334444 46789999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||++++.|+++|++|.+++.+|+++++++++.|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~~~~~~~s-~~~~~~viG~gt~lds~ 150 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMTYVALKES-GFPKNRVIGMAGVLDSA 150 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCcccEEEeCCCcHHH
Confidence 99999999999999999999999999999999999997 99999999999999999999998 5664 899999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh--cCCchH
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--WGRSSA 331 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~--~G~~~~ 331 (405)
|++++||+++++++++|++ +|+||||++++|+||+++|+|.|+.+++.+ +| .+++.+.++++++++++. +|++.+
T Consensus 151 r~~~~la~~l~v~~~~v~~-~viGehg~s~~p~~S~~~v~g~~~~~~~~~-~~-~~~l~~~v~~~~~~ii~~~~kg~t~~ 227 (307)
T PRK06223 151 RFRTFIAEELNVSVKDVTA-FVLGGHGDSMVPLVRYSTVGGIPLEDLLSK-EK-LDEIVERTRKGGAEIVGLLKTGSAYY 227 (307)
T ss_pred HHHHHHHHHhCcChhhCcc-cEEcCCCCcceEchhhCEECCEEHHHhCCh-HH-HHHHHHHHHHHHHHHHhhcccCChhH
Confidence 9999999999999999996 889999999999999999999999988543 34 578999999999999985 676655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
..|..+++++.+++ .|++.++|+|++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 228 -~~A~~~~~ii~ail--~~~~~~~~~~v~~~g-~yg~-~~~~~s~P~~i~~~Gv~~i~~-~~l~~~e~~~l~~ 294 (307)
T PRK06223 228 -APAASIAEMVEAIL--KDKKRVLPCSAYLEG-EYGV-KDVYVGVPVKLGKNGVEKIIE-LELDDEEKAAFDK 294 (307)
T ss_pred -HHHHHHHHHHHHHH--cCCCcEEEEEEEecC-cCCC-CCeEEEeEEEEeCCeEEEEeC-CCCCHHHHHHHHH
Confidence 46777788888888 578999999999999 6999 899999999999999999985 9999999999985
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-55 Score=428.37 Aligned_cols=286 Identities=24% Similarity=0.381 Sum_probs=250.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCcEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADiVI 177 (405)
|+|||| |.||+.+++.++..++. + +.| +|++++++++.++|+.+.........++. ++++++++|||+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-e---V~L----~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-D---VVL----LDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-E---EEE----EeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEE
Confidence 689996 99999999999987764 2 544 45556788899999998752222223443 35589999999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC-CCceeecchhhHHHHH
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDENRAK 256 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~-~k~ig~gt~LDs~R~~ 256 (405)
++++.|+++|++|.+++.+|.++++++++.|+++| |++++|++|||+|++|+++++++ ++| .|+||+||.||++|++
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t~~~~~~s-~~~~~rviGlgt~lds~r~~ 149 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMTYVAYKAS-GFPRNRVIGMAGVLDSARFR 149 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCHHHEEEecchHHHHHHH
Confidence 99999999999999999999999999999999997 99999999999999999999998 565 4999999999999999
Q ss_pred HHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc--CCchHHHH
Q 015501 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW--GRSSAAST 334 (405)
Q Consensus 257 ~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~--G~~~~~s~ 334 (405)
++||+++++++++|++ +|+|+||++++|+||+++|+|.|+.+++.+++ .+++.++++++++++++.+ |+++|+ .
T Consensus 150 ~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~~k~~g~t~~~-~ 225 (300)
T cd01339 150 YFIAEELGVSVKDVQA-MVLGGHGDTMVPLPRYSTVGGIPLTELITKEE--IDEIVERTRNGGAEIVNLLKTGSAYYA-P 225 (300)
T ss_pred HHHHHHhCCCccceEE-EEEeCCCCcceecceecEECCEEHHHhcChHH--HHHHHHHHHHHHHHHHhhcCCCchhHH-H
Confidence 9999999999999996 88999999999999999999999998875543 5789999999999999966 777664 6
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 335 A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.++++++.+++ .|++.++|+|++++| +||++ |++||+||++|++|++++++ +.|+++|+++|++
T Consensus 226 a~~~~~i~~ail--~~~~~i~~~s~~~~g-~yg~~-~~~~s~P~~ig~~G~~~~~~-l~l~~~E~~~l~~ 290 (300)
T cd01339 226 AAAIAEMVEAIL--KDKKRVLPCSAYLEG-EYGIK-DIFVGVPVVLGKNGVEKIIE-LDLTDEEKEAFDK 290 (300)
T ss_pred HHHHHHHHHHHH--cCCCcEEEEEEEecc-ccCCC-CeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHH
Confidence 667777777666 689999999999999 89995 99999999999999999985 9999999999985
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-54 Score=425.96 Aligned_cols=285 Identities=25% Similarity=0.275 Sum_probs=243.6
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--Cc-cc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NP-YE 168 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~-~e 168 (405)
+..+|.||+||||+|+||+++++.|+..++..+ +.| + |+ ++++++++||.|+.. ...+.-.+ ++ |+
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~e---lvL--~--Di--~~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSE---LSL--Y--DI--VGAPGVAADLSHIDT--PAKVTGYADGELWEK 72 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCE---EEE--E--ec--CCCcccccchhhcCc--CceEEEecCCCchHH
Confidence 445789999999779999999999998777643 444 4 44 467899999999773 22333222 33 89
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH----HHCCCCCC-Cc
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KN 243 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~----k~s~~~~~-k~ 243 (405)
+++|||+||+++|.|++|+++|.+++..|+++++++++.|++++ |+++|+++|||+|+++++++ +.+ ++|+ |+
T Consensus 73 ~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~-~~~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~v 150 (321)
T PTZ00325 73 ALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSA-PKAIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKL 150 (321)
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHhhhhhcc-CCChhhe
Confidence 99999999999999999999999999999999999999999995 99999999999999999995 766 5665 89
Q ss_pred eeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCC-CcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHH
Q 015501 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLL 322 (405)
Q Consensus 244 ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~-~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~i 322 (405)
||+++ |||+||+++||+++|+++++|++ +||||||+ +|||+||++ |.|+.+ + ..+++.++++++|++|
T Consensus 151 iG~g~-LDs~R~r~~la~~l~v~~~~V~~-~VlGeHGd~s~v~~~S~~---g~~l~~----~--~~~~i~~~v~~~g~~I 219 (321)
T PTZ00325 151 FGVTT-LDVVRARKFVAEALGMNPYDVNV-PVVGGHSGVTIVPLLSQT---GLSLPE----E--QVEQITHRVQVGGDEV 219 (321)
T ss_pred eechh-HHHHHHHHHHHHHhCcChhheEE-EEEeecCCcccccchhcc---CCCCCH----H--HHHHHHHHHHHHHHHH
Confidence 99985 99999999999999999999995 99999999 899999999 888642 1 2578999999999999
Q ss_pred HHhc---CCchHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHH
Q 015501 323 IKKW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYL 398 (405)
Q Consensus 323 i~~~---G~~~~~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E 398 (405)
++.| |++.| ++|.++++++++|+.. .|++.+++++ +.+| +||+ +|++||+||++|++|++++++.++|+++|
T Consensus 220 i~~k~~kg~t~~-g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E 295 (321)
T PTZ00325 220 VKAKEGAGSATL-SMAYAAAEWSTSVLKALRGDKGIVECA-FVES-DMRP-ECPFFSSPVELGKEGVERVLPIGPLNAYE 295 (321)
T ss_pred HhcccCCCCchH-HHHHHHHHHHHHHHhhcCCCCCeEEEE-EEec-CCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHH
Confidence 9976 55655 5888888888888854 4588899995 9999 7997 79999999999999999999438999999
Q ss_pred HHHHhh
Q 015501 399 RKRIAK 404 (405)
Q Consensus 399 ~~~l~~ 404 (405)
+++|++
T Consensus 296 ~~~l~~ 301 (321)
T PTZ00325 296 EELLEA 301 (321)
T ss_pred HHHHHH
Confidence 999985
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=413.54 Aligned_cols=280 Identities=24% Similarity=0.298 Sum_probs=236.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE--ecCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i--~~~~~eal~dA 173 (405)
|||+||||+|.||+++++.|.. .+... ++.| +|+++ ..+++++|+.|.. ....+.. ..+.+++++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~---el~L----~d~~~-~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGS---ELSL----YDIAP-VTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCcc---EEEE----EecCC-CCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 6999999889999999999865 34322 3444 34443 3678899998742 1122332 12338999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH----HHCCCCCC-Cceeecc
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNFHALT 248 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~----k~s~~~~~-k~ig~gt 248 (405)
|+||+++|.+++++++|.+++.+|+++++++++.|++++ |+++|+++|||+|+||++++ |.+ ++|+ |+||+|+
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~D~~t~~~~~~~~~~s-g~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAG-VYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 999999999999999999999999999999999999996 99999999999999999987 776 5775 9999986
Q ss_pred hhhHHHHHHHHHHHhCCCCCCceeEEEEeecCC-CcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc-
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW- 326 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~-~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~- 326 (405)
||++|++++||+++|+++++|+. +||||||+ +|||+||++ +|.|+.+ + ..+++.++++++|++|++.|
T Consensus 149 -Lds~R~~~~ia~~l~~~~~~v~~-~v~GeHg~~s~~p~~S~~--~g~~l~~----~--~~~~i~~~v~~~g~~ii~~k~ 218 (312)
T PRK05086 149 -LDVIRSETFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQV--PGVSFTE----Q--EVADLTKRIQNAGTEVVEAKA 218 (312)
T ss_pred -HHHHHHHHHHHHHhCCChhheEE-EEEEecCCCceecccccc--CCccCCH----H--HHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999995 99999977 999999999 8988843 1 15789999999999999987
Q ss_pred --CCchHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHHH
Q 015501 327 --GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRI 402 (405)
Q Consensus 327 --G~~~~~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~l 402 (405)
|.+.| ++|.++++++++|+.+ .|++.++|++ +.+| + |. +|+|||+||++|++|++++++ + +|+++|+++|
T Consensus 219 ~~g~t~~-~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l 292 (312)
T PRK05086 219 GGGSATL-SMGQAAARFGLSLVRALQGEQGVVECA-YVEG-D-GK-YARFFAQPVLLGKNGVEERLP-IGTLSAFEQNAL 292 (312)
T ss_pred CCCCchh-hHHHHHHHHHHHHHhcCCCCCcEEEEE-EEec-c-CC-cceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHHH
Confidence 55555 5889999999999866 5688899976 8888 4 75 789999999999999999996 7 9999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 293 ~~ 294 (312)
T PRK05086 293 EG 294 (312)
T ss_pred HH
Confidence 85
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=412.16 Aligned_cols=283 Identities=24% Similarity=0.289 Sum_probs=237.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc---ccccC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFE 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~---~eal~ 171 (405)
.+.||+||||+|+||+++++.|+.++++++ +.| +|+++ ++|+++||.|+.... .+.-.+++ |++++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~e---l~L----~Di~~--~~g~a~Dl~~~~~~~--~i~~~~~~~d~~~~l~ 85 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSE---LHL----YDIAN--TPGVAADVSHINTPA--QVRGFLGDDQLGDALK 85 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCE---EEE----EecCC--CCeeEchhhhCCcCc--eEEEEeCCCCHHHHcC
Confidence 467999999779999999999999988763 544 44444 789999999987422 33321233 89999
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh----HHHHHHHHHCCCCCCCceeec
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN----TNALICLKNAPSIPAKNFHAL 247 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d----~~t~~~~k~s~~~~~k~ig~g 247 (405)
|||+||+++|.|++||++|.+++..|.++++++++.+++++ |+++|+++|||+| ++++++++.++..|.|+||++
T Consensus 86 ~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 86 GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence 99999999999999999999999999999999999999997 9999999999999 899999998853334899998
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCC-CcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh-
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK- 325 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~-~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~- 325 (405)
+ ||++|+++++|+++|+++.+|++ +|+||||+ +|||+||++++. .+ +.++ ..+++.++++++|++|++.
T Consensus 165 ~-LDs~Rl~~~lA~~lgv~~~~V~~-~ViGeHg~~s~vp~~S~~~~~----~~-~~~~--~~~~i~~~v~~~g~~Ii~~k 235 (323)
T PLN00106 165 T-LDVVRANTFVAEKKGLDPADVDV-PVVGGHAGITILPLLSQATPK----VS-FTDE--EIEALTKRIQNGGTEVVEAK 235 (323)
T ss_pred c-chHHHHHHHHHHHhCCChhheEE-EEEEeCCCccEeeehhcceec----cc-CCHH--HHHHHHHHHHHHHHHHHhCc
Confidence 6 99999999999999999999996 99999965 999999999743 23 2111 2578999999999999996
Q ss_pred --cCCchHHHHHHHHHHHHHHhhcCC-CCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHH
Q 015501 326 --WGRSSAASTAVSIVDAMKSLVTPT-PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKR 401 (405)
Q Consensus 326 --~G~~~~~s~A~~i~~ai~~~~~~~-~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~ 401 (405)
+|.+.| ++|.++++++++|+.+. +++.++|++ +.+| +| .+++|||+||+||++|++++++ + +|+++|+++
T Consensus 236 ~~kg~t~~-~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~-~~--~~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~ 309 (323)
T PLN00106 236 AGAGSATL-SMAYAAARFADACLRGLNGEADVVECS-YVQS-EV--TELPFFASKVRLGRNGVEEVLG-LGPLSEYEQKG 309 (323)
T ss_pred cCCCCchH-HHHHHHHHHHHHHHhccCCCceEEEEE-EECc-cc--CCceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHH
Confidence 466655 58889999999888532 477999999 7777 45 2239999999999999999996 7 999999999
Q ss_pred Hhh
Q 015501 402 IAK 404 (405)
Q Consensus 402 l~~ 404 (405)
|++
T Consensus 310 l~~ 312 (323)
T PLN00106 310 LEA 312 (323)
T ss_pred HHH
Confidence 985
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=391.24 Aligned_cols=251 Identities=36% Similarity=0.531 Sum_probs=219.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCCCcEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dADiVI 177 (405)
|+||||+|++|+++++.|+..+... ...|.| +|.+++++++.++||+|+.... ..+++.+++.|++++|||+||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~---~~el~L--~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLL---AIELVL--YDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVI 75 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCc---ceEEEE--EeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEE
Confidence 6899977999999999999988311 123444 4556689999999999987544 346666566699999999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC-CCceeecchhhHHHHH
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDENRAK 256 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~-~k~ig~gt~LDs~R~~ 256 (405)
++++.++++|++|.+++.+|+++++++++.|+++| |++|+|++|||+|++|++++|++ ++| .|+||+|| ||+.|++
T Consensus 76 ~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~s-g~~~~kviG~~~-ld~~r~~ 152 (263)
T cd00650 76 ITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYS-GLPKEKVIGLGT-LDPIRFR 152 (263)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCchhEEEeec-chHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999998 566 59999999 9999999
Q ss_pred HHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHHH
Q 015501 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTAV 336 (405)
Q Consensus 257 ~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A~ 336 (405)
+++|+++++++++|+ .+|||+||++++|+||+++ .+..+.
T Consensus 153 ~~la~~l~v~~~~v~-~~v~G~hg~~~~~~~s~~~---------------------------------------~a~~~~ 192 (263)
T cd00650 153 RILAEKLGVDPDDVK-VYILGEHGGSQVPDWSTVR---------------------------------------IATSIA 192 (263)
T ss_pred HHHHHHhCCCccceE-EEEEEcCCCceEeccccch---------------------------------------HHHHHH
Confidence 999999999999999 5999999999999999975 233444
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 337 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 337 ~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.++++ |+ +|++.++|++++++| +||+|+|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 193 ~ii~a---i~--~~~~~~~~v~v~~~g-~ygi~~~~~~s~P~~i~~~Gi~~~~~-~~l~~~e~~~l~~ 253 (263)
T cd00650 193 DLIRS---LL--NDEGEILPVGVRNNG-QIGIPDDVVVSVPCIVGKNGVEEPIE-VGLTDFELEKLQK 253 (263)
T ss_pred HHHHH---HH--cCCCEEEEEEEEeCC-ccCCcCCEEEEEEEEEeCCceEEEec-CCCCHHHHHHHHH
Confidence 55554 44 689999999999999 89988999999999999999999996 9999999999985
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=308.16 Aligned_cols=287 Identities=25% Similarity=0.285 Sum_probs=225.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe---cCccccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELF 170 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---~~~~eal 170 (405)
.++.||+|.||+|.||+.+...|...++.++ |.|||+. ...|++.||.|..... .+.-. .+.++++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~-----LaLYDi~----~~~GVaaDlSHI~T~s--~V~g~~g~~~L~~al 94 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSE-----LALYDIA----NTPGVAADLSHINTNS--SVVGFTGADGLENAL 94 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccce-----eeeeecc----cCCcccccccccCCCC--ceeccCChhHHHHHh
Confidence 4579999999999999999999999888764 5555442 5689999999986431 23222 2467899
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHH---HHHCCCCCCCceeec
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHAL 247 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~---~k~s~~~~~k~ig~g 247 (405)
++||+||+.+|.||||||+|.||+..|+.|+++++..+.++| |++.+.++|||+|....++ .|..+.++++.+...
T Consensus 95 ~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~c-P~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 95 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCC-PNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred cCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhC-ccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 999999999999999999999999999999999999999998 9999999999999765543 566777877666667
Q ss_pred chhhHHHHHHHHHHHhCCCC-CCceeEEEEeec-CCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh
Q 015501 248 TRLDENRAKCQLALKAGVFY-DKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~-~~V~~~~V~G~H-G~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~ 325 (405)
|.||..|++.++++.++++| ++++ ++|+|.| |.|.+|++|+.. |...+-.+ ..+.++.+++..|.|+.+.
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~----p~~~~~~~---~~~~Lt~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCK----PPFRFTDD---EIEALTHRIQNGGTEVVKA 245 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCC----CcccCCHH---HHHHHHHHHHhCCceEEEe
Confidence 88999999999999999999 5577 8999999 569999999987 54433222 2467889999999998875
Q ss_pred cC-CchH-HHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHH
Q 015501 326 WG-RSSA-ASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402 (405)
Q Consensus 326 ~G-~~~~-~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l 402 (405)
|- ..++ .|.|++-++...+++.+ .++..+.-|+.+-.- .+++| ||+.|+++|++|++++..-.+|+++|++.|
T Consensus 246 KaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~-~~~~~---fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l 321 (345)
T KOG1494|consen 246 KAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASP-VTELP---FFATPVTLGKKGVEEVLGLGKLSDYEEKAL 321 (345)
T ss_pred ccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEecc-ccCcc---ceeceEEecCCceeeecCCCccCHHHHHHH
Confidence 43 3333 45555544444444433 334555556543222 46764 999999999999999997778999999998
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 322 ~~ 323 (345)
T KOG1494|consen 322 EA 323 (345)
T ss_pred HH
Confidence 75
|
|
| >PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=256.99 Aligned_cols=153 Identities=29% Similarity=0.440 Sum_probs=137.2
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhh----ccccHHHHHHHHHhhhHHHH
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLI 323 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~----~~~~~~el~~~v~~~~~~ii 323 (405)
|.||++||+++||+++|++|++|+ ++||||||++|||+||+++|+|.|+.++... .++..+++.+.+++++++++
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~-~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVN-AYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEE-EEEEBSSSTTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceE-EEEEecCCcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 789999999999999999999998 5999999999999999999999999876543 23556789999999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCc-eEEEEeEEEcCCCceeeecCCCCCHHHHHHH
Q 015501 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAED-IVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402 (405)
Q Consensus 324 ~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~d-v~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l 402 (405)
+.||++++.++|.++++++++|+ .|++.++|+|++++| +||++.+ +|||+||++|++|+++++++++|+++|+++|
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail--~~~~~i~~~sv~~~g-~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l 156 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAIL--KDERRILPVSVYLDG-EYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQEKL 156 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHH--TTHTEEEEEEEEEES-GGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHHHh--hcccccccceecccc-ccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHHHH
Confidence 99944444568999999999999 578999999999999 7999755 9999999999999999996699999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 157 ~~ 158 (174)
T PF02866_consen 157 KE 158 (174)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T .... |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=278.22 Aligned_cols=284 Identities=17% Similarity=0.202 Sum_probs=204.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCC-CCc-eEEEeccccchhhhHH---HHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP-DQP-IALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~-d~~-i~L~l~~~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
+||+|||| ||+.++.|+..-+... +-+ -.|.|+|+|. ++++ ..+..+.+.. ....++..++|..+|++
T Consensus 1 ~KI~iIGg----GS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~Rl~~v~~l~~~~~~~~-g~~~~v~~ttD~~~Al~ 73 (425)
T cd05197 1 VKIAIIGG----GSSFTPELVSGLLKTPEELPISEVTLYDIDE--ERLDIILTIAKRYVEEV-GADIKFEKTMDLEDAII 73 (425)
T ss_pred CEEEEECC----chHhHHHHHHHHHcChhhCCCCEEEEEcCCH--HHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhC
Confidence 69999998 4445555543322111 111 2444555543 4444 3444444433 23346888899999999
Q ss_pred CCcEEEEe---CCc---------CCCCCC---c-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHH
Q 015501 172 DAEWALLI---GAK---------PRGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (405)
Q Consensus 172 dADiVIi~---~g~---------~~k~g~---~-----r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~ 231 (405)
|||+||.+ ||. |.|.|. + ......+|++++.++++.|+++| |++|+|++|||+|++|++
T Consensus 74 gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~di~t~a 152 (425)
T cd05197 74 DADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAGEVTEA 152 (425)
T ss_pred CCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHHHHHHH
Confidence 99999985 332 335543 2 34556899999999999999997 999999999999999999
Q ss_pred HHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhhh----h---
Q 015501 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIK----D--- 303 (405)
Q Consensus 232 ~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~~----~--- 303 (405)
+++.+| ..|+||+|+. +.|+++++|+.+|+++++|+. +++| ||| ++||+++++|+++.+.+. +
T Consensus 153 ~~~~~p--~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~-~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~ 223 (425)
T cd05197 153 VRRYVP--PEKAVGLCNV--PIGVMEIVAKLLGESEEKVDW-QYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSK 223 (425)
T ss_pred HHHhCC--CCcEEEECCC--HHHHHHHHHHHhCCCHHHeEE-EEEeccCe----EeeEeEEECCeecHHHHHHHHhccCc
Confidence 998853 2499999999 999999999999999999995 8999 997 999999999988764322 1
Q ss_pred -----c-------ccc------------------------HHH-HHH---------HHHhhhH---HH------------
Q 015501 304 -----H-------KWL------------------------EEG-FTE---------TIQKRGG---LL------------ 322 (405)
Q Consensus 304 -----~-------~~~------------------------~~e-l~~---------~v~~~~~---~i------------ 322 (405)
. .|. .++ +.+ .+.+... +.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 303 (425)
T cd05197 224 DWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVE 303 (425)
T ss_pred cccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhh
Confidence 0 010 000 000 0111100 01
Q ss_pred HHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHH
Q 015501 323 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402 (405)
Q Consensus 323 i~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l 402 (405)
...+|...++..|+.|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|+.++-- .+|.+.....+
T Consensus 304 ~~~r~~~~~~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~~Li 377 (425)
T cd05197 304 LIKRGGRKYSEAAIPLIRALL-----NDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVKGLL 377 (425)
T ss_pred hhhcCCcccHHHHHHHHHHHH-----cCCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHHHHH
Confidence 112344556788889988888 789999999999999888999999999999999999999764 57887766655
Q ss_pred h
Q 015501 403 A 403 (405)
Q Consensus 403 ~ 403 (405)
+
T Consensus 378 ~ 378 (425)
T cd05197 378 R 378 (425)
T ss_pred H
Confidence 4
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=272.52 Aligned_cols=282 Identities=16% Similarity=0.131 Sum_probs=207.6
Q ss_pred CCEEEEEcCCCchHHHHHH--HHH-hcccCCCCCceEEEeccccchhhhHH-HHHHHhhhhcCC--CcceEEEecCcccc
Q 015501 96 MVNIAVSGAAGMIANHLLF--KLA-AGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFP--LLREVKIGINPYEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~--~L~-~~~~~~~d~~i~L~l~~~d~~~~~l~-g~a~DL~d~~~~--~~~~v~i~~~~~ea 169 (405)
|+||+|||| |++|++.++ .++ ..++.+ .+|.| +|+++++++ +.++ +.+.... ...+++.+++.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~--~evvL----vDid~er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRD--AEIAL----MDIDPERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCC--CEEEE----ECCCHHHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 579999995 999998777 776 334433 13544 455556666 4444 5554312 22356666777999
Q ss_pred cCCCcEEEEeCCcC-CCCC--------------Cchhhh--------HHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 170 FEDAEWALLIGAKP-RGPG--------------MERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 170 l~dADiVIi~~g~~-~k~g--------------~~r~~l--------l~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++|||+||++.+.+ ++++ ++|.+. +.+|+++++++++.|+++| |+||+|++|||+|
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcCChHH
Confidence 99999999987765 4444 456677 8999999999999999998 9999999999999
Q ss_pred HHHHHHHHHCCCCCCCceeec-chhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhhhh-
Q 015501 227 TNALICLKNAPSIPAKNFHAL-TRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD- 303 (405)
Q Consensus 227 ~~t~~~~k~s~~~~~k~ig~g-t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~~~- 303 (405)
++|++++++ + +.|+||+| +.+|+. +.+|+.+|+++++|+. ++.| || +.||.+.+.+|+.+...+.+
T Consensus 152 ivt~~~~~~-~--~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~-~~~GlNH----~~W~~~~~~~G~D~~p~l~~~ 220 (431)
T PRK15076 152 MNTWAMNRY-P--GIKTVGLCHSVQGTA---EQLARDLGVPPEELRY-RCAGINH----MAWYLELERKGEDLYPELRAA 220 (431)
T ss_pred HHHHHHhcC-C--CCCEEEECCCHHHHH---HHHHHHhCCCHHHeEE-EEEeecc----hhhheeeeECCcchHHHHHHH
Confidence 999999743 2 24999999 999986 8899999999999995 8899 99 88999999988765432211
Q ss_pred ---c-------------------------------ccc----HHHHHHHHH-------hhh-------HHHH-HhcCC--
Q 015501 304 ---H-------------------------------KWL----EEGFTETIQ-------KRG-------GLLI-KKWGR-- 328 (405)
Q Consensus 304 ---~-------------------------------~~~----~~el~~~v~-------~~~-------~~ii-~~~G~-- 328 (405)
. .|. .++..+... +++ .+.. ...+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (431)
T PRK15076 221 AAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAER 300 (431)
T ss_pred HhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCc
Confidence 0 011 111111110 011 1111 22333
Q ss_pred ---chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 329 ---SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 329 ---~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
..++..|+.|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|+.++.. .+|.+..+..++
T Consensus 301 ~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~ 372 (431)
T PRK15076 301 IEIKRSREYASTIIEAIE-----TGEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNR 372 (431)
T ss_pred cccccchHHHHHHHHHHh-----cCCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHH
Confidence 235677888888887 789999999999999888999999999999999999999874 689888877765
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=265.66 Aligned_cols=285 Identities=19% Similarity=0.192 Sum_probs=205.1
Q ss_pred CEEEEEcCCCchHH-HHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHH---HHHhhhhcCCCcceEEEecCcccccC
Q 015501 97 VNIAVSGAAGMIAN-HLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGV---AMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs-~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~---a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
+||+|||| |++-. .+...|+.. .-++ .. .|.|+|+|. +++++.. +.++.+.. ....++..+++..+|++
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~-~~--ei~L~Did~-~~rl~~v~~~~~~~~~~~-~~~~~v~~t~d~~~al~ 74 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELP-VT--ELVLVDIDE-EEKLEIVGALAKRMVKKA-GLPIKVHLTTDRREALE 74 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCC-CC--EEEEecCCh-HHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhC
Confidence 69999997 44311 133344442 2122 12 445566663 5666543 33333332 22346777899999999
Q ss_pred CCcEEEEeCCcCCCCCCchh--------------------hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHH
Q 015501 172 DAEWALLIGAKPRGPGMERA--------------------GLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~--------------------~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~ 231 (405)
|||+||++.+..+.+++++. ....+|++++.++++.|+++| |+||+|++|||+|++|++
T Consensus 75 gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~ivt~a 153 (419)
T cd05296 75 GADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAGIVTEA 153 (419)
T ss_pred CCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHH
Confidence 99999998655444444333 236899999999999999998 999999999999999999
Q ss_pred HHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHh-hhh-------
Q 015501 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKE-IIK------- 302 (405)
Q Consensus 232 ~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~-~~~------- 302 (405)
+++.+ +.|+||+|+. +.|+++++|+.+|+++++|+. +++| || +.|+.+.+.+|+.+.. ++.
T Consensus 154 ~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~ 223 (419)
T cd05296 154 VLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFI-DYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALLS 223 (419)
T ss_pred HHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceE-EEEeccc----ceeeeeeeECCcccHHHHHHHhhhccc
Confidence 99876 4699999987 699999999999999999995 8999 99 8899999988876553 111
Q ss_pred ---hcccc--------------------HHHHHHH-HH---hhh-------HHH---------------HHhcCCchHHH
Q 015501 303 ---DHKWL--------------------EEGFTET-IQ---KRG-------GLL---------------IKKWGRSSAAS 333 (405)
Q Consensus 303 ---~~~~~--------------------~~el~~~-v~---~~~-------~~i---------------i~~~G~~~~~s 333 (405)
+..|. .++..+. .. .++ .++ +..+++..|+.
T Consensus 224 ~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~e 303 (419)
T cd05296 224 FEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYSE 303 (419)
T ss_pred cccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchHH
Confidence 00010 0111111 00 011 111 12445555778
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 334 ~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.|..++++|. +|++.++.++|.++|..-++|+|+++++||+++++|+.++-. -+|.+.....++.
T Consensus 304 ~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~ 368 (419)
T cd05296 304 AALALISAIY-----NDKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQ 368 (419)
T ss_pred HHHHHHHHHh-----cCCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHH
Confidence 8899988888 789999999999999888999999999999999999999754 5788888776653
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=237.69 Aligned_cols=141 Identities=31% Similarity=0.450 Sum_probs=127.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||||+|+||+++++.|+.+++.++ |.| +|+++++++|+++||+|+.+.+..++.++.++|++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~e---i~L----~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADE---IVL----IDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSE---EEE----EESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCc---eEE----eccCcccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 6999999779999999999999998764 555 567778999999999999866656788888999999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCcee
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig 245 (405)
|+++|.|++||++|.+++..|+++++++++.|++++ |+++++++|||+|++|++++++++..|+|+||
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 999999999999999999999999999999999997 99999999999999999999999655558887
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=250.75 Aligned_cols=279 Identities=14% Similarity=0.136 Sum_probs=195.6
Q ss_pred CEEEEEcCCCchHHHHHHHHH----hcc-cCCCCCceEEEeccccchhhhHH---HHHHHhhhhcCCCcceEEEecCccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLA----AGE-VLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYE 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~----~~~-~~~~d~~i~L~l~~~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~e 168 (405)
|||+|||| ||+.++.|+ ... .++ ..+|. |+|+| +++++ ..+..+.+.. ....+++.|+|..|
T Consensus 1 ~KI~iIGa----GS~~tp~li~~l~~~~~~l~-~~ei~--L~DId--~~rl~~v~~l~~~~~~~~-g~~~~v~~Ttdr~e 70 (437)
T cd05298 1 FKIVIAGG----GSTYTPGIVKSLLDRKEDFP-LRELV--LYDID--AERQEKVAEAVKILFKEN-YPEIKFVYTTDPEE 70 (437)
T ss_pred CeEEEECC----cHHHHHHHHHHHHhCcccCC-CCEEE--EECCC--HHHHHHHHHHHHHHHHhh-CCCeEEEEECCHHH
Confidence 69999998 444544444 331 122 12344 54444 34444 3344444433 33347888899999
Q ss_pred ccCCCcEEEEe---CCc---------CCCCCC---c-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 169 LFEDAEWALLI---GAK---------PRGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 169 al~dADiVIi~---~g~---------~~k~g~---~-----r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
|++|||+||.+ ||. |.|+|. + ......||++++.++++.|+++| |+||+|++|||+|++
T Consensus 71 Al~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~~v 149 (437)
T cd05298 71 AFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAAIV 149 (437)
T ss_pred HhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHHHH
Confidence 99999999985 332 345553 2 33457899999999999999998 999999999999999
Q ss_pred HHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEc-CcchHhhhh----
Q 015501 229 ALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARIN-GLPVKEIIK---- 302 (405)
Q Consensus 229 t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~-G~p~~~~~~---- 302 (405)
|+++++..+. .|+||.|.. ..-++..+|+.+|+++++|+ +-+.| || +.|+.+.+.+ |+.+...+.
T Consensus 150 t~~~~~~~~~--~kviGlC~~--~~~~~~~la~~lg~~~~~v~-~~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~ 220 (437)
T cd05298 150 AEALRRLFPN--ARILNICDM--PIAIMDSMAAILGLDRKDLE-PDYFGLNH----FGWFTKIYDKQGEDLLPKLREHVK 220 (437)
T ss_pred HHHHHHHCCC--CCEEEECCc--HHHHHHHHHHHhCCCHHHce-EEEEeecc----hhhhhheEECCCCchHHHHHHHHh
Confidence 9999887432 499999987 67789999999999999999 47799 99 8899999999 877653322
Q ss_pred hcc--------------cc---------------------------HHHHHHH-----------HHhhhHHHH-------
Q 015501 303 DHK--------------WL---------------------------EEGFTET-----------IQKRGGLLI------- 323 (405)
Q Consensus 303 ~~~--------------~~---------------------------~~el~~~-----------v~~~~~~ii------- 323 (405)
+.. |. .++..+. +++...+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~ 300 (437)
T cd05298 221 ENGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKII 300 (437)
T ss_pred ccCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhh
Confidence 111 10 0011011 111111110
Q ss_pred --------HhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCC
Q 015501 324 --------KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIF 394 (405)
Q Consensus 324 --------~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L 394 (405)
..++. .+++.+..++++|. +|++.++++||+++| .| ++|+|+++|+||+||++|+.++.- .+|
T Consensus 301 ~~~~~~~~~~~~~-~ya~~a~~ii~aI~-----~d~~~~~~vnv~n~G-~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~l 372 (437)
T cd05298 301 ETGTAEGSTFHVD-VHGEYIVDLAASIA-----YNTKERFLVIVENNG-AIPNLPDDAMVEVPAYIGSNGPEPLVV-GKI 372 (437)
T ss_pred hcCChhhhhhhcc-chHHHHHHHHHHHH-----cCCCeEEEEEeecCC-ccCCCCCCcEEEEEEEEeCCCceeccc-CCC
Confidence 11221 14566667767766 799999999999999 56 578999999999999999999864 578
Q ss_pred CHHHHHHHh
Q 015501 395 DDYLRKRIA 403 (405)
Q Consensus 395 ~~~E~~~l~ 403 (405)
.+.....++
T Consensus 373 P~~~~~l~~ 381 (437)
T cd05298 373 PTFYKGLME 381 (437)
T ss_pred CHHHHHHHH
Confidence 888777654
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=250.31 Aligned_cols=283 Identities=16% Similarity=0.113 Sum_probs=212.3
Q ss_pred CEEEEEcCCCchHHHHHH--HHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--CcceEEEecCcccccC
Q 015501 97 VNIAVSGAAGMIANHLLF--KLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~--~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~~~~~eal~ 171 (405)
+||+|||| |.+|++++. .++.. .+.+ .+|.| .|+++++++....++.+.... ...+++.+++.+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g--~eV~L----~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSG--STIAL----MDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCC--CEEEE----ECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 58999995 999999777 56644 3333 24555 466778888888877665422 2246777778889999
Q ss_pred CCcEEEEeCCcCCCCCCch----------------------hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 172 DAEWALLIGAKPRGPGMER----------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r----------------------~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
|||+||++.+....++.++ .....+|++++.++++.+.++| |++|++++|||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~-p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELC-PDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHC-CCCEEEEcCChHHHHH
Confidence 9999999866444444333 4567899999999999999997 9999999999999999
Q ss_pred HHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhhhh---c-
Q 015501 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---H- 304 (405)
Q Consensus 230 ~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~~~---~- 304 (405)
+++++.++ .|+||+|+. +.|++..+|+.+|+++++|+. +++| || +.||...+.+|+.+.+.+.+ +
T Consensus 153 ~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~ 222 (423)
T cd05297 153 WALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDY-QVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEG 222 (423)
T ss_pred HHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEE-EEEeecc----HhhhhhheECCcchHHHHHHHHhcc
Confidence 99999875 599999988 899999999999999999995 8899 99 88999999988766533221 0
Q ss_pred --c------cc-----------H------HHH------H-HHHHh-----------------hhHH-H----------HH
Q 015501 305 --K------WL-----------E------EGF------T-ETIQK-----------------RGGL-L----------IK 324 (405)
Q Consensus 305 --~------~~-----------~------~el------~-~~v~~-----------------~~~~-i----------i~ 324 (405)
. |. . .+. . +.+.. .-+. . ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (423)
T cd05297 223 SEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEE 302 (423)
T ss_pred CccchhcccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchh
Confidence 0 00 0 000 0 00000 0000 0 01
Q ss_pred hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 325 ~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
..+...++..|+.++++|. +|++.++.++|.++|..-|+|+|.++++||+|+++|+.++-. .+|.+.....++
T Consensus 303 ~~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~ 375 (423)
T cd05297 303 LDPVKRSGEYASPIIEALV-----TGKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIR 375 (423)
T ss_pred ccccccchHHHHHHHHHHh-----cCCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHH
Confidence 1222335677888888887 789999999999999888999999999999999999999764 678888777654
|
linked to 3D####ucture |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=236.89 Aligned_cols=286 Identities=18% Similarity=0.217 Sum_probs=204.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCC-Cc-eEEEeccccchhhhHHH---HHHHhhhhcCCCcceEEEecCcccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPD-QP-IALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYEL 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d-~~-i~L~l~~~d~~~~~l~g---~a~DL~d~~~~~~~~v~i~~~~~ea 169 (405)
+..||+|||| ||+..+.++.+.+...+ -+ ..|.|+|+| +++++. .+..|.+.. ....++..+++..+|
T Consensus 2 ~~~KI~iIGg----GSt~tp~~v~g~l~~~e~l~~~el~L~Did--~~r~~~i~~~~~~~v~~~-g~~~kv~~ttd~~eA 74 (442)
T COG1486 2 KKFKIVIIGG----GSTYTPKLLLGDLARTEELPVRELALYDID--EERLKIIAILAKKLVEEA-GAPVKVEATTDRREA 74 (442)
T ss_pred CcceEEEECC----CccccHHHHHHHHhcCccCCcceEEEEeCC--HHHHHHHHHHHHHHHHhh-CCCeEEEEecCHHHH
Confidence 4579999998 55555555554443221 11 255565554 455552 222232222 233567888999999
Q ss_pred cCCCcEEEEe---CC---------cCCCCCCc--------hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 170 FEDAEWALLI---GA---------KPRGPGME--------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 170 l~dADiVIi~---~g---------~~~k~g~~--------r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
|+|||||+.+ |+ .|.|+|.- ......|+++++.+|++.|+++| |+||++++|||+.++|
T Consensus 75 l~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP~~~vT 153 (442)
T COG1486 75 LEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNPAAIVT 153 (442)
T ss_pred hcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccChHHHHH
Confidence 9999999985 33 34555532 22345799999999999999998 9999999999999999
Q ss_pred HHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCC-CCceeEEEEe-ecCCCcccccccceEcCcchHhhh-h---h
Q 015501 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEII-K---D 303 (405)
Q Consensus 230 ~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~-~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~-~---~ 303 (405)
.++.++.+. -|+||.|.+ ..-....||+.||+.+ ++++ +-+.| || +.||..++.+|.++.+-+ . +
T Consensus 154 eAv~r~~~~--~K~VGlCh~--~~g~~~~lAe~L~~~~~~~l~-~~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~ 224 (442)
T COG1486 154 EAVRRLYPK--IKIVGLCHG--PIGIAMELAEVLGLEPREDLR-YRVAGLNH----MVWILRVRDDGEDLYPELLEALEE 224 (442)
T ss_pred HHHHHhCCC--CcEEeeCCc--hHHHHHHHHHHhCCCchhcee-EEEeechh----hhhhhHhhhcCccchHHHHHHHhc
Confidence 999998752 299999988 6788999999999975 9998 57899 99 888988888886543211 1 0
Q ss_pred c--------------ccc-----------------------------HHHH------HHHHHhhhHHH------------
Q 015501 304 H--------------KWL-----------------------------EEGF------TETIQKRGGLL------------ 322 (405)
Q Consensus 304 ~--------------~~~-----------------------------~~el------~~~v~~~~~~i------------ 322 (405)
. .|. .+++ .+.+.++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~ 304 (442)
T COG1486 225 GGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEK 304 (442)
T ss_pred cccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcC
Confidence 0 010 0001 01122211111
Q ss_pred ---HHhcCCc--hHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHH
Q 015501 323 ---IKKWGRS--SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 397 (405)
Q Consensus 323 ---i~~~G~~--~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~ 397 (405)
..+++.+ .++..|+.|+++|. +|++.++.++|.++|..-++|+|.++++||+++++|+.++.. ..|.+.
T Consensus 305 p~~~~~~~~~~~~~~e~a~~ii~Ai~-----~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~ 378 (442)
T COG1486 305 PEELEKRIGAGKYSSEYASNIINAIE-----NNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEF 378 (442)
T ss_pred chhhhhcCCcccccHHHHHHHHHHHh-----cCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHH
Confidence 1234443 55778899998888 899999999999999989999999999999999999999874 899998
Q ss_pred HHHHHh
Q 015501 398 LRKRIA 403 (405)
Q Consensus 398 E~~~l~ 403 (405)
....+.
T Consensus 379 ~~~l~~ 384 (442)
T COG1486 379 VKGLMH 384 (442)
T ss_pred HHHHHH
Confidence 887665
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=155.41 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=111.4
Q ss_pred EEEEEcCCCchHHH-HHH-HHHhcccCCCCCceEEEeccccchhhhHH---HHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 98 NIAVSGAAGMIANH-LLF-KLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 98 KI~IIGAaG~VGs~-la~-~L~~~~~~~~d~~i~L~l~~~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
||+|||| |++-.. ... .+...+-++. -.+.|+|+ ++++|+ ..+..+.+.. ....+++.++|..||++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~---~ei~L~Di--d~~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSG---SEIVLMDI--DEERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTE---EEEEEE-S--CHHHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCC---cEEEEEcC--CHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 8999997 666655 222 3333333321 24555544 446666 4445454443 334578889999999999
Q ss_pred CcEEEEeC---C---------cCCCCCCc----------hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 015501 173 AEWALLIG---A---------KPRGPGME----------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (405)
Q Consensus 173 ADiVIi~~---g---------~~~k~g~~----------r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (405)
||+||.+. + .|.+.|.. ......|+++++.++++.|+++| |+||+||+|||+.++|.
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChHHHHHH
Confidence 99999863 2 35666642 33457899999999999999998 99999999999999999
Q ss_pred HHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCC
Q 015501 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265 (405)
Q Consensus 231 ~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v 265 (405)
++.+.+++. |++|.|.. ..-+...+|+.||+
T Consensus 153 a~~r~~~~~--k~vGlCh~--~~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRYTPKI--KVVGLCHG--PQGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHHSTTS--EEEEE-SH--HHHHHHHHHHHHT-
T ss_pred HHHHhCCCC--CEEEECCC--HHHHHHHHHHHhCc
Confidence 999988654 89999988 67889999999874
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=80.04 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=71.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh----h---c-C------CCcceEEEe
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----S---L-F------PLLREVKIG 163 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d----~---~-~------~~~~~v~i~ 163 (405)
||+|||| |.+|..+|..++..|+ ++.| +|.+.+.++.....+.+ . . . ....+++++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY-----EVTL----YDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-----EEEE----E-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC-----cEEE----EECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 7999995 9999999999999875 4655 34454444322211111 1 0 0 112467776
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCc
Q 015501 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN 243 (405)
Q Consensus 164 ~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ 243 (405)
++ ++++.+||+||-+. .++.++-+++-..+.++|+|++++ .||....-..-+.... ..|.|.
T Consensus 71 ~d-l~~~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i~~la~~~-~~p~R~ 132 (180)
T PF02737_consen 71 TD-LEEAVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSISELAAAL-SRPERF 132 (180)
T ss_dssp SS-GGGGCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-HHHHHTTS-STGGGE
T ss_pred cC-HHHHhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCHHHHHhcc-CcCceE
Confidence 65 55555999999763 235788889999999999788886 7775543332232333 244465
Q ss_pred eee
Q 015501 244 FHA 246 (405)
Q Consensus 244 ig~ 246 (405)
+|+
T Consensus 133 ig~ 135 (180)
T PF02737_consen 133 IGM 135 (180)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-06 Score=83.11 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=68.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh----hcC-C---------Ccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SLF-P---------LLR 158 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d----~~~-~---------~~~ 158 (405)
+..+.||+|||| |.+|..+|..++..|. ++.| +|++++.++.....+.. ... . ...
T Consensus 2 ~~~~~~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l----~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~ 71 (286)
T PRK07819 2 SDAIQRVGVVGA-GQMGAGIAEVCARAGV-----DVLV----FETTEELATAGRNRIEKSLERAVSRGKLTERERDAALA 71 (286)
T ss_pred CCCccEEEEEcc-cHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHh
Confidence 345679999995 9999999999998875 3555 45555554432111111 100 0 113
Q ss_pred eEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc-CCCeEEEEeCCchh
Q 015501 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCN 226 (405)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a-~p~a~vIvvtNP~d 226 (405)
+++.++ +++++++||+||-+. .++.++-+++-..+.++| +|++++ +||-..
T Consensus 72 ~l~~~~-~~~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~ 123 (286)
T PRK07819 72 RLRFTT-DLGDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSS 123 (286)
T ss_pred CeEeeC-CHHHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 455554 458899999999873 224566677777888887 677766 666443
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.9e-06 Score=81.88 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh----hhh--c----CCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL----EDS--L----FPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL----~d~--~----~~~~~~v~i~~~ 165 (405)
..||+|||| |.||+.+|..++..|+ ++.+ .|++++.++.....+ ... . .....+++..++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~-----~V~l----~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL-----DVVA----WDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 478999995 9999999999998875 3555 344444333211111 111 0 001134566666
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCcee
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig 245 (405)
..+++++||+|+.+. | +|.++-+++-..+.++++|++ |+.||-......-+.... ..|.|.+|
T Consensus 77 l~~av~~aDlViEav--p------------E~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~la~~~-~~p~R~~g 139 (321)
T PRK07066 77 IEACVADADFIQESA--P------------EREALKLELHERISRAAKPDA--IIASSTSGLLPTDFYARA-THPERCVV 139 (321)
T ss_pred HHHHhcCCCEEEECC--c------------CCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHHHHhc-CCcccEEE
Confidence 668899999999863 2 245677777788888886677 568887765444444433 34455555
Q ss_pred e
Q 015501 246 A 246 (405)
Q Consensus 246 ~ 246 (405)
+
T Consensus 140 ~ 140 (321)
T PRK07066 140 G 140 (321)
T ss_pred E
Confidence 3
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=74.19 Aligned_cols=103 Identities=21% Similarity=0.129 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEecCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~dAD 174 (405)
|||+|||++|.+|++++..|+..+. ++.+ .+++.++++..+.+..+... ....++.. ++..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-----~V~v----~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-----KIII----GSRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----EEEE----EEcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 5899998569999999999998762 3544 46666777666555433210 11112222 35678899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+||++.. .+.+.++.+.+.... .+..||-++||.+
T Consensus 71 vVilavp----------------~~~~~~~l~~l~~~l-~~~vvI~~~ngi~ 105 (219)
T TIGR01915 71 VVILAVP----------------WDHVLKTLESLRDEL-SGKLVISPVVPLA 105 (219)
T ss_pred EEEEECC----------------HHHHHHHHHHHHHhc-cCCEEEEeccCce
Confidence 9998843 133344444554443 3467888999975
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-05 Score=77.34 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh---hhh---cCCC---------cceE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL---EDS---LFPL---------LREV 160 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL---~d~---~~~~---------~~~v 160 (405)
++||+|||+ |.+|..+|..++..|. ++.+ +|++++.++.....+ .+. .... ..++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~-----~V~l----~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF-----DVTI----YDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 579999995 9999999999998764 3555 344444443221111 110 0000 1356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+++++..+++++||+||.+.. .+.++.+++.+.+.++++++++| ++|...
T Consensus 73 ~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt 122 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSST 122 (287)
T ss_pred EEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECccc
Confidence 666666678999999998732 12456667777777877556654 445443
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=78.92 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=89.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH---HHHHh-hhhc-----C-----CCcceEE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMEL-EDSL-----F-----PLLREVK 161 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g---~a~DL-~d~~-----~-----~~~~~v~ 161 (405)
.+||+|||| |.+|+.+|..++..|+ ++.| .|++++.++. .+... .... . ..+..++
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~-----~V~l----~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY-----DVVL----KDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARIT 72 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC-----ceEE----EeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcc
Confidence 579999995 9999999999999654 3655 3444343321 11111 1110 0 0112333
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC
Q 015501 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~ 241 (405)
. +.+++++++||+||-+. .+|.++-+++-..+.++++|++++ .||...+.-..+.+.+ ..|.
T Consensus 73 ~-~~~~~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~~~-~rpe 134 (307)
T COG1250 73 P-TTDLAALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAEAL-KRPE 134 (307)
T ss_pred c-cCchhHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHHHh-CCch
Confidence 3 34567999999999763 346788899999999999888887 8997754433333333 3445
Q ss_pred Cceeec------------------chhhHHHHHHHHHHHhCC
Q 015501 242 KNFHAL------------------TRLDENRAKCQLALKAGV 265 (405)
Q Consensus 242 k~ig~g------------------t~LDs~R~~~~lA~~l~v 265 (405)
|.+|+. |.=++...-..+++++|-
T Consensus 135 r~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK 176 (307)
T COG1250 135 RFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGK 176 (307)
T ss_pred hEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 655543 333555666677777773
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.4e-05 Score=71.85 Aligned_cols=124 Identities=26% Similarity=0.277 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
||+++|+| +|++|+.++..++..+. ++.+ ..-+.++++++.+..+.-. + ......+|.+.||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-----eV~i---gs~r~~~~~~a~a~~l~~~-------i-~~~~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-----EVII---GSSRGPKALAAAAAALGPL-------I-TGGSNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-----eEEE---ecCCChhHHHHHHHhhccc-------c-ccCChHHHHhcCCE
Confidence 78999999 59999999999998774 4554 1234455666555544321 1 23457899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh---------------HHHHHHHHHCCCCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---------------TNALICLKNAPSIP 240 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---------------~~t~~~~k~s~~~~ 240 (405)
||++ .|. +-+.++.+.++..- .+-+||-.|||.+ .-+.+++++.|+
T Consensus 64 VvLA--VP~--------------~a~~~v~~~l~~~~-~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~-- 124 (211)
T COG2085 64 VVLA--VPF--------------EAIPDVLAELRDAL-GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG-- 124 (211)
T ss_pred EEEe--ccH--------------HHHHhHHHHHHHHh-CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCC--
Confidence 9998 332 33445555555532 3668999999942 345566666543
Q ss_pred CCceeecchhhHHHH
Q 015501 241 AKNFHALTRLDENRA 255 (405)
Q Consensus 241 ~k~ig~gt~LDs~R~ 255 (405)
.|++.+-+.+...++
T Consensus 125 akVVkAFn~i~a~~l 139 (211)
T COG2085 125 AKVVKAFNTIPAAVL 139 (211)
T ss_pred cchhhhhcccCHHHh
Confidence 266665555554333
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-05 Score=77.38 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH-H------HHHhhhhc-C------CCcceEE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-V------AMELEDSL-F------PLLREVK 161 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g-~------a~DL~d~~-~------~~~~~v~ 161 (405)
+.||+|||+ |.||..++..++..+. ++.+ +|++.++++. . ..++.+.. . ....+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~-----~V~~----~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~ 72 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY-----DVVM----VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT 72 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC-----ceEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 568999995 9999999999998875 3554 4555555531 1 01111110 0 0112455
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC
Q 015501 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~ 241 (405)
+++ +++++++||+||++.. .+..+-.++.+.+.++++++++| +||-..+-...+.+.. ..|.
T Consensus 73 ~~~-~~~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~~~-~~~~ 134 (282)
T PRK05808 73 GTT-DLDDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAAAT-KRPD 134 (282)
T ss_pred EeC-CHHHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhh-CCCc
Confidence 554 4678999999999842 12455567777788887667766 5555443333333333 2344
Q ss_pred Cceee
Q 015501 242 KNFHA 246 (405)
Q Consensus 242 k~ig~ 246 (405)
|.+++
T Consensus 135 r~ig~ 139 (282)
T PRK05808 135 KVIGM 139 (282)
T ss_pred ceEEe
Confidence 55554
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.07 E-value=1e-05 Score=72.22 Aligned_cols=113 Identities=20% Similarity=0.181 Sum_probs=68.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-C---CCcceEEEecCcccccCCC
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-F---PLLREVKIGINPYELFEDA 173 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~---~~~~~v~i~~~~~eal~dA 173 (405)
||+|+|| |+.|.++|..|...+. ++.| ..++++.++..-..-.... . .+..++.++++..+++++|
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~-----~V~l----~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH-----EVTL----WGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE-----EEEE----ETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-----EEEE----EeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcc
Confidence 8999995 9999999999999883 3555 3444444443222111101 0 1123678888888999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-----chhHHHHHHHHHC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-----PCNTNALICLKNA 236 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-----P~d~~t~~~~k~s 236 (405)
|+||++ .| ...++++.+.+..+..++..+++++- ....+..++.+..
T Consensus 71 d~Iiia--vP--------------s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~ 122 (157)
T PF01210_consen 71 DIIIIA--VP--------------SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEIL 122 (157)
T ss_dssp SEEEE---S---------------GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHH
T ss_pred cEEEec--cc--------------HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHh
Confidence 999987 32 24567778888887644556665541 2234555555544
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.2e-05 Score=75.02 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh--------cCC------CcceE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--------LFP------LLREV 160 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~--------~~~------~~~~v 160 (405)
+.+||+|||+ |.+|..++..|+..|. ++.+ +|++++.++.....+... ..+ ...++
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~-----~V~l----~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 72 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGY-----DVLL----NDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARI 72 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3579999995 9999999999998774 3555 456656555322222111 000 01235
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vI 219 (405)
+++. +++++++||+||.+. |. +.++...+.+.+.++++++++++
T Consensus 73 ~~~~-~~~~~~~aD~Vieav--pe------------~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 73 STAT-DLEDLADCDLVIEAA--TE------------DETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred EeeC-CHHHhcCCCEEEEcC--cC------------CHHHHHHHHHHHHhhCCCCcEEE
Confidence 5544 467899999999873 21 12344455556777775677664
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=5e-05 Score=75.04 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=62.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc---C------CCcceEEEec
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---F------PLLREVKIGI 164 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~---~------~~~~~v~i~~ 164 (405)
.+++||+|||+ |.+|..++..|+..+. ++.+ +|++.+.++.....+.... . ....+++.++
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGL-----QVVL----IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEA 71 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeC
Confidence 45679999995 9999999999998764 3544 4555555543332221110 0 0112345555
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+..+++++||+||++... ...+..++...+..+++++++|+..++
T Consensus 72 ~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~ii~s~ts 116 (311)
T PRK06130 72 GLAAAVSGADLVIEAVPE--------------KLELKRDVFARLDGLCDPDTIFATNTS 116 (311)
T ss_pred CHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 555679999999987321 123444555556666645555543333
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.8e-05 Score=74.02 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh-------h---c-C------CCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED-------S---L-F------PLLR 158 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d-------~---~-~------~~~~ 158 (405)
..||+|||| |.+|..++..|+..|. +|.+ +|++++.++.....+.+ . . . ....
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~-----~V~l----~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGY-----DVTI----VDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 469999995 9999999999998875 3554 45565555422111111 0 0 0 0012
Q ss_pred eEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++..++ +++++++||+||.+... +.++.+++.+.+.++++++++++..|.
T Consensus 73 ~i~~~~-~~~~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il~S~ts 122 (291)
T PRK06035 73 RIRTST-SYESLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETIIASNTS 122 (291)
T ss_pred CcEeeC-CHHHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 344444 44789999999987421 245566677778888766776654443
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=97.98 E-value=2e-05 Score=63.90 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=63.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEWA 176 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADiV 176 (405)
||+||| +|++|++++..|+..+. .. .++.+. .++++++++..+.++. +.+.. +..+++++||+|
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~-~~-~~v~~~---~~r~~~~~~~~~~~~~---------~~~~~~~~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGI-KP-HEVIIV---SSRSPEKAAELAKEYG---------VQATADDNEEAAQEADVV 65 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS--G-GEEEEE---EESSHHHHHHHHHHCT---------TEEESEEHHHHHHHTSEE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCC-Cc-eeEEee---ccCcHHHHHHHHHhhc---------cccccCChHHhhccCCEE
Confidence 899999 59999999999999886 22 234431 3777777765554432 12233 578899999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
|++... +.+.++++.+... .++..+|-++||
T Consensus 66 ilav~p----------------~~~~~v~~~i~~~-~~~~~vis~~ag 96 (96)
T PF03807_consen 66 ILAVKP----------------QQLPEVLSEIPHL-LKGKLVISIAAG 96 (96)
T ss_dssp EE-S-G----------------GGHHHHHHHHHHH-HTTSEEEEESTT
T ss_pred EEEECH----------------HHHHHHHHHHhhc-cCCCEEEEeCCC
Confidence 997421 3455566666333 367888888876
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.2e-05 Score=74.43 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=59.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHH-------HHhhhhc-C------CCcce
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-------MELEDSL-F------PLLRE 159 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a-------~DL~d~~-~------~~~~~ 159 (405)
.++.||+|||+ |.+|..+|..|+..|. ++.+ +|++.+.++... .++.+.. . .....
T Consensus 2 ~~~~~V~vIG~-G~mG~~iA~~l~~~G~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 71 (295)
T PLN02545 2 AEIKKVGVVGA-GQMGSGIAQLAAAAGM-----DVWL----LDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGR 71 (295)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 45679999995 9999999999998774 3554 455555543211 1111110 0 00012
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 015501 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (405)
Q Consensus 160 v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vI 219 (405)
.+.+ ++++++++||+||.+.. . +.++...+...+.++++++++|+
T Consensus 72 ~~~~-~~~~~~~~aD~Vieav~--e------------~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 72 IRCT-TNLEELRDADFIIEAIV--E------------SEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred eEee-CCHHHhCCCCEEEEcCc--c------------CHHHHHHHHHHHHhhCCCCcEEE
Confidence 3333 45688999999998732 1 23445555555666665676553
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.4e-05 Score=83.21 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH---HHHHhhhh-c----C------CCcceE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDS-L----F------PLLREV 160 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g---~a~DL~d~-~----~------~~~~~v 160 (405)
+..||+|||| |.+|..+|..++..|+ ++.| +|.+.+.++. .+.++.+. . . ....++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 381 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT-----PIVM----KDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGI 381 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCe
Confidence 4579999995 9999999999999876 4665 4555444431 11111111 0 0 012356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP 240 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~ 240 (405)
+.++ +++++++||+||-+. .++.++-+++-..+.++|+|++++ .||-..+-...+.... ..|
T Consensus 382 ~~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~ia~~~-~~p 443 (714)
T TIGR02437 382 TPTL-SYAGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLLAKAL-KRP 443 (714)
T ss_pred EEeC-CHHHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHhhc-CCc
Confidence 6654 568899999999873 235788888999999999788776 8887653332232333 244
Q ss_pred CCceee
Q 015501 241 AKNFHA 246 (405)
Q Consensus 241 ~k~ig~ 246 (405)
.|++|+
T Consensus 444 ~r~ig~ 449 (714)
T TIGR02437 444 ENFCGM 449 (714)
T ss_pred ccEEEE
Confidence 455554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.7e-05 Score=82.58 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH---HHH-hhhhc----C------CCcceEE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AME-LEDSL----F------PLLREVK 161 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~---a~D-L~d~~----~------~~~~~v~ 161 (405)
..||+|||| |.+|..+|..++..|+ ++.| +|.+++.++.- +.+ +.... . ....+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV-----PVIM----KDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 478999995 9999999999999876 4665 45555544321 111 11100 0 0113566
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC
Q 015501 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~ 241 (405)
.++ +++++++||+||-+. .++.++-+++-..+.++|+|++++ .||-..+-...+.+.. ..|.
T Consensus 383 ~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la~~~-~~p~ 444 (715)
T PRK11730 383 PTL-DYAGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTISISLLAKAL-KRPE 444 (715)
T ss_pred EeC-CHHHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHhhc-CCCc
Confidence 654 568999999999763 235788888999999999777766 8887653322232333 3455
Q ss_pred Cceee
Q 015501 242 KNFHA 246 (405)
Q Consensus 242 k~ig~ 246 (405)
|++|+
T Consensus 445 r~~g~ 449 (715)
T PRK11730 445 NFCGM 449 (715)
T ss_pred cEEEE
Confidence 66653
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.4e-05 Score=82.52 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHH----hhhhc----C------CCcce
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSL----F------PLLRE 159 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D----L~d~~----~------~~~~~ 159 (405)
+..||+|||| |.+|+.+|..++. .|+ ++.| +|.+++.++.-... |.... . ....+
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~-----~V~l----~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 372 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI-----PVRI----KDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMAL 372 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 3479999995 9999999999884 565 3555 34444443321111 11110 0 01235
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCC
Q 015501 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI 239 (405)
Q Consensus 160 v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~ 239 (405)
++.++ ++++++|||+||-+. .++.++-+++-..+.++|+|++++ .||-...-...+.... ..
T Consensus 373 i~~~~-~~~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la~~~-~~ 434 (699)
T TIGR02440 373 ITGTT-DYRGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIAAAA-SR 434 (699)
T ss_pred eEEeC-ChHHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHHHhc-CC
Confidence 66654 568999999999873 235788888999999999777766 7886653332232333 34
Q ss_pred CCCceee
Q 015501 240 PAKNFHA 246 (405)
Q Consensus 240 ~~k~ig~ 246 (405)
|.|++|+
T Consensus 435 p~r~~g~ 441 (699)
T TIGR02440 435 PENVIGL 441 (699)
T ss_pred cccEEEE
Confidence 4555553
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=72.03 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh----hc----C------CCcceEEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL----F------PLLREVKI 162 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d----~~----~------~~~~~v~i 162 (405)
.||+|||+ |.+|..+|..|+..+. ++.+ +|++++.++.....+.. .. . ....+++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF-----QTTL----VDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC-----cEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 58999995 9999999999998764 3554 45555555433211111 00 0 01123566
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEE
Q 015501 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 163 ~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~v 218 (405)
+.+..+++++||+||.+.. . +..+...+...+.+++.+++++
T Consensus 72 ~~~~~~~~~~aD~Vi~avp--e------------~~~~k~~~~~~l~~~~~~~~il 113 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVP--E------------KLELKKAVFETADAHAPAECYI 113 (288)
T ss_pred eCcHHHhhcCCCEEEEecc--C------------CHHHHHHHHHHHHhhCCCCcEE
Confidence 6666689999999998732 1 1334444555567776566655
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.2e-05 Score=83.03 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH---HHHhhhhc-----C------CCcceE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDSL-----F------PLLREV 160 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~---a~DL~d~~-----~------~~~~~v 160 (405)
+..||+|||| |.+|..+|..++..|+ ++.| +|.+++.++.- ..+..+.. . ....++
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~-----~V~l----~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 403 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDKGL-----KTVL----KDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL 403 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhCCC-----cEEE----ecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3478999995 9999999999999876 4665 45555544421 11111110 0 011356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP 240 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~ 240 (405)
+.++ +++++++||+||-+. .+|.++-+++-..+.++|+|++++ .||...+-...+.... ..|
T Consensus 404 ~~~~-~~~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la~~~-~~p 465 (737)
T TIGR02441 404 TPTL-DYSGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIAAVS-SRP 465 (737)
T ss_pred EEeC-CHHHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHhhc-CCc
Confidence 6554 578999999999762 346788889999999999778776 7886653332232333 234
Q ss_pred CCcee
Q 015501 241 AKNFH 245 (405)
Q Consensus 241 ~k~ig 245 (405)
.|++|
T Consensus 466 ~r~ig 470 (737)
T TIGR02441 466 EKVIG 470 (737)
T ss_pred cceEE
Confidence 45555
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.8e-05 Score=81.98 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcccCCCCCceEEEeccccchhhhHHH---HHHHhhhhc------C-----CCcceE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSL------F-----PLLREV 160 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~-~~~~~~~d~~i~L~l~~~d~~~~~l~g---~a~DL~d~~------~-----~~~~~v 160 (405)
..||+|||| |.+|..+|..++ ..|+ ++.| +|.+.+.++. .+.+..+.. . ....++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~-----~V~l----~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 378 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL-----PVRI----KDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALI 378 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcE
Confidence 579999995 999999999998 6565 4655 3444443332 111111110 0 112356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP 240 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~ 240 (405)
+.++ ++++++|||+||-+. .+|.++-+++-..+.++++|++++ .||-..+-...+.... ..|
T Consensus 379 ~~~~-~~~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la~~~-~~p 440 (708)
T PRK11154 379 SGTT-DYRGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIAAAA-ARP 440 (708)
T ss_pred EEeC-ChHHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhc-Ccc
Confidence 6665 468999999999763 346788899999999999888877 7886653333232333 234
Q ss_pred CCceee
Q 015501 241 AKNFHA 246 (405)
Q Consensus 241 ~k~ig~ 246 (405)
.|++|+
T Consensus 441 ~r~ig~ 446 (708)
T PRK11154 441 EQVIGL 446 (708)
T ss_pred cceEEE
Confidence 455554
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.9e-05 Score=78.86 Aligned_cols=101 Identities=14% Similarity=0.070 Sum_probs=63.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH---HHHhhhhcC--C---------Ccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDSLF--P---------LLR 158 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~---a~DL~d~~~--~---------~~~ 158 (405)
..+..||+|||| |.+|..+|..++..|+ ++.+ .|++.+.++.. +.++.+... . ...
T Consensus 4 ~~~i~~V~VIGa-G~MG~gIA~~la~aG~-----~V~l----~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~ 73 (507)
T PRK08268 4 LPSIATVAVIGA-GAMGAGIAQVAAQAGH-----TVLL----YDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALA 73 (507)
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 345689999995 9999999999998875 3555 45665655432 111111100 0 112
Q ss_pred eEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEE
Q 015501 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~v 218 (405)
+++.++ +++++++||+||.+.. ++.++-+.+-..+.+++++++++
T Consensus 74 ~i~~~~-~~~~~~~aDlViEav~--------------E~~~vK~~vf~~l~~~~~~~ail 118 (507)
T PRK08268 74 RLRPVE-ALADLADCDLVVEAIV--------------ERLDVKQALFAQLEAIVSPDCIL 118 (507)
T ss_pred CeEEeC-CHHHhCCCCEEEEcCc--------------ccHHHHHHHHHHHHhhCCCCcEE
Confidence 356554 5678999999998732 23455555556688887667666
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0005 Score=69.62 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=71.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH--------HhhhhcC--CCcceEEEecCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLF--PLLREVKIGINP 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~--------DL~d~~~--~~~~~v~i~~~~ 166 (405)
|||+||| +|.||...+-.|++.|. ++.. +|+++++.+..-. .|++... ...++.+.|++.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-----eVv~----vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~ 70 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-----EVVC----VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDY 70 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCH
Confidence 7999999 69999999999998764 3433 3444455442210 1111110 111348888888
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCC-eEEEE-eCCchhHHH
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN-VKVIV-VGNPCNTNA 229 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~-a~vIv-vtNP~d~~t 229 (405)
.++++++|+++++.|-|.++..+ .+...+...++.|.++- +. .+|++ -|=|+.+..
T Consensus 71 ~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~-~~~~vvV~KSTVPvGt~~ 128 (414)
T COG1004 71 EEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEIL-DGKAVVVIKSTVPVGTTE 128 (414)
T ss_pred HHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhc-CCCeEEEEcCCCCCCchH
Confidence 88999999999998877665221 22466666666666664 43 33332 233654433
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=67.50 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=66.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC--------------cceEEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~--------------~~~v~i 162 (405)
|||+||| .|.||..+|..|+..|. .+.- +|.+.++.+... +...++ ..+.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-----~V~g----~D~~~~~v~~l~----~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-----QVIG----VDIDEEKVEALN----NGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-----EEEE----E-S-HHHHHHHH----TTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-----EEEE----EeCChHHHHHHh----hccccccccchhhhhccccccccchh
Confidence 7999999 69999999999999885 2322 466656554332 221110 136788
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-chhHHH----HHHHHHC
Q 015501 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PCNTNA----LICLKNA 236 (405)
Q Consensus 163 ~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-P~d~~t----~~~~k~s 236 (405)
+++..+++++||++|++.+.|..++.+ . +..-+.+.++.|.++..++..|++=|. |..+.- .++.+..
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~-~-----Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGS-P-----DLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTS-B-----ETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhccceEEEecCCCccccCC-c-----cHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 877788899999999997766544221 1 124445555555555545556555553 654443 4455544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=76.70 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=66.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH----hhhhcC-C---------Ccce
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSLF-P---------LLRE 159 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D----L~d~~~-~---------~~~~ 159 (405)
.+..||+|||+ |.+|+.+|..++..|+ ++.+ +|++++.++..... +..... . ...+
T Consensus 3 ~~~~kV~VIGa-G~MG~gIA~~la~aG~-----~V~l----~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 72 (503)
T TIGR02279 3 INVVTVAVIGA-GAMGAGIAQVAASAGH-----QVLL----YDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKR 72 (503)
T ss_pred CCccEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhc
Confidence 34679999995 9999999999998875 3555 46666665432111 111100 0 1124
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 160 v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++.++ +++++++||+||.+.. ++.++-+.+-..+.+++++++++ .||-..
T Consensus 73 i~~~~-~~~~l~~aDlVIEav~--------------E~~~vK~~vf~~l~~~~~~~~Il--asnTSt 122 (503)
T TIGR02279 73 LIPVT-DLHALADAGLVIEAIV--------------ENLEVKKALFAQLEELCPADTII--ASNTSS 122 (503)
T ss_pred cEEeC-CHHHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCC
Confidence 55554 4678999999998732 23455555566688888566654 666543
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00025 Score=74.86 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh----------hhcCCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE----------DSLFPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~----------d~~~~~~~~v~i~~~ 165 (405)
.+||+|||+ |.+|+.+|..|+..|. ++.+ .|+++++++.....+. ........++++..+
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~-----~V~v----~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI-----DVAV----FDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 468999994 9999999999998875 3554 4556555543221110 000001123566666
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
..+++++||+|+.+.. . +.++.+.+...+.++++++++ +.+|-..
T Consensus 74 ~~ea~~~aD~Vieavp--e------------~~~vk~~l~~~l~~~~~~~~i--I~SsTsg 118 (495)
T PRK07531 74 LAEAVAGADWIQESVP--E------------RLDLKRRVLAEIDAAARPDAL--IGSSTSG 118 (495)
T ss_pred HHHHhcCCCEEEEcCc--C------------CHHHHHHHHHHHHhhCCCCcE--EEEcCCC
Confidence 6688999999998632 1 234444455556677645543 4555544
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00038 Score=69.97 Aligned_cols=117 Identities=14% Similarity=-0.003 Sum_probs=73.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-----CCCcceEEEecCcc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-----FPLLREVKIGINPY 167 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-----~~~~~~v~i~~~~~ 167 (405)
.++++||+|||| |.+|..++..|...+. +.+. .++++..+....+-.... ..+..++..+++..
T Consensus 4 ~~~~mkI~IiGa-Ga~G~alA~~La~~g~------v~l~----~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~ 72 (341)
T PRK12439 4 AKREPKVVVLGG-GSWGTTVASICARRGP------TLQW----VRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFA 72 (341)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHHCCC------EEEE----eCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHH
Confidence 366899999995 9999999999998752 3332 233343332222110000 01112456666767
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH-----HHHHHHHHC
Q 015501 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-----NALICLKNA 236 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~-----~t~~~~k~s 236 (405)
++++++|+||++.. ...++++.+.+..+.+++..+|.++|-.+. +..++.+..
T Consensus 73 ~a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l 130 (341)
T PRK12439 73 EAANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVL 130 (341)
T ss_pred HHHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHc
Confidence 88999999998732 245666666666665567788899997653 445555543
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00029 Score=69.65 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc----CCCcceEEEecCcccccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~eal~ 171 (405)
||||+|||+ |.+|+.++..|+..+. ++.+ ++++++.++....+-.+.. ......+....+..+.++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH-----DVTL----WARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 579999995 9999999999998764 3544 4555555554433211100 001113445555556888
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++|+||++... ..+.++.+.+..+..++.++|..+|-.+
T Consensus 71 ~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 DADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 99999987331 2234444455555446778888877543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00016 Score=64.92 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+||| .|.+|+.++..|+..+. ++.. +|++.++++....+ ..+...+..|.+++||+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-----~v~~----~d~~~~~~~~~~~~----------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-----EVTV----YDRSPEKAEALAEA----------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-----EEEE----EESSHHHHHHHHHT----------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-----eEEe----eccchhhhhhhHHh----------hhhhhhhhhhHhhcccc
Confidence 78999999 69999999999998775 3444 56766666544321 14555677889999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHH--HHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKA--LNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~--i~~~a~p~a~vIvvtN 223 (405)
||++-. +.+.++++... +.....++.++|..++
T Consensus 61 vi~~v~---------------~~~~v~~v~~~~~i~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 61 VILCVP---------------DDDAVEAVLFGENILAGLRPGKIIIDMST 95 (163)
T ss_dssp EEE-SS---------------SHHHHHHHHHCTTHGGGS-TTEEEEE-SS
T ss_pred eEeecc---------------cchhhhhhhhhhHHhhccccceEEEecCC
Confidence 998632 23445555554 4444334555555543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0005 Score=66.76 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=64.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||+ |.+|..++..|...+.+.. ..+.+ ++++.++++....++ + .+.+..+..+.+.++|+|
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~-~~v~v----~~r~~~~~~~~~~~~-----~---g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKP-SQLTI----TNRTPAKAYHIKERY-----P---GIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE----ECCCHHHHHHHHHHc-----C---CeEEECCHHHHHHhCCEE
Confidence 48999995 9999999999998875322 23444 566656554332211 1 234555666778999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|++.. -..+.++.+.+..+..++.+||.++|.+.
T Consensus 67 ilav~----------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICVK----------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 98742 12344455555544335678889999764
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00077 Score=66.72 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH-------HhhhhcC-------CCcceEE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDSLF-------PLLREVK 161 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~-------DL~d~~~-------~~~~~v~ 161 (405)
++||+||| +|.+|+.++..|+..|. +|.+ +|++.+.++.... .+.+... ....+++
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~-----~V~v----~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGH-----EVRL----WDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCC-----eeEE----EeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 46899999 59999999999999875 3554 4555444432111 1111100 0112356
Q ss_pred EecCcccccCCCcEEEEeC
Q 015501 162 IGINPYELFEDAEWALLIG 180 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~ 180 (405)
++.+..+++++||+|+.+.
T Consensus 72 ~~~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 72 VTDSLADAVADADYVQESA 90 (308)
T ss_pred EECcHHHhhCCCCEEEECC
Confidence 6666667899999999873
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.001 Score=66.18 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh--cCC------CcceEEEecCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFP------LLREVKIGINPY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~--~~~------~~~~v~i~~~~~ 167 (405)
++||+|+|| |.-|.++|..|+..+. ++.|.- ++++. +.|+.+. ... +..++..++|..
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~-----~V~lw~----r~~~~----~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~ 66 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH-----EVRLWG----RDEEI----VAEINETRENPKYLPGILLPPNLKATTDLA 66 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC-----eeEEEe----cCHHH----HHHHHhcCcCccccCCccCCcccccccCHH
Confidence 579999995 9999999999999873 466643 33232 2333322 111 224677788999
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-----chhHHHHHHHHHCC
Q 015501 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-----PCNTNALICLKNAP 237 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-----P~d~~t~~~~k~s~ 237 (405)
+++++||+||+. .| .+.++++++.++.+-.++.+++..+- ....+..++.+..|
T Consensus 67 ~a~~~ad~iv~a--vP--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~ 125 (329)
T COG0240 67 EALDGADIIVIA--VP--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELP 125 (329)
T ss_pred HHHhcCCEEEEE--CC--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcC
Confidence 999999999987 33 46777788777655556788888773 45677777777654
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00093 Score=66.48 Aligned_cols=104 Identities=14% Similarity=0.249 Sum_probs=64.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc----CCCcceEEEecCccccc-C
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELF-E 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~eal-~ 171 (405)
|||+|||| |.+|+.++..|...+. +|.| ++++.+.++....+-.+.. ..+..++.++.+..+++ .
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~-----~V~l----~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI-----SVNL----WGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEE----EecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 58999995 9999999999998763 3555 4555554443332211111 01113466666666666 5
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHh-hcCCCeEEEEeCCchh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA-VASRNVKVIVVGNPCN 226 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~-~a~p~a~vIvvtNP~d 226 (405)
++|+||++.. ..-+.++.+.+.. +.+++..|+..+|=.+
T Consensus 71 ~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 71 NATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred CCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 8999998732 2445555555654 4346777888888763
|
|
| >PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00033 Score=66.63 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=51.5
Q ss_pred hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 325 ~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+|...++ ..++++|. +|++.++.++|.++|..-++|+|.++++||+|+++|+.++.. .+|.+.....++.
T Consensus 132 ~~~~~~~a---~~~i~~i~-----~~~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~ 202 (232)
T PF11975_consen 132 KRGSGEYA---EAAIEAIY-----NDKPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQ 202 (232)
T ss_dssp SSTTSCHH---HHHHHHHH-----HSSEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHH
T ss_pred cccccchH---HHHHHHHh-----cCCCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHH
Confidence 34444444 45555554 688999999999999989999999999999999999999764 7899988876653
|
It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00093 Score=71.29 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=67.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc---CC--CcceEEEe---cC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---FP--LLREVKIG---IN 165 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~---~~--~~~~v~i~---~~ 165 (405)
++.+.|.|+||+|.+|.+++..|+..|. .|.+ .+++.+++.....++.+.. .. ...++.+. ..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-----~Vva----l~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-----RVRA----GVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 3456899999999999999999998764 2443 3455555554443332210 00 00112111 11
Q ss_pred ----cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 ----PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ----~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..+++.++|+||.++|.......+-...+..|......+.+.+.+. .-+.||+++
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a--gVgRIV~VS 207 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA--KVNHFILVT 207 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh--CCCEEEEEc
Confidence 2346789999998876543221121223455666777777777764 234566665
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0014 Score=63.93 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=46.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||+||| +|++|.+++..|+..+.+.. ..|.. +|++.++++....++ . +.+..+..+.+++||+|
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~-~~I~v----~~r~~~~~~~l~~~~-----g----~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSP-DQIIC----SDLNVSNLKNASDKY-----G----ITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCC-ceEEE----ECCCHHHHHHHHHhc-----C----cEEeCCcHHHHhhCCEE
Confidence 5899999 59999999999998876432 13443 566666654332211 1 23445666778999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 68 iLav 71 (272)
T PRK12491 68 ILSI 71 (272)
T ss_pred EEEe
Confidence 9873
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00054 Score=59.30 Aligned_cols=104 Identities=20% Similarity=0.188 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..+||+|||| |.||.+|+..|...+. +|.- + ..++.+..+..+..+. ...+ .+..+.+.+||
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~-----~v~~-v--~srs~~sa~~a~~~~~--------~~~~-~~~~~~~~~aD 70 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH-----EVVG-V--YSRSPASAERAAAFIG--------AGAI-LDLEEILRDAD 70 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS-----EEEE-E--SSCHH-HHHHHHC--T--------T------TTGGGCC-S
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC-----eEEE-E--EeCCcccccccccccc--------cccc-cccccccccCC
Confidence 3589999995 9999999999998775 2322 2 3455444332222111 1222 34678899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc-CCCeEEEEeC---CchhHHHHHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVG---NPCNTNALIC 232 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a-~p~a~vIvvt---NP~d~~t~~~ 232 (405)
++|++..+ ..+.++++.|..+. ...+.+++-+ -+.+++..+-
T Consensus 71 lv~iavpD----------------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~ 116 (127)
T PF10727_consen 71 LVFIAVPD----------------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPAR 116 (127)
T ss_dssp EEEE-S-C----------------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHH
T ss_pred EEEEEech----------------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHH
Confidence 99998432 35677777777751 0234555554 3556665543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0051 Score=63.09 Aligned_cols=115 Identities=10% Similarity=0.130 Sum_probs=62.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--------CcceEEEecCccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--------LLREVKIGINPYE 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--------~~~~v~i~~~~~e 168 (405)
|||+||| +|.||..+|..++. |. ++.. +|+++++++...........+ ....++.+.+..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-----~Vig----vD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-----EVVA----LDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-----cEEE----EECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 5899999 59999999977775 42 2544 466666655333211100000 1123445555678
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHH
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTN 228 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~ 228 (405)
+.++||+||++...|....... -+..-+.+.++.+.+. .++..||+-| =|..+.
T Consensus 70 ~~~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt 124 (388)
T PRK15057 70 AYRDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFT 124 (388)
T ss_pred hhcCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhc-CCCCEEEEeeecCCchH
Confidence 8899999999855442111111 1223444444545443 3555555444 455443
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00024 Score=66.71 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=74.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH----HHHHHhhhhcC------C-------
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDSLF------P------- 155 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~----g~a~DL~d~~~------~------- 155 (405)
+.++..|+|||| |.+|+.+|+-.++.|+ .+.| .|.+++.|. ++...+.+.+. +
T Consensus 8 ~~~~~~V~ivGa-G~MGSGIAQv~a~sg~-----~V~l----~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v 77 (298)
T KOG2304|consen 8 MAEIKNVAIVGA-GQMGSGIAQVAATSGL-----NVWL----VDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFV 77 (298)
T ss_pred cccccceEEEcc-cccchhHHHHHHhcCC-----ceEE----ecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHH
Confidence 455789999995 9999999999998876 3555 344444433 22222222110 0
Q ss_pred --CcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 156 --LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 156 --~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
.+..+...++...++.|||+||-+ ..+|+.|-+++-+.+.+.|.+++++ .||....
T Consensus 78 ~~~l~ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSSl 135 (298)
T KOG2304|consen 78 DDTLDRIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSSL 135 (298)
T ss_pred HHHHHHHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccce
Confidence 112345567777888889988743 3678999999999999999667766 7887643
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0015 Score=67.31 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC---------C-cceEEEecCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---------L-LREVKIGINP 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~---------~-~~~v~i~~~~ 166 (405)
|||+||| .|.||..++..|+..|. ++.. +|++.++.+...........+ . ..+++.+++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-----~V~~----~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-----EVTG----VDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-----eEEE----EECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 5899999 59999999999998764 2443 456555554332110000000 0 1235566666
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+++++||+||++...|..... . -+...+.+..+.+.++..++.+|++.|
T Consensus 71 ~~~~~~advvii~vpt~~~~~~-~-----~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDG-S-----PDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCC-C-----cChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 6789999999998665543211 1 122334444444544433445555444
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0015 Score=65.84 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=71.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCC---CceEEEeccccc-hhhhHHHHHHHhhhhcC----CCcceEEEecCcccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPD---QPIALKLLGSER-SLQALEGVAMELEDSLF----PLLREVKIGINPYEL 169 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d---~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~----~~~~~v~i~~~~~ea 169 (405)
||+|||| |..|.++|..|...+...++ .+|.|+-.+-++ +.+..+..-.+.+...+ .+..+++++++..++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 7999995 99999999999987733221 356664321111 22222211111111110 122357788887889
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-------chhHHHHHHHHHC
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-------PCNTNALICLKNA 236 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-------P~d~~t~~~~k~s 236 (405)
+++||+||++ .| .+.++++++.+..+-.++..+|.++- ..-.+..++.+..
T Consensus 80 l~~ADiIIlA--VP--------------s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 80 AKGADILVFV--IP--------------HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred HhcCCEEEEE--CC--------------hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence 9999999987 33 36677777777766444556666652 2234555555443
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0022 Score=65.21 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=67.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc----CCCCCceEEEeccccchhhhHHHHHHHhhhh--cC------CCcceEE
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSERSLQALEGVAMELEDS--LF------PLLREVK 161 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~----~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~--~~------~~~~~v~ 161 (405)
.+.+||+|||| |.-|+++|..|...+. |+. ++.|+..+-+.+.+ ..+.++.+. .. .+..++.
T Consensus 9 ~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~--~V~lw~~~~~~~~~---~~~~~in~~~~N~~ylp~~~Lp~ni~ 82 (365)
T PTZ00345 9 CGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHN--EVRMWVLEEIVEGE---KLSDIINTKHENVKYLPGIKLPDNIV 82 (365)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEecccccch---HHHHHHHhcCCCcccCCCCcCCCceE
Confidence 45689999995 9999999999998762 332 46664432211111 123334321 11 1334678
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHh--hcCCCeEEEEeC
Q 015501 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA--VASRNVKVIVVG 222 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~--~a~p~a~vIvvt 222 (405)
.+++..+++++||+||++ .| .+.++++++.++. +-.++..+|.++
T Consensus 83 ~tsdl~eav~~aDiIvlA--VP--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 83 AVSDLKEAVEDADLLIFV--IP--------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred EecCHHHHHhcCCEEEEE--cC--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 888888899999999887 33 3667777777776 433344565554
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0029 Score=65.83 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=57.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||||.|.+|..++..|...+. .+.+ ++++.+.+...+.++ .+....+..+++.+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-----~V~v----~~r~~~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-----EVIV----TGRDPKKGKEVAKEL---------GVEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-----EEEE----EECChHHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence 5899998679999999999998764 2443 455545443333321 122334566788999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++... ..+.++.+.+..+..++++|+.++.
T Consensus 63 Ilavp~----------------~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 63 IISVPI----------------NVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEecCH----------------HHHHHHHHHHHhhCCCCCEEEEccc
Confidence 987431 2223333444443346667777765
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=64.67 Aligned_cols=76 Identities=26% Similarity=0.306 Sum_probs=49.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc----CCCcceEEEecCcccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYEL 169 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~ea 169 (405)
..+|||+|||+ |.+|..++..|+..+. ++.+ ++++.++++.....-.+.. .....++..+.+..++
T Consensus 2 ~~~m~I~iIG~-G~mG~~ia~~L~~~G~-----~V~~----~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~ 71 (328)
T PRK14618 2 HHGMRVAVLGA-GAWGTALAVLAASKGV-----PVRL----WARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA 71 (328)
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH
Confidence 34789999995 9999999999998764 3554 4555555544332111100 0111225555666678
Q ss_pred cCCCcEEEEe
Q 015501 170 FEDAEWALLI 179 (405)
Q Consensus 170 l~dADiVIi~ 179 (405)
++++|+||++
T Consensus 72 ~~~aD~Vi~~ 81 (328)
T PRK14618 72 LAGADFAVVA 81 (328)
T ss_pred HcCCCEEEEE
Confidence 8999999987
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=68.47 Aligned_cols=123 Identities=13% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH--------hhhhcCC-CcceEEEecCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP-LLREVKIGINP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D--------L~d~~~~-~~~~v~i~~~~ 166 (405)
||||+||| +|.||..+|..|+..|. + ..+.. +|.++++++..-.. +++.... ..+..+++++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~-g--~~V~g----vD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCP-D--IEVVV----VDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-C--CeEEE----EECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 68999999 59999999999998652 1 12332 45555655543211 1111000 11246777777
Q ss_pred ccccCCCcEEEEeCCcCCCCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe-CCchhHH
Q 015501 167 YELFEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNTN 228 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~-~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv-tNP~d~~ 228 (405)
.+++++||++|++.+.|..... .. + -.-+..-+.+.++.|.++.+++.+||+= |-|..+.
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt 134 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH
Confidence 7899999999999877754311 00 0 0112345666666677665333333322 4566543
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0019 Score=62.18 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccc-cchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~-d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|||+||| .|.+|..++..|+..+.... ..|.+ . +++.++++.. .+. .+.+..+..+.+++||+
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~-~~i~v----~~~r~~~~~~~~----~~~------g~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPP-SRIST----ADDSNPARRDVF----QSL------GVKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCc-ceEEE----EeCCCHHHHHHH----HHc------CCEEeCChHHHHhcCCE
Confidence 6899999 59999999999998875332 12333 3 5655554322 111 13344566677889999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
||++.. | +.+.++.+.+..+..++..||..++..
T Consensus 65 Vil~v~-~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 65 IILAVK-P---------------QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred EEEEEC-c---------------HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 998742 2 234444445544433566666665554
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=63.68 Aligned_cols=97 Identities=25% Similarity=0.317 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||++||+ |++|..++..|+..+.+.. ..|.+ .+++.+++...+.++ +. . .+.+..++..++|+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~-~~I~v----~~~~~e~~~~l~~~~-----g~--~--~~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPP-EEIIV----TNRSEEKRAALAAEY-----GV--V--TTTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCc-ceEEE----eCCCHHHHHHHHHHc-----CC--c--ccCcHHHHHhhCCE
Confidence 579999995 9999999999999985443 23544 677777665333322 22 1 25566788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
||++. || +.+.++...++.. .++-.||-+.=.
T Consensus 66 v~Lav----KP------------q~~~~vl~~l~~~-~~~~lvISiaAG 97 (266)
T COG0345 66 VFLAV----KP------------QDLEEVLSKLKPL-TKDKLVISIAAG 97 (266)
T ss_pred EEEEe----Ch------------HhHHHHHHHhhcc-cCCCEEEEEeCC
Confidence 99874 23 4566666666652 245455554433
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0021 Score=61.93 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|||+ |.+|..++..|...+... ..+.+ ++++.++++....++ .+.+..+..+.+.++|+
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~--~~v~v----~~r~~~~~~~~~~~~---------g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPA--KDIIV----SDPSPEKRAALAEEY---------GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCc--ceEEE----EcCCHHHHHHHHHhc---------CCeecCChHHHHhcCCE
Confidence 579999995 999999999999876311 12433 566655554332211 12334455667889999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
||++.. ...+.++.+.+..+. +..|+.++|-.
T Consensus 66 Vil~v~----------------~~~~~~v~~~l~~~~--~~~vvs~~~gi 97 (267)
T PRK11880 66 VVLAVK----------------PQVMEEVLSELKGQL--DKLVVSIAAGV 97 (267)
T ss_pred EEEEcC----------------HHHHHHHHHHHHhhc--CCEEEEecCCC
Confidence 998742 134555665555543 44677777754
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0036 Score=59.45 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+.+||+|||+ |.+|..++..|+..+.... ..+.+ .++ +.++++..+..+ .+..+.+..+.++++
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~-~~i~~----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 67 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYI-EEIIV----SNRSNVEKLDQLQARY---------NVSTTTDWKQHVTSV 67 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCc-CeEEE----ECCCCHHHHHHHHHHc---------CcEEeCChHHHHhcC
Confidence 4579999995 9999999999987653211 11322 233 344544333211 133445666788999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|+||++.. -+.++++.+.+..+- ++..||.++.-.+
T Consensus 68 DiViiavp----------------~~~~~~v~~~l~~~~-~~~~vis~~~gi~ 103 (245)
T PRK07634 68 DTIVLAMP----------------PSAHEELLAELSPLL-SNQLVVTVAAGIG 103 (245)
T ss_pred CEEEEecC----------------HHHHHHHHHHHHhhc-cCCEEEEECCCCC
Confidence 99998732 123344455555432 3345666655443
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0018 Score=63.44 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cc--eEEEecCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LR--EVKIGINPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~--~v~i~~~~~eal~dA 173 (405)
|||+|+|+ |.+|..++..|...+. .+.+ +++ .++++....+=....... .. .....++..+..+++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~-----~V~~----~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR-----DVTF----LVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPF 69 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC-----ceEE----Eec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCC
Confidence 58999995 9999999999998763 3555 344 344443221000000000 00 111223333455899
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
|+||++... .-+.++.+.+..+.+++..||.+.|..+...
T Consensus 70 d~vilavk~----------------~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~ 109 (305)
T PRK12921 70 DLVILAVKA----------------YQLDAAIPDLKPLVGEDTVIIPLQNGIGQLE 109 (305)
T ss_pred CEEEEEecc----------------cCHHHHHHHHHhhcCCCCEEEEeeCCCChHH
Confidence 999987431 1123344445554346778888999886544
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0029 Score=62.96 Aligned_cols=123 Identities=12% Similarity=0.034 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc----ceEEEecCccccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL----REVKIGINPYELF 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~----~~v~i~~~~~eal 170 (405)
..++|+|+||+|+||++++..|+++|+- |.- .+ .|...++-..+..+|.... ..+ .++.-.....+++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-----V~g-tV-R~~~~~k~~~~L~~l~~a~-~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-----VRG-TV-RDPEDEKKTEHLRKLEGAK-ERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE-----EEE-EE-cCcchhhhHHHHHhcccCc-ccceEEeccccccchHHHHH
Confidence 4689999999999999999999999972 311 11 1222122222455555332 111 1222223345799
Q ss_pred CCCcEEEEeCCcCCCCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 171 EDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~-~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
++||.|+.+|....-... .-.++++-+++-...+.+.+.+. +..+=+|+|.-+..
T Consensus 77 ~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~--~sVkrvV~TSS~aA 132 (327)
T KOG1502|consen 77 DGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKT--KSVKRVVYTSSTAA 132 (327)
T ss_pred hCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhcc--CCcceEEEeccHHH
Confidence 999999998753211111 13357777888888999999986 36666667765543
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0037 Score=60.94 Aligned_cols=98 Identities=28% Similarity=0.255 Sum_probs=58.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh-hhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~-~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|||+||| +|.+|.+++..|+..+.... ..+.+ ++++. ++++..+.++ .+.+..+..+.+++||+
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~-~~v~v----~~r~~~~~~~~l~~~~---------g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKG-EQITV----SNRSNETRLQELHQKY---------GVKGTHNKKELLTDANI 68 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCc-ceEEE----ECCCCHHHHHHHHHhc---------CceEeCCHHHHHhcCCE
Confidence 6999999 59999999999998874322 23433 45543 3344333211 13344556677899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
||++.. | +.+.++.+.+..+..++.+||.+.+-+
T Consensus 69 Vilav~----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 69 LFLAMK----P------------KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred EEEEeC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 998732 1 223333344544433556676664544
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0021 Score=62.77 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEE--E-ecCcccccCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVK--I-GINPYELFED 172 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~--i-~~~~~eal~d 172 (405)
|||+|||| |.+|..++..|...|. ++.+ ++++.+.++....+ .. .. ..... + ..++.+.+++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH-----DVTL----VARRGAHLDALNEN---GL-RLEDGEITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECChHHHHHHHHc---CC-cccCCceeecccCCCChhHcCC
Confidence 58999995 9999999999998763 3555 34444444432211 10 00 11111 1 1233344589
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (405)
+|+||++... .-..++.+.+..+-+++..||...|..+..-.
T Consensus 67 ~d~vila~k~----------------~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 67 QDLVILAVKA----------------YQLPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred CCEEEEeccc----------------ccHHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 9999987431 11233344444443467788899998765443
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0041 Score=64.72 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=67.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC-cccccC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN-PYELFE 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~-~~eal~ 171 (405)
++.|||.|+||+|+||++++..|+..+. +|.. +|+...........+. .. .++.+. .+ ..+.+.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-----~V~~----ldr~~~~~~~~~~~~~----~~-~~~~~~~~Di~~~~~~ 183 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-----EVIV----IDNFFTGRKENLVHLF----GN-PRFELIRHDVVEPILL 183 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EeCCCCccHhHhhhhc----cC-CceEEEECcccccccc
Confidence 4568999999999999999999998764 2433 2221110010011111 00 112221 12 234577
Q ss_pred CCcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||.+++... ....+..+.+..|+.....+.+.+++.. ..+|.++.
T Consensus 184 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g---~r~V~~SS 234 (436)
T PLN02166 184 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---ARFLLTST 234 (436)
T ss_pred CCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC---CEEEEECc
Confidence 8999999876421 1122445677899999999999998862 36666654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0024 Score=62.29 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=42.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|..++..|...+. +|.+ +|++++.++.. .+. .. +.....+.+++++||+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-----~V~~----~d~~~~~~~~a-~~~--g~------~~~~~~~~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-----TVYG----VSRRESTCERA-IER--GL------VDEASTDLSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHH-HHC--CC------cccccCCHhHhcCCCEE
Confidence 5899999 59999999999998763 2444 45655554422 111 00 11123345678999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 62 ilav 65 (279)
T PRK07417 62 ILAL 65 (279)
T ss_pred EEcC
Confidence 9983
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0037 Score=61.05 Aligned_cols=100 Identities=21% Similarity=0.247 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
|+||+||| +|.+|..++..|...+.+.. ..+.+ ++++ .++++... ... ..+.++.+..+.++++|
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~-~~V~~----~~r~~~~~~~~l~----~~~----~~~~~~~~~~e~~~~aD 66 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATP-EEIIL----YSSSKNEHFNQLY----DKY----PTVELADNEAEIFTKCD 66 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCc-ccEEE----EeCCcHHHHHHHH----HHc----CCeEEeCCHHHHHhhCC
Confidence 57999999 59999999999998774321 23433 3332 22222221 111 12344456667789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+||++.. .+.+.++.+.+..+..++..||.+.|-+
T Consensus 67 vVilavp----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 67 HSFICVP----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred EEEEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 9998733 1334455555544332344566666644
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0037 Score=62.42 Aligned_cols=105 Identities=20% Similarity=0.112 Sum_probs=59.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-------CcceEEEecCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-------LLREVKIGINPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-------~~~~v~i~~~~~e 168 (405)
||||+||| +|.||..++..|...|. .+.+ ++++.. .+....+-...... ...++..+ .+.+
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~~G~-----~V~~----~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 69 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAAAGA-----DVTL----IGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFS-TDPA 69 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhcCC-----cEEE----EecHHH-HHHHHhcCceeecCCCcceecccceeEec-cChh
Confidence 47899999 59999999999998774 3554 344321 12111100000000 00122333 3457
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
+++++|+||++...+. ..++.+.+..+.+++.+|+..+|..+..
T Consensus 70 ~~~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 70 ALATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred hccCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 8899999999743211 1233344455444677888888987643
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0018 Score=65.67 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=70.2
Q ss_pred cceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc
Q 015501 74 CYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153 (405)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~ 153 (405)
.||.+++... +.++ -++.+.|||.|+||+|+||++++..|...|. +|.. +++..... +.+.
T Consensus 2 ~~~~~~~~~~-~~~~--~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-----~V~~----v~r~~~~~------~~~~- 62 (370)
T PLN02695 2 SYGAYTLAEL-EREP--YWPSEKLRICITGAGGFIASHIARRLKAEGH-----YIIA----SDWKKNEH------MSED- 62 (370)
T ss_pred Cccccchhhc-CCCC--CCCCCCCEEEEECCccHHHHHHHHHHHhCCC-----EEEE----EEeccccc------cccc-
Confidence 5676554322 2222 2555678999999999999999999998764 2332 23221110 0000
Q ss_pred CCCcceEE---Ee--cCcccccCCCcEEEEeCCcCCCCCC---chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 154 FPLLREVK---IG--INPYELFEDAEWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 154 ~~~~~~v~---i~--~~~~eal~dADiVIi~~g~~~k~g~---~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.....+. ++ ....+.++++|+||.+++.....+. +....+..|......+++.+++. +.+ .+|.++.
T Consensus 63 -~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk-~~V~~SS 137 (370)
T PLN02695 63 -MFCHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVK-RFFYASS 137 (370)
T ss_pred -cccceEEECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCC-EEEEeCc
Confidence 0000111 10 1112346789999998764211111 22334567888888888888775 233 4555553
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.008 Score=59.36 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.+||+||| +|.+|..++..|...+... .+.+ +|++.+.++. +.++ .. ...+..+..+++++||+
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~---~V~~----~dr~~~~~~~-a~~~-----g~--~~~~~~~~~~~~~~aDv 69 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAG---EIVG----ADRSAETRAR-AREL-----GL--GDRVTTSAAEAVKGADL 69 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCc---EEEE----EECCHHHHHH-HHhC-----CC--CceecCCHHHHhcCCCE
Confidence 46999999 5999999999999876421 2433 4565555432 2211 11 11223445677899999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
||++..
T Consensus 70 Viiavp 75 (307)
T PRK07502 70 VILCVP 75 (307)
T ss_pred EEECCC
Confidence 999743
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=62.03 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dADi 175 (405)
|||.|+||+|++|++++..|+..|. +|.. ..++.++.. .+.+..... ..++.-.....++++++|+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-----~V~~----l~R~~~~~~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~ 67 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-----QVRC----LVRNLRKAS----FLKEWGAELVYGDLSLPETLPPSFKGVTA 67 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----eEEE----EEcChHHhh----hHhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence 5899999999999999999998764 2432 233322221 111110000 0011101123567899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||.+++.. + .+.......|......+.+++++. +-+ .+|.+|
T Consensus 68 Vi~~~~~~--~-~~~~~~~~~~~~~~~~l~~aa~~~-gvk-r~I~~S 109 (317)
T CHL00194 68 IIDASTSR--P-SDLYNAKQIDWDGKLALIEAAKAA-KIK-RFIFFS 109 (317)
T ss_pred EEECCCCC--C-CCccchhhhhHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 99875421 1 112234455666677788877775 233 455544
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0038 Score=53.15 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=54.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||+|+||+|.+|..++..|....-+. +. .++.......+. ..+..... ....+..+...+.+.+.++|+||
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e----~~-~~~~~~~~~g~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFE----LV-ALVSSSRSAGKP---LSEVFPHP-KGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEE----EE-EEEESTTTTTSB---HHHTTGGG-TTTEEEBEEETSGHHHTTESEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcc----EE-EeeeeccccCCe---eehhcccc-ccccceeEeecchhHhhcCCEEE
Confidence 79999999999999999999854421 21 122222211111 11111101 11234555556778889999999
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++.+ ...-+++++.+.+ .+.+||-.+
T Consensus 72 ~a~~----------------~~~~~~~~~~~~~---~g~~ViD~s 97 (121)
T PF01118_consen 72 LALP----------------HGASKELAPKLLK---AGIKVIDLS 97 (121)
T ss_dssp E-SC----------------HHHHHHHHHHHHH---TTSEEEESS
T ss_pred ecCc----------------hhHHHHHHHHHhh---CCcEEEeCC
Confidence 9854 2455666666643 345665544
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0067 Score=61.93 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE--ecCcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i--~~~~~eal~dA 173 (405)
|+||.|||| |+||+.+|..|++.+- + +|.+ -|++.+++...... .+.... ...+.+ .....+.+++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~---~V~i----AdRs~~~~~~i~~~-~~~~v~-~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-G---EVTI----ADRSKEKCARIAEL-IGGKVE-ALQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-c---eEEE----EeCCHHHHHHHHhh-ccccce-eEEecccChHHHHHHHhcC
Confidence 689999996 9999999999999875 2 3665 57776666544322 111000 011222 12345888999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+||.++.
T Consensus 70 d~VIn~~p 77 (389)
T COG1748 70 DLVINAAP 77 (389)
T ss_pred CEEEEeCC
Confidence 99998854
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0095 Score=58.39 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH-HHHHHhhhhcCCCcceEEEecC-cccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN-PYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~~~-~~eal~dA 173 (405)
+++|+|+| .|.||..++..|...+.. +. .++.|++.+.++ +..+++.|. .+.+ ..++.++|
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~-----v~--i~g~d~~~~~~~~a~~lgv~d~---------~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLV-----VR--IIGRDRSAATLKAALELGVIDE---------LTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCe-----EE--EEeecCcHHHHHHHhhcCcccc---------cccchhhhhcccC
Confidence 57999999 599999999999998873 32 334565544332 111222221 1122 26888999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecch
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~ 249 (405)
|+||++. | +....++.+.+..+.+++++|.-+|--=......+.++.+... +.+|+-.+
T Consensus 66 D~Vivav--P--------------i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM 124 (279)
T COG0287 66 DLVIVAV--P--------------IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPM 124 (279)
T ss_pred CEEEEec--c--------------HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCC
Confidence 9999973 3 2333444444443334677776666433333344444432211 45554333
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0099 Score=61.48 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH--------hhhhcC--CCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLF--PLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D--------L~d~~~--~~~~~v~i~~~ 165 (405)
++||+||| .|.||..+|..|+..|. ++.. +|+++++++..... +.+... --......++
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-----~V~~----~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~- 71 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-----QVIG----VDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT- 71 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-
Confidence 58999999 59999999999999774 2443 46666666542211 000000 0001233332
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhH
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNT 227 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~ 227 (405)
++++||+||++...|.+... . -+...+.+.++.+.++..++.+||+-| -|...
T Consensus 72 ---~~~~aDvvii~vptp~~~~~-~-----~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 72 ---TPEPADAFLIAVPTPFKGDH-E-----PDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred ---ccccCCEEEEEcCCCCCCCC-C-----cChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 24589999998665532221 1 123444455555666554555655554 35543
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0088 Score=62.34 Aligned_cols=112 Identities=11% Similarity=0.111 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC-cccccCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN-PYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~-~~eal~d 172 (405)
+.|||.|+||+|+||++++..|+..+. +|.. +|...........+.. . . .++++ ..| ...++.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-----~V~~----ld~~~~~~~~~~~~~~--~-~--~~~~~i~~D~~~~~l~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-----SVIV----VDNFFTGRKENVMHHF--S-N--PNFELIRHDVVEPILLE 183 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-----EEEE----EeCCCccchhhhhhhc--c-C--CceEEEECCccChhhcC
Confidence 568999999999999999999998764 2332 1211111111111110 0 0 11222 112 2345678
Q ss_pred CcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 173 ADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+|+||.+++... ....+....+..|+.....+.+.+++. + .++|.++.
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g--~r~V~~SS 233 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 233 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECC
Confidence 999999876432 111234466788999889999888875 2 36766664
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0056 Score=60.55 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.|||+||| +|.+|.+++..|...|. +|.+ .+++.. .+..+++++||
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~-----~V~~----~~r~~~-----------------------~~~~~~~~~ad 49 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGH-----RVRV----WSRRSG-----------------------LSLAAVLADAD 49 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCC-----EEEE----EeCCCC-----------------------CCHHHHHhcCC
Confidence 357999999 59999999999998774 3544 333321 13346778999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh-cCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~-a~p~a~vIvvtNP 224 (405)
+||++. | .+.+.++++.+..+ ..++.+++..++.
T Consensus 50 vvi~~v--p--------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 50 VIVSAV--S--------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred EEEEEC--C--------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 999873 2 13445555556542 2367788888773
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0031 Score=61.65 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=68.1
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEecCcccccCCCcEEEE
Q 015501 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAEWALL 178 (405)
Q Consensus 101 IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~dADiVIi 178 (405)
|+||+|++|++++..|++.+-. ..++.+|.......+. ++.+... .+..+++-..+..++++++|+||.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~-----~~Vr~~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYI-----YEVRVLDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCc-----eEEEEcccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 8999999999999999998742 1233333322211111 1111110 011222222345689999999999
Q ss_pred eCCcCCCCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 179 IGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 179 ~~g~~~k~g-~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++....-.+ ..+..+...|+.--+.+.+.+.+. +.+-+|+|.-++
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~~ 118 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSIS 118 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCcc
Confidence 876432223 345567888999999999888874 455455554443
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0031 Score=64.02 Aligned_cols=114 Identities=16% Similarity=0.068 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC-CCcceEEEec-------Cc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIGI-------NP 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~-~~~~~v~i~~-------~~ 166 (405)
++|||.|+||+|+||++++..|+..+-. +|.. ++++.++.. .+..... ....++++.. ..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~----l~r~~~~~~----~l~~~~~~~~~~~~~~~~~Dl~d~~~l 80 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH----KVLA----LDVYNDKIK----HLLEPDTVPWSGRIQFHRINIKHDSRL 80 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC----EEEE----EecCchhhh----hhhccccccCCCCeEEEEcCCCChHHH
Confidence 4689999999999999999999986311 2332 233322222 1111000 0011222211 12
Q ss_pred ccccCCCcEEEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.++++++|+||.+++.... ...+..+.+..|+.-...+.+.+++. + ..+|.++.
T Consensus 81 ~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~--~r~v~~SS 136 (386)
T PLN02427 81 EGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N--KRLIHFST 136 (386)
T ss_pred HHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C--CEEEEEee
Confidence 3567789999998764321 11122344556766666667766664 2 35666664
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0087 Score=59.78 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-----Ee--cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--~~~~e 168 (405)
.++|.|+||+|+||++++..|+..|. .|.+ .+++.+.+.... ++.... ....++. ++ ....+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~-~~~~~~-~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-----TVRA----TVRDPANVKKVK-HLLDLP-GATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-----EEEE----EEcCcchhHHHH-HHHhcc-CCCCceEEEEecCCChhhHHH
Confidence 46899999999999999999998764 2433 122222222221 121110 0000111 11 11235
Q ss_pred ccCCCcEEEEeCCcCCCCCCch-hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 LFEDAEWALLIGAKPRGPGMER-AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r-~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.++++|+||.+++.......+. ...+..|+.-...+.+.+.+.. .-.++|.++-
T Consensus 74 ~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~~r~v~~SS 128 (351)
T PLN02650 74 AIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK-TVRRIVFTSS 128 (351)
T ss_pred HHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC-CceEEEEecc
Confidence 6778999998876421111122 2456778888888888887752 2245666553
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.017 Score=59.94 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC----------cceEEEec
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGI 164 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~----------~~~v~i~~ 164 (405)
++|||+||| .|.||..+|..|+.+ + ++.. +|+++++.+... ....+. ......+
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~~--~----~V~g----~D~~~~~ve~l~----~G~~~~~e~~~~~l~~~g~l~~t- 68 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGKS--R----QVVG----FDVNKKRILELK----NGVDVNLETTEEELREARYLKFT- 68 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhcC--C----EEEE----EeCCHHHHHHHH----CcCCCCCCCCHHHHHhhCCeeEE-
Confidence 468999999 799999999998763 2 2433 466666655433 111110 0123444
Q ss_pred CcccccCCCcEEEEeCCcCC
Q 015501 165 NPYELFEDAEWALLIGAKPR 184 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~ 184 (405)
.+.+++++||++|++.+.|.
T Consensus 69 ~~~~~~~~advvii~Vptp~ 88 (425)
T PRK15182 69 SEIEKIKECNFYIITVPTPI 88 (425)
T ss_pred eCHHHHcCCCEEEEEcCCCC
Confidence 34568999999999877664
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0087 Score=57.82 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=55.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|++++..|...+.+.. +.+.. .+++.+++ .+....+..+.++++|+|
T Consensus 4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~-~~i~~----~~~~~~~~----------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 4 IRVGFIG-LGKMGSALAYGIENSNIIGK-ENIYY----HTPSKKNT----------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CEEEEEC-ccHHHHHHHHHHHhCCCCCc-ceEEE----ECCChhcC----------------CeEEeCChHHHHHhCCEE
Confidence 6899999 59999999999998875543 23433 44443321 012234556778899999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|++.. .+.+.++.+.+..+- ++..||.+.+-+.
T Consensus 62 ilavk----------------p~~~~~vl~~i~~~l-~~~~iIS~~aGi~ 94 (260)
T PTZ00431 62 VLAVK----------------PDLAGKVLLEIKPYL-GSKLLISICGGLN 94 (260)
T ss_pred EEEeC----------------HHHHHHHHHHHHhhc-cCCEEEEEeCCcc
Confidence 98722 134555555555442 2334555555443
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.027 Score=54.75 Aligned_cols=116 Identities=20% Similarity=0.113 Sum_probs=75.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C-------
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------- 165 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~------- 165 (405)
.++.++.|+||++.||..+|..|+.+|. .+.| +.+++++|+..+.+|++.. .. ++.+.. |
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-----~liL----vaR~~~kL~~la~~l~~~~-~v--~v~vi~~DLs~~~~~ 71 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-----NLIL----VARREDKLEALAKELEDKT-GV--EVEVIPADLSDPEAL 71 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCcHHHHHHHHHHHHHhh-Cc--eEEEEECcCCChhHH
Confidence 3467999999999999999999999886 3555 7899999999999998754 21 222211 1
Q ss_pred ------cccccCCCcEEEEeCCcCC------CCCCchhhhHHhhHHHHH----HHHHHHHhhcCCCeEEEEeCC
Q 015501 166 ------PYELFEDAEWALLIGAKPR------GPGMERAGLLDINGQIFA----EQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 166 ------~~eal~dADiVIi~~g~~~------k~g~~r~~ll~~N~~i~~----~i~~~i~~~a~p~a~vIvvtN 223 (405)
..+..-..|+.|..+|... .+..+-.+++.-|+--.. .+.+.+.+- ..|.||+++-
T Consensus 72 ~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~--~~G~IiNI~S 143 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER--GAGHIINIGS 143 (265)
T ss_pred HHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1112235888888877532 112233456666655444 444555553 3577777763
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0092 Score=59.24 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ec------Cccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~------~~~e 168 (405)
++||.|+||+|+||++++..|+..+. +|.+.. .+. +...... ++.... .. .++.+ .. ...+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-----~V~~~~--r~~--~~~~~~~-~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 76 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-----AVNTTV--RDP--ENQKKIA-HLRALQ-EL-GDLKIFGADLTDEESFEA 76 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-----EEEEEE--CCC--CCHHHHH-HHHhcC-CC-CceEEEEcCCCChHHHHH
Confidence 57899999999999999999998764 243212 222 1111111 111100 00 11211 11 1235
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~-r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.++++|+||..++.......+ ..++...|+.-...+.+.+.+.. .-..+|.++
T Consensus 77 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~-~~~~~v~~S 130 (338)
T PLN00198 77 PIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK-SVKRVILTS 130 (338)
T ss_pred HHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEee
Confidence 578899999887642211112 22355778888888888887752 223555554
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0032 Score=56.48 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=58.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-------CcccccC
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPYELFE 171 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~eal~ 171 (405)
|+|+||+|++|+.++..|++.+. +|.+ +-++.++++. . + ++++.. ...++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-----~V~~----~~R~~~~~~~--------~-~---~~~~~~~d~~d~~~~~~al~ 59 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-----EVTA----LVRSPSKAED--------S-P---GVEIIQGDLFDPDSVKAALK 59 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-----EEEE----EESSGGGHHH--------C-T---TEEEEESCTTCHHHHHHHHT
T ss_pred eEEECCCChHHHHHHHHHHHCCC-----EEEE----EecCchhccc--------c-c---ccccceeeehhhhhhhhhhh
Confidence 78999999999999999999883 3443 2345555443 1 1 122211 1356888
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++|.||.+.+.+.+ ....++.+.+.+++. +. .+++.++
T Consensus 60 ~~d~vi~~~~~~~~-----------~~~~~~~~~~a~~~~-~~-~~~v~~s 97 (183)
T PF13460_consen 60 GADAVIHAAGPPPK-----------DVDAAKNIIEAAKKA-GV-KRVVYLS 97 (183)
T ss_dssp TSSEEEECCHSTTT-----------HHHHHHHHHHHHHHT-TS-SEEEEEE
T ss_pred hcchhhhhhhhhcc-----------ccccccccccccccc-cc-ccceeee
Confidence 99999998764332 167788888888885 23 3555554
|
... |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0086 Score=59.47 Aligned_cols=117 Identities=9% Similarity=0.034 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dA 173 (405)
.++|.|+||+|++|++++..|+..+-. ..|.+ .+++.........++......+ ....++ ....+++++.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~---~~V~~----~~r~~~~~~~~~~~~~~~~~~~-v~~Dl~d~~~l~~~~~~i 75 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNP---KKIII----YSRDELKQWEMQQKFPAPCLRF-FIGDVRDKERLTRALRGV 75 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCC---cEEEE----EcCChhHHHHHHHHhCCCcEEE-EEccCCCHHHHHHHHhcC
Confidence 478999999999999999999986411 12433 2333233222222221100000 001111 1123466789
Q ss_pred cEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 174 EWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 174 DiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|+||.+++....+ ..+..+.+..|+.-...+.+.+.+. .-+.||.++
T Consensus 76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~--~~~~iV~~S 124 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN--GVKRVVALS 124 (324)
T ss_pred CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEe
Confidence 9999987753222 1233457788888888888888875 223566655
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.021 Score=56.09 Aligned_cols=88 Identities=7% Similarity=0.035 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.|||.|+||+|++|++++..|+..+. ++.+. ..+. ...+.+..|+.+ .++|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-----~V~~~--~~~~--~~~~~v~~~l~~-------------------~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-----DFHYG--SGRL--ENRASLEADIDA-------------------VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-----EEEEe--cCcc--CCHHHHHHHHHh-------------------cCCCE
Confidence 37999999999999999999998764 24321 1111 111222222221 16899
Q ss_pred EEEeCCcCCCCC-----CchhhhHHhhHHHHHHHHHHHHhh
Q 015501 176 ALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 176 VIi~~g~~~k~g-----~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
||.+++....+. .+..+....|......+++.+++.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~ 101 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER 101 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 998877543222 134456788888888888888876
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0048 Score=61.52 Aligned_cols=107 Identities=10% Similarity=0.087 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC---c----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P---- 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~---~---- 166 (405)
||||.|+||+|++|++++..|+.. +. .|.. +++..+... ++... + .+.+. .| +
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~-----~V~~----~~r~~~~~~----~~~~~--~---~~~~~~~Dl~~~~~~~ 62 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW-----EVYG----MDMQTDRLG----DLVNH--P---RMHFFEGDITINKEWI 62 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC-----eEEE----EeCcHHHHH----HhccC--C---CeEEEeCCCCCCHHHH
Confidence 579999999999999999999874 32 2332 233322211 11110 0 11111 11 1
Q ss_pred ccccCCCcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.++++|+||.+++... ....+.......|..-...+.+.+.+. + ..+|.++.
T Consensus 63 ~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~--~~~v~~SS 118 (347)
T PRK11908 63 EYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 118 (347)
T ss_pred HHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C--CeEEEEec
Confidence 245679999998765421 112223334556777777788877774 2 46665554
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.028 Score=56.24 Aligned_cols=121 Identities=12% Similarity=-0.002 Sum_probs=66.6
Q ss_pred hhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-CcceEEEec-C---
Q 015501 91 KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIGI-N--- 165 (405)
Q Consensus 91 ~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-~~~~v~i~~-~--- 165 (405)
|-.-+++||.|+||+|++|++++..|+..+. +|.. +|+..........++...... ...++.+.. |
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~-----~V~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQ-----TVIG----LDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK 80 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence 3434568999999999999999999998764 2322 222111111000111100000 001122211 2
Q ss_pred ---cccccCCCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 ---PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ---~~eal~dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..+.++++|+||..++....+ ..+.......|..-...+.+.+++. +-. .+|.++
T Consensus 81 ~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~-~~v~~S 140 (348)
T PRK15181 81 FTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVS-SFTYAA 140 (348)
T ss_pred HHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence 123478899999987643221 1233456778888888888888875 222 455554
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=61.56 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC---C
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---D 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---d 172 (405)
|.+|+||| .|.+|..+|..|+..|. .|.+ .|++.++.+.......... ..+....+..+.++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-----~V~v----~dr~~~~~~~l~~~~~~~g----~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-----KISV----YNRTYEKTEEFVKKAKEGN----TRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHhhhhcC----CcceecCCHHHHHhcCCC
Confidence 46899999 69999999999999875 2554 5677676654433211101 12333444445554 5
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
+|+|+++... .+.++++.+.+..+..++.+||..+| |-++.-
T Consensus 67 ~d~Iil~v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~ 110 (470)
T PTZ00142 67 PRKVILLIKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTER 110 (470)
T ss_pred CCEEEEEeCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHH
Confidence 8988776321 24555555556555557788999997 455443
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.011 Score=58.01 Aligned_cols=115 Identities=16% Similarity=0.044 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-------cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~e 168 (405)
-+||.|+||+|+||++++..|+..|. ++... .++.+... ....+.... ....++.+. ....+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-----~V~~~----~r~~~~~~-~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 72 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-----TVKAT----VRDPNDPK-KTEHLLALD-GAKERLHLFKANLLEEGSFDS 72 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-----EEEEE----EcCCCchh-hHHHHHhcc-CCCCceEEEeccccCcchHHH
Confidence 46899999999999999999998775 24321 12212111 111111100 000111111 12335
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~-r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+++++|+||..++........ ....+..|+.-...+.+.+.+..+. ..+|.++
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~~v~~S 126 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSV-KRVVVTS 126 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEcc
Confidence 678999999987643211112 2256677888888888887764111 2455544
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0035 Score=61.67 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=68.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEe-cC------cccc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIG-IN------PYEL 169 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~-~~------~~ea 169 (405)
|.|+||+|+||+.++..|+..+.. .|. + .|+++..+.....++..... .+...+... .| ....
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~----~li--l--~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK----KLI--L--FDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S----EEE--E--EES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCC----eEE--E--eCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 679999999999999999987541 243 3 56777788877777742210 111111111 11 2456
Q ss_pred cC--CCcEEEEeCCcCCCCCCc--hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC----CchhHHH
Q 015501 170 FE--DAEWALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (405)
Q Consensus 170 l~--dADiVIi~~g~~~k~g~~--r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt----NP~d~~t 229 (405)
++ +.|+|+.+|..-.-|-++ -.+.+.-|+-=-+.+++...++ +-+-.|.+-| ||.++|.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS--SHHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCCCcHHH
Confidence 67 999999987643222222 3345677777777888888886 3555555555 5766654
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=58.14 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=56.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|..++..|+..+. ++.+ .|++.++++..... .. .. .....+..+.+.++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-----~V~~----~dr~~~~~~~l~~~---g~-~~---~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-----DCVG----YDHDQDAVKAMKED---RT-TG---VANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHc---CC-cc---cCCHHHHHhhcCCCCEE
Confidence 5899999 59999999999998764 3544 46666665544321 11 00 00001122355789999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+++. |. ..+.++.+.+.....++.+||..+|.
T Consensus 64 i~~v--p~--------------~~~~~v~~~l~~~l~~g~ivid~st~ 95 (298)
T TIGR00872 64 WVMV--PH--------------GIVDAVLEELAPTLEKGDIVIDGGNS 95 (298)
T ss_pred EEEc--Cc--------------hHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 9873 21 13444444555544456788888775
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=57.96 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||.|+|| |.+|.++++.|+..++- .|.+ +|++.+++++.+.++.+.. +. ..+....+.++.++++|+
T Consensus 127 ~k~vlIlGa-GGaaraia~aL~~~G~~----~I~I----~nR~~~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLGA-GGAGAAVAHALLTLGVE----RLTI----FDVDPARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 468999995 99999999999987752 3555 5788888888888876533 21 122212233567889999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
||.+
T Consensus 196 VIna 199 (284)
T PRK12549 196 LVHA 199 (284)
T ss_pred EEEC
Confidence 9986
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0087 Score=52.03 Aligned_cols=75 Identities=23% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..++.|+|| |.+|..+++.|...+. ..|.+ .+++.++++..+..+... ...+.-..+..+.+.++|
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~----~~i~i----~nRt~~ra~~l~~~~~~~----~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGA----KEITI----VNRTPERAEALAEEFGGV----NIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTS----SEEEE----EESSHHHHHHHHHHHTGC----SEEEEEGGGHCHHHHTES
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCC----CEEEE----EECCHHHHHHHHHHcCcc----ccceeeHHHHHHHHhhCC
Confidence 3579999995 9999999999999876 23655 678888888777665211 111222344556788999
Q ss_pred EEEEeCCc
Q 015501 175 WALLIGAK 182 (405)
Q Consensus 175 iVIi~~g~ 182 (405)
+||.+-+.
T Consensus 78 ivI~aT~~ 85 (135)
T PF01488_consen 78 IVINATPS 85 (135)
T ss_dssp EEEE-SST
T ss_pred eEEEecCC
Confidence 99987543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.031 Score=55.16 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccc-cchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccC--
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFE-- 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~-d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~-- 171 (405)
|||.|+||+|++|++++..|+..+. .+.+ ++. ............++.+.. .......++. ...++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dl~d~~~~~~~~~~~ 72 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVVI--LDNLCNSKRSVLPVIERLGGKH-PTFVEGDIRNEALLTEILHDH 72 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-----eEEE--EecCCCchHhHHHHHHHhcCCC-ceEEEccCCCHHHHHHHHhcC
Confidence 5899999999999999999998764 2433 111 111111101111111100 0000111110 0112333
Q ss_pred CCcEEEEeCCcCCC-C-CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRG-P-GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k-~-g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||..++.... + .....+.+..|+.....+.+.+++. .-..+|.++.
T Consensus 73 ~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~Ss 124 (338)
T PRK10675 73 AIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA--NVKNLIFSSS 124 (338)
T ss_pred CCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEecc
Confidence 58999988764321 1 1223456788888888898888875 2234555554
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.011 Score=57.71 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=43.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||+||| .|.+|..++..|+..+. +|.+ +|++.++++... +.. .....+..+++++||+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-----~V~~----~dr~~~~~~~~~----~~g------~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-----QLHV----TTIGPEVADELL----AAG------AVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHH----HCC------CcccCCHHHHHhcCCEEE
Confidence 699999 59999999999998764 3544 466666554322 111 112245668899999999
Q ss_pred EeC
Q 015501 178 LIG 180 (405)
Q Consensus 178 i~~ 180 (405)
++.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 873
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.021 Score=54.93 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=45.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|..++..|...+.-. ..+.+ .+++.++++..+..+ + .+.+..+..+.+++||+|
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~~--~~i~v----~~r~~~~~~~l~~~~-----~---~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPADV--SEIIV----SPRNAQIAARLAERF-----P---KVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCCh--heEEE----ECCCHHHHHHHHHHc-----C---CceEeCCHHHHHHhCCEE
Confidence 4899999 5999999999999876411 12333 456666654333221 1 133445566678899999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 66 ilav 69 (258)
T PRK06476 66 FLAV 69 (258)
T ss_pred EEEe
Confidence 9874
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=57.57 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH-HHHHhhhhcCCCcceEEEe-------cCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIG-------INP 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g-~a~DL~d~~~~~~~~v~i~-------~~~ 166 (405)
++++|.|+||+|++|++++..|+..|. .|.. ..++.+.... ...++... ..++.+. ...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~ 75 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY-----TVKG----TVRNPDDPKNTHLRELEGG----KERLILCKADLQDYEAL 75 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EeCCchhhhHHHHHHhhCC----CCcEEEEecCcCChHHH
Confidence 357899999999999999999998774 2433 1222222111 11112111 0112111 122
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.++++++|+||.+++... .+..+.+..|+.-...+.+.+.+. +.. .+|.++
T Consensus 76 ~~~~~~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~-~v~-r~V~~S 126 (342)
T PLN02214 76 KAAIDGCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEA-KVK-RVVITS 126 (342)
T ss_pred HHHHhcCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 456789999999877431 223455677888888888888775 232 455444
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.021 Score=56.16 Aligned_cols=117 Identities=14% Similarity=0.022 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-----e--cCcc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-----G--INPY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-----~--~~~~ 167 (405)
+.++|.|+||+|+||++++..|+..|. .+.+.. ++.+.+... ..+.... ....++.+ + ....
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-----~V~~~~----r~~~~~~~~-~~~~~~~-~~~~~~~~~~~D~~d~~~~~ 72 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY-----TINATV----RDPKDRKKT-DHLLALD-GAKERLKLFKADLLDEGSFE 72 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEE----cCCcchhhH-HHHHhcc-CCCCceEEEeCCCCCchHHH
Confidence 457999999999999999999998764 243321 222222211 1111100 00011211 1 1123
Q ss_pred cccCCCcEEEEeCCcCCCC-CC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFEDAEWALLIGAKPRGP-GM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~-g~-~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+++.|+||.+++..... .. .-...+..|..-...+.+.+.+.. ..+.||+++-
T Consensus 73 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~-~~~~iv~~SS 129 (325)
T PLN02989 73 LAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS-SVKRVILTSS 129 (325)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEecc
Confidence 4567899999987743211 11 123456778887888888777652 2345665553
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=53.09 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=58.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH---HHH---HHhhhhcCCCcceEEEecCccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVA---MELEDSLFPLLREVKIGINPYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~---g~a---~DL~d~~~~~~~~v~i~~~~~eal 170 (405)
|||+||||+|.+|+.++.....+|. ++.- +-+|..++. ++. .|+.|. +...+++
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH-----eVTA----ivRn~~K~~~~~~~~i~q~Difd~-----------~~~a~~l 60 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH-----EVTA----IVRNASKLAARQGVTILQKDIFDL-----------TSLASDL 60 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC-----eeEE----EEeChHhccccccceeecccccCh-----------hhhHhhh
Confidence 7999999999999999999999886 2322 234444432 111 111111 1234789
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++-|+||-+-+... ++.+ ..-.+....+...++.. -...+++++-
T Consensus 61 ~g~DaVIsA~~~~~-~~~~-----~~~~k~~~~li~~l~~a--gv~RllVVGG 105 (211)
T COG2910 61 AGHDAVISAFGAGA-SDND-----ELHSKSIEALIEALKGA--GVPRLLVVGG 105 (211)
T ss_pred cCCceEEEeccCCC-CChh-----HHHHHHHHHHHHHHhhc--CCeeEEEEcC
Confidence 99999998754321 2211 11123355555666663 3567777774
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.014 Score=58.71 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+.++|.|+||+|.||+.++..|+.. +.. .+.+ ++++.++++..+.++.+.. + .+..+++.++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~----~lil----v~R~~~rl~~La~el~~~~--------i-~~l~~~l~~a 216 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVA----ELLL----VARQQERLQELQAELGGGK--------I-LSLEEALPEA 216 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCC----EEEE----EcCCHHHHHHHHHHhcccc--------H-HhHHHHHccC
Confidence 3479999999899999999999853 321 2443 5666677776665553211 1 1345889999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
|+|+.+++.+...-.+..++ .+..+++-++-|=|+-
T Consensus 217 DiVv~~ts~~~~~~I~~~~l-------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 217 DIVVWVASMPKGVEIDPETL-------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred CEEEECCcCCcCCcCCHHHh-------------------CCCeEEEEecCCCCCC
Confidence 99998877653111121111 2557888888887654
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.047 Score=55.30 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=41.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.||+||| .|.||.+++..|...+. ++.+ ++.|.+...+. .+. . . ... -...++..+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-----~v~i--~~~~~~~~~~~-~a~--~--~-~~~--~~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-----DVFI--IGYDPSAAQLA-RAL--G--F-GVI--DELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-----CeEE--EEeCCCHHHHH-HHh--c--C-CCC--cccccCHHHHhcCCCEE
Confidence 4799999 59999999999998775 2443 33444322211 111 1 0 111 11234456788999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 65 ilav 68 (359)
T PRK06545 65 VLAV 68 (359)
T ss_pred EEeC
Confidence 9973
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.013 Score=57.63 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+||| .|.+|..++..|+..+. .+.+ +|++.++++.... .. .....+..+++++||+
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G~-----~V~v----~d~~~~~~~~~~~----~g------~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQGH-----QLQV----FDVNPQAVDALVD----KG------ATPAASPAQAAAGAEF 60 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHHH----cC------CcccCCHHHHHhcCCE
Confidence 46999999 59999999999998764 2443 4666566543321 11 1233456678899999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
||++
T Consensus 61 Vi~~ 64 (296)
T PRK15461 61 VITM 64 (296)
T ss_pred EEEe
Confidence 9987
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.035 Score=54.33 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||+||| .|.+|..++..|+..+. ++.+ .|++.++.+... .. .+....+..+.+++||+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~-----~v~~----~d~~~~~~~~~~----~~------g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV----YDRNPEAVAEVI----AA------GAETASTAKAVAEQCDV 61 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHH----HC------CCeecCCHHHHHhcCCE
Confidence 36899999 59999999999998664 2433 466655544222 11 12233455677899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
||++.
T Consensus 62 vi~~v 66 (296)
T PRK11559 62 IITML 66 (296)
T ss_pred EEEeC
Confidence 99873
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=64.53 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=65.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceE---EEecC---
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV---KIGIN--- 165 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v---~i~~~--- 165 (405)
.++++||.|+||+|+||++++..|+.. +. .|.. +++...... ++... +. .++ .++..
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-----~V~~----l~r~~~~~~----~~~~~--~~-~~~~~gDl~d~~~~ 375 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY-----EVYG----LDIGSDAIS----RFLGH--PR-FHFVEGDISIHSEW 375 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCc-----EEEE----EeCCchhhh----hhcCC--Cc-eEEEeccccCcHHH
Confidence 355789999999999999999999974 33 2322 233222111 11100 00 011 11111
Q ss_pred cccccCCCcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 166 PYELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
..++++++|+||.+++... .......+....|+.....+.+++.+. + ..+|.++.
T Consensus 376 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~--~~~V~~SS 432 (660)
T PRK08125 376 IEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N--KRIIFPST 432 (660)
T ss_pred HHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C--CeEEEEcc
Confidence 1346789999998776432 122234456778888888888888885 3 35555554
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.023 Score=56.38 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..++|+|||+ |.+|..++..|...+. ..|.+ .+++.++++..+.++.. .+....+.++.+.++|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~----~~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGV----AEITI----ANRTYERAEELAKELGG-------NAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCC----CEEEE----EeCCHHHHHHHHHHcCC-------eEEeHHHHHHHHhcCC
Confidence 4689999995 9999999999987543 13544 56776766656654321 1211234567789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
+||.+.+.+. + ..++... ++.......+++-+++|-|+=
T Consensus 241 vVi~at~~~~-~-----------~~~~~~~---~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 241 VVISATGAPH-Y-----------AKIVERA---MKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred EEEECCCCCc-h-----------HHHHHHH---HhhCCCCCeEEEEeCCCCCCc
Confidence 9998755432 1 1122222 122111456899999998743
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.015 Score=57.81 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=67.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|+|| |.||+.++..|.+.+ - .+.+.. -++..+++...-..+.+.. ...........+.+....+|+|
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~----~V~~~~--R~~~~~~l~~~GL~i~~~~-~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-H----DVTLLV--RSRRLEALKKKGLRIEDEG-GNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-C----eEEEEe--cHHHHHHHHhCCeEEecCC-CccccccccccChhhcCCCCEE
Confidence 69999995 999999999999987 2 143311 1211122222222222222 1001122334566778899999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA 236 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s 236 (405)
|++... --..+..+.+..+.+++.+|+..=|=....- .+.+..
T Consensus 72 iv~vKa----------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~ 114 (307)
T COG1893 72 IVTVKA----------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKIL 114 (307)
T ss_pred EEEecc----------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHhC
Confidence 997431 1234555666777777889998989877665 454443
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.067 Score=53.47 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC------ccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------~~e 168 (405)
.+||.|+||+|+||++++..|++.|. .+.+ .+++.+.......++.. ..++.+. .| ..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~ 75 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY-----TVHA----TLRDPAKSLHLLSKWKE-----GDRLRLFRADLQEEGSFDE 75 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHhhcc-----CCeEEEEECCCCCHHHHHH
Confidence 56999999999999999999998764 2433 22332322222222211 1122221 11 234
Q ss_pred ccCCCcEEEEeCCcCCCC---C-Cchh-----hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 LFEDAEWALLIGAKPRGP---G-MERA-----GLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~---g-~~r~-----~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++++.|.||.+++..... . .+-. ..++.|+.-...+.+.+.+.. .-.++|.++-
T Consensus 76 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~-~~~~~v~~SS 138 (353)
T PLN02896 76 AVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK-TVKRVVFTSS 138 (353)
T ss_pred HHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC-CccEEEEEec
Confidence 567899999987653211 1 1111 223333455666667666541 1235665553
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.04 Score=54.54 Aligned_cols=125 Identities=16% Similarity=0.124 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH--hhhhcCCCcceEEEecCcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--LEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D--L~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.|||+|+|| |.||..++..|...|. ++.+ +++..+.++....+ +.-........+.+.....+.....
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~-----~V~l----v~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~ 71 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL-----PVRL----ILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPI 71 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC-----CeEE----EEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccccccc
Confidence 369999995 9999999999998763 3665 44543444322211 1000000000111112222345688
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecch
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~ 249 (405)
|+||++... .+ ..+..+.+..+.++++.|+.+-|=++..-.+. +..+ +.++++..+.
T Consensus 72 D~viv~vK~---------------~~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~~~--~~~v~~g~~~ 128 (305)
T PRK05708 72 HRLLLACKA---------------YD-AEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-ARVP--HARCIFASST 128 (305)
T ss_pred CEEEEECCH---------------Hh-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-HhCC--CCcEEEEEee
Confidence 999987431 11 22334455555567888999999877554433 3322 1356655443
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.01 Score=56.93 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=58.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi 178 (405)
|.|+||+|++|++++..|+..+. .|.. .+++.+.......+ .. . .. ......++++++|+||.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~---~~-~---~~-~~~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-----EVTI----LTRSPPAGANTKWE---GY-K---PW-APLAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-----EEEE----EeCCCCCCCcccce---ee-e---cc-cccchhhhcCCCCEEEE
Confidence 57999999999999999998764 2433 23332322111000 00 0 00 01234578889999999
Q ss_pred eCCcCCCCC--C--chhhhHHhhHHHHHHHHHHHHhh
Q 015501 179 IGAKPRGPG--M--ERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 179 ~~g~~~k~g--~--~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
+++.+...+ . ....+...|+.....+.+.+.+.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~ 100 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA 100 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 887543222 1 22345667888889999988886
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.036 Score=54.21 Aligned_cols=119 Identities=12% Similarity=0.043 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcc--eEEEe--cCcccccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIG--INPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~--~v~i~--~~~~eal~ 171 (405)
.++|.|+||+|+||++++..|+..|. .+.+ +..+.....+.....++.... .... ...++ ....++++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-----~V~~--~~R~~~~~~~~~~~~~l~~~~-~~~~~~~~Dl~d~~~~~~~l~ 77 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-----TVHA--AVQKNGETEIEKEIRGLSCEE-ERLKVFDVDPLDYHSILDALK 77 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--EEcCchhhhHHHHHHhcccCC-CceEEEEecCCCHHHHHHHHc
Confidence 45899999999999999999998875 2433 111111122222222221100 0000 01111 11246788
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|.|+...+.+........+.+..|..-...+.+.+.+.. .-..||+++-
T Consensus 78 ~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~v~riV~~SS 128 (297)
T PLN02583 78 GCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD-TIEKVVFTSS 128 (297)
T ss_pred CCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEecc
Confidence 99998865432211111123467788888888888877652 1235555543
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.011 Score=57.62 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dAD 174 (405)
|||.|+||+|.+|++++..|+..+. .+.. ++++.+... ++.+..... ....++ ....++++++|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~----~~~~~~~~~-~~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-----EVRV----LVRPTSDRR----NLEGLDVEI-VEGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-----EEEE----EEecCcccc----ccccCCceE-EEeeCCCHHHHHHHHhCCC
Confidence 4899999999999999999998764 2433 233333221 111100000 011111 11245677899
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||..++.......+.......|+.....+++.+.+.. -..+|.++.
T Consensus 67 ~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS 113 (328)
T TIGR03466 67 ALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAG--VERVVYTSS 113 (328)
T ss_pred EEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEec
Confidence 99987654222223344566778888888888877642 235555554
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.047 Score=53.00 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=39.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|..++..|...+.. ..+.. +|++.+.++. +.++ .. +....+ .+++.+||+|
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~---~~v~~----~d~~~~~~~~-~~~~-----g~---~~~~~~-~~~~~~aD~V 62 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLI---SKVYG----YDHNELHLKK-ALEL-----GL---VDEIVS-FEELKKCDVI 62 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCC---CEEEE----EcCCHHHHHH-HHHC-----CC---CcccCC-HHHHhcCCEE
Confidence 4899999 599999999999987751 12332 4565555442 2221 11 111122 3334569999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 63 ilav 66 (275)
T PRK08507 63 FLAI 66 (275)
T ss_pred EEeC
Confidence 9873
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.035 Score=55.84 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=43.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.+|+||+|+||+|.+|..++..|.+.+.- ...|..+-..... |.-+.+.. ....+...+.++++++
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP----~~~l~~v~s~~~a----G~~l~~~~------~~l~~~~~~~~~~~~v 67 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFP----VGTLHLLASSESA----GHSVPFAG------KNLRVREVDSFDFSQV 67 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCC----ceEEEEEECcccC----CCeeccCC------cceEEeeCChHHhcCC
Confidence 46789999999999999999999965431 1344333222211 21111111 1334433333457899
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+|+++.+
T Consensus 68 D~vFla~p 75 (336)
T PRK05671 68 QLAFFAAG 75 (336)
T ss_pred CEEEEcCC
Confidence 99998643
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.038 Score=54.34 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=45.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||++|| .|.+|+.+|..|+..|+ ++.+ .|++.++.... +.... ........|+.++||+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-----~v~v----~~r~~~ka~~~---~~~~G------a~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-----EVTV----YNRTPEKAAEL---LAAAG------ATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-----EEEE----EeCChhhhhHH---HHHcC------CcccCCHHHHHHhCCEE
Confidence 5899999 79999999999999885 3444 56665653222 22211 12334567999999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|.+-
T Consensus 62 itmv 65 (286)
T COG2084 62 ITML 65 (286)
T ss_pred EEec
Confidence 9873
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.083 Score=52.43 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c--Ccc----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPY---- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~---- 167 (405)
..+||.|+||+|++|++++..|+..+. .|.+ .++...........+.+.......++... . .+.
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-----~V~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~ 74 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY-----KVVV----IDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALE 74 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHH
Confidence 357999999999999999999998763 2432 22211111100111111100000111111 1 112
Q ss_pred cccC--CCcEEEEeCCcCC-CCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFE--DAEWALLIGAKPR-GPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~--dADiVIi~~g~~~-k~g-~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.++ ++|+||.+++... ... ......+..|......+++.+.+. +. ..+|.++.
T Consensus 75 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~Ss 132 (352)
T PLN02240 75 KVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GC-KKLVFSSS 132 (352)
T ss_pred HHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEcc
Confidence 2232 6899999876532 111 123456778888888888887764 22 34565554
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.022 Score=56.87 Aligned_cols=117 Identities=13% Similarity=0.005 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEec--CcccccC-
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELFE- 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~~eal~- 171 (405)
.++|.|+||+|++|++++..|++.|. .|.. .+++..........+.... ... ....++. +..+.++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~ 73 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-----EVYG----YSLDPPTSPNLFELLNLAK-KIEDHFGDIRDAAKLRKAIAE 73 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-----EEEE----EeCCCccchhHHHHHhhcC-CceEEEccCCCHHHHHHHHhh
Confidence 47899999999999999999998764 2432 2333222211111111000 000 0011110 1123333
Q ss_pred -CCcEEEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 -DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 -dADiVIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.|+||.+++.+.. ...+-...+..|......+.+.+.+. +....+|.++.
T Consensus 74 ~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~iv~~SS 127 (349)
T TIGR02622 74 FKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAI-GSVKAVVNVTS 127 (349)
T ss_pred cCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEec
Confidence 35999988774321 11123345677888888888887764 22346666664
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.083 Score=52.43 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-CCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dA 173 (405)
+++||+||| .|.+|..++..|...+. .+.. +|++.. ...+.++ . +....+..+.+ .++
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G~-----~V~~----~d~~~~--~~~a~~~-----g----v~~~~~~~e~~~~~a 93 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQGH-----TVLA----TSRSDY--SDIAAEL-----G----VSFFRDPDDFCEEHP 93 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCC-----EEEE----EECccH--HHHHHHc-----C----CeeeCCHHHHhhCCC
Confidence 457999999 59999999999987652 2433 344422 1222221 1 11233444444 479
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHH-HhhcCCCeEEEEeCC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKAL-NAVASRNVKVIVVGN 223 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i-~~~a~p~a~vIvvtN 223 (405)
|+||++... ..+.++.+.+ ..+.+++++|+.++.
T Consensus 94 DvVilavp~----------------~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 94 DVVLLCTSI----------------LSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred CEEEEecCH----------------HHHHHHHHhhhhhccCCCCEEEecCC
Confidence 999997431 2334444444 222346777777776
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.1 Score=51.32 Aligned_cols=113 Identities=14% Similarity=0.050 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c------Cccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~------~~~e 168 (405)
.++|.|+||+|+||++++..|+..|. .|.+. .++....+. ...+.... ....++.+. . ...+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~-~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 73 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY-----TVKAT----VRDLTDRKK-TEHLLALD-GAKERLKLFKADLLEESSFEQ 73 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----ECCCcchHH-HHHHHhcc-CCCCceEEEecCCCCcchHHH
Confidence 46999999999999999999998764 24321 112121111 11111100 001112221 1 1234
Q ss_pred ccCCCcEEEEeCCcCCCCCC--chhhhHHhhHHHHHHHHHHHHhhcCCC-eEEEEeC
Q 015501 169 LFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRN-VKVIVVG 222 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~--~r~~ll~~N~~i~~~i~~~i~~~a~p~-a~vIvvt 222 (405)
+++++|+||.+++... +.. ...+++..|+.....+.+.+.+. ++ ..||.++
T Consensus 74 ~~~~~d~vih~A~~~~-~~~~~~~~~~~~~nv~gt~~ll~~~~~~--~~v~rvV~~S 127 (322)
T PLN02986 74 AIEGCDAVFHTASPVF-FTVKDPQTELIDPALKGTINVLNTCKET--PSVKRVILTS 127 (322)
T ss_pred HHhCCCEEEEeCCCcC-CCCCCchhhhhHHHHHHHHHHHHHHHhc--CCccEEEEec
Confidence 5778999999876421 111 12235667877777888777664 22 2455554
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.081 Score=50.90 Aligned_cols=46 Identities=22% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++|.|+||+|.||++++..|+..|. .+.+ .+++.+.++....++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-----KLVL----ADVQQDALDRAVAELR 51 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHHH
Confidence 46899999999999999999998775 2443 3555556665555554
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.04 Score=58.39 Aligned_cols=126 Identities=20% Similarity=0.145 Sum_probs=83.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc------ceEEEecCcc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL------REVKIGINPY 167 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~------~~v~i~~~~~ 167 (405)
-+-++|-|+||+|++|+.+...++..+. .+|.+ .++++.++....++|.+.. +.. ++|.-..-..
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p----~~i~l----~~~~E~~~~~i~~el~~~~-~~~~~~~~igdVrD~~~~~ 318 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNP----KEIIL----FSRDEYKLYLIDMELREKF-PELKLRFYIGDVRDRDRVE 318 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCC----CEEEE----ecCchHHHHHHHHHHHhhC-CCcceEEEecccccHHHHH
Confidence 3457999999999999999999998753 23443 4666667776777776642 211 1222112235
Q ss_pred cccCC--CcEEEEeCCcCCCCCCchh--hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC----CchhHHH
Q 015501 168 ELFED--AEWALLIGAKPRGPGMERA--GLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (405)
Q Consensus 168 eal~d--ADiVIi~~g~~~k~g~~r~--~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt----NP~d~~t 229 (405)
+++++ .|+|+.+|..-.-|-+|.. .-..-|+-=-..++++..+. +=+..|++-| ||.|+|.
T Consensus 319 ~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 319 RAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCchHhh
Confidence 68888 9999998876555655433 44566777777888877775 3455566555 7777664
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.023 Score=55.95 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=53.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC---C
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d---A 173 (405)
|||+||| .|.+|..++..|...+. +|.+ .|++.++++... +. . .....+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-----~v~v----~dr~~~~~~~~~----~~--g----~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-----EVVG----YDVNQEAVDVAG----KL--G----ITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHH----HC--C----CeecCCHHHHHHhCCCC
Confidence 4899999 59999999999998764 2443 466666554322 11 1 2233344455544 6
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|+||++... -+.++++...+.....++.+||..++
T Consensus 61 dvVi~~vp~---------------~~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 61 RTIWVMVPA---------------GEVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred CEEEEEecC---------------chHHHHHHHHHhccCCCCCEEEECCC
Confidence 899887321 12333333344433335667777754
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.083 Score=49.38 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.+.....++.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 52 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-----TVAF----NDGLAAEARELAAALE 52 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 47899999999999999999998764 2443 3555565555555554
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.049 Score=55.29 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=43.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (405)
+||+|+||+|.||+.+...|....-|.. ..+.++...+. .|....+. .....+.. .+.+++++.|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~~~~ss~~s----~g~~~~f~------~~~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRPVFFSTSQL----GQAAPSFG------GTTGTLQDAFDIDALKALDI 67 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccEEEEEchhh----CCCcCCCC------CCcceEEcCcccccccCCCE
Confidence 4899999999999999998884444432 34444433222 12211111 11223332 23358999999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
|++++|
T Consensus 68 vffa~g 73 (366)
T TIGR01745 68 IITCQG 73 (366)
T ss_pred EEEcCC
Confidence 999765
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.058 Score=52.60 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=59.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhH-HHHHHHhhhhcCCCcceEEEecC-ccc-----ccC
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL-EGVAMELEDSLFPLLREVKIGIN-PYE-----LFE 171 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l-~g~a~DL~d~~~~~~~~v~i~~~-~~e-----al~ 171 (405)
|.|+||+|+||++++..|+..|. ..+.+ ++........ .-...|+.|.. .. .+ ..+ .+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~----~~v~~--~~~~~~~~~~~~~~~~~~~d~~-~~-------~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI----TDILV--VDNLKDGTKFVNLVDLDIADYM-DK-------EDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC----ceEEE--ecCCCcchHHHhhhhhhhhhhh-hH-------HHHHHHHhcccccC
Confidence 68999999999999999998764 12332 2211111110 00112222211 00 00 111 224
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||.+++.+.....+.......|......+.+.+.+.. ..+|..+-
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~---~~~i~~SS 116 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASS 116 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcC---CcEEEEcc
Confidence 78999998764332222333466778888888888887742 35555543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.027 Score=55.57 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=40.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC---CC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---dA 173 (405)
|||+||| .|.+|+.++..|+..+. ++.+ .|+++++++... +. . +....+..+.++ ++
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~-----~v~v----~dr~~~~~~~~~----~~--g----~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH-----EVVG----YDRNPEAVEALA----EE--G----ATGADSLEELVAKLPAP 60 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC-----eEEE----EECCHHHHHHHH----HC--C----CeecCCHHHHHhhcCCC
Confidence 4899999 59999999999998764 3544 466666554332 11 1 123333334444 46
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+||++
T Consensus 61 dvvi~~ 66 (301)
T PRK09599 61 RVVWLM 66 (301)
T ss_pred CEEEEE
Confidence 998886
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.054 Score=55.10 Aligned_cols=73 Identities=12% Similarity=0.212 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (405)
|++|+|+||+|.+|..+...|+...-|.. ..+.++.... ..+...++.+ ....+. ..+.++++++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~---~~l~~~ss~~----sg~~~~~f~g------~~~~v~~~~~~~~~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL---IEPVFFSTSQ----AGGAAPSFGG------KEGTLQDAFDIDALKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcEEEecchh----hCCcccccCC------CcceEEecCChhHhcCCC
Confidence 57999999999999999986666555432 1232332221 1111111111 111222 23356789999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+|+++++
T Consensus 68 ivf~a~~ 74 (369)
T PRK06598 68 IIITCQG 74 (369)
T ss_pred EEEECCC
Confidence 9999754
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.098 Score=49.04 Aligned_cols=46 Identities=30% Similarity=0.361 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
|++|.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~ 46 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA-----RLYL----AARDVERLERLADDLR 46 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 56899999999999999999998774 2443 3555555554544443
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.028 Score=53.33 Aligned_cols=117 Identities=18% Similarity=0.094 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--Ccccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYEL---- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~ea---- 169 (405)
|+++.|+||+|.+|..++..|++.|. .+.+ .+++.+.++....++.... .......++. +..+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW-----RVGA----YDINEAGLAALAAELGAGN-AWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHhcCCc-eEEEEecCCCHHHHHHHHHHH
Confidence 46799999999999999999998774 2443 3555555554444332111 0001112211 01111
Q ss_pred ----cCCCcEEEEeCCcCCCCCC---c---hhhhHHhhHHHHHHH----HHHHHhhcCCCeEEEEeCCc
Q 015501 170 ----FEDAEWALLIGAKPRGPGM---E---RAGLLDINGQIFAEQ----GKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 ----l~dADiVIi~~g~~~k~g~---~---r~~ll~~N~~i~~~i----~~~i~~~a~p~a~vIvvtNP 224 (405)
....|+||.++|....... + -...+..|..-...+ .+.+++. +.+.+++++-.
T Consensus 71 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 137 (260)
T PRK08267 71 AAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKAT--PGARVINTSSA 137 (260)
T ss_pred HHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCEEEEeCch
Confidence 2356999998875432111 1 122345555533333 3334432 45667666643
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.086 Score=49.45 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~ 31 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA 31 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.069 Score=50.39 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (405)
.+++.|+||+|.+|++++..|++.|. .+.+ .+++.+.++....++.+.. .++. +..| +.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-----AVAI----ADLNQDGANAVADEINKAG----GKAIGVAMDVTNEDAVNA 73 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEE----EeCChHHHHHHHHHHHhcC----ceEEEEECCCCCHHHHHH
Confidence 46899999999999999999998775 2444 3555555554444444321 1121 1111 111
Q ss_pred -------ccCCCcEEEEeCCcCC-CC-----CCchhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 -------LFEDAEWALLIGAKPR-GP-----GMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~-k~-----g~~r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+...|+||.+++... .+ ..+-...+..|..- .+.+.+.+.+.. ..+.|++++-
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss 144 (262)
T PRK13394 74 GIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGS 144 (262)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcc
Confidence 1234799998876531 11 01112234445443 555566663322 4566666663
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.042 Score=55.51 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..+||+|+||+|.+|..++..|...+.- .+.|..+...++..+ ..+.. . .++.+..-+.+++.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~rsaGk----~~~~~----~--~~~~v~~~~~~~~~~~D 71 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASARSAGK----KVTFE----G--RDYTVEELTEDSFDGVD 71 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccCCCCC----eeeec----C--ceeEEEeCCHHHHcCCC
Confidence 4689999999999999999888875431 133433333333221 11111 1 23344333456789999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+||++.+
T Consensus 72 ~vf~a~p 78 (344)
T PLN02383 72 IALFSAG 78 (344)
T ss_pred EEEECCC
Confidence 9999754
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.052 Score=54.82 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=46.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.+.+||+|+||+|.+|..++..|.....|.- -.|.++..+++.. ....+. . .++.+..-+.++++++
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l~~~aS~~saG----k~~~~~----~--~~l~v~~~~~~~~~~~ 69 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNI---AEVTLLSSKRSAG----KTVQFK----G--REIIIQEAKINSFEGV 69 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccEEEEECcccCC----CCeeeC----C--cceEEEeCCHHHhcCC
Confidence 3457999999999999999998886555431 1244444443222 211111 1 1345544456678999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+|+++.+
T Consensus 70 Divf~a~~ 77 (347)
T PRK06728 70 DIAFFSAG 77 (347)
T ss_pred CEEEECCC
Confidence 99999753
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.028 Score=54.37 Aligned_cols=100 Identities=22% Similarity=0.199 Sum_probs=58.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC-cEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA-EWA 176 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA-DiV 176 (405)
+|.|+||+|+||++++..|++.|. ++.. +++......... .+.. -....++-.....+.+++. |.|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~---~~~~-~~~~d~~~~~~~~~~~~~~~d~v 68 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH-----DVRG----LDRLRDGLDPLL---SGVE-FVVLDLTDRDLVDELAKGVPDAV 68 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC-----eEEE----EeCCCccccccc---cccc-eeeecccchHHHHHHHhcCCCEE
Confidence 499999999999999999998754 2332 233222211110 0000 0000000001223455556 999
Q ss_pred EEeCCcCCCCCCch---hhhHHhhHHHHHHHHHHHHh
Q 015501 177 LLIGAKPRGPGMER---AGLLDINGQIFAEQGKALNA 210 (405)
Q Consensus 177 Ii~~g~~~k~g~~r---~~ll~~N~~i~~~i~~~i~~ 210 (405)
|.+++....++..+ .+....|..-.+.+.+++.+
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 98877544333322 24778999999999998888
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.043 Score=51.76 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=30.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~ 145 (405)
|+|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIA----TGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHH
Confidence 5899999999999999999998764 2443 45555555443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.12 Score=56.66 Aligned_cols=93 Identities=23% Similarity=0.182 Sum_probs=53.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-CC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-ED 172 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~d 172 (405)
.+++||+||| .|.+|..++..|...|. .|.. +|++.... .+.++ . +....+..+.+ ++
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~----~dr~~~~~--~A~~~-----G----v~~~~d~~e~~~~~ 108 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQGH-----TVLA----HSRSDHSL--AARSL-----G----VSFFLDPHDLCERH 108 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHH--HHHHc-----C----CEEeCCHHHHhhcC
Confidence 3467999999 59999999999998763 2433 34442221 22221 1 22233444434 57
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHH-hhcCCCeEEEEeCC
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALN-AVASRNVKVIVVGN 223 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~-~~a~p~a~vIvvtN 223 (405)
||+||++.. ...+.++.+.+. .+.+++++|+.++.
T Consensus 109 aDvViLavP----------------~~~~~~vl~~l~~~~l~~g~iVvDv~S 144 (667)
T PLN02712 109 PDVILLCTS----------------IISTENVLKSLPLQRLKRNTLFVDVLS 144 (667)
T ss_pred CCEEEEcCC----------------HHHHHHHHHhhhhhcCCCCeEEEECCC
Confidence 999999732 123344444443 23346778877764
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.027 Score=55.21 Aligned_cols=99 Identities=16% Similarity=0.056 Sum_probs=57.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (405)
|||.|+||+|+||++++..|+..+- +.. .++.... ...|+.|.. ...+.++ ++|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g~------V~~----~~~~~~~---~~~Dl~d~~-----------~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGN------LIA----LDVHSTD---YCGDFSNPE-----------GVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccCC------EEE----ecccccc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence 5899999999999999999987651 321 2221110 111222211 1123344 589
Q ss_pred EEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 175 iVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+||.+++..... ..+.......|+.....+++.+++. + .++|.+|
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g--~~~v~~S 103 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-G--AWVVHYS 103 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999887643211 1122233467888888899888875 2 3555544
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.19 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|++++..|++.|.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~ 31 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 6899999999999999999998764
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.067 Score=51.93 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|||+ |.+|..++..|...+. + .++. .+ +|++.++++..+.++ ......+..+.+.++|+
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~-~--~elv-~v--~d~~~~~a~~~a~~~---------~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRI-N--AELY-AF--YDRNLEKAENLASKT---------GAKACLSIDELVEDVDL 64 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCC-C--eEEE-EE--ECCCHHHHHHHHHhc---------CCeeECCHHHHhcCCCE
Confidence 579999995 9999999999887541 1 1121 12 466655554333211 12234455555689999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
|+++..
T Consensus 65 Vvi~a~ 70 (265)
T PRK13304 65 VVECAS 70 (265)
T ss_pred EEEcCC
Confidence 999854
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.043 Score=57.17 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++||.|+||+|+||++++..|+..|.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~ 72 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY 72 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 467899999999999999999998764
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.058 Score=47.10 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=67.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceE--EEecCcc-cccCCCc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REV--KIGINPY-ELFEDAE 174 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v--~i~~~~~-eal~dAD 174 (405)
|+|+|| |.||..+|..|.+.+. ++.+ +.+.. .++....+=........ ..+ ......+ +....+|
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~-----~V~l----~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH-----DVTL----VSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC-----EEEE----EESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECc-CHHHHHHHHHHHHCCC-----ceEE----EEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 789995 9999999999998654 4555 34443 33332211000000110 011 1112222 5778999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~ 249 (405)
+||++... .-..+..+.++.+..+++.|+.+-|=.+..-.+. +..+ +.++++..+.
T Consensus 70 ~viv~vKa----------------~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~~~--~~~v~~g~~~ 125 (151)
T PF02558_consen 70 LVIVAVKA----------------YQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EYFP--RPRVLGGVTT 125 (151)
T ss_dssp EEEE-SSG----------------GGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CHST--GSGEEEEEEE
T ss_pred EEEEEecc----------------cchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HHcC--CCcEEEEEEe
Confidence 99998432 1123455557777778889999999776653333 3332 2366555443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.037 Score=47.43 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=43.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|+|++|.+|+.++..+....-+ ++.-. +++...... -.|+.+...-....+.++.+..+.+..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~----~lv~~---v~~~~~~~~--g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF----ELVGA---VDRKPSAKV--GKDVGELAGIGPLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE----EEEEE---EETTTSTTT--TSBCHHHCTSST-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc----EEEEE---EecCCcccc--cchhhhhhCcCCcccccchhHHHhcccCCEE
Confidence 69999997799999999999984321 23221 344431111 1333332211122455667778888899998
Q ss_pred EEe
Q 015501 177 LLI 179 (405)
Q Consensus 177 Ii~ 179 (405)
|-.
T Consensus 72 IDf 74 (124)
T PF01113_consen 72 IDF 74 (124)
T ss_dssp EEE
T ss_pred EEc
Confidence 854
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.025 Score=56.05 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH---HhhhhcCCC-cceEEEecCccccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSLFPL-LREVKIGINPYELF 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~---DL~d~~~~~-~~~v~i~~~~~eal 170 (405)
.+|||+|+|+ |.||..++..|...+. ++.+. .++. .+.... .+....... ...+.+.+ ..++.
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~-----~V~~~----~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF-----DVHFL----LRSD--YEAVRENGLQVDSVHGDFHLPPVQAYR-SAEDM 70 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC-----eEEEE----EeCC--HHHHHhCCeEEEeCCCCeeecCceEEc-chhhc
Confidence 4579999995 9999999999998663 35542 2321 121111 010000000 01122222 33467
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
..+|+||++..... ..+..+.+....++++.|+...|=.+.
T Consensus 71 ~~~D~vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~ 111 (313)
T PRK06249 71 PPCDWVLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGV 111 (313)
T ss_pred CCCCEEEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence 78999998743210 122333344434578888888887754
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.15 Score=47.65 Aligned_cols=47 Identities=26% Similarity=0.284 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+.++|.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-----RVVV----TDRNEEAAERVAAEIL 50 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHh
Confidence 346999999999999999999998764 2443 4566555554444443
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.084 Score=51.77 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC---c-----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---P----- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~---~----- 166 (405)
..+.|.|+||++.||.++|+.|+..|.- +.+ .-+..++++.++.++.... +.. ++.+... +
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~-----l~l----var~~rrl~~v~~~l~~~~-~~~-~v~~~~~Dvs~~~~~~ 79 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAK-----LVL----VARRARRLERVAEELRKLG-SLE-KVLVLQLDVSDEESVK 79 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCc-----eEE----eehhhhhHHHHHHHHHHhC-CcC-ccEEEeCccCCHHHHH
Confidence 3578999999999999999999998862 333 4456677887777777665 222 2222211 1
Q ss_pred ------ccccCCCcEEEEeCCcCCCCCC-c------hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 167 ------YELFEDAEWALLIGAKPRGPGM-E------RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 167 ------~eal~dADiVIi~~g~~~k~g~-~------r~~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
..-+.+.|+.|..||..+ .+. + ....++-| +-+-+...+.|++. .+|.|++++....-+
T Consensus 80 ~~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r--~~GhIVvisSiaG~~ 155 (282)
T KOG1205|consen 80 KFVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKR--NDGHIVVISSIAGKM 155 (282)
T ss_pred HHHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhc--CCCeEEEEecccccc
Confidence 145678999999998776 332 1 22244444 55667777888875 279999988776544
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.058 Score=54.29 Aligned_cols=73 Identities=25% Similarity=0.232 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.+||+|+||+|.+|..++..|.+...- ...|..+..+.+..+. ..+. . .++.+...+..++.++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~----~~~~----~--~~~~v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGET----LRFG----G--KSVTVQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCce----EEEC----C--cceEEEeCchhhccCCC
Confidence 4579999999999999999988875331 1344444344322211 1111 1 13444433345568999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+|+++.+
T Consensus 69 vvf~a~p 75 (336)
T PRK08040 69 LAFFVAG 75 (336)
T ss_pred EEEECCC
Confidence 9999653
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.18 Score=47.14 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|++++..|++.+. .+.+ .+++.+.+.....++.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 48 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-----KVAV----FDLNREAAEKVAADIR 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHHHH
Confidence 46899999999999999999998764 2444 3455455544444443
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.19 Score=51.39 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++||.|+||+|+||++++..|+..+.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~ 85 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY 85 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 3467999999999999999999998764
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.073 Score=52.41 Aligned_cols=114 Identities=10% Similarity=0.017 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--C-------c
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N-------P 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~-------~ 166 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.... . ....++. . .
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-----~Vv~----~~R~~~~~~~~~~~l~~v~-~--~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-----HVIV----PARRPDVAREALAGIDGVE-V--VMLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhhhCe-E--EEccCCCHHHHHHHHHHH
Confidence 46899999999999999999998774 2444 3555555554444432211 0 0111110 0 0
Q ss_pred ccccCCCcEEEEeCCcCCCCCC---ch-hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAKPRGPGM---ER-AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~---~r-~~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+...|++|..+|....+.. +. ...+..|. .+.+.+.+.+++. ..+.||+++-
T Consensus 94 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 156 (315)
T PRK06196 94 LDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG--AGARVVALSS 156 (315)
T ss_pred HhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 1123568999998875322211 11 12233443 3455566666653 3467777764
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.19 Score=46.66 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+++.....++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY-----KVAI----TARDQKELEEAAAELN 51 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-----EEEE----eeCCHHHHHHHHHHHh
Confidence 36899999999999999999998664 2433 3555555554444443
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.04 Score=47.61 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-----------------hhhHHHHHHHhhhhcCCCcce
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----------------LQALEGVAMELEDSLFPLLRE 159 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-----------------~~~l~g~a~DL~d~~~~~~~~ 159 (405)
.||+|+|+ |.+|+.++..|+..|+ + .+.| +|.|.- ..+.+..+..|.... |.. +
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~---~i~l--vD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~~-~ 73 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-G---KITL--VDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PDV-E 73 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-S---EEEE--EESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TTS-E
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-C---ceee--cCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cce-e
Confidence 69999995 9999999999999887 2 2443 333332 224555555555443 322 3
Q ss_pred EEEecC------cccccCCCcEEEEeCC
Q 015501 160 VKIGIN------PYELFEDAEWALLIGA 181 (405)
Q Consensus 160 v~i~~~------~~eal~dADiVIi~~g 181 (405)
++.... ..+.++++|+||.+..
T Consensus 74 v~~~~~~~~~~~~~~~~~~~d~vi~~~d 101 (135)
T PF00899_consen 74 VEAIPEKIDEENIEELLKDYDIVIDCVD 101 (135)
T ss_dssp EEEEESHCSHHHHHHHHHTSSEEEEESS
T ss_pred eeeeecccccccccccccCCCEEEEecC
Confidence 333222 2256679999988743
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.087 Score=52.60 Aligned_cols=131 Identities=14% Similarity=0.190 Sum_probs=77.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc-CCC-CCceEEEeccccchh--hhHHHHHHHhhhhc-C----CCcceEEEec
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV-LGP-DQPIALKLLGSERSL--QALEGVAMELEDSL-F----PLLREVKIGI 164 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~-~~~-d~~i~L~l~~~d~~~--~~l~g~a~DL~d~~-~----~~~~~v~i~~ 164 (405)
+.+.||+||| +|+=|++++..+...=. +.. +..+....++...+. ++|..+...=.+.. | .+..++...+
T Consensus 19 ~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 4578999999 59999999987775421 111 234666555444333 23322211111111 0 1224688888
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--------c-hhHHHHHHHHH
Q 015501 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--------P-CNTNALICLKN 235 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--------P-~d~~t~~~~k~ 235 (405)
|..++++|||++|+. .| -+.+.++++.|..+-.|++..|-.+- | ...++.++.+.
T Consensus 98 dl~ea~~dADilvf~--vP--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~ 161 (372)
T KOG2711|consen 98 DLVEAAKDADILVFV--VP--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRA 161 (372)
T ss_pred hHHHHhccCCEEEEe--CC--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHH
Confidence 999999999999987 44 26667777777777666665554432 2 34555555555
Q ss_pred CCCCCCC
Q 015501 236 APSIPAK 242 (405)
Q Consensus 236 s~~~~~k 242 (405)
. ++|..
T Consensus 162 l-gI~~~ 167 (372)
T KOG2711|consen 162 L-GIPCS 167 (372)
T ss_pred h-CCCce
Confidence 4 45444
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.17 Score=47.54 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ ++++.+.++....++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-----KVVI----ADLNDEAAAAAAEALQ 49 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998764 2443 4566566665555553
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.065 Score=53.78 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..+|..|...|. .|.. +|++.+... +. .....+..+.+++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~G~-----~V~~----~d~~~~~~~----~~----------~~~~~~l~ell~~aDi 201 (330)
T PRK12480 146 NMTVAIIG-TGRIGAATAKIYAGFGA-----TITA----YDAYPNKDL----DF----------LTYKDSVKEAIKDADI 201 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE----EeCChhHhh----hh----------hhccCCHHHHHhcCCE
Confidence 36899999 59999999999987554 2433 354433211 00 0122356788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+ .+..++. .+.+.. .++++++|+++-
T Consensus 202 Vil~l--P~t~---------~t~~li~--~~~l~~-mk~gavlIN~aR 235 (330)
T PRK12480 202 ISLHV--PANK---------ESYHLFD--KAMFDH-VKKGAILVNAAR 235 (330)
T ss_pred EEEeC--CCcH---------HHHHHHh--HHHHhc-CCCCcEEEEcCC
Confidence 99873 2211 1222221 123333 357889999984
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.099 Score=49.48 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||+|||+ |.||..++-.+-.+.. + .++.+ . +|++.+++..... .. .... .++..+.+.+.|++
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~-~--~e~v~-v--~D~~~ek~~~~~~----~~---~~~~--~s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRV-D--FELVA-V--YDRDEEKAKELEA----SV---GRRC--VSDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCc-c--eeEEE-E--ecCCHHHHHHHHh----hc---CCCc--cccHHHHhhcccee
Confidence 58999995 9999999887776542 1 12322 1 5666666543322 11 1111 14556666999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+-+++ .+.+++++.++-+. +.+.+|+-++-=+|
T Consensus 65 VEaAS----------------~~Av~e~~~~~L~~-g~d~iV~SVGALad 97 (255)
T COG1712 65 VEAAS----------------PEAVREYVPKILKA-GIDVIVMSVGALAD 97 (255)
T ss_pred eeeCC----------------HHHHHHHhHHHHhc-CCCEEEEechhccC
Confidence 99877 47889999877775 48899888886554
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.034 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++||.|+||+|.+|+.++..|+..+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~ 42 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF 42 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC
Confidence 468999999999999999999998764
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.047 Score=55.71 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++||+||||.|.+|..++..|...|.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~ 123 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY 123 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC
Confidence 358999999679999999999998764
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.29 Score=46.29 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF----- 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal----- 170 (405)
.++|.|+||+|.+|++++..|+..|. .+.+ .+++.+.++....++.... ....-+.....+.+.+
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-----RVVL----SARKAEELEEAAAHLEALG-IDALWIAADVADEADIERLAE 81 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHH
Confidence 47899999999999999999998764 2433 3455555554444333211 0000011111122222
Q ss_pred ------CCCcEEEEeCCcCCCCCC------chhhhHHhhHHHHHHHHHHHHhh---cCCCeEEEEeCC
Q 015501 171 ------EDAEWALLIGAKPRGPGM------ERAGLLDINGQIFAEQGKALNAV---ASRNVKVIVVGN 223 (405)
Q Consensus 171 ------~dADiVIi~~g~~~k~g~------~r~~ll~~N~~i~~~i~~~i~~~---a~p~a~vIvvtN 223 (405)
...|.||..+|....... .-...+..|..-...+.+.+.++ .++.+.+++++.
T Consensus 82 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 82 ETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 467999998765321111 11123456655555555544332 123467777765
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.045 Score=57.85 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--- 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--- 171 (405)
.+.+|++|| .|.+|+.++..|+..|. ++.+ .|++.++.+..+..... . . ...+....+..+.++
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~-----~V~V----~NRt~~k~~~l~~~~~~-~-G-a~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKGF-----PISV----YNRTTSKVDETVERAKK-E-G-NLPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCCC-----eEEE----ECCCHHHHHHHHHhhhh-c-C-CcccccCCCHHHHHhcCC
Confidence 467899999 79999999999999875 3554 56776666544321111 0 0 011222233444444
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+|+||++-.. .+.+.++...+-....++.++|..||-
T Consensus 72 ~~dvIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 72 KPRSVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CCCEEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 49999987321 233344433344433467788888873
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.043 Score=52.76 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=57.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC--CcE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AEW 175 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--ADi 175 (405)
||.|+||+|++|++++..|+..|. ++.+ +++. ..|+.+.. ...+++++ .|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-----~v~~----~~r~-------~~d~~~~~-----------~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-----VVVA----LTSS-------QLDLTDPE-----------ALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEE----eCCc-------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence 689999999999999999998753 2332 2221 11222111 11233343 499
Q ss_pred EEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||.+++...... .........|......+++.+.+. + ..+|.++
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~S 99 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-G--ARLVHIS 99 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEe
Confidence 998876532211 123345677888888888888775 2 2555555
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.065 Score=49.16 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cC---ccccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYELF 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~---~~eal 170 (405)
.+++.|+||+|.+|..++..|+..+. .+.+ .+++.++++..+.++.+.. .. .+... .+ ..+++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-----~V~l----~~R~~~~~~~l~~~l~~~~-~~--~~~~~~~~~~~~~~~~~ 95 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA-----RVVL----VGRDLERAQKAADSLRARF-GE--GVGAVETSDDAARAAAI 95 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhhc-CC--cEEEeeCCCHHHHHHHH
Confidence 47999999889999999999987652 2444 4566677776665554221 11 22221 11 24778
Q ss_pred CCCcEEEEeCC
Q 015501 171 EDAEWALLIGA 181 (405)
Q Consensus 171 ~dADiVIi~~g 181 (405)
+++|+||.+..
T Consensus 96 ~~~diVi~at~ 106 (194)
T cd01078 96 KGADVVFAAGA 106 (194)
T ss_pred hcCCEEEECCC
Confidence 99999887643
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.069 Score=51.40 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++|.|+||+|.||++++..|+..|.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~ 29 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH 29 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC
Confidence 356899999999999999999998764
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.089 Score=52.83 Aligned_cols=72 Identities=28% Similarity=0.325 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|+||+|.+|..++..|...+.- .+.|..+-.+... +...++. . .++.+......+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp----~~~l~~l~s~~~~----g~~l~~~----g--~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFP----VDKLRLLASARSA----GKELSFK----G--KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC----cceEEEEEccccC----CCeeeeC----C--ceeEEeeCCHHHHcCCCE
Confidence 579999999999999999999875431 1233332223221 1111111 1 233443223356789999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
||++.+
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 998754
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.061 Score=47.00 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.++|+|+|+ |.+|..++..|...+. ..+.+ .|++.++++..+.++.... ... ...+..+.++++|
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~----~~v~v----~~r~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~D 83 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGA----AKIVI----VNRTLEKAKALAERFGELG----IAI-AYLDLEELLAEAD 83 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC----CEEEE----EcCCHHHHHHHHHHHhhcc----cce-eecchhhccccCC
Confidence 3579999995 9999999999988652 12444 4666666665555443210 011 1234556689999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+||.+..
T Consensus 84 vvi~~~~ 90 (155)
T cd01065 84 LIINTTP 90 (155)
T ss_pred EEEeCcC
Confidence 9998744
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.14 Score=56.70 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=56.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.||+||| .|.+|..++..|...+.. ..|.. +|++.++++. +.++ .. ......+..+++.++|+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~---~~V~~----~d~~~~~~~~-a~~~-----g~--~~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLA---REVVA----VDRRAKSLEL-AVSL-----GV--IDRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCC---CEEEE----EECChhHHHH-HHHC-----CC--CCcccCCHHHHhcCCCEE
Confidence 6899999 599999999999987741 12433 4666555442 2221 11 001223455678899999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|++... +.+.++.+.+..+.+++.+|+.++
T Consensus 68 ilavp~----------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 68 VLAVPV----------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred EECCCH----------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 987431 234555555555544555655554
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.048 Score=52.75 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=60.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEec--CcccccCC--
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELFED-- 172 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~--~~~eal~d-- 172 (405)
||.|+||+|++|++++..|+..+.- ..+.+ ++........+ ...++.... ... ....++. ...+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~---~~v~~--~~~~~~~~~~~-~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD---AEVIV--LDKLTYAGNLE-NLADLEDNP-RYRFVKGDIGDRELVSRLFTEHQ 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC---CEEEE--ecCCCcchhhh-hhhhhccCC-CcEEEEcCCcCHHHHHHHHhhcC
Confidence 5899999999999999999876420 12322 22111001111 111121100 000 0001111 12344555
Q ss_pred CcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 173 ADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+|+||.+++... .....-...+..|......+++.+.+.. .+..++.++
T Consensus 74 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~i~~S 124 (317)
T TIGR01181 74 PDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYW-HEFRFHHIS 124 (317)
T ss_pred CCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEee
Confidence 899998876421 1111223456778888888888888752 455666655
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.054 Score=54.22 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=52.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+...+++||| +|.+|...+..+....-+ ..|.+ .|++.++++..+.++.+. ..++....+..+++++|
T Consensus 126 ~~~~~lgiiG-~G~qA~~~l~al~~~~~~---~~v~V----~~r~~~~~~~~~~~~~~~----g~~v~~~~~~~eav~~a 193 (325)
T TIGR02371 126 KDSSVLGIIG-AGRQAWTQLEALSRVFDL---EEVSV----YCRTPSTREKFALRASDY----EVPVRAATDPREAVEGC 193 (325)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhcCCC---CEEEE----ECCCHHHHHHHHHHHHhh----CCcEEEeCCHHHHhccC
Confidence 3468999999 599999877766553222 24554 577778888777766532 12456667888999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+++
T Consensus 194 DiVita 199 (325)
T TIGR02371 194 DILVTT 199 (325)
T ss_pred CEEEEe
Confidence 999975
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.1 Score=49.97 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=77.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---------Ccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~~ 167 (405)
+-+.|.||++.+|...|..|++.|. ++.| ..+..++|+..+.++.+.. .+...+.++. ...
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-----~vvl----~aRR~drL~~la~~~~~~~-~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-----KVVL----AARREERLEALADEIGAGA-ALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-----eEEE----EeccHHHHHHHHHhhccCc-eEEEeeccCCHHHHHHHHHHHH
Confidence 5678999999999999999999886 3555 6888899999999887411 1111222321 134
Q ss_pred cccCCCcEEEEeCCcCCCCCC------chhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ELFEDAEWALLIGAKPRGPGM------ERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~------~r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.-+.... +-..+++.|+.- ++.+.+.+.+- ..|.||+++--
T Consensus 77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r--~~G~IiN~~Si 141 (246)
T COG4221 77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER--KSGHIINLGSI 141 (246)
T ss_pred HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CCceEEEeccc
Confidence 677889999998875432111 122356777653 44555666663 46788888743
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.18 Score=48.03 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~ 55 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA-----DVLI----AARTESQLDEVAEQIR 55 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 2443 3555555555555553
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.31 Score=46.48 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=32.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
++|.|+||+|.+|++++..|+..|. .+.+ .+++.+.++....++.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 45 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-----RLAL----ADVNEEGGEETLKLLR 45 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 4789999999999999999998775 2444 3455555555544443
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.021 Score=54.18 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=42.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC----ccc-cc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN----PYE-LF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~----~~e-al 170 (405)
|+++|+|| |.+|+++|..|...|. .+.+ +|.++++++....|-.+. .+... .. ..+ .+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-----~Vv~----Id~d~~~~~~~~~~~~~~------~~v~gd~t~~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-----NVVL----IDRDEERVEEFLADELDT------HVVIGDATDEDVLEEAGI 64 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC-----ceEE----EEcCHHHHHHHhhhhcce------EEEEecCCCHHHHHhcCC
Confidence 68999995 9999999999999875 3555 566667665433221111 12221 11 223 37
Q ss_pred CCCcEEEEe
Q 015501 171 EDAEWALLI 179 (405)
Q Consensus 171 ~dADiVIi~ 179 (405)
.++|.++.+
T Consensus 65 ~~aD~vva~ 73 (225)
T COG0569 65 DDADAVVAA 73 (225)
T ss_pred CcCCEEEEe
Confidence 889998875
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.42 Score=45.69 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc---ceEEEecCccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL---REVKIGINPYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~---~~v~i~~~~~e---- 168 (405)
.+.+.|+||+|.||.+++..|++.|. .+.+ .+++.+.++..+.++.... +.. ....++ +.+
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~--~~~~i~~ 75 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-----DVIL----LSRNEENLKKAREKIKSES-NVDVSYIVADLT--KREDLER 75 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhc-CCceEEEEecCC--CHHHHHH
Confidence 45789999999999999999999875 2444 3555566665555554321 110 011111 111
Q ss_pred ------ccCCCcEEEEeCCcCCCC---CCchhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ------LFEDAEWALLIGAKPRGP---GMERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ------al~dADiVIi~~g~~~k~---g~~r~~---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.+... ..+..+ .+..| ..+.+.+.+.+++. ..+.||+++-.
T Consensus 76 ~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~--~~g~Ii~isS~ 145 (263)
T PRK08339 76 TVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK--GFGRIIYSTSV 145 (263)
T ss_pred HHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCc
Confidence 123579998887754311 112111 23334 33466666777663 45777777654
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.22 Score=46.62 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.+|.+++..|++.+. .+.+ .+++.+.++....++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-----~vi~----~~r~~~~~~~~~~~~ 50 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA-----SVVV----ADINAEGAERVAKQI 50 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2443 355544444444334
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.046 Score=56.56 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..+|+|+|+ |.+|..++..|...|.. .+.+ .+++.++++..+.++.. ......+..+++.++|+
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~rs~~ra~~la~~~g~-------~~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVG----KILI----ANRTYERAEDLAKELGG-------EAVKFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHcCC-------eEeeHHHHHHHHhhCCE
Confidence 479999995 99999999999887642 2544 56666666655544321 11111345678899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
||.+.+.+. |-.+ .+.+ +.+..--....+++-+++|-|+=
T Consensus 244 Vi~aT~s~~-~ii~--------~e~l----~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 244 VISSTGAPH-PIVS--------KEDV----ERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEECCCCCC-ceEc--------HHHH----HHHHhcCCCCeEEEEeCCCCCCC
Confidence 998754332 1111 1112 11111101246899999997754
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.3 Score=45.54 Aligned_cols=47 Identities=32% Similarity=0.379 Sum_probs=33.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+|+++.|+||+|.+|..++..|++.|. .|.+ .+++.+.++....++
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGW-----DLAL----VARSQDALEALAAEL 50 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 3567899999999999999999998775 2443 355555544444333
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.3 Score=45.51 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||+|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv 45 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI 45 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.06 Score=51.32 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D 148 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~ 49 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-----RVAI----VDIDADNGAAVAAS 49 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHH
Confidence 46899999999999999999998775 2444 35555555544433
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.27 Score=46.26 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+.++|.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-----DVVL----AARTAERLDEVAAEID 50 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 346899999999999999999998875 2443 3555555554444443
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.22 Score=46.36 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=25.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+.++|.|+||+|.+|++++..|+..|.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~ 30 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGF 30 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 34457899999999999999999998875
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.08 Score=54.23 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++||+|+||+|.+|..++..|...+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~ 63 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD 63 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC
Confidence 457999999999999999999888743
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.085 Score=52.85 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
..++|+|||+ |..|...+..+.. .++ +.+.+ .+++.++++..+.++.+.. + .++....+..+++.+|
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~----~~V~v----~~R~~~~a~~l~~~~~~~~-g--~~v~~~~d~~~al~~a 198 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPI----REVRV----WARDAAKAEAYAADLRAEL-G--IPVTVARDVHEAVAGA 198 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC----CEEEE----EcCCHHHHHHHHHHHhhcc-C--ceEEEeCCHHHHHccC
Confidence 3579999995 9999988887775 332 23555 5778888888887765321 1 2344556667889999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 199 DiVi~a 204 (330)
T PRK08291 199 DIIVTT 204 (330)
T ss_pred CEEEEe
Confidence 999875
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.4 Score=45.15 Aligned_cols=113 Identities=18% Similarity=0.063 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----- 167 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+.. .++.+. .| +.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-----KVVV----GARRQAELDQLVAEIRAEG----GEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 46899999999999999999998775 2444 3555566665555554321 111111 11 11
Q ss_pred ------cccCCCcEEEEeCCcC--CCCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ------ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~--~k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+...|++|..+|.. ..+- .+. ...+..|.. ..+.+.+.+.+. ..+.||+++.
T Consensus 73 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS 143 (254)
T PRK07478 73 LVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTST 143 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1233679999887752 1221 111 123455543 344455555553 3566776664
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.39 Score=45.87 Aligned_cols=114 Identities=15% Similarity=-0.004 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---------Cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~ 166 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.... .....++. ..
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-----RVAI----GDLDEALAKETAAELGLVV---GGPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhccce---EEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2443 3556566654444332111 00111110 01
Q ss_pred ccccCCCcEEEEeCCcCCC-CCC--c---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAKPRG-PGM--E---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k-~g~--~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+.+.|++|..+|.... +-. + -...+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 73 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS 137 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR--GRGHVVNVAS 137 (273)
T ss_pred HHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEcC
Confidence 1223578999998775321 111 1 1123445543 344455555553 4567777774
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.16 Score=47.12 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++|.|+||+|.+|..++..|++.|. .+.+ ++++.+.++....++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-----KVVI----YDSNEEAAEALAAELR 50 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChhHHHHHHHHHH
Confidence 46899999999999999999998765 2433 4555555554444443
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.068 Score=53.43 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=44.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~dA 173 (405)
++||+|+||+|.||+.++..|.+... .- ..+.++-+.++..+ ...++..-. +.+-. .+..+++++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~---~~~~~~AS~rSaG~---~~~~f~~~~------~~v~~~~~~~~~~~~~ 67 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PF---EELVLLASARSAGK---KYIEFGGKS------IGVPEDAADEFVFSDV 67 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-Cc---ceEEEEecccccCC---ccccccCcc------ccCccccccccccccC
Confidence 47999999999999999999998633 11 12334334443221 113322111 11111 356777899
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+|++++|
T Consensus 68 Divf~~ag 75 (334)
T COG0136 68 DIVFFAAG 75 (334)
T ss_pred CEEEEeCc
Confidence 99999875
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.026 Score=52.25 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=62.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH-HhhhhcCCCcceEEEe--cCcccccCCC--
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-ELEDSLFPLLREVKIG--INPYELFEDA-- 173 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~-DL~d~~~~~~~~v~i~--~~~~eal~dA-- 173 (405)
|.|+||+|++|++++..|+..+. .+ +.+.. ....+... ... ++.... ..+. ....+.+++.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-----~v-~~~~~-~~~~~~~~-~~~~~~~~~~------~dl~~~~~~~~~~~~~~~ 66 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-----EV-IVLSR-SSNSESFE-EKKLNVEFVI------GDLTDKEQLEKLLEKANI 66 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-----EE-EEEES-CSTGGHHH-HHHTTEEEEE------SETTSHHHHHHHHHHHTE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-----cc-ccccc-cccccccc-cccceEEEEE------eeccccccccccccccCc
Confidence 78999999999999999999875 12 22221 11111111 110 000000 0000 1123455555
Q ss_pred cEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 174 EWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 174 DiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|.||.+++... .....-.+....|......+.+.+.+.. . .++|..+.
T Consensus 67 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~sS 116 (236)
T PF01370_consen 67 DVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAG-V-KRFIFLSS 116 (236)
T ss_dssp SEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-T-SEEEEEEE
T ss_pred eEEEEeecccccccccccccccccccccccccccccccccc-c-cccccccc
Confidence 99999877542 0112344667889999999999999873 3 46666554
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.14 Score=48.48 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv 45 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV 45 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999886
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.3 Score=46.10 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|..++..|+..|. .|.+ .+++++.++....++.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-----EVIL----NGRDPAKLAAAAESLK 55 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 2544 4555555554444443
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.33 Score=45.73 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++.|+||+|.+|.+++..|++.|. .+.+ ++++.+.++....++.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-----KVAI----VDYNEETAQAAADKLS 47 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 4789999999999999999998764 2443 3555555555555554
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.082 Score=52.66 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-----Ee--cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--~~~~e 168 (405)
|+||.|+||+|+||++++..|+..+. ..+.+ .++.... +....+.+.. .. .++. ++ .+..+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~----~~v~~----~~~~~~~--~~~~~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 68 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS----DAVVV----VDKLTYA--GNLMSLAPVA-QS-ERFAFEKVDICDRAELAR 68 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC----CEEEE----EecCccc--cchhhhhhcc-cC-CceEEEECCCcChHHHHH
Confidence 57999999999999999999998764 12322 2221110 0001111100 00 0111 11 11123
Q ss_pred ccC--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 169 al~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
.++ +.|+||.+++..... ..........|..-...+.+.+.++
T Consensus 69 ~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~ 115 (355)
T PRK10217 69 VFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY 115 (355)
T ss_pred HHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHh
Confidence 344 389999988753211 1123345677887777788777653
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.093 Score=55.17 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=60.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc---ccCCCc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE---LFEDAE 174 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e---al~dAD 174 (405)
+|+||| .|.+|.++|..|+..|. ++.+ .|++.++++....+.... ..+....+..+ .++++|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-----~V~v----~drt~~~~~~l~~~~~~g-----~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-----TVSV----YNRTPEKTDEFLAEHAKG-----KKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-----eEEE----EeCCHHHHHHHHhhccCC-----CCceecCCHHHHHhhcCCCC
Confidence 489999 69999999999999875 3544 567767665443211100 01222222222 445789
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
+||++... .+.+.++...+..+..++.+||..+| |.++.-
T Consensus 66 vIil~v~~---------------~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~ 107 (467)
T TIGR00873 66 KIMLMVKA---------------GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTER 107 (467)
T ss_pred EEEEECCC---------------cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHH
Confidence 88876321 13344444555555446778888987 556543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.44 Score=44.54 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=63.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCC-Cc--ceEEEecC--------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFP-LL--REVKIGIN-------- 165 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~-~~--~~v~i~~~-------- 165 (405)
||.|+||+|.+|.+++..|+..|. .+.+ .+++ .+.++....++.+.... .. ....++..
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-----KVFL----TDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLA 71 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHH
Confidence 589999999999999999998774 2443 2333 34455444444322100 00 01111110
Q ss_pred -cccccCCCcEEEEeCCcCCCCCC---c---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 -PYELFEDAEWALLIGAKPRGPGM---E---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 -~~eal~dADiVIi~~g~~~k~g~---~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+...|+||..+|....... + -...+..|.. ..+.+.+.+++. ..+.|++++..
T Consensus 72 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~ss~ 139 (251)
T PRK07069 72 QAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS--QPASIVNISSV 139 (251)
T ss_pred HHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEecCh
Confidence 01224567999988775321111 1 1233556655 556666777664 34567776643
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.081 Score=52.61 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+||.|+||+|+||++++..|+..|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~ 25 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY 25 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998764
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.53 Score=43.77 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA 31 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 47899999999999999999998764
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.091 Score=52.06 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=54.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
....+++||| +|..|...+..++.-.-+ .+|.+ .+++.++++..+.++.+.. ..++.+..+..+++++|
T Consensus 115 ~da~~l~iiG-aG~QA~~~~~a~~~v~~i---~~v~v----~~r~~~~a~~f~~~~~~~~---~~~v~~~~~~~eav~~a 183 (301)
T PRK06407 115 KNVENFTIIG-SGFQAETQLEGMASVYNP---KRIRV----YSRNFDHARAFAERFSKEF---GVDIRPVDNAEAALRDA 183 (301)
T ss_pred cCCcEEEEEC-CcHHHHHHHHHHHhcCCC---CEEEE----ECCCHHHHHHHHHHHHHhc---CCcEEEeCCHHHHHhcC
Confidence 3468999999 599999877777763222 34555 5788888888888776532 22566667789999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 184 DIV~ta 189 (301)
T PRK06407 184 DTITSI 189 (301)
T ss_pred CEEEEe
Confidence 999864
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.1 Score=49.05 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~ 145 (405)
|.++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++..
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~ 41 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGW-----QVIA----CGRNQSVLDEL 41 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHH
Confidence 46799999999999999999998764 2444 45555555433
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.1 Score=51.96 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
...+|+||| +|.+|..++..+.. .+. ..|.+ .+++.++++..+.++.+. . .++....+..+++++|
T Consensus 124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~----~~V~V----~~Rs~~~a~~~a~~~~~~--g--~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVG-TGRLASLLALAHASVRPI----KQVRV----WGRDPAKAEALAAELRAQ--G--FDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEEC-CcHHHHHHHHHHHhcCCC----CEEEE----EcCCHHHHHHHHHHHHhc--C--CceEEeCCHHHHHhcC
Confidence 468999999 59999999886665 332 23554 577888888888776532 1 1345556677899999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 191 DIVi~a 196 (314)
T PRK06141 191 DIISCA 196 (314)
T ss_pred CEEEEe
Confidence 999764
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.13 Score=51.36 Aligned_cols=57 Identities=7% Similarity=-0.036 Sum_probs=39.1
Q ss_pred ceEEEecC--cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 015501 158 REVKIGIN--PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (405)
Q Consensus 158 ~~v~i~~~--~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (405)
.+++++++ .++++++||+||.+.. ++.++-+.+-..+.++++|++++ .||-......
T Consensus 63 ~~i~~~~~~~~~~a~~~aD~ViEav~--------------E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~ 121 (314)
T PRK08269 63 ARIAVVARDGAADALADADLVFEAVP--------------EVLDAKREALRWLGRHVDADAII--ASTTSTFLVT 121 (314)
T ss_pred hCeEeecCcchHHHhccCCEEEECCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHH
Confidence 35666654 5688999999998732 24566666777788888777777 7776544333
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.23 Score=46.81 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-----~vvl----~~r~~~~~~~~~~~l~~ 55 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-----EIII----NDITAERAELAVAKLRQ 55 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHHHh
Confidence 356899999999999999999998764 2444 45555666655555543
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.094 Score=53.09 Aligned_cols=118 Identities=11% Similarity=0.069 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-CC-CcceEEE-ec---C---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP-LLREVKI-GI---N--- 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~~-~~~~v~i-~~---~--- 165 (405)
++++|.|+||+|++|++++..|+..|. .+.+. .++.+.+... .++.... .. ....+.+ .. +
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-----~V~~~----~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-----SVRIA----VDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHH
Confidence 367999999999999999999998775 24331 1222222211 1221100 00 0001111 11 1
Q ss_pred cccccCCCcEEEEeCCcCCCCCC--chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 166 PYELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~--~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
..++++++|.|+.+++.....+. ....+...|..-...+.+.+.+..+-. ++|.++-
T Consensus 122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS 180 (367)
T PLN02686 122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSS 180 (367)
T ss_pred HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEecc
Confidence 23567889999877654211121 112344567777788888777642122 4444443
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.15 Score=52.57 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc----cccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELF 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~----~eal 170 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++... .+..... ..+.....+ .+.+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-----~Vi~----l~r~~~~l~~~~---~~~~~~v-~~v~~Dvsd~~~v~~~l 243 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-----KVVA----LTSNSDKITLEI---NGEDLPV-KTLHWQVGQEAALAELL 243 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHH---hhcCCCe-EEEEeeCCCHHHHHHHh
Confidence 357899999999999999999998764 2433 344444433211 1110010 011111112 2346
Q ss_pred CCCcEEEEeCCcCCCCCCch---hhhHHhhHH----HHHHHHHHHHh
Q 015501 171 EDAEWALLIGAKPRGPGMER---AGLLDINGQ----IFAEQGKALNA 210 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r---~~ll~~N~~----i~~~i~~~i~~ 210 (405)
.+.|++|..+|.......+. ...++.|.. +++.+.+.+++
T Consensus 244 ~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 244 EKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred CCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999998776532222222 233455544 45555555654
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.093 Score=52.46 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+++||| +|.+|...+..++...-+ ..|.+ .+++.++++..+.++.+.. + .++....+..+++.+||
T Consensus 126 ~~~~v~iiG-aG~~a~~~~~al~~~~~~---~~v~v----~~r~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~aD 194 (325)
T PRK08618 126 DAKTLCLIG-TGGQAKGQLEAVLAVRDI---ERVRV----YSRTFEKAYAFAQEIQSKF-N--TEIYVVNSADEAIEEAD 194 (325)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCc---cEEEE----ECCCHHHHHHHHHHHHHhc-C--CcEEEeCCHHHHHhcCC
Confidence 368999999 599998877766542212 23554 5777788887777665421 2 23444556678899999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 195 iVi~a 199 (325)
T PRK08618 195 IIVTV 199 (325)
T ss_pred EEEEc
Confidence 99875
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.41 Score=47.83 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH-HHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeCCcCCCC
Q 015501 108 IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGP 186 (405)
Q Consensus 108 VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~ 186 (405)
-|+.+|..|+..|. ++.+ .|++.++++ ..+..+.+.. .....+..++.++||+||++-.
T Consensus 31 gGspMArnLlkAGh-----eV~V----~Drnrsa~e~e~~e~LaeaG------A~~AaS~aEAAa~ADVVIL~LP----- 90 (341)
T TIGR01724 31 GGSRMAIEFAMAGH-----DVVL----AEPNREFMSDDLWKKVEDAG------VKVVSDDKEAAKHGEIHVLFTP----- 90 (341)
T ss_pred CHHHHHHHHHHCCC-----EEEE----EeCChhhhhhhhhHHHHHCC------CeecCCHHHHHhCCCEEEEecC-----
Confidence 37788998888765 3444 455545442 2223343321 2344567899999999998732
Q ss_pred CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHHHHHH
Q 015501 187 GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALIC 232 (405)
Q Consensus 187 g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t~~~ 232 (405)
|.+..++++..+.....++.+||..| -+.+.+-+++
T Consensus 91 ----------d~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~ 127 (341)
T TIGR01724 91 ----------FGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSL 127 (341)
T ss_pred ----------CHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHH
Confidence 12334444444444443455555554 3444444544
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.089 Score=53.35 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=62.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFED 172 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~d 172 (405)
.++.++.|+||+|++|.+++..|.+.+.. ..++++|..........+-.++......+ ..++.-......++.+
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~ 76 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQG 76 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccC
Confidence 45789999999999999999999998752 33444443332222322222210000000 0111112346789999
Q ss_pred CcEEEEeCC--cCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 173 AEWALLIGA--KPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 173 ADiVIi~~g--~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
+ .|++.+. .++..-..|......|.+--+.+.+.+.+.
T Consensus 77 ~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~ 116 (361)
T KOG1430|consen 77 A-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL 116 (361)
T ss_pred c-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh
Confidence 9 6665432 222221235555567777767777777774
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.29 Score=46.43 Aligned_cols=46 Identities=33% Similarity=0.387 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
+..+|.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 49 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-----RLLL----VGRNAEKLEALAARL 49 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHH
Confidence 346899999999999999999998774 2444 355555555444333
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.33 Score=45.65 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-----~v~~----~~r~~~~~~~~~~~l 48 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-----IVIA----ADIDKEALNELLESL 48 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EecChHHHHHHHHHH
Confidence 46899999999999999999998775 2443 355556665555555
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.59 Score=43.87 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|.+++..|++.|.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~ 27 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH 27 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.55 Score=44.92 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=32.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++.|+||+|.+|..++..|+..|. .+.+ ++++.+.++....++.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-----~vv~----~~r~~~~~~~~~~~~~ 45 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-----ELFL----TDRDADGLAQTVADAR 45 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 3799999999999999999998764 2443 3555555555555544
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.065 Score=50.70 Aligned_cols=26 Identities=27% Similarity=-0.005 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.||.+++..|+..+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~ 35 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW 35 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC
Confidence 46899999999999999999998764
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.3 Score=48.15 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
+.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l 50 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-----HVIM----ACRNLKKAEAAAQEL 50 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHh
Confidence 356899999999999999999998774 2444 355556665555444
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.15 Score=51.25 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.+||+||| .|.+|.+++..|...|+ .+.+. ++...+....+.+ + . +.. .+..+++++||
T Consensus 16 ~gktIgIIG-~GsmG~AlA~~L~~sG~-----~Vvv~----~r~~~~s~~~A~~--~---G----~~~-~s~~eaa~~AD 75 (330)
T PRK05479 16 KGKKVAIIG-YGSQGHAHALNLRDSGV-----DVVVG----LREGSKSWKKAEA--D---G----FEV-LTVAEAAKWAD 75 (330)
T ss_pred CCCEEEEEe-eHHHHHHHHHHHHHCCC-----EEEEE----ECCchhhHHHHHH--C---C----Cee-CCHHHHHhcCC
Confidence 457999999 59999999999998775 24331 2221222222221 1 1 112 25678999999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+|+++.
T Consensus 76 VVvLaV 81 (330)
T PRK05479 76 VIMILL 81 (330)
T ss_pred EEEEcC
Confidence 999873
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.67 Score=43.12 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|++.|. .|.+ ++++.+++.....++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-----EVIV----VDICGDDAAATAELVE 51 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998764 2433 4555555554444443
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.64 Score=43.14 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++|.|+||+|.+|..++..|++.+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~ 30 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA 30 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.42 Score=45.22 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++|.|+||+|.+|.+++..|+..+. .+.+ .+++.+.++....++.
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~-----~Vi~----~~r~~~~~~~~~~~l~ 46 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-----QLVL----AARNETRLASLAQELA 46 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 35799999999999999999998764 2443 3555555554444443
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.066 Score=52.38 Aligned_cols=75 Identities=24% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..++|+|+||+|+||||++-.|+..+. ..|+++.+- .+....+++.......++..-.....-+..+|
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh----~VIa~Dn~f--------tg~k~n~~~~~~~~~fel~~hdv~~pl~~evD 93 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH----EVIALDNYF--------TGRKENLEHWIGHPNFELIRHDVVEPLLKEVD 93 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC----eEEEEeccc--------ccchhhcchhccCcceeEEEeechhHHHHHhh
Confidence 358999999999999999999998773 245553322 12223334433122223333333445778899
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
-|+..|.
T Consensus 94 ~IyhLAa 100 (350)
T KOG1429|consen 94 QIYHLAA 100 (350)
T ss_pred hhhhhcc
Confidence 9887543
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.78 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
+++||+||| +|++|..++..+...
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~ 26 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRS 26 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcC
Confidence 458999999 699999988888763
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.73 Score=43.37 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=35.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+.++|.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-----HVLV----NGRNAATLEAAVAALR 56 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 3568999999999999999999998775 2444 4555566665555554
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.12 Score=49.56 Aligned_cols=112 Identities=14% Similarity=0.057 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--Ccccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYEL---- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~ea---- 169 (405)
.++|.|+||+|.+|.+++..|++.|. .+.+ .+++.++++....+ .. .. ....++. +..+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~l~~~~~~---~~-~~-~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-----TVYG----AARRVDKMEDLASL---GV-HP-LSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHhC---CC-eE-EEeeCCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2433 35555554432210 01 00 0111211 01111
Q ss_pred ---cCCCcEEEEeCCcCC-CCC--C---chhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 ---FEDAEWALLIGAKPR-GPG--M---ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 ---l~dADiVIi~~g~~~-k~g--~---~r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+.|++|..+|... .+- . +-...+..|.. .++.+.+.+++. ..+.||+++.
T Consensus 69 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~--~~g~iv~isS 133 (273)
T PRK06182 69 IAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ--RSGRIINISS 133 (273)
T ss_pred HHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 237899999877532 111 1 11223445543 355555666653 3456777764
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.45 Score=46.48 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.++|.|+||+|.||.+++..|+..|. .+.+ ..++.++++....++.... + ..++.+. .| +.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-----~vi~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~d~~~v~ 83 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-----HVVL----AVRNLDKGKAAAARITAAT-P-GADVTLQELDLTSLASVR 83 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC-C-CCceEEEECCCCCHHHHH
Confidence 346899999999999999999998774 2443 3445455544444443211 1 0112111 11 111
Q ss_pred --------ccCCCcEEEEeCCcCCCCC-Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 --------LFEDAEWALLIGAKPRGPG-MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~k~g-~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|....+. .+. ...+..|.. +...+.+.+++. ..+.||+++-.
T Consensus 84 ~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS~ 153 (306)
T PRK06197 84 AAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV--PGSRVVTVSSG 153 (306)
T ss_pred HHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC--CCCEEEEECCH
Confidence 2346899999876422111 111 122344433 355666666653 34677777643
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.17 Score=50.38 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCce-EEEecccc-chhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSE-RSLQALEGVAMELEDSLFPL-LREVKIGINPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i-~L~l~~~d-~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~d 172 (405)
.++|+| ||+|.||..+...|-++.+ ++ .|+++.+. .. .|... .+ ..++.+..-..+++++
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f-----pv~~l~l~~s~~~s----~gk~i-------~f~g~~~~V~~l~~~~f~~ 65 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL-----EIEQISIVEIEPFG----EEQGI-------RFNNKAVEQIAPEEVEWAD 65 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC-----chhheeeccccccc----CCCEE-------EECCEEEEEEECCccCccc
Confidence 368999 9999999999998888765 23 34444332 11 11111 12 1356666556779999
Q ss_pred CcEEEEeCC
Q 015501 173 AEWALLIGA 181 (405)
Q Consensus 173 ADiVIi~~g 181 (405)
.|++++ +|
T Consensus 66 vDia~f-ag 73 (322)
T PRK06901 66 FNYVFF-AG 73 (322)
T ss_pred CCEEEE-cC
Confidence 999999 54
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.56 Score=46.82 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL------ 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea------ 169 (405)
.++|.|+||+|.||..++..|+..|. .+.+ .+++.++++....++....... .-+..-..+.+.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-----~Vvl----~~R~~~~l~~~~~~l~~~g~~~-~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-----KVVL----LARGEEGLEALAAEIRAAGGEA-LAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcCCcE-EEEEecCCCHHHHHHHHH
Confidence 46899999999999999999998774 2444 4566666666665554321000 001111112222
Q ss_pred -----cCCCcEEEEeCCcCC-CC-C-Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 -----FEDAEWALLIGAKPR-GP-G-MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 -----l~dADiVIi~~g~~~-k~-g-~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+...|++|..+|... .+ . .+.. ..+..| ....+.+.+.+.+. ..+.||+++-
T Consensus 78 ~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~--~~g~iV~isS 144 (334)
T PRK07109 78 RAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR--DRGAIIQVGS 144 (334)
T ss_pred HHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEeCC
Confidence 346799998876432 11 1 1111 122333 33445555666553 3467777664
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.12 Score=53.56 Aligned_cols=106 Identities=21% Similarity=0.241 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..+|+|+|| |.+|..++..|...|. ..+.+ .+++.+++...+.++.. .+....+..+.+.++|
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~----~~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGV----RKITV----ANRTLERAEELAEEFGG-------EAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCC----CeEEE----EeCCHHHHHHHHHHcCC-------cEeeHHHHHHHhccCC
Confidence 3579999995 9999999999987664 13544 56666666655554321 1111134557788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
+||.+.+.+. +-.+ ...++.. +..-.....+++-+++|-|+=
T Consensus 245 vVI~aT~s~~-~~i~--------~~~l~~~---~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 245 IVISSTGAPH-PIIG--------KGMVERA---LKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EEEECCCCCC-cEEc--------HHHHHHH---HhhccCCCeEEEEeCCCCCCc
Confidence 9998754331 1111 1112221 111101457899999998753
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.13 Score=51.52 Aligned_cols=73 Identities=22% Similarity=0.275 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
...+++||| +|..|...+..|+. .++ ..|.+ .+++.++++..+.++.+.. + .++....+.++++.+|
T Consensus 128 ~~~~v~iiG-aG~qA~~~~~al~~~~~i----~~v~V----~~R~~~~a~~~a~~~~~~~-g--~~v~~~~~~~~av~~a 195 (326)
T TIGR02992 128 DSSVVAIFG-AGMQARLQLEALTLVRDI----RSARI----WARDSAKAEALALQLSSLL-G--IDVTAATDPRAAMSGA 195 (326)
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHHhCCc----cEEEE----ECCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhccC
Confidence 457999999 59999998888874 332 23554 5788888888887775321 2 2344455667889999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 196 DiVvta 201 (326)
T TIGR02992 196 DIIVTT 201 (326)
T ss_pred CEEEEe
Confidence 999975
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.14 Score=49.10 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|++++..|+..+.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~ 27 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD 27 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC
Confidence 5799999999999999999998774
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.18 Score=49.22 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+++||+||| .|.+|..++..|... ..+ .++. .+ .|++.++.+..+..+.. .....+..+.+.++|
T Consensus 5 ~~irIGIIG-~G~IG~~~a~~L~~~-~~~--~el~-aV--~dr~~~~a~~~a~~~g~--------~~~~~~~eell~~~D 69 (271)
T PRK13302 5 PELRVAIAG-LGAIGKAIAQALDRG-LPG--LTLS-AV--AVRDPQRHADFIWGLRR--------PPPVVPLDQLATHAD 69 (271)
T ss_pred CeeEEEEEC-ccHHHHHHHHHHHhc-CCC--eEEE-EE--ECCCHHHHHHHHHhcCC--------CcccCCHHHHhcCCC
Confidence 358999999 599999999988764 111 1222 12 45555655544432210 112244556678899
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+|+++..
T Consensus 70 ~Vvi~tp 76 (271)
T PRK13302 70 IVVEAAP 76 (271)
T ss_pred EEEECCC
Confidence 9999854
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.18 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||+|+|+ |.+|+.++..|+..|+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv 23 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV 23 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999886
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.8 Score=43.05 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.||.+++..|+..|.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~ 29 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA 29 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.58 Score=43.26 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++++|.|+||+|.+|.+++..|++.+.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 357999999999999999999998775
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.29 Score=46.39 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
+++|.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-----TLGL----VARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhc
Confidence 46899999999999999999998764 2444 455556655444443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.39 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
+++||+||| .|.||..++..|...|
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G 392 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQG 392 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCc
Confidence 468999999 5999999999998765
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.18 Score=47.69 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 50 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA-----RVVI----ADIKPARARLAALEI 50 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHh
Confidence 45899999999999999999999875 2444 455656655544444
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.21 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
|+++.|+||+|.+|.+++..|++.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~ 26 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT 26 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh
Confidence 568999999999999999999976
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.1 Score=51.91 Aligned_cols=73 Identities=26% Similarity=0.202 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+++||| +|..+..-+..+..-.-+ ++|.+ .+++.++++..+.++.+ . ...+....+.++++++||
T Consensus 127 ~~~~l~viG-aG~QA~~~~~a~~~~~~i---~~v~v----~~r~~~~~~~~~~~~~~-~---~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 127 DARTLGVIG-AGVQARWHLRALAAVRPI---KEVRV----YSRSPERAEAFAARLRD-L---GVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS-----SEEEE----E-SSHHHHHHHHHHHHC-C---CTCEEEESSHHHHHTTSS
T ss_pred CCceEEEEC-CCHHHHHHHHHHHHhCCc---eEEEE----EccChhHHHHHHHhhcc-c---cccceeccchhhhcccCC
Confidence 468999999 599999877766653213 34655 57888888988888887 2 235667777889999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 195 ii~ta 199 (313)
T PF02423_consen 195 IIVTA 199 (313)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 99864
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.63 Score=45.42 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~-----~Vi~----~~R~~~~l~~~~~~l~ 85 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA-----TVVA----VARREDLLDAVADRIT 85 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 36899999999999999999998764 2544 4666666665555543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.4 Score=51.98 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=56.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C----------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N---------- 165 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~---------- 165 (405)
|||.|+||+|++|++++..|+.... + ..|.. ++.+.....+........+ .+++... |
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~-g--~~V~~--l~R~~~~~~~~~~~~~~~~------~~v~~~~~Dl~~~~~~~~~ 69 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRR-E--ATVHV--LVRRQSLSRLEALAAYWGA------DRVVPLVGDLTEPGLGLSE 69 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCC-C--CEEEE--EECcchHHHHHHHHHhcCC------CcEEEEecccCCccCCcCH
Confidence 5899999999999999999994211 1 12432 2222222222222111100 1122111 1
Q ss_pred -cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 166 -PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 166 -~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
..+.++++|+||.+++... ......+....|..-...+.+.+.+.
T Consensus 70 ~~~~~l~~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~ 115 (657)
T PRK07201 70 ADIAELGDIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERL 115 (657)
T ss_pred HHHHHhcCCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhc
Confidence 1233478999998876432 22233345567888788888877774
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.42 Score=46.65 Aligned_cols=117 Identities=15% Similarity=0.025 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~------ 166 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+.. .+.....++.....+.+.. .++.+. .| +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-----~V~i~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~ 123 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-----DIALNY--LPEEEQDAAEVVQLIQAEG----RKAVALPGDLKDEAFCRQ 123 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-----EEEEEe--CCcchHHHHHHHHHHHHcC----CeEEEEecCCCCHHHHHH
Confidence 46899999999999999999998775 244322 2222222333333333211 111111 11 1
Q ss_pred -----ccccCCCcEEEEeCCcCC--CCC--Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 -----YELFEDAEWALLIGAKPR--GPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~--k~g--~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+...|++|..+|... .+. .+ -...+..|+.-...+.+.+..+-..++.||+++.
T Consensus 124 ~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 124 LVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 122346899999887532 211 12 1234566665555555555544323567777664
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.27 Score=45.78 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|++++..|+..+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~ 31 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.6 Score=44.39 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhh-HHHHHHHhhhhcCCCcceEEEe---cCccc--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIG---INPYE-- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~-l~g~a~DL~d~~~~~~~~v~i~---~~~~e-- 168 (405)
+.++|.|+||+|.+|.+++..|+..+-+ .+.+ .+++.+. ++..+.++.... . .++.+. ..+++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~----~V~~----~~r~~~~~~~~~~~~l~~~~-~--~~v~~~~~D~~~~~~~ 75 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA----RVVL----AALPDDPRRDAAVAQMKAAG-A--SSVEVIDFDALDTDSH 75 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC----eEEE----EeCCcchhHHHHHHHHHhcC-C--CceEEEEecCCChHHH
Confidence 4678999999999999999999986421 2444 3455443 555555554321 0 011111 01111
Q ss_pred -----c---cCCCcEEEEeCCcCCCCCC---ch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 -----L---FEDAEWALLIGAKPRGPGM---ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 -----a---l~dADiVIi~~g~~~k~g~---~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
. ..+.|++|..+|....... +- .+.+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 76 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~--~~~~iv~isS 146 (253)
T PRK07904 76 PKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ--GFGQIIAMSS 146 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1 1378988887665321111 11 123555543 234566666664 3466666654
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.48 Score=44.41 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=30.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
++.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~l~ 45 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-----AVAV----ADLNEETAKETAKEIN 45 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 689999999999999999998774 2443 3444455544444443
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.24 Score=45.76 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|++.|.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~ 32 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA 32 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC
Confidence 46899999999999999999998765
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.12 Score=49.85 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~ 29 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW 29 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45799999999999999999998764
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=1 Score=42.24 Aligned_cols=48 Identities=29% Similarity=0.266 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-----TVIL----LGRTEEKLEAVYDEIEA 58 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----cEEE----EeCCHHHHHHHHHHHHh
Confidence 457999999999999999999998764 2443 45555666655555554
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.61 Score=44.00 Aligned_cols=116 Identities=12% Similarity=0.073 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe---cCccc-----
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYE----- 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---~~~~e----- 168 (405)
.+|.|+||+|.+|.+++..|++.+. .+.+ .+++.+.++....++.... +. .++... ..+.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-----~vi~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~i~~~ 71 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-----RVAV----ADINSEKAANVAQEINAEY-GE-GMAYGFGADATSEQSVLAL 71 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-CC-ceeEEEEccCCCHHHHHHH
Confidence 4799999999999999999998764 2443 4555555554444443211 10 011111 11111
Q ss_pred ------ccCCCcEEEEeCCcCCCCC---Cchhh---hHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ------LFEDAEWALLIGAKPRGPG---MERAG---LLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ------al~dADiVIi~~g~~~k~g---~~r~~---ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|+||..+|.+.... .+..+ .+..|.. +.+.+.+.+.+. +.++.+|.++..
T Consensus 72 ~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~~~iv~~ss~ 142 (259)
T PRK12384 72 SRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRD-GIQGRIIQINSK 142 (259)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhC-CCCcEEEEecCc
Confidence 1245799999877543211 11211 2333433 344555656553 235677777664
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.58 Score=44.32 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=33.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
|++.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-----RVVI----SSRNEENLEKALKELK 45 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 5899999999999999999998875 2444 4566666665555554
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.75 Score=42.79 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-----~Vi~----~~r~~~~~~~~~~~~ 51 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-----NVGL----LARTEENLKAVAEEV 51 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 46899999999999999999998775 2444 355555555444444
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.72 Score=43.57 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998765
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.16 Score=49.32 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=59.0
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc----ccCCCc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----LFEDAE 174 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----al~dAD 174 (405)
|.|+||+|++|++++..|...+.. .+.+ ++.....+.+. ++... .....+........ .+.++|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~----~~~~~--~~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT----DILV--VDNLRDGHKFL----NLADL--VIADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc----eEEE--EecCCCchhhh----hhhhe--eeeccCcchhHHHHHHhhccCCCC
Confidence 579999999999999999987741 2332 11111111111 11100 00000110000111 235899
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||.+++.......+.......|......+.+.+.+.. ..+|.++.
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~SS 114 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKG---IPFIYASS 114 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhC---CcEEEEcc
Confidence 99998775322222334456788888888888887752 34555553
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.51 Score=44.37 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|..++..|+..|. .+.+ ++++.+.++....++.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~ 52 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-----KVVV----ADRDAAGGEETVALIR 52 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 47999999999999999999998764 2444 4555555555544443
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.13 Score=50.58 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=40.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|..++..|+..+. ++.+ .|++.. .+ ++.+. . .....+..++.++||+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-----~v~v----~~~~~~-~~----~~~~~--g----~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-----QLHV----TTIGPV-AD----ELLSL--G----AVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-----eEEE----EeCCHh-HH----HHHHc--C----CeecCCHHHHHhcCCEE
Confidence 4899999 69999999999998874 2443 233322 22 12111 1 12234566778999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++-
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9873
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.19 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+||+|+||+|.+|..++..|...+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~ 28 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW 28 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 58999999999999999998886543
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.64 Score=46.20 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
...+.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-----~Vil----~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-----NLVL----VARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHHHHH
Confidence 46899999999999999999999875 3555 56777888877777754
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.38 Score=47.56 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=71.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcc---eEEEecCc------ccc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR---EVKIGINP------YEL 169 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~---~v~i~~~~------~ea 169 (405)
.+|.||+..||.++|.+|+.+|+ .+.| +.+++++|+.++.|+++.. .... .+.++.++ .+.
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~-----nvvL----IsRt~~KL~~v~kEI~~~~-~vev~~i~~Dft~~~~~ye~i~~~ 121 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGF-----NVVL----ISRTQEKLEAVAKEIEEKY-KVEVRIIAIDFTKGDEVYEKLLEK 121 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHHHh-CcEEEEEEEecCCCchhHHHHHHH
Confidence 46899999999999999999987 2555 7899999999999999875 3211 22334344 356
Q ss_pred cCCCcEEEEe--CCcCC-CCC-------CchhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 FEDAEWALLI--GAKPR-GPG-------MERAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 l~dADiVIi~--~g~~~-k~g-------~~r~~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+-|+=|+. +|... -|. .+-.+.+..| ...-+.+.+.|.+ ...|.|++++-
T Consensus 122 l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~--r~~G~IvnigS 187 (312)
T KOG1014|consen 122 LAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE--RKKGIIVNIGS 187 (312)
T ss_pred hcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc--CCCceEEEecc
Confidence 7778875553 34221 121 1111222223 1233444566666 37888888874
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.91 Score=42.39 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.+|++++..|++.|. .+.+ .+++.+.++....++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 49 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA-----RVVV----ADRDAEAAERVAAAI 49 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----ecCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2444 345545444444333
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.9 Score=42.01 Aligned_cols=28 Identities=25% Similarity=0.141 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+.++|.|+||+|.+|.+++..|++.|.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 3457999999999999999999998764
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.17 Score=51.82 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
....++||| +|..+...+..++.- .-+ ++|.+ .+++.++++..+.++.+.. +...++.+..+..+++++|
T Consensus 154 da~~l~iiG-~G~QA~~~l~a~~~v~~~i---~~V~v----~~r~~~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 154 DSKVVGLLG-PGVMGKTILAAFMAVCPGI---DTIKI----KGRGQKSLDSFATWVAETY-PQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhcCCc---cEEEE----ECCCHHHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcCC
Confidence 468999999 599999888777762 212 24554 5788888888888876532 2112466777888999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 225 DIVvta 230 (379)
T PRK06199 225 DIVTYC 230 (379)
T ss_pred CEEEEc
Confidence 999864
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.19 Score=50.64 Aligned_cols=70 Identities=27% Similarity=0.373 Sum_probs=41.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||+|+||+|.+|..++..|...+. . .+.|.++..+.+.. ....+. . .++.+..-+.++++++|+||
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p---~~~l~~~as~~~~g----~~~~~~----~--~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-P---IDKLVLLASDRSAG----RKVTFK----G--KELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-C---hhhEEEEeccccCC----CeeeeC----C--eeEEEEeCChHHhcCCCEEE
Confidence 689999999999999998887543 1 23343332222211 111111 1 13333322356779999999
Q ss_pred EeCC
Q 015501 178 LIGA 181 (405)
Q Consensus 178 i~~g 181 (405)
++.+
T Consensus 67 ~a~g 70 (339)
T TIGR01296 67 FSAG 70 (339)
T ss_pred ECCC
Confidence 9755
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.52 Score=47.09 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++.++++....++.+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-----~Vvl----~~R~~~~l~~~~~~~~~ 53 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-----RLVL----AARDEEALQAVAEECRA 53 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHh
Confidence 46899999999999999999999875 2444 46666777766665543
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.61 Score=44.99 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (405)
.+.+.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... .++.. ..| +.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~-----~Vv~----~~r~~~~l~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 72 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-----RVVL----GDVDKPGLRQAVNHLRAEG----FDVHGVMCDVRHREEVTH 72 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEeCCCCCHHHHHH
Confidence 45799999999999999999999875 2444 4555566665555554221 11111 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-C--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ------ELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~~k-~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+...|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. +..+.|++++.
T Consensus 73 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~-~~~g~iv~isS 143 (275)
T PRK05876 73 LADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQ-GTGGHVVFTAS 143 (275)
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCC
Confidence 122357999998775321 1 11221 22445543 344444445443 23567777764
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.15 Score=50.75 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=56.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh--hhHHHHHHHhhhhcCCC-cceEEEec--CcccccC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPL-LREVKIGI--NPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~--~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~eal~ 171 (405)
|||.|+||+|+||++++..|+..+.- .+.. .+... ...+ ...++.... .. .....++. +..++++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~----~v~~----~~~~~~~~~~~-~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~ 70 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD----SVVN----VDKLTYAGNLE-SLADVSDSE-RYVFEHADICDRAELDRIFA 70 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC----eEEE----ecCCCccchHH-HHHhcccCC-ceEEEEecCCCHHHHHHHHH
Confidence 58999999999999999999987641 1221 22110 1111 111111000 00 00111110 1123343
Q ss_pred --CCcEEEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 172 --DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 172 --dADiVIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
++|+||.+++.... +..........|+.....+.+.+.++
T Consensus 71 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 71 QHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred hcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 47999998875321 11223456788888888888888764
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.58 Score=45.11 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=46.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCccc--------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYE-------- 168 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~e-------- 168 (405)
.+.|+| +|.+|.+++..|. .|. .|.+ .+++.+.++....++.+..... .....++ +++
T Consensus 4 ~~lItG-a~gIG~~la~~l~-~G~-----~Vv~----~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~--d~~~i~~~~~~ 70 (275)
T PRK06940 4 VVVVIG-AGGIGQAIARRVG-AGK-----KVLL----ADYNEENLEAAAKTLREAGFDVSTQEVDVS--SRESVKALAAT 70 (275)
T ss_pred EEEEEC-CChHHHHHHHHHh-CCC-----EEEE----EeCCHHHHHHHHHHHHhcCCeEEEEEeecC--CHHHHHHHHHH
Confidence 345555 5999999999985 442 2444 3455555554444443211000 0111121 111
Q ss_pred --ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHH
Q 015501 169 --LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGK 206 (405)
Q Consensus 169 --al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~ 206 (405)
.+...|++|..+|... ...+-...+..|..-...+.+
T Consensus 71 ~~~~g~id~li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~ 109 (275)
T PRK06940 71 AQTLGPVTGLVHTAGVSP-SQASPEAILKVDLYGTALVLE 109 (275)
T ss_pred HHhcCCCCEEEECCCcCC-chhhHHHHHHHhhHHHHHHHH
Confidence 1246899999887642 112222345556443333333
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.17 Score=50.24 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
...+|+||| +|.+|...+..+.. .+. ..+.+ .+++.++++..+.++... .. .+. ..+..+++.+|
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~~~----~~v~v----~~r~~~~a~~~a~~~~~~--~~--~~~-~~~~~~av~~a 189 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGLPV----RRVWV----RGRTAASAAAFCAHARAL--GP--TAE-PLDGEAIPEAV 189 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhCCC----CEEEE----EcCCHHHHHHHHHHHHhc--CC--eeE-ECCHHHHhhcC
Confidence 468999999 59999999998875 333 23554 577778888887776532 11 222 35567799999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 190 DiVita 195 (304)
T PRK07340 190 DLVVTA 195 (304)
T ss_pred CEEEEc
Confidence 999975
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.1 Score=41.78 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=46.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---Ccc------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPY------ 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---~~~------ 167 (405)
+++.|+||+|.+|.+++..|+..+. .+.+ .+++.++++....++.... +. .++.+.. .+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-----DLAL----CARRTDRLEELKAELLARY-PG-IKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-ceEEEEEcCCCCHHHHHHH
Confidence 5799999999999999999998764 2444 3555565555555444321 10 1122111 112
Q ss_pred -----cccCCCcEEEEeCCcC
Q 015501 168 -----ELFEDAEWALLIGAKP 183 (405)
Q Consensus 168 -----eal~dADiVIi~~g~~ 183 (405)
+.+...|++|..+|..
T Consensus 72 ~~~~~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 72 FAEFRDELGGLDRVIVNAGIG 92 (248)
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 2244689999987753
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.23 Score=47.62 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~ 43 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA 43 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 46899999999999999999998774
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.36 Score=45.82 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch----hhh---HHHHHHHhhhhcCCCcceEEEecCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----LQA---LEGVAMELEDSLFPLLREVKIGINPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~----~~~---l~g~a~DL~d~~~~~~~~v~i~~~~~e 168 (405)
-.||.|+|| |.+|..++..|...|+-. ..|.+ +|++ .++ +.....++.+.. .. .. ...+..+
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~--~~i~i----vdr~gl~~~~r~~~L~~~~~~la~~~-~~-~~--~~~~l~~ 93 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKP--ENIVV----VDSKGVIYEGREDDLNPDKNEIAKET-NP-EK--TGGTLKE 93 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCc--ceEEE----EeCCCccccccchhhhHHHHHHHHHh-cc-Cc--ccCCHHH
Confidence 469999995 999999999999877621 13544 3444 222 222223332211 10 01 1124458
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+++++|++|-+.+ +|+- + .+..+.| + ++.++..++||..
T Consensus 94 ~l~~~dvlIgaT~----~G~~-------~----~~~l~~m---~-~~~ivf~lsnP~~ 132 (226)
T cd05311 94 ALKGADVFIGVSR----PGVV-------K----KEMIKKM---A-KDPIVFALANPVP 132 (226)
T ss_pred HHhcCCEEEeCCC----CCCC-------C----HHHHHhh---C-CCCEEEEeCCCCC
Confidence 8899999887633 4441 1 1222222 2 5567777889974
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.089 Score=59.08 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=60.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dAD 174 (405)
|||.|+||+|++|++++..|+..|. .+.. ++++.... +.... .+ ....+. ....++++++|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-----~Vv~----l~R~~~~~------~~~~v-~~-v~gDL~D~~~l~~al~~vD 63 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-----EVVG----IARHRPDS------WPSSA-DF-IAADIRDATAVESAMTGAD 63 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEE----EECCchhh------cccCc-eE-EEeeCCCHHHHHHHHhCCC
Confidence 5899999999999999999998764 2433 23321110 00000 00 011111 12235678899
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+||.+++... + ....|..-...+.+.+.+.. -..+|.++.+.
T Consensus 64 ~VVHlAa~~~-~------~~~vNv~GT~nLLeAa~~~g--vkr~V~iSS~~ 105 (854)
T PRK05865 64 VVAHCAWVRG-R------NDHINIDGTANVLKAMAETG--TGRIVFTSSGH 105 (854)
T ss_pred EEEECCCccc-c------hHHHHHHHHHHHHHHHHHcC--CCeEEEECCcH
Confidence 9999876421 1 34567666777777777642 23677777664
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.21 Score=49.87 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+++||| +|..+...+..++...-+ ++|.+ .+++.++++..+..+.+. ..++.+..+..+++++||
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v~~i---~~v~v----~~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 194 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNVTDC---RQLWV----WGRSETALEEYRQYAQAL----GFAVNTTLDAAEVAHAAN 194 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhcCCC---CEEEE----ECCCHHHHHHHHHHHHhc----CCcEEEECCHHHHhcCCC
Confidence 478999999 599999888777764222 34555 578888888777655432 124666677789999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 195 IV~ta 199 (315)
T PRK06823 195 LIVTT 199 (315)
T ss_pred EEEEe
Confidence 99875
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.22 Score=46.33 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.+|.+++..|++.+.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~ 31 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA 31 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC
Confidence 357999999999999999999998774
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.54 Score=44.15 Aligned_cols=46 Identities=24% Similarity=0.189 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~ 53 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-----HVIV----SSRKLDGCQAVADAIV 53 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 36899999999999999999998774 2444 4555566655555554
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.48 Score=46.95 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|++|++++..|+..|.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~ 31 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY 31 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC
Confidence 46899999999999999999998764
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.41 Score=45.01 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++|.|+||+|.||++++..|+..+. .+.+ .+++.++++....++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~l 53 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA-----KVVL----ASRRVERLKELRAEI 53 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 47999999999999999999998764 2443 355556655554444
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.47 Score=51.88 Aligned_cols=96 Identities=8% Similarity=0.040 Sum_probs=58.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
+..|||.|+||+|++|++++..|...+. ++.+.. .+. +.+.+ ..++.+ .+
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~-----~v~~~~--~~l~d~~~v---~~~i~~-------------------~~ 428 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI-----AYEYGK--GRLEDRSSL---LADIRN-------------------VK 428 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC-----eEEeec--cccccHHHH---HHHHHh-------------------hC
Confidence 3457999999999999999999987653 232111 111 11111 111110 15
Q ss_pred CcEEEEeCCcCCCCC-----CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 015501 173 AEWALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (405)
Q Consensus 173 ADiVIi~~g~~~k~g-----~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv 221 (405)
.|+||.+++....+. .+..+....|+.....+++.+++.. +.++++
T Consensus 429 pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g---~~~v~~ 479 (668)
T PLN02260 429 PTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG---LLMMNF 479 (668)
T ss_pred CCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC---CeEEEE
Confidence 799999876542221 1344567789999999999988862 344554
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.17 Score=51.13 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+++||| +|..+...+..++.-.-+ ++|.+ .+++.++++..+.++.+. ..++.+..+..+++++||
T Consensus 128 da~~l~iiG-aG~QA~~~l~a~~~vr~i---~~V~v----~~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 195 (346)
T PRK07589 128 DSRTMALIG-NGAQSEFQALAFKALLGI---EEIRL----YDIDPAATAKLARNLAGP----GLRIVACRSVAEAVEGAD 195 (346)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCc---eEEEE----EeCCHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCC
Confidence 368999999 599998877666653212 34554 577888888888877642 124666677889999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 196 IIvta 200 (346)
T PRK07589 196 IITTV 200 (346)
T ss_pred EEEEe
Confidence 99975
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.54 Score=40.78 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+|+ |.+|+.++..|+..|+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv 23 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV 23 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Confidence 6899995 9999999999999887
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.23 Score=49.01 Aligned_cols=100 Identities=17% Similarity=0.319 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..+|+.|| .|.+|++++..|+..|. .+.+ .|++.++. .+|.+.. .++...+.|..+++|+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-----kVtV----~dr~~~k~----~~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-----KVTV----YDRTKDKC----KEFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-----EEEE----EeCcHHHH----HHHHHhc------hhhhCCHHHHHhhcCE
Confidence 57999999 79999999999999876 3555 34544443 3444432 1234567899999999
Q ss_pred EEEeCCcCC----------------CCCCch-hhhHHhhHHHHHHHHHHHHhhcCCCeEE
Q 015501 176 ALLIGAKPR----------------GPGMER-AGLLDINGQIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 176 VIi~~g~~~----------------k~g~~r-~~ll~~N~~i~~~i~~~i~~~a~p~a~v 218 (405)
||..-+.|- .+|..- .|.-...-...+++++.+.. .++++
T Consensus 95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~---~~~~~ 151 (327)
T KOG0409|consen 95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN---KGGRF 151 (327)
T ss_pred EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh---CCCeE
Confidence 998644321 122111 23333345667788887775 35555
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.11 Score=57.17 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=55.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-CcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~dADi 175 (405)
|||.|+||+|+||++++..|+..+. +|.. +++.... ..+....+. ...++. ...+++.++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-----~Vi~----ldr~~~~-------~~~~~ve~v-~~Dl~d~~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-----TVSG----IAQHPHD-------ALDPRVDYV-CASLRNPVLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE----EeCChhh-------cccCCceEE-EccCCCHHHHHHhcCCCE
Confidence 5899999999999999999998764 2332 2322111 000000000 000110 12345678999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||..++.. +.. -...|..-...+.+.+++. + .++|.+|
T Consensus 64 VIHLAa~~--~~~----~~~vNv~Gt~nLleAA~~~-G--vRiV~~S 101 (699)
T PRK12320 64 VIHLAPVD--TSA----PGGVGITGLAHVANAAARA-G--ARLLFVS 101 (699)
T ss_pred EEEcCccC--ccc----hhhHHHHHHHHHHHHHHHc-C--CeEEEEE
Confidence 99987542 111 1135677777788877774 2 3555554
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.12 Score=46.87 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-.+|+|+| .|.||..++..|..-|+ .|.. +|+...... ...+.. +. ..+..+.++.||+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~-----~V~~----~d~~~~~~~----~~~~~~------~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGM-----RVIG----YDRSPKPEE----GADEFG------VE-YVSLDELLAQADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT------EEEE----EESSCHHHH----HHHHTT------EE-ESSHHHHHHH-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCc-----eeEE----ecccCChhh----hccccc------ce-eeehhhhcchhhh
Confidence 58999999 59999999999997665 2332 455433222 111111 11 2356788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
|++.. |..+. ++ .+ -|.+. +.+. ++++++||++--
T Consensus 95 v~~~~--plt~~-T~-~l--i~~~~-------l~~m-k~ga~lvN~aRG 129 (178)
T PF02826_consen 95 VSLHL--PLTPE-TR-GL--INAEF-------LAKM-KPGAVLVNVARG 129 (178)
T ss_dssp EEE-S--SSSTT-TT-TS--BSHHH-------HHTS-TTTEEEEESSSG
T ss_pred hhhhh--ccccc-cc-ee--eeeee-------eecc-ccceEEEeccch
Confidence 99873 22221 11 11 12222 2333 578999999853
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.29 Score=45.94 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+..||+|+|+ |.+|+.++..|+..|+
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gv 52 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGV 52 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCC
Confidence 3569999995 9999999999999887
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.75 Score=44.86 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=23.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++.|+||+|.||.+++..|+..|.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~ 74 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA 74 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC
Confidence 6899999999999999999999875
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.65 Score=50.83 Aligned_cols=115 Identities=19% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh--hhHHHHHHHhhhhcCCCcceEEEe-cC--ccc-
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIG-IN--PYE- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~--~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e- 168 (405)
+++||.|+||+|+||++++..|+..+. + ..|.. .|+.. ..+. .+.... . ..++.+. .| +.+
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~-~--~~V~~----~d~~~~~~~~~----~l~~~~-~-~~~v~~~~~Dl~d~~~ 71 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYP-D--YKIVV----LDKLDYCSNLK----NLNPSK-S-SPNFKFVKGDIASADL 71 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCC-C--CEEEE----EeCCCccchhh----hhhhcc-c-CCCeEEEECCCCChHH
Confidence 468999999999999999999998632 1 12322 22210 1111 111000 0 0122221 11 111
Q ss_pred ---c--cCCCcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 ---L--FEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 ---a--l~dADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
. ..++|+||.+++...... .+.......|..-...+.+.+++.. .-..+|.++-
T Consensus 72 ~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~vkr~I~~SS 132 (668)
T PLN02260 72 VNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG-QIRRFIHVST 132 (668)
T ss_pred HHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEcc
Confidence 1 257999999877532111 1223456678777788888887752 2335666653
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.2 Score=41.83 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=32.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~~ 46 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-----NVVI----TGRTKEKLEEAKLEIE 46 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 5789999999999999999998775 2444 3555555555544443
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.1 Score=41.74 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|++.|.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.96 Score=43.13 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA-----AVMI----VGRNPDKLAAAAEEIE 52 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 47999999999999999999998775 2444 3455455554444443
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.99 Score=42.49 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~ 31 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998765
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.22 Score=53.09 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||+|||| |.+|..++..|...|. ..|.+ ++++.++++..+..+.... ..+....+..+++.+||+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~----~~V~V----~nRs~era~~La~~~~g~~----i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGC----TKMVV----VNRSEERVAALREEFPDVE----IIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCC----CeEEE----EeCCHHHHHHHHHHhCCCc----eEeecHhhHHHHHhcCCE
Confidence 579999995 9999999999988764 13554 5777777766654432110 011112345678899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc---CCCeEEEEeCCchhH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA---SRNVKVIVVGNPCNT 227 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a---~p~a~vIvvtNP~d~ 227 (405)
||.+-+.+ .| -+.++..+.+.... +..-.+|-++.|-|+
T Consensus 333 VIsAT~s~-~p------------vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI 374 (519)
T PLN00203 333 VFTSTSSE-TP------------LFLKEHVEALPPASDTVGGKRLFVDISVPRNV 374 (519)
T ss_pred EEEccCCC-CC------------eeCHHHHHHhhhcccccCCCeEEEEeCCCCCC
Confidence 98753322 12 12223333332110 112478899999765
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.2 Score=41.87 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++..+.++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 54 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-----QVAI----AARHLDALEKLADEIG 54 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 2444 3555566665555554
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.3 Score=41.25 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
||+|+|++|.+|..++..|....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~ 23 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP 23 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC
Confidence 68999988999999999888753
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.22 Score=46.50 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=30.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM 147 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~ 147 (405)
||+.|+||+|.+|.+++..|+..+. .+.+ .+++.++++..+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~-----~v~~----~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH-----KVTL----VGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHH
Confidence 4899999999999999999998764 2444 3555555554443
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.11 Score=49.40 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG 144 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g 144 (405)
+.+++.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~ 44 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-----RVAV----LDKSAAGLQE 44 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHH
Confidence 357999999999999999999998775 2444 3555555443
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.3 Score=47.59 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..++.|+|| |.+|.+++..|...+.. .|.+ .+++.++++..+.++.... .+.+..+..+.+.++|
T Consensus 122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~~----~V~v----~~R~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 122 KGKRILILGA-GGAARAVILPLLDLGVA----EITI----VNRTVERAEELAKLFGALG-----KAELDLELQEELADFD 187 (278)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-----ceeecccchhccccCC
Confidence 3468999995 99999999999987742 3554 5777777776666554221 1222123357788999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||.+-
T Consensus 188 ivInaT 193 (278)
T PRK00258 188 LIINAT 193 (278)
T ss_pred EEEECC
Confidence 999864
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.51 Score=43.84 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGV 45 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.2 Score=41.38 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l 50 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA-----TVIL----VARHQKKLEKVYDAI 50 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCChHHHHHHHHHH
Confidence 36899999999999999999998764 2443 466666666555444
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.34 Score=47.09 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc-cCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea-l~dADi 175 (405)
+||+|||+ |.+|..++..|..+... ++.|..+ .+++.++.+..+ +. +.+..+..+- ....|+
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~----~~~l~~V-~~~~~~~~~~~~----~~-------~~~~~~l~~ll~~~~Dl 65 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQ----PCQLAAL-TRNAADLPPALA----GR-------VALLDGLPGLLAWRPDL 65 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCC----ceEEEEE-ecCCHHHHHHhh----cc-------CcccCCHHHHhhcCCCE
Confidence 69999995 99999999998775432 2333333 455544443332 11 1122333332 378999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
||-+++ .+.+++++..+=+. +.+-.++-++==.|
T Consensus 66 VVE~A~----------------~~av~e~~~~iL~~-g~dlvv~SvGALaD 99 (267)
T PRK13301 66 VVEAAG----------------QQAIAEHAEGCLTA-GLDMIICSAGALAD 99 (267)
T ss_pred EEECCC----------------HHHHHHHHHHHHhc-CCCEEEEChhHhcC
Confidence 999987 48899999888875 36666666665444
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.3 Score=42.81 Aligned_cols=67 Identities=27% Similarity=0.352 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|+|++|.||..++..+...+-+ ++.- . +|.+.++.... . .. .+..+.+..+.++++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~----elva-v--~d~~~~~~~~~----~----~~--~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL----ELVA-A--VDRPGSPLVGQ----G----AL--GVAITDDLEAVLADADV 63 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC----EEEE-E--EecCCcccccc----C----CC--CccccCCHHHhccCCCE
Confidence 589999997699999999877754211 2322 1 34433333211 1 11 23334455556678999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
||..
T Consensus 64 Vid~ 67 (257)
T PRK00048 64 LIDF 67 (257)
T ss_pred EEEC
Confidence 9854
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.4 Score=41.43 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.+|++++..|++.|.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~ 36 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA 36 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 457999999999999999999998765
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.26 Score=48.56 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|||+ |.+|+.++..|+..|+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGV 51 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGI 51 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCC
Confidence 469999995 9999999999999987
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.1 Score=42.11 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~------ 166 (405)
.+++.|+||+|.||..++..|+..|. .+.+ .+++.+.++....++.+.. +. .++... .| +
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dl~~~~~~~~ 77 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-----DVLI----VARDADALAQARDELAEEF-PE-REVHGLAADVSDDEDRRA 77 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-CeEEEEECCCCCHHHHHH
Confidence 46899999999999999999998775 2443 3555566665555554331 11 112111 11 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 -----YELFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+...|++|..+|... .+. .+.. ..+..|.. +.+...+.+.+. +.+.+|+++-
T Consensus 78 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~~sS 147 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH--ASSAIVNIGS 147 (257)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCceEEEECc
Confidence 123456799998876421 111 1111 22344433 334444455442 4466666654
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.13 Score=53.19 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=50.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||.|||| |.+|..++..|...|.- .|.+ .+++.++++..+.++... .+....+.++.+.+||+
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~~----~I~V----~nRt~~ra~~La~~~~~~------~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAPK----QIML----ANRTIEKAQKITSAFRNA------SAHYLSELPQLIKKADI 245 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHhcCC------eEecHHHHHHHhccCCE
Confidence 479999995 99999999999987752 3555 677777776666544211 12222345788999999
Q ss_pred EEEeCCcC
Q 015501 176 ALLIGAKP 183 (405)
Q Consensus 176 VIi~~g~~ 183 (405)
||.+-+.|
T Consensus 246 VI~aT~a~ 253 (414)
T PRK13940 246 IIAAVNVL 253 (414)
T ss_pred EEECcCCC
Confidence 99875543
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.62 Score=49.17 Aligned_cols=115 Identities=13% Similarity=0.063 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c--Cccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~e---- 168 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++..+.++.... . ++.+. . .+.+
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~~~~ 381 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGA-----EVVA----SDIDEAAAERTAELIRAAG-A---VAHAYRVDVSDADAMEA 381 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---eEEEEEcCCCCHHHHHH
Confidence 47899999999999999999998775 2444 4566666665555554321 0 11111 1 1111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -------LFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k~g---~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|...... .+.. ..+..|. .+.+.+.+.+.+. +..+.||+++--
T Consensus 382 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~~sS~ 453 (582)
T PRK05855 382 FAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVER-GTGGHIVNVASA 453 (582)
T ss_pred HHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEECCh
Confidence 1235799999887643211 1111 2234553 3344445555554 245777777643
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.15 Score=48.85 Aligned_cols=25 Identities=8% Similarity=-0.133 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|++++..|++.+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~ 28 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD 28 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 5799999999999999999998764
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.26 Score=49.69 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|||+ |.+|++++..|+..|+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv 48 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI 48 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 358999995 9999999999999886
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.2 Score=42.13 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++..
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-----~vv~----~~r~~~~~~~~~~~~~~ 53 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-----AVAL----ADLDAALAERAAAAIAR 53 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHh
Confidence 46899999999999999999998875 2444 45566666666655543
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.7 Score=40.99 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-C-cceEEEecC-----ccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-L-LREVKIGIN-----PYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-~-~~~v~i~~~-----~~e 168 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++...... . .....++.. ..+
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-----HLHL----VARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 46899999999999999999998765 2444 355556555544444422100 0 001111100 012
Q ss_pred ccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 LFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 al~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+...|++|..+|... .+- .+.. ..+..|.. +.+.+.+.+.+. ..+.|++++.
T Consensus 78 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~iss 140 (259)
T PRK06125 78 EAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR--GSGVIVNVIG 140 (259)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEecC
Confidence 3457899998876532 221 1111 22344433 344455555553 3466776664
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.1 Score=41.94 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|++++..|+..|.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~ 26 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA 26 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC
Confidence 5799999999999999999998765
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=1 Score=42.76 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-----~vv~----~~~~~~~~~~~~~~~~ 55 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-----TIVF----NDINQELVDKGLAAYR 55 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 346899999999999999999998774 2444 3555556655544443
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.14 Score=48.14 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|++|.|+||+|.+|+.++..|++.+.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~ 26 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT 26 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC
Confidence 46899999999999999999998775
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.82 Score=43.62 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA-----NVAV----ASRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998764 2443 3555555554444443
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.37 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
|+||+|+||+|.+|..++..|...+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p 26 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP 26 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC
Confidence 5799999999999999999888654
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.33 Score=47.79 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-.+|+|+|+ |.+|..++..|...|. .+.+ .+++.+++.. +.++ .. ..+. ..+..+.++++|+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~-----~V~v----~~R~~~~~~~-~~~~-----g~-~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA-----RVFV----GARSSADLAR-ITEM-----GL-IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHH-HHHC-----CC-eeec-HHHHHHHhccCCE
Confidence 479999995 9999999999998664 2444 4565544321 1111 11 0111 1234567899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHHHHHHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLK 234 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t~~~~k 234 (405)
||.+. |. + ++ + . +.+... .+++++|.++ +|-.+--..+.+
T Consensus 213 Vint~--P~--~-----ii--~----~---~~l~~~-k~~aliIDlas~Pg~tdf~~Ak~ 253 (287)
T TIGR02853 213 VINTI--PA--L-----VL--T----A---DVLSKL-PKHAVIIDLASKPGGTDFEYAKK 253 (287)
T ss_pred EEECC--Ch--H-----Hh--C----H---HHHhcC-CCCeEEEEeCcCCCCCCHHHHHH
Confidence 99874 21 0 11 1 1 123333 4678888665 676542244433
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.31 Score=45.48 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.73 Score=47.18 Aligned_cols=76 Identities=13% Similarity=0.238 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH--------Hhhh---hcCCCcceEEEec
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELED---SLFPLLREVKIGI 164 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~--------DL~d---~~~~~~~~v~i~~ 164 (405)
.++|+||| .|.||-.+|-.++..|. ++ +++|+++.+.+.+-. |+.. .. -..++.+.++
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~-----~V----iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~-v~~g~lraTt 77 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGF-----KV----IGVDINQKKVDKLNRGESYIEEPDLDEVVKEA-VESGKLRATT 77 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCC-----ce----EeEeCCHHHHHHHhCCcceeecCcHHHHHHHH-HhcCCceEec
Confidence 48999999 79999999999998875 11 235666555543210 1110 00 0113455554
Q ss_pred CcccccCCCcEEEEeCCcC
Q 015501 165 NPYELFEDAEWALLIGAKP 183 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~ 183 (405)
+.+.++.||++|++.-.|
T Consensus 78 -d~~~l~~~dv~iI~VPTP 95 (436)
T COG0677 78 -DPEELKECDVFIICVPTP 95 (436)
T ss_pred -ChhhcccCCEEEEEecCC
Confidence 577888999999985444
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.19 Score=49.16 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=40.5
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEEeC
Q 015501 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (405)
Q Consensus 101 IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~ 180 (405)
||| .|.+|..++..|+..+. ++.+ .|++.++.+... +. ......+..+++++||+||++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-----~V~v----~dr~~~~~~~l~----~~------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-----PVRV----FDLFPDAVEEAV----AA------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHH----Hc------CCeecCCHHHHHhcCCEEEEeC
Confidence 589 59999999999998764 2444 466655554332 11 1223445667899999999873
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.53 Score=43.68 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.||.|+|+ |.+|+.++..|+..|+
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV 43 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI 43 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC
Confidence 69999995 8899999999999987
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.6 Score=41.32 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+.+.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA-----SVAI----CGRDEERLASAEARLR 53 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 35899999999999999999998775 2444 4566666665555554
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.7 Score=40.95 Aligned_cols=44 Identities=27% Similarity=0.230 Sum_probs=31.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++.|+||+|.+|..++..|++.+. .+.+ .+++.+.++....++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD-----RVLA----LDIDAAALAAFADAL 46 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHh
Confidence 4799999999999999999998764 2443 355555555444444
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.2 Score=50.38 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..+|..|...|+ .|.. +|+...... ..+ . . +. ..+..+.+++||+
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~~~G~-----~V~~----~d~~~~~~~--~~~--~---~----~~-~~~l~ell~~aDi 207 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAKGFGM-----RILY----YSRTRKPEA--EKE--L---G----AE-YRPLEELLRESDF 207 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE----ECCCCChhh--HHH--c---C----CE-ecCHHHHHhhCCE
Confidence 37999999 59999999999987664 2332 344322211 111 1 1 11 1356788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC--CchhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--NPCNTNA 229 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt--NP~d~~t 229 (405)
|++.. |..+. +..++.+ +.+... ++++++|+++ ..+|.-+
T Consensus 208 V~l~l--P~t~~---------T~~~i~~--~~~~~m-k~ga~lIN~aRg~~vd~~a 249 (333)
T PRK13243 208 VSLHV--PLTKE---------TYHMINE--ERLKLM-KPTAILVNTARGKVVDTKA 249 (333)
T ss_pred EEEeC--CCChH---------HhhccCH--HHHhcC-CCCeEEEECcCchhcCHHH
Confidence 99873 32121 1122211 233333 5889999998 3455444
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.18 Score=52.07 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+-.|+.|||| |-+|.-++..|...++. .|.+ .+++.++++..+.++. ..+.-..+..+.+.++|
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~----~i~I----aNRT~erA~~La~~~~-------~~~~~l~el~~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVK----KITI----ANRTLERAEELAKKLG-------AEAVALEELLEALAEAD 240 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCC----EEEE----EcCCHHHHHHHHHHhC-------CeeecHHHHHHhhhhCC
Confidence 3578999995 99999999999999873 3554 6888888877777665 12222345678999999
Q ss_pred EEEEeCCcC
Q 015501 175 WALLIGAKP 183 (405)
Q Consensus 175 iVIi~~g~~ 183 (405)
+||.+-+.|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999864443
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.44 Score=42.61 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=44.8
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHhcccCCCCCceEEEeccccchh--h--hHHHHHHHhhhhcCCCcceEEEecCccccc
Q 015501 96 MVNIAVSGA-AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--Q--ALEGVAMELEDSLFPLLREVKIGINPYELF 170 (405)
Q Consensus 96 ~~KI~IIGA-aG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~--~--~l~g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (405)
-.||++||= -++|..+++..+..-|. .+.++.-.... . ..-..+.+.... ...+++++.+..+++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~-------~~~~~~P~~~~~~~~~~~~~~~~~~~~~---~g~~i~~~~~~~e~l 71 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM-------EVVLIAPEGLRYPPDPEVLEKAKKNAKK---NGGKITITDDIEEAL 71 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS-------EEEEESSGGGGGSHHHHHHHHHHHHHHH---HTTEEEEESSHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC-------EEEEECCCcccCCCCHHHHHHHHHHHHH---hCCCeEEEeCHHHhc
Confidence 469999993 36899999988887654 23333222200 1 111112221111 124688888888999
Q ss_pred CCCcEEEEeCC
Q 015501 171 EDAEWALLIGA 181 (405)
Q Consensus 171 ~dADiVIi~~g 181 (405)
++||+|+...-
T Consensus 72 ~~aDvvy~~~~ 82 (158)
T PF00185_consen 72 KGADVVYTDRW 82 (158)
T ss_dssp TT-SEEEEESS
T ss_pred CCCCEEEEcCc
Confidence 99999988643
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.42 Score=47.66 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=40.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-+||+||| .|++|.+++..|...++ .+.+. .+...+.++... + + . +.. .+..+++++||+
T Consensus 3 ~kkIgiIG-~G~mG~AiA~~L~~sG~-----~Viv~---~~~~~~~~~~a~-~--~---G----v~~-~s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIG-YGSQGHAQALNLRDSGL-----NVIVG---LRKGGASWKKAT-E--D---G----FKV-GTVEEAIPQADL 62 (314)
T ss_pred cCEEEEEe-EcHHHHHHHHHHHHCCC-----eEEEE---ECcChhhHHHHH-H--C---C----CEE-CCHHHHHhcCCE
Confidence 46899999 59999999999998775 13221 122222222111 1 1 1 122 246678899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
|+++.
T Consensus 63 VvLaV 67 (314)
T TIGR00465 63 IMNLL 67 (314)
T ss_pred EEEeC
Confidence 99873
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.23 Score=49.54 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=54.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+|+| .|.||..++..|...|+ .+.. +|+..+...+ .. ...-..+..+.+++||+
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~afG~-----~V~~----~~~~~~~~~~----~~--------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQTWGF-----PLRC----WSRSRKSWPG----VQ--------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EeCCCCCCCC----ce--------eecccccHHHHHhcCCE
Confidence 47999999 69999999999987664 2322 3433221110 00 00001245788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|+++. |.. ..|..++. .+.+... ++++++||++-
T Consensus 194 vv~~l--Plt---------~~T~~li~--~~~l~~m-k~ga~lIN~aR 227 (312)
T PRK15469 194 LINLL--PNT---------PETVGIIN--QQLLEQL-PDGAYLLNLAR 227 (312)
T ss_pred EEECC--CCC---------HHHHHHhH--HHHHhcC-CCCcEEEECCC
Confidence 99873 221 12233332 2344554 58899999983
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.2 Score=43.88 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=52.0
Q ss_pred cchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-----------------hhhhHHHHH
Q 015501 84 LKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVA 146 (405)
Q Consensus 84 ~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-----------------~~~~l~g~a 146 (405)
+-.|...++. ..||.|+|+ |.+|+.+|..|+..|+- .|.| +|.|. ...+++..+
T Consensus 9 ~G~eaq~kL~--~s~VLIvG~-gGLG~EiaKnLalaGVg----~itI--~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~ 79 (286)
T cd01491 9 LGHEAMKKLQ--KSNVLISGL-GGLGVEIAKNLILAGVK----SVTL--HDTKPCSWSDLSSQFYLREEDIGKNRAEASQ 79 (286)
T ss_pred cCHHHHHHHh--cCcEEEEcC-CHHHHHHHHHHHHcCCC----eEEE--EcCCccchhhcccCccCChHHhCHHHHHHHH
Confidence 4444443333 359999995 99999999999999872 2444 33332 122444444
Q ss_pred HHhhhhcCCCcceEEEec--CcccccCCCcEEEEeC
Q 015501 147 MELEDSLFPLLREVKIGI--NPYELFEDAEWALLIG 180 (405)
Q Consensus 147 ~DL~d~~~~~~~~v~i~~--~~~eal~dADiVIi~~ 180 (405)
..|.+.. |. .+++... .+.+.+.+.|+||.+.
T Consensus 80 ~~L~eLN-p~-V~V~~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 80 ARLAELN-PY-VPVTVSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred HHHHHHC-CC-CEEEEEeccCCHHHHhcCCEEEEec
Confidence 4444443 32 2343332 2467889999998874
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.66 Score=44.13 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..+|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~ 29 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY 29 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.48 Score=47.25 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+||+|+||+|.+|..+...|...+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999998888764
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.41 Score=46.74 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=51.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC-CCcEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAEWAL 177 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-dADiVI 177 (405)
|.|.||+|.||+++...|...+. ++.+ +-++..+..... .. .+..-....+... ++|.||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-----~v~i----ltR~~~~~~~~~---~~-------~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-----QVTI----LTRRPPKASQNL---HP-------NVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-----eEEE----EEcCCcchhhhc---Cc-------cccccchhhhcccCCCCEEE
Confidence 68999999999999999988764 3443 233333332111 10 1111111122222 799999
Q ss_pred EeCCcCC--CCC-Cchh-hhHHhhHHHHHHHHHHHHhh
Q 015501 178 LIGAKPR--GPG-MERA-GLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 178 i~~g~~~--k~g-~~r~-~ll~~N~~i~~~i~~~i~~~ 211 (405)
..+|.|- +.+ .++. .+..--+..-+.+.+.|.+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~ 99 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAAS 99 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9988762 222 2222 23333345556666666654
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1 Score=43.61 Aligned_cols=141 Identities=19% Similarity=0.189 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCc--------------------hHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH-HHHhhhhcC
Q 015501 96 MVNIAVSGAAGM--------------------IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-AMELEDSLF 154 (405)
Q Consensus 96 ~~KI~IIGAaG~--------------------VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~-a~DL~d~~~ 154 (405)
+|||+|-|| |+ =|+++|...+..|. | ++| .|++.+-.+-. -..++|+
T Consensus 1 ~mkv~vyga-gnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH---D--VVL----aePn~d~~dd~~w~~vedA-- 68 (340)
T COG4007 1 MMKVAVYGA-GNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH---D--VVL----AEPNRDIMDDEHWKRVEDA-- 68 (340)
T ss_pred CceEEEEcC-CccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC---c--EEe----ecCCccccCHHHHHHHHhc--
Confidence 578888885 64 26677777777553 3 665 45543332211 1222332
Q ss_pred CCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHH
Q 015501 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (405)
Q Consensus 155 ~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k 234 (405)
.+++++|+.++.+.+++.|+.-- .| ..+..|.++|...+.+- ++ +.|.|.+-...++.
T Consensus 69 ----GV~vv~dD~eaa~~~Ei~VLFTP----FG-------k~T~~Iarei~~hvpEg----AV---icnTCT~sp~vLy~ 126 (340)
T COG4007 69 ----GVEVVSDDAEAAEHGEIHVLFTP----FG-------KATFGIAREILEHVPEG----AV---ICNTCTVSPVVLYY 126 (340)
T ss_pred ----CcEEecCchhhhhcceEEEEecc----cc-------hhhHHHHHHHHhhCcCC----cE---ecccccCchhHHHH
Confidence 47888999999999999876411 11 23467777777665542 33 45555332222211
Q ss_pred -HCCCCC--CCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCC
Q 015501 235 -NAPSIP--AKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281 (405)
Q Consensus 235 -~s~~~~--~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~ 281 (405)
.-+.+. ++-+|..++ .=.||+-..-++.|++|.++.
T Consensus 127 ~LE~~Lr~kR~dVGvssm-----------HPAgvPGtp~h~~yviagr~t 165 (340)
T COG4007 127 SLEGELRTKREDVGVSSM-----------HPAGVPGTPQHGHYVIAGRST 165 (340)
T ss_pred HhhhhhcCchhhcCcccc-----------CCCCCCCCCCCceEEEeccCC
Confidence 111222 233665443 123566566666788887765
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.7 Score=41.53 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++ +.++..+.++.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-----~vi~----~~r~-~~~~~~~~~~~ 50 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-----YVLA----VDIA-EAVSETVDKIK 50 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCc-HHHHHHHHHHH
Confidence 46899999999999999999998775 2444 3455 45555555554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.3 Score=48.80 Aligned_cols=44 Identities=34% Similarity=0.320 Sum_probs=32.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
++|.|+||+|.||..++..|+..|. .|.+ .+++.+.++....++
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga-----~Vvl----~~r~~~~~~~~~~~l 466 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA-----CVVL----ADLDEEAAEAAAAEL 466 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHHH
Confidence 6899999999999999999998764 2444 456656655444444
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.39 Score=46.08 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||+|+|+ |.+|+.++..|+..|+
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv 56 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV 56 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.24 Score=48.51 Aligned_cols=70 Identities=17% Similarity=0.065 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-Ee--cCcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IG--INPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~--~~~~eal~d 172 (405)
..++.|+|| |.+|.++++.|...|.- .|.+ .+++.++++..+.++.... .+. +. .+..+.+.+
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~~----~i~I----~nRt~~ka~~La~~~~~~~-----~~~~~~~~~~~~~~~~~ 190 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGVT----DITV----INRNPDKLSRLVDLGVQVG-----VITRLEGDSGGLAIEKA 190 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCCC----eEEE----EeCCHHHHHHHHHHhhhcC-----cceeccchhhhhhcccC
Confidence 468999995 99999999999987752 3555 5788788887776653221 111 11 112355688
Q ss_pred CcEEEEe
Q 015501 173 AEWALLI 179 (405)
Q Consensus 173 ADiVIi~ 179 (405)
+|+||.+
T Consensus 191 ~DiVIna 197 (282)
T TIGR01809 191 AEVLVST 197 (282)
T ss_pred CCEEEEC
Confidence 9999986
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.1 Score=41.76 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|++++..|++.+.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~ 31 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA 31 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46899999999999999999998764
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.09 Score=51.45 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc----ccCCCCCceEEEeccccc--hh--hhHHHHHHHhhhhcCCCcceEEEecCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG----EVLGPDQPIALKLLGSER--SL--QALEGVAMELEDSLFPLLREVKIGINPY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~----~~~~~d~~i~L~l~~~d~--~~--~~l~g~a~DL~d~~~~~~~~v~i~~~~~ 167 (405)
-.||.|.|| |..|..++..|... |+-.++..-.+.++|.+- .. ..+......+.+.. . . ....+..
T Consensus 25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~---~-~~~~~L~ 98 (279)
T cd05312 25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E---E-KEGKSLL 98 (279)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C---c-ccCCCHH
Confidence 379999995 99999999888875 541111011233433321 01 11222222222211 0 0 1235688
Q ss_pred cccC--CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch---hHHHHHHHHHCCCCCCC
Q 015501 168 ELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPAK 242 (405)
Q Consensus 168 eal~--dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~---d~~t~~~~k~s~~~~~k 242 (405)
|+++ ++|++|=+.+. +|. +=+++.+.|.+++ ++.+|.-.+||. ++...-+++.+.+ +.
T Consensus 99 e~i~~v~ptvlIG~S~~---~g~-----------ft~evv~~Ma~~~-~~PIIFaLSNPt~~~E~~pe~a~~~t~G--~a 161 (279)
T cd05312 99 EVVKAVKPTVLIGLSGV---GGA-----------FTEEVVRAMAKSN-ERPIIFALSNPTSKAECTAEDAYKWTDG--RA 161 (279)
T ss_pred HHHHhcCCCEEEEeCCC---CCC-----------CCHHHHHHHHhcC-CCCEEEECCCcCCccccCHHHHHHhhcC--CE
Confidence 9999 99998754332 231 2245667777876 889999999997 4555556665432 35
Q ss_pred ceeecchhhH
Q 015501 243 NFHALTRLDE 252 (405)
Q Consensus 243 ~ig~gt~LDs 252 (405)
+|++|+-.+.
T Consensus 162 i~ATGsPf~p 171 (279)
T cd05312 162 LFASGSPFPP 171 (279)
T ss_pred EEEeCCCCCC
Confidence 7888875554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.8 Score=42.44 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
..+|.|+||+|.+|++++..|++.|. .+.+ .+++.+.+.....++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 49 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-----QVCI----NSRNENKLKRMKKTL 49 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 46899999999999999999998775 2443 345555554333333
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.3 Score=42.35 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 55 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-----KVAI----LDRNQEKAEAVVAEIK 55 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 2444 3555555555555543
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.1 Score=42.90 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~ 28 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY 28 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC
Confidence 4689999999999999999998764
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.7 Score=40.98 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.2 Score=41.88 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-----~vv~----~~r~~~~~~~~~~~l~ 56 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQ 56 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 357999999999999999999998774 2433 3455555555555554
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=1 Score=42.00 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+..+|.|+||+|.||++++..|++.+.
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 357999999999999999999998775
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.47 Score=44.39 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~ 30 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA 30 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 346899999999999999999998774
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.41 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+||+|+||+|.+|..++..|...+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~ 25 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE 25 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC
Confidence 5899999999999999999886543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.1 Score=41.74 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++|.|+||+|.+|+.++..|+..+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~ 27 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW 27 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 35899999999999999999998764
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.42 Score=49.02 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=56.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
++|+||| .|.||..++..|...|+ .+. . +|+.....+ ...++ .++...+..+.++.||+|
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~fG~-----~V~--~--~dr~~~~~~-~~~~~---------g~~~~~~l~ell~~aDvV 252 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPFDV-----KLH--Y--TDRHRLPEE-VEQEL---------GLTYHVSFDSLVSVCDVV 252 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEE--E--ECCCCCchh-hHhhc---------CceecCCHHHHhhcCCEE
Confidence 7899999 59999999999887554 232 2 344321111 11111 122224567889999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
++.. |..+ .+..++. .+.+... ++++++||++- .+|.-+
T Consensus 253 ~l~l--Plt~---------~T~~li~--~~~l~~m-k~ga~lIN~aRG~iVDe~A 293 (385)
T PRK07574 253 TIHC--PLHP---------ETEHLFD--ADVLSRM-KRGSYLVNTARGKIVDRDA 293 (385)
T ss_pred EEcC--CCCH---------HHHHHhC--HHHHhcC-CCCcEEEECCCCchhhHHH
Confidence 9873 2211 1222221 2333443 47899999983 444443
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.2 Score=41.97 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..+++.|+||+|.||.+++..|+..+.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~ 34 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF 34 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 456899999999999999999998774
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.39 Score=48.41 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|| |.+|+.++..|+..|+
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv 48 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV 48 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.7 Score=42.27 Aligned_cols=46 Identities=30% Similarity=0.281 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
..++.|+||+|.+|..++..|+..|. .+.+ .+++.+.++..+.++.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-----KLAL----VDLEEAELAALAAELG 54 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhc
Confidence 46899999999999999999998875 2444 4566666666655553
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.8 Score=41.37 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+++.|+||+|.+|.+++..|+..|.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~ 26 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY 26 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.7 Score=40.57 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.++|.|+||+|.||.+++..|+..|.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~ 30 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA 30 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 357899999999999999999998775
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.7 Score=40.47 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
..++.|+||+|.+|..++..|+..|. .+.+ .+++.++++....++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~-----~vi~----~~r~~~~~~~~~~~~ 49 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA-----KLAL----IDLNQEKLEEAVAEC 49 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 46899999999999999999998764 2433 355555555444444
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.56 Score=45.49 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.+++.|+|+ |.+|..++..|+..+. .+.+ .+++.++++..+.++.... .+.....+...+.++|
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~-----~v~v----~~R~~~~~~~la~~~~~~~-----~~~~~~~~~~~~~~~D 180 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADC-----NVII----ANRTVSKAEELAERFQRYG-----EIQAFSMDELPLHRVD 180 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhhcC-----ceEEechhhhcccCcc
Confidence 3578999995 9999999999998653 2444 4667677776666554311 1122222233456899
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+||.+.+
T Consensus 181 ivInatp 187 (270)
T TIGR00507 181 LIINATS 187 (270)
T ss_pred EEEECCC
Confidence 9998744
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.25 Score=46.92 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D 148 (405)
+.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++....+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~ 49 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-----RVAV----LERSAEKLASLRQR 49 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHH
Confidence 346899999999999999999998775 2444 45555555544433
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.8 Score=42.10 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=35.1
Q ss_pred cceeeEEeeccchhHh--hhhc--cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 74 CYGVFCLTYDLKAEEE--TKSW--KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 74 ~~~~~~~~~~~~~~~~--~~~~--~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+-|+--++|-+++-+. .+.+ .+.++|.|+||+|.+|.+++..|+..|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~iLItGasggIG~~la~~l~~~G~ 71 (290)
T PRK06701 20 QPGIESLMNPLPQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGA 71 (290)
T ss_pred CcChhhhCCcccCCCccccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 3477777887766333 1222 2347899999999999999999998764
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=2.2 Score=40.00 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+.+.|+||++.+|..++..|++.|. .+.+ .+++.++++....++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-----TLIL----CDQDQSALKDTYEQCS 50 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHH
Confidence 46899999999999999999999875 2444 4566677766655543
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.21 Score=50.85 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=43.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC----cccccCCCc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYELFEDAE 174 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----~~eal~dAD 174 (405)
|.|+|| |.||+.++..|++..-+. .+.+ .|++.++++..+.++.. .....+.+... ..+.++++|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~---~v~v----a~r~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~d 69 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFE---EVTV----ADRNPEKAERLAEKLLG---DRVEAVQVDVNDPESLAELLRGCD 69 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE----EEEE----EESSHHHHHHHHT--TT---TTEEEEE--TTTHHHHHHHHTTSS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCC---cEEE----EECCHHHHHHHHhhccc---cceeEEEEecCCHHHHHHHHhcCC
Confidence 789997 999999999999876432 2444 67887887766654311 11112222222 245789999
Q ss_pred EEEEeCCc
Q 015501 175 WALLIGAK 182 (405)
Q Consensus 175 iVIi~~g~ 182 (405)
+||.+.+.
T Consensus 70 vVin~~gp 77 (386)
T PF03435_consen 70 VVINCAGP 77 (386)
T ss_dssp EEEE-SSG
T ss_pred EEEECCcc
Confidence 99998663
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.7 Score=41.90 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.9
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+..+..||.|||| |.+|+.++..|+..|+
T Consensus 7 ~~~~~~~V~vvG~-GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 7 LLSRPVSVVLVGA-GGTGSQVIAGLARLHH 35 (244)
T ss_pred HHhCCCeEEEEcC-ChHHHHHHHHHHHccc
Confidence 4467899999995 9999999999998763
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.8 Score=41.49 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++.+.|+||+|.+|.+++..|+..|.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~ 35 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF 35 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.96 Score=45.67 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH-hhhhcCCCcceEEEecCcccccCCCcEEEEe
Q 015501 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLREVKIGINPYELFEDAEWALLI 179 (405)
Q Consensus 109 Gs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D-L~d~~~~~~~~v~i~~~~~eal~dADiVIi~ 179 (405)
|..+|..|+..|. +|.+ .|++++.++....+ +.+ ..+++.++..+++++||+||++
T Consensus 32 G~~MA~~La~aG~-----~V~v----~Dr~~~~l~~~~~~~l~~------~Gi~~asd~~eaa~~ADvVIla 88 (342)
T PRK12557 32 GSRMAIEFAEAGH-----DVVL----AEPNRSILSEELWKKVED------AGVKVVSDDAEAAKHGEIHILF 88 (342)
T ss_pred HHHHHHHHHhCCC-----eEEE----EECCHHHhhHHHHHHHHH------CCCEEeCCHHHHHhCCCEEEEE
Confidence 6778888887663 3544 45555533221111 211 1244556777889999999987
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.98 Score=43.71 Aligned_cols=108 Identities=18% Similarity=0.102 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCCCcceEEE-ec--Ccc----cc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKI-GI--NPY----EL 169 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~----ea 169 (405)
||.|+||+|++|..++..|+..+. .+.+ + ++. ....+ ...++.+. . .+.. .. .+. ++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-----~V~~--~--~~~~~~~~~-~~~~~~~~--~---~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-----EVVV--L--DNLSNGSPE-ALKRGERI--T---RVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-----eEEE--E--eCCCccchh-hhhhhccc--c---ceEEEECCCCCHHHHHHH
Confidence 689999999999999999998764 2433 1 211 11111 11111110 0 1111 11 111 22
Q ss_pred cC--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 170 FE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 170 l~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++ +.|+||.+++....+ ..+....+..|+.....+.+.+.+.. . ..++.++
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~s 120 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTG-V-KKFIFSS 120 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcC-C-CEEEEec
Confidence 32 689999887753211 11233456678888888888777752 2 3444444
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.77 Score=46.90 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||+|||.+|-||..++..|.... +. .|. ++|++ |.. ..+..+.+++||+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~--~V~----g~D~~------------d~~---------~~~~~~~v~~aDl 54 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QL--EVI----GHDPA------------DPG---------SLDPATLLQRADV 54 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CC--EEE----EEcCC------------ccc---------cCCHHHHhcCCCE
Confidence 4699999955999999999998751 21 232 24442 110 1234677899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
||++.
T Consensus 55 Vilav 59 (370)
T PRK08818 55 LIFSA 59 (370)
T ss_pred EEEeC
Confidence 99983
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.1 Score=42.32 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.++|.|+||+|.+|..++..|+..|.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~ 40 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA 40 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 357899999999999999999998775
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.2 Score=41.30 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+..+|.|+||+|.+|++++..|++.+.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc
Confidence 346899999999999999999998764
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.27 Score=49.31 Aligned_cols=63 Identities=22% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-+||+||| .|.||..++..|+.. ++- .+. . .|++.... .... +....+..+.+++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~--~g~--~V~--~--~d~~~~~~------~~~~-------~~~~~~l~ell~~aDv 203 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAKG--YGS--DVV--A--YDPFPNAK------AATY-------VDYKDTIEEAVEGADI 203 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhc--CCC--EEE--E--ECCCccHh------HHhh-------ccccCCHHHHHHhCCE
Confidence 47999999 599999999998532 221 232 2 34432221 0000 1122356788999999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
|+++.
T Consensus 204 Ivl~l 208 (332)
T PRK08605 204 VTLHM 208 (332)
T ss_pred EEEeC
Confidence 99873
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.45 Score=47.60 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+|+||| +|..|...+..+....-+ +.+.+ .|++.++++..+.++.+.. + .++....+..+++. +|
T Consensus 128 ~~~~vgiiG-~G~qa~~h~~al~~~~~i---~~v~v----~~r~~~~~~~~~~~~~~~~-~--~~v~~~~~~~~~l~-aD 195 (326)
T PRK06046 128 DSKVVGIIG-AGNQARTQLLALSEVFDL---EEVRV----YDRTKSSAEKFVERMSSVV-G--CDVTVAEDIEEACD-CD 195 (326)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhhCCc---eEEEE----ECCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhh-CC
Confidence 468999999 599999988888753222 23444 5677777777776665321 2 23455555566676 99
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+++
T Consensus 196 iVv~a 200 (326)
T PRK06046 196 ILVTT 200 (326)
T ss_pred EEEEe
Confidence 99875
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.58 Score=48.44 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-.+|+|+|+ |.||..++..+...|. .+.+ +|+++.+++ .+.++ ++ .+ ....++++++|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga-----~ViV----~d~d~~R~~-~A~~~-----G~--~~---~~~~e~v~~aD 259 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA-----RVIV----TEVDPICAL-QAAME-----GY--EV---MTMEEAVKEGD 259 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EECChhhHH-HHHhc-----CC--EE---ccHHHHHcCCC
Confidence 3579999995 9999999998887765 2433 355555544 33221 11 11 12347788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+||.+.|. ..++..- .+... .+++++++++.+
T Consensus 260 VVI~atG~---------------~~~i~~~--~l~~m-k~GgilvnvG~~ 291 (413)
T cd00401 260 IFVTTTGN---------------KDIITGE--HFEQM-KDGAIVCNIGHF 291 (413)
T ss_pred EEEECCCC---------------HHHHHHH--HHhcC-CCCcEEEEeCCC
Confidence 99987552 1222221 13333 478899999975
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.68 Score=49.94 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH------HHHHHhhhhcCCCc-ceEEEecCcc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE------GVAMELEDSLFPLL-REVKIGINPY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~------g~a~DL~d~~~~~~-~~v~i~~~~~ 167 (405)
+..||+|+| .|.+|++++..|+..|+-. |. .++.|.....+. ..+.++.... ... -+.+...+..
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~~----I~--~vd~D~v~SNlnRIgEl~e~A~~~n~~v-~v~~i~~~~~~dl~ 199 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFPR----FH--AIVTDAEEHALDRIHELAEIAEETDDAL-LVQEIDFAEDQHLH 199 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCCc----EE--EEeccccchhhhHHHHHHHHHHHhCCCC-ceEeccCCcchhHH
Confidence 468999999 6999999999999999842 43 333444322222 2233311110 000 0111223467
Q ss_pred cccCCCcEEEEeCCcC
Q 015501 168 ELFEDAEWALLIGAKP 183 (405)
Q Consensus 168 eal~dADiVIi~~g~~ 183 (405)
+.+++.|+||.++..+
T Consensus 200 ev~~~~DiVi~vsDdy 215 (637)
T TIGR03693 200 EAFEPADWVLYVSDNG 215 (637)
T ss_pred HhhcCCcEEEEECCCC
Confidence 8999999999986643
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.6 Score=44.73 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv 48 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV 48 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.1 Score=40.61 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||++.||.+++..|++.|. .+.+. ..++.+.++..+.++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-----~v~~~---~~~~~~~~~~~~~~~~ 54 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-----NIAFT---YNSNVEEANKIAEDLE 54 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHH
Confidence 46899999999999999999998775 24431 2334455665555554
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.2 Score=42.05 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~ 31 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA 31 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 47899999999999999999998775
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=2.8 Score=39.36 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..+|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC
Confidence 35899999999999999999998875
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=3.1 Score=39.25 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+|.|+||+|.+|.+++..|+..|.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~ 27 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF 27 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999999775
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.56 Score=48.15 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..++..|...|+ .+. . +|+.....+ ...++ .+....+..+.+++||+
T Consensus 199 gktVGIVG-~G~IG~~vA~~L~afG~-----~V~--~--~d~~~~~~~-~~~~~---------g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 199 GKTVGTVG-AGRIGRLLLQRLKPFNC-----NLL--Y--HDRLKMDPE-LEKET---------GAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-----EEE--E--ECCCCcchh-hHhhc---------CceecCCHHHHHhhCCE
Confidence 37999999 59999999999987554 232 2 344321111 11110 11122356788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
|++.. |..+ .+..++. .+.+... ++++++||++- .+|.-+
T Consensus 259 V~l~l--Plt~---------~T~~li~--~~~l~~m-k~ga~lIN~aRG~iVDe~A 300 (386)
T PLN03139 259 VVINT--PLTE---------KTRGMFN--KERIAKM-KKGVLIVNNARGAIMDTQA 300 (386)
T ss_pred EEEeC--CCCH---------HHHHHhC--HHHHhhC-CCCeEEEECCCCchhhHHH
Confidence 99873 3211 1222221 2344444 58899999983 444433
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.4 Score=47.66 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 416 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-----TVFL----VARNGEALDELVAEIR 416 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 46899999999999999999998774 2444 4566666665555553
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.6 Score=41.25 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc--ceEEEec---------C
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGI---------N 165 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~~---------~ 165 (405)
|.+.|+||++.+|..++..|++ +. .+.+ .+++.++++..+.++........ ....++. .
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~-----~Vil----~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE-----DVVL----AARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC-----EEEE----EeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 4588999999999999999984 42 2444 45666777777766654320100 0111111 0
Q ss_pred cccccCCCcEEEEeCCcCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 PYELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g---~~r---~~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+..-|++|..+|...... .+. .+....|. .+.+.+.+.+.+. +.++.||+++.-
T Consensus 71 ~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~~g~Iv~isS~ 138 (246)
T PRK05599 71 TQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQ-TAPAAIVAFSSI 138 (246)
T ss_pred HHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCCCEEEEEecc
Confidence 1223356899998777532111 111 11222232 2233444556553 235778877754
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.75 Score=46.28 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+||+|+||+|.+|..++..|...+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~ 25 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY 25 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 5899999999999999998877654
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.29 Score=50.02 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=32.0
Q ss_pred CcceeeEEeeccchhHh----hhhccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 73 DCYGVFCLTYDLKAEEE----TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 73 ~~~~~~~~~~~~~~~~~----~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.-+||+-.=.+..-.. .+.+ +..||+|||+ |.+|+.++..|+..|+
T Consensus 150 ~~~svf~y~dt~s~R~~i~~~q~kL-~~~~VaIVG~-GG~GS~Va~~LAR~GV 200 (393)
T PRK06153 150 EEDSVFNYPDTASSRAGIGALSAKL-EGQRIAIIGL-GGTGSYILDLVAKTPV 200 (393)
T ss_pred ccCCceehhhhhccccChHHHHHHH-hhCcEEEEcC-CccHHHHHHHHHHcCC
Confidence 33578875433332211 2222 3579999995 9999999999999987
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.58 Score=43.55 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~ 34 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA 34 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=91.96 E-value=2.1 Score=42.02 Aligned_cols=108 Identities=18% Similarity=0.083 Sum_probs=55.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh-hHHHHHHHhhhhcCC---Cc-ceEEEecCc------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFP---LL-REVKIGINP------ 166 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~-~l~g~a~DL~d~~~~---~~-~~v~i~~~~------ 166 (405)
+|.|+||+|++|++++..|+..+... .|.. +..+.+.+ ..+.....+...... .. .++.+...+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~---~V~~--l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 75 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQA---KVIC--LVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL 75 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCC---EEEE--EEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence 58899999999999999999876211 1322 11121111 111111111111000 00 123332221
Q ss_pred -------ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 167 -------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 167 -------~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
.+...++|+||.+++... ......++...|..-...+.+.+.+.
T Consensus 76 gl~~~~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~ 126 (367)
T TIGR01746 76 GLSDAEWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASG 126 (367)
T ss_pred CcCHHHHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhC
Confidence 223468999998876432 12223344567777777777766664
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.5 Score=46.19 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=51.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||.|+||+|++|+++...|...+. ++.. .++. -.|+.|.. .+ ....++. ..|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-----~v~~----~~r~-------~~dl~d~~-~~-------~~~~~~~-~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-----EVIA----TSRS-------DLDLTDPE-AV-------AKLLEAF-KPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-----EEEE----ESTT-------CS-TTSHH-HH-------HHHHHHH---SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-----EEEE----eCch-------hcCCCCHH-HH-------HHHHHHh-CCCeE
Confidence 7999999999999999999987653 1221 1111 11111110 00 0011222 47899
Q ss_pred EEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 177 LLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 177 Ii~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|.+++...-.. .+.......|......+++.+.+. ++++|-+|
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~---~~~li~~S 100 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER---GARLIHIS 100 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC---T-EEEEEE
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc---CCcEEEee
Confidence 98876532111 123345567888888888888874 46666665
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.14 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+||+|++|++++..|++.+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~ 24 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV 24 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC
Confidence 589999999999999999998764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.8 Score=44.41 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~dAD 174 (405)
|+||+|.||+|.+|..+...+.+.+-+ ++.-. +|+...... -.|..... .. .-.+-++.+......++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~----~L~aa---~~~~~~~~~--g~d~ge~~-g~~~~gv~v~~~~~~~~~~~D 71 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL----ELVAA---FDRPGSLSL--GSDAGELA-GLGLLGVPVTDDLLLVKADAD 71 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc----eEEEE---EecCCcccc--ccchhhhc-cccccCceeecchhhcccCCC
Confidence 789999999999999999998876532 12211 233222111 11222111 11 123455556677888999
Q ss_pred EEE
Q 015501 175 WAL 177 (405)
Q Consensus 175 iVI 177 (405)
++|
T Consensus 72 V~I 74 (266)
T COG0289 72 VLI 74 (266)
T ss_pred EEE
Confidence 988
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.48 Score=44.02 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-CCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dAD 174 (405)
.++|+|+| .|.||+.++..|...|. ++.+ +|.+.++++..+.++. .... +..+.+ .+||
T Consensus 28 gk~v~I~G-~G~vG~~~A~~L~~~G~-----~Vvv----~D~~~~~~~~~~~~~g---------~~~v-~~~~l~~~~~D 87 (200)
T cd01075 28 GKTVAVQG-LGKVGYKLAEHLLEEGA-----KLIV----ADINEEAVARAAELFG---------ATVV-APEEIYSVDAD 87 (200)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHcC---------CEEE-cchhhccccCC
Confidence 47999999 59999999999998775 2443 4666565554443221 1111 122333 3799
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+++.++
T Consensus 88 v~vp~A 93 (200)
T cd01075 88 VFAPCA 93 (200)
T ss_pred EEEecc
Confidence 988654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.96 Score=42.14 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~d 172 (405)
+.+||.|||| |.||...+..|+..+. .|.+ +++.. .+ ...++.+. ..+... .-.++.+.+
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga-----~V~V----Is~~~--~~-~l~~l~~~-----~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGA-----HIVV----ISPEL--TE-NLVKLVEE-----GKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----EcCCC--CH-HHHHHHhC-----CCEEEEecCCChhhcCC
Confidence 3579999995 9999999999998773 2544 23221 11 11122211 112221 234568999
Q ss_pred CcEEEEeCC
Q 015501 173 AEWALLIGA 181 (405)
Q Consensus 173 ADiVIi~~g 181 (405)
+|+||.+-+
T Consensus 71 adlViaaT~ 79 (202)
T PRK06718 71 AFLVIAATN 79 (202)
T ss_pred ceEEEEcCC
Confidence 999887633
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.52 Score=48.96 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-.+|+|+|+ |.+|..++..+...|. .|.+ +|+++.++...+++ ++ . + .+..++++++|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga-----~ViV----~d~dp~ra~~A~~~------G~--~--v-~~l~eal~~aD 269 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA-----RVIV----TEVDPICALQAAMD------GF--R--V-MTMEEAAELGD 269 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EcCCchhhHHHHhc------CC--E--e-cCHHHHHhCCC
Confidence 4579999995 9999999999988765 2444 34444443322221 11 1 1 13457788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+||.+.|. ..++.. ..+... ++++++++++-+.
T Consensus 270 VVI~aTG~---------------~~vI~~--~~~~~m-K~GailiNvG~~d 302 (425)
T PRK05476 270 IFVTATGN---------------KDVITA--EHMEAM-KDGAILANIGHFD 302 (425)
T ss_pred EEEECCCC---------------HHHHHH--HHHhcC-CCCCEEEEcCCCC
Confidence 99876442 223331 122332 4678999998543
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=2.6 Score=40.40 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.+|.+++..|+..|.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~ 31 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA 31 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 346899999999999999999998774
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.57 Score=48.39 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-.+|+|+|+ |.+|..++..+...|. .+.. +|.++.++....+ + .+ .+ ....++++++|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga-----~ViV----~d~dp~r~~~A~~---~---G~----~v-~~leeal~~aD 252 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA-----RVIV----TEVDPIRALEAAM---D---GF----RV-MTMEEAAKIGD 252 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC-----EEEE----EeCChhhHHHHHh---c---CC----Ee-CCHHHHHhcCC
Confidence 4579999995 9999999998887664 2433 3333333321111 1 11 11 12356889999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+||.+.|. ..++..- .+... ++++++++++-.
T Consensus 253 VVItaTG~---------------~~vI~~~--~~~~m-K~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATGN---------------KDVIRGE--HFENM-KDGAIVANIGHF 284 (406)
T ss_pred EEEECCCC---------------HHHHHHH--HHhcC-CCCcEEEEECCC
Confidence 99876442 2333321 22222 477899999864
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.66 E-value=2.6 Score=38.98 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+.|+||+|.+|.+++..|+..|.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~ 25 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY 25 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC
Confidence 578999999999999999998765
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.88 Score=42.15 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.||..++..|++.|.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~ 31 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA 31 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.75 Score=50.66 Aligned_cols=46 Identities=33% Similarity=0.364 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.||.+++..|++.|. .|.+ .+++.+.++....++.
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga-----~Vvi----~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA-----HVVL----ADLNLEAAEAVAAEIN 459 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 36899999999999999999998775 2444 3555555555544443
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=2.8 Score=39.55 Aligned_cols=26 Identities=4% Similarity=0.179 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46999999999999999999998775
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=1.4 Score=42.64 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
|+||+|||+ |.||..++..|...+
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~ 24 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDP 24 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCC
Confidence 579999996 999999999887754
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.52 Score=43.74 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||+|+|+ |.+|+.++..|+..|+
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GV 45 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGI 45 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCC
Confidence 469999995 8899999999999987
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=2.9 Score=38.95 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~ 28 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF 28 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC
Confidence 5789999999999999999998874
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.7 Score=45.62 Aligned_cols=68 Identities=18% Similarity=0.019 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..||.|+|+ |.+|..++..|...|. .+.+ +|++.++.+ .+.++ +. +.....+..+.++++|
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga-----~V~v----~~r~~~~~~-~~~~~-----G~--~~~~~~~l~~~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGA-----NVTV----GARKSAHLA-RITEM-----GL--SPFHLSELAEEVGKID 212 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EECCHHHHH-HHHHc-----CC--eeecHHHHHHHhCCCC
Confidence 3589999995 9999999999988663 2444 455544322 22221 11 1111123457789999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||.+.
T Consensus 213 iVI~t~ 218 (296)
T PRK08306 213 IIFNTI 218 (296)
T ss_pred EEEECC
Confidence 999873
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.34 Score=49.67 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|+||+.++..|...|+ .+.. +|+.....+ .. .. ..+..+.+++||+
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~G~-----~V~~----~Dp~~~~~~-------~~-------~~-~~~l~ell~~aDi 170 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGLGW-----KVLV----CDPPRQEAE-------GD-------GD-FVSLERILEECDV 170 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----ECCcccccc-------cC-------cc-ccCHHHHHhhCCE
Confidence 47999999 59999999999987664 2332 343211110 00 01 1245677899999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
|++.
T Consensus 171 V~lh 174 (381)
T PRK00257 171 ISLH 174 (381)
T ss_pred EEEe
Confidence 9886
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.57 Score=47.09 Aligned_cols=74 Identities=24% Similarity=0.178 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
....++|||+ |..+..-+..+..- ++- ++|.+ .+++.+..+..+.++.+.. + .++....+..+++++||
T Consensus 129 da~~laiIGa-G~qA~~ql~a~~~v--~~~-~~I~i----~~r~~~~~e~~a~~l~~~~-~--~~v~a~~s~~~av~~aD 197 (330)
T COG2423 129 DASTLAIIGA-GAQARTQLEALKAV--RDI-REIRV----YSRDPEAAEAFAARLRKRG-G--EAVGAADSAEEAVEGAD 197 (330)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhh--CCc-cEEEE----EcCCHHHHHHHHHHHHhhc-C--ccceeccCHHHHhhcCC
Confidence 4688999995 99988877766653 221 24554 5778888888888877543 1 14555567789999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 198 iIvt~ 202 (330)
T COG2423 198 IVVTA 202 (330)
T ss_pred EEEEe
Confidence 99875
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=3.4 Score=38.24 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++.|+||+|.+|.+++..|+..|.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~ 27 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY 27 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 4889999999999999999998764
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.36 Score=48.79 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-CCCcceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~~~eal~dAD 174 (405)
-++|+||| .|.||..+|..|...|+ .|.. +|+...........+.... ..+........+..+.++.||
T Consensus 159 gktvGIiG-~G~IG~~vA~~l~afG~-----~V~~----~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aD 228 (347)
T PLN02928 159 GKTVFILG-YGAIGIELAKRLRPFGV-----KLLA----TRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEAD 228 (347)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhhCCC-----EEEE----ECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCC
Confidence 37999999 59999999999987664 2432 3443211110000000000 000000001235678999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+|++.. |..+. |..++. .+.+... +|++++||++=
T Consensus 229 iVvl~l--Plt~~---------T~~li~--~~~l~~M-k~ga~lINvaR 263 (347)
T PLN02928 229 IVVLCC--TLTKE---------TAGIVN--DEFLSSM-KKGALLVNIAR 263 (347)
T ss_pred EEEECC--CCChH---------hhcccC--HHHHhcC-CCCeEEEECCC
Confidence 999873 32221 111221 2334443 58899999984
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.34 Score=48.65 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.|+||+|+||+|..|..+...|...+-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ 27 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD 27 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Confidence 378999999999999999999988764
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.35 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+||+|.|+ |.||..+...|.+++.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~ 25 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGR 25 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCC
Confidence 579999996 9999999999887653
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.4 Score=48.09 Aligned_cols=93 Identities=20% Similarity=0.151 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|+||+.++..+...|+ .+.. +|+...+-. + -.+.. .-..+..+-++.|||
T Consensus 142 gkTvGIiG-~G~IG~~va~~l~afgm-----~v~~----~d~~~~~~~--~--~~~~~-------~~~~~Ld~lL~~sDi 200 (324)
T COG0111 142 GKTVGIIG-LGRIGRAVAKRLKAFGM-----KVIG----YDPYSPRER--A--GVDGV-------VGVDSLDELLAEADI 200 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-----eEEE----ECCCCchhh--h--ccccc-------eecccHHHHHhhCCE
Confidence 36999999 59999999999988765 2332 444211111 1 01111 111346788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++. .|..+. +|- + -|.+ .+.+. ++++++||++=
T Consensus 201 v~lh--~PlT~e-T~g-~--i~~~-------~~a~M-K~gailIN~aR 234 (324)
T COG0111 201 LTLH--LPLTPE-TRG-L--INAE-------ELAKM-KPGAILINAAR 234 (324)
T ss_pred EEEc--CCCCcc-hhc-c--cCHH-------HHhhC-CCCeEEEECCC
Confidence 9885 333221 111 1 1212 22332 47889999883
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.13 E-value=2.3 Score=42.86 Aligned_cols=128 Identities=24% Similarity=0.157 Sum_probs=71.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---Cccccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELF 170 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---~~~eal 170 (405)
++-.+|+|+|+ |.+|...++.....+ + ++.. +|+++++++ .+.+|- .+..+.. +..+++
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~g-a----~Via----~~~~~~K~e-~a~~lG-------Ad~~i~~~~~~~~~~~ 226 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMG-A----EVIA----ITRSEEKLE-LAKKLG-------ADHVINSSDSDALEAV 226 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcC-C----eEEE----EeCChHHHH-HHHHhC-------CcEEEEcCCchhhHHh
Confidence 34689999995 888877666655555 2 2433 577777765 555542 1222221 223333
Q ss_pred CC-CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch-hHHH-H-HHHHHCCCCCCCceee
Q 015501 171 ED-AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC-NTNA-L-ICLKNAPSIPAKNFHA 246 (405)
Q Consensus 171 ~d-ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~-d~~t-~-~~~k~s~~~~~k~ig~ 246 (405)
++ +|+||.+.+ + .-+....+.++ ++|.++.+++|- ..+. . +..-... ..++.|.
T Consensus 227 ~~~~d~ii~tv~-~---------------~~~~~~l~~l~----~~G~~v~vG~~~~~~~~~~~~~~li~~--~~~i~GS 284 (339)
T COG1064 227 KEIADAIIDTVG-P---------------ATLEPSLKALR----RGGTLVLVGLPGGGPIPLLPAFLLILK--EISIVGS 284 (339)
T ss_pred HhhCcEEEECCC-h---------------hhHHHHHHHHh----cCCEEEEECCCCCcccCCCCHHHhhhc--CeEEEEE
Confidence 33 999998865 2 12223333333 789999999994 3322 1 1111111 1256664
Q ss_pred --cchhhHHHHHHHHHH
Q 015501 247 --LTRLDENRAKCQLAL 261 (405)
Q Consensus 247 --gt~LDs~R~~~~lA~ 261 (405)
||.-|..-+..+.++
T Consensus 285 ~~g~~~d~~e~l~f~~~ 301 (339)
T COG1064 285 LVGTRADLEEALDFAAE 301 (339)
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 677777666666544
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.41 Score=44.76 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=40.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-Eec----CcccccCCC
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI----NPYELFEDA 173 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~----~~~eal~dA 173 (405)
|+|+||+|.+|++++..|+..+. +|.... .+.+.+. +..|.+.. . .+. ..- ...++|+|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-----~V~~l~--R~~~~~~----~~~l~~~g--~--~vv~~d~~~~~~l~~al~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-----SVRALV--RDPSSDR----AQQLQALG--A--EVVEADYDDPESLVAALKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-----CEEEEE--SSSHHHH----HHHHHHTT--T--EEEES-TT-HHHHHHHHTTC
T ss_pred CEEECCccHHHHHHHHHHHhCCC-----CcEEEE--eccchhh----hhhhhccc--c--eEeecccCCHHHHHHHHcCC
Confidence 78999999999999999999543 354322 2222122 22232221 1 111 111 234689999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|.|+++-+
T Consensus 66 d~v~~~~~ 73 (233)
T PF05368_consen 66 DAVFSVTP 73 (233)
T ss_dssp SEEEEESS
T ss_pred ceEEeecC
Confidence 99998744
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.51 Score=46.35 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=46.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~dA 173 (405)
..++.|+|| |..|.++++.|+..+.- .|.+ .+++.++++..+.++.... +.. .+.... +..+.+.++
T Consensus 127 ~k~vlilGa-GGaarAi~~aL~~~g~~----~i~i----~nR~~~ka~~La~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 195 (283)
T PRK14027 127 LDSVVQVGA-GGVGNAVAYALVTHGVQ----KLQV----ADLDTSRAQALADVINNAV-GRE-AVVGVDARGIEDVIAAA 195 (283)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EcCCHHHHHHHHHHHhhcc-Ccc-eEEecCHhHHHHHHhhc
Confidence 468999995 99999999999987752 3555 5777788877776653211 110 111111 112345689
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+||-+
T Consensus 196 divINa 201 (283)
T PRK14027 196 DGVVNA 201 (283)
T ss_pred CEEEEc
Confidence 999875
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=91.09 E-value=2.2 Score=37.04 Aligned_cols=115 Identities=15% Similarity=0.076 Sum_probs=65.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch--hhhHHHHHHHhhhhcCCCcceEEEec---Cc------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGI---NP------ 166 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~~---~~------ 166 (405)
.+.|+||+|.+|..++..|++.+-. .+.+ ..++ .+.+.....++.... .++.+.. .+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~----~v~~----~~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~~~~~~~ 69 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGAR----VVIL----TSRSEDSEGAQELIQELKAPG----AKITFIECDLSDPESIRA 69 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTE----EEEE----EESSCHHHHHHHHHHHHHHTT----SEEEEEESETTSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCce----EEEE----eeecccccccccccccccccc----cccccccccccccccccc
Confidence 6889999999999999999998431 2443 2333 445554555454211 2222221 11
Q ss_pred -----ccccCCCcEEEEeCCcCCC-CCCc--h---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 167 -----YELFEDAEWALLIGAKPRG-PGME--R---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~k-~g~~--r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
.+.....|++|..+|.... +..+ . ...+..|..-...+.+.+.. . ..+.|++++-...
T Consensus 70 ~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~-~~g~iv~~sS~~~ 138 (167)
T PF00106_consen 70 LIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-Q-GGGKIVNISSIAG 138 (167)
T ss_dssp HHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-H-TTEEEEEEEEGGG
T ss_pred cccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-c-cccceEEecchhh
Confidence 1234578999988776541 1111 1 13345554444445555555 3 5788888886553
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.2 Score=44.02 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEE-eccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~-l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+-+|++-+|-..+|+.++...-+.-|+ | +.+. --+++.+++- ...+..+.. .....++++.|.+++++||
T Consensus 152 ~g~k~a~vGDgNNv~nSl~~~~a~~G~---d--v~ia~Pk~~~p~~~~-~~~a~~~a~---~~g~~i~~t~d~~eAv~gA 222 (310)
T COG0078 152 KGLKLAYVGDGNNVANSLLLAAAKLGM---D--VRIATPKGYEPDPEV-VEKAKENAK---ESGGKITLTEDPEEAVKGA 222 (310)
T ss_pred cCcEEEEEcCcchHHHHHHHHHHHhCC---e--EEEECCCcCCcCHHH-HHHHHHHHH---hcCCeEEEecCHHHHhCCC
Confidence 458999999855666665555444443 1 2210 0011222222 223333221 1234789999999999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|..-
T Consensus 223 DvvyTD 228 (310)
T COG0078 223 DVVYTD 228 (310)
T ss_pred CEEEec
Confidence 998864
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.6 Score=45.83 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=58.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (405)
|||.|+|+.|++|..|...|. .+. +-+.+ ++.. +|+.+.. ...+.++ .-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~----~v~a~-----~~~~-------~Ditd~~-----------~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF----EVIAT-----DRAE-------LDITDPD-----------AVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc----eEEec-----cCcc-------ccccChH-----------HHHHHHHhhCCC
Confidence 569999999999999988876 221 01222 2110 3333221 0122223 458
Q ss_pred EEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 175 iVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+||.++.+.. +...++..-+..|+.-...+++..+++ ++++|-+|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~---ga~lVhiS 99 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV---GARLVHIS 99 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh---CCeEEEee
Confidence 8888876543 333456666788999999999988886 35666555
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.63 Score=48.87 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-.+|+|+|+ |.||..++..+...|. .|.+ +|++..++. .+.+ + .+ .+ ....++++.+|
T Consensus 253 aGKtVvViGy-G~IGr~vA~~aka~Ga-----~VIV----~e~dp~r~~-eA~~--~---G~--~v---v~leEal~~AD 311 (477)
T PLN02494 253 AGKVAVICGY-GDVGKGCAAAMKAAGA-----RVIV----TEIDPICAL-QALM--E---GY--QV---LTLEDVVSEAD 311 (477)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchhhH-HHHh--c---CC--ee---ccHHHHHhhCC
Confidence 3579999995 9999999999887664 2443 344433322 1211 1 11 11 12456788999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
+||.+.|.. .++. .+.+... ++++++++++-+.+.
T Consensus 312 VVI~tTGt~---------------~vI~--~e~L~~M-K~GAiLiNvGr~~~e 346 (477)
T PLN02494 312 IFVTTTGNK---------------DIIM--VDHMRKM-KNNAIVCNIGHFDNE 346 (477)
T ss_pred EEEECCCCc---------------cchH--HHHHhcC-CCCCEEEEcCCCCCc
Confidence 999865421 1111 1233333 478999999986433
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=2 Score=39.59 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|.++.|+||+|.+|++++..|+..|.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~ 26 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW 26 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC
Confidence 46899999999999999999998764
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.76 Score=54.54 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=46.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+.++||++|| .|.||..++..|+..|. ++.. .|++.++++..+ +.. .....+..+.+++|
T Consensus 322 ~~~~~IGfIG-lG~MG~~mA~~L~~~G~-----~V~v----~dr~~~~~~~l~----~~G------a~~~~s~~e~~~~a 381 (1378)
T PLN02858 322 KPVKRIGFIG-LGAMGFGMASHLLKSNF-----SVCG----YDVYKPTLVRFE----NAG------GLAGNSPAEVAKDV 381 (1378)
T ss_pred cCCCeEEEEC-chHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHH----HcC------CeecCCHHHHHhcC
Confidence 3468999999 69999999999998775 2433 466655554332 111 11234566788999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+||++..
T Consensus 382 DvVi~~V~ 389 (1378)
T PLN02858 382 DVLVIMVA 389 (1378)
T ss_pred CEEEEecC
Confidence 99998743
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=3.1 Score=39.15 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.||.+++..|++.|.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~ 33 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA 33 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999999775
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.61 Score=51.62 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP 124 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~ 124 (405)
..||+|+|+ | +|++++..|+..|++|+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~ 133 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGE 133 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCe
Confidence 479999996 8 99999999999887664
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.51 Score=48.29 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.-++|+||| .|+||+.++..|..-|+
T Consensus 115 ~gktvGIIG-~G~IG~~vA~~l~a~G~ 140 (378)
T PRK15438 115 HDRTVGIVG-VGNVGRRLQARLEALGI 140 (378)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCC
Confidence 357999999 59999999999987664
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.6 Score=41.55 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~ 39 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA 39 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.38 Score=40.00 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=42.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dA 173 (405)
+||+|||+ |.+|......+... +-+ ++. .+ .|++.++++..+... . +..+++..+.+. +.
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~----~v~-~v--~d~~~~~~~~~~~~~-----~----~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDF----EVV-AV--CDPDPERAEAFAEKY-----G----IPVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTE----EEE-EE--ECSSHHHHHHHHHHT-----T----SEEESSHHHHHHHTTE
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCc----EEE-EE--EeCCHHHHHHHHHHh-----c----ccchhHHHHHHHhhcC
Confidence 58999995 99999998888775 221 222 22 466666665443321 1 125566666666 79
Q ss_pred cEEEEeC
Q 015501 174 EWALLIG 180 (405)
Q Consensus 174 DiVIi~~ 180 (405)
|+|+++.
T Consensus 64 D~V~I~t 70 (120)
T PF01408_consen 64 DAVIIAT 70 (120)
T ss_dssp SEEEEES
T ss_pred CEEEEec
Confidence 9999874
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.52 Score=43.64 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+++.|+||+|.+|++++..|+..|.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~ 26 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW 26 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC
Confidence 46799999999999999999998764
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.71 Score=48.53 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-++|+|+|. |.||..+|..+...|. .|.+ ++++..+.....+ + .+ .. .+..++++.||
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga-----~ViV----~e~dp~~a~~A~~---~---G~----~~-~~leell~~AD 311 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGA-----RVVV----TEIDPICALQAAM---E---GY----QV-VTLEDVVETAD 311 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchhHHHHHh---c---Cc----ee-ccHHHHHhcCC
Confidence 3579999995 9999999999987664 2433 3333333211111 1 11 11 23467889999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+|+.+.+.+ .++. .+.+... +|++++++++-.
T Consensus 312 IVI~atGt~---------------~iI~--~e~~~~M-KpGAiLINvGr~ 343 (476)
T PTZ00075 312 IFVTATGNK---------------DIIT--LEHMRRM-KNNAIVGNIGHF 343 (476)
T ss_pred EEEECCCcc---------------cccC--HHHHhcc-CCCcEEEEcCCC
Confidence 999874421 1221 1233333 488999999965
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.78 Score=47.41 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=41.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-----Cccc-cc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-----NPYE-LF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-----~~~e-al 170 (405)
|||.|+|+ |.+|.+++..|...+. ++.+ +|++.++++....++ . ..+..+. ...+ .+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~-----~v~v----id~~~~~~~~~~~~~-----~--~~~~~gd~~~~~~l~~~~~ 63 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN-----DVTV----IDTDEERLRRLQDRL-----D--VRTVVGNGSSPDVLREAGA 63 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----cEEE----EECCHHHHHHHHhhc-----C--EEEEEeCCCCHHHHHHcCC
Confidence 58999995 9999999999988664 3544 566656555332111 0 0111111 1122 37
Q ss_pred CCCcEEEEeC
Q 015501 171 EDAEWALLIG 180 (405)
Q Consensus 171 ~dADiVIi~~ 180 (405)
.++|.||++.
T Consensus 64 ~~a~~vi~~~ 73 (453)
T PRK09496 64 EDADLLIAVT 73 (453)
T ss_pred CcCCEEEEec
Confidence 8999998864
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=90.06 E-value=4.6 Score=39.74 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~------ 167 (405)
+.+.|+||++.||.+++..|+..|.. .+.+ ..++.++++..+.++.... .++.. ..| +.
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~----~V~l----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~ 71 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEW----HVIM----ACRDFLKAEQAAKSLGMPK----DSYTIMHLDLGSLDSVRQF 71 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhcCCC----CeEEEEEcCCCCHHHHHHH
Confidence 47899999999999999999987721 2444 3455555554444443110 11111 111 11
Q ss_pred -----cccCCCcEEEEeCCcCCC--C--CCchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 -----ELFEDAEWALLIGAKPRG--P--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 -----eal~dADiVIi~~g~~~k--~--g~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+...|++|..+|.... + ..+.. ..+..|. -+.+.+.+.+.+..+..+.||+++-
T Consensus 72 ~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 72 VQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred HHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 123468999988775321 1 11211 2244443 3455556666653111367777653
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.23 Score=47.90 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=44.6
Q ss_pred CEEE-EEcCCCchHHHHHHHHHhcccCCCCCceEEEecc-ccchhhhHHHHHHHh--hhhcCCC-cceEEEecCcccccC
Q 015501 97 VNIA-VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMEL--EDSLFPL-LREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~-IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~-~d~~~~~l~g~a~DL--~d~~~~~-~~~v~i~~~~~eal~ 171 (405)
.|++ |+||+|.||+-....|...+.|+ |. .++ ..++..+--+.+-.- .+.. |- ..++++...+.+.|.
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~----ik--vLgAS~RSAGK~ya~a~~wkqt~~l-p~~~~e~~V~ec~~~~F~ 76 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPYFS----IK--VLGASKRSAGKRYAFAGNWKQTDLL-PESAHEYTVEECTADSFN 76 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCcce----ee--eecccccccCCceEecccchhcccc-cchhhhhhHhhcChhhcc
Confidence 4666 99999999999999888887653 32 221 222222111111100 0111 11 124555556788999
Q ss_pred CCcEEEEeC
Q 015501 172 DAEWALLIG 180 (405)
Q Consensus 172 dADiVIi~~ 180 (405)
+||||+...
T Consensus 77 ecDIvfsgl 85 (361)
T KOG4777|consen 77 ECDIVFSGL 85 (361)
T ss_pred cccEEEecC
Confidence 999998753
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.1 Score=46.05 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|||+ |.+|+.++..|+..|+
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~~Gv 66 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAAAGV 66 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 359999995 9999999999999886
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.79 Score=45.98 Aligned_cols=92 Identities=18% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++++||| .|.||..+|..+..-|+ +|. . .|+... .+ ...++ . ... .+..+.++.||+
T Consensus 146 gktvGIiG-~GrIG~avA~r~~~Fgm-----~v~--y--~~~~~~-~~-~~~~~-~--------~~y-~~l~ell~~sDi 203 (324)
T COG1052 146 GKTLGIIG-LGRIGQAVARRLKGFGM-----KVL--Y--YDRSPN-PE-AEKEL-G--------ARY-VDLDELLAESDI 203 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhcCCC-----EEE--E--ECCCCC-hH-HHhhc-C--------cee-ccHHHHHHhCCE
Confidence 58999999 79999999998884333 233 2 344322 11 11111 0 111 237899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++... ..+. +|. ..|.+. +++. ++++++||++=
T Consensus 204 i~l~~P--lt~~-T~h---Lin~~~-------l~~m-k~ga~lVNtaR 237 (324)
T COG1052 204 ISLHCP--LTPE-TRH---LINAEE-------LAKM-KPGAILVNTAR 237 (324)
T ss_pred EEEeCC--CChH-Hhh---hcCHHH-------HHhC-CCCeEEEECCC
Confidence 998732 2111 111 223222 3333 58899999883
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.5 Score=43.37 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=58.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEecCcccccC--CC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFE--DA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~--dA 173 (405)
|+|.|+|++|.||||.+..|++.|. +.++++-+ ..-..+.+.... . .+. .++.-+.-..+.|+ .-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~----~vvV~DNL-~~g~~~~v~~~~------~-~f~~gDi~D~~~L~~vf~~~~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH----EVVVLDNL-SNGHKIALLKLQ------F-KFYEGDLLDRALLTAVFEENKI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC----eEEEEecC-CCCCHHHhhhcc------C-ceEEeccccHHHHHHHHHhcCC
Confidence 6899999999999999999999776 23343211 222222222111 0 100 11111101112222 56
Q ss_pred cEEEEeCCcCCCCCC---chhhhHHhhHHHHHHHHHHHHhhcCCCeEE
Q 015501 174 EWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 174 DiVIi~~g~~~k~g~---~r~~ll~~N~~i~~~i~~~i~~~a~p~a~v 218 (405)
|.||-.++... -|+ .-+.+.+.|.-=-..+.+.|.++. .+-+|
T Consensus 69 daViHFAa~~~-VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g-v~~~v 114 (329)
T COG1087 69 DAVVHFAASIS-VGESVQNPLKYYDNNVVGTLNLIEAMLQTG-VKKFI 114 (329)
T ss_pred CEEEECccccc-cchhhhCHHHHHhhchHhHHHHHHHHHHhC-CCEEE
Confidence 78887665322 122 234567778777788888888874 44444
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.89 Score=43.35 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GV 35 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGV 35 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999986
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.1 Score=53.34 Aligned_cols=65 Identities=15% Similarity=0.010 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||++|| .|.+|..++..|+..|. ++.. .|++.++.+..+. .. ........++.++||+
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~-----~v~v----~dr~~~~~~~l~~----~G------a~~~~s~~e~a~~adv 63 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGF-----KVQA----FEISTPLMEKFCE----LG------GHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHHH----cC------CeecCCHHHHHhcCCE
Confidence 46899999 69999999999998775 2443 4666666554432 11 1233456788889999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
||++-
T Consensus 64 Vi~~l 68 (1378)
T PLN02858 64 LVVVL 68 (1378)
T ss_pred EEEEc
Confidence 99863
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.2 Score=46.19 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh-hhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~-~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.++|.|+|+ |.+|..+|..|+..|. .+.+ +|.+. +.+.....+|.. ...++.......+...++|
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~-----~V~~----~d~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~d 70 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA-----KVIL----TDEKEEDQLKEALEELGE----LGIELVLGEYPEEFLEGVD 70 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE----EeCCchHHHHHHHHHHHh----cCCEEEeCCcchhHhhcCC
Confidence 469999996 8899999999999885 3544 33332 223222233321 1112222111224457899
Q ss_pred EEEEeCCcCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 175 WALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 175 iVIi~~g~~~k~g~~-r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+||.+.|.+ +.-. ....-.++++++...+...... + ..+|-+|--+
T Consensus 71 ~vv~~~g~~--~~~~~~~~a~~~~i~~~~~~~~~~~~~--~-~~vI~ITGS~ 117 (450)
T PRK14106 71 LVVVSPGVP--LDSPPVVQAHKKGIEVIGEVELAYRFS--K-APIVAITGTN 117 (450)
T ss_pred EEEECCCCC--CCCHHHHHHHHCCCcEEeHHHHHHhhc--C-CCEEEEeCCC
Confidence 999977653 2111 1111234555655555433332 2 3455555433
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.68 Score=43.58 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.||.+++..|+..+.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~ 31 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA 31 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 347899999999999999999998764
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=89.69 E-value=1.6 Score=43.49 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.||+|+||+|.+|.-++..|...+-
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~ 26 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD 26 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC
Confidence 4899999999999999999988654
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=89.69 E-value=4.8 Score=42.63 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
+-+.++|.|+||+|++|++++..|+..
T Consensus 8 ~~~~k~VlvTGaTGFlG~~ll~~LL~~ 34 (491)
T PLN02996 8 FLENKTILVTGATGFLAKIFVEKILRV 34 (491)
T ss_pred HhCCCeEEEeCCCcHHHHHHHHHHHhh
Confidence 445679999999999999999998864
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.66 E-value=3.8 Score=40.51 Aligned_cols=117 Identities=9% Similarity=0.010 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---------Cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~~ 166 (405)
...|.|+||.+.+|..+|++++..+. .+.|. |+|.+..+..+..+.+..-.+.....++. .-
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-----~~vl~----Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-----KLVLW----DINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-----eEEEE----eccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 46899999999999999999999875 36664 34434434344434332000001111211 13
Q ss_pred ccccCCCcEEEEeCCc-CCCCCCc--hh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAK-PRGPGME--RA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~-~~k~g~~--r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+++.+.|++|..||. +-++.++ +. ..++.| ..+.+.+.+.|.+. .+|.|+.++-
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~--~~GHIV~IaS 173 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN--NNGHIVTIAS 173 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc--CCceEEEehh
Confidence 4677899999987774 4444432 22 123333 34678888999984 6888877763
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.3 Score=44.80 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-----------------hhhHHHHHHHhhhhcCCCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----------------LQALEGVAMELEDSLFPLLR 158 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-----------------~~~l~g~a~DL~d~~~~~~~ 158 (405)
..||.|+|+ |.+|+.++..|+..|+- .+.| +|.|.- ..+++..+..|.... |..
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg----~i~l--vD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v- 98 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVG----HITI--IDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDV- 98 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC----eEEE--EeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCc-
Confidence 469999995 99999999999998872 2444 333321 124444444454443 321
Q ss_pred eEEEec------CcccccCCCcEEEEeCC
Q 015501 159 EVKIGI------NPYELFEDAEWALLIGA 181 (405)
Q Consensus 159 ~v~i~~------~~~eal~dADiVIi~~g 181 (405)
++.... +..+.++++|+||.+..
T Consensus 99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~d 127 (355)
T PRK05597 99 KVTVSVRRLTWSNALDELRDADVILDGSD 127 (355)
T ss_pred EEEEEEeecCHHHHHHHHhCCCEEEECCC
Confidence 222211 12356789999998743
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.7 Score=40.98 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+++.|+||+|.||.+++..|++.|.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~ 32 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA 32 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 347899999999999999999998774
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.39 E-value=1 Score=45.47 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh-hh--cCC-----Cc-ceEEEecCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-DS--LFP-----LL-REVKIGINP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~-d~--~~~-----~~-~~v~i~~~~ 166 (405)
|+||+|+|+ |.||..++..+...+-+ ++.- + .|.+.+.....+.... +. ..+ +. ..+.+..+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~----eLva-v--~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~ 72 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDM----ELVG-V--AKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTI 72 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCc----EEEE-E--ECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCCh
Confidence 679999996 99999999887764322 2321 2 2333333332222110 00 000 11 135555555
Q ss_pred ccccCCCcEEEEeCC
Q 015501 167 YELFEDAEWALLIGA 181 (405)
Q Consensus 167 ~eal~dADiVIi~~g 181 (405)
.+.+.++|+||.+.+
T Consensus 73 ~el~~~vDVVIdaT~ 87 (341)
T PRK04207 73 EDLLEKADIVVDATP 87 (341)
T ss_pred hHhhccCCEEEECCC
Confidence 566689999998643
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=89.37 E-value=2.3 Score=39.11 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHhccc
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|.|+|++|.+|.+++..|++.|.
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~ 23 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA 23 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999998774
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=5.6 Score=37.57 Aligned_cols=46 Identities=22% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG-~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+| .+|..++..|+..|. .+.+ .+++.++++....++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-----~V~~----~~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA-----RVVI----SDIHERRLGETADELA 63 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999887 699999999998775 2443 4555566655544444
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.4 Score=46.06 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=56.0
Q ss_pred hhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh-hHHHHHHHhhhhcCCCcceEEEecCccc
Q 015501 90 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKIGINPYE 168 (405)
Q Consensus 90 ~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~-~l~g~a~DL~d~~~~~~~~v~i~~~~~e 168 (405)
++.+.+..||.|+| .|..|.+++..|...|. .+.+ .|.+.. .......+|.... ..+.......+
T Consensus 8 ~~~~~~~~~i~v~G-~G~sG~a~a~~L~~~G~-----~V~~----~D~~~~~~~~~~~~~l~~~g----i~~~~~~~~~~ 73 (458)
T PRK01710 8 FKKFIKNKKVAVVG-IGVSNIPLIKFLVKLGA-----KVTA----FDKKSEEELGEVSNELKELG----VKLVLGENYLD 73 (458)
T ss_pred HhhhhcCCeEEEEc-ccHHHHHHHHHHHHCCC-----EEEE----ECCCCCccchHHHHHHHhCC----CEEEeCCCChH
Confidence 56676678999999 59999999999998875 2444 343221 1111112233211 12222223346
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHH
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQ 204 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i 204 (405)
.+.++|+||.+.|.+... .........+++++.++
T Consensus 74 ~~~~~dlVV~Spgi~~~~-p~~~~a~~~~i~i~s~~ 108 (458)
T PRK01710 74 KLDGFDVIFKTPSMRIDS-PELVKAKEEGAYITSEM 108 (458)
T ss_pred HhccCCEEEECCCCCCCc-hHHHHHHHcCCcEEech
Confidence 678999999986664311 11122234556666544
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.37 Score=46.55 Aligned_cols=135 Identities=11% Similarity=0.060 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccC---CCC---CceEEEeccccc--hhh--hHHHHHHHhhhhcCCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVL---GPD---QPIALKLLGSER--SLQ--ALEGVAMELEDSLFPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~---~~d---~~i~L~l~~~d~--~~~--~l~g~a~DL~d~~~~~~~~v~i~~~ 165 (405)
-.||.|.|| |..|-.++..|+..+.- +++ +.+ +++|..- ..+ .+......+.+.. ++-....+
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i--~~vD~~Gll~~~r~~l~~~~~~~~~~~----~~~~~~~~ 97 (254)
T cd00762 25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRI--WXVDRKGLLVKNRKETCPNEYHLARFA----NPERESGD 97 (254)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccE--EEECCCCeEeCCCCccCHHHHHHHHHc----CcccccCC
Confidence 379999995 99999999888865431 111 123 3333321 011 1111112211111 11112357
Q ss_pred cccccC--CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh---HHHHHHHHHCCCCC
Q 015501 166 PYELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIP 240 (405)
Q Consensus 166 ~~eal~--dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---~~t~~~~k~s~~~~ 240 (405)
..|+++ ++|++|=+.+. +|. +=+++.+.|.+++ ++.+|.-.+||.. +...-+++.+. .
T Consensus 98 L~eav~~~kptvlIG~S~~---~g~-----------ft~evv~~Ma~~~-~~PIIFaLSNPt~~aE~tpe~a~~~t~--G 160 (254)
T cd00762 98 LEDAVEAAKPDFLIGVSRV---GGA-----------FTPEVIRAXAEIN-ERPVIFALSNPTSKAECTAEEAYTATE--G 160 (254)
T ss_pred HHHHHHhhCCCEEEEeCCC---CCC-----------CCHHHHHHHhhcC-CCCEEEECCCcCCccccCHHHHHhhcC--C
Confidence 889999 99998854442 331 2245667777776 8899999999984 55566666542 2
Q ss_pred CCceeecchhhHHH
Q 015501 241 AKNFHALTRLDENR 254 (405)
Q Consensus 241 ~k~ig~gt~LDs~R 254 (405)
+.+|++|+.-..+.
T Consensus 161 ~ai~AtGspf~pv~ 174 (254)
T cd00762 161 RAIFASGSPFHPVE 174 (254)
T ss_pred CEEEEECCCCCCcc
Confidence 46788888755443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=3.4 Score=38.24 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|.++.|+||+|.+|.+++..|++.+.
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~ 26 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGY 26 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 45789999999999999999998764
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.19 E-value=5 Score=37.85 Aligned_cols=117 Identities=12% Similarity=-0.009 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-------Ccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~~ 167 (405)
.-..|.|.|++..||..+|..+.+.|- .+.+ ..+++++|.......-+.. ....++--.. -..
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-----~VIi----~gR~e~~L~e~~~~~p~~~-t~v~Dv~d~~~~~~lvewLk 73 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-----TVII----CGRNEERLAEAKAENPEIH-TEVCDVADRDSRRELVEWLK 73 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-----EEEE----ecCcHHHHHHHHhcCcchh-eeeecccchhhHHHHHHHHH
Confidence 346899999999999999999998653 3544 5788787774433221111 1000111000 123
Q ss_pred cccCCCcEEEEeCCcCCCCCCc-----hh---hhH----HhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFEDAEWALLIGAKPRGPGME-----RA---GLL----DINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~-----r~---~ll----~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+-+-+++|-.+|..|..... .. +.+ ..-+.+...+.+.+.+ .|++-||+||-
T Consensus 74 k~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~--q~~a~IInVSS 139 (245)
T COG3967 74 KEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLR--QPEATIINVSS 139 (245)
T ss_pred hhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCceEEEecc
Confidence 4566788999888876644332 11 112 2335567777788887 48999999983
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.15 E-value=1.3 Score=45.42 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv 62 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI 62 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999987
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.4 Score=43.41 Aligned_cols=72 Identities=15% Similarity=0.035 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch---hhhHHHHHHHhhhhcCCCcceEEEec-C----cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS---LQALEGVAMELEDSLFPLLREVKIGI-N----PY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~---~~~l~g~a~DL~d~~~~~~~~v~i~~-~----~~ 167 (405)
..++.|+|| |..+.+++..|+..+.- .|.+ .+++ .++++..+.++.+.. . ..+.+.. + ..
T Consensus 124 ~k~vlvlGa-GGaarAi~~~l~~~g~~----~i~i----~nRt~~~~~ka~~la~~~~~~~-~--~~~~~~~~~~~~~l~ 191 (288)
T PRK12749 124 GKTMVLLGA-GGASTAIGAQGAIEGLK----EIKL----FNRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 191 (288)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EeCCccHHHHHHHHHHHhhhcc-C--ceEEEechhhhhhhh
Confidence 468999995 88899999999887652 3554 4565 346666666553321 1 1122221 1 12
Q ss_pred cccCCCcEEEEe
Q 015501 168 ELFEDAEWALLI 179 (405)
Q Consensus 168 eal~dADiVIi~ 179 (405)
+++.++|+||.+
T Consensus 192 ~~~~~aDivINa 203 (288)
T PRK12749 192 EALASADILTNG 203 (288)
T ss_pred hhcccCCEEEEC
Confidence 356789999985
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=89.10 E-value=3.2 Score=38.72 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~dA 173 (405)
..||.|||+ |.+|..-+..|+..|. .|.+ ++-+.. +.++ ++.+. .+++... -..+.+.++
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga-----~VtV--vsp~~~-~~l~----~l~~~-----~~i~~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA-----QLRV--IAEELE-SELT----LLAEQ-----GGITWLARCFDADILEGA 70 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC-----EEEE--EcCCCC-HHHH----HHHHc-----CCEEEEeCCCCHHHhCCc
Confidence 469999995 9999999999998774 2444 222222 1222 22211 1333322 234678999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+||.+-+
T Consensus 71 ~lVi~at~ 78 (205)
T TIGR01470 71 FLVIAATD 78 (205)
T ss_pred EEEEECCC
Confidence 99987644
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.98 E-value=1.2 Score=47.00 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--C-------
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N------- 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~------- 165 (405)
..+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.... ......++. +
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-----RLLI----IDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHH
Confidence 357899999999999999999998875 2444 4566566654443331110 000111111 0
Q ss_pred cccccCCCcEEEEeCCcCC--CCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 PYELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~--k~g--~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+...|++|..+|... .+- .+. ...+..|..-...+.+.+..+-...+.||+++.-
T Consensus 337 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~ 402 (520)
T PRK06484 337 IQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI 402 (520)
T ss_pred HHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence 0112345799998877532 221 111 1234555443333333333221245778888754
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=1.5 Score=41.67 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=22.6
Q ss_pred CCEEEEEcC--CCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGA--AGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGA--aG~VGs~la~~L~~~~~ 121 (405)
.+++.|+|| ++.+|..++..|+..|.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~ 34 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA 34 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC
Confidence 368999998 68999999999998775
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.3 Score=45.10 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV 159 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=1.3 Score=43.31 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..+|+|+|+ |.||+.++..|+..|+
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GV 54 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGI 54 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.43 Score=45.08 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=43.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
++|.|+||+|.+|++++..|+..+. ++.. .-++.+++.... .... ....+..-......+++|.|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~-----~v~~----~~r~~~~~~~~~---~~v~-~~~~d~~~~~~l~~a~~G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH-----EVRA----AVRNPEAAAALA---GGVE-VVLGDLRDPKSLVAGAKGVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC-----EEEE----EEeCHHHHHhhc---CCcE-EEEeccCCHhHHHHHhccccEE
Confidence 5899999999999999999998853 3433 234444443222 1000 0000111112345788999998
Q ss_pred EEeCC
Q 015501 177 LLIGA 181 (405)
Q Consensus 177 Ii~~g 181 (405)
+++.+
T Consensus 68 ~~i~~ 72 (275)
T COG0702 68 LLISG 72 (275)
T ss_pred EEEec
Confidence 88754
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.70 E-value=1.6 Score=40.97 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|++++..|++.|.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~ 40 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA 40 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.1 Score=44.67 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||+.+|..+..-|+ .|.- +|+.... . +. . +. ..+..+.++.||+
T Consensus 145 gktvGIiG-~G~IG~~vA~~~~~fgm-----~V~~----~d~~~~~-----~---~~--~----~~-~~~l~ell~~sDv 199 (311)
T PRK08410 145 GKKWGIIG-LGTIGKRVAKIAQAFGA-----KVVY----YSTSGKN-----K---NE--E----YE-RVSLEELLKTSDI 199 (311)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhhcCC-----EEEE----ECCCccc-----c---cc--C----ce-eecHHHHhhcCCE
Confidence 47999999 69999999988875443 2322 3442111 0 00 1 11 1356788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+. +| .+ -|.+. +... +|++++||++=
T Consensus 200 v~lh~--Plt~~-T~-~l--i~~~~-------~~~M-k~~a~lIN~aR 233 (311)
T PRK08410 200 ISIHA--PLNEK-TK-NL--IAYKE-------LKLL-KDGAILINVGR 233 (311)
T ss_pred EEEeC--CCCch-hh-cc--cCHHH-------HHhC-CCCeEEEECCC
Confidence 99863 32221 11 11 12222 2332 58999999983
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=88.55 E-value=2.9 Score=41.54 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=43.9
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 95 KMVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAa--G~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
+-.||+++|-. ++|..+++..+...|+ ++.+ .. ...-+.-..+.....+ ...+++++.+..+++++
T Consensus 149 ~g~~va~vGD~~~~~v~~Sl~~~~a~~g~-----~v~~--~~-P~~~~~~~~~~~~~~~----~G~~v~~~~d~~~a~~~ 216 (301)
T TIGR00670 149 DGLKIALVGDLKYGRTVHSLAEALTRFGV-----EVYL--IS-PEELRMPKEILEELKA----KGIKVRETESLEEVIDE 216 (301)
T ss_pred CCCEEEEEccCCCCcHHHHHHHHHHHcCC-----EEEE--EC-CccccCCHHHHHHHHH----cCCEEEEECCHHHHhCC
Confidence 35899999953 5888888888877553 2332 21 1111111111111111 22467788889999999
Q ss_pred CcEEEEe
Q 015501 173 AEWALLI 179 (405)
Q Consensus 173 ADiVIi~ 179 (405)
||+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9998774
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=88.47 E-value=1.1 Score=44.27 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+|| |.+|+.++..|+..|+
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gv 23 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGF 23 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999986
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.8 Score=39.18 Aligned_cols=65 Identities=25% Similarity=0.244 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.++|+|||. |.-|...+..|-..|+ .+.+-+. +. .+-...|.+ + .+ .+ .+..|+.+.||
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~-----~V~Vglr--~~--s~s~~~A~~--~---Gf----~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGV-----NVIVGLR--EG--SASWEKAKA--D---GF----EV-MSVAEAVKKAD 62 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC------EEEEEE---TT--CHHHHHHHH--T---T-----EC-CEHHHHHHC-S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCC-----CEEEEec--CC--CcCHHHHHH--C---CC----ee-ccHHHHHhhCC
Confidence 3579999996 9999999999999886 2444222 11 111112221 1 11 11 24579999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|++.
T Consensus 63 vV~~L 67 (165)
T PF07991_consen 63 VVMLL 67 (165)
T ss_dssp EEEE-
T ss_pred EEEEe
Confidence 99987
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.43 E-value=3.4 Score=36.90 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+-++|.|||| |.||...+..|+..+.
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga 37 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGA 37 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC
Confidence 3579999996 9999999999998764
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.98 Score=43.58 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=54.8
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc--CCCcEEEE
Q 015501 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDAEWALL 178 (405)
Q Consensus 101 IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal--~dADiVIi 178 (405)
|+||+|+||++++..|+..+. .+.+ + .... ..|+.+.. ...+.+ .+.|+||.
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~-----~v~~-~--~~~~-------~~Dl~~~~-----------~l~~~~~~~~~d~Vih 55 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGF-----TNLV-L--RTHK-------ELDLTRQA-----------DVEAFFAKEKPTYVIL 55 (306)
T ss_pred cccCCCcccHHHHHHHHhCCC-----cEEE-e--eccc-------cCCCCCHH-----------HHHHHHhccCCCEEEE
Confidence 899999999999999988653 1222 1 1110 12222211 011112 25799998
Q ss_pred eCCcCCC---CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 179 IGAKPRG---PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 179 ~~g~~~k---~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+++.... ......+....|......+.+.+++.. . ..+|.++
T Consensus 56 ~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~S 100 (306)
T PLN02725 56 AAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHG-V-KKLLFLG 100 (306)
T ss_pred eeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcC-C-CeEEEeC
Confidence 8764321 112344567789888999999988852 2 2455554
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.30 E-value=1.7 Score=42.74 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dAD 174 (405)
-.++.|+|| |..+.++++.|++.+.. +|.+ .+++.++++..+..+.+.. . .+... ..+.+...++|
T Consensus 126 ~~~vlilGA-GGAarAv~~aL~~~g~~----~i~V----~NRt~~ra~~La~~~~~~~-~---~~~~~~~~~~~~~~~~d 192 (283)
T COG0169 126 GKRVLILGA-GGAARAVAFALAEAGAK----RITV----VNRTRERAEELADLFGELG-A---AVEAAALADLEGLEEAD 192 (283)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-c---ccccccccccccccccC
Confidence 478999995 99999999999998862 3655 6788788776766554332 1 11111 12333333799
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+||.+
T Consensus 193 liINa 197 (283)
T COG0169 193 LLINA 197 (283)
T ss_pred EEEEC
Confidence 99985
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=88.30 E-value=0.81 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
|+||+|+||+|.+|..++..+...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~ 24 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA 24 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC
Confidence 479999997799999999998865
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.7 Score=43.31 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+|+ |.+|+.++..|+..|+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv 23 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF 23 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC
Confidence 6899995 9999999999999886
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=88.20 E-value=1.7 Score=41.46 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.|+|+ |.+|+.++..|+..|+
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gv 23 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGF 23 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999886
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=88.18 E-value=6.4 Score=42.97 Aligned_cols=136 Identities=10% Similarity=0.014 Sum_probs=74.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-Cc-----ccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~-----~ea 169 (405)
..+|.|+|+ |.+|+.++..|...+. ++.+ +|.|+++.+... + . . .++..+. .+ ...
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~-----~vvv----ID~d~~~v~~~~-~---~--g--~~v~~GDat~~~~L~~ag 461 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV-----KMTV----LDHDPDHIETLR-K---F--G--MKVFYGDATRMDLLESAG 461 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC-----CEEE----EECCHHHHHHHH-h---c--C--CeEEEEeCCCHHHHHhcC
Confidence 368999995 9999999999998765 3444 466666655332 1 1 1 1222221 12 246
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHHHHHHHHHCCCCCCCceeecc
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALT 248 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t~~~~k~s~~~~~k~ig~gt 248 (405)
+.+||.+|++-..+ ..| ..++..+++.. |+..+++-+ |+.+ .+.+ +..+ .+ .+---+
T Consensus 462 i~~A~~vvv~~~d~-----------~~n----~~i~~~ar~~~-p~~~iiaRa~d~~~--~~~L-~~~G-ad--~v~~e~ 519 (621)
T PRK03562 462 AAKAEVLINAIDDP-----------QTS----LQLVELVKEHF-PHLQIIARARDVDH--YIRL-RQAG-VE--KPERET 519 (621)
T ss_pred CCcCCEEEEEeCCH-----------HHH----HHHHHHHHHhC-CCCeEEEEECCHHH--HHHH-HHCC-CC--EEehhh
Confidence 67899988874321 334 33444556653 887666544 4422 2223 2332 21 221222
Q ss_pred hhhHHHHHHHHHHHhCCCCCCce
Q 015501 249 RLDENRAKCQLALKAGVFYDKVS 271 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~ 271 (405)
.-.+.++-+.+-+.+|+++++++
T Consensus 520 ~e~sl~l~~~~L~~lg~~~~~~~ 542 (621)
T PRK03562 520 FEGALKSGRLVLESLGLGPYEAR 542 (621)
T ss_pred HhHHHHHHHHHHHHcCCCHHHHH
Confidence 22245666677777787766554
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=88.07 E-value=1.5 Score=44.81 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gv 65 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGV 65 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=1.6 Score=41.05 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.||++++..|+..|.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~ 34 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA 34 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC
Confidence 36899999999999999999998764
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=87.96 E-value=1.1 Score=46.02 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcccCCCCCceEEEeccccchhh-hHHHHHHHhhhh---cCCCcceEEEecCccccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDS---LFPLLREVKIGINPYELF 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~-~~~~~~~d~~i~L~l~~~d~~~~-~l~g~a~DL~d~---~~~~~~~v~i~~~~~eal 170 (405)
-++|+||| .|.||+.+|..+. ..|+ .|.. +|+... ........+... .......+....+..+.+
T Consensus 165 gktvGIiG-~G~IG~~vA~~l~~~fGm-----~V~~----~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell 234 (386)
T PLN02306 165 GQTVGVIG-AGRIGSAYARMMVEGFKM-----NLIY----YDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVL 234 (386)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC-----EEEE----ECCCCchhhhhhhhhhcccccccccccccccccCCHHHHH
Confidence 37999999 6999999999875 3333 2322 344321 111111111000 000000112224677889
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.||+|++.. |..+ .|..++.. +.+... +|++.+||++=
T Consensus 235 ~~sDiV~lh~--Plt~---------~T~~lin~--~~l~~M-K~ga~lIN~aR 273 (386)
T PLN02306 235 READVISLHP--VLDK---------TTYHLINK--ERLALM-KKEAVLVNASR 273 (386)
T ss_pred hhCCEEEEeC--CCCh---------hhhhhcCH--HHHHhC-CCCeEEEECCC
Confidence 9999999862 3211 11111111 223333 58899999983
|
|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=0.55 Score=50.34 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-----ccCCCCCceEEEeccccch--h---hhHHHHHHHhhhhcCCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG-----EVLGPDQPIALKLLGSERS--L---QALEGVAMELEDSLFPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~-----~~~~~d~~i~L~l~~~d~~--~---~~l~g~a~DL~d~~~~~~~~v~i~~~ 165 (405)
-.||.|.|| |..|-.++..|+.. |+-.++..-.+.++|.+-- . +.+......+.+. .....+
T Consensus 321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~-------~~~~~~ 392 (581)
T PLN03129 321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD-------HEPGAS 392 (581)
T ss_pred hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh-------cccCCC
Confidence 479999995 99999999888873 4311111112334433210 1 1122222222211 112356
Q ss_pred cccccCC--CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch---hHHHHHHHHHCCCCC
Q 015501 166 PYELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIP 240 (405)
Q Consensus 166 ~~eal~d--ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~---d~~t~~~~k~s~~~~ 240 (405)
..|++++ +|++|=+.+. +|. +=.++.+.|.+++ ++.+|.-.+||. ++...-+++.+.+
T Consensus 393 L~e~v~~vkptvLIG~S~~---~g~-----------Ft~evi~~Ma~~~-~rPIIFaLSNPt~~~E~~pe~a~~~T~G-- 455 (581)
T PLN03129 393 LLEAVKAIKPTVLIGLSGV---GGT-----------FTKEVLEAMASLN-ERPIIFALSNPTSKAECTAEEAYTWTGG-- 455 (581)
T ss_pred HHHHHhccCCCEEEEecCC---CCC-----------CCHHHHHHHHhcC-CCCEEEECCCCCCCcCcCHHHHHHhhcC--
Confidence 8899999 8998754432 221 2235666777775 889999999996 6666667666532
Q ss_pred CCceeecchhhHH
Q 015501 241 AKNFHALTRLDEN 253 (405)
Q Consensus 241 ~k~ig~gt~LDs~ 253 (405)
+-+|.+|+-.+..
T Consensus 456 ~ai~AtGSPf~pv 468 (581)
T PLN03129 456 RAIFASGSPFDPV 468 (581)
T ss_pred CEEEEeCCCCCCe
Confidence 3578888765543
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.55 Score=53.91 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=44.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCC------CCC-ceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLG------PDQ-PIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN 165 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~------~d~-~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~ 165 (405)
.+|.||+|+|| |.||+..+..|+..+-+. +++ .+.+.+ .|.+.+.++..+..+... ..+.+ ..+
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~V--aD~~~~~a~~la~~~~~~-----~~v~lDv~D 638 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIV--ASLYLKDAKETVEGIENA-----EAVQLDVSD 638 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEE--ECCCHHHHHHHHHhcCCC-----ceEEeecCC
Confidence 45889999995 999999999998754321 110 112222 455556655444432111 11223 122
Q ss_pred ---cccccCCCcEEEEeC
Q 015501 166 ---PYELFEDAEWALLIG 180 (405)
Q Consensus 166 ---~~eal~dADiVIi~~ 180 (405)
..+.++++|+||.+.
T Consensus 639 ~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 639 SESLLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHHHHhhcCCCEEEECC
Confidence 223346899999863
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=3.6 Score=44.75 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-Cc-----ccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~-----~ea 169 (405)
..+|.|+|. |.+|+.++..|...+. ++.+ +|.|+++.+.. .+ .. .++..+. .+ ...
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~-----~vvv----ID~d~~~v~~~-~~---~g----~~v~~GDat~~~~L~~ag 461 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM-----RITV----LERDISAVNLM-RK---YG----YKVYYGDATQLELLRAAG 461 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC-----CEEE----EECCHHHHHHH-Hh---CC----CeEEEeeCCCHHHHHhcC
Confidence 368999995 9999999999988765 3544 56666665522 22 11 1222221 11 245
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE-eCCchhHHHHHHHHHCCCCCCCceeecc
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNTNALICLKNAPSIPAKNFHALT 248 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIv-vtNP~d~~t~~~~k~s~~~~~k~ig~gt 248 (405)
+.+||.+|++-+.+ ..| ..++..++++. |+..++. +.|+.+. +.+. ..+ . ..+--=|
T Consensus 462 i~~A~~vv~~~~d~-----------~~n----~~i~~~~r~~~-p~~~IiaRa~~~~~~--~~L~-~~G-a--~~vv~e~ 519 (601)
T PRK03659 462 AEKAEAIVITCNEP-----------EDT----MKIVELCQQHF-PHLHILARARGRVEA--HELL-QAG-V--TQFSRET 519 (601)
T ss_pred CccCCEEEEEeCCH-----------HHH----HHHHHHHHHHC-CCCeEEEEeCCHHHH--HHHH-hCC-C--CEEEccH
Confidence 77999988874321 233 33455566764 8876554 4466432 3333 332 2 1221222
Q ss_pred hhhHHHHHHHHHHHhCCCCCCcee
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSN 272 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~ 272 (405)
..-+..+-...=..+|++++++..
T Consensus 520 ~es~l~l~~~~L~~lg~~~~~~~~ 543 (601)
T PRK03659 520 FSSALELGRKTLVSLGMHPHQAQR 543 (601)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHH
Confidence 222345666666677888777753
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.78 E-value=1.2 Score=42.24 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~ 31 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS 31 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.9 Score=39.03 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
|++.|+||+|.+|.+++..|++.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 47999999999999999999876
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=87.73 E-value=2 Score=41.61 Aligned_cols=132 Identities=15% Similarity=0.071 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc----ccCCCC--CceEEEeccccc----hhhhHHHHHHHhhhhcCCCcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG----EVLGPD--QPIALKLLGSER----SLQALEGVAMELEDSLFPLLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~----~~~~~d--~~i~L~l~~~d~----~~~~l~g~a~DL~d~~~~~~~~v~i~~~ 165 (405)
-.||.|.|| |..|-.++..|+.. |+=.++ ..|.+ +|.+- +.+.+......+.+...+. ....+
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~l--vD~~Gll~~~r~~l~~~~~~~a~~~~~~----~~~~~ 97 (255)
T PF03949_consen 25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWL--VDSKGLLTDDREDLNPHKKPFARKTNPE----KDWGS 97 (255)
T ss_dssp G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEE--EETTEEEBTTTSSHSHHHHHHHBSSSTT----T--SS
T ss_pred HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEE--EeccceEeccCccCChhhhhhhccCccc----ccccC
Confidence 379999995 99999999988876 652100 23443 22220 1122333333333322111 11157
Q ss_pred cccccCCC--cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh---HHHHHHHHHCCCCC
Q 015501 166 PYELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIP 240 (405)
Q Consensus 166 ~~eal~dA--DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d---~~t~~~~k~s~~~~ 240 (405)
..|+++++ |++|=+.+. +| -+=+++.+.|.+++ ++.+|.-.+||.. +...-+++.+.+
T Consensus 98 L~eav~~~kPtvLIG~S~~---~g-----------~ft~evv~~Ma~~~-erPIIF~LSNPt~~aE~~peda~~~t~g-- 160 (255)
T PF03949_consen 98 LLEAVKGAKPTVLIGLSGQ---GG-----------AFTEEVVRAMAKHN-ERPIIFPLSNPTPKAECTPEDAYEWTDG-- 160 (255)
T ss_dssp HHHHHHCH--SEEEECSSS---TT-----------SS-HHHHHHCHHHS-SSEEEEE-SSSCGGSSS-HHHHHHTTTS--
T ss_pred HHHHHHhcCCCEEEEecCC---CC-----------cCCHHHHHHHhccC-CCCEEEECCCCCCcccCCHHHHHhhCCc--
Confidence 78999999 998855443 33 12346777788886 8999999999985 444555555422
Q ss_pred CCceeecchhh
Q 015501 241 AKNFHALTRLD 251 (405)
Q Consensus 241 ~k~ig~gt~LD 251 (405)
+-+|.+|+-.+
T Consensus 161 ~ai~AtGSpf~ 171 (255)
T PF03949_consen 161 RAIFATGSPFP 171 (255)
T ss_dssp EEEEEESS---
T ss_pred eEEEecCCccC
Confidence 23367776533
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.72 E-value=1.3 Score=47.41 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=39.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
++|+||| .|.||..+|..|...|+ .+.. +|+.... ..+.++ . +....+..+.+++||+|
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~~fG~-----~V~~----~d~~~~~--~~~~~~-----g----~~~~~~l~ell~~aDvV 197 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAKAFGM-----KVLA----YDPYISP--ERAEQL-----G----VELVDDLDELLARADFI 197 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE----ECCCCCh--hHHHhc-----C----CEEcCCHHHHHhhCCEE
Confidence 6999999 69999999999987554 2322 3442111 112221 1 12223567889999999
Q ss_pred EEe
Q 015501 177 LLI 179 (405)
Q Consensus 177 Ii~ 179 (405)
++.
T Consensus 198 ~l~ 200 (525)
T TIGR01327 198 TVH 200 (525)
T ss_pred EEc
Confidence 986
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=87.69 E-value=3.4 Score=44.04 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=31.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
..+.||.|+|| |.+|...+..+...|. .|.. +|.+.++++ .+.++
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA-----~V~a----~D~~~~rle-~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA-----IVRA----FDTRPEVAE-QVESM 207 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHH-HHHHc
Confidence 35789999995 9999998888877664 1433 466666655 44443
|
|
| >KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.67 E-value=0.56 Score=46.64 Aligned_cols=48 Identities=29% Similarity=0.254 Sum_probs=39.5
Q ss_pred CcceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccC
Q 015501 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVL 122 (405)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~ 122 (405)
++-|-|++-+.-+.+|-.+.... -||.|||| |..|-.+...|+..|..
T Consensus 18 ~r~gpf~~~~f~~~~e~l~~l~~-~kiLviGA-GGLGCElLKnLal~gF~ 65 (422)
T KOG2015|consen 18 ERPGPFNLDAFEPSEENLEFLQD-CKILVIGA-GGLGCELLKNLALSGFR 65 (422)
T ss_pred cCCCCCCCCCCCCCHHHHHHHhh-CcEEEEcc-CcccHHHHHhHHhhccc
Confidence 44578888888888887666555 79999995 99999999999998874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 405 | ||||
| 1civ_A | 385 | Chloroplast Nadp-Dependent Malate Dehydrogenase Fro | 1e-179 | ||
| 7mdh_A | 375 | Structural Basis For Light Acitvation Of A Chloropl | 1e-173 | ||
| 1wze_A | 327 | Structural Basis For Alteration Of Cofactor Specifi | 3e-84 | ||
| 1iz9_A | 327 | Crystal Structure Of Malate Dehydrogenase From Ther | 2e-80 | ||
| 1bmd_A | 327 | Determinants Of Protein Thermostability Observed In | 2e-80 | ||
| 1bdm_A | 327 | The Structure At 1.8 Angstroms Resolution Of A Sing | 1e-79 | ||
| 1b8p_A | 329 | Malate Dehydrogenase From Aquaspirillum Arcticum Le | 3e-72 | ||
| 4mdh_A | 334 | Refined Crystal Structure Of Cytoplasmic Malate Deh | 6e-70 | ||
| 5mdh_A | 333 | Crystal Structure Of Ternary Complex Of Porcine Cyt | 6e-70 | ||
| 3d5t_A | 331 | Crystal Structure Of Malate Dehydrogenase From Burk | 2e-67 | ||
| 4h7p_A | 345 | Crystal Structure Of A Putative Cytosolic Malate De | 7e-65 | ||
| 3fi9_A | 343 | Crystal Structure Of Malate Dehydrogenase From Porp | 8e-16 | ||
| 1hyg_A | 313 | Crystal Structure Of Mj0490 Gene Product, The Famil | 4e-13 | ||
| 1a5z_A | 319 | Lactate Dehydrogenase From Thermotoga Maritima (tml | 1e-10 | ||
| 2hjr_A | 328 | Crystal Structure Of Cryptosporidium Parvum Malate | 1e-08 | ||
| 1gv0_A | 310 | Structural Basis For Thermophilic Protein Stability | 2e-08 | ||
| 2d4a_A | 308 | Structure Of The Malate Dehydrogenase From Aeropyru | 7e-08 | ||
| 3nep_X | 314 | 1.55a Resolution Structure Of Malate Dehydrogenase | 9e-08 | ||
| 1guy_A | 309 | Structural Basis For Thermophilic Protein Stability | 9e-07 | ||
| 1uxh_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-06 | ||
| 1ur5_A | 309 | Stabilization Of A Tetrameric Malate Dehydrogenase | 2e-06 | ||
| 1uxi_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-06 | ||
| 3gvh_A | 324 | Crystal Structure Of LactateMALATE DEHYDROGENASE FR | 2e-06 | ||
| 1y6j_A | 318 | L-Lactate Dehydrogenase From Clostridium Thermocell | 2e-06 | ||
| 1gv1_A | 310 | Structural Basis For Thermophilic Protein Stability | 7e-06 | ||
| 1sov_A | 328 | Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap | 1e-05 | ||
| 3czm_A | 326 | T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex | 2e-05 | ||
| 1guz_A | 310 | Structural Basis For Thermophilic Protein Stability | 2e-05 | ||
| 3p7m_A | 321 | Structure Of Putative Lactate Dehydrogenase From Fr | 2e-05 | ||
| 4e0b_A | 313 | 2.17 Angstrom Resolution Crystal Structure Of Malat | 6e-05 | ||
| 1pzg_A | 331 | T.Gondii Ldh1 Complexed With Apad And Sulfate At 1. | 4e-04 | ||
| 3vku_A | 326 | Penta Mutant Of Lactobacillus Casei Lactate Dehydro | 5e-04 | ||
| 1i10_A | 331 | Human Muscle L-Lactate Dehydrogenase M Chain, Terna | 5e-04 | ||
| 4ajp_A | 337 | Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl- | 5e-04 | ||
| 1pze_A | 331 | T.gondii Ldh1 Apo Form Length = 331 | 6e-04 | ||
| 3om9_A | 329 | T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex | 7e-04 |
| >pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385 | Back alignment and structure |
|
| >pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375 | Back alignment and structure |
|
| >pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327 | Back alignment and structure |
|
| >pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327 | Back alignment and structure |
|
| >pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329 | Back alignment and structure |
|
| >pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333 | Back alignment and structure |
|
| >pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331 | Back alignment and structure |
|
| >pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345 | Back alignment and structure |
|
| >pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343 | Back alignment and structure |
|
| >pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 | Back alignment and structure |
|
| >pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319 | Back alignment and structure |
|
| >pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 | Back alignment and structure |
|
| >pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308 | Back alignment and structure |
|
| >pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 | Back alignment and structure |
|
| >pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 | Back alignment and structure |
|
| >pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 | Back alignment and structure |
|
| >pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318 | Back alignment and structure |
|
| >pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328 | Back alignment and structure |
|
| >pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326 | Back alignment and structure |
|
| >pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 | Back alignment and structure |
|
| >pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313 | Back alignment and structure |
|
| >pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331 | Back alignment and structure |
|
| >pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326 | Back alignment and structure |
|
| >pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331 | Back alignment and structure |
|
| >pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337 | Back alignment and structure |
|
| >pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331 | Back alignment and structure |
|
| >pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 | Back alignment and structure |
|---|
Score = 471 bits (1213), Expect = e-166
Identities = 287/339 (84%), Positives = 312/339 (92%)
Query: 66 DPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPD 125
+ + DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G D
Sbjct: 2 EAPATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQD 61
Query: 126 QPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRG 185
QPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRG
Sbjct: 62 QPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRG 121
Query: 186 PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245
PGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFH
Sbjct: 122 PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFH 181
Query: 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK 305
ALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK K
Sbjct: 182 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTK 241
Query: 306 WLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP 365
WLEE FT T+QKRGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT GNP
Sbjct: 242 WLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 301
Query: 366 YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
YGIAEDIVFSMPCRSKGDGDYEL DV DD+L +RI K
Sbjct: 302 YGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKK 340
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 | Back alignment and structure |
|---|
Score = 419 bits (1080), Expect = e-147
Identities = 155/311 (49%), Positives = 212/311 (68%), Gaps = 3/311 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +RG +I+ G SSAAS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+ +
Sbjct: 241 AANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTAK-DGAYRVVEGLE 298
Query: 394 FDDYLRKRIAK 404
+++ RKR+
Sbjct: 299 INEFARKRMEI 309
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 | Back alignment and structure |
|---|
Score = 418 bits (1077), Expect = e-146
Identities = 145/313 (46%), Positives = 208/313 (66%), Gaps = 5/313 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELED 151
K + +AV+GAAG I LLF++A G++LG DQP+ L+LL +E++ +AL+GV ME++D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
FPLL + +P F+DA+ ALL+GA+PRGPGMER LL+ N QIF QGKA++AV
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
ASRN+KV+VVGNP NTNA I +K+APS+PAKNF A+ RLD NRA Q+A K G +
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
+ +WGNHS T D+ A+I+G VK++I D W + F T+ KRG +I G SSA
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSA 242
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
AS A + +D + V T G W + G+ ++G YGI E ++F P ++ +G+Y++V+
Sbjct: 243 ASAANAAIDHIHDWVLGTA-GKWTTMGIPSDG-SYGIPEGVIFGFPVTTE-NGEYKIVQG 299
Query: 392 VIFDDYLRKRIAK 404
+ D + ++RI
Sbjct: 300 LSIDAFSQERINV 312
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 | Back alignment and structure |
|---|
Score = 411 bits (1058), Expect = e-144
Identities = 138/312 (44%), Positives = 194/312 (62%), Gaps = 5/312 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ IW
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIW 183
Query: 277 GNHSTTQVPDFLNARINGLP----VKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332
GNHS+TQ PD +A++ V E +KD WL+ F T+Q+RG +IK SSA
Sbjct: 184 GNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAM 243
Query: 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV 392
S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P D +++V+ +
Sbjct: 244 SAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGL 302
Query: 393 IFDDYLRKRIAK 404
+D+ R+++
Sbjct: 303 PINDFSREKMDL 314
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 4e-91
Identities = 78/313 (24%), Positives = 131/313 (41%), Gaps = 17/313 (5%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GAAGMI +++ A L P+ L L + LEGVA E+ F
Sbjct: 7 TEEKLTIVGAAGMIGSNMAQTAAMMR-LTPN----LCLY--DPFAVGLEGVAEEIRHCGF 59
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
L + + E DA++ + G PR GM R LL N +I A+ GK + +
Sbjct: 60 EGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
VI++ NP + L+ L + + L LD R + +LA G+ V+N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG---FTETIQKRGGLLIKKWGRSSA 331
+G H A++NG P+ ++I K E + + K G +IK GRSS
Sbjct: 178 TYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSF 237
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
S + ++ +++ + + +G Y N G E I+ +M DG +
Sbjct: 238 QSPSYVSIEMIRAAMGGEAF--RWPAGCYVNV--PGF-EHIMMAMETTITKDGVKHSDIN 292
Query: 392 VIFDDYLRKRIAK 404
+ ++ R + +
Sbjct: 293 QLGNEAERAALKE 305
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 5e-14
Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 25/249 (10%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
G A++L + + K+ G N Y+ E+++ ++ PR PGM R LL IN ++
Sbjct: 43 NGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVM 102
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQLA 260
G+ + N VI + NP + + K + +P K LD R + LA
Sbjct: 103 QTVGEGIKHNCP-NAFVICITNPLDIMVNMLQKFS-GVPDNKIVGMAGVLDSARFRTFLA 160
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ---K 317
+ V +V + G H T VP + + G+ +++++K+ K +E +
Sbjct: 161 DELNVSVQQVQAYVM-GGHGDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRS 219
Query: 318 RGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIA 369
GG ++ SA A+ + + ++ K ++ YG+
Sbjct: 220 GGGEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILP---------CAAKVKAGMYGLD 270
Query: 370 EDIVFSMPC 378
ED+ +P
Sbjct: 271 EDLFVGVPT 279
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 4e-13
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 32/249 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++ +V++ G N Y +++ +++ GA PR PGM R L+ +N
Sbjct: 40 QGKALDLYEASPIEGFDVRVTGTNNYADTANSD--VIVVTSGA-PRKPGMSREDLIKVNA 96
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
I ++ N +I+V NP + + + + P + LD R +
Sbjct: 97 DITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVS-GFPKERVIGQAGVLDAARYRT 154
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+A++AGV + V M + G H VP + I+G+PV E I + L + T +K
Sbjct: 155 FIAMEAGVSVEDVQAMLM-GGHGDEMVPLPRFSCISGIPVSEFIAPDR-LAQIVERT-RK 211
Query: 318 RGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIA 369
GG ++ SA A+ +V+A+ K ++ Y G YG+
Sbjct: 212 GGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMP---------VAAYLTGQ-YGL- 260
Query: 370 EDIVFSMPC 378
DI F +P
Sbjct: 261 NDIYFGVPV 269
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 4e-13
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 39/270 (14%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A K L E L +G A+++ +S L + K+ G N Y +++ ++I
Sbjct: 19 LAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSD--IVIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N I E + + N +IVV NP + + +
Sbjct: 77 AGL-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRS-G 133
Query: 239 IPAKN--FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP 296
+P K LD R + +A++ GV ++ + G H VP + G+P
Sbjct: 134 LP-KERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL-GGHGDAMVPVVKYTTVAGIP 191
Query: 297 VKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTP 348
+ +++ +++ T + G +++ + SA AS+ V +V+++ K ++
Sbjct: 192 ISDLLPAET-IDKLVERT-RNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLP- 248
Query: 349 TPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
V G YGI + +P
Sbjct: 249 --------CAVGLEGQ-YGI-DKTFVGVPV 268
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 5e-13
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 35/253 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + + KI G N YE ++++ ++I G PR P M R+ LL +N
Sbjct: 52 QGKALDLNHCMALIGSPAKIFGENNYEYLQNSD--VVIITAGV-PRKPNMTRSDLLTVNA 108
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + + + IP N LD R +
Sbjct: 109 KIVGSVAENV-GKYCPNAFVICITNPLDAMVYYFKEKS-GIP-ANKVCGMSGVLDSARFR 165
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
C L+ GV VS + + G H +P + I G+ + + ++ K E I+
Sbjct: 166 CNLSRALGVKPSDVSAIVV-GGHGDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIK 224
Query: 317 K-R--GGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
K GG +++ SA A++AV++ A KS++ Y G
Sbjct: 225 KTAFGGGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSVLV---------CSTYLTGQ- 274
Query: 366 YGIAEDIVFSMPC 378
Y + ++ +P
Sbjct: 275 YNV-NNLFVGVPV 286
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 5e-13
Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 32/249 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ ++ + I G + Y D++ +++ G R PGM R L+ N
Sbjct: 48 KGKALDMLEASPVQGFDANIIGTSDYADTADSD--VVVITAGI-ARKPGMSRDDLVATNS 104
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
+I + + + N ++V+ NP + K A P + LD R +
Sbjct: 105 KIMKSITRDIAKHSP-NAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQSGVLDTARFRT 162
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+A + + ++ + G H VP + G+P++ +I + LE T +K
Sbjct: 163 FIAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYAGGIPLETLIPKER-LEAIVERT-RK 219
Query: 318 RGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIA 369
GG ++ G SA A++ V + +A+ + ++ + Y G YG
Sbjct: 220 GGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLP---------AIAYLEGE-YGY- 268
Query: 370 EDIVFSMPC 378
D+ +P
Sbjct: 269 SDLYLGVPV 277
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 6e-13
Identities = 64/295 (21%), Positives = 119/295 (40%), Gaps = 39/295 (13%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GA+G + A L + +++ L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKDLV---------LIGREHSINKLEGLREDIYDALA 53
Query: 155 PLLREVKI---GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ I + ++++ ++ PR GM R L N +I + K
Sbjct: 54 GTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAK--KIA 111
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ K+ V+ NP + L ++ + F T LD R K +A GV D+V
Sbjct: 112 EICDTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKRGGLLIKKWGRSS 330
I G H + VP I G+P+++ + ++E + + +G +I+ G S
Sbjct: 172 TRII-GEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDV-KTKGEQIIRLKG-GS 228
Query: 331 A---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
A+ +++V + K L+T Y +G GI D+ +P
Sbjct: 229 EFGPAAAILNVVRCIVNNEKRLLT---------LSAYVDGEFDGI-RDVCIGVPV 273
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 29/247 (11%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + L +++I G N YE ++ +++ G R PGM R LL+ N
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSD--IVLVTAGI-GRKPGMTREQLLEANA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
A+ + + A A + V++ NP + + K + LD R
Sbjct: 94 NTMADLAEKIKAYAK-DAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGILDSARMAYY 152
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
++ K GV + V+ + + G H P + + G+P++ ++ + +EE +ET
Sbjct: 153 ISQKLGVSFKSVNAIVL-GMHGQKMFPVPRLSSVGGVPLEHLMSKEE-IEEVVSET-VNA 209
Query: 319 GGLLIKKWGRSSA---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAED 371
G + + G SS A+ V V+A+ K + +Y G YG D
Sbjct: 210 GAKITELRGYSSNYGPAAGLVLTVEAIKRDSKRIYP---------YSLYLQGE-YGY-ND 258
Query: 372 IVFSMPC 378
IV +P
Sbjct: 259 IVAEVPA 265
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 36/268 (13%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A + + E + +G A+++ +S + ++ G N Y ED++ + I
Sbjct: 19 VARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSD--VCIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N +I + + + +IVV NP + + + +
Sbjct: 77 AGL-PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP-DSTIIVVANPLDVMTYVAYEAS-G 133
Query: 239 IPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
P + LD R + +A + V V + + G H T VP + G+PV
Sbjct: 134 FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLM-GGHGDTMVPLPRYTTVGGIPV 192
Query: 298 KEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTP 350
++I D + +EE T + GG ++ G S+ + A + +A+ K ++
Sbjct: 193 PQLIDDAR-IEEIVERT-KGAGGEIVDLMGTSAWYAPGAAAAEMTEAILKDNKRILP--- 247
Query: 351 EGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
Y +G YG+ +D+ +P
Sbjct: 248 ------CAAYCDGE-YGL-DDLFIGVPV 267
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 54/253 (21%), Positives = 104/253 (41%), Gaps = 35/253 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G +++ +S + K G N Y E A+ ++I G PR PGM R LL IN
Sbjct: 45 QGKGLDIAESSPVDGFDAKFTGANDYAAIEGAD--VVIVTAGV-PRKPGMSRDDLLGINL 101
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
++ + G + A VI + NP + K + +P + LD R +
Sbjct: 102 KVMEQVGAGIKKYAP-EAFVICITNPLDAMVWALQKFS-GLP-AHKVVGMAGVLDSARFR 158
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
L+ + V + V+ + G H + VP + + G+P+ +++K ++ + IQ
Sbjct: 159 YFLSEEFNVSVEDVTVFVL-GGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQ 217
Query: 317 ---KRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
G ++ SA A++A+ + ++ K ++ +G
Sbjct: 218 RTRDGGAEIVGLLKTGSAFYAPAASAIQMAESYLKDKKRVLP---------VAAQLSGQ- 267
Query: 366 YGIAEDIVFSMPC 378
YG+ +D+ +P
Sbjct: 268 YGV-KDMYVGVPT 279
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 53/253 (20%), Positives = 95/253 (37%), Gaps = 35/253 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ S+ K+ G + Y ++ ++I P P +R+ LL N
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTDDYADISGSD--VVIITASI-PGRPKDDRSELLFGNA 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + K + +P N LD +R +
Sbjct: 99 RILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVS-GLP-HNKVCGMAGVLDSSRFR 155
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A GV VS I G H VP + + G+P+ IK +E E +
Sbjct: 156 TFIAQHFGVNASDVSANVI-GGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVC 214
Query: 317 K-R--GGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
R + +A A+ AV + +A K++V + + +
Sbjct: 215 HTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVP---------CSAFCSNH- 264
Query: 366 YGIAEDIVFSMPC 378
YG+ + I +P
Sbjct: 265 YGV-KGIYMGVPT 276
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 59/251 (23%), Positives = 99/251 (39%), Gaps = 32/251 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++L P KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 47 TKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDAD--LVVITAGA-PQKPGETRLDLVNKNL 102
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+I + N +V NP + K + + + T LD R +
Sbjct: 103 KILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQS 161
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
+A V V + G H T+ P + +A I G+ + E +K H ++E + +
Sbjct: 162 IAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFED 220
Query: 319 ----GGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 367
+IK G + A+ I A+ ++ V P VY +G YG
Sbjct: 221 VRDAAYEIIKLKG--ATFYGIATALARISKAILNDENAVLPL--------SVYMDGQ-YG 269
Query: 368 IAEDIVFSMPC 378
+ DI P
Sbjct: 270 L-NDIYIGTPA 279
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 36/253 (14%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
EG A++L P R I Y + ++ ++I G P+ PG R LL N
Sbjct: 38 AEGDALDLIHGT-PFTRRANIYAGDYADLKGSD--VVIVAAGV-PQKPGETRLQLLGRNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
++ E + ++ + + VIVV NP + LK + P K F + T LD R +
Sbjct: 94 RVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKESGMD--PRKVFGSGTVLDTARLR 150
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A G V I G H ++VP + A I G+P++ + + + + E
Sbjct: 151 TLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFA 209
Query: 317 KR----GGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
++ +I++ G + A + A IV+++ K ++T VY
Sbjct: 210 EKTKRAAYEIIERKGATHYAIALAVA-DIVESIFFDEKRVLT---------LSVYLEDY- 258
Query: 366 YGIAEDIVFSMPC 378
G+ +D+ S+P
Sbjct: 259 LGV-KDLCISVPV 270
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 4e-11
Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 37/255 (14%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
L+G M+L+ L + Y + +++ L+I GA + G R L+ N
Sbjct: 57 LKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSK--LVIITAGA-RQQEGESRLNLVQRNV 113
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKN--FHALTRLDENR 254
IF + S K+++V NP + + K + P KN + LD R
Sbjct: 114 NIFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFP----KNRVIGSGCNLDSAR 168
Query: 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW------LE 308
+ + + GV + G H + VP + + G+ +K + +
Sbjct: 169 FRYLMGERLGVHPLSCHGWVL-GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWK 227
Query: 309 EGFTETIQKRGGLLIKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNG 363
+ + + +IK G +S A + + +++ V P G
Sbjct: 228 DVHKQVVDS-AYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPI--------STMIKG 278
Query: 364 NPYGIAEDIVFSMPC 378
YGI ED+ S+PC
Sbjct: 279 L-YGIKEDVFLSVPC 292
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 56/312 (17%), Positives = 99/312 (31%), Gaps = 42/312 (13%)
Query: 80 LTYDLKAEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSE 136
L L +E +S+ K I V A GM A +L K A E +AL + +
Sbjct: 8 LIGHLATSQEPRSYNK---ITVVGCDAVGMADAISVLMKDLADE-------VALVDVMED 57
Query: 137 RSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195
+ L+G M+LE L KI Y + ++ ++ + G R L+
Sbjct: 58 K----LKGEMMDLEHGS-LFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQ 112
Query: 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255
N IF + S + + K + + + LD R
Sbjct: 113 RNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARF 171
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE-GFTET 314
+ + + GV V I G H + + L + ++ ++ G+T
Sbjct: 172 RYLMGERLGVHSCLVIGWVI-GQHGDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTS- 229
Query: 315 IQKRGGLLIKKWGRSSA-----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPY 366
GL++ + + + V P Y
Sbjct: 230 --WAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPV--------STMVKDF-Y 278
Query: 367 GIAEDIVFSMPC 378
GI +++ S+PC
Sbjct: 279 GIKDNVFLSLPC 290
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 6e-11
Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 24/213 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ A ++ + P+ ++ + DA+ ++I GA + PG R LL+ N
Sbjct: 38 AQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQ--VVILTAGA-NQKPGESRLDLLEKNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
IF E + + + ++V NP + + + AP + T LD R +
Sbjct: 94 DIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP----GQPVIGSGTVLDSARFR 148
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK------DHKWLEEG 310
+A AGV + G H ++V + +A + G+PV + ++ + + +
Sbjct: 149 HLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKI 207
Query: 311 FTETIQKRGGLLIKKWGRSS--AASTAVSIVDA 341
T +I+ + + I +A
Sbjct: 208 DEGTRNA-AASIIEGKRATYYGIGAALARITEA 239
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 60/261 (22%), Positives = 90/261 (34%), Gaps = 36/261 (13%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+AV GA+G I L L L S +L GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLK------------NSPLVSRLTLYDIAHTPGVAADLSHIETR 50
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + + + ++ PR PGM R L + N I A A A
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCP 109
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ + ++ NP N+ K +T LD RA +A G+ +VS
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVS 169
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK-KWGRSS 330
I G+ T +P ++ + T IQ+ G ++K K G S
Sbjct: 170 VPVIGGHAGKTIIPLISQCTPKVDFPQDQL-------STLTGRIQEAGTEVVKAKAGAGS 222
Query: 331 A--------ASTAVSIVDAMK 343
A A S+VDAM
Sbjct: 223 ATLSMAYAGARFVFSLVDAMN 243
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 47/252 (18%), Positives = 89/252 (35%), Gaps = 33/252 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ A ++ + P V + Y E A ++ G + PG R LLD N
Sbjct: 38 AQAHAEDILHAT-PFAHPVWVWAGSYGDLEGAR--AVVLAAGV-AQRPGETRLQLLDRNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
Q+FA+ + + ++V NP + + + P + + T LD R +
Sbjct: 94 QVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYALSGLPPGRVVGSGTILDTARFRAL 152
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW------LEEGFT 312
LA V V + G H ++V + +A++ G+P+ E +
Sbjct: 153 LAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDE 211
Query: 313 ETIQKRGGLLIKKWGRSS---AASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPY 366
+ +I+ G + A A +V A+ + V +T
Sbjct: 212 GVRRA-AYRIIEGKGATYYGIGAGLA-RLVRAILTDEKGVYTV--------SAFTPE-VA 260
Query: 367 GIAEDIVFSMPC 378
G+ ++ S+P
Sbjct: 261 GV-LEVSLSLPR 271
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 54/253 (21%), Positives = 98/253 (38%), Gaps = 35/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G M+L + VK YE +DA+ ++ GA + PG R L++ N
Sbjct: 43 AMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDAD--IVCICAGA-NQKPGETRLELVEKNL 99
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
+IF + A + +V NP + K + P + + T LD R +
Sbjct: 100 KIFKGIVSEVMAS-GFDGIFLVATNPVDILTYATWKFSGLP--KERVIGSGTTLDSARFR 156
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
L+ G V I G H T++P + +A + G+PV E+++ + ++ + I
Sbjct: 157 FMLSEYFGAAPQNVCAHII-GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIV 215
Query: 317 KR----GGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNP 365
+I+K G + A + I A+ ++ + Y +G
Sbjct: 216 DDVKNAAYHIIEKKG--ATYYGVAMSLARITKAILHNENSILTV--------STYLDGQ- 264
Query: 366 YGIAEDIVFSMPC 378
YG +D+ +P
Sbjct: 265 YGA-DDVYIGVPA 276
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 41/259 (15%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI----GAKPRGPGMERAG----- 192
EG A++L + V + YE A + G + PG +
Sbjct: 47 EGKALDLSHVTSVVDTNVSVRAEYSYE--AALTGADCVIVTAGL-TKVPGKPDSEWSRND 103
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRL 250
LL N +I E G+ + +IVV NP + + + + +P N L
Sbjct: 104 LLPFNSKIIREIGQNIKK-YCPKTFIIVVTNPLDCMVKVMCEAS-GVP-TNMICGMACML 160
Query: 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG 310
D R + +A V V I G H VP +NG P+++ IKD E+
Sbjct: 161 DSGRFRRYVADALSVSPRDVQATVI-GTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 219
Query: 311 FTETIQ---KRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGV 359
E + GG +++ G+ SA A++AV++ + K ++ V
Sbjct: 220 LEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIP---------CSV 270
Query: 360 YTNGNPYGIAEDIVFSMPC 378
Y NG YG+ +D+ +P
Sbjct: 271 YCNGE-YGL-KDMFIGLPA 287
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 36/261 (13%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+A+ GAAG I L + + L S L GV ++
Sbjct: 11 VAILGAAGGIGQPLAMLMK------------MNPLVSVLHLYDVVNAPGVTADISHMDTG 58
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + ++ PR PGM R L IN I + + A
Sbjct: 59 AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGI-AKCCP 117
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
V ++ NP N+ A K A + K +T LD RA +A G+ V
Sbjct: 118 RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVD 177
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK-KWGRSS 330
+ G+ T +P ++ + + T+ IQ G +++ K G S
Sbjct: 178 VPVVGGHAGVTILP-----LLSQVKPPSSFTQEEI--SYLTDRIQNGGTEVVEAKAGAGS 230
Query: 331 A--------ASTAVSIVDAMK 343
A A + + ++
Sbjct: 231 ATLSMAYAAVKFADACLRGLR 251
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 4e-10
Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 31/251 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM+ + V I Y+ DA L++ GA + PG R L+D N
Sbjct: 44 AIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDA--DLVVICAGA-NQKPGETRLDLVDKNI 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
IF +++ A +V NP + K + + + T LD R +
Sbjct: 101 AIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
L V V I G H T++P + A I +P++++++ + E I
Sbjct: 160 LGEYFSVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 319 ----GGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 367
+I+K G + A + A+ ++ + Y +G YG
Sbjct: 219 VRDAAYQIIEKKG--ATYYGIAMGLARVTRAILHNENAILTV--------SAYLDGL-YG 267
Query: 368 IAEDIVFSMPC 378
D+ +P
Sbjct: 268 E-RDVYIGVPA 277
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 52/256 (20%), Positives = 89/256 (34%), Gaps = 38/256 (14%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGM-----ERAGL 193
G A++ + K+ G N Y+ A+ ++I G + PG R L
Sbjct: 42 HGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD--VVIVTAGF-TKAPGKSDKEWNRDDL 98
Query: 194 LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLD 251
L +N +I E G + N +IVV NP + + +++ +P KN LD
Sbjct: 99 LPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDVMVQLLHQHS-GVP-KNKIIGLGGVLD 155
Query: 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGF 311
+R K ++ K V V+ + G H V + G+P++E I + +
Sbjct: 156 TSRLKYYISQKLNVCPRDVNAHIV-GAHGNKMVLLKRYITVGGIPLQEFINNKLISDAEL 214
Query: 312 TETIQ--KRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTN 362
L I S A+ + + ++ K ++
Sbjct: 215 EAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLI---------CSTLLE 265
Query: 363 GNPYGIAEDIVFSMPC 378
G YG DI P
Sbjct: 266 GQ-YGH-SDIFGGTPV 279
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 5e-10
Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ G M+L+ + V++ Y DA L++ GA + PG R L+ N
Sbjct: 44 VRGDVMDLKHATPYSPTTVRVKAGEYSDCHDA--DLVVICAGA-AQKPGETRLDLVSKNL 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+IF + A + +V NP + A K + + + T LD R +
Sbjct: 101 KIFKSIVGEVMAS-KFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ-- 316
L+ V V I G H T++P + +A I G P+K +++ + +
Sbjct: 160 LSEAFDVAPRSVDAQII-GEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQT 218
Query: 317 -KRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 368
+I+ G + A I +A+ + V G Y
Sbjct: 219 RDAAYDIIQAKG--ATYYGVAMGLARITEAIFRNEDAVLTV--------SALLEGE-YEE 267
Query: 369 AEDIVFSMPC 378
ED+ +P
Sbjct: 268 -EDVYIGVPA 276
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 6e-10
Identities = 54/297 (18%), Positives = 101/297 (34%), Gaps = 51/297 (17%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
++V GAAG + ++ + A EV+ D P G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDT---------VGQAADTNHGI- 52
Query: 155 PLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
++ YE ++ +++ G PR PG R L N I + +L+
Sbjct: 53 AYDSNTRVRQGGYEDTAGSD--VVVITAGI-PRQPGQTRIDLAGDNAPIMEDIQSSLDEH 109
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQLALKAGVFYDK 269
+ + + NP + + A + RLD R + L+ +
Sbjct: 110 -NDDYISLTTSNPVDLLNRHLYE-AGDRS-REQVIGFGGRLDSARFRYVLSEEFDAPVQN 166
Query: 270 VSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRS 329
V + G H QVP F ++G + E+ + Q+ +I++ G
Sbjct: 167 VEGTIL-GEHGDAQVPVFSKVSVDGTDPEF---SGDEKEQLLGDL-QESAMDVIERKG-- 219
Query: 330 SA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
+ A +V+A+ ++ + V G +G ED F +P
Sbjct: 220 ATEWGPARGVAHMVEAILHDTGEVLP---------ASVKLEGE-FGH-EDTAFGVPV 265
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 8e-10
Identities = 66/265 (24%), Positives = 99/265 (37%), Gaps = 46/265 (17%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSL----QALEGVAM 147
+ +AV GAAG I G Q +AL L GSE SL GVA+
Sbjct: 1 MKVAVLGAAGGI--------------G--QALALLLKTQLPSGSELSLYDIAPVTPGVAV 44
Query: 148 ELEDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
+L S P ++K G + E A+ L+ R PGM+R+ L ++N I
Sbjct: 45 DL--SHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV 102
Query: 206 KALNAVASRNVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + A + ++ NP NT A LK A +T LD R+ +A
Sbjct: 103 QQV-AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAEL 161
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLL 322
G +V I G+ T +P +E+ T+ IQ G +
Sbjct: 162 KGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEV--------ADLTKRIQNAGTEV 213
Query: 323 IK-KWGRSSA----ASTAVSIVDAM 342
++ K G SA A ++
Sbjct: 214 VEAKAGGGSATLSMGQAAARFGLSL 238
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 57/265 (21%), Positives = 102/265 (38%), Gaps = 35/265 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++LED+ KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 43 TKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDAD--LVVITAGA-PQKPGESRLDLVNKNL 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I + K + + +V NP + K + + + T LD +R +
Sbjct: 99 NILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVA 157
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ-- 316
L + V V + G H ++ + A I PV+++ K+ ++ +
Sbjct: 158 LGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGV 216
Query: 317 -KRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 368
+ +I G + + + I A+ ++ V P G Y +G YG+
Sbjct: 217 RNKAYDIINLKG--ATFYGIGTALMRISKAILRDENAVLPV--------GAYMDG-QYGL 265
Query: 369 AEDIVFSMPCRSKGDGDYELVKDVI 393
DI P G G +K +I
Sbjct: 266 -NDIYIGTPAIIGGTG----LKQII 285
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 35/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM++ L P + ++ + Y +D + +++ GA R PG R L N
Sbjct: 45 AIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCD--VIVVTAGA-NRKPGETRLDLAKKNV 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I E + + + ++VV NP + + K + K + T LD R +
Sbjct: 101 MIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW------LEEGFT 312
L+ K GV V I G H +Q+P + I G + E I D K ++
Sbjct: 160 LSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAE 218
Query: 313 ETIQKRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
+ G +IK G + A S +IV+ + ++ T G NG
Sbjct: 219 DVKTA-GATIIKNKGATYYGIAVSIN-TIVETLLKNQNTIRT---------VGTVINGM- 266
Query: 366 YGIAEDIVFSMPC 378
YGI ED+ S+P
Sbjct: 267 YGI-EDVAISLPS 278
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 45/301 (14%), Positives = 84/301 (27%), Gaps = 52/301 (17%)
Query: 86 AEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL 142
A E K+ K I V G G+ + K A ++ D +
Sbjct: 7 ANHENKTVNK---ITVVGGGELGIACTLAISAKGIADRLVLLDLS------------EGT 51
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G M+LE P ++ ++ G ++ N +F
Sbjct: 52 KGATMDLEIFNLP----NVEISKDLSASAHSK-VVIFTVNSLGSSQSYLDVVQSNVDMFR 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
AL S++ ++V P + K + + LD R + +
Sbjct: 107 ALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNV 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLL 322
I G +V + + + R L
Sbjct: 166 LKAQTSGKEVWVI-GEQGEDKVLTWSGQ--EEVVSHTSQVQ-----------LSNRAMEL 211
Query: 323 IKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP 377
++ G+ S + + +VD++ K V G Y I ++ S+P
Sbjct: 212 LRVKGQRSWSVGLSVADMVDSIVNNKKKVHSV--------SALAKGY-YDINSEVFLSLP 262
Query: 378 C 378
C
Sbjct: 263 C 263
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 6e-09
Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 33/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
+E ++++ V I G + E+ DA+ +++ G + PG R L+
Sbjct: 45 VEAEVLDMQHGS-SFYPTVSIDGSDDPEICRDAD--MVVITAGP-RQKPGQSRLELVGAT 100
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257
I L V + N +++ NP + + K + F + T LD R +
Sbjct: 101 VNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRF 159
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HKWLEEGFTETI 315
+A + GV V G H ++VP + +A I G+P+ + H L+ E I
Sbjct: 160 LIAQQTGVNVKNVHAYIA-GEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEI 218
Query: 316 QKR----GGLLIKKWGRSS--AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
+ +I G ++ + V I++A+ ++
Sbjct: 219 HQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILP---------VSSMLKDF- 268
Query: 366 YGIAEDIVFSMPC 378
+GI DI S+P
Sbjct: 269 HGI-SDICMSVPT 280
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 12/208 (5%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEW----ALLIGAKPRGPGMERAGLLDIN 197
++ ++ +D++ L I IN + DA+ I + P +R L
Sbjct: 39 VKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFT 98
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRA 255
+ G L + ++V+ NP + + P K T LD R
Sbjct: 99 SSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVTGFP--AHKVIGTGTLLDTARM 155
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ + + VS + G H +Q + R+ G P+ + E
Sbjct: 156 QRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEA 214
Query: 316 QKRGGLLIKKWGRSSA--ASTAVSIVDA 341
+K G ++ G +S A++A+ I A
Sbjct: 215 RKGGFTVLNGKGYTSYGVATSAIRIAKA 242
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 6e-07
Identities = 51/249 (20%), Positives = 87/249 (34%), Gaps = 42/249 (16%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
G AM+L + + + KI G Y L + +E +++ G R PGM R L N
Sbjct: 38 AVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSE--IIVVTAGL-ARKPGMTRLDLAHKN 94
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRA 255
I + K + + K++VV NP + I K P +N F +LD R
Sbjct: 95 AGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWK-ESGKP-RNEVFGMGNQLDSQRL 151
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
K +L + I G H + A +G E + +
Sbjct: 152 KERLYNAGAR---NIRRAWIIGEHGDSMFVAKSLADFDGEVDWEAV---------ENDVR 199
Query: 316 QKRGGLLIKKWGR------SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 369
+IK+ G + ++V+ ++ + + G YGI
Sbjct: 200 FV-AAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIP---------TSMILQGE-YGI- 247
Query: 370 EDIVFSMPC 378
E++ +P
Sbjct: 248 ENVAVGVPA 256
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 405 | |||
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 100.0 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 100.0 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 100.0 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 100.0 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 100.0 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 100.0 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 100.0 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 100.0 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 100.0 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 100.0 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 100.0 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 100.0 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 100.0 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 100.0 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 100.0 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 100.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 100.0 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 100.0 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 100.0 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 100.0 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 100.0 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 100.0 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 100.0 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 100.0 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 100.0 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 100.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 100.0 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 100.0 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 100.0 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 100.0 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 100.0 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 100.0 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 100.0 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 100.0 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 100.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 100.0 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 100.0 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 100.0 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 100.0 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 100.0 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 100.0 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 100.0 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 100.0 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.3 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.16 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.16 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.15 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.1 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.08 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.03 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.0 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.94 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 97.93 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 97.92 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 97.91 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.9 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.9 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 97.89 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 97.84 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.84 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 97.82 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.8 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.78 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.75 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.74 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.7 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.7 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.7 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.69 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.69 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.68 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 97.65 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.65 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.63 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.62 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.6 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.59 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.58 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.57 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.55 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.55 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.54 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.51 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 97.51 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.49 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.47 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.46 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.45 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.44 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.44 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.43 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.41 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.4 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.39 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.38 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.37 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 97.37 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 97.37 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 97.36 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.35 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 97.34 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 97.33 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.32 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.32 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.31 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.3 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.3 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.28 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.26 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.25 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.22 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.22 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.21 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.2 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.2 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.19 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 97.18 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.17 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.16 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.14 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 97.12 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.11 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.1 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.1 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.09 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 97.07 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.05 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.03 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.99 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 96.98 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.94 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 96.94 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.94 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 96.89 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.88 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 96.87 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 96.87 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 96.85 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 96.81 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.8 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 96.8 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 96.76 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 96.75 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 96.75 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 96.75 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.74 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.73 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.71 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 96.71 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.7 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 96.7 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.7 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.69 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 96.68 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.67 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.66 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.66 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 96.65 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.63 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 96.6 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.56 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 96.54 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 96.52 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 96.49 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 96.49 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.49 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 96.48 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 96.48 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.47 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 96.47 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.47 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 96.44 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.43 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.43 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 96.42 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.41 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 96.4 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 96.39 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 96.37 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.36 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.35 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 96.34 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 96.33 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.32 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 96.31 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.31 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.31 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 96.3 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.29 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.28 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.27 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.27 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 96.27 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 96.26 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 96.25 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 96.24 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 96.24 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 96.24 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 96.23 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 96.21 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 96.21 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 96.19 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 96.19 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 96.19 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 96.19 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 96.18 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 96.15 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.15 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 96.14 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.13 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 96.12 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 96.12 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 96.11 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.11 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 96.09 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 96.08 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 96.08 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.08 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.08 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 96.07 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.06 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.06 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 96.05 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 96.05 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 96.04 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 96.04 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 96.04 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 96.04 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.04 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 96.03 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 96.02 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 96.01 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 96.01 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.01 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 96.01 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 96.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 96.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 96.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 95.99 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.99 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 95.99 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.99 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 95.99 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 95.98 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 95.98 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 95.98 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.97 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 95.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.95 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 95.95 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 95.94 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 95.93 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.93 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.92 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.91 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 95.91 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 95.91 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 95.9 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 95.9 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 95.89 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 95.89 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.89 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.88 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 95.87 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 95.87 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.85 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.82 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.81 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 95.81 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 95.8 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 95.8 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 95.79 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 95.79 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 95.78 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 95.78 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.76 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 95.76 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 95.75 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.73 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 95.72 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 95.72 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 95.71 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 95.71 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 95.71 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 95.71 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.71 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 95.69 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 95.69 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 95.69 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.68 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 95.68 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.67 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.66 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.65 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.65 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 95.64 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.64 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 95.63 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.62 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.61 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 95.61 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 95.6 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.6 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 95.58 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 95.58 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.58 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.58 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 95.56 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 95.55 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 95.54 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 95.53 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.53 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.52 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 95.51 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 95.51 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 95.49 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 95.49 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 95.48 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.47 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 95.47 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 95.43 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 95.43 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 95.43 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 95.42 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.42 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.42 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 95.41 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 95.41 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.41 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 95.4 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 95.4 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 95.4 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.39 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.39 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 95.38 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 95.37 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.37 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.35 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 95.34 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 95.33 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 95.33 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 95.33 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 95.33 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 95.33 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 95.32 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.31 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 95.31 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 95.31 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.29 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 95.28 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 95.28 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 95.28 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 95.27 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 95.26 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 95.26 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 95.25 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.23 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 95.22 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.22 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.22 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 94.2 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 95.2 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 95.18 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 95.17 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 95.15 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 95.14 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 95.13 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 95.13 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 95.12 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.12 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 95.1 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 95.07 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 95.06 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.05 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 95.05 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 95.04 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 95.03 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 95.02 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 95.02 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 95.01 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.99 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 94.98 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 94.94 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 94.94 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 94.88 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 94.86 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 94.85 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.85 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 94.83 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 94.83 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 94.82 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 94.82 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 94.81 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.79 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 94.78 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 94.78 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 94.77 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 94.77 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 94.76 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 94.75 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.74 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 94.74 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 94.73 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 94.72 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 94.7 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 94.69 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 94.67 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 94.66 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 94.66 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 94.65 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 94.61 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 94.59 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 94.58 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 94.54 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 94.51 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 94.51 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 94.46 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.41 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 94.36 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 94.36 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 94.3 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.27 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 94.27 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 94.23 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.22 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 94.21 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 94.2 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 94.16 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 94.1 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.08 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 94.05 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 94.02 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 94.01 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 94.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 93.99 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 93.97 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 93.94 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 93.93 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 93.92 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 93.88 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 93.85 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.78 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 93.78 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 93.76 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 93.76 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 93.75 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 93.71 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.71 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.68 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 93.68 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 93.63 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 93.63 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 93.63 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 93.61 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 93.55 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 93.55 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 93.53 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 93.5 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 93.5 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 93.49 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 93.49 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 93.43 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 93.41 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 93.32 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 93.31 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 93.28 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 93.2 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 93.16 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 93.15 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 93.15 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 93.05 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 93.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 92.99 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 92.9 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 92.9 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 92.88 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 92.79 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 92.79 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 92.74 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 92.73 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 92.73 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 92.73 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 92.63 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 92.62 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 92.6 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 92.58 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 92.57 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 92.56 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.55 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 92.52 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 92.49 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 92.48 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 92.43 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 92.43 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 92.4 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 92.35 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 92.3 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 92.25 |
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-82 Score=635.57 Aligned_cols=337 Identities=85% Similarity=1.342 Sum_probs=306.7
Q ss_pred cCCCCCcceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH
Q 015501 68 KSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM 147 (405)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~ 147 (405)
+.+..+||||||++|++.+|.+.++|++++||+||||+|+||+++++.|+.++++++++++.|+|+++|.++++++|++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~am 83 (375)
T 7mdh_A 4 PATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM 83 (375)
T ss_dssp -----CCCGGGCC------------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH
T ss_pred ccccccceeEEEEEeechhhhhHhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHH
Confidence 34568999999999999999999999999999999988999999999999999999989999999999999999999999
Q ss_pred HhhhhcCCCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 148 ELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 148 DL~d~~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
||+|+.+++..++++++++|++++|||+||+++|.||+|||+|.||+.+|++|++++++.|.++++|+++||++|||+|+
T Consensus 84 DL~h~~~p~~~~v~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~ 163 (375)
T 7mdh_A 84 ELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163 (375)
T ss_dssp HHHTTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred hHHhhhhhhcCCcEEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhH
Confidence 99999877878888999999999999999999999999999999999999999999999999985599999999999999
Q ss_pred HHHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc
Q 015501 228 NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307 (405)
Q Consensus 228 ~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~ 307 (405)
+|++++|+++.+|+|+||+||.||++||+++||+++|++|++|++++||||||++|||+||+++|+|+|+.+++.+++|.
T Consensus 164 ~t~ia~k~sg~~~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V~G~pl~~~~~~~~~~ 243 (375)
T 7mdh_A 164 NALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 243 (375)
T ss_dssp HHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCHHHH
T ss_pred HHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCCceeeeeecccCCCEEhhHhccchhhH
Confidence 99999999988888999999999999999999999999999999878999999999999999999999999998777788
Q ss_pred HHHHHHHHHhhhHHHHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCcee
Q 015501 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYE 387 (405)
Q Consensus 308 ~~el~~~v~~~~~~ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~ 387 (405)
.++|.+.|+++|++|++.||.++++++|.+++++|++|+.|+|+++|+|+|++++|++||+|+|+|||+||++|++|+++
T Consensus 244 ~~~i~~~v~~~g~eII~~kG~ts~a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~ 323 (375)
T 7mdh_A 244 EEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYE 323 (375)
T ss_dssp HHHHHHHHHTHHHHHHHHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEE
Confidence 88999999999999999999999999999999999999988899999999999999559999999999999999999999
Q ss_pred eecCCCCCHHHHHHHhh
Q 015501 388 LVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 388 iv~~~~L~~~E~~~l~~ 404 (405)
++++++|+++|+++|++
T Consensus 324 iv~~l~L~~~E~~~l~~ 340 (375)
T 7mdh_A 324 LATDVSNDDFLWERIKK 340 (375)
T ss_dssp ECCCCCCCHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHH
Confidence 99669999999999975
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-67 Score=524.87 Aligned_cols=309 Identities=44% Similarity=0.716 Sum_probs=281.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
++++||+|+||+|+||+++++.|+.++++++++++.|+|+|++.+.++++|+++||+|+.+++...+.++.++|++++||
T Consensus 1 ~~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~da 80 (333)
T 5mdh_A 1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL 80 (333)
T ss_dssp CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCC
Confidence 35789999998899999999999999999988999999988776678999999999998767777788888899999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCe-EEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV-KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a-~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs 252 (405)
|+||+++|.||+|||+|.|++.+|+++++++++.+++++ |++ |+|++|||+|++|++++|+++++|+++||++|.||+
T Consensus 81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~-~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs 159 (333)
T 5mdh_A 81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYA-KKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDH 159 (333)
T ss_dssp SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHS-CTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHH
Confidence 999999999999999999999999999999999999997 887 799999999999999999998888899999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceE--cCcc--hHhhhhhccccHHHHHHHHHhhhHHHHHhcCC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI--NGLP--VKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I--~G~p--~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~ 328 (405)
+|++++||+++|++|++|++++||||||++|||+||+++| +|.| +.+++.+++|..+++.++++++|++|++.||.
T Consensus 160 ~R~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k~~ 239 (333)
T 5mdh_A 160 NRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKL 239 (333)
T ss_dssp HHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHHccCc
Confidence 9999999999999999999855799999999999999986 6875 45777766788889999999999999998887
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+++++.|..+++++++|+.+.++++|+|+|++++|++||+|+|+|||+||++ ++|+++++++++|+++|+++|++
T Consensus 240 ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~l~~ 314 (333)
T 5mdh_A 240 SSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREKMDL 314 (333)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHHHHH
Confidence 6666688899999999996544678999999999966999889999999999 99999999669999999999975
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-67 Score=523.94 Aligned_cols=308 Identities=45% Similarity=0.723 Sum_probs=275.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.++.||+|+||+|+||+++++.|+++++++.++++.|.|+|++...++++|++|||+|+.+++...+.+++++|++++||
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~a 101 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGV 101 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCC
Confidence 44689999998899999999999999999988888999998888778899999999999988888888999999999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCC-CCCCceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS-IPAKNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~-~~~k~ig~gt~LDs 252 (405)
|+||+++|.||||||+|.||+.+|++|++++++.|.++|+|+++|+++|||+|++++++++++++ +++|+||++|.||+
T Consensus 102 dvVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~~t~LDs 181 (345)
T 4h7p_A 102 AIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDH 181 (345)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEECCHHHH
T ss_pred CEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeeeccchhH
Confidence 99999999999999999999999999999999999999878999999999999999999887655 55699999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHH
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~ 332 (405)
+|++++||+++|+++++|++++||||||++|||+||+++|+|+|+.+++.+ +|..+++.+.++++|++|++.||.+++.
T Consensus 182 ~R~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v~g~~~~~~~~~-~~~~~~~~~~v~~~g~eIi~~kg~ss~~ 260 (345)
T 4h7p_A 182 NRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKD-DALDDDFVQVVRGRGAEIIQLRGLSSAM 260 (345)
T ss_dssp HHHHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEETTEEGGGGCCC-------HHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHHHCcChhheecceeecCCCCeEEeeeccceECCccHHHhcch-hhHHHHHHHHHHhhhhhhhhcCCCcchh
Confidence 999999999999999999987899999999999999999999999998764 4566789999999999999999988877
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeC-CcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTN-GNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 333 s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~-G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.|.++++.+++|+.+.++..+.+++++++ | +||+|+|+|||+||+++ +|.++++++++|+|+||++|++
T Consensus 261 s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g-~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~~e~~~l~~ 331 (345)
T 4h7p_A 261 SAAKAAVDHVHDWIHGTPEGVYVSMGVYSDEN-PYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGDLGKQRLAS 331 (345)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCCEEEEEECTTC-TTCCCSSCEEEEEEEEE-TTEEEECCSCC-----CGGGHH
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEEEeCCC-CcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCHHHHHHHHH
Confidence 899999999999998777888888888885 7 89999999999999998 6888999889999999998875
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-66 Score=509.84 Aligned_cols=293 Identities=22% Similarity=0.319 Sum_probs=252.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
++++||+|||| |+||+++++.|+..+++++ +.| +|+++++++|+++||.|+. ++...+++++++|++++||
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~e---l~l----~D~~~~k~~g~a~DL~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQE---IGI----VDIFKDKTKGDAIDLEDAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE----ECSCHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCe---EEE----EeCChHHHHHHHhhHhhhh-hhcCCcEEEECcHHHhcCC
Confidence 45789999995 9999999999999998753 555 5667889999999999987 5555677788899999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||+++|.||+|||+|.|++.+|++|++++++.|+++| |++|++++|||+|++|++++|.+ ++|+ |+||+||.||+
T Consensus 78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvvtNPvdi~t~~~~k~~-g~p~~rviG~gt~LD~ 155 (326)
T 3vku_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKLS-GFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC----------------CHHHHHHHHHTTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEccCchHHHHHHHHHhc-CCCHHHeeeecccCcH
Confidence 999999999999999999999999999999999999997 99999999999999999999987 5775 88999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhh----ccccHHHHHHHHHhhhHHHHHhcCC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~----~~~~~~el~~~v~~~~~~ii~~~G~ 328 (405)
+|++++||+++|+++++|++ +||||||+++||+||+++|+|+|+.+++.+ .+|..+++.++|+++|++|++.||.
T Consensus 156 ~R~~~~la~~lgv~~~~V~~-~ViGeHGdt~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kG~ 234 (326)
T 3vku_A 156 ARFRQSIAKMVNVDARSVHA-YIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGA 234 (326)
T ss_dssp HHHHHHHHHHHTSCGGGEEC-CEEBSSSTTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHCeE-EEEcCCCCeeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 899999999999999999999999998865 4577889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|+ +|.++++++.+|+ .|+++|+|+|++++| +||+ +|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 235 t~~a-~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~v~~s~P~~lg~~Gv~~iv~-l~L~~~E~~~l~~ 304 (326)
T 3vku_A 235 TFYG-IATALARISKAIL--NDENAVLPLSVYMDG-QYGL-NDIYIGTPAVINRNGIQNILE-IPLTDHEEESMQK 304 (326)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEEE-GGGE-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred chHH-HHHHHHHHHHHHh--cCCCceEEEEeeccC-ccCC-CceEEEEEEEEcCCceEEEec-CCCCHHHHHHHHH
Confidence 9885 6778888888888 578999999999999 7999 499999999999999999996 9999999999975
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-65 Score=505.05 Aligned_cols=295 Identities=20% Similarity=0.323 Sum_probs=268.5
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEecCccccc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELF 170 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal 170 (405)
|.++++||+|||| |.||+++++.|+..+++++ +.| +|+++++++|+++||.|+. ++. ..+++++++|+++
T Consensus 1 m~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~---l~l----~D~~~~k~~g~a~DL~~~~-~~~~~~v~i~~~~~~a~ 71 (326)
T 3pqe_A 1 MNKHVNKVALIGA-GFVGSSYAFALINQGITDE---LVV----IDVNKEKAMGDVMDLNHGK-AFAPQPVKTSYGTYEDC 71 (326)
T ss_dssp -CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE----ECSCHHHHHHHHHHHHHTG-GGSSSCCEEEEECGGGG
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCce---EEE----EecchHHHHHHHHHHHhcc-ccccCCeEEEeCcHHHh
Confidence 4456899999995 9999999999999988653 555 5667889999999999984 654 4566777889999
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecch
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~ 249 (405)
+|||+||+++|.|++||++|.|++.+|++|++++++.+.++| |++|+|++|||+|++|++++|.+ ++|+ |+||+||.
T Consensus 72 ~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~-p~a~vlvvtNPvd~~t~~~~k~~-g~p~~rviG~gt~ 149 (326)
T 3pqe_A 72 KDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASG-FDGIFLVATNPVDILTYATWKFS-GLPKERVIGSGTT 149 (326)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTH
T ss_pred CCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcCChHHHHHHHHHHhc-CCCHHHEEeeccc
Confidence 999999999999999999999999999999999999999997 99999999999999999999987 5775 88999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhh----ccccHHHHHHHHHhhhHHHHHh
Q 015501 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLIKK 325 (405)
Q Consensus 250 LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~----~~~~~~el~~~v~~~~~~ii~~ 325 (405)
||++|++++||+++|+++++|++ +||||||+++||+||+++|+|+|+.+++.+ .+|..++|.++|+++|++|++.
T Consensus 150 LD~~R~~~~la~~lgv~~~~V~~-~V~GeHG~t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~ 228 (326)
T 3pqe_A 150 LDSARFRFMLSEYFGAAPQNVCA-HIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK 228 (326)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHcee-eeeecCCCceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeC
Confidence 99999999999999999999997 899999999999999999999999998865 4577889999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 326 ~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
||.++|+ +|.++++++++|+ .|+++|+|+|++++| +||++ |+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 229 kG~t~~a-~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~v~~s~P~~lg~~Gv~~iv~-l~L~~~E~~~l~~ 301 (326)
T 3pqe_A 229 KGATYYG-VAMSLARITKAIL--HNENSILTVSTYLDG-QYGAD-DVYIGVPAVVNRGGIAGITE-LNLNEKEKEQFLH 301 (326)
T ss_dssp HSCCCHH-HHHHHHHHHHHHH--TTCCEEECCEEEEES-GGGCE-EEEEECCEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred CCCcHHH-HHHHHHHHHHHHh--cCCCcEEEEEEeecc-ccCCC-ceEEEEEEEEcCCceEEEec-CCCCHHHHHHHHH
Confidence 9998886 6788888888888 578999999999999 89995 99999999999999999996 9999999999975
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-64 Score=500.78 Aligned_cols=294 Identities=20% Similarity=0.290 Sum_probs=261.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-CCCcceEEEecCcccccCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFED 172 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~~~eal~d 172 (405)
.+++||+|||| |+||+++++.|+..++..+ +.| +|+++++++|+++||+|+. ++....+ +.+++|++++|
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~e---l~L----~Di~~~~~~g~a~DL~~~~~~~~~~~i-~~~~d~~~~~~ 87 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADE---LAL----VDVIEDKLKGEMMDLQHGSLFLKTPKI-VSSKDYSVTAN 87 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE----ECSCHHHHHHHHHHHHHTGGGCSCCEE-EECSSGGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCce---EEE----EeCChHHHHHHHHhhhhhhhccCCCeE-EEcCCHHHhCC
Confidence 45789999996 9999999999999887542 554 5667789999999999986 2222233 44678999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchhh
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LD 251 (405)
||+||+++|.||+|||+|.|++.+|++|++++++.|+++| |++|++++|||+|++|++++|++ ++|+ |+||+||.||
T Consensus 88 aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvdi~t~~~~k~s-g~p~~rviG~gt~LD 165 (331)
T 4aj2_A 88 SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIVSNPVDILTYVAWKIS-GFPKNRVIGSGCNLD 165 (331)
T ss_dssp EEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHH
T ss_pred CCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHHh-CCCHHHEEeeccccH
Confidence 9999999999999999999999999999999999999997 99999999999999999999998 5776 8899999999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhc-----cccHHHHHHHHHhhhHHHHHhc
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH-----KWLEEGFTETIQKRGGLLIKKW 326 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~-----~~~~~el~~~v~~~~~~ii~~~ 326 (405)
++|++++||+++|+++++|++ +||||||+++||+||+++|+|+|+.+++.+. +...+++.++++++|++|++.|
T Consensus 166 ~~R~~~~la~~lgv~~~~V~~-~ViGeHG~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k 244 (331)
T 4aj2_A 166 SARFRYLMGERLGVHPLSCHG-WVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK 244 (331)
T ss_dssp HHHHHHHHHHHHTSCGGGCBC-CEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHCEE-eEEecCCCceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcC
Confidence 999999999999999999997 8999999999999999999999999886421 1123789999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 327 G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.++|+ +|.++++++.+++ .|++.++|++++++| +||+++|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 245 g~t~~a-~a~a~a~~~~ail--~d~~~~~~vs~~~~g-~ygi~~~v~~s~P~~lg~~Gv~~iv~-l~L~~~E~~~l~~ 317 (331)
T 4aj2_A 245 GYTSWA-IGLSVADLAESIM--KNLRRVHPISTMIKG-LYGIKEDVFLSVPCILGQNGISDVVK-VTLTPDEEARLKK 317 (331)
T ss_dssp SSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT-GGGCCSCCEEEEEEEEETTEEEEEEC-CCCCHHHHHHHHH
T ss_pred CCCchh-HHHHHHHHHHHHH--hCCCCeEEEEEecCC-ccCCcCceEEEEEEEEcCCeeEEEcc-CCCCHHHHHHHHH
Confidence 999884 6777777777777 689999999999999 89998899999999999999999996 9999999999975
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-63 Score=482.46 Aligned_cols=279 Identities=22% Similarity=0.293 Sum_probs=246.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceE-EEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-KIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v-~i~~~~~eal~dADi 175 (405)
|||+|||| |+||+++++.|+.++++++ +.| +|+++++++|+++||+|+...+.... ...+++|++++|||+
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~e---l~L----~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDv 72 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---IAL----VDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEI 72 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---EEE----ECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCE---EEE----EeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCE
Confidence 79999995 9999999999999998864 665 56777899999999999873333332 234678999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~ 255 (405)
||+++|.||||||+|.||+..|++|++++++.+.++| |+++++++|||+|++|++++|.++..++|+||++|.||++||
T Consensus 73 VvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPvd~~t~i~~k~sg~p~~rvig~gT~LDs~R~ 151 (294)
T 2x0j_A 73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRL 151 (294)
T ss_dssp EEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSSCCTTSEEECCHHHHHHHH
T ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcchhhHHhhHHHcCCChhhEEEeeeEEeHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999996555699999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHH
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTA 335 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A 335 (405)
+++|++++++++. + .+||||||++|||+||+++++|.+. .++++++++++|++|++.||.+.|+ +|
T Consensus 152 ~~~l~~~~~~~~~--~-~~V~G~HGdt~vp~~S~~~v~g~~~----------~~~i~~~~~~~g~eIi~~kGst~~a-~a 217 (294)
T 2x0j_A 152 KERLYNAGARNIR--R-AWIIGEHGDSMFVAKSLADFDGEVD----------WEAVENDVRFVAAEVIKRKGATIFG-PA 217 (294)
T ss_dssp HHHHHHTTCEEEC--C-CCEEBCSSTTCEECGGGCCEESCCC----------HHHHHHHHHTHHHHHHHHHSSCCHH-HH
T ss_pred HHHHhhcccCCcc--e-eEEEecCCCcEEEeeeccCCCCchh----------HHHHHHHHhhhheEEEecCcccchh-HH
Confidence 9999999987654 3 4899999999999999999999763 3567788999999999999998874 66
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 336 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 336 ~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.++++++++|+ .|+++++|++++++| +||+ +|+|||+||++|++|+ ++++ ++|+++|+++|++
T Consensus 218 ~a~~~~~~ail--~d~~~v~~~s~~l~g-~yG~-~~v~~s~P~~lg~~Gv-ei~~-l~L~~~E~~~l~~ 280 (294)
T 2x0j_A 218 VAIYRMVKAVV--EDTGEIIPTSMILQG-EYGI-ENVAVGVPAKLGKNGA-EVAD-IKLSDEEIEKLRN 280 (294)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE-EECC-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCcEEEEEEEEec-CCCC-ccEEEEEEEEEeCCEE-EEeC-CCCCHHHHHHHHH
Confidence 66677777777 689999999999999 7999 6999999999999998 5885 9999999999975
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-63 Score=490.11 Aligned_cols=290 Identities=21% Similarity=0.351 Sum_probs=250.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADi 175 (405)
|||+|||| |+||+++++.|+..++++ ++.| +|+++++++|+++||+|+.+....++.+. +++|++++|||+
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~---el~l----~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDv 72 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAK---EVVM----VDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDV 72 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSS---EEEE----ECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---EEEE----EeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCE
Confidence 69999995 999999999999998864 3554 56667889999999999874333334443 588999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R 254 (405)
||+++|.||+|||+|.|++.+|++|++++++.|.++| |++|++++|||+|++|++++|.+ ++|+ |+||+||.||++|
T Consensus 73 Vii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~~-g~p~~rviG~~t~LD~~R 150 (314)
T 3nep_X 73 CIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVANPLDVMTYVAYEAS-GFPTNRVMGMAGVLDTGR 150 (314)
T ss_dssp EEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCSSHHHHHHHHHHHH-TCCGGGEEECCHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecCCchhHHHHHHHHhc-CCChHHEEeecCchHHHH
Confidence 9999999999999999999999999999999999997 99999999999999999999987 5765 8899999999999
Q ss_pred HHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHH
Q 015501 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAST 334 (405)
Q Consensus 255 ~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~ 334 (405)
+++++|+++|+++++|++ +||||||+++||+||+++|+|+|+.+++.++ | .+++.++++++|++|++.||.+.+.++
T Consensus 151 ~~~~la~~lgv~~~~v~~-~ViG~Hg~t~vp~~S~~~v~g~p~~~~~~~~-~-~~~i~~~v~~~g~eIi~~kg~sa~~a~ 227 (314)
T 3nep_X 151 FRSFIAEELDVSVRDVQA-LLMGGHGDTMVPLPRYTTVGGIPVPQLIDDA-R-IEEIVERTKGAGGEIVDLMGTSAWYAP 227 (314)
T ss_dssp HHHHHHHHHTCCGGGEEE-EEEESSGGGEEEEEEEEEETTEEGGGTSCHH-H-HHHHHHHHHTHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHhCcCHHHeEE-EEECCCCCcEEeeeecCeECcEehhhccCHH-H-HHHHHHHHHHhHHHHHhccCCcHHHHH
Confidence 999999999999999996 8999999999999999999999999887543 3 478999999999999998884333457
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 335 A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.++++++.+|+ .|+++|+|+|++++| +||+ +|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 228 a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~lg~~Gv~~v~~-l~L~~~E~~~l~~ 292 (314)
T 3nep_X 228 GAAAAEMTEAIL--KDNKRILPCAAYCDG-EYGL-DDLFIGVPVKLGAGGVEEVIE-VDLDADEKAQLKT 292 (314)
T ss_dssp HHHHHHHHHHHH--HTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCeEEEEEEEecc-ccCC-CceEEEEEEEEeCCEEEEecC-CCCCHHHHHHHHH
Confidence 777777777777 478999999999999 8999 799999999999999999985 9999999999975
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=473.61 Aligned_cols=277 Identities=23% Similarity=0.323 Sum_probs=249.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC--cceEEEecCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~eal~dAD 174 (405)
|||+|||| |.+|+++++.|+..++++ ++.| +|+++++++|+++||.|....+ ..+++.+++ +++++|||
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~---~v~L----~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVD---EIAL----VDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCS---EEEE----ECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---eEEE----EECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCC
Confidence 69999996 999999999999988764 3555 5667788999999999987323 235555555 99999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||+++|.|++|||+|.|++.+|++|++++++.|.++| |++++|++|||+|++|++++|+++ +|+ |+||+||.||++
T Consensus 72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvsNPvd~~t~~~~k~~g-~p~~rviG~gt~LD~~ 149 (294)
T 1oju_A 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESG-KPRNEVFGMGNQLDSQ 149 (294)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSC-CCTTSEEECSHHHHHH
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-CCHHHEeecccccHHH
Confidence 99999999999999999999999999999999999996 999999999999999999999974 664 999999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHH
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s 333 (405)
|++++|| ++|++|++ + ++||||||+++||+||+++|+|.| ..+++.++++++|++|++.||.++|+
T Consensus 150 R~~~~la-~l~v~~~~-~-~~V~G~Hg~t~vp~~s~~~v~g~~----------~~~~~~~~v~~~g~eii~~kG~t~~~- 215 (294)
T 1oju_A 150 RLKERLY-NAGARNIR-R-AWIIGEHGDSMFVAKSLADFDGEV----------DWEAVENDVRFVAAEVIKRKGATIFG- 215 (294)
T ss_dssp HHHHHHH-HTTCBSCC-C-CCEEBCSSTTCEECGGGCCCBSCC----------CHHHHHHHHHTTHHHHHHHHSSCCHH-
T ss_pred HHHHHHH-HhCCCccC-c-eEEEecCCCceeeecccceECCcC----------hHHHHHHHHHHHHHHHHHhcCCcchH-
Confidence 9999999 99999999 7 599999999999999999999998 25789999999999999999987764
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 334 ~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|.++++++.+|+ .|+++|+|+|++++| +||++ |+|||+||++|++|++ ++ +++|+++|+++|++
T Consensus 216 ~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~~~~s~P~~~g~~Gv~-v~-~l~L~~~E~~~l~~ 280 (294)
T 1oju_A 216 PAVAIYRMVKAVV--EDTGEIIPTSMILQG-EYGIE-NVAVGVPAKLGKNGAE-VA-DIKLSDEEIEKLRN 280 (294)
T ss_dssp HHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEE-EC-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCeEEEEEecccc-cCCCC-ceEEEEEEEEeCCEEE-Ee-cCCCCHHHHHHHHH
Confidence 7888888888888 578999999999999 79996 9999999999999999 87 59999999999975
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-62 Score=479.42 Aligned_cols=294 Identities=19% Similarity=0.305 Sum_probs=255.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
|++.+||+|||| |+||+++++.|+..+++++ |.| +|++++++++.++||.|+. ++..+++++.+++++++|
T Consensus 2 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~e---l~L----~Di~~~~~~g~~~dl~~~~-~~~~~~~v~~~~~~a~~~ 72 (318)
T 1ez4_A 2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEE---FVI----VDVVKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKD 72 (318)
T ss_dssp BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE----ECSSHHHHHHHHHHHHGGG-GGSCCCEEEECCGGGGTT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHcCCCCCE---EEE----EeCCchHHHHHHHHHHHHH-HhcCCeEEEECCHHHhCC
Confidence 556689999996 9999999999999988653 554 4567789999999999987 555667777789999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchhh
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LD 251 (405)
||+||++++.|++||++|.|++.+|+++++++++.|+++| |++|+|++|||+|++|++++|.+ ++|+ |+||+||.||
T Consensus 73 aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD 150 (318)
T 1ez4_A 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDILTYATWKFS-GFPKERVIGSGTSLD 150 (318)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCcHHHHHHHHHHHc-CCCHHHEEeccccch
Confidence 9999999999999999999999999999999999999997 99999999999999999999998 5665 8899999999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc---HHHHHHHHHhhhHHHHHhcCC
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~---~~el~~~v~~~~~~ii~~~G~ 328 (405)
++|+++++|+++|+++++|+ ++||||||++++|+||+++++|+|+.+++.+..|. .+++.+.++++++++++.+|.
T Consensus 151 ~~R~~~~la~~lgv~~~~v~-~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~ 229 (318)
T 1ez4_A 151 SSRLRVALGKQFNVDPRSVD-AYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGA 229 (318)
T ss_dssp HHHHHHHHHHHHTCCGGGEE-CCEESSSSSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCcChhHEE-EEEecccCCceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCCCc
Confidence 99999999999999999999 59999999999999999999999999887654453 467888999999999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|+ .|.++++++.+|+ +|++.+++++++++| +||+| |++||+||++|++|++++++ ++|+++|+++|++
T Consensus 230 t~~~-~a~a~~~~~~ai~--~~~~~~~~vs~~~~G-~yg~~-~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l~~ 299 (318)
T 1ez4_A 230 TFYG-IGTALMRISKAIL--RDENAVLPVGAYMDG-QYGLN-DIYIGTPAIIGGTGLKQIIE-SPLSADELKKMQD 299 (318)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred chHH-HHHHHHHHHHHHH--hCCCcEEEEEEeecC-ccCCC-ceEEEEEEEEeCCeeEEEcC-CCCCHHHHHHHHH
Confidence 8774 6677788888887 678999999999999 79997 99999999999999999996 9999999999975
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-62 Score=479.12 Aligned_cols=293 Identities=20% Similarity=0.338 Sum_probs=258.7
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc---ceEEEecCccc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL---REVKIGINPYE 168 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~---~~v~i~~~~~e 168 (405)
|+.+++||+|||| |.+|+++++.|+..++ ++ +.| +|++..+++++|+++||.|+. ++. .+++. +++|+
T Consensus 4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~---v~l--~D~~~~~~~~~g~a~dl~~~~-~~~~~~~~i~~-t~d~~ 74 (315)
T 3tl2_A 4 MTIKRKKVSVIGA-GFTGATTAFLLAQKEL-AD---VVL--VDIPQLENPTKGKALDMLEAS-PVQGFDANIIG-TSDYA 74 (315)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHHTTC-CE---EEE--ECCGGGHHHHHHHHHHHHHHH-HHHTCCCCEEE-ESCGG
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCC-Ce---EEE--EeccchHHHHHHhhhhHHHhh-hhccCCCEEEE-cCCHH
Confidence 5456789999995 9999999999999886 42 544 434322788999999999986 332 23444 35699
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeec
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~g 247 (405)
+++|||+||+++|.||+|||+|.|++.+|++|++++++.+.++| |++|++++|||+|++|++++|.+ ++|+ |+||+|
T Consensus 75 a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsNPvd~~t~~~~k~s-g~p~~rviG~g 152 (315)
T 3tl2_A 75 DTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQS 152 (315)
T ss_dssp GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECC
T ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCChHHHHHHHHHHhc-CCChHHEEeec
Confidence 99999999999999999999999999999999999999999997 99999999999999999999987 5775 889999
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHH--h
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK--K 325 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~--~ 325 (405)
|.||++|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.++ | .++|.++++++|++|++ +
T Consensus 153 t~LD~~R~~~~la~~lgv~~~~v~~-~viG~Hg~t~vp~~S~~~v~g~p~~~~~~~~-~-~~~i~~~v~~~g~eii~~~~ 229 (315)
T 3tl2_A 153 GVLDTARFRTFIAQELNLSVKDITG-FVLGGHGDDMVPLVRYSYAGGIPLETLIPKE-R-LEAIVERTRKGGGEIVGLLG 229 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEC-CEEBCSGGGCEECGGGCEETTEEGGGTSCHH-H-HHHHHHHHHTHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhCcCHHHcee-eEecCCCCcceeecccCeECCEEHHHhCCHH-H-HHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999996 8999999999999999999999999987544 2 46899999999999999 7
Q ss_pred cCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 326 ~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|.+.|+ +|.++++++.+|+ .|+++|+|+|++++| +||+ +|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 230 kgst~~a-~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~~g~~Gv~~v~~-l~L~~~E~~~l~~ 302 (315)
T 3tl2_A 230 NGSAYYA-PAASLVEMTEAIL--KDQRRVLPAIAYLEG-EYGY-SDLYLGVPVILGGNGIEKIIE-LELLADEKEALDR 302 (315)
T ss_dssp SSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred CCcchHH-HHHHHHHHHHHHH--cCCCcEEEEEEeccC-ccCC-CceEEEEEEEEeCCEEEEEcC-CCCCHHHHHHHHH
Confidence 8877764 7888888888888 578999999999999 8999 799999999999999999994 9999999999975
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=478.94 Aligned_cols=291 Identities=21% Similarity=0.302 Sum_probs=253.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (405)
+++||+|||| |.||+++++.|+..++. ++.| +|+++++++|+++||+|+........++. ++++++++||
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~----~v~l----~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~a 74 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLG----DVVL----FDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENS 74 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCC----EEEE----ECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCc----eEEE----EeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCC
Confidence 3579999995 99999999999998863 2444 45666889999999999863222233332 4669999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||+++|.|++|||+|.|++.+|+++++++++.|.++| |++++|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 75 DvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~s-g~p~~rviG~~~~LD~ 152 (321)
T 3p7m_A 75 DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFS-GVPDNKIVGMAGVLDS 152 (321)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEEECHHHHH
T ss_pred CEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhc-CCCHHHEEeeccchHH
Confidence 999999999999999999999999999999999999997 99999999999999999999997 5775 89999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc----HHHHHHHHHhhhHHHHHhcC-
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLIKKWG- 327 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~----~~el~~~v~~~~~~ii~~~G- 327 (405)
+|++++||+++|+++++|+. +||||||+++||+||+++|+|+|+.+++.+ .|. .+++.++++++|++|++.+|
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~-~~~~~~~~~~i~~~v~~~g~eIi~~~g~ 230 (321)
T 3p7m_A 153 ARFRTFLADELNVSVQQVQA-YVMGGHGDTMVPLTKMSNVAGVSLEQLVKE-GKLKQERLDAIVSRTRSGGGEIVALLKT 230 (321)
T ss_dssp HHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECTTTCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcCHHHceE-eeecCcCCceeeeeeeceECCEehhhhccc-cCCCHHHHHHHHHHHHhhhHHHHHhcCC
Confidence 99999999999999999996 899999999999999999999999998742 342 34688889999999998544
Q ss_pred -CchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeC-CcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 328 -RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN-GNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 328 -~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~-G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+.| +.|.++++++.+|+ .|+++|+|+|++++ | +||+++|+|||+||++|++|++++ + ++|+++|+++|++
T Consensus 231 gsa~~-~~a~a~~~~~~ail--~~~~~v~~~s~~~~~g-~ygi~~~v~~s~P~~~g~~Gv~~v-~-l~L~~~E~~~l~~ 303 (321)
T 3p7m_A 231 GSAYY-APAAAGIQMAESFL--KDKKMILPCAAKVKAG-MYGLDEDLFVGVPTEISANGVRPI-E-VEISDKEREQLQV 303 (321)
T ss_dssp SCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEECTT-GGGCSSCEEEEEEEEEETTEEEEC-C-CCCCHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHH--cCCCcEEEEEEEccCc-ccCCCCCeEEEEEEEEcCCEEEEe-C-CCCCHHHHHHHHH
Confidence 4444 57888888888888 57899999999999 8 899988999999999999999998 5 9999999999975
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-61 Score=475.09 Aligned_cols=293 Identities=21% Similarity=0.308 Sum_probs=258.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
++.+||+|||| |+||+++++.|+..++++ +|.| +|++++++++.++||.|+. ++..+++++.+++++++||
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~---el~L----~Di~~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQ---EIGI----VDIFKDKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCS---EEEE----ECSCHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGGGC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCC---EEEE----EeCCchHhHHHHHHHHHHH-HhcCCeEEEECCHHHhCCC
Confidence 34689999996 999999999999998864 3554 4556789999999999987 5556677777899999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||++++.|++||++|.|++.+|+++++++++.|+++| |++|+|++|||+|++|++++|++ ++|+ |+||+||.||+
T Consensus 78 DvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD~ 155 (326)
T 2zqz_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKLS-GFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHHHc-CCCHHHEEEccccchH
Confidence 999999999999999999999999999999999999997 99999999999999999999998 5665 88999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhh-hcccc---HHHHHHHHHhhhHHHHHhcCC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWL---EEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~-~~~~~---~~el~~~v~~~~~~ii~~~G~ 328 (405)
+|++++||+++|+++++|+ ++||||||++++|+||+++++|+|+.+++. +..|. .+++.+.++++++++++.+|.
T Consensus 156 ~R~~~~la~~lgv~~~~v~-~~v~G~HG~t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kG~ 234 (326)
T 2zqz_A 156 ARFRQSIAEMVNVDARSVH-AYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGA 234 (326)
T ss_dssp HHHHHHHHHHHTCCGGGEE-CCEEBSSSTTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCChhheE-EEEecccCCceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcCCC
Confidence 9999999999999999999 599999999999999999999999998875 33353 358889999999999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|+ .|.++++++.+|+ +|++.+++++++++| +||+| |++||+||++|++|++++++ ++|+++|+++|++
T Consensus 235 t~~~-~a~aa~~~~~ai~--~~~~~~~~vsv~~~G-~yg~~-~~~~svP~~ig~~Gv~~i~~-~~L~~~e~~~l~~ 304 (326)
T 2zqz_A 235 TFYG-IATALARISKAIL--NDENAVLPLSVYMDG-QYGLN-DIYIGTPAVINRNGIQNILE-IPLTDHEEESMQK 304 (326)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred cHHH-HHHHHHHHHHHHH--hCCCcEEEEEEeccC-ccCCC-ceEEEEEEEEcCCeeEEEec-CCCCHHHHHHHHH
Confidence 8774 6677888888888 678999999999999 79997 99999999999999999996 9999999999975
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-60 Score=468.79 Aligned_cols=290 Identities=19% Similarity=0.272 Sum_probs=261.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||+|||| |+||+++++.|+..+++++ |.| +|++++++++.++||.|+. ++..+++++.+++++++|||+|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~e---l~L----~Di~~~k~~g~a~dl~~~~-~~~~~~~v~~~~~~a~~~aD~V 71 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVARE---VVL----VDLDRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAV 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE----ECSSHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE----EeCChhHHHHHHHHHHHhH-hhcCCeEEEECCHHHhCCCCEE
Confidence 69999996 9999999999999988753 555 4556789999999999987 5445666666789999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~ 255 (405)
|++++.|++||++|.|++.+|+++++++++.|+++| |++|+|++|||+|++|++++|.+ ++|+ |+||+||.||++|+
T Consensus 72 ii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD~~R~ 149 (310)
T 2xxj_A 72 VLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVATNPVDVMTQVAYALS-GLPPGRVVGSGTILDTARF 149 (310)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-TCCGGGEEECTTHHHHHHH
T ss_pred EECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHHc-CCCHHHEEecCcchhHHHH
Confidence 999999999999999999999999999999999996 99999999999999999999998 5665 88999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc--c---cHHHHHHHHHhhhHHHHHhcCCch
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--W---LEEGFTETIQKRGGLLIKKWGRSS 330 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~--~---~~~el~~~v~~~~~~ii~~~G~~~ 330 (405)
++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+.. | ..+++.++++++++++++.+|.++
T Consensus 150 ~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~ 228 (310)
T 2xxj_A 150 RALLAEYLRVAPQSVHA-YVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATY 228 (310)
T ss_dssp HHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHHSCCC
T ss_pred HHHHHHHhCcCHHHeEE-EEecccCCccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhccCCcH
Confidence 99999999999999996 99999999999999999999999998875432 3 346788899999999999999887
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 331 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 331 ~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|+ .|.++++++.+|+ +|++.+++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 229 ~~-~a~a~~~~~~ai~--~~~~~~~~vs~~~~G-~yg~-~~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l~~ 296 (310)
T 2xxj_A 229 YG-IGAGLARLVRAIL--TDEKGVYTVSAFTPE-VAGV-LEVSLSLPRILGAGGVAGTVY-PSLSPEERAALRR 296 (310)
T ss_dssp HH-HHHHHHHHHHHHH--TTCCEEEEEEEEEEE-ETTE-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHH--cCCCCEEEEEEEEcC-ccCC-ccEEEEEEEEEeCCeeEEEcC-CCCCHHHHHHHHH
Confidence 75 5777888888887 679999999999999 7999 899999999999999999996 9999999999975
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-61 Score=473.44 Aligned_cols=290 Identities=21% Similarity=0.322 Sum_probs=249.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC--cceEEEecCcccccCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~eal~d 172 (405)
+++||+|||| |.||+++++.|+..++. ++.| +|+++++++|+++||+|+.... ..++..+ +++++++|
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~----~v~L----~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t-~d~~a~~~ 75 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKELG----DVVL----FDIAEGTPQGKGLDIAESSPVDGFDAKFTGA-NDYAAIEG 75 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCC----EEEE----ECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-SSGGGGTT
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCC----eEEE----EeCCchhHHHHHHHHhchhhhcCCCCEEEEe-CCHHHHCC
Confidence 4679999996 99999999999998862 2444 4566688999999999986321 2244443 56899999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchhh
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LD 251 (405)
||+||+++|.|++||++|.|++.+|+++++++++.|+++| |++++|++|||+|++|++++|++ ++|+ |+||+||.||
T Consensus 76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~s-g~p~~rviG~~~~LD 153 (324)
T 3gvi_A 76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFS-GLPAHKVVGMAGVLD 153 (324)
T ss_dssp CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHH
T ss_pred CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhc-CCCHHHEEeecCccH
Confidence 9999999999999999999999999999999999999997 99999999999999999999987 5775 8899999999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc----HHHHHHHHHhhhHHHHHhc-
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLIKKW- 326 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~----~~el~~~v~~~~~~ii~~~- 326 (405)
++|++++||+++|+++++|+. +||||||+++||+||+++|+|+|+.+++.+ .|. .+++.++++++|++|++.+
T Consensus 154 ~~R~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~-~~~~~~~~~~i~~~v~~~g~eIi~~~g 231 (324)
T 3gvi_A 154 SARFRYFLSEEFNVSVEDVTV-FVLGGHGDSMVPLARYSTVAGIPLPDLVKM-GWTSQDKLDKIIQRTRDGGAEIVGLLK 231 (324)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCHHHCeE-EEEcCCCCceeeehhhCeECCEEHHHhhhc-cCCCHHHHHHHHHHHHHhHHHHHHhcC
Confidence 999999999999999999996 899999999999999999999999998743 332 3568889999999999854
Q ss_pred -CCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 327 -GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 327 -G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.+.| +.|.++++++.+|+ .|+++|+|+|++++| +||++ |+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 232 kgsa~~-~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~v~~s~P~~~g~~Gv~~v~~-l~L~~~E~~~l~~ 304 (324)
T 3gvi_A 232 TGSAFY-APAASAIQMAESYL--KDKKRVLPVAAQLSG-QYGVK-DMYVGVPTVIGANGVERIIE-IDLDKDEKAQFDK 304 (324)
T ss_dssp SCCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred CCcHHH-HHHHHHHHHHHHHH--cCCCcEEEEEEEecC-ccCCC-ceEEEEEEEEeCCEEEEecC-CCCCHHHHHHHHH
Confidence 44444 57788888888888 678999999999999 79995 99999999999999999995 9999999999975
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-60 Score=467.50 Aligned_cols=308 Identities=46% Similarity=0.804 Sum_probs=274.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecccc--chhhhHHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--RSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d--~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
++++||+||||+|+||+++++.|+..++++.++...+.++|++ ...+++++.++||.|..+++..+++.+++.+++++
T Consensus 3 ~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~ 82 (329)
T 1b8p_A 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK 82 (329)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence 4578999999889999999999999988765444456665544 11678899999999975456667888888899999
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLD 251 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LD 251 (405)
|||+||+++|.+++||++|.+++.+|++++++++++++++|+|++|+|++|||+|++|+++++.++++|+++++++|.||
T Consensus 83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~t~Ld 162 (329)
T 1b8p_A 83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLD 162 (329)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHH
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCCHHHEEEeecHH
Confidence 99999999999999999999999999999999999999995599999999999999999999998788886667779999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchH
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~ 331 (405)
+.|+++++|+++|+++++|+.++||||||++++|+||+++++|+|+.+++.+++|..+++.+++++++++|++.||.+++
T Consensus 163 ~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kg~~~~ 242 (329)
T 1b8p_A 163 HNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSA 242 (329)
T ss_dssp HHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhccCCChH
Confidence 99999999999999999999767899999999999999999999999987655676789999999999999999998888
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++.|.++++.+.+|+.+ ++++|+|++++++| +||+|+|++||+||++ ++|+++++++++|+++|+++|++
T Consensus 243 ~~~a~a~~~~~~ai~~~-~~~~~~~~s~~~~g-~yg~~~~~~~s~P~~i-~~Gv~~i~~~~~l~~~e~~~l~~ 312 (329)
T 1b8p_A 243 ASAANAAIDHIHDWVLG-TAGKWTTMGIPSDG-SYGIPEGVIFGFPVTT-ENGEYKIVQGLSIDAFSQERINV 312 (329)
T ss_dssp HHHHHHHHHHHHHHHHC-CTTCCEEEEEECCS-GGGCCTTCEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-CCCcEEEEEEEecC-ccCCCCCeEEEEEEEE-cCCEEEecCCCCCCHHHHHHHHH
Confidence 87777888888888842 28899999999999 6999999999999999 99999999659999999999975
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-59 Score=464.88 Aligned_cols=292 Identities=20% Similarity=0.291 Sum_probs=261.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~dA 173 (405)
+++||+|||| |+||+++++.|+..+++. ++.| +|++++++++.++||.|+. ++. .+++++.+++++++||
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~---ei~L----~Di~~~~~~g~~~dl~~~~-~~~~~~~~v~~~~~~a~~~a 75 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVD---ELVI----IDLDTEKVRGDVMDLKHAT-PYSPTTVRVKAGEYSDCHDA 75 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCS---EEEE----ECSCHHHHHHHHHHHHHHG-GGSSSCCEEEECCGGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCC---EEEE----EeCChhHhhhhhhhHHhhh-hhcCCCeEEEeCCHHHhCCC
Confidence 4579999996 999999999999988764 3554 4556788999999999985 554 4566666889999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||++++.|++||++|.+++.+|+++++++++.|+++| |++|+|++|||+|++|++++|++ ++|+ |+||+||.||+
T Consensus 76 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~k~~-~~p~~rviG~gt~lD~ 153 (317)
T 3d0o_A 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVATNPVDILAYATWKFS-GLPKERVIGSGTILDS 153 (317)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHHh-CCCHHHEEecCccccH
Confidence 999999999999999999999999999999999999997 99999999999999999999998 5665 88999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccc---cHHHHHHHHHhhhHHHHHhcCCc
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKRGGLLIKKWGRS 329 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~---~~~el~~~v~~~~~~ii~~~G~~ 329 (405)
+|++++||+++|+++++|+ ++||||||++++|+||+++++|+|+.+++.+..| ..+++.+.++++++++++.+|.+
T Consensus 154 ~r~~~~la~~l~v~~~~v~-~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~ 232 (317)
T 3d0o_A 154 ARFRLLLSEAFDVAPRSVD-AQIIGEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGAT 232 (317)
T ss_dssp HHHHHHHHHHHTSCGGGCB-CCEEBCSSTTCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCcChhhEE-EEEEecCCCCeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCCCCc
Confidence 9999999999999999999 5999999999999999999999999988764445 34678889999999999999988
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 330 ~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|+ .|.++++++.+|+ +|++.+++++++++| +||+| |++||+||++|++|++++++ ++|+++|+++|++
T Consensus 233 ~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~~-~~~~~vP~~ig~~Gv~~i~~-~~l~~~e~~~l~~ 301 (317)
T 3d0o_A 233 YYG-VAMGLARITEAIF--RNEDAVLTVSALLEG-EYEEE-DVYIGVPAVINRNGIRNVVE-IPLNDEEQSKFAH 301 (317)
T ss_dssp CHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred hHh-HHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCCC-ceEEEEEEEEeCCeeEEEec-CCCCHHHHHHHHH
Confidence 774 6677788888887 679999999999999 79997 99999999999999999996 9999999999975
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=474.96 Aligned_cols=294 Identities=26% Similarity=0.349 Sum_probs=250.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.+++||+||||+|+||+++++.++..++..+ +.| +|+++++++|+++||+|+.++ ..++.++++.+++++||
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~e---vvL----iDi~~~k~~g~a~DL~~~~~~-~~~i~~t~d~~~al~dA 77 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPN---LCL----YDPFAVGLEGVAEEIRHCGFE-GLNLTFTSDIKEALTDA 77 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSC---EEE----ECSCHHHHHHHHHHHHHHCCT-TCCCEEESCHHHHHTTE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCE---EEE----EeCCchhHHHHHHhhhhCcCC-CCceEEcCCHHHHhCCC
Confidence 3468999999779999999999999887653 655 566778999999999998643 24677777888999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeE-EEEeCCchhHHHHHHHHHCCCCCCCceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK-VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~-vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs 252 (405)
|+||+++|.|++|||+|.|++.+|++|++++++.++++| |+++ ++++|||+|++|++++|+++ +|++.+.++|.||+
T Consensus 78 DvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPvd~~t~i~~k~sg-~p~~rv~g~t~LDs 155 (343)
T 3fi9_A 78 KYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDS 155 (343)
T ss_dssp EEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSHHHHHHHHHHHHT-CCGGGEEEECCHHH
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCchHHHHHHHHHHcC-CCcceEEEecCcHH
Confidence 999999999999999999999999999999999999997 9996 99999999999999999984 77644446789999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccc---cHHHHHHHHHhhhHHHHHhcCCc
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKRGGLLIKKWGRS 329 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~---~~~el~~~v~~~~~~ii~~~G~~ 329 (405)
+|++++||+++|++|++|++++||||||++|||+||+++|+|+|+.+++....+ ..+++.++|+++|++|++.||.+
T Consensus 156 ~R~~~~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~s 235 (343)
T 3fi9_A 156 TRLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRS 235 (343)
T ss_dssp HHHHHHHHHHHTSCGGGEECCCEEESSGGGEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCcCHHHcccceEEEcCCCceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHccCCC
Confidence 999999999999999999866999999999999999999999999988643211 23589999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCC--CCHHHHHHHhh
Q 015501 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI--FDDYLRKRIAK 404 (405)
Q Consensus 330 ~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~--L~~~E~~~l~~ 404 (405)
+|++.|.++++++++|+ .|++.++|+|++++| +| . +|+|||+||++|++|++.+. ++ |+++|+++|++
T Consensus 236 s~~s~A~a~~~~~~ail--~d~~~v~~~s~~~~g-~~-~-~~v~~s~P~~lg~~Gv~~~~--~~~ll~~~E~~~l~~ 305 (343)
T 3fi9_A 236 SFQSPSYVSIEMIRAAM--GGEAFRWPAGCYVNV-PG-F-EHIMMAMETTITKDGVKHSD--INQLGNEAERAALKE 305 (343)
T ss_dssp CCHHHHHHHHHHHHHHT--TSSCCCSCEEEEEEE-TT-E-EEEEEEESEEEETTEEEECC--GGGSSCHHHHHHHHH
T ss_pred cHHhHHHHHHHHHHHHH--hCCCceEEEEEEEeC-CC-c-CceEEEeEEEEeCCceEEEe--cCCCCCHHHHHHHHH
Confidence 88888999999999998 578889999999998 43 3 79999999999999998753 44 89999999975
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-60 Score=465.92 Aligned_cols=295 Identities=24% Similarity=0.346 Sum_probs=249.6
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
|.++++||+|||| |+||+++++.|+..+++++ |.| +|+++++++|.++||.|+. ++..+++++.+++++++
T Consensus 3 m~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~e---v~L----~Di~~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~ 73 (318)
T 1y6j_A 3 MVKSRSKVAIIGA-GFVGASAAFTMALRQTANE---LVL----IDVFKEKAIGEAMDINHGL-PFMGQMSLYAGDYSDVK 73 (318)
T ss_dssp ----CCCEEEECC-SHHHHHHHHHHHHTTCSSE---EEE----ECCC---CCHHHHHHTTSC-CCTTCEEEC--CGGGGT
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE----EeCChHHHHHHHHHHHHhH-HhcCCeEEEECCHHHhC
Confidence 3345789999996 9999999999999988653 554 4556688899999999987 56567777767899999
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~L 250 (405)
|||+||++++.|++||++|.|++.+|+++++++++.|.++| |++|+|++|||+|++|++++|++ ++|+ |+||+||.|
T Consensus 74 ~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~~~~~~k~s-~~p~~rviG~gt~L 151 (318)
T 1y6j_A 74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKWS-GLPVGKVIGSGTVL 151 (318)
T ss_dssp TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECTTHH
T ss_pred CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHHc-CCCHHHEeccCCch
Confidence 99999999999999999999999999999999999999996 99999999999999999999998 5665 889999999
Q ss_pred hHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhc--ccc---HHHHHHHHHhhhHHHHHh
Q 015501 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWL---EEGFTETIQKRGGLLIKK 325 (405)
Q Consensus 251 Ds~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~--~~~---~~el~~~v~~~~~~ii~~ 325 (405)
|++|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+. .|. .+++.+.++++++++++.
T Consensus 152 d~~r~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~ 230 (318)
T 1y6j_A 152 DSIRFRYLLSEKLGVDVKNVHG-YIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKN 230 (318)
T ss_dssp HHHHHHHHHHTTTTCCTTTEEC-CEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHeEE-EEecccCCcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhC
Confidence 9999999999999999999996 9999999999999999999999998876432 233 468999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 326 ~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|.++|+ .|.++++++.+|+ +|++++++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 231 kg~t~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~G-~yg~-~~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l~~ 303 (318)
T 1y6j_A 231 KGATYYG-IAVSINTIVETLL--KNQNTIRTVGTVING-MYGI-EDVAISLPSIVNSEGVQEVLQ-FNLTPEEEEALRF 303 (318)
T ss_dssp TSCCCHH-HHHHHHHHHHHHH--HTCCCEECCEEEECS-BTTB-CSEEEECCEEEETTEEEECCC-CCCCHHHHHHHHH
T ss_pred CCccHHH-HHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCC-cceEEEEEEEEcCCeeEEEec-CCCCHHHHHHHHH
Confidence 9988775 5777778888877 578999999999999 7999 899999999999999999996 8999999999975
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-59 Score=461.59 Aligned_cols=286 Identities=20% Similarity=0.334 Sum_probs=254.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC--cceEEEecCcccccCCCcE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAEW 175 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~eal~dADi 175 (405)
||+|||| |+||+++++.|+..++ ++ +.| +|++++++++.++||.|+.+.. ..+++.+ +++++++|||+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l-~e---l~L----~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~a~~~aD~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY-DD---LLL----IARTPGKPQGEALDLAHAAAELGVDIRISGS-NSYEDMRGSDI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC-SC---EEE----ECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCGGGGTTCSE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC-CE---EEE----EcCChhhHHHHHHHHHHhhhhcCCCeEEEEC-CCHHHhCCCCE
Confidence 7999996 9999999999998887 53 655 4556788999999999975322 2234443 55899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R 254 (405)
||++++.|++|||+|.|++.+|+++++++++.++++| |++|+|++|||+|++|++++|++ ++|+ |+||+||.||++|
T Consensus 71 Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~~-~~p~~rviG~gt~LD~~R 148 (308)
T 2d4a_B 71 VLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPVDAMTYVMYKKT-GFPRERVIGFSGILDSAR 148 (308)
T ss_dssp EEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHHHHH
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhc-CCChhhEEEecccchHHH
Confidence 9999999999999999999999999999999999997 99999999999999999999996 5765 8999999999999
Q ss_pred HHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcC-CchHHH
Q 015501 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWG-RSSAAS 333 (405)
Q Consensus 255 ~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G-~~~~~s 333 (405)
++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.++. .+++.++++++++++++.+| .+.| +
T Consensus 149 ~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~g~eii~~kg~s~~~-~ 224 (308)
T 2d4a_B 149 MAYYISQKLGVSFKSVNA-IVLGMHGQKMFPVPRLSSVGGVPLEHLMSKEE--IEEVVSETVNAGAKITELRGYSSNY-G 224 (308)
T ss_dssp HHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHSCHHH--HHHHHHHHHTHHHHHHHHHSSCCCH-H
T ss_pred HHHHHHHHhCcChhHeEE-EEEeccCCceeeeehhccCCCEEHHHHcCHHH--HHHHHHHHHHhhHhhhhCCCCccHH-H
Confidence 999999999999999996 89999999999999999999999998875543 47899999999999999999 6554 4
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 334 ~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.|.++++++.+|+ +|++++++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 225 ~a~a~~~~~~ai~--~~~~~v~~vs~~~~G-~yg~-~~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l~~ 290 (308)
T 2d4a_B 225 PAAGLVLTVEAIK--RDSKRIYPYSLYLQG-EYGY-NDIVAEVPAVIGKSGIERIIE-LPLTEDEKRKFDE 290 (308)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCcEEEEEEEEcC-ccCC-CceEEEEEEEEcCCceEEecC-CCCCHHHHHHHHH
Confidence 7777777788777 678999999999999 7999 899999999999999999996 9999999999975
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-58 Score=453.22 Aligned_cols=292 Identities=21% Similarity=0.306 Sum_probs=260.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~dA 173 (405)
+++||+|||| |.||+++++.|+..+++++ |.| +|++++++++.++||.|.. ++. .+++++++++++++||
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~e---v~l----~Di~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~~~al~~a 75 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADE---IVL----IDANESKAIGDAMDFNHGK-VFAPKPVDIWHGDYDDCRDA 75 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE----ECSSHHHHHHHHHHHHHHT-TSSSSCCEEEECCGGGTTTC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCE---EEE----EeCCcchHHHHHhhHHHHh-hhcCCCeEEEcCcHHHhCCC
Confidence 4689999996 9999999999998887643 554 4556678999999999976 433 3566667889999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||++++.+++||++|.+++.+|+++++++++.+++++ |++|++++|||+|++|++++|++ ++|+ |+||+||.||+
T Consensus 76 DvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~~~~~~~~~~s-~~p~~rviG~gt~lD~ 153 (316)
T 1ldn_A 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKFS-GLPHERVIGSGTILDT 153 (316)
T ss_dssp SEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHH-TCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchHHHHHHHHHHh-CCCHHHEEecccchHH
Confidence 999999999999999999999999999999999999997 99999999999999999999998 5665 88999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc-cc---HHHHHHHHHhhhHHHHHhcCC
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WL---EEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~-~~---~~el~~~v~~~~~~ii~~~G~ 328 (405)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+.. |. .+++.+.++++++++++.+|.
T Consensus 154 ~r~~~~la~~l~v~~~~v~~-~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~ 232 (316)
T 1ldn_A 154 ARFRFLLGEYFSVAPQNVHA-YIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGA 232 (316)
T ss_dssp HHHHHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHeEE-EEecccCCceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhccCC
Confidence 99999999999999999996 99999999999999999999999988875443 33 367888999999999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|+ .|.++++++.+|+ +|++.+++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 233 ~~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~yg~-~~~~~~vP~~ig~~Gv~~i~~-~~l~~~e~~~l~~ 302 (316)
T 1ldn_A 233 TYYG-IAMGLARVTRAIL--HNENAILTVSAYLDG-LYGE-RDVYIGVPAVINRNGIREVIE-IELNDDEKNRFHH 302 (316)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-TTSC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred cHHH-HHHHHHHHHHHHH--hCCCcEEEEEEEecC-ccCC-cceEEEEEEEEeCCeeEEEcc-CCCCHHHHHHHHH
Confidence 8774 6677788888887 679999999999999 7999 899999999999999999996 9999999999975
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-58 Score=449.74 Aligned_cols=289 Identities=19% Similarity=0.290 Sum_probs=258.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||||+|+||+++++.|+..+++. .+.|+|+..+.++++++++||.|... +..+++++.+++++++|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~-----el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~~~~~a~~~aDvV 74 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV 74 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCS-----EEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEcCCCChhhHHHHHHHHHHHHh-hCCCcEEEeCCHHHhCCCCEE
Confidence 699999988999999999999887643 24444442266788899999999874 555666666679999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~R~ 255 (405)
|++++.|++||++|.+++.+|+++++++++++++++ |++||+++|||+|++|++++|++ ++|+ |+||+||.||++|+
T Consensus 75 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~~~~~-~~p~~rviG~gt~Ld~~r~ 152 (303)
T 1o6z_A 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLNRHLYEAG-DRSREQVIGFGGRLDSARF 152 (303)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHHHHHHHHS-SSCGGGEEECCHHHHHHHH
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHc-CCCHHHeeecccchhHHHH
Confidence 999999999999999999999999999999999996 99999999999999999999998 5665 89999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHHHHH
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTA 335 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~s~A 335 (405)
+++||+++|+++++|+ ++||||||++++|+||+++++|.| +++.++. .+++.++++++++++++.+|.++| +.|
T Consensus 153 ~~~la~~l~v~~~~v~-~~v~G~HG~~~~p~~s~~~v~g~p--~~~~~~~--~~~~~~~v~~~g~eii~~kg~~~~-~~a 226 (303)
T 1o6z_A 153 RYVLSEEFDAPVQNVE-GTILGEHGDAQVPVFSKVSVDGTD--PEFSGDE--KEQLLGDLQESAMDVIERKGATEW-GPA 226 (303)
T ss_dssp HHHHHHHHTCCGGGEE-CCEEECSSTTEEECGGGCEETTBC--CCCCHHH--HHHHHHHHHHHHHHHHTTTSSCCH-HHH
T ss_pred HHHHHHHhCcCHHHeE-EEEEeCCCCccccCCcccccCCcC--ccCCHHH--HHHHHHHHHHHhHHHHhcCCChHH-HHH
Confidence 9999999999999999 599999999999999999999999 6654443 478999999999999999998877 478
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 336 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 336 ~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.++++++++|+ +|++++++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 227 ~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~~P~~ig~~Gv~~i~~-~~l~~~e~~~l~~ 290 (303)
T 1o6z_A 227 RGVAHMVEAIL--HDTGEVLPASVKLEG-EFGH-EDTAFGVPVSLGSNGVEEIVE-WDLDDYEQDLMAD 290 (303)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCEEEEEEecCC-ccCC-cceEEEEEEEEeCCeeEEecC-CCCCHHHHHHHHH
Confidence 88888888888 678999999999999 7999 899999999999999999996 9999999999975
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=464.37 Aligned_cols=277 Identities=17% Similarity=0.215 Sum_probs=245.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-CCCcceEEEecCcccccCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFED 172 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~~~eal~d 172 (405)
++.+||+|||| |.||+++++.|+..+++++ +.| +|+++++++|+++||+|+. +....++.. +++|++++|
T Consensus 19 ~~~~kV~ViGa-G~vG~~~a~~la~~g~~~e---v~L----~Di~~~~~~g~a~DL~~~~~~~~~~~i~~-t~d~~~~~d 89 (330)
T 3ldh_A 19 RSYNKITVVGC-DAVGMADAISVLMKDLADE---VAL----VDVMEDKLKGEMMDLEHGSLFLHTAKIVS-GKDYSVSAG 89 (330)
T ss_dssp CCCCEEEEEST-THHHHHHHHHHHHHCCCSE---EEE----ECSCHHHHHHHHHHHHHHGGGSCCSEEEE-ESSSCSCSS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCe---EEE----EECCHHHHHHHHHHhhhhhhcccCCeEEE-cCCHHHhCC
Confidence 35689999996 9999999999999998753 555 5667789999999999985 222334444 457889999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchhh
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LD 251 (405)
||+||+++|.||+|||+|.|++.+|++|++++++.+.++| |++|++++|||+|++|++++|++ ++|+ |+||+||.||
T Consensus 90 aDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtNPvdi~t~~~~k~s-g~p~~rViG~gt~LD 167 (330)
T 3ldh_A 90 SKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPELGTDKNKQDWKLS-GLPMHRIIGSGCNLD 167 (330)
T ss_dssp CSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-CCCGGGEECCTTHHH
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCCccHHHHHHHHHHh-CCCHHHeecccCchh
Confidence 9999999999999999999999999999999999999996 99999999999999999999998 5775 8899999999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchH
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~ 331 (405)
++|+++++|+++|+++++|++ +||||||+++||+||+ +| .+++.++|+++|++|++.||.++|
T Consensus 168 s~R~~~~lA~~lgv~~~~V~~-~V~G~Hg~t~vp~~S~---------------~~-~~~~~~~v~~~g~eii~~kg~t~~ 230 (330)
T 3ldh_A 168 SARFRYLMGERLGVHSCLVIG-WVIGQHGDSVPSVWSG---------------MW-DAKLHKDVVDSAYEVIKLKGYTSW 230 (330)
T ss_dssp HHHHHHHHHHHHTSCTTTCCE-EECSSSSTTCCEEEEE---------------EE-ETTEEHHHHHCCCTTSTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHeEE-EEEcCCCCceeeechh---------------hH-HHHHHHHHHHHHHHHHHccCCcce
Confidence 999999999999999999996 8999999999999999 12 256788899999999999998877
Q ss_pred HHHHH-----------------HHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCcee--eecCC
Q 015501 332 ASTAV-----------------SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYE--LVKDV 392 (405)
Q Consensus 332 ~s~A~-----------------~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~--iv~~~ 392 (405)
+ +|. ++++++.+++ .|++.|+|+|++++| +||+++|+|||+||++| +|+++ +++ +
T Consensus 231 a-~a~~~~~~~~~~~~~~~~~~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~~~v~~s~P~~lg-~Gv~~~~iv~-~ 304 (330)
T 3ldh_A 231 A-IGLVVSNPVDVLTYVAWKGCSVADLAQTIM--KDLCRVHPVSTMVKD-FYGIKDNVFLSLPCVLN-NGISHCNIVK-M 304 (330)
T ss_dssp H-HHHTTHHHHTTSSSCSCTHHHHHHHHHHHH--HTCCEEECCBCCCSS-SSSCCSCCCCBCCEEEB-TTBCTTCCCC-C
T ss_pred e-eeeeccCccchhhhhhhHHHHHHHHHHHHH--cCCCceEEEEeecCC-ccCCCCceEEEEEEEEC-CcEEEcceec-C
Confidence 4 555 6777777777 578999999999999 79998899999999999 99999 996 9
Q ss_pred CCCHHHHHHHhh
Q 015501 393 IFDDYLRKRIAK 404 (405)
Q Consensus 393 ~L~~~E~~~l~~ 404 (405)
+|+++|+++|++
T Consensus 305 ~L~~~E~~~l~~ 316 (330)
T 3ldh_A 305 KLKPDEEQQLQK 316 (330)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999999975
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-57 Score=444.37 Aligned_cols=282 Identities=23% Similarity=0.269 Sum_probs=237.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dA 173 (405)
|||+||||+|+||+++++.|+++ ++. -.|.|+|+ ++ +++|+++||+|.. +..+++.. +++|++++||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~-----~el~L~Di--~~-~~~G~a~Dl~~~~--~~~~v~~~~~~~~~~~~~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSG-----SELSLYDI--AP-VTPGVAVDLSHIP--TAVKIKGFSGEDATPALEGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT-----EEEEEECS--ST-THHHHHHHHHTSC--SSEEEEEECSSCCHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCC-----ceEEEEec--CC-CchhHHHHhhCCC--CCceEEEecCCCcHHHhCCC
Confidence 69999998899999999999987 553 24555544 43 5789999999974 32344432 4789999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHH---HHHHCCCCCC-Cceeecch
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI---CLKNAPSIPA-KNFHALTR 249 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~---~~k~s~~~~~-k~ig~gt~ 249 (405)
|+||+++|.||+|||+|.|++.+|++|++++++.|.++| |+++++++|||+|++|++ ++|+++.+|+ |+||+| .
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~-~ 148 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-T 148 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECC-H
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEe-c
Confidence 999999999999999999999999999999999999997 999999999999999999 8889866465 889999 9
Q ss_pred hhHHHHHHHHHHHhCCCCCCceeEEEEeec-CCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc--
Q 015501 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW-- 326 (405)
Q Consensus 250 LDs~R~~~~lA~~l~v~~~~V~~~~V~G~H-G~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~-- 326 (405)
||++|++++||+++|+++++|+ ++||||| |+++||+||++ +|.|+. +++ .++|.++|+++|++|++.|
T Consensus 149 LD~~R~~~~la~~lgv~~~~v~-~~V~G~Hsg~t~vp~~S~~--~g~~~~----~~~--~~~i~~~v~~~g~eIi~~k~g 219 (312)
T 3hhp_A 149 LDIIRSNTFVAELKGKQPGEVE-VPVIGGHSGVTILPLLSQV--PGVSFT----EQE--VADLTKRIQNAGTEVVEAKAG 219 (312)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCC-CCEEECSSGGGEEECGGGC--TTCCCC----HHH--HHHHHHHHHTHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHhCcChhHcc-eeEEeccCCCceeeecccC--CCCCCC----HHH--HHHHHHHHHhhhHHHHhhccC
Confidence 9999999999999999999999 5999999 88999999998 787753 222 3789999999999999877
Q ss_pred -CCchHHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 327 -GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 327 -G~~~~~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.+.| ++|.++++++++|+.+ .|++.++|++ +++| + |. +++|||+||++|++|++++++.++|+++|+++|++
T Consensus 220 ~gst~~-s~a~a~~~~~~ai~~~l~~~~~v~~~s-~~~g-~-g~-~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~ 294 (312)
T 3hhp_A 220 GGSATL-SMGQAAARFGLSLVRALQGEQGVVECA-YVEG-D-GQ-YARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEG 294 (312)
T ss_dssp SCCCCH-HHHHHHHHHHHHHHHHHTTCSSCEEEE-EEEC-C-CS-SCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHH
T ss_pred CCCchh-HHHHHHHHHHHHHHHHcCCCCceEEEE-EecC-C-CC-cceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHH
Confidence 55544 5677777776666211 5788999999 8887 3 53 67899999999999999999633999999999975
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-57 Score=446.64 Aligned_cols=287 Identities=23% Similarity=0.337 Sum_probs=245.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC--cceEEEecCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~~~~~eal~dAD 174 (405)
+||+|||| |+||+++++.|+..+++ .+. | +|++++++++.++||.|..... ..+++.+ +++++++|||
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~----~v~--L--~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~a~~~aD 72 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELG----DIV--L--LDIVEGVPQGKALDLYEASPIEGFDVRVTGT-NNYADTANSD 72 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCS----EEE--E--ECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-SCGGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC----eEE--E--EeCCccHHHHHHHhHHHhHhhcCCCeEEEEC-CCHHHHCCCC
Confidence 69999996 99999999999998864 144 4 4555688999999999875221 2345544 4579999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||+++|.|++||++|.|++.+|+++++++++.++++| |++|+|++|||+|++|+++++.+ ++|+ |+||+||.||++
T Consensus 73 ~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~t~~~~~~~-~~~~~rviG~gt~LD~~ 150 (309)
T 1ur5_A 73 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEVS-GFPKERVIGQAGVLDAA 150 (309)
T ss_dssp EEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHHHH
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHHHHHHHHHc-CCCHHHEEECCcchHHH
Confidence 99999999999999999999999999999999999997 99999999999999999999996 5665 899999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHH--hcCCchH
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK--KWGRSSA 331 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~--~~G~~~~ 331 (405)
|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.++. .+++.++++++++++++ ++|.+.|
T Consensus 151 r~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~g~eii~~~~kgs~~~ 227 (309)
T 1ur5_A 151 RYRTFIAMEAGVSVEDVQA-MLMGGHGDEMVPLPRFSCISGIPVSEFIAPDR--LAQIVERTRKGGGEIVNLLKTGSAYY 227 (309)
T ss_dssp HHHHHHHHHHTCCGGGEEE-CCEECSGGGEECCGGGEEETTEEGGGTSCHHH--HHHHHHHHHTHHHHHHHHHSSCCCCH
T ss_pred HHHHHHHHHhCCChhheeE-EEecCcCCceeeeeecceeCCEeHHHHcCHhH--HHHHHHHHHhhhHHhhhhccCCCcHH
Confidence 9999999999999999995 99999999999999999999999988775543 47899999999999999 7886655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.|.++++++.+|+ +|++++++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 228 -~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~vP~~ig~~Gv~~i~~-~~l~~~e~~~l~~ 294 (309)
T 1ur5_A 228 -APAAATAQMVEAVL--KDKKRVMPVAAYLTG-QYGL-NDIYFGVPVILGAGGVEKILE-LPLNEEEMALLNA 294 (309)
T ss_dssp -HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH--cCCCcEEEEEEEecC-ccCC-cceEEEEEEEEeCCceEEecC-CCCCHHHHHHHHH
Confidence 47777777777777 678999999999999 7999 899999999999999999996 9999999999975
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=440.85 Aligned_cols=291 Identities=19% Similarity=0.258 Sum_probs=255.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--CcceEEEecCcccccC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFE 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~~~~~eal~ 171 (405)
++++||+|||| |.||+.+++.|+..+++ .+.| +|++++++++.++|+++.... ...+++.++ ++++++
T Consensus 2 ~~~~kI~VIGa-G~vG~~ia~~la~~g~~----~v~L----~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~-d~~al~ 71 (322)
T 1t2d_A 2 APKAKIVLVGS-GMIGGVMATLIVQKNLG----DVVL----FDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLA 71 (322)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCC----EEEE----ECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCC----eEEE----EeCCHHHHHHHHHHHHhhhhhcCCCcEEEECC-CHHHhC
Confidence 45789999996 99999999999998874 1444 455678999999999987422 123455544 469999
Q ss_pred CCcEEEEeCCcCCCCCCc-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Ccee
Q 015501 172 DAEWALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~-----r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig 245 (405)
|||+||++++.|++||++ |.|++.+|+++++++++.|.++| |++|+|++|||+|++|+++++.+ ++|+ |+||
T Consensus 72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~t~~~~~~~-g~~~~rviG 149 (322)
T 1t2d_A 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQHS-GVPKNKIIG 149 (322)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHHHHHHHHhc-CCChHHEEe
Confidence 999999999999999999 99999999999999999999997 99999999999999999999986 4555 9999
Q ss_pred ecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc----HHHHHHHHHhhhHH
Q 015501 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGL 321 (405)
Q Consensus 246 ~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~----~~el~~~v~~~~~~ 321 (405)
+||.||++|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+. |. .+++.+.+++++++
T Consensus 150 ~gt~ld~~R~~~~la~~lgv~~~~v~~-~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~e 227 (322)
T 1t2d_A 150 LGGVLDTSRLKYYISQKLNVCPRDVNA-HIVGAHGNKMVLLKRYITVGGIPLQEFINNK-LISDAELEAIFDRTVNTALE 227 (322)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTT-SSCHHHHHHHHHHHHTHHHH
T ss_pred ccCcccHHHHHHHHHHHhCCCHHHeEE-EEEcCCCCcEEeeHHHceECcEeHHHhcccc-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 8999999999999999999999999886543 33 46788899999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHH
Q 015501 322 LIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 401 (405)
Q Consensus 322 ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~ 401 (405)
+++.+|.+.| +.|.++++++.+|+ +|+++++++|++++| +||+ +|++||+||++|++|++++++ ++|+++|+++
T Consensus 228 ii~~kgs~~~-~~a~a~~~~~~ai~--~~~~~v~~~s~~~~g-~~g~-~~~~~~vP~~ig~~Gv~~i~~-~~l~~~e~~~ 301 (322)
T 1t2d_A 228 IVNLHASPYV-APAAAIIEMAESYL--KDLKKVLICSTLLEG-QYGH-SDIFGGTPVVLGANGVEQVIE-LQLNSEEKAK 301 (322)
T ss_dssp HHHHTSSCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHH
T ss_pred HHhccCchHH-HHHHHHHHHHHHHH--hCCCCEEEEEEEecC-ccCC-CceEEEEEEEEeCCeeEEeCC-CCCCHHHHHH
Confidence 9999997665 47777788888877 678999999999999 7999 799999999999999999996 9999999999
Q ss_pred Hhh
Q 015501 402 IAK 404 (405)
Q Consensus 402 l~~ 404 (405)
|++
T Consensus 302 l~~ 304 (322)
T 1t2d_A 302 FDE 304 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-56 Score=438.84 Aligned_cols=290 Identities=24% Similarity=0.425 Sum_probs=248.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEecC---cccccCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGIN---PYELFED 172 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~---~~eal~d 172 (405)
|||+||||+|+||+++++.|+..+++. ++ .|+|+..+.++++++++||.|+. ++. .+++++.+ .+++++|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~---el--~L~Di~~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~l~~al~g 74 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMK---DL--VLIGREHSINKLEGLREDIYDAL-AGTRSDANIYVESDENLRIIDE 74 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCC---EE--EEEECGGGHHHHHHHHHHHHHHH-TTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCC---EE--EEEcCCCchhhhHHHHHHHHHhH-HhcCCCeEEEeCCcchHHHhCC
Confidence 599999988999999999999887653 24 44444226678999999999976 444 34444432 4999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchhh
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LD 251 (405)
||+||+++|.|+++|++|.+++.+|++++++++++++++| ++||+++|||+|++|++++|.+ ++|+ |+||+||.||
T Consensus 75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv~~~t~~~~k~~-~~p~~rviG~gt~LD 151 (313)
T 1hye_A 75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPVDVMTYKALVDS-KFERNQVFGLGTHLD 151 (313)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSHHHHHHHHHHHH-CCCTTSEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcHHHHHHHHHHhh-CcChhcEEEeCccHH
Confidence 9999999999999999999999999999999999999995 9999999999999999999996 5665 9999999999
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhh--hhccccHHHHHHHHHhhhHHHHHhcCCc
Q 015501 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII--KDHKWLEEGFTETIQKRGGLLIKKWGRS 329 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~--~~~~~~~~el~~~v~~~~~~ii~~~G~~ 329 (405)
++|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++ .++ ..+++.++++++++++++.+|.+
T Consensus 152 ~~r~~~~la~~lgv~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~--~~~~~~~~v~~~g~eii~~kgs~ 228 (313)
T 1hye_A 152 SLRFKVAIAKFFGVHIDEVRT-RIIGEHGDSMVPLLSATSIGGIPIQKFERFKEL--PIDEIIEDVKTKGEQIIRLKGGS 228 (313)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTEEGGGCGGGGGC--CHHHHHHHHHHHTTSCCC-----
T ss_pred HHHHHHHHHHHhCcCHHHeEE-EEeeccCCcccceeeccccCCEEHHHHhcCCHH--HHHHHHHHHHhccceeecCCCCc
Confidence 999999999999999999996 9999999999999999999999998874 332 25789999999999999999965
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 330 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 330 ~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+ +.|.++++++.+|+ +|++.+++++++++| +| |+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 229 ~~-~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~~g~-~~~~~~~P~~ig~~Gv~~i~~-~~l~~~e~~~l~~ 298 (313)
T 1hye_A 229 EF-GPAAAILNVVRCIV--NNEKRLLTLSAYVDG-EFDGI-RDVCIGVPVKIGRDGIEEVVS-IELDKDEIIAFRK 298 (313)
T ss_dssp -C-CHHHHHHHHHHHHH--TTCCEEEEEEEEEES-SSSSC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHH--cCCCeEEEEEEeecc-eecCc-cceEEEEEEEEeCCeeEEecC-CCCCHHHHHHHHH
Confidence 44 46666667777777 678999999999999 79 99 899999999999999999996 8999999999975
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=426.69 Aligned_cols=285 Identities=18% Similarity=0.284 Sum_probs=231.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||| |.+|+++++.|+..++++ ++.| +|++++++++.++|+.|.. ++....+++.+++++++|||+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~---eV~L----~D~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~a~~~aDvV 71 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCS---ELVL----VDRDEDRAQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQVV 71 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS---EEEE----ECSSHHHHHHHHHHHTTSC-CTTSCCEEEEECGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---EEEE----EeCCHHHHHHHHHhhhhhh-hhcCCeEEEECCHHHhCCCCEE
Confidence 59999996 999999999999988764 3555 4566788899999999876 4444444444578999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~ 256 (405)
|++++.|++||++|.|++.+|+++++++++.|.+++ |++++|++|||++++++++++.+ .|.|+||+||.||++|++
T Consensus 72 Ii~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~--~~~rviG~gt~Ld~~r~~ 148 (304)
T 2v6b_A 72 ILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA--PGQPVIGSGTVLDSARFR 148 (304)
T ss_dssp EECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS--CSSCEEECTTHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC--ChhcEEeCCcCchHHHHH
Confidence 999999999999999999999999999999999996 99999999999999999999987 356999999999999999
Q ss_pred HHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc--c---cHHHHHHHHHhhhHHHHHhcCCchH
Q 015501 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--W---LEEGFTETIQKRGGLLIKKWGRSSA 331 (405)
Q Consensus 257 ~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~--~---~~~el~~~v~~~~~~ii~~~G~~~~ 331 (405)
+++|+++|+++++|+. +||||||+++||+||+++++|+|+.+++.+.. | ..+++.++++++++++++.+|.++|
T Consensus 149 ~~la~~l~v~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~kg~t~~ 227 (304)
T 2v6b_A 149 HLMAQHAGVDGTHAHG-YVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYY 227 (304)
T ss_dssp HHHHHHHTSCGGGEEC-CEEESSSTTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHhCcCHHHceE-EEecCCCCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 9999999999999997 99999999999999999999999998875433 4 3467899999999999999998877
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+ .|.++++++++|+ +|+++++|++++++| || ++||+||++|++|++++++ ++|+++|+++|++
T Consensus 228 ~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g--yg----~~~~~P~~ig~~Gv~~i~~-~~l~~~e~~~l~~ 290 (304)
T 2v6b_A 228 G-IGAALARITEAVL--RDRRAVLTVSAPTPE--YG----VSLSLPRVVGRQGVLSTLH-PKLTGDEQQKLEQ 290 (304)
T ss_dssp H-HHHHHHHHHHHHH--TTCCEEEEEEEEETT--TT----EEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH--hCCCcEEEEEEEECC--cC----cEEEEEEEEeCCeeEEEcC-CCCCHHHHHHHHH
Confidence 5 5788888888888 679999999999999 87 8999999999999999996 9999999999975
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-55 Score=431.42 Aligned_cols=289 Identities=21% Similarity=0.323 Sum_probs=252.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--CcceEEEecCcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~~~~~eal~dA 173 (405)
++||+|||| |.+|++++..|+..+++ .+.| +|++++++++.++|+.+.... ...+++.+++ +++++||
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~----~V~L----~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d-~~al~~a 83 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLG----DVYM----FDIIEGVPQGKALDLNHCMALIGSPAKIFGENN-YEYLQNS 83 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCC----EEEE----ECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC----eEEE----EECCHHHHHHHHHHHHhHhhccCCCCEEEECCC-HHHHCCC
Confidence 369999996 99999999999998764 2444 456678899999999887521 1235666554 6999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||++++.|++||++|.|++.+|+++++++++.|.++| |++++|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~-~~~~~rviG~~t~Ld~ 161 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAMVYYFKEKS-GIPANKVCGMSGVLDS 161 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEESCHHHHH
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHhc-CCChhhEEEeCcHHHH
Confidence 999999999999999999999999999999999999998 99999999999999999999876 4555 99999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc----HHHHHHHHHhhhHHHHH--hc
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLIK--KW 326 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~----~~el~~~v~~~~~~ii~--~~ 326 (405)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+ .|. .+++.+.++++|+++++ ++
T Consensus 162 ~R~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~v~~~g~eii~~~~~ 239 (328)
T 2hjr_A 162 ARFRCNLSRALGVKPSDVSA-IVVGGHGDEMIPLTSSVTIGGILLSDFVEQ-GKITHSQINEIIKKTAFGGGEIVELLKT 239 (328)
T ss_dssp HHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCHHHeeE-EEecCCCCceeeeeeeceECCEEHHHHhhc-cCCCHHHHHHHHHHHHhhHHHHHhhhCC
Confidence 99999999999999999996 899999999999999999999999988755 343 25677888999999999 68
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 327 G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.+.| +.|.++++++.+|+ +|++++++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 240 gs~~~-~~a~a~~~i~~ai~--~~~~~v~~~~v~~~G-~~g~-~~~~~~vP~~ig~~Gv~~i~~-~~L~~~e~~~l~~ 311 (328)
T 2hjr_A 240 GSAFY-APAASAVAMAQAYL--KDSKSVLVCSTYLTG-QYNV-NNLFVGVPVVIGKNGIEDVVI-VNLSDDEKSLFSK 311 (328)
T ss_dssp CCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred CchHH-HHHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCC-CceEEEEEEEEeCCeeEEecC-CCCCHHHHHHHHH
Confidence 87665 46777777777777 678899999999999 7999 899999999999999999986 8999999999875
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=430.03 Aligned_cols=294 Identities=23% Similarity=0.333 Sum_probs=255.1
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--CcceEEEecCcccc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYEL 169 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~~~~~ea 169 (405)
|..+++||+|||| |.+|++++..|+..+++ .+.| +|++++++++.++|+.|.... ...+++.+++..++
T Consensus 5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~----~V~L----~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea 75 (331)
T 1pzg_A 5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA----DVVL----YDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 75 (331)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC----EEEE----ECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHhCCCC----eEEE----EECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHH
Confidence 5556789999996 99999999999988763 2444 456678899989999887521 22356666655559
Q ss_pred cCCCcEEEEeCCcCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cc
Q 015501 170 FEDAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KN 243 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~-----~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ 243 (405)
++|||+||+++|.|+++|+ +|.+++.+|+++++++++.|+++| |++|+|++|||+|++|+++++.+ ++|+ |+
T Consensus 76 ~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~t~~~~~~~-~~~~~rv 153 (331)
T 1pzg_A 76 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEAS-GVPTNMI 153 (331)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGE
T ss_pred hCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHHHHHHHHhc-CCChhcE
Confidence 9999999999999999999 999999999999999999999997 99999999999999999999987 5554 99
Q ss_pred eeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc----HHHHHHHHHhhh
Q 015501 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRG 319 (405)
Q Consensus 244 ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~----~~el~~~v~~~~ 319 (405)
||+||.||++|++++||+++|+++++|+. +|||+||+++||+||+++++|+|+.+++.+ .|. .+++.+.++++|
T Consensus 154 iG~gt~LD~~R~~~~la~~lgv~~~~v~~-~v~G~Hg~~~~p~~s~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 231 (331)
T 1pzg_A 154 CGMACMLDSGRFRRYVADALSVSPRDVQA-TVIGTHGDCMVPLVRYITVNGYPIQKFIKD-GVVTEKQLEEIAEHTKVSG 231 (331)
T ss_dssp EECCHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHHHH
T ss_pred EeccchHHHHHHHHHHHHHhCCCHHHceE-EEecCCCCCEeeeeecceECCEEHHHHhhc-ccCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999995 999999999999999999999999988654 232 356777888999
Q ss_pred HHHHH--hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHH
Q 015501 320 GLLIK--KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 397 (405)
Q Consensus 320 ~~ii~--~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~ 397 (405)
+++++ ++|.+.| +.|.++++++.+|+ +|++++++++++++| +||+ +|++||+||++|++|++++++ ++|+++
T Consensus 232 ~eii~~~~kgst~~-~~a~a~~~ii~ai~--~~~~~~~~~~v~~~G-~~g~-~~~~~~vP~~vg~~Gv~~i~~-~~L~~~ 305 (331)
T 1pzg_A 232 GEIVRFLGQGSAYY-APAASAVAMATSFL--NDEKRVIPCSVYCNG-EYGL-KDMFIGLPAVIGGAGIERVIE-LELNEE 305 (331)
T ss_dssp HHHHHHHSSSCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHH
T ss_pred HHHHHhhcCCCccc-hHHHHHHHHHHHHH--hCCCcEEEEEEEecC-ccCC-CceEEEEEEEEeCCeeEEecC-CCCCHH
Confidence 99999 7886665 46777777777777 678999999999999 7999 899999999999999999996 899999
Q ss_pred HHHHHhh
Q 015501 398 LRKRIAK 404 (405)
Q Consensus 398 E~~~l~~ 404 (405)
|+++|++
T Consensus 306 e~~~l~~ 312 (331)
T 1pzg_A 306 EKKQFQK 312 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-54 Score=420.65 Aligned_cols=277 Identities=18% Similarity=0.246 Sum_probs=232.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
++++||+|||| |+||+.+++.|+..++++ ++.| +|++++ +.+.++|+.+... .+++.++ ++++++||
T Consensus 12 ~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~---ev~L----~Di~~~-~~g~a~dl~~~~~---~~i~~t~-d~~~l~~a 78 (303)
T 2i6t_A 12 KTVNKITVVGG-GELGIACTLAISAKGIAD---RLVL----LDLSEG-TKGATMDLEIFNL---PNVEISK-DLSASAHS 78 (303)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHHTCCS---EEEE----ECCC------CHHHHHHHTC---TTEEEES-CGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCC---EEEE----EcCCcc-hHHHHHHHhhhcC---CCeEEeC-CHHHHCCC
Confidence 34689999995 999999999999988764 3554 344555 7889999998542 2666664 57999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhH
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs 252 (405)
|+||+++|.+ +|||+|.|++.+|+++++++++.|+++| |++|+|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 79 D~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~-~~p~~rviG~gt~Ld~ 155 (303)
T 2i6t_A 79 KVVIFTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLS-TFPANRVIGIGCNLDS 155 (303)
T ss_dssp SEEEECCCC-----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhc-CCCHHHeeCCCCCchH
Confidence 9999999986 8999999999999999999999999998 99999999999999999999997 5665 99999999999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHH
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~ 332 (405)
+|++++||+++|+++++|+. +||||||++++|+||+.. .|..+++.++++++++++++.+|.+.|
T Consensus 156 ~R~~~~la~~lgv~~~~v~~-~v~G~Hg~s~~p~~s~~~-------------~~~~~~~~~~~~~~g~eii~~kGst~~- 220 (303)
T 2i6t_A 156 QRLQYIITNVLKAQTSGKEV-WVIGEQGEDKVLTWSGQE-------------EVVSHTSQVQLSNRAMELLRVKGQRSW- 220 (303)
T ss_dssp HHHHHHHHHTSCCTTGGGGE-EEEBSCSSSCEEEEBCSS-------------CCCCHHHHHHHHHHHHTTSSSCCCCHH-
T ss_pred HHHHHHHHHHcCCChHHeEE-EEecCCCCCccccccccc-------------cccHHHHHHHHHHHHHHHHHccCchHH-
Confidence 99999999999999999995 999999999999999951 134467888899999999999996655
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 333 s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.|.++++++.+|+ +|++.+++++++++| +||+|+|+|||+||++|++|++++++...|+++|+++|++
T Consensus 221 ~~a~a~~~i~~ai~--~~~~~~~~vs~~~~g-~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~ 289 (303)
T 2i6t_A 221 SVGLSVADMVDSIV--NNKKKVHSVSALAKG-YYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQS 289 (303)
T ss_dssp HHHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--cCCCcEEEEEEEeCC-ccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHH
Confidence 47777777777777 678899999999999 7999999999999999999999998623899999999875
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-53 Score=418.31 Aligned_cols=288 Identities=22% Similarity=0.346 Sum_probs=251.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--CcceEEEecCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~~~~~eal~dAD 174 (405)
|||+|||| |.+|+.++..|+..++.. ++.| +|++++++++.++|+.+.... ...+++.++ +++++++||
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~---~V~l----~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~-d~~~l~~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLAR---ELVL----LDVVEGIPQGKALDMYESGPVGLFDTKVTGSN-DYADTANSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS---EEEE----ECSSSSHHHHHHHHHHTTHHHHTCCCEEEEES-CGGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---EEEE----EeCChhHHHHHHHhHHhhhhcccCCcEEEECC-CHHHHCCCC
Confidence 59999996 999999999999875421 3554 456678889998888876311 123455544 467799999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-CceeecchhhHH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~LDs~ 253 (405)
+||++.+.|++||++|.|++.+|+++++++++.|++++ |+++++++|||+|++++++++.+ ++|+ |+||+||.||++
T Consensus 72 vViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~~~~~~~~~~~~-~~~~~rviG~gt~ld~~ 149 (310)
T 1guz_A 72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGMAGVLDAA 149 (310)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHHH-CSCGGGEEEECHHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchHHHHHHHHHhc-CCChHHEEECCCchHHH
Confidence 99999999999999999999999999999999999996 99999999999999999999986 5665 899999999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHH--hcCCchH
Q 015501 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK--KWGRSSA 331 (405)
Q Consensus 254 R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~--~~G~~~~ 331 (405)
|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.++. .+++.++++++++++++ ++|.+.|
T Consensus 150 r~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~g~~ii~~~~kgs~~~ 226 (310)
T 1guz_A 150 RFRSFIAMELGVSMQDINA-CVLGGHGDAMVPVVKYTTVAGIPISDLLPAET--IDKLVERTRNGGAEIVEHLKQGSAFY 226 (310)
T ss_dssp HHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHSCHHH--HHHHHHHHHTHHHHHHHHHSSSCCCH
T ss_pred HHHHHHHHHhCCCHHHeEE-EEEcccCCcEeeeeecccCCCEEHHHHCCHHH--HHHHHHHHHHhHHHHHhhcCCCCcHH
Confidence 9999999999999999996 99999999999999999999999999875543 47899999999999999 7886655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.|.++++++.+|+ +|+++|++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 227 -~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~~P~~ig~~Gv~~i~~-~~l~~~e~~~l~~ 293 (310)
T 1guz_A 227 -APASSVVEMVESIV--LDRKRVLPCAVGLEG-QYGI-DKTFVGVPVKLGRNGVEQIYE-INLDQADLDLLQK 293 (310)
T ss_dssp -HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCC-cceEEEEEEEEeCCeeEEEcC-CCCCHHHHHHHHH
Confidence 47777788888877 678999999999999 7999 899999999999999999996 9999999999975
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-52 Score=409.85 Aligned_cols=290 Identities=23% Similarity=0.361 Sum_probs=253.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||| |.+|++++..|+..+..+ ++.| +|++++++++.++|+.+.. ++.....+...+++++++||+|
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~---~V~l----~D~~~~~~~~~~~~l~~~~-~~~~~~~i~~~d~~~~~~aDvV 71 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAR---EMVL----IDVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV 71 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCS---EEEE----ECSSHHHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---eEEE----EeCChHHHHHHHHHHHhhh-hhcCCcEEEeCCHHHhCCCCEE
Confidence 59999996 999999999999887643 3555 5667788898888888765 3322223322358999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC-CCceeecchhhHHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDENRA 255 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~-~k~ig~gt~LDs~R~ 255 (405)
|++.+.+++||++|.|++.+|+++++++++.|.+++ |++++|++|||++++++++++.+ ++| .|+||+||.||++|+
T Consensus 72 iiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~~-~~~~~rviG~~t~ld~~r~ 149 (319)
T 1a5z_A 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKES-GMDPRKVFGSGTVLDTARL 149 (319)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECTTHHHHHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHHHHHHHHHh-CCChhhEEeeCccHHHHHH
Confidence 999999999999999999999999999999999997 99999999999999999999887 455 599999999999999
Q ss_pred HHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc-c---cHHHHHHHHHhhhHHHHHhcCCchH
Q 015501 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-W---LEEGFTETIQKRGGLLIKKWGRSSA 331 (405)
Q Consensus 256 ~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~-~---~~~el~~~v~~~~~~ii~~~G~~~~ 331 (405)
++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+.. | ..+++.+.++++++++++.+|.+++
T Consensus 150 ~~~la~~lgv~~~~v~~-~v~G~hg~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~~~ 228 (319)
T 1a5z_A 150 RTLIAQHCGFSPRSVHV-YVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKGATHY 228 (319)
T ss_dssp HHHHHHHHTCCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHhCcCHHHceE-EEEeCCCCCcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccCCchHH
Confidence 99999999999999996 99999999999999999999999998865322 3 2467888999999999999998877
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 332 ~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+ .|.++++++.+|+ +|++.+++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 229 ~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~vP~~vg~~Gv~~i~~-~~L~~~e~~~l~~ 295 (319)
T 1a5z_A 229 A-IALAVADIVESIF--FDEKRVLTLSVYLED-YLGV-KDLCISVPVTLGKHGVERILE-LNLNEEELEAFRK 295 (319)
T ss_dssp H-HHHHHHHHHHHHH--TTCCEEEEEEEEESS-BTTB-CSEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH--hCCCCEEEEEEEecC-ccCc-cceEEEEEEEEeCCceEEEec-CCCCHHHHHHHHH
Confidence 5 5777888888888 679999999999999 7999 899999999999999999996 8999999999875
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-51 Score=400.65 Aligned_cols=280 Identities=23% Similarity=0.267 Sum_probs=231.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCccc-ccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYE-LFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~e-al~dA 173 (405)
|||+||||+|+||+++++.|+..++.. ++. |+|++. +++.++||.|...+ .+++.+ +++++ +++||
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~---ev~--L~Di~~----~~~~a~dL~~~~~~--~~l~~~~~t~d~~~a~~~a 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVS---RLT--LYDIAH----TPGVAADLSHIETR--ATVKGYLGPEQLPDCLKGC 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCS---EEE--EEESSS----HHHHHHHHTTSSSS--CEEEEEESGGGHHHHHTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCc---EEE--EEeCCc----cHHHHHHHhccCcC--ceEEEecCCCCHHHHhCCC
Confidence 599999977999999999999887643 344 444443 68899999997633 245553 23554 79999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH----HHHHHCCCCCC-Cceeecc
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL----ICLKNAPSIPA-KNFHALT 248 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~----~~~k~s~~~~~-k~ig~gt 248 (405)
|+||+++|.|+++|++|.|++.+|+++++++++.|++++ |++|+|++|||+|++|+ ++++. +++|+ |+||+ |
T Consensus 70 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~~~~~~~~-~~~p~~rvig~-t 146 (314)
T 1mld_A 70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNSTIPITAEVFKKH-GVYNPNKIFGV-T 146 (314)
T ss_dssp SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHT-TCCCTTSEEEC-C
T ss_pred CEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcchhHHHHHHHHHHc-CCCCcceEEEe-e
Confidence 999999999999999999999999999999999999997 99999999999999995 34444 46776 88999 9
Q ss_pred hhhHHHHHHHHHHHhCCCCCCceeEEEEeec-CCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc-
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW- 326 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~H-G~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~- 326 (405)
.||++|++++||+++|++|++|+ ++||||| |++++|+||+++ |+.+ +.++. .+++.++++++++++++.|
T Consensus 147 ~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H~G~~~~p~~s~~~----~~~~-~~~~~--~~~~~~~v~~~g~eii~~k~ 218 (314)
T 1mld_A 147 TLDIVRANAFVAELKGLDPARVS-VPVIGGHAGKTIIPLISQCT----PKVD-FPQDQ--LSTLTGRIQEAGTEVVKAKA 218 (314)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCB-CCEEECSSGGGEEECGGGCB----SCCC-CCHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHhCcChHhEE-EEEccCCCCCcEeeecccCC----Cccc-CCHHH--HHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999 5999999 799999999998 4333 22222 3789999999999999855
Q ss_pred --CCchHHHHHHHHHHHHHHhhcCCC-CCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHHH
Q 015501 327 --GRSSAASTAVSIVDAMKSLVTPTP-EGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRI 402 (405)
Q Consensus 327 --G~~~~~s~A~~i~~ai~~~~~~~~-~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~l 402 (405)
|.+. .+.|.++++++++|+.+.+ ++.++++ ++++| +| ++|++||+||++|++|++++++ + +|+++|+++|
T Consensus 219 ~~g~t~-~~~a~a~~~~~~ai~~~~~g~~~v~~~-~~~~g-~y--~~~~~~~~P~~ig~~Gv~~i~~-l~~l~~~e~~~l 292 (314)
T 1mld_A 219 GAGSAT-LSMAYAGARFVFSLVDAMNGKEGVVEC-SFVKS-QE--TDCPYFSTPLLLGKKGIEKNLG-IGKISPFEEKMI 292 (314)
T ss_dssp TSCSCC-HHHHHHHHHHHHHHHHHHHTCTTCEEE-EEEEC-CS--SSSSEEEEEEEEETTEEEEECC-CCSCCHHHHHHH
T ss_pred CCCCcc-hhHHHHHHHHHHHHHcCcCCCcceEEE-EEeCC-cc--CCceEEEEEEEEeCCeeEEecC-CCCCCHHHHHHH
Confidence 5444 3577777888887774322 4478999 79999 68 6899999999999999999974 8 9999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 293 ~~ 294 (314)
T 1mld_A 293 AE 294 (314)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=390.84 Aligned_cols=309 Identities=50% Similarity=0.834 Sum_probs=266.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
|+++|||+|+||+|+||++++..|+..+.++.++...+.++|.+...+++++.++||.|..+++..++..+.+.+++++|
T Consensus 1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~ 80 (327)
T 1y7t_A 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (327)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCC
Confidence 34568999999889999999999999887643333355565554334667888999988654555567766777899999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecchhhH
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs 252 (405)
+|+||.+++.+++++++|.+++..|+.+++++++.++++++|+++++++|||+|.++++..+.++.+++..+.+.|.||+
T Consensus 81 ~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~~ 160 (327)
T 1y7t_A 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDH 160 (327)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHH
T ss_pred CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccchHHH
Confidence 99999999999999999999999999999999999999843899999999999999999888764566656677799999
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCCchHH
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~~~~~ 332 (405)
.|+.+++++++|+++..++..+|||+||++++|+|+++.++|+|+.+++.+ +|..+++.++++++|+++++.||.++++
T Consensus 161 er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~v~~~g~~ii~~kg~~~~~ 239 (327)
T 1y7t_A 161 NRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM-EWYEKVFIPTVAQRGAAIIQARGASSAA 239 (327)
T ss_dssp HHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCH-HHHHHTHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCeeHHHhccc-hhHHHHHHHHHHHHHHHHHHccCCCchH
Confidence 999999999999999999966789999999999999999999999887643 4556889999999999999999988888
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 333 s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.|.++++++++|+.+.++++++|++++++| +||+|+|+|||+||++ ++|+++++++++|+++|+++|++
T Consensus 240 ~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~g-~yg~~~~~~~~~P~~i-~~G~~~i~~~~~l~~~e~~~l~~ 309 (327)
T 1y7t_A 240 SAANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTA-KDGAYRVVEGLEINEFARKRMEI 309 (327)
T ss_dssp HHHHHHHHHHHHHHTBCCTTCCEEEEEECSS-GGGCCTTSEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEEEecC-ccCCCCCeEEEEEEEE-cCCeEEecCCCCCCHHHHHHHHH
Confidence 7888888999988843227899999999999 6999999999999999 99999998669999999999975
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=393.57 Aligned_cols=283 Identities=20% Similarity=0.243 Sum_probs=233.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE---ecCccccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---GINPYELF 170 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i---~~~~~eal 170 (405)
+++|||+||||+|+||++++..|+..++.. .+.++|++. + ++.++||.+...+ .++.. +++.++++
T Consensus 6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~-----ev~l~Di~~--~--~~~~~dL~~~~~~--~~v~~~~~t~d~~~al 74 (326)
T 1smk_A 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVS-----VLHLYDVVN--A--PGVTADISHMDTG--AVVRGFLGQQQLEAAL 74 (326)
T ss_dssp --CEEEEEETTTSTTHHHHHHHHHHCTTEE-----EEEEEESSS--H--HHHHHHHHTSCSS--CEEEEEESHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEeCCC--c--HhHHHHhhccccc--ceEEEEeCCCCHHHHc
Confidence 356899999988999999999999876532 244444443 3 7789999986532 23433 22446889
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH----HHHHHHHHCCCCCC-Ccee
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFH 245 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~----~t~~~~k~s~~~~~-k~ig 245 (405)
+|||+||++++.|+++|++|.+++.+|+++++++++++.+++ |+++|+++|||+|+ +|+++++.+ ++|+ |+||
T Consensus 75 ~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~t~~~~~~~-~~p~~rviG 152 (326)
T 1smk_A 75 TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNPVNSTVPIAAEVFKKAG-TYDPKRLLG 152 (326)
T ss_dssp TTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHHHHHT-CCCTTSEEE
T ss_pred CCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCchHHHHHHHHHHHHHcc-CCCcccEEE
Confidence 999999999999999999999999999999999999999997 99999999999999 555567776 5665 8899
Q ss_pred ecchhhHHHHHHHHHHHhCCCCCCceeEEEEeec-CCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHH
Q 015501 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK 324 (405)
Q Consensus 246 ~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~H-G~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~ 324 (405)
+ |.||++|++++||+++|+++++|+ ++||||| |++++|+||+++|.+. +.++. .+++.+.++++++++++
T Consensus 153 ~-~~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H~G~~~~p~~s~~~v~~~-----~~~~~--~~~~~~~v~~~g~eii~ 223 (326)
T 1smk_A 153 V-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPSS-----FTQEE--ISYLTDRIQNGGTEVVE 223 (326)
T ss_dssp C-CHHHHHHHHHHHHHHHTCCGGGCB-CCEEECSSGGGEEECGGGCBSCCC-----CCHHH--HHHHHHHHHHHHHHHHH
T ss_pred E-eehHHHHHHHHHHHHhCcChhheE-EEEecccCCceEEEecccCeecCc-----CCHHH--HHHHHHHHHHHHHHHHh
Confidence 9 999999999999999999999999 5999999 9999999999988642 22222 37899999999999998
Q ss_pred hc---CCchH--HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHH
Q 015501 325 KW---GRSSA--ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 399 (405)
Q Consensus 325 ~~---G~~~~--~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~ 399 (405)
.| |.+.| +.++..++++|..|+ +|++.+++++ +++| +| |+|++||+||++|++|++++++.++|+++|+
T Consensus 224 ~k~~~gs~~~~~a~a~~~~~~ai~~~~--~~~~~v~~~~-~~~g-~~--~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~ 297 (326)
T 1smk_A 224 AKAGAGSATLSMAYAAVKFADACLRGL--RGDAGVIECA-FVSS-QV--TELPFFASKVRLGRNGIEEVYSLGPLNEYER 297 (326)
T ss_dssp HTTTSCCCCHHHHHHHHHHHHHHHHHH--HTCSCEEEEE-EEEC-CS--SSSSEEEEEEEEETTEEEEECCCCCCCHHHH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHh--CCCCeEEEEE-eecc-cc--CCceEEEEEEEEeCCeeEEEcCCCCCCHHHH
Confidence 76 66655 556666777776667 5788999998 7898 44 5789999999999999999985589999999
Q ss_pred HHHhh
Q 015501 400 KRIAK 404 (405)
Q Consensus 400 ~~l~~ 404 (405)
++|++
T Consensus 298 ~~l~~ 302 (326)
T 1smk_A 298 IGLEK 302 (326)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=382.29 Aligned_cols=293 Identities=18% Similarity=0.238 Sum_probs=248.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEecCccccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELF 170 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal 170 (405)
|++++||+|||| |.+|+.++..|+..++. .+.| +|++++++++.++|+.+... ....++..+++ ++++
T Consensus 1 M~~~~kI~VIGa-G~~G~~ia~~la~~g~~----~V~l----~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d-~~a~ 70 (317)
T 2ewd_A 1 MIERRKIAVIGS-GQIGGNIAYIVGKDNLA----DVVL----FDIAEGIPQGKALDITHSMVMFGSTSKVIGTDD-YADI 70 (317)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHHTCC----EEEE----ECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGG
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCc----eEEE----EeCCchHHHHHHHHHHhhhhhcCCCcEEEECCC-HHHh
Confidence 455689999996 99999999999988753 2444 45566788888888877531 12234555544 5999
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCC-CCCceeecch
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI-PAKNFHALTR 249 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~-~~k~ig~gt~ 249 (405)
++||+||++.+.|++||++|.|++.+|.++++++++.|.+++ |+++++++|||++++++++++.+ ++ |.|+||+||.
T Consensus 71 ~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~~~~~~~~~~-~~~~~rviG~~t~ 148 (317)
T 2ewd_A 71 SGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDVMVSHFQKVS-GLPHNKVCGMAGV 148 (317)
T ss_dssp TTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHH-CCCGGGEEESCHH
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHhh-CCCHHHEEeccCc
Confidence 999999999999999999999999999999999999999997 89999999999999999999887 46 4599999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccc---cHHHHHHHHHhhhHHHHH--
Q 015501 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKRGGLLIK-- 324 (405)
Q Consensus 250 LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~---~~~el~~~v~~~~~~ii~-- 324 (405)
+|+.|+++++|+++|++++++.+ +|||+||++++|+||.++++|+|+.+++.+.-+ ..+++.+.++.+++++++
T Consensus 149 ld~~r~~~~la~~lg~~~~~v~~-~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~ 227 (317)
T 2ewd_A 149 LDSSRFRTFIAQHFGVNASDVSA-NVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL 227 (317)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcChhhceE-EEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh
Confidence 99999999999999999999997 899999999999999999999999887654211 135566667778899988
Q ss_pred hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 325 ~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
++|.+.| +.|.++++.+.+|+ +|+++++|++++++| +||+ +|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 228 g~g~~~~-~~a~a~~~~~~ai~--~~~~~~~~~~~~~~G-~~g~-~~~~~~~P~~i~~~Gv~~i~~-~~l~~~e~~~l~~ 301 (317)
T 2ewd_A 228 KTGTAYF-APAAAAVKMAEAYL--KDKKAVVPCSAFCSN-HYGV-KGIYMGVPTIIGKNGVEDILE-LDLTPLEQKLLGE 301 (317)
T ss_dssp SSSCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEESS-STTC-SSEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred cCCchHH-HHHHHHHHHHHHHH--cCCCeEEEEEEEecC-ccCC-cceEEEeEEEEcCCeeEEecC-CCCCHHHHHHHHH
Confidence 4655555 46677777777777 578899999999999 7999 899999999999999999986 8999999999875
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-48 Score=377.31 Aligned_cols=286 Identities=17% Similarity=0.200 Sum_probs=240.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+||| +|.+|+.++..|+..++.. ++.| +|++++++++.++|+.+.......++.+.+.+++++++||+
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~---~V~l----~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~aDv 72 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVAD---DYVF----IDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADV 72 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCS---EEEE----ECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCC---EEEE----EcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhCCCCE
Confidence 57999999 5999999999999887522 3555 56777889999988877652111234442345699999999
Q ss_pred EEEeCCcCCC----CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchh
Q 015501 176 ALLIGAKPRG----PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (405)
Q Consensus 176 VIi~~g~~~k----~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~L 250 (405)
||++.+.+++ ||++|.+++.+|+++++++++.+.+++ |++++|++|||+|++++++++.+ ++|+ |+||+||.|
T Consensus 73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~~-~~~~~rvig~gt~l 150 (309)
T 1hyh_A 73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVT-GFPAHKVIGTGTLL 150 (309)
T ss_dssp EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHH
T ss_pred EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHHHHHHHHHhc-CCCHHHEeecCccc
Confidence 9999988888 999999999999999999999999997 99999999999999999999886 4665 999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhh--hhccccHHHHHHHHHhhhHHHHHhcCC
Q 015501 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII--KDHKWLEEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 251 Ds~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~--~~~~~~~~el~~~v~~~~~~ii~~~G~ 328 (405)
|++|++.++++.+++++++|+. ++|||||++++|+||+++++|.|+.++. .++. .+++.+.++++++++++.||.
T Consensus 151 d~~r~~~~~a~~l~~~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~~~~~--~~~~~~~v~~~g~~ii~~kg~ 227 (309)
T 1hyh_A 151 DTARMQRAVGEAFDLDPRSVSG-YNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDID--LAAIEEEARKGGFTVLNGKGY 227 (309)
T ss_dssp HHHHHHHHHHHHHTCCGGGCBC-CEEBCTTTTCEECTTTCEETTEEGGGC-----CC--HHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHhCCChhheEE-EEEeCCCCcEeeccccceECCEEHHHhccCCHHH--HHHHHHHHHHhHHHHHhccCC
Confidence 9999999999999999999995 8999999999999999999999998873 3333 378999999999999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.| +.|.++++++.+|+ +|++.+++++++++| +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 228 ~~~-~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g------~~~~~~vP~~i~~~Gv~~i~~-~~l~~~e~~~l~~ 293 (309)
T 1hyh_A 228 TSY-GVATSAIRIAKAVM--ADAHAELVVSNRRDD------MGMYLSYPAIIGRDGVLAETT-LDLTTDEQEKLLQ 293 (309)
T ss_dssp CCH-HHHHHHHHHHHHHH--TTCCEEEEEEEECTT------TCSEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHHHH--cCCCcEEEEEEEECC------CCeEEEEEEEEeCCceEEEeC-CCCCHHHHHHHHH
Confidence 766 36667777777777 678899999999998 478999999999999999986 8999999999975
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=355.73 Aligned_cols=286 Identities=16% Similarity=0.109 Sum_probs=224.3
Q ss_pred CCCEEEEEcCCCchHHH--HHHHHHh--ccc-CCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc
Q 015501 95 KMVNIAVSGAAGMIANH--LLFKLAA--GEV-LGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~--la~~L~~--~~~-~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea 169 (405)
+++||+|||| |++ .+ ++..|+. .++ .+ +|.| +|++++++++ +.|+.+.......+++.+++.+++
T Consensus 1 ~~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~---el~L----~Di~~~~~~~-~~~~~~~~~~~~~~v~~t~d~~~a 70 (417)
T 1up7_A 1 RHMRIAVIGG-GSS-YTPELVKGLLDISEDVRID---EVIF----YDIDEEKQKI-VVDFVKRLVKDRFKVLISDTFEGA 70 (417)
T ss_dssp CCCEEEEETT-TCT-THHHHHHHHHHHTTTSCCC---EEEE----ECSCHHHHHH-HHHHHHHHHTTSSEEEECSSHHHH
T ss_pred CCCEEEEECC-CHH-HHHHHHHHHHhcccCCCcC---EEEE----EeCCHHHHHH-HHHHHHHHhhCCeEEEEeCCHHHH
Confidence 3689999996 776 33 3345565 454 32 3555 4556678876 777776432111345554454699
Q ss_pred cCCCcEEEEeCCcCCCCCCchh-------h-------------hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 170 FEDAEWALLIGAKPRGPGMERA-------G-------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~-------~-------------ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
++|||+||++++.+++||++|. + ++.+|+++++++++.|+++| +||+|++|||+|++|
T Consensus 71 l~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvdi~t 148 (417)
T 1up7_A 71 VVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSGHIT 148 (417)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHHHHH
T ss_pred hCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHHHHH
Confidence 9999999999999988888873 3 35899999999999999995 999999999999999
Q ss_pred HHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-----------ecCCCcccccccc---eEcC-
Q 015501 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-----------NHSTTQVPDFLNA---RING- 294 (405)
Q Consensus 230 ~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-----------~HG~~~vp~~S~a---~I~G- 294 (405)
++++|.+| ..|+||+|+.++ |+++.+|+.+|+++++|+. +|+| +||++++|.||.. +++|
T Consensus 149 ~a~~k~~p--~~rviG~c~~~~--r~~~~la~~lgv~~~~v~~-~v~GlNH~~w~~~~~~hG~d~~p~~~~~~~~~~~~~ 223 (417)
T 1up7_A 149 EFVRNYLE--YEKFIGLCNVPI--NFIREIAEMFSARLEDVFL-KYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNI 223 (417)
T ss_dssp HHHHHTTC--CSSEEECCSHHH--HHHHHHHHHTTCCGGGEEE-EEEEETTEEEEEEEEETTEECHHHHHHHHTTC---C
T ss_pred HHHHHhCC--CCCEEEeCCCHH--HHHHHHHHHhCCCHHHCeE-EEEeecceeeEEEeecCCcEehhhHHHHHHHhhCCC
Confidence 99999862 239999999985 9999999999999999995 8999 9999999999996 6665
Q ss_pred --cch-Hhhhhh---------------cc----c----cHHHHHHHHHhhhHHHH----------HhcCCchHHHHHHHH
Q 015501 295 --LPV-KEIIKD---------------HK----W----LEEGFTETIQKRGGLLI----------KKWGRSSAASTAVSI 338 (405)
Q Consensus 295 --~p~-~~~~~~---------------~~----~----~~~el~~~v~~~~~~ii----------~~~G~~~~~s~A~~i 338 (405)
.|+ .++++. ++ + .+.+..+++++++++++ .++|.+.++..|..|
T Consensus 224 ~~~~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~kg~t~~~~~a~~i 303 (417)
T 1up7_A 224 PDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHL 303 (417)
T ss_dssp CTTSCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTHHHHHHHH
T ss_pred cCCchHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhcCCcHHHHHHHHH
Confidence 676 233210 00 0 01222466777788888 567877788888889
Q ss_pred HHHHHHhhcCCCCCcEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 339 VDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 339 ~~ai~~~~~~~~~~~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+++|. +|++.++++||+++| .| |+|+|+++|+||+||++|++++.. .+|+++|+++++.
T Consensus 304 i~AI~-----~d~~~~~~vsv~n~G-~i~~lp~d~~vevP~~vg~~Gi~~i~~-~~L~~~e~~~l~~ 363 (417)
T 1up7_A 304 IRDLE-----TDEGKIHIVNTRNNG-SIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIHA 363 (417)
T ss_dssp HHHHH-----SSSCEEEEEEEECTT-SSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHHH
T ss_pred HHHHH-----cCCCeEEEEEEecCC-ccCCCCCCeEEEEeEEEeCCceEEeec-CCCCHHHHHHHHH
Confidence 88887 799999999999999 68 799999999999999999999985 8999999999874
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=357.33 Aligned_cols=288 Identities=14% Similarity=0.106 Sum_probs=223.8
Q ss_pred CCEEEEEcCCCch-HHHHHHHHHh--cccCCCCCceEEEeccccchh--hhHHHHHHHhhhhc---CCCcceEEEecCcc
Q 015501 96 MVNIAVSGAAGMI-ANHLLFKLAA--GEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSL---FPLLREVKIGINPY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~V-Gs~la~~L~~--~~~~~~d~~i~L~l~~~d~~~--~~l~g~a~DL~d~~---~~~~~~v~i~~~~~ 167 (405)
++||+|||| |++ |..++..|+. .++.. .+|.| +|+++ +++++. .|+.+.. .....+++.+++.+
T Consensus 7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~--~ev~L----~Di~~~~e~~~~~-~~~~~~~~~~~~~~~~i~~t~D~~ 78 (450)
T 1s6y_A 7 RLKIATIGG-GSSYTPELVEGLIKRYHELPV--GELWL----VDIPEGKEKLEIV-GALAKRMVEKAGVPIEIHLTLDRR 78 (450)
T ss_dssp CEEEEEETT-TCTTHHHHHHHHHHTTTTCCE--EEEEE----ECCGGGHHHHHHH-HHHHHHHHHHTTCCCEEEEESCHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCCCCC--CEEEE----EEcCCChHHHHHH-HHHHHHHHhhcCCCcEEEEeCCHH
Confidence 679999996 888 7777778887 34411 13544 45555 777773 3444322 12334566666666
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhh--------------------hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 168 ELFEDAEWALLIGAKPRGPGMERAG--------------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~r~~--------------------ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
++++|||+||++++.+++||++|.+ ++.||+++++++++.|+++| |+||+|++|||+|+
T Consensus 79 eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNPvdi 157 (450)
T 1s6y_A 79 RALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGM 157 (450)
T ss_dssp HHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHH
T ss_pred HHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHHH
Confidence 9999999999999998888888764 47999999999999999997 99999999999999
Q ss_pred HHHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-----------ecCCCcccccccceEc---
Q 015501 228 NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-----------NHSTTQVPDFLNARIN--- 293 (405)
Q Consensus 228 ~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-----------~HG~~~vp~~S~a~I~--- 293 (405)
+|++++|.+| ..|+||+|+.++ |+++.+|+.+|+++++|+. +|+| +||++++|.|+...++
T Consensus 158 vT~a~~k~~p--~~rViG~c~~~~--r~~~~la~~lgv~~~~v~~-~v~GlNH~~w~~~v~~~G~d~~p~~~~~~~~~~~ 232 (450)
T 1s6y_A 158 VTEAVLRYTK--QEKVVGLCNVPI--GMRMGVAKLLGVDADRVHI-DFAGLNHMVFGLHVYLDGVEVTEKVIDLVAHPDR 232 (450)
T ss_dssp HHHHHHHHCC--CCCEEECCSHHH--HHHHHHHHHHTSCGGGEEE-EEEEETTEEEEEEEEETTEECHHHHHHHHSCC--
T ss_pred HHHHHHHhCC--CCCEEEeCCcHH--HHHHHHHHHhCCCHHHcEE-EEEeeecceeEEEeeeCCcCchHhHHHHHhhhcc
Confidence 9999999973 239999999974 9999999999999999995 8999 8999999999986543
Q ss_pred -C--------cchH-hhh-----------h-----hc---cc--------cHHHHHHHHHhhhHHHH-----Hh------
Q 015501 294 -G--------LPVK-EII-----------K-----DH---KW--------LEEGFTETIQKRGGLLI-----KK------ 325 (405)
Q Consensus 294 -G--------~p~~-~~~-----------~-----~~---~~--------~~~el~~~v~~~~~~ii-----~~------ 325 (405)
| .|+. +++ . ++ +| .+.++.+++++++++++ ..
T Consensus 233 ~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~ 312 (450)
T 1s6y_A 233 SGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLE 312 (450)
T ss_dssp ----------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC----------
T ss_pred ccccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhh
Confidence 2 2331 111 0 11 00 12355666777788887 22
Q ss_pred -cCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 326 -WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 326 -~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
+|.+.++..|..|+++|. +|++.++++||+++| .| |+|+|+++|+||+||++|+++++. .+|+++|+++++
T Consensus 313 ~~~~~~~~~~a~~ii~AI~-----~d~~~~~~vsv~n~G-~i~~lp~d~~vevP~vvg~~Gi~~i~~-~~L~~~e~~l~~ 385 (450)
T 1s6y_A 313 KRGGAYYSDAACSLISSIY-----NDKRDIQPVNTRNNG-AIASISAESAVEVNCVITKDGPKPIAV-GDLPVAVRGLVQ 385 (450)
T ss_dssp -CCSCCHHHHHHHHHHHHH-----HTCCCEEEEEEECTT-SBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHH-----cCCCeEEEEEeecCc-eecCCCCCeEEEEeEEEcCCCeEEeec-CCCCHHHHHHHH
Confidence 444456778888888887 689999999999999 67 799999999999999999999985 899999999986
Q ss_pred h
Q 015501 404 K 404 (405)
Q Consensus 404 ~ 404 (405)
.
T Consensus 386 ~ 386 (450)
T 1s6y_A 386 Q 386 (450)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=332.17 Aligned_cols=292 Identities=21% Similarity=0.294 Sum_probs=247.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc--ceEEEecCcccccC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFE 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~~~~~eal~ 171 (405)
+++|||+|||| |.||+.++..|+..+.++ ++.| +|++++++++.++|+.+.. .+. .++..+ .++++++
T Consensus 5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~---~V~l----~d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~ 74 (319)
T 1lld_A 5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAR---EIVL----EDIAKERVEAEVLDMQHGS-SFYPTVSIDGS-DDPEICR 74 (319)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCCS---EEEE----ECSSHHHHHHHHHHHHHTG-GGSTTCEEEEE-SCGGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCC---EEEE----EeCChhHHHHHHHHHHhhh-hhcCCeEEEeC-CCHHHhC
Confidence 34689999996 999999999999987653 3555 5666778888888887765 332 233333 3578999
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~L 250 (405)
+||+||++.+.+++||++|.+++.+|+++++++++.+.+++ |+++|++++||++.+++++++.+ .+|+ ++||++|.+
T Consensus 75 ~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~-~~~~vi~~~Np~~~~~~~~~~~~-~~~~~~vig~~~~l 152 (319)
T 1lld_A 75 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVDIATHVAQKLT-GLPENQIFGSGTNL 152 (319)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHH-TCCTTSEEECTTHH
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEecCchHHHHHHHHHhc-CCCHHHEeeccccH
Confidence 99999999999999999999999999999999999999995 99999999999999999998875 4665 889999999
Q ss_pred hHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc------HHHHHHHHHhhhHHHHH
Q 015501 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL------EEGFTETIQKRGGLLIK 324 (405)
Q Consensus 251 Ds~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~------~~el~~~v~~~~~~ii~ 324 (405)
|+.|++..+++.+++++.+++. ++||+||++++|+|+++.++|.|+.++.....|. .+++.+.++++++++++
T Consensus 153 ~~~r~~~~~a~~~~v~~~~v~~-~~~G~~g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~ 231 (319)
T 1lld_A 153 DSARLRFLIAQQTGVNVKNVHA-YIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN 231 (319)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCHHHeEE-EEEeCCCCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhh
Confidence 9999999999999999999986 8899999999999999999999998775432222 35677888889999999
Q ss_pred hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 325 ~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+|.+.++ .+....+++++|+ .+++.++++|++++| .||. .+.++|+||.++++|++++++ ++|+++|+++|++
T Consensus 232 ~~G~~~~~-~a~~~~sm~~di~--~~~~~ei~~s~~~~G-~~~~-~~~~~gvp~~~~~~Gv~~i~~-~~l~~~e~~~l~~ 305 (319)
T 1lld_A 232 GKGATNYA-IGMSGVDIIEAVL--HDTNRILPVSSMLKD-FHGI-SDICMSVPTLLNRQGVNNTIN-TPVSDKELAALKR 305 (319)
T ss_dssp SCCSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECSS-BTTB-CSSEEEEEEEEETTEEECCSC-CCCCHHHHHHHHH
T ss_pred CCCCchHH-HHHHHHHHHHHHH--cCCCcEEEEEEEecC-cCCc-cceEEEEEEEEeCCeeEEEcC-CCCCHHHHHHHHH
Confidence 99977654 5666777777777 568899999999999 7988 799999999999999999996 9999999999975
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=347.83 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=217.9
Q ss_pred hccCCCEEEEEcCCCch-HHHHHHHHHhc--ccCCCCCceEEEeccccchhhhHHHHHHHhhhhc---CCCcceEEEecC
Q 015501 92 SWKKMVNIAVSGAAGMI-ANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---FPLLREVKIGIN 165 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~V-Gs~la~~L~~~--~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~---~~~~~~v~i~~~ 165 (405)
|+++++||+|||| |++ |..++..|+.. ++.+ .+|.| +|++++++++. .|+.+.. .....+++.+++
T Consensus 24 m~m~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~--~eV~L----~Di~~e~~~~~-~~~~~~~l~~~~~~~~I~~t~D 95 (472)
T 1u8x_X 24 MKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPI--RKLKL----YDNDKERQDRI-AGACDVFIREKAPDIEFAATTD 95 (472)
T ss_dssp --CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSCE--EEEEE----ECSCHHHHHHH-HHHHHHHHHHHCTTSEEEEESC
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHHhCCCCCCC--CEEEE----EeCCHHHHHHH-HHHHHHHhccCCCCCEEEEECC
Confidence 3333579999996 888 55578888876 5412 13554 45666888874 4665432 123346777666
Q ss_pred cccccCCCcEEEEeCCcCCCCCCch--------------------hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMER--------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r--------------------~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+++++|||+||++++.++++|++| ++++.||+++++++++.|+++| |+||+|++|||+
T Consensus 96 ~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPv 174 (472)
T 1u8x_X 96 PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPA 174 (472)
T ss_dssp HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCH
T ss_pred HHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcH
Confidence 6699999999999999888887777 4458999999999999999997 999999999999
Q ss_pred hHHHHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCC-CCceeEEEEe-----------e-cCCCcccccccceE
Q 015501 226 NTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-----------N-HSTTQVPDFLNARI 292 (405)
Q Consensus 226 d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~-~~V~~~~V~G-----------~-HG~~~vp~~S~a~I 292 (405)
|++|++++|.+| +.|+||+|+.++ |+++.+|+.+|+++ ++|+. +|+| + ||++++|.||...+
T Consensus 175 di~T~~~~k~~p--~~rViG~c~~~~--r~~~~la~~lgv~~~~~v~~-~v~GlNH~~W~~~~~~~hG~d~~p~~~~~~~ 249 (472)
T 1u8x_X 175 AIVAEATRRLRP--NSKILNICDMPV--GIEDRMAQILGLSSRKEMKV-RYYGLNHFGWWTSIQDQEGNDLMPKLKEHVS 249 (472)
T ss_dssp HHHHHHHHHHST--TCCEEECCSHHH--HHHHHHHHHHTCSCGGGEEE-EEEEETTEEEEEEEEETTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCEEEeCCcHH--HHHHHHHHHhCcCchhceeE-EEeccchhhheeeeEeCCCCEehHhHHHHHH
Confidence 999999999873 249999999986 99999999999997 99995 8899 9 99999999998654
Q ss_pred -cC-c----------chH-hhhhh------------cc---c-c-HHHHHH----------HHHh----hhHHHHH-h--
Q 015501 293 -NG-L----------PVK-EIIKD------------HK---W-L-EEGFTE----------TIQK----RGGLLIK-K-- 325 (405)
Q Consensus 293 -~G-~----------p~~-~~~~~------------~~---~-~-~~el~~----------~v~~----~~~~ii~-~-- 325 (405)
+| . |+. +++.. .. | . .+++.+ .+++ ..+++++ .
T Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~ 329 (472)
T 1u8x_X 250 QYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITR 329 (472)
T ss_dssp HHSSCCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHH
T ss_pred hcCCCccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33 1 111 22110 00 1 0 122211 2222 2223333 2
Q ss_pred cC---Cc-----hHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCccc-CCCCceEEEEeEEEcCCCceeeecCCCCCH
Q 015501 326 WG---RS-----SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDD 396 (405)
Q Consensus 326 ~G---~~-----~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~y-gi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~ 396 (405)
+| .+ .++..|..|+++|. +|++.++++||+++| .| |+|+|+++|+||+||++|+++++. .+|++
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~ii~AI~-----~d~~~v~~vsv~n~G-~i~glp~d~~veVP~vvg~~Gi~pi~~-~~Lp~ 402 (472)
T 1u8x_X 330 EQSSENSEIKIDDHASYIVDLARAIA-----YNTGERMLLIVENNG-AIANFDPTAMVEVPCIVGSNGPEPITV-GTIPQ 402 (472)
T ss_dssp HTSCCSCSSCCCTTTHHHHHHHHHHH-----HTCCEEEEEEEECTT-SBTTSCTTSEEEEEEEEETTEEEECCC-BCCCH
T ss_pred cCCcccccccccHHHHHHHHHHHHHh-----cCCCeEEEEEeecCc-eecCcCCCeEEEEeEEEcCCCceEeec-CCCCH
Confidence 44 22 23667778888877 689999999999999 56 799999999999999999999985 89999
Q ss_pred HHHHHHhh
Q 015501 397 YLRKRIAK 404 (405)
Q Consensus 397 ~E~~~l~~ 404 (405)
+|+++++.
T Consensus 403 ~~~~l~~~ 410 (472)
T 1u8x_X 403 FQKGLMEQ 410 (472)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=287.91 Aligned_cols=283 Identities=16% Similarity=0.129 Sum_probs=205.2
Q ss_pred CCCEEEEEcCCCchH--HHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 95 KMVNIAVSGAAGMIA--NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VG--s~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
+.+||+|||| |++| ..++..|+....+. .+|.| + |+++++++.... +.+.......+++.+++..+|++|
T Consensus 4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~--geV~L--~--Di~~e~le~~~~-~~~~l~~~~~~I~~TtD~~eAl~d 75 (450)
T 3fef_A 4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMS--GTVAL--Y--DLDFEAAQKNEV-IGNHSGNGRWRYEAVSTLKKALSA 75 (450)
T ss_dssp CCEEEEEETT-TCSSHHHHHHHHHHHCSSCC--EEEEE--E--CSSHHHHHHHHH-HHTTSTTSCEEEEEESSHHHHHTT
T ss_pred CCCEEEEECC-ChhHhHHHHHHHHHhccccC--CeEEE--E--eCCHHHHHHHHH-HHHHHhccCCeEEEECCHHHHhcC
Confidence 4579999995 9985 57888888654321 13544 3 444555542211 111111133467778888899999
Q ss_pred CcEEEEeCC------------cCCCCCCchh--hhH--------HhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 015501 173 AEWALLIGA------------KPRGPGMERA--GLL--------DINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (405)
Q Consensus 173 ADiVIi~~g------------~~~k~g~~r~--~ll--------~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~ 230 (405)
||+||++.. .|+|+|+.|. +.. .+|++++.++++.|+++| |+||+|++|||+|++|+
T Consensus 76 ADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~-p~a~~i~~tNPvdi~t~ 154 (450)
T 3fef_A 76 ADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYA-PESWVINYTNPMSVCTR 154 (450)
T ss_dssp CSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHH
T ss_pred CCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHH
Confidence 999999763 5899999766 544 499999999999999997 99999999999999999
Q ss_pred HHHHHCCCCCCCceeecchhhHHHHHHHHHHHh----C---CCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhh-
Q 015501 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKA----G---VFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEII- 301 (405)
Q Consensus 231 ~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l----~---v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~- 301 (405)
+++|..| +.|+||+|+.+ .++++.+|+.+ | +++++|+. .+.| || +.||++++++|+++.+.+
T Consensus 155 ~~~k~~p--~~rviG~C~~~--~~~~~~~a~~l~~~lg~~~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~ 225 (450)
T 3fef_A 155 VLYKVFP--GIKAIGCCHEV--FGTQKLLAEMVTERLGIEVPRREDIRV-NVLGINH----FTWITKASYRHIDLLPIFR 225 (450)
T ss_dssp HHHHHCT--TCEEEECCSHH--HHHHHHHHHHHHHHHCCCCSCGGGEEE-EEEEETT----EEEEEEEEETTEEHHHHHH
T ss_pred HHHHHCC--CCCEEEeCCcH--HHHHHHHHHHHHhhcCCCCCChhHeEE-EEeeecC----eEeEEEEEECCEEChHHHH
Confidence 9998743 24999999994 89999999999 5 78999994 8899 99 999999999999876522
Q ss_pred ---hh---c-------cccH----------HHHHHH----------------------------------------HHhh
Q 015501 302 ---KD---H-------KWLE----------EGFTET----------------------------------------IQKR 318 (405)
Q Consensus 302 ---~~---~-------~~~~----------~el~~~----------------------------------------v~~~ 318 (405)
.+ . .|.. -++.+. +.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~ 305 (450)
T 3fef_A 226 EFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEK 305 (450)
T ss_dssp HHHHHHTTTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHH
T ss_pred HHHHhhcccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHH
Confidence 11 0 1100 011000 0000
Q ss_pred h---HHHHH------hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeee
Q 015501 319 G---GLLIK------KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELV 389 (405)
Q Consensus 319 ~---~~ii~------~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv 389 (405)
. .++.. .+++ +..|+.|+++|. +|++.++++||+++|..+|+|+|+++|+||++|++|++++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~---~e~~~~ii~aI~-----~d~~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~ 377 (450)
T 3fef_A 306 RQETERLIVQQRGVAEKAS---GEEGVNIIAALL-----GLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPIL 377 (450)
T ss_dssp HHHHHHHHHTTCCCCCSCC---SCCHHHHHHHHT-----TSCCEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBC
T ss_pred HHHHHHHhcCCcCcCcCcc---HHHHHHHHHHHH-----cCCCeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecc
Confidence 0 00111 0111 223566766665 78999999999999943499999999999999999999988
Q ss_pred cCCCCCHHHHHHHhh
Q 015501 390 KDVIFDDYLRKRIAK 404 (405)
Q Consensus 390 ~~~~L~~~E~~~l~~ 404 (405)
. .+|++.+++.++.
T Consensus 378 ~-g~Lp~~~~~l~~~ 391 (450)
T 3fef_A 378 S-GALPKGVEMLAAR 391 (450)
T ss_dssp C-CCCCHHHHHHHHH
T ss_pred c-CCCCHHHHHHHHH
Confidence 5 7999999998763
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=280.84 Aligned_cols=283 Identities=16% Similarity=0.161 Sum_probs=202.7
Q ss_pred CCEEEEEcCCCchH--HHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhc--CCCcceEEEecCccccc
Q 015501 96 MVNIAVSGAAGMIA--NHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSL--FPLLREVKIGINPYELF 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VG--s~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~--~~~~~~v~i~~~~~eal 170 (405)
++||+|||| |+|| .+++..|+.. ++.+ .+|.| +|++++++++......+.. .....+++.+++.++++
T Consensus 3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~--~eV~L----~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal 75 (480)
T 1obb_A 3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSG--STVTL----MDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI 75 (480)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTT--CEEEE----ECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHhcCcCCC--CEEEE----EeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHh
Confidence 579999995 9985 4457788743 3323 24665 4566677777433322221 12334677766666999
Q ss_pred CCCcEEEEeCCc------------CCCCCCch--h------------hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 171 EDAEWALLIGAK------------PRGPGMER--A------------GLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 171 ~dADiVIi~~g~------------~~k~g~~r--~------------~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+|||+||++++. |+|+|+.| . .++.+|+++++++++.|+++| |+||+|++|||
T Consensus 76 ~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNP 154 (480)
T 1obb_A 76 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQAANP 154 (480)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEECSSC
T ss_pred CCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 999999999864 56677655 3 358999999999999999997 99999999999
Q ss_pred hhHHHHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhhhh
Q 015501 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD 303 (405)
Q Consensus 225 ~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~~~ 303 (405)
+|++|++++|+. +.|+||+||.+|+ +++++ +.+|+++++|+. +|+| || +.||.+.+.+|+.+...+.+
T Consensus 155 vdi~t~~~~k~p---~~rviG~c~~~~~--~~~~l-~~lgv~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~ 223 (480)
T 1obb_A 155 IFEGTTLVTRTV---PIKAVGFCHGHYG--VMEIV-EKLGLEEEKVDW-QVAGVNH----GIWLNRFRYNGGNAYPLLDK 223 (480)
T ss_dssp HHHHHHHHHHHS---CSEEEEECSGGGH--HHHHH-HHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHH
T ss_pred HHHHHHHHHHCC---CCcEEecCCCHHH--HHHHH-HHhCCCHHHceE-EEEeecc----hhhhhheeeCCeEcHHHHHH
Confidence 999999998842 3499999999995 78999 999999999995 8999 99 88888887777553221100
Q ss_pred ----------------------------------c-------ccc------H-------------H-----H-------H
Q 015501 304 ----------------------------------H-------KWL------E-------------E-----G-------F 311 (405)
Q Consensus 304 ----------------------------------~-------~~~------~-------------~-----e-------l 311 (405)
. +|. . + + .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~ 303 (480)
T 1obb_A 224 WIEEKSKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKV 303 (480)
T ss_dssp HHHHTGGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHccCccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHH
Confidence 0 111 1 0 0 0
Q ss_pred HHHHHhhhHHHHHhc---C--------Cc------------------hHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeC
Q 015501 312 TETIQKRGGLLIKKW---G--------RS------------------SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 362 (405)
Q Consensus 312 ~~~v~~~~~~ii~~~---G--------~~------------------~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~ 362 (405)
.+.+.+.-+++++.. . .+ ..+..|..|+++|. +|++.++.++|.++
T Consensus 304 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~-----~~~~~~~~vnv~N~ 378 (480)
T 1obb_A 304 TEITKKVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALL-----NDNKARFVVNIPNK 378 (480)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHH-----HCCCEEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHH-----hCCCeEEEEEeeCC
Confidence 000111111222211 0 00 01245778888887 68999999999999
Q ss_pred CcccCCCCceEEEEeEEEcCCCceeeecCCC-CCHHHHHH-Hh
Q 015501 363 GNPYGIAEDIVFSMPCRSKGDGDYELVKDVI-FDDYLRKR-IA 403 (405)
Q Consensus 363 G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~-L~~~E~~~-l~ 403 (405)
|...|+|+|+++++||+++++|+.++.. .+ |.+..+.. ++
T Consensus 379 G~I~~lp~d~vVEvp~~v~~~G~~p~~~-g~~lP~~~~~l~~~ 420 (480)
T 1obb_A 379 GIIHGIDDDVVVEVPALVDKNGIHPEKI-EPPLPDRVVKYYLR 420 (480)
T ss_dssp TSSTTSCTTSEEEEEEEEETTEEEECCC-SSCCCHHHHHHTHH
T ss_pred ceeCCCCCCeEEEEEEEEcCCCCEeecc-CCCCCHHHHhHHHH
Confidence 9989999999999999999999999875 56 99888777 54
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=277.36 Aligned_cols=271 Identities=14% Similarity=0.097 Sum_probs=195.6
Q ss_pred CEEEEEcCCCchHHH--HHHHHHhcccCC-CCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEecCcccccC
Q 015501 97 VNIAVSGAAGMIANH--LLFKLAAGEVLG-PDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~--la~~L~~~~~~~-~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~ 171 (405)
|||+|||| |++|++ +...|+....++ .+.+|.| +|++++++++.+.++.+... ....+++.+++.++|++
T Consensus 1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L----~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~ 75 (477)
T 3u95_A 1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYL----MDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIE 75 (477)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEE----ECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHT
T ss_pred CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEE----ECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhC
Confidence 69999996 999877 445566655443 2223444 45566889988888877642 23346777888889999
Q ss_pred CCcEEEEeCCc-------------------CCCCCCchhhhH---------------HhhHHHHHHHHHHHHhhcCCCeE
Q 015501 172 DAEWALLIGAK-------------------PRGPGMERAGLL---------------DINGQIFAEQGKALNAVASRNVK 217 (405)
Q Consensus 172 dADiVIi~~g~-------------------~~k~g~~r~~ll---------------~~N~~i~~~i~~~i~~~a~p~a~ 217 (405)
||||||++++. |+|+|++|..+. .+|++++.++++.|+++| |+||
T Consensus 76 gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~-P~A~ 154 (477)
T 3u95_A 76 GADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMA-PKAY 154 (477)
T ss_dssp TCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHC-TTCE
T ss_pred CCCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhC-CCeE
Confidence 99999998753 457888766543 368999999999999998 9999
Q ss_pred EEEeCCchhHHHHHHHHHCCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcc
Q 015501 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLP 296 (405)
Q Consensus 218 vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p 296 (405)
+||+|||++++|++++|++ +. |+||.|.. .+....+++.||+++++|+- .+.| || +.||...+.+|+.
T Consensus 155 ~in~tNP~~i~t~a~~~~~-~~--k~vGlC~~---~~~~~~~~~~Lg~~~~~v~~-~~~GlNH----~~w~~~~~~~G~D 223 (477)
T 3u95_A 155 LMQTANPVFEITQAVRRWT-GA--NIIGFCHG---VAGVYEVFERLGLDPEEVDW-QVAGVNH----GIWLNRFRYRGKD 223 (477)
T ss_dssp EEECSSCHHHHHHHHHHHH-CC--CEEEECCG---GGHHHHHHHHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEE
T ss_pred EEEecChHHHHHHHHHHhC-CC--CeEEECCC---HHHHHHHHHHhCCCHHHcEE-EEeecCC----CeeeeeeeecCCc
Confidence 9999999999999999986 44 89999865 34445678889999999994 7799 99 8888888888865
Q ss_pred hHhhhhh----------------ccc-----------------------------cHH-------------------HHH
Q 015501 297 VKEIIKD----------------HKW-----------------------------LEE-------------------GFT 312 (405)
Q Consensus 297 ~~~~~~~----------------~~~-----------------------------~~~-------------------el~ 312 (405)
+...+.+ ..| ..+ .+.
T Consensus 224 ~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (477)
T 3u95_A 224 AYPLLDEWIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFH 303 (477)
T ss_dssp CHHHHHHHHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHH
T ss_pred ccHHHHHHHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHH
Confidence 4322110 000 000 011
Q ss_pred HHHHhhhH-------HHHH-------------hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCce
Q 015501 313 ETIQKRGG-------LLIK-------------KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 372 (405)
Q Consensus 313 ~~v~~~~~-------~ii~-------------~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv 372 (405)
+.+++... ++.+ ..+...++..|+.|+++|. +|++.++.++|.++|..-++|+|+
T Consensus 304 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~AI~-----~~~~~~~~vNv~N~G~I~nLP~Da 378 (477)
T 3u95_A 304 EHLRRARERLIKLAEEVQENPHLKITEKHPEIFPKGRLSGEQHIPFINAIA-----NNKRVRLFLNVENQGALKDFPDDL 378 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHCTTTSCSSCCCCCSHHHHHHHHH-----HCCCEEEEEEEECTTSSTTSCTTS
T ss_pred HHHHHHHHHHHHHHHHHhhccchhcccccchhcccccccHHHHHHHHHHHh-----CCCCeEEEEEeecCcccCCCCCCc
Confidence 11111111 1110 0111223346778888887 689999999999999888999999
Q ss_pred EEEEeEEEcCCCceeee
Q 015501 373 VFSMPCRSKGDGDYELV 389 (405)
Q Consensus 373 ~~s~P~~ig~~Gv~~iv 389 (405)
++++||+|+++|+.++-
T Consensus 379 vVEVpc~Vd~~Gi~P~~ 395 (477)
T 3u95_A 379 VMELPVWVDSSGIHREK 395 (477)
T ss_dssp EEEEEEEEETTEEEECC
T ss_pred EEEEEEEEcCCCccccc
Confidence 99999999999998864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-06 Score=85.47 Aligned_cols=124 Identities=14% Similarity=0.097 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH-------Hhhhhc--C-C-----CcceE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDSL--F-P-----LLREV 160 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~-------DL~d~~--~-~-----~~~~v 160 (405)
..||+|||| |.+|+.+|..++..|+ ++.| +|.+++.++.-.. .+.+.. . . ....+
T Consensus 6 ~~~VaViGa-G~MG~giA~~~a~~G~-----~V~l----~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i 75 (319)
T 3ado_A 6 AGDVLIVGS-GLVGRSWAMLFASGGF-----RVKL----YDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLI 75 (319)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----CEEE----ECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTE
T ss_pred CCeEEEECC-cHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhc
Confidence 469999995 9999999999999886 4665 3444444332111 111110 0 1 11356
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCC
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP 240 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~ 240 (405)
+.+++..+++++||+||-+. | +|.++-+++-+.|.++++|++++ .||...+...-+.... ..|
T Consensus 76 ~~~~~l~~a~~~ad~ViEav--~------------E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~is~ia~~~-~~p 138 (319)
T 3ado_A 76 SSCTNLAEAVEGVVHIQECV--P------------ENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLLPSKLFTGL-AHV 138 (319)
T ss_dssp EEECCHHHHTTTEEEEEECC--C------------SCHHHHHHHHHHHHTTCCSSSEE--EECCSSCCHHHHHTTC-TTG
T ss_pred ccccchHhHhccCcEEeecc--c------------cHHHHHHHHHHHHHHHhhhccee--ehhhhhccchhhhhhc-cCC
Confidence 77777778999999999762 2 35789999999999999888876 8887765444443333 334
Q ss_pred CCceee
Q 015501 241 AKNFHA 246 (405)
Q Consensus 241 ~k~ig~ 246 (405)
.|++|+
T Consensus 139 ~r~ig~ 144 (319)
T 3ado_A 139 KQCIVA 144 (319)
T ss_dssp GGEEEE
T ss_pred CcEEEe
Confidence 566654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=6.5e-06 Score=79.32 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=67.4
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh----hc-CC-----------
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL-FP----------- 155 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d----~~-~~----------- 155 (405)
|..+|+||+|||+ |.+|..+|..|+..|. ++.+ +|+++++++.....+.+ .. ..
T Consensus 11 ~~~~~~~I~VIG~-G~mG~~iA~~la~~G~-----~V~~----~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~ 80 (302)
T 1f0y_A 11 KKIIVKHVTVIGG-GLMGAGIAQVAAATGH-----TVVL----VDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEF 80 (302)
T ss_dssp -CCCCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred ccccCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhh
Confidence 3445789999995 9999999999998764 3554 45665655532111110 00 00
Q ss_pred ---CcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 156 ---LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 156 ---~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
....++.+++..+++++||+||++.. . +..+.+++.+.+.+++.++++|+..++.
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~aD~Vi~avp--~------------~~~~~~~v~~~l~~~~~~~~iv~s~ts~ 138 (302)
T 1f0y_A 81 VEKTLSTIATSTDAASVVHSTDLVVEAIV--E------------NLKVKNELFKRLDKFAAEHTIFASNTSS 138 (302)
T ss_dssp HHHHHHTEEEESCHHHHTTSCSEEEECCC--S------------CHHHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred HHHHHhceEEecCHHHhhcCCCEEEEcCc--C------------cHHHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 01246666666669999999998742 1 2345556667777777567766544443
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=5.8e-06 Score=79.13 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc----------CC-----Ccce
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----------FP-----LLRE 159 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~----------~~-----~~~~ 159 (405)
+++||+|||+ |.+|+.+|..|+..|. ++.+ +|+++++++.....+.+.. .. ....
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~-----~V~l----~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~ 72 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGF-----AVTA----YDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG 72 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcC
Confidence 4679999995 9999999999998875 3554 4666666654433321110 00 0123
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 160 v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
++.+++..+++++||+||.+... +.++..++.+.+.++++++++++..|...
T Consensus 73 i~~~~~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~il~s~tS~~ 124 (283)
T 4e12_A 73 IRYSDDLAQAVKDADLVIEAVPE--------------SLDLKRDIYTKLGELAPAKTIFATNSSTL 124 (283)
T ss_dssp CEEESCHHHHTTTCSEEEECCCS--------------CHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred eEEeCCHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 45666666789999999987431 23566666677777776778776555433
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=80.26 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=78.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc----CCCcceEEEecCcccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYEL 169 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~ea 169 (405)
..+|||+|||+ |.+|..++..|+..|. ++.+ .+++++.++....+-.... ..+..++.++++..++
T Consensus 27 ~~~mkI~VIGa-G~mG~alA~~La~~G~-----~V~l----~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea 96 (356)
T 3k96_A 27 PFKHPIAILGA-GSWGTALALVLARKGQ-----KVRL----WSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKAS 96 (356)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHTTTC-----CEEE----ECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHH
T ss_pred ccCCeEEEECc-cHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHH
Confidence 34689999995 9999999999998764 3655 4555565554433211100 0122357777777789
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH----HHHHHHHHC
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNA 236 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~----~t~~~~k~s 236 (405)
+++||+||++.. .+.++++.+.+..+..++.+||.++|-.+. +..++.+..
T Consensus 97 ~~~aDvVilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l 151 (356)
T 3k96_A 97 LEGVTDILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATEL 151 (356)
T ss_dssp HTTCCEEEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHH
T ss_pred HhcCCEEEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHc
Confidence 999999998732 245777778888877678888888885543 334554443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=82.01 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=67.6
Q ss_pred hhccCCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-------------
Q 015501 91 KSWKKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL------------- 156 (405)
Q Consensus 91 ~~~~~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~------------- 156 (405)
+.+.++|||+||| +|.+|..+|..|+.. |.. ++.+ .|+++++..+.+..|.....+.
T Consensus 13 ~~~~~~mkIaVIG-lG~mG~~lA~~la~~~G~~----~V~~----~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~ 83 (478)
T 3g79_A 13 KERGPIKKIGVLG-MGYVGIPAAVLFADAPCFE----KVLG----FQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK 83 (478)
T ss_dssp HHHCSCCEEEEEC-CSTTHHHHHHHHHHSTTCC----EEEE----ECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH
T ss_pred hhcCCCCEEEEEC-cCHHHHHHHHHHHHhCCCC----eEEE----EECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh
Confidence 3445688999999 599999999999997 641 2444 4555552122222232211111
Q ss_pred ---cceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 157 ---LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 157 ---~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..++..+++ ++++++||+||++.+.|..+..++ ..+..-+...++.+.++..++.+||+-|
T Consensus 84 ~~~~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~S 147 (478)
T 3g79_A 84 VVKAGKFECTPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLES 147 (478)
T ss_dssp HHHTTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred hcccCCeEEeCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 235777777 899999999999866554322210 0112334444445555443444444433
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-05 Score=80.65 Aligned_cols=102 Identities=10% Similarity=0.071 Sum_probs=65.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH----hhhhc-C------CCcceEEE
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSL-F------PLLREVKI 162 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D----L~d~~-~------~~~~~v~i 162 (405)
.+++||+|||+ |.+|..+|..|+..|+ +|.+ .|+++++......+ +.... . ....+++.
T Consensus 52 ~~i~kVaVIGa-G~MG~~IA~~la~aG~-----~V~l----~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~ 121 (460)
T 3k6j_A 52 YDVNSVAIIGG-GTMGKAMAICFGLAGI-----ETFL----VVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI 121 (460)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----EECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE
Confidence 34689999995 9999999999999875 3554 34444432211111 11100 0 01234666
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE
Q 015501 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV 220 (405)
Q Consensus 163 ~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIv 220 (405)
+++ ++++++||+||.+.. .+..+.+++.+.+.++++|+++|+.
T Consensus 122 t~d-l~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIlas 164 (460)
T 3k6j_A 122 TSD-FHKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIFGT 164 (460)
T ss_dssp ESC-GGGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred eCC-HHHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 655 579999999998732 1356667777788888877887743
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.3e-05 Score=80.89 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-----CC---------CcceE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-----FP---------LLREV 160 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-----~~---------~~~~v 160 (405)
+++||+|||+ |.+|..+|..|+..|+ +|.+ .|+++++++.....+.... .. ...++
T Consensus 4 ~~~kVgVIGa-G~MG~~IA~~la~aG~-----~V~l----~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 73 (483)
T 3mog_A 4 NVQTVAVIGS-GTMGAGIAEVAASHGH-----QVLL----YDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRL 73 (483)
T ss_dssp CCCCEEEECC-SHHHHHHHHHHHHTTC-----CEEE----ECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC-----eEEE----EECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhce
Confidence 4679999995 9999999999999875 3655 5666666654433221110 00 11245
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV 220 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIv 220 (405)
+.+++ ++++++||+||.+.. . +..+.+++.+.+.++++++++++.
T Consensus 74 ~~~~~-~~~~~~aDlVIeAVp--e------------~~~vk~~v~~~l~~~~~~~~Ilas 118 (483)
T 3mog_A 74 IPVTD-IHALAAADLVIEAAS--E------------RLEVKKALFAQLAEVCPPQTLLTT 118 (483)
T ss_dssp EEECC-GGGGGGCSEEEECCC--C------------CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred eEeCC-HHHhcCCCEEEEcCC--C------------cHHHHHHHHHHHHHhhccCcEEEe
Confidence 66554 578999999998732 1 345666777778888767777643
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=72.12 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=66.5
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
++.+|+||+||| +|.+|..++..|...+. ++.+ . .|++.++++..+.++.. ....+..++++
T Consensus 19 ~~m~mmkI~IIG-~G~mG~~la~~l~~~g~-----~V~~-v--~~r~~~~~~~l~~~~g~---------~~~~~~~~~~~ 80 (220)
T 4huj_A 19 YFQSMTTYAIIG-AGAIGSALAERFTAAQI-----PAII-A--NSRGPASLSSVTDRFGA---------SVKAVELKDAL 80 (220)
T ss_dssp TGGGSCCEEEEE-CHHHHHHHHHHHHHTTC-----CEEE-E--CTTCGGGGHHHHHHHTT---------TEEECCHHHHT
T ss_pred hhhcCCEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE-E--ECCCHHHHHHHHHHhCC---------CcccChHHHHh
Confidence 344578999999 59999999999998764 2433 1 46677777765544321 12235677899
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++|+||++.. + ..+.++.+.+.. . ++.+||.++||..
T Consensus 81 ~aDvVilavp----~------------~~~~~v~~~l~~-~-~~~ivi~~~~g~~ 117 (220)
T 4huj_A 81 QADVVILAVP----Y------------DSIADIVTQVSD-W-GGQIVVDASNAID 117 (220)
T ss_dssp TSSEEEEESC----G------------GGHHHHHTTCSC-C-TTCEEEECCCCBC
T ss_pred cCCEEEEeCC----h------------HHHHHHHHHhhc-c-CCCEEEEcCCCCC
Confidence 9999998742 1 233444444444 3 5678999999985
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.4e-05 Score=82.69 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH---HH-Hhhh-------h-cCCCcceEEEe
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AM-ELED-------S-LFPLLREVKIG 163 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~---a~-DL~d-------~-~~~~~~~v~i~ 163 (405)
..||+|||| |.+|+.+|..++..|+ ++.| .|.+++.++.- .. -+.. . .......++.
T Consensus 316 i~~v~ViGa-G~MG~gIA~~~a~aG~-----~V~l----~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~- 384 (742)
T 3zwc_A 316 VSSVGVLGL-GTMGRGIAISFARVGI-----SVVA----VESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF- 384 (742)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTC-----EEEE----ECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC-----chhc----ccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-
Confidence 579999995 9999999999999876 4555 34444433211 11 0110 0 0011223444
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCc
Q 015501 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN 243 (405)
Q Consensus 164 ~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ 243 (405)
+++++++++||+||-+. .+|.++-+++-+.+.++++|++++ .||...+-...+.+.. ..|.|+
T Consensus 385 ~~~~~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~i~~ia~~~-~~p~r~ 447 (742)
T 3zwc_A 385 SSSTKELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDIASST-DRPQLV 447 (742)
T ss_dssp ESCGGGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHHHTTS-SCGGGE
T ss_pred cCcHHHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcCChHHHHhhc-CCcccc
Confidence 45689999999999863 235788999999999999888876 8886653333333333 344465
Q ss_pred eee
Q 015501 244 FHA 246 (405)
Q Consensus 244 ig~ 246 (405)
+|+
T Consensus 448 ig~ 450 (742)
T 3zwc_A 448 IGT 450 (742)
T ss_dssp EEE
T ss_pred ccc
Confidence 553
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.8e-05 Score=78.81 Aligned_cols=105 Identities=9% Similarity=0.085 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh--------hhc-CC--C-cceEEE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE--------DSL-FP--L-LREVKI 162 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~--------d~~-~~--~-~~~v~i 162 (405)
+++||+|||+ |.+|..+|..|+..|+ +|.+ .|++++.++.....++ ... .+ . .....+
T Consensus 36 ~~~kV~VIGa-G~MG~~iA~~la~~G~-----~V~l----~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 105 (463)
T 1zcj_A 36 PVSSVGVLGL-GTMGRGIAISFARVGI-----SVVA----VESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF 105 (463)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTC-----EEEE----ECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh
Confidence 4679999995 9999999999998775 3554 4555555543222111 100 00 0 012344
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 163 ~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++ +++++++||+||++.. . +..+.+++.+.+..++.++++|+. |...
T Consensus 106 ~~-~~~~~~~aDlVIeaVp--e------------~~~~k~~v~~~l~~~~~~~~ii~s--nTs~ 152 (463)
T 1zcj_A 106 SS-STKELSTVDLVVEAVF--E------------DMNLKKKVFAELSALCKPGAFLCT--NTSA 152 (463)
T ss_dssp ES-CGGGGTTCSEEEECCC--S------------CHHHHHHHHHHHHHHSCTTCEEEE--CCSS
T ss_pred cC-CHHHHCCCCEEEEcCC--C------------CHHHHHHHHHHHHhhCCCCeEEEe--CCCC
Confidence 44 4588999999999742 1 345566666777777767777654 5443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.8e-05 Score=80.15 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=72.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH--------hhhhcC-CCcceEEEecCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLF-PLLREVKIGINP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D--------L~d~~~-~~~~~v~i~~~~ 166 (405)
+|||+||| +|.||..++..|+..+. + .++.+ +|+++++++..... +.+... .....++.+++.
T Consensus 9 ~mkI~VIG-~G~vG~~~A~~La~~g~-g--~~V~~----~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~ 80 (481)
T 2o3j_A 9 VSKVVCVG-AGYVGGPTCAMIAHKCP-H--ITVTV----VDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDI 80 (481)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHHCT-T--SEEEE----ECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-C--CEEEE----EECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCH
Confidence 57999999 59999999999998631 1 13444 46666666543211 100000 001236676666
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe-CCchhHH
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNTN 228 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv-tNP~d~~ 228 (405)
.+++++||+||++.+.|.+.+.++.+. .-+...+.+.++.|.++..++.+|+.. |+|..+.
T Consensus 81 ~~~~~~aDvvii~Vptp~~~~g~~~~~-~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~ 142 (481)
T 2o3j_A 81 PKAIAEADLIFISVNTPTKMYGRGKGM-APDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAA 142 (481)
T ss_dssp HHHHHHCSEEEECCCCCBCCSSTTTTT-SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH
T ss_pred HHHhhcCCEEEEecCCccccccccccC-CCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHH
Confidence 788999999999876654433222220 112344556666777766455555543 6786543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.7e-05 Score=74.56 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||+|||+ |.+|..++..|+..++-. ..|.+ .|++.++++....++ .+.++.+..+++++||+
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~--~~V~v----~dr~~~~~~~l~~~~---------gi~~~~~~~~~~~~aDv 66 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDP--NRICV----TNRSLDKLDFFKEKC---------GVHTTQDNRQGALNADV 66 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCG--GGEEE----ECSSSHHHHHHHHTT---------CCEEESCHHHHHSSCSE
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCC--CeEEE----EeCCHHHHHHHHHHc---------CCEEeCChHHHHhcCCe
Confidence 579999995 999999999999887411 24555 567767665443321 23455677899999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh-cCCCeEEEEeCCchh
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNPCN 226 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~-a~p~a~vIvvtNP~d 226 (405)
||++.. | +.+.++.+.+..+ .+++.+||.+++...
T Consensus 67 Vilav~----p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~ 102 (280)
T 3tri_A 67 VVLAVK----P------------HQIKMVCEELKDILSETKILVISLAVGVT 102 (280)
T ss_dssp EEECSC----G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred EEEEeC----H------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence 998742 1 2334455555554 446667777777654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.90 E-value=4.4e-05 Score=78.15 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=69.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC----------cceEEEecCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGINP 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~----------~~~v~i~~~~ 166 (405)
|||+||| +|.||..+|..|+..|. ++.+ +|+++++++...........+- ..+++.+++.
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~-----~V~~----~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~ 72 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGA-----NVRC----IDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEI 72 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCC-----EEEE----EECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCH
Confidence 6999999 59999999999998764 3544 4666666654433110000000 1346777777
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+++++||+||++.+.|..+.. .-+...+.++++.+.++..++.+|+..+
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred HHHHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 7789999999998665543222 1223455666666666654555665555
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.8e-05 Score=82.35 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh----c-C---------CCcceE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L-F---------PLLREV 160 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~----~-~---------~~~~~v 160 (405)
+++||+|||+ |.+|+.+|..|+..|+ ++.+ .|++++.++.....+.+. . . ....++
T Consensus 311 ~~~kV~VIGa-G~MG~~iA~~la~aG~-----~V~l----~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 380 (725)
T 2wtb_A 311 KIKKVAIIGG-GLMGSGIATALILSNY-----PVIL----KEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLL 380 (725)
T ss_dssp CCCCEEEECC-SHHHHHHHHHHHTTTC-----CEEE----ECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSE
T ss_pred cCcEEEEEcC-CHhhHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcce
Confidence 3678999995 9999999999998875 3655 456656554321111111 0 0 012346
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+++ ++++++||+||.+.. .+..+.+++...+.+++.+++++ ++|.
T Consensus 381 ~~~~d-~~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asnt 427 (725)
T 2wtb_A 381 KGSLD-YESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL--ASNT 427 (725)
T ss_dssp EEESS-SGGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECC
T ss_pred EEeCC-HHHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EeCC
Confidence 66654 589999999998732 13456666777788887667755 5554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=97.84 E-value=4e-05 Score=78.69 Aligned_cols=125 Identities=11% Similarity=0.052 Sum_probs=71.7
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH-----------HhhhhcCCCcceE
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-----------ELEDSLFPLLREV 160 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~-----------DL~d~~~~~~~~v 160 (405)
+|++||||+||| +|.||..++..|+..+. + .++.+ +|+++++++.... ++.... ....+
T Consensus 1 ~M~~~mkI~VIG-~G~mG~~lA~~La~~g~-G--~~V~~----~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~--~~~~~ 70 (467)
T 2q3e_A 1 SMFEIKKICCIG-AGYVGGPTCSVIAHMCP-E--IRVTV----VDVNESRINAWNSPTLPIYEPGLKEVVESC--RGKNL 70 (467)
T ss_dssp -CCCCCEEEEEC-CSTTHHHHHHHHHHHCT-T--SEEEE----ECSCHHHHHHHTSSSCSSCCTTHHHHHHHH--BTTTE
T ss_pred CCCCccEEEEEC-CCHHHHHHHHHHHhcCC-C--CEEEE----EECCHHHHHHHhCCCCCcCCCCHHHHHHHh--hcCCE
Confidence 356678999999 59999999999998731 1 13444 4666666554211 011000 00246
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe-CCchhH
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNT 227 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv-tNP~d~ 227 (405)
..+++..+++++||+||++...|........+ -.-+...+.+.++.+.++..++.+|+.. |+|...
T Consensus 71 ~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~ 137 (467)
T 2q3e_A 71 FFSTNIDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA 137 (467)
T ss_dssp EEESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred EEECCHHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence 66666678899999999986544321110000 0112345556666666665455666554 567654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.3e-05 Score=75.96 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=67.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH--------hhhhcCC-C-cceEEEecCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP-L-LREVKIGINP 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D--------L~d~~~~-~-~~~v~i~~~~ 166 (405)
|||+||| +|.||..++..|+..|. ++.+ +|+++++++..... +.+.... . ..++..+++.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~-----~V~~----~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~ 70 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH-----EVIG----VDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDF 70 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCH
Confidence 5999999 59999999999998764 3444 46666666544321 0000000 0 1246666666
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCC---CeEEEEe-CCchhH
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR---NVKVIVV-GNPCNT 227 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p---~a~vIvv-tNP~d~ 227 (405)
.+++++||+||++...|..... ..| ...+.+.++.+.++..+ +.+|+.. |+|...
T Consensus 71 ~~~~~~aDvviiaVptp~~~~~-~~d-----l~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~ 129 (436)
T 1mv8_A 71 KKAVLDSDVSFICVGTPSKKNG-DLD-----LGYIETVCREIGFAIREKSERHTVVVRSTVLPGT 129 (436)
T ss_dssp HHHHHTCSEEEECCCCCBCTTS-SBC-----CHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred HHHhccCCEEEEEcCCCcccCC-Ccc-----hHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence 6789999999998654432211 122 22333444444444434 5666554 788765
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.6e-05 Score=78.51 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=71.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh--------hhcCCCcceEEEecCccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE--------DSLFPLLREVKIGINPYE 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~--------d~~~~~~~~v~i~~~~~e 168 (405)
|||+|||+ |.||..++..|+. +. ++.+ +|+++++++....... +.......++..+++..+
T Consensus 1 MkI~VIG~-G~vG~~~A~~La~-G~-----~V~~----~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~ 69 (402)
T 1dlj_A 1 MKIAVAGS-GYVGLSLGVLLSL-QN-----EVTI----VDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA 69 (402)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TS-----EEEE----ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred CEEEEECC-CHHHHHHHHHHhC-CC-----EEEE----EECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence 59999995 9999999999987 53 3544 4666666554332110 000000113566666668
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE-eCCchhHHHHHHHH
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNTNALICLK 234 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIv-vtNP~d~~t~~~~k 234 (405)
++++||+||++...+...+..+.|+ ..+.++++.+.+ ..++.+||. .|||.+..-.+...
T Consensus 70 ~~~~aDvviiavpt~~~~~~~~~dl-----~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~ 130 (402)
T 1dlj_A 70 AYKEAELVIIATPTNYNSRINYFDT-----QHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQK 130 (402)
T ss_dssp HHHHCSEEEECCCCCEETTTTEECC-----HHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHH
T ss_pred HhcCCCEEEEecCCCcccCCCCccH-----HHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHH
Confidence 8999999999855432122223332 234444444444 346667666 79999876665543
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.7e-05 Score=75.93 Aligned_cols=121 Identities=11% Similarity=0.161 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH--------HhhhhcCCCcceEEEecCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLFPLLREVKIGINP 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~--------DL~d~~~~~~~~v~i~~~~ 166 (405)
++|||+||| +|.||..+|..|+. +. ++.+ .|+++++++.... ++++.......+++.+++.
T Consensus 35 ~~mkIaVIG-lG~mG~~lA~~La~-G~-----~V~~----~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~ 103 (432)
T 3pid_A 35 EFMKITISG-TGYVGLSNGVLIAQ-NH-----EVVA----LDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDK 103 (432)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHT-TS-----EEEE----ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHc-CC-----eEEE----EecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCH
Confidence 468999999 59999999999887 53 3544 4666666654432 1111100001257777777
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe-CCchhHHHHHH
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNTNALIC 232 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv-tNP~d~~t~~~ 232 (405)
.+++++||+||++...+..+.....| ...+.+.++.+.+. .++.+||+- |-|..+.-.+.
T Consensus 104 ~ea~~~aDvViiaVPt~~~~~~~~~D-----l~~V~~v~~~i~~l-~~g~iVV~~STv~pgtt~~l~ 164 (432)
T 3pid_A 104 HDAYRNADYVIIATPTDYDPKTNYFN-----TSTVEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDIK 164 (432)
T ss_dssp HHHHTTCSEEEECCCCEEETTTTEEE-----CHHHHHHHHHHHHH-CTTSEEEECSCCCTTHHHHHH
T ss_pred HHHHhCCCEEEEeCCCcccccccccc-----HHHHHHHHHHHHhc-CCCcEEEEeCCCChHHHHHHH
Confidence 89999999999974332111111111 22333334444443 466666554 45765544443
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00012 Score=68.82 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
+|||+|||+ |.+|..++..|...+. +.+.+ .|++.++++.....+ .+.+..+..+.++++|+
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~----~~v~~----~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~Dv 71 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGF----RIVQV----YSRTEESARELAQKV---------EAEYTTDLAEVNPYAKL 71 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTC----CEEEE----ECSSHHHHHHHHHHT---------TCEEESCGGGSCSCCSE
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCC----eEEEE----EeCCHHHHHHHHHHc---------CCceeCCHHHHhcCCCE
Confidence 479999995 9999999999998764 11343 466666665433221 12344566678899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
||++... ..+.++.+.+....+++.+|+..++
T Consensus 72 vi~av~~----------------~~~~~v~~~l~~~~~~~~ivv~~s~ 103 (266)
T 3d1l_A 72 YIVSLKD----------------SAFAELLQGIVEGKREEALMVHTAG 103 (266)
T ss_dssp EEECCCH----------------HHHHHHHHHHHTTCCTTCEEEECCT
T ss_pred EEEecCH----------------HHHHHHHHHHHhhcCCCcEEEECCC
Confidence 9987431 1235566666665556788888877
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.75 E-value=8e-05 Score=73.92 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCC--CCceEEEeccccchhh-----hHHHHHHHhhhhcC----CCcceEEEec
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQ-----ALEGVAMELEDSLF----PLLREVKIGI 164 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~--d~~i~L~l~~~d~~~~-----~l~g~a~DL~d~~~----~~~~~v~i~~ 164 (405)
|+||+|||+ |.+|+.++..|+..|.... ..++.+ .+++++ +++.....-....+ .+...+..++
T Consensus 21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~~----~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 95 (375)
T 1yj8_A 21 PLKISILGS-GNWASAISKVVGTNAKNNYLFENEVRM----WIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHS 95 (375)
T ss_dssp CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEEE----ECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEEE----EECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEEC
Confidence 468999995 9999999999998762110 013555 344444 44433221100000 1112466666
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHh----hcCCCeEEEEeCCch
Q 015501 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA----VASRNVKVIVVGNPC 225 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~----~a~p~a~vIvvtNP~ 225 (405)
+..+++++||+||++.. .+.+.++.+.+.. +..++.+||.++|-.
T Consensus 96 ~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi 144 (375)
T 1yj8_A 96 DLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGF 144 (375)
T ss_dssp STHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSC
T ss_pred CHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcc
Confidence 77788999999998732 1456666777776 555688888888853
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3e-05 Score=76.58 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC----CCcceEEEecCcccccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~----~~~~~v~i~~~~~eal~ 171 (405)
|+||+|||+ |.+|..++..|+..|. +|.+ +|++.++++.....-....+ .+...+..+.+..++++
T Consensus 15 M~kI~iIG~-G~mG~~la~~L~~~G~-----~V~~----~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (366)
T 1evy_A 15 LNKAVVFGS-GAFGTALAMVLSKKCR-----EVCV----WHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN 84 (366)
T ss_dssp EEEEEEECC-SHHHHHHHHHHTTTEE-----EEEE----ECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHc
Confidence 449999995 9999999999987663 3544 45665665544322111000 01124566666667889
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHH----HHhhcCC-CeEEEEeCCch
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKA----LNAVASR-NVKVIVVGNPC 225 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~----i~~~a~p-~a~vIvvtNP~ 225 (405)
++|+||++... +.+.++... +..+..+ +.+||.++|-.
T Consensus 85 ~aDvVilav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi 127 (366)
T 1evy_A 85 GAEIILFVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 127 (366)
T ss_dssp TCSSEEECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred CCCEEEECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence 99999987321 223344444 4443335 67788888754
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.70 E-value=3.3e-05 Score=72.16 Aligned_cols=100 Identities=12% Similarity=0.214 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||+||| +|.+|..++..|...+.... .++.+ +|+++++++..+.++ .+....+..+++++||+
T Consensus 2 ~~~i~iIG-~G~mG~~~a~~l~~~g~~~~-~~V~~----~~r~~~~~~~~~~~~---------g~~~~~~~~e~~~~aDv 66 (247)
T 3gt0_A 2 DKQIGFIG-CGNMGMAMIGGMINKNIVSS-NQIIC----SDLNTANLKNASEKY---------GLTTTTDNNEVAKNADI 66 (247)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTSSCG-GGEEE----ECSCHHHHHHHHHHH---------CCEECSCHHHHHHHCSE
T ss_pred CCeEEEEC-ccHHHHHHHHHHHhCCCCCC-CeEEE----EeCCHHHHHHHHHHh---------CCEEeCChHHHHHhCCE
Confidence 36999999 59999999999999876432 24554 567767666444322 13345567788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
||++. .| +.+.++.+.+..+..++..||..++-..
T Consensus 67 Vilav-~~---------------~~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 67 LILSI-KP---------------DLYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp EEECS-CT---------------TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred EEEEe-CH---------------HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 99874 21 2244455556665545666666666554
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=8.9e-05 Score=67.09 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=62.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||||+|.+|+.++..|+..+. ++.+ .+++.++++....++.... . ..++.. .+..++++++|+|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~D~V 68 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH-----EIVV----GSRREEKAEAKAAEYRRIA-G-DASITG-MKNEDAAEACDIA 68 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----EESSHHHHHHHHHHHHHHH-S-SCCEEE-EEHHHHHHHCSEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcccc-c-cCCCCh-hhHHHHHhcCCEE
Confidence 5899999679999999999998663 3544 4566565554333221111 1 012332 3455778999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|++... ..+.++.+.+.... ++.+++.++|+.+
T Consensus 69 i~~~~~----------------~~~~~~~~~l~~~~-~~~~vi~~~~g~~ 101 (212)
T 1jay_A 69 VLTIPW----------------EHAIDTARDLKNIL-REKIVVSPLVPVS 101 (212)
T ss_dssp EECSCH----------------HHHHHHHHHTHHHH-TTSEEEECCCCEE
T ss_pred EEeCCh----------------hhHHHHHHHHHHHc-CCCEEEEcCCCcC
Confidence 987431 11233444444444 4778999999765
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=7e-05 Score=72.92 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=64.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh--hHHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ--ALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~--~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
.++|||+|||+ |.+|..++..|...|.... .++.+ .|++.+ +++... .. .+.+..+..++++
T Consensus 20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~-~~V~v----~~r~~~~~~~~~l~----~~------G~~~~~~~~e~~~ 83 (322)
T 2izz_A 20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAA-HKIMA----SSPDMDLATVSALR----KM------GVKLTPHNKETVQ 83 (322)
T ss_dssp --CCCEEEESC-SHHHHHHHHHHHHTTSSCG-GGEEE----ECSCTTSHHHHHHH----HH------TCEEESCHHHHHH
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCCCc-ceEEE----ECCCccHHHHHHHH----Hc------CCEEeCChHHHhc
Confidence 33579999995 9999999999998874321 13554 455543 443222 11 1334556778889
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+||+||++.. | +.+.++.+.+.....++.+||.++|...
T Consensus 84 ~aDvVilav~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~ 122 (322)
T 2izz_A 84 HSDVLFLAVK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVT 122 (322)
T ss_dssp HCSEEEECSC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred cCCEEEEEeC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 9999999742 1 2344455556655446788888888654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00035 Score=66.61 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC-C--CcceEEEecCccc---c
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P--LLREVKIGINPYE---L 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~-~--~~~~v~i~~~~~e---a 169 (405)
||||+|||+ |.+|..++..|...|. ++.+ +|++.++++....+-..... + ...++.+++ ..+ +
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~----~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 71 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGN-----DVTL----IDQWPAHIEAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQ 71 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHCEEEEETTEEEEECCCEEC-GGGCCTT
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCC-----cEEE----EECCHHHHHHHHhCCEEEEeCCCeeEecceeec-chhhccc
Confidence 579999995 9999999999998764 3554 45665655543321000000 0 000112222 223 3
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
++++|+||++... ..+.++.+.+..+.+++..|+.++|..+.
T Consensus 72 ~~~~d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~ 113 (316)
T 2ew2_A 72 NEQVDLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH 113 (316)
T ss_dssp SCCCSEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred CCCCCEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 4499999987431 23455666677766578889889997763
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.68 E-value=9e-05 Score=69.26 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhh--HHHH--------HHHhhhhcCCCcceEEEec
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGV--------AMELEDSLFPLLREVKIGI 164 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~--l~g~--------a~DL~d~~~~~~~~v~i~~ 164 (405)
..+||+||| +|.+|.+++..|+..+. +|.+ .|++.++ .+.. ..++.... + .. ...
T Consensus 18 ~~~kIgiIG-~G~mG~alA~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~ 82 (245)
T 3dtt_A 18 QGMKIAVLG-TGTVGRTMAGALADLGH-----EVTI----GTRDPKATLARAEPDAMGAPPFSQWLPEH-P---HV-HLA 82 (245)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHTCC-------CCHHHHGGGS-T---TC-EEE
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EeCChhhhhhhhhhhhhcchhhhHHHhhc-C---ce-ecc
Confidence 368999999 59999999999998764 3544 4555554 1101 11222111 1 11 224
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+..+++++||+||++.... .-.+.+.+++ .... ++.+||.++||.+
T Consensus 83 ~~~e~~~~aDvVilavp~~------------~~~~~~~~i~---~~~l-~g~ivi~~s~~~~ 128 (245)
T 3dtt_A 83 AFADVAAGAELVVNATEGA------------SSIAALTAAG---AENL-AGKILVDIANPLD 128 (245)
T ss_dssp EHHHHHHHCSEEEECSCGG------------GHHHHHHHHC---HHHH-TTSEEEECCCCEE
T ss_pred CHHHHHhcCCEEEEccCcH------------HHHHHHHHhh---hhhc-CCCEEEECCCCCC
Confidence 5678889999999873211 1123333331 3333 6779999999873
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=9.1e-05 Score=80.01 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHH---HH-hhhhc-CC---------CcceE
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA---ME-LEDSL-FP---------LLREV 160 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a---~D-L~d~~-~~---------~~~~v 160 (405)
+.+||+|||+ |.+|+.+|..|+..|+ +|.+ .|+++++++... .+ +.... .. ...++
T Consensus 313 ~i~kV~VIGa-G~MG~~iA~~la~aG~-----~V~l----~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 382 (715)
T 1wdk_A 313 DVKQAAVLGA-GIMGGGIAYQSASKGT-----PILM----KDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGI 382 (715)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTC-----CEEE----ECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHE
T ss_pred cCCEEEEECC-ChhhHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCe
Confidence 4689999995 9999999999999875 3555 455555554311 11 11000 01 11246
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 015501 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (405)
Q Consensus 161 ~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vI 219 (405)
+.+++. +++++||+||.+.. .+..+.+++...+.++++++++++
T Consensus 383 ~~~~d~-~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Ila 426 (715)
T 1wdk_A 383 RPTLSY-GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAILA 426 (715)
T ss_dssp EEESSS-TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred EEECCH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEEE
Confidence 666554 89999999998732 134556667777888876777663
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00012 Score=75.38 Aligned_cols=111 Identities=7% Similarity=-0.017 Sum_probs=68.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC----------cceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~----------~~~v~i~~~ 165 (405)
.|||+||| +|.||..+|..|+..|. ++.+ +|+++++++.....-.....+- ..+++.+++
T Consensus 8 ~~~I~VIG-~G~vG~~lA~~la~~G~-----~V~~----~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd 77 (478)
T 2y0c_A 8 SMNLTIIG-SGSVGLVTGACLADIGH-----DVFC----LDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTD 77 (478)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECC
T ss_pred CceEEEEC-cCHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECC
Confidence 68999999 59999999999998764 3544 4566566554332100000000 124677777
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..+++++||+||++...|.+... . -+...+.++++.|.++..++.+|++-+
T Consensus 78 ~~~a~~~aDvviiaVptp~~~~~-~-----~dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 78 IEAAVAHGDVQFIAVGTPPDEDG-S-----ADLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp HHHHHHHCSEEEECCCCCBCTTS-S-----BCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred HHHHhhcCCEEEEEeCCCcccCC-C-----ccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66889999999998655432211 1 123455556666666665666665554
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.63 E-value=2.8e-05 Score=70.64 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=64.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-------Cc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NP 166 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-------~~ 166 (405)
.+|+||.|+||+|++|++++..|+..+. .|.+ .+++.+.+... ...+.+.. ..
T Consensus 2 ~~m~~ilItGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~-----------~~~~~~~~~Dl~d~~~~ 61 (227)
T 3dhn_A 2 EKVKKIVLIGASGFVGSALLNEALNRGF-----EVTA----VVRHPEKIKIE-----------NEHLKVKKADVSSLDEV 61 (227)
T ss_dssp -CCCEEEEETCCHHHHHHHHHHHHTTTC-----EEEE----ECSCGGGCCCC-----------CTTEEEECCCTTCHHHH
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-----EEEE----EEcCcccchhc-----------cCceEEEEecCCCHHHH
Confidence 4578999999999999999999998763 2443 34443332111 01222221 12
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.++++++|+||.+++.. .+..+.+..|......+.+.+.+.. . ..+|.++
T Consensus 62 ~~~~~~~d~vi~~a~~~----~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~S 111 (227)
T 3dhn_A 62 CEVCKGADAVISAFNPG----WNNPDIYDETIKVYLTIIDGVKKAG-V-NRFLMVG 111 (227)
T ss_dssp HHHHTTCSEEEECCCC----------CCSHHHHHHHHHHHHHHHTT-C-SEEEEEC
T ss_pred HHHhcCCCEEEEeCcCC----CCChhHHHHHHHHHHHHHHHHHHhC-C-CEEEEeC
Confidence 35688999999987643 1222356678888888888888852 3 3555555
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00011 Score=71.97 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCC--CCceEEEeccccchhh-----hHHHHHHHhhhhcC----CCcceEEEec
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQ-----ALEGVAMELEDSLF----PLLREVKIGI 164 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~--d~~i~L~l~~~d~~~~-----~l~g~a~DL~d~~~----~~~~~v~i~~ 164 (405)
+|||+|||+ |.+|..++..|+..+.... ..++.+ +|++.+ .++....+-....+ .+...+..++
T Consensus 8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~----~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
T 1x0v_A 8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTM----WVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVP 82 (354)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEE----ECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEES
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEE----EEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEc
Confidence 469999995 9999999999998762110 012444 344444 44332221100000 1112456666
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+..+++++||+||++... +.+.++.+.+..+.+++.+|+.++|-.
T Consensus 83 ~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi 127 (354)
T 1x0v_A 83 DVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGV 127 (354)
T ss_dssp SHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCB
T ss_pred CHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCcc
Confidence 666789999999987321 124455566666655688888888854
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00035 Score=67.85 Aligned_cols=120 Identities=12% Similarity=0.004 Sum_probs=70.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC---CcceEEEecCccccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---LLREVKIGINPYELF 170 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~---~~~~v~i~~~~~eal 170 (405)
..++||+|||| |.+|..++..|+..|. ++.+ . .+.+.++....+=.....+ +...+..++ +.+++
T Consensus 17 ~~~~kI~IiGa-Ga~G~~~a~~L~~~G~-----~V~l----~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~-~~~~~ 84 (318)
T 3hwr_A 17 FQGMKVAIMGA-GAVGCYYGGMLARAGH-----EVIL----I-ARPQHVQAIEATGLRLETQSFDEQVKVSASS-DPSAV 84 (318)
T ss_dssp ---CEEEEESC-SHHHHHHHHHHHHTTC-----EEEE----E-CCHHHHHHHHHHCEEEECSSCEEEECCEEES-CGGGG
T ss_pred ccCCcEEEECc-CHHHHHHHHHHHHCCC-----eEEE----E-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeC-CHHHc
Confidence 34689999995 9999999999998764 3555 2 2334444332210000001 111233444 44667
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCcee
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig 245 (405)
+++|+||++... .-+.++.+.+..+.+++..|+.++|..+... .+.+..+ .++++
T Consensus 85 ~~~D~vilavk~----------------~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~-~l~~~~~---~~vl~ 139 (318)
T 3hwr_A 85 QGADLVLFCVKS----------------TDTQSAALAMKPALAKSALVLSLQNGVENAD-TLRSLLE---QEVAA 139 (318)
T ss_dssp TTCSEEEECCCG----------------GGHHHHHHHHTTTSCTTCEEEEECSSSSHHH-HHHHHCC---SEEEE
T ss_pred CCCCEEEEEccc----------------ccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH-HHHHHcC---CcEEE
Confidence 999999997421 1235556667766667889999999987654 3334442 35554
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00045 Score=63.18 Aligned_cols=111 Identities=12% Similarity=0.025 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh-cCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-LFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~-~~~~~~~v~i~~~~~eal~dA 173 (405)
+.+||.|+||+|.+|++++..|+..|. .|.+ .+++.++++..... .. . ....++. ....+++.++
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-----~V~~----~~R~~~~~~~~~~~--~~~~-~~~~Dl~--~~~~~~~~~~ 85 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-----EPVA----MVRNEEQGPELRER--GASD-IVVANLE--EDFSHAFASI 85 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSGGGHHHHHHT--TCSE-EEECCTT--SCCGGGGTTC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-----eEEE----EECChHHHHHHHhC--CCce-EEEcccH--HHHHHHHcCC
Confidence 357999999999999999999999774 2443 35555555432211 11 0 0001111 3456789999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|+||.+++... ..+....+..|..-...+.+.+++. ..+.||+++-
T Consensus 86 D~vi~~ag~~~--~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS 131 (236)
T 3e8x_A 86 DAVVFAAGSGP--HTGADKTILIDLWGAIKTIQEAEKR--GIKRFIMVSS 131 (236)
T ss_dssp SEEEECCCCCT--TSCHHHHHHTTTHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred CEEEECCCCCC--CCCccccchhhHHHHHHHHHHHHHc--CCCEEEEEec
Confidence 99999887532 2234445677877788888888775 2346666664
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=73.26 Aligned_cols=127 Identities=11% Similarity=0.081 Sum_probs=78.2
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhccc-CCC--CCceEEEeccccchhhhHHHHHHHhhhhc------CCCcceEEE
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV-LGP--DQPIALKLLGSERSLQALEGVAMELEDSL------FPLLREVKI 162 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~-~~~--d~~i~L~l~~~d~~~~~l~g~a~DL~d~~------~~~~~~v~i 162 (405)
+..+|.||+|||| |.-|+++|..|+..+. ... +.++.|+-.+-+...+.+. ..+.-.+.. ..+..++..
T Consensus 30 ~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~-e~in~~~~N~~YLpgv~Lp~~i~~ 107 (391)
T 4fgw_A 30 AAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLT-EIINTRHQNVKYLPGITLPDNLVA 107 (391)
T ss_dssp ---CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHH-HHHTTTCCBTTTBTTCCCCSSEEE
T ss_pred ccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHH-HHHHhcCcCcccCCCCcCCCCcEE
Confidence 3456889999995 9999999999997652 000 0235565433333222222 111111211 123357889
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc-------hhHHHHHHHHH
Q 015501 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP-------CNTNALICLKN 235 (405)
Q Consensus 163 ~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP-------~d~~t~~~~k~ 235 (405)
+++..+++++||+||++ .| .+.++++.+.+..+-.++..+|.++-= ...+..++.+.
T Consensus 108 t~dl~~al~~ad~ii~a--vP--------------s~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~ 171 (391)
T 4fgw_A 108 NPDLIDSVKDVDIIVFN--IP--------------HQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEE 171 (391)
T ss_dssp ESCHHHHHTTCSEEEEC--SC--------------GGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHH
T ss_pred eCCHHHHHhcCCEEEEE--CC--------------hhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHH
Confidence 99989999999999987 33 356777888888776567777776532 23566666555
Q ss_pred C
Q 015501 236 A 236 (405)
Q Consensus 236 s 236 (405)
.
T Consensus 172 ~ 172 (391)
T 4fgw_A 172 L 172 (391)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00062 Score=64.35 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC-CCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-dAD 174 (405)
|+||+||| +|.+|..++..|...+. . .+|.+ +|++.++++. +.+. ... ...+.+..++++ +||
T Consensus 1 m~~I~iIG-~G~mG~~~a~~l~~~g~-~--~~V~~----~d~~~~~~~~-~~~~-----g~~--~~~~~~~~~~~~~~aD 64 (281)
T 2g5c_A 1 MQNVLIVG-VGFMGGSFAKSLRRSGF-K--GKIYG----YDINPESISK-AVDL-----GII--DEGTTSIAKVEDFSPD 64 (281)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTC-C--SEEEE----ECSCHHHHHH-HHHT-----TSC--SEEESCGGGGGGTCCS
T ss_pred CcEEEEEe-cCHHHHHHHHHHHhcCC-C--cEEEE----EeCCHHHHHH-HHHC-----CCc--ccccCCHHHHhcCCCC
Confidence 57999999 59999999999998764 1 12443 4666565542 2211 111 123345567888 999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+||++... +...++.+.+..+.+++++|++++|-
T Consensus 65 vVilavp~----------------~~~~~v~~~l~~~l~~~~iv~~~~~~ 98 (281)
T 2g5c_A 65 FVMLSSPV----------------RTFREIAKKLSYILSEDATVTDQGSV 98 (281)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred EEEEcCCH----------------HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 99997431 12334444455444467788877763
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00045 Score=65.68 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+++||+||| +|.+|..++..|...+. + ..+.+ .|++.++++... + . ... ...+.+..+++++||
T Consensus 5 ~~~~I~iIG-~G~mG~~~a~~l~~~g~-~--~~V~~----~d~~~~~~~~~~-~---~--g~~--~~~~~~~~~~~~~aD 68 (290)
T 3b1f_A 5 EEKTIYIAG-LGLIGASLALGIKRDHP-H--YKIVG----YNRSDRSRDIAL-E---R--GIV--DEATADFKVFAALAD 68 (290)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHCT-T--SEEEE----ECSSHHHHHHHH-H---T--TSC--SEEESCTTTTGGGCS
T ss_pred ccceEEEEe-eCHHHHHHHHHHHhCCC-C--cEEEE----EcCCHHHHHHHH-H---c--CCc--ccccCCHHHhhcCCC
Confidence 367999999 59999999999987642 1 13443 466656554321 1 1 110 023445567889999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh-cCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~-a~p~a~vIvvtNP 224 (405)
+||++... +.+.++.+.+..+ .+++.+|+.++|-
T Consensus 69 vVilavp~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~ 103 (290)
T 3b1f_A 69 VIILAVPI----------------KKTIDFIKILADLDLKEDVIITDAGST 103 (290)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred EEEEcCCH----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence 99997431 2335666666665 4567788777774
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00056 Score=64.61 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|||+ |.+|..++..|.. +. ++.+ +|++.++++..... .. .... ..++++++|+
T Consensus 1 M~~i~iiG~-G~~G~~~a~~l~~-g~-----~V~~----~~~~~~~~~~~~~~---g~-------~~~~-~~~~~~~~D~ 58 (289)
T 2cvz_A 1 MEKVAFIGL-GAMGYPMAGHLAR-RF-----PTLV----WNRTFEKALRHQEE---FG-------SEAV-PLERVAEARV 58 (289)
T ss_dssp -CCEEEECC-STTHHHHHHHHHT-TS-----CEEE----ECSSTHHHHHHHHH---HC-------CEEC-CGGGGGGCSE
T ss_pred CCeEEEEcc-cHHHHHHHHHHhC-CC-----eEEE----EeCCHHHHHHHHHC---CC-------cccC-HHHHHhCCCE
Confidence 579999995 9999999999988 64 3554 46665655533221 11 1223 5677889999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
||++...+ ..+.++.+.+.....++..|+..+|..
T Consensus 59 vi~~v~~~---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~ 93 (289)
T 2cvz_A 59 IFTCLPTT---------------REVYEVAEALYPYLREGTYWVDATSGE 93 (289)
T ss_dssp EEECCSSH---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred EEEeCCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 99874321 123344455555444677888778754
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00038 Score=67.59 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+++||+||| +|.+|..++..|+..|. +|.+ .|+++++++.... . .+....+..+++++||
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G~-----~V~~----~dr~~~~~~~l~~----~------g~~~~~~~~e~~~~aD 89 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAGY-----ALQV----WNRTPARAASLAA----L------GATIHEQARAAARDAD 89 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHT----T------TCEEESSHHHHHTTCS
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCCC-----eEEE----EcCCHHHHHHHHH----C------CCEeeCCHHHHHhcCC
Confidence 468999999 59999999999998764 3544 4666666553321 1 1345567778899999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||++.
T Consensus 90 vVi~~v 95 (320)
T 4dll_A 90 IVVSML 95 (320)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999874
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00017 Score=64.84 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||.|+||+|++|++++..|+..|. .|.+ .+++.+++... .... .. ....++....+++.++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~R~~~~~~~~----~~~~-~~-~~~D~~d~~~~~~~~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH-----EVTA----IVRNAGKITQT----HKDI-NI-LQKDIFDLTLSDLSDQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCSHHHHHH----CSSS-EE-EECCGGGCCHHHHTTCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-----EEEE----EEcCchhhhhc----cCCC-eE-EeccccChhhhhhcCCCEE
Confidence 6899999999999999999998874 2443 34554444321 1100 00 0001111111688999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|.+++.+.. ....|....+.+.+.+++. ....+|+++-
T Consensus 66 i~~ag~~~~-------~~~~~~~~~~~l~~a~~~~--~~~~~v~~SS 103 (221)
T 3ew7_A 66 VDAYGISPD-------EAEKHVTSLDHLISVLNGT--VSPRLLVVGG 103 (221)
T ss_dssp EECCCSSTT-------TTTSHHHHHHHHHHHHCSC--CSSEEEEECC
T ss_pred EECCcCCcc-------ccchHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 998876431 1234777788888888774 2456666654
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00036 Score=67.45 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.+||+|||+ |.+|+.+|..|+ .|+ ++.+ .|+++++++.....+.+ .....++.+++. +++++||
T Consensus 11 ~~~~V~vIG~-G~MG~~iA~~la-aG~-----~V~v----~d~~~~~~~~~~~~l~~---~~~~~i~~~~~~-~~~~~aD 75 (293)
T 1zej_A 11 HHMKVFVIGA-GLMGRGIAIAIA-SKH-----EVVL----QDVSEKALEAAREQIPE---ELLSKIEFTTTL-EKVKDCD 75 (293)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHH-TTS-----EEEE----ECSCHHHHHHHHHHSCG---GGGGGEEEESSC-TTGGGCS
T ss_pred CCCeEEEEee-CHHHHHHHHHHH-cCC-----EEEE----EECCHHHHHHHHHHHHH---HHhCCeEEeCCH-HHHcCCC
Confidence 4689999995 999999999999 775 3555 56666766643332211 112346666554 4599999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vI 219 (405)
+||.+.. . +..+-+.+...+... |++++.
T Consensus 76 lVieavp--e------------~~~vk~~l~~~l~~~--~~~Ila 104 (293)
T 1zej_A 76 IVMEAVF--E------------DLNTKVEVLREVERL--TNAPLC 104 (293)
T ss_dssp EEEECCC--S------------CHHHHHHHHHHHHTT--CCSCEE
T ss_pred EEEEcCc--C------------CHHHHHHHHHHHhcC--CCCEEE
Confidence 9998732 1 234444444456665 777764
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00013 Score=70.50 Aligned_cols=67 Identities=12% Similarity=0.313 Sum_probs=48.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.+|+||+||| +|.+|..++..|+..|. ++.+ .|++.++++.... . .+....+..+++++|
T Consensus 19 ~~m~~I~iIG-~G~mG~~~A~~l~~~G~-----~V~~----~dr~~~~~~~l~~----~------g~~~~~~~~~~~~~a 78 (310)
T 3doj_A 19 SHMMEVGFLG-LGIMGKAMSMNLLKNGF-----KVTV----WNRTLSKCDELVE----H------GASVCESPAEVIKKC 78 (310)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSSGGGGHHHHH----T------TCEECSSHHHHHHHC
T ss_pred ccCCEEEEEC-ccHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHH----C------CCeEcCCHHHHHHhC
Confidence 4578999999 59999999999998774 3544 4666666654331 1 123456677889999
Q ss_pred cEEEEeC
Q 015501 174 EWALLIG 180 (405)
Q Consensus 174 DiVIi~~ 180 (405)
|+||++.
T Consensus 79 Dvvi~~v 85 (310)
T 3doj_A 79 KYTIAML 85 (310)
T ss_dssp SEEEECC
T ss_pred CEEEEEc
Confidence 9999874
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00036 Score=67.86 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc-ccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE-LFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e-al~dAD 174 (405)
++||+||| +|.+|..++..|...|.. .+|.+ +|++.+.++. +.++ ... .....+..+ ++++||
T Consensus 33 ~~kI~IIG-~G~mG~slA~~l~~~G~~---~~V~~----~dr~~~~~~~-a~~~-----G~~--~~~~~~~~~~~~~~aD 96 (314)
T 3ggo_A 33 MQNVLIVG-VGFMGGSFAKSLRRSGFK---GKIYG----YDINPESISK-AVDL-----GII--DEGTTSIAKVEDFSPD 96 (314)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHTTCC---SEEEE----ECSCHHHHHH-HHHT-----TSC--SEEESCTTGGGGGCCS
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCCC---CEEEE----EECCHHHHHH-HHHC-----CCc--chhcCCHHHHhhccCC
Confidence 47999999 599999999999998762 13444 5666665542 2221 110 023455566 799999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||++... ..+.++.+.+..+..++++|+.++.
T Consensus 97 vVilavp~----------------~~~~~vl~~l~~~l~~~~iv~d~~S 129 (314)
T 3ggo_A 97 FVMLSSPV----------------RTFREIAKKLSYILSEDATVTDQGS 129 (314)
T ss_dssp EEEECSCG----------------GGHHHHHHHHHHHSCTTCEEEECCS
T ss_pred EEEEeCCH----------------HHHHHHHHHHhhccCCCcEEEECCC
Confidence 99987321 1123334445555457778777664
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00031 Score=66.91 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+||| +|.+|..++..|+..|. ++.+ .|++.++++..... .+....+..+++++||+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~-----~V~~----~dr~~~~~~~~~~~----------g~~~~~~~~~~~~~adv 60 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGF-----DVTV----WNRNPAKCAPLVAL----------GARQASSPAEVCAACDI 60 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTC-----CEEE----ECSSGGGGHHHHHH----------TCEECSCHHHHHHHCSE
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHHHC----------CCeecCCHHHHHHcCCE
Confidence 57999999 59999999999998774 3554 46666666543321 12345567788899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
||++.
T Consensus 61 vi~~v 65 (287)
T 3pdu_A 61 TIAML 65 (287)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 99874
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00065 Score=64.07 Aligned_cols=92 Identities=22% Similarity=0.143 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|..++..|...+. ++.+ +|++.++++... +. ... .....+..+. +++|+|
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g~-----~V~~----~~~~~~~~~~~~-~~-----g~~--~~~~~~~~~~-~~~D~v 61 (279)
T 2f1k_A 1 MKIGVVG-LGLIGASLAGDLRRRGH-----YLIG----VSRQQSTCEKAV-ER-----QLV--DEAGQDLSLL-QTAKII 61 (279)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHH-HT-----TSC--SEEESCGGGG-TTCSEE
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHH-hC-----CCC--ccccCCHHHh-CCCCEE
Confidence 5899999 59999999999998764 2444 466666655322 11 111 1234455566 999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. .+.+.++.+.+..+..++.+|+.++|
T Consensus 62 i~av~----------------~~~~~~~~~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 62 FLCTP----------------IQLILPTLEKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp EECSC----------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred EEECC----------------HHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 99743 13455566666665556778887755
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00023 Score=67.80 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=60.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|..++..|+..|. ++.+ .|+++++++.... . .+....+..+++++||+|
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~-----~V~~----~dr~~~~~~~~~~----~------g~~~~~~~~~~~~~aDvv 61 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGC-----SVTI----WNRSPEKAEELAA----L------GAERAATPCEVVESCPVT 61 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSSGGGGHHHHH----T------TCEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHHH----C------CCeecCCHHHHHhcCCEE
Confidence 6999999 59999999999998774 3544 4666666654332 1 234456677888999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHH---HHHHhhcCCCeEEEEeCC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQG---KALNAVASRNVKVIVVGN 223 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~---~~i~~~a~p~a~vIvvtN 223 (405)
|++... .+.++++. +.+.....++.+||..++
T Consensus 62 i~~vp~---------------~~~~~~v~~~~~~l~~~l~~~~~vi~~st 96 (287)
T 3pef_A 62 FAMLAD---------------PAAAEEVCFGKHGVLEGIGEGRGYVDMST 96 (287)
T ss_dssp EECCSS---------------HHHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred EEEcCC---------------HHHHHHHHcCcchHhhcCCCCCEEEeCCC
Confidence 987431 12233444 444444446667777765
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00034 Score=67.11 Aligned_cols=93 Identities=9% Similarity=0.094 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.++||+||| .|.+|..++..|+..|. ++.+ .|+++++++.... . .+....+..++++ ||
T Consensus 14 ~~~~I~vIG-~G~mG~~~A~~l~~~G~-----~V~~----~dr~~~~~~~~~~----~------g~~~~~~~~~~~~-aD 72 (296)
T 3qha_A 14 EQLKLGYIG-LGNMGAPMATRMTEWPG-----GVTV----YDIRIEAMTPLAE----A------GATLADSVADVAA-AD 72 (296)
T ss_dssp -CCCEEEEC-CSTTHHHHHHHHTTSTT-----CEEE----ECSSTTTSHHHHH----T------TCEECSSHHHHTT-SS
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHH----C------CCEEcCCHHHHHh-CC
Confidence 357999999 59999999999998764 3554 4666666553331 1 1334556667777 99
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||++... -+.++++.+.+.....++.+||..++
T Consensus 73 vvi~~vp~---------------~~~~~~v~~~l~~~l~~g~ivv~~st 106 (296)
T 3qha_A 73 LIHITVLD---------------DAQVREVVGELAGHAKPGTVIAIHST 106 (296)
T ss_dssp EEEECCSS---------------HHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred EEEEECCC---------------hHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 99987431 12344444556555446667777665
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00026 Score=67.50 Aligned_cols=97 Identities=9% Similarity=0.093 Sum_probs=59.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.+++||+||| +|.+|..++..|...+. ++.+ +|++.++++... +. .+.+..+..++++++
T Consensus 2 ~~~~~i~iiG-~G~~G~~~a~~l~~~g~-----~V~~----~~~~~~~~~~~~----~~------g~~~~~~~~~~~~~~ 61 (301)
T 3cky_A 2 EKSIKIGFIG-LGAMGKPMAINLLKEGV-----TVYA----FDLMEANVAAVV----AQ------GAQACENNQKVAAAS 61 (301)
T ss_dssp --CCEEEEEC-CCTTHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHH----TT------TCEECSSHHHHHHHC
T ss_pred CCCCEEEEEC-ccHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHH----HC------CCeecCCHHHHHhCC
Confidence 3568999999 59999999999998664 3544 466656554332 11 123445566778899
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHH---HHHhhcCCCeEEEEeCCch
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGK---ALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~---~i~~~a~p~a~vIvvtNP~ 225 (405)
|+||++...+ ..++++.. .+.....++.+|+..+|-.
T Consensus 62 D~vi~~vp~~---------------~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 62 DIIFTSLPNA---------------GIVETVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp SEEEECCSSH---------------HHHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred CEEEEECCCH---------------HHHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 9999974321 12223332 3333334667777777654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0002 Score=64.60 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=63.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE---EecCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK---IGINPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~---i~~~~~eal~dA 173 (405)
|||.|+||+|++|++++..|+..|. .+.+ .+++.+++.. +.... ..+. ++....+++.++
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~-----~V~~----~~R~~~~~~~----~~~~~----~~~~~~D~~d~~~~~~~~~ 63 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH-----EVLA----VVRDPQKAAD----RLGAT----VATLVKEPLVLTEADLDSV 63 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHH----HTCTT----SEEEECCGGGCCHHHHTTC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC-----EEEE----EEeccccccc----ccCCC----ceEEecccccccHhhcccC
Confidence 5899999999999999999999764 2443 3455444432 11100 0111 111111678999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|+||.+++....+. ....|....+.+.+.+++. . ..+|+++
T Consensus 64 d~vi~~ag~~~~~~-----~~~~n~~~~~~l~~a~~~~--~-~~~v~~S 104 (224)
T 3h2s_A 64 DAVVDALSVPWGSG-----RGYLHLDFATHLVSLLRNS--D-TLAVFIL 104 (224)
T ss_dssp SEEEECCCCCTTSS-----CTHHHHHHHHHHHHTCTTC--C-CEEEEEC
T ss_pred CEEEECCccCCCcc-----hhhHHHHHHHHHHHHHHHc--C-CcEEEEe
Confidence 99999887642121 1345777888888887774 2 6677765
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00057 Score=65.68 Aligned_cols=67 Identities=7% Similarity=-0.016 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+++||+||| +|.+|..++..|+..|. ++.+ +|++.++++.... .. . .....+..+++++||
T Consensus 6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~-----~V~~----~dr~~~~~~~~~~----~g--~---~~~~~~~~e~~~~aD 66 (303)
T 3g0o_A 6 TDFHVGIVG-LGSMGMGAARSCLRAGL-----STWG----ADLNPQACANLLA----EG--A---CGAAASAREFAGVVD 66 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHH----TT--C---SEEESSSTTTTTTCS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----eEEE----EECCHHHHHHHHH----cC--C---ccccCCHHHHHhcCC
Confidence 357999999 59999999999998774 3544 4666666554332 11 1 112466778899999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||++.
T Consensus 67 vvi~~v 72 (303)
T 3g0o_A 67 ALVILV 72 (303)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999874
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00059 Score=64.90 Aligned_cols=94 Identities=12% Similarity=0.191 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|||++|.+|..++..|...+. +|.+ +|++.++++... +. . +.. .+..+++++||+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~-~~-----g----~~~-~~~~~~~~~aDv 70 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH-----HLAA----IEIAPEGRDRLQ-GM-----G----IPL-TDGDGWIDEADV 70 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS-----EEEE----ECCSHHHHHHHH-HT-----T----CCC-CCSSGGGGTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHH-hc-----C----CCc-CCHHHHhcCCCE
Confidence 47999999449999999999998764 3544 466656554332 11 1 111 256688899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
||++... ..+.++.+.+..+..++.+|+..++..
T Consensus 71 Vi~av~~----------------~~~~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 71 VVLALPD----------------NIIEKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp EEECSCH----------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred EEEcCCc----------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence 9987431 224566666766655677887777754
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00044 Score=67.37 Aligned_cols=102 Identities=14% Similarity=-0.000 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh-hhc-CCCc--ceE-EEecCccccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-DSL-FPLL--REV-KIGINPYELF 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~-d~~-~~~~--~~v-~i~~~~~eal 170 (405)
+|||+|||+ |.+|..++..|...+. ++.+ +|++.++++....... ... .... ..+ ..+.+..+++
T Consensus 4 ~mki~iiG~-G~~G~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (359)
T 1bg6_A 4 SKTYAVLGL-GNGGHAFAAYLALKGQ-----SVLA----WDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV 73 (359)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH
Confidence 579999995 9999999999998763 3554 4666566554432210 000 0000 111 2344555678
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+++|+||++.... ...++.+.+..+..++..|+...|
T Consensus 74 ~~~D~vi~~v~~~----------------~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 74 KDADVILIVVPAI----------------HHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp TTCSEEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEESSC
T ss_pred hcCCEEEEeCCch----------------HHHHHHHHHHHhCCCCCEEEEcCC
Confidence 9999999974321 113445566665556666666644
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00075 Score=61.49 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.++||+||| +|.+|+.++..|...+. ++.+ +|++++ ++++||
T Consensus 18 ~~~~I~iiG-~G~mG~~la~~l~~~g~-----~V~~----~~~~~~----------------------------~~~~aD 59 (209)
T 2raf_A 18 QGMEITIFG-KGNMGQAIGHNFEIAGH-----EVTY----YGSKDQ----------------------------ATTLGE 59 (209)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECTTCC----------------------------CSSCCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EcCCHH----------------------------HhccCC
Confidence 367999999 59999999999998763 3444 344322 668999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
+||++.. .+.++++.+.+..+.. +.+++.++|+.+
T Consensus 60 ~vi~av~----------------~~~~~~v~~~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 60 IVIMAVP----------------YPALAALAKQYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp EEEECSC----------------HHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred EEEEcCC----------------cHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence 9998743 1223444445554443 778999999665
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00051 Score=70.14 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC----------CcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~----------~~~~v~i~~~ 165 (405)
..+|+||| +|.||..+|..|+..|. ++.+ .|+++++++...........+ ...+++.+++
T Consensus 8 ~~~~~vIG-lG~vG~~~A~~La~~G~-----~V~~----~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd 77 (446)
T 4a7p_A 8 SVRIAMIG-TGYVGLVSGACFSDFGH-----EVVC----VDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTD 77 (446)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESC
T ss_pred ceEEEEEc-CCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECC
Confidence 57999999 59999999999999774 3544 455656655332210000000 0135778887
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..+++++||+||++.+.|...+.... +...+++.++.+.++..++.+||.-|
T Consensus 78 ~~ea~~~aDvvii~Vptp~~~~~~~~-----Dl~~v~~v~~~i~~~l~~g~iVV~~S 129 (446)
T 4a7p_A 78 LAEGVKDADAVFIAVGTPSRRGDGHA-----DLSYVFAAAREIAENLTKPSVIVTKS 129 (446)
T ss_dssp HHHHHTTCSEEEECCCCCBCTTTCCB-----CTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred HHHHHhcCCEEEEEcCCCCccccCCc-----cHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 77899999999998665543211112 23445555566666654555665554
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00073 Score=64.67 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--c------Cc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I------NP 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~------~~ 166 (405)
+.++|.|+||+|+||++++..|+..|. .|.+ .+++.+.++.....+.+.. + .++.+. . ..
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~ 77 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGY-----KVRG----TARSASKLANLQKRWDAKY-P--GRFETAVVEDMLKQGAY 77 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHS-T--TTEEEEECSCTTSTTTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EeCCcccHHHHHHHhhccC-C--CceEEEEecCCcChHHH
Confidence 457999999999999999999998764 2433 3444444332222221111 1 112211 1 12
Q ss_pred ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.++++++|+||.+++... .+.+....+..|+.-...+.+.+.+.. ....+|.++-.
T Consensus 78 ~~~~~~~d~vih~A~~~~-~~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~iv~~SS~ 133 (342)
T 1y1p_A 78 DEVIKGAAGVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP-SVKRFVLTSST 133 (342)
T ss_dssp TTTTTTCSEEEECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT-TCCEEEEECCG
T ss_pred HHHHcCCCEEEEeCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhCC-CCcEEEEeccH
Confidence 355678999999877542 223444567788888888888877532 23567766643
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00025 Score=68.24 Aligned_cols=109 Identities=14% Similarity=0.061 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC------cc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~------~~ 167 (405)
.+|||.|+||+|++|++++..|+..|. +|.+ .+++...++ ++.+. ++.+ ..| ..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~----~l~~~------~~~~~~~Dl~d~~~~~ 72 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGH-----DLVL----IHRPSSQIQ----RLAYL------EPECRVAEMLDHAGLE 72 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EECTTSCGG----GGGGG------CCEEEECCTTCHHHHH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EecChHhhh----hhccC------CeEEEEecCCCHHHHH
Confidence 456999999999999999999998763 2433 233333221 12110 1111 111 23
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
++++++|+||.+++.......+..+.+..|......+.+.+.+.. -..+|.++-.
T Consensus 73 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~~v~~SS~ 127 (342)
T 2x4g_A 73 RALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR--VPRILYVGSA 127 (342)
T ss_dssp HHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHT--CSCEEEECCG
T ss_pred HHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEECCH
Confidence 567899999998775321122344567888888888888888752 2456666543
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.001 Score=62.03 Aligned_cols=65 Identities=22% Similarity=0.186 Sum_probs=44.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||+ |.+|..++..|...+. . ++.+ +|++.++++.....+ .+.+..+..+++ ++|+|
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~--~--~v~~----~~r~~~~~~~~~~~~---------g~~~~~~~~~~~-~~D~v 61 (263)
T 1yqg_A 1 MNVYFLGG-GNMAAAVAGGLVKQGG--Y--RIYI----ANRGAEKRERLEKEL---------GVETSATLPELH-SDDVL 61 (263)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCS--C--EEEE----ECSSHHHHHHHHHHT---------CCEEESSCCCCC-TTSEE
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCC--C--eEEE----ECCCHHHHHHHHHhc---------CCEEeCCHHHHh-cCCEE
Confidence 58999995 9999999999998763 1 3544 566666665443221 123445566778 99999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 62 i~~v 65 (263)
T 1yqg_A 62 ILAV 65 (263)
T ss_dssp EECS
T ss_pred EEEe
Confidence 9874
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=9.2e-05 Score=71.63 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=64.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhh--HHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~--l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
.+++||.|+||+|+||++++..|+..|. .|.. .+++... ++-+..|+.+. ....++++
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~Dl~d~-----------~~~~~~~~ 76 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGR-----TVRG----FDLRPSGTGGEEVVGSLEDG-----------QALSDAIM 76 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC-----CEEE----EESSCCSSCCSEEESCTTCH-----------HHHHHHHT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-----EEEE----EeCCCCCCCccEEecCcCCH-----------HHHHHHHh
Confidence 3568999999999999999999998874 2433 2333221 00001111110 11235678
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||.+++............+..|+.-...+.+.+.+. +. ..||.++-
T Consensus 77 ~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~-~~~V~~SS 126 (347)
T 4id9_A 77 GVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAA-GV-RRFVFASS 126 (347)
T ss_dssp TCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHT-TC-SEEEEEEE
T ss_pred CCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHc-CC-CeEEEECC
Confidence 9999999887543222233566788888888888888875 23 35555543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00023 Score=73.63 Aligned_cols=104 Identities=11% Similarity=0.097 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
||||.|+||+|+||++++..|+..|. .|.. ++++....+.+..|+ .....+++.++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~-----~V~~----l~R~~~~~~~v~~d~-------------~~~~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH-----EVIQ----LVRKEPKPGKRFWDP-------------LNPASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESSSCCTTCEECCT-------------TSCCTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCCCCccceeecc-------------cchhHHhcCCCCE
Confidence 88999999999999999999998764 2433 233333221111111 1224578889999
Q ss_pred EEEeCCcCCCC---CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~---g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||.+++..... ......+...|+.-...+++.+.+.. .-..+|.+|
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~-~~~r~V~~S 253 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAEST-QCTTMISAS 253 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCS-SCCEEEEEE
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEeC
Confidence 99987753211 12234566778888888888755533 223555555
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00045 Score=66.73 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc--hhhhHHHHHHHhhhhcC--CCcceEEEec--Cccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLF--PLLREVKIGI--NPYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~--~~~~l~g~a~DL~d~~~--~~~~~v~i~~--~~~eal 170 (405)
|||+|||+ |.+|+.++..|...+. ++.+ +|+ +.++++....+-....+ .+ ..+..+. +..+++
T Consensus 1 m~I~iiG~-G~mG~~~a~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 69 (335)
T 1txg_A 1 MIVSILGA-GAMGSALSVPLVDNGN-----EVRI----WGTEFDTEILKSISAGREHPRLGVKL-NGVEIFWPEQLEKCL 69 (335)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-----EEEE----ECCGGGHHHHHHHHTTCCBTTTTBCC-CSEEEECGGGHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EEccCCHHHHHHHHHhCcCcccCccc-cceEEecHHhHHHHH
Confidence 58999995 9999999999998763 3544 455 55555433221000000 01 2345554 445678
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+++|+||++...+ .+.++.+.+.. .+++.+||.++|-.
T Consensus 70 ~~~D~vi~~v~~~----------------~~~~v~~~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 70 ENAEVVLLGVSTD----------------GVLPVMSRILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp TTCSEEEECSCGG----------------GHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred hcCCEEEEcCChH----------------HHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence 9999999874321 12333344444 34677888888766
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00052 Score=66.43 Aligned_cols=84 Identities=10% Similarity=-0.064 Sum_probs=44.2
Q ss_pred cceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch--hhhHHHHHHHhhh
Q 015501 74 CYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELED 151 (405)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~--~~~l~g~a~DL~d 151 (405)
+.+.|+-.++++.- +..+++||+||| +|.+|..++..|+..|. .++.+ .|++ .++.+.. .+
T Consensus 6 ~~~~~~~~~~~~~~----~~~~~~~I~iIG-~G~mG~~~A~~L~~~G~----~~V~~----~dr~~~~~~~~~~----~~ 68 (312)
T 3qsg_A 6 HHSSGVDLGTENLY----FQSNAMKLGFIG-FGEAASAIASGLRQAGA----IDMAA----YDAASAESWRPRA----EE 68 (312)
T ss_dssp -----------------------CEEEEEC-CSHHHHHHHHHHHHHSC----CEEEE----ECSSCHHHHHHHH----HH
T ss_pred ccccccccCccccc----ccCCCCEEEEEC-ccHHHHHHHHHHHHCCC----CeEEE----EcCCCCHHHHHHH----HH
Confidence 34556655555431 234578999999 59999999999998774 13544 4553 3333321 11
Q ss_pred hcCCCcceEEEecCcccccCCCcEEEEeC
Q 015501 152 SLFPLLREVKIGINPYELFEDAEWALLIG 180 (405)
Q Consensus 152 ~~~~~~~~v~i~~~~~eal~dADiVIi~~ 180 (405)
. .+....+..+++++||+||++.
T Consensus 69 ~------g~~~~~~~~e~~~~aDvVi~~v 91 (312)
T 3qsg_A 69 L------GVSCKASVAEVAGECDVIFSLV 91 (312)
T ss_dssp T------TCEECSCHHHHHHHCSEEEECS
T ss_pred C------CCEEeCCHHHHHhcCCEEEEec
Confidence 1 1234456678899999999874
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00015 Score=67.76 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
+|||+|||+ |.+|+.++..|...+.... .++.+ +|++.++ . .+.+..+..+++++||+
T Consensus 4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~-~~v~~----~~~~~~~------------~----g~~~~~~~~~~~~~~D~ 61 (262)
T 2rcy_A 4 NIKLGFMGL-GQMGSALAHGIANANIIKK-ENLFY----YGPSKKN------------T----TLNYMSSNEELARHCDI 61 (262)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHHTSSCG-GGEEE----ECSSCCS------------S----SSEECSCHHHHHHHCSE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCCCC-CeEEE----EeCCccc------------C----ceEEeCCHHHHHhcCCE
Confidence 579999995 9999999999998774211 13554 3554443 0 12344456678889999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
||++.. + ..+.++.+.+..+. ++..|+..+|..+.
T Consensus 62 vi~~v~-~---------------~~~~~v~~~l~~~l-~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 62 IVCAVK-P---------------DIAGSVLNNIKPYL-SSKLLISICGGLNI 96 (262)
T ss_dssp EEECSC-T---------------TTHHHHHHHSGGGC-TTCEEEECCSSCCH
T ss_pred EEEEeC-H---------------HHHHHHHHHHHHhc-CCCEEEEECCCCCH
Confidence 998743 1 11344455566665 67788888888765
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00066 Score=69.21 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=71.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH--------hhhhcCC--CcceEEEe
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP--LLREVKIG 163 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D--------L~d~~~~--~~~~v~i~ 163 (405)
.+|.+|+||| .|.||..+|..|+..|. ++. - +|.++++.+.+-.. |++.... ...+.+++
T Consensus 19 ~~m~~IaViG-lGYVGLp~A~~~A~~G~-----~V~--g--~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~t 88 (444)
T 3vtf_A 19 SHMASLSVLG-LGYVGVVHAVGFALLGH-----RVV--G--YDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFA 88 (444)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHHTC-----EEE--E--ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEC
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHhCCC-----cEE--E--EECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEE
Confidence 4688999999 69999999999998764 232 2 45665665433210 1110000 01357788
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE-eCCchh
Q 015501 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCN 226 (405)
Q Consensus 164 ~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIv-vtNP~d 226 (405)
++..+++++||++|++.+.|..+.. ..|+ ..-....+.+++.++... +..+||+ -|=|..
T Consensus 89 t~~~~ai~~ad~~~I~VpTP~~~d~-~~Dl-~~v~~a~~~I~~~l~~~~-~g~lVV~eSTVppG 149 (444)
T 3vtf_A 89 ESAEEAVAATDATFIAVGTPPAPDG-SADL-RYVEAAARAVGRGIRAKG-RWHLVVVKSTVPPG 149 (444)
T ss_dssp SSHHHHHHTSSEEEECCCCCBCTTS-SBCC-HHHHHHHHHHHHHHHHHC-SCCEEEECSCCCTT
T ss_pred cCHHHHHhcCCceEEEecCCCCCCC-CCCc-HHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCCc
Confidence 8888999999999998776644322 1222 111245566777776542 3334443 334553
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00013 Score=68.78 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=61.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-CCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~~~~~~v~i~~~~~eal~dADi 175 (405)
|||+|||+ |.+|+.++..|...|. ++.+ +|++.++++. +.... ........+..++.++++++|+
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~----~~r~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 66 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGH-----EVQG----WLRVPQPYCS----VNLVETDGSIFNESLTANDPDFLATSDL 66 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSCCSEEE----EEEECTTSCEEEEEEEESCHHHHHTCSE
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCC-----CEEE----EEcCccceee----EEEEcCCCceeeeeeeecCccccCCCCE
Confidence 58999995 9999999999998764 3554 3444443321 21110 0000012223345678899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
||++.... .+.++.+.+..+.+++.+|+.++|..+.
T Consensus 67 vi~~v~~~----------------~~~~v~~~l~~~l~~~~~vv~~~~g~~~ 102 (291)
T 1ks9_A 67 LLVTLKAW----------------QVSDAVKSLASTLPVTTPILLIHNGMGT 102 (291)
T ss_dssp EEECSCGG----------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred EEEEecHH----------------hHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence 99974321 1244455566655567888888997744
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.001 Score=64.62 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh---hhHHHHHHHhhhhcCCCcceEEEec-CcccccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKIGI-NPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~---~~l~g~a~DL~d~~~~~~~~v~i~~-~~~eal~ 171 (405)
++||+||| +|.+|..++..|+..|.. ++.+ .|++. ++.+.....+.... + .. +..++++
T Consensus 24 ~m~IgvIG-~G~mG~~lA~~L~~~G~~----~V~~----~dr~~~~~~~~~~~~~~~~~~g------~--~~~s~~e~~~ 86 (317)
T 4ezb_A 24 MTTIAFIG-FGEAAQSIAGGLGGRNAA----RLAA----YDLRFNDPAASGALRARAAELG------V--EPLDDVAGIA 86 (317)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCS----EEEE----ECGGGGCTTTHHHHHHHHHHTT------C--EEESSGGGGG
T ss_pred CCeEEEEC-ccHHHHHHHHHHHHcCCC----eEEE----EeCCCccccchHHHHHHHHHCC------C--CCCCHHHHHh
Confidence 47999999 599999999999987721 3444 45554 23333333332211 1 34 6778999
Q ss_pred CCcEEEEeC
Q 015501 172 DAEWALLIG 180 (405)
Q Consensus 172 dADiVIi~~ 180 (405)
+||+||++.
T Consensus 87 ~aDvVi~av 95 (317)
T 4ezb_A 87 CADVVLSLV 95 (317)
T ss_dssp GCSEEEECC
T ss_pred cCCEEEEec
Confidence 999999874
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00051 Score=66.93 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-CcceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-~~~~v~i~~~~~eal~dAD 174 (405)
++||+|||+ |.+|+.++..|+..|. ++.+ .+++.++++....+-.....+ ....+..+.+..+ ++++|
T Consensus 14 ~~kI~iIG~-G~mG~ala~~L~~~G~-----~V~~----~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aD 82 (335)
T 1z82_A 14 EMRFFVLGA-GSWGTVFAQMLHENGE-----EVIL----WARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKED 82 (335)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTE
T ss_pred CCcEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCC
Confidence 589999995 9999999999998764 3554 466656665443321000000 0002455555556 89999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||++.
T Consensus 83 vVil~v 88 (335)
T 1z82_A 83 ILVIAI 88 (335)
T ss_dssp EEEECS
T ss_pred EEEEEC
Confidence 999873
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0002 Score=64.88 Aligned_cols=94 Identities=26% Similarity=0.239 Sum_probs=57.2
Q ss_pred CCE-EEEEcCCCchHHHHHHHHH-hcccCCCCCceEEEeccccchhh-hHHHHHHHhhhhcCCCcceEEEe-cC------
Q 015501 96 MVN-IAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKIG-IN------ 165 (405)
Q Consensus 96 ~~K-I~IIGAaG~VGs~la~~L~-~~~~~~~d~~i~L~l~~~d~~~~-~l~g~a~DL~d~~~~~~~~v~i~-~~------ 165 (405)
||| |.|+||+|.+|.+++..|+ ..|. .|.+ .+++.+ +++..+. .. . ++.+. .|
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~-----~V~~----~~r~~~~~~~~~~~----~~-~---~~~~~~~D~~d~~~ 66 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDM-----HITL----YGRQLKTRIPPEII----DH-E---RVTVIEGSFQNPGX 66 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCC-----EEEE----EESSHHHHSCHHHH----TS-T---TEEEEECCTTCHHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCc-----eEEE----EecCccccchhhcc----CC-C---ceEEEECCCCCHHH
Confidence 445 9999999999999999999 6664 2443 345544 4432220 00 1 11111 11
Q ss_pred cccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..++++++|+||.+++.. |.. .+.+.+.+++. ..+.||+++
T Consensus 67 ~~~~~~~~d~vv~~ag~~-------------n~~-~~~~~~~~~~~--~~~~iv~iS 107 (221)
T 3r6d_A 67 LEQAVTNAEVVFVGAMES-------------GSD-MASIVKALSRX--NIRRVIGVS 107 (221)
T ss_dssp HHHHHTTCSEEEESCCCC-------------HHH-HHHHHHHHHHT--TCCEEEEEE
T ss_pred HHHHHcCCCEEEEcCCCC-------------Chh-HHHHHHHHHhc--CCCeEEEEe
Confidence 235778999999987642 334 67777777774 234566555
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=63.12 Aligned_cols=94 Identities=12% Similarity=0.176 Sum_probs=58.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|..++..|...+. ++.+ +|++.++++.... . .+....+..++++++|+|
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~-----~V~~----~~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~D~v 65 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV----SDRNPEAIADVIA----A------GAETASTAKAIAEQCDVI 65 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHH----T------TCEECSSHHHHHHHCSEE
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHH----C------CCeecCCHHHHHhCCCEE
Confidence 6999999 59999999999998763 3544 4666565553322 1 123444556778899999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHH---HHHHhhcCCCeEEEEeCCch
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQG---KALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~---~~i~~~a~p~a~vIvvtNP~ 225 (405)
|++...+ ..+.++. +.+.....++.+|+..+|-.
T Consensus 66 i~~v~~~---------------~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~ 102 (299)
T 1vpd_A 66 ITMLPNS---------------PHVKEVALGENGIIEGAKPGTVLIDMSSIA 102 (299)
T ss_dssp EECCSSH---------------HHHHHHHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred EEECCCH---------------HHHHHHHhCcchHhhcCCCCCEEEECCCCC
Confidence 9874321 1223333 23334334677777777643
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=69.94 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH-hhhhcC--CCcceEEEecCcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLF--PLLREVKIGINPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D-L~d~~~--~~~~~v~i~~~~~eal~d 172 (405)
+|||+|||+ |.+|..++..|...+. ++.+ ++++ +.++..... +.-... .+..++..+. +.+++.+
T Consensus 3 ~mkI~IiGa-G~~G~~~a~~L~~~g~-----~V~~----~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 70 (335)
T 3ghy_A 3 LTRICIVGA-GAVGGYLGARLALAGE-----AINV----LARG-ATLQALQTAGLRLTEDGATHTLPVRATH-DAAALGE 70 (335)
T ss_dssp CCCEEEESC-CHHHHHHHHHHHHTTC-----CEEE----ECCH-HHHHHHHHTCEEEEETTEEEEECCEEES-CHHHHCC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC-----EEEE----EECh-HHHHHHHHCCCEEecCCCeEEEeeeEEC-CHHHcCC
Confidence 579999995 9999999999998764 3655 3443 333322110 000000 0001223333 4456799
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+|+||++.. ...+.++.+.+..+.+++..|+.+.|..
T Consensus 71 ~D~Vilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 71 QDVVIVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp CSEEEECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred CCEEEEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 999999743 1345566666766656788999999995
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00032 Score=69.61 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=60.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.+++||+||| .|.+|..++..|+..|. ++.+ +|++.++++... +. .+....+..+.++++
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~-----~V~v----~dr~~~~~~~l~----~~------g~~~~~s~~e~~~~a 79 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKGGH-----ECVV----YDLNVNAVQALE----RE------GIAGARSIEEFCAKL 79 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHH----TT------TCBCCSSHHHHHHHS
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHH----HC------CCEEeCCHHHHHhcC
Confidence 3457999999 59999999999999774 3544 566666655332 11 112334566777788
Q ss_pred ---cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 174 ---EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 174 ---DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
|+||++...+ .+.++.+.+.....++.+||..+|-
T Consensus 80 ~~~DvVi~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~ 117 (358)
T 4e21_A 80 VKPRVVWLMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNS 117 (358)
T ss_dssp CSSCEEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred CCCCEEEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 9999873210 2333445555555567788888763
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00044 Score=58.86 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.+||+|||+ |.+|..++..|...+. .+.+ .|++.++++..+.++. ..+....+..+.++++|+
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-----~v~v----~~r~~~~~~~~a~~~~-------~~~~~~~~~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY-----KVTV----AGRNIDHVRAFAEKYE-------YEYVLINDIDSLIKNNDV 83 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC-----EEEE----EESCHHHHHHHHHHHT-------CEEEECSCHHHHHHTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EcCCHHHHHHHHHHhC-------CceEeecCHHHHhcCCCE
Confidence 679999995 9999999988876543 2444 5677777766555442 123344556778899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
||.+.+.+. +-... ... .++..++.+++|.++
T Consensus 84 vi~at~~~~-~~~~~------------------~~l-~~g~~vid~~~p~~~ 115 (144)
T 3oj0_A 84 IITATSSKT-PIVEE------------------RSL-MPGKLFIDLGNPPNI 115 (144)
T ss_dssp EEECSCCSS-CSBCG------------------GGC-CTTCEEEECCSSCSB
T ss_pred EEEeCCCCC-cEeeH------------------HHc-CCCCEEEEccCCccC
Confidence 998754331 11111 111 357899999999753
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00059 Score=65.73 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+++||+|||+ |.+|..++..|...+. ++.+ +|++.++++.... . . +.+..+..++++++|
T Consensus 29 ~~~~I~iIG~-G~mG~~~a~~l~~~g~-----~V~~----~~~~~~~~~~~~~----~--g----~~~~~~~~~~~~~~D 88 (316)
T 2uyy_A 29 TDKKIGFLGL-GLMGSGIVSNLLKMGH-----TVTV----WNRTAEKCDLFIQ----E--G----ARLGRTPAEVVSTCD 88 (316)
T ss_dssp CSSCEEEECC-SHHHHHHHHHHHHTTC-----CEEE----ECSSGGGGHHHHH----T--T----CEECSCHHHHHHHCS
T ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCC-----EEEE----EeCCHHHHHHHHH----c--C----CEEcCCHHHHHhcCC
Confidence 4589999995 9999999999998764 3554 4666566553321 1 1 234455667889999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||++.
T Consensus 89 vVi~av 94 (316)
T 2uyy_A 89 ITFACV 94 (316)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999874
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00052 Score=65.67 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=60.2
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhc-----c-cCCCCCceEEEeccccchhhhHHHHHHHhhhhc-CCCc-----ce
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAG-----E-VLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLL-----RE 159 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~-----~-~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~~~~-----~~ 159 (405)
|..++|||+|||+ |.+|..++..|... + . +|.+ +++ .++++....+. ... .... .+
T Consensus 4 m~~~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~-----~V~~----~~r-~~~~~~l~~~~-g~~~~~~~~~~~~~~ 71 (317)
T 2qyt_A 4 MNQQPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL-----EVSW----IAR-GAHLEAIRAAG-GLRVVTPSRDFLARP 71 (317)
T ss_dssp ---CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE-----EEEE----ECC-HHHHHHHHHHT-SEEEECSSCEEEECC
T ss_pred CCCCCCEEEEECc-CHHHHHHHHHHHhCccccCCCC-----CEEE----EEc-HHHHHHHHhcC-CeEEEeCCCCeEEec
Confidence 3344579999995 99999999999986 5 3 3544 344 34444332200 000 0000 01
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 160 v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
+..+ ++.++++++|+||++.... . +.++.+.+..+..++..||.++|-.+.
T Consensus 72 ~~~~-~~~~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~ 122 (317)
T 2qyt_A 72 TCVT-DNPAEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI 122 (317)
T ss_dssp SEEE-SCHHHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred ceEe-cCccccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence 2222 3446678999999874321 1 234445555554456778888887654
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00069 Score=65.11 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=66.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC------
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------ 165 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------ 165 (405)
|..+++|.|+||+|+||++++..|+..|. .|.+ .+++.+.......++.... .. .+.+. .|
T Consensus 2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~--~~~~~~~Dl~d~~~ 69 (341)
T 3enk_A 2 MSTKGTILVTGGAGYIGSHTAVELLAHGY-----DVVI----ADNLVNSKREAIARIEKIT-GK--TPAFHETDVSDERA 69 (341)
T ss_dssp CCSSCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECCCSSSCTHHHHHHHHHH-SC--CCEEECCCTTCHHH
T ss_pred CCCCcEEEEecCCcHHHHHHHHHHHHCCC-----cEEE----EecCCcchHHHHHHHHhhc-CC--CceEEEeecCCHHH
Confidence 44567999999999999999999999774 2433 2333222222222222211 10 11111 11
Q ss_pred cccccC--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 PYELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ~~eal~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..++++ +.|+||.+++..... .....+.+..|+.....+.+.+.+.. . ..||+++
T Consensus 70 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~iv~~S 128 (341)
T 3enk_A 70 LARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA-V-KRIVFSS 128 (341)
T ss_dssp HHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEEE
T ss_pred HHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCC-C-CEEEEEe
Confidence 123444 799999987753210 01223556778888888888888752 3 4555555
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0017 Score=66.92 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=65.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC---C
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d---A 173 (405)
+||+||| +|.+|..++..|+..|. +|.+ .|++.++++....+.. ...+..+.+..+++++ +
T Consensus 16 ~~IgvIG-lG~MG~~lA~~La~~G~-----~V~v----~~r~~~~~~~l~~~~~------~~gi~~~~s~~e~v~~l~~a 79 (480)
T 2zyd_A 16 QQIGVVG-MAVMGRNLALNIESRGY-----TVSI----FNRSREKTEEVIAENP------GKKLVPYYTVKEFVESLETP 79 (480)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHTTTC-----CEEE----ECSSHHHHHHHHHHST------TSCEEECSSHHHHHHTBCSS
T ss_pred CeEEEEc-cHHHHHHHHHHHHhCCC-----eEEE----EeCCHHHHHHHHhhCC------CCCeEEeCCHHHHHhCCCCC
Confidence 5899999 59999999999998774 3555 5676666654433221 0135555566666666 9
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|+||++... + +.++++.+.+..+..++.+||..+|-..
T Consensus 80 DvVil~Vp~----~-----------~~v~~vl~~l~~~l~~g~iIId~s~g~~ 117 (480)
T 2zyd_A 80 RRILLMVKA----G-----------AGTDAAIDSLKPYLDKGDIIIDGGNTFF 117 (480)
T ss_dssp CEEEECSCS----S-----------SHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred CEEEEECCC----H-----------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 999987321 1 1234444556665556788888998653
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0006 Score=61.60 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c-------Cccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I-------NPYE 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~-------~~~e 168 (405)
|||.|+||+|++|++++..|+..|. .+.+ .+++.++++.. .++.+. . ...+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~-----~V~~----~~R~~~~~~~~------------~~~~~~~~D~~d~~~~~~~ 59 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY-----QIYA----GARKVEQVPQY------------NNVKAVHFDVDWTPEEMAK 59 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC-----EEEE----EESSGGGSCCC------------TTEEEEECCTTSCHHHHHT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCccchhhc------------CCceEEEecccCCHHHHHH
Confidence 5899999999999999999998763 2433 34443332211 111111 1 1235
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+++++|+||.+++.... +.+..|..-...+.+.+++. .-..+|.++-
T Consensus 60 ~~~~~d~vi~~ag~~~~------~~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS 106 (219)
T 3dqp_A 60 QLHGMDAIINVSGSGGK------SLLKVDLYGAVKLMQAAEKA--EVKRFILLST 106 (219)
T ss_dssp TTTTCSEEEECCCCTTS------SCCCCCCHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred HHcCCCEEEECCcCCCC------CcEeEeHHHHHHHHHHHHHh--CCCEEEEECc
Confidence 68899999998875431 23445666666777777764 2346666664
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0024 Score=65.71 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=63.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC---CC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---dA 173 (405)
|||+||| +|.+|..++..|+..|. +|.+ .|++.++++....+... . +....+..+.+..+.++ ++
T Consensus 2 MkIgVIG-~G~mG~~lA~~La~~G~-----~V~v----~dr~~~~~~~l~~~~g~-~-~~~~~i~~~~~~~e~v~~l~~a 69 (478)
T 1pgj_A 2 MDVGVVG-LGVMGANLALNIAEKGF-----KVAV----FNRTYSKSEEFMKANAS-A-PFAGNLKAFETMEAFAASLKKP 69 (478)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECSSHHHHHHHHHHTTT-S-TTGGGEEECSCHHHHHHHBCSS
T ss_pred CEEEEEC-hHHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhcCC-C-CCCCCeEEECCHHHHHhcccCC
Confidence 6899999 59999999999998774 3555 56666666644432110 0 11123555555555555 59
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|+||++... + +.+.++.+.+..+..++.+||..+|-..
T Consensus 70 DvVilaVp~----~-----------~~v~~vl~~l~~~l~~g~iIId~sng~~ 107 (478)
T 1pgj_A 70 RKALILVQA----G-----------AATDSTIEQLKKVFEKGDILVDTGNAHF 107 (478)
T ss_dssp CEEEECCCC----S-----------HHHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred CEEEEecCC----h-----------HHHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence 999987431 1 1233444555555446778888887653
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00022 Score=69.03 Aligned_cols=121 Identities=12% Similarity=-0.017 Sum_probs=69.0
Q ss_pred hhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-CcceEEEe-cC---
Q 015501 91 KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIG-IN--- 165 (405)
Q Consensus 91 ~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-~~~~v~i~-~~--- 165 (405)
.|..+++||.|+||+|++|++++..|+..|. .|.. .++..........++...... ...++.+. .|
T Consensus 20 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 90 (351)
T 3ruf_A 20 QLIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-----VVIG----LDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRD 90 (351)
T ss_dssp HHHHSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTC
T ss_pred hCCCCCCeEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCCCCchhhhhhhhhccccccCCceEEEEccCCC
Confidence 4445678999999999999999999998764 2433 223211111122222211000 00122221 11
Q ss_pred ---cccccCCCcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 ---PYELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ---~~eal~dADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..++++++|+||.+++....+. .+.......|+.-...+.+.+.+.. .. .+|.++
T Consensus 91 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~-~~v~~S 150 (351)
T 3ruf_A 91 LTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-VQ-SFTYAA 150 (351)
T ss_dssp HHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CS-EEEEEE
T ss_pred HHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEEe
Confidence 2356789999999887422111 1233456788888888888888752 33 455554
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0038 Score=64.04 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--- 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--- 172 (405)
++||+||| +|.+|..++..|+..|. +|.+ .|++.++++....+.. ...+..+.+..+.+++
T Consensus 5 ~~~IgvIG-~G~mG~~lA~~L~~~G~-----~V~v----~dr~~~~~~~l~~~~~------~~gi~~~~s~~e~v~~l~~ 68 (474)
T 2iz1_A 5 QANFGVVG-MAVMGKNLALNVESRGY-----TVAI----YNRTTSKTEEVFKEHQ------DKNLVFTKTLEEFVGSLEK 68 (474)
T ss_dssp TBSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECSSHHHHHHHHHHTT------TSCEEECSSHHHHHHTBCS
T ss_pred CCcEEEEe-eHHHHHHHHHHHHhCCC-----EEEE----EcCCHHHHHHHHHhCc------CCCeEEeCCHHHHHhhccC
Confidence 36899999 59999999999998764 3554 5676666664443221 0134455555566555
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
+|+||++... + +.+.++.+.+..+..++.+||..+|-....+
T Consensus 69 aDvVilavp~----~-----------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~ 110 (474)
T 2iz1_A 69 PRRIMLMVQA----G-----------AATDATIKSLLPLLDIGDILIDGGNTHFPDT 110 (474)
T ss_dssp SCEEEECCCT----T-----------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHH
T ss_pred CCEEEEEccC----c-----------hHHHHHHHHHHhhCCCCCEEEECCCCCHHHH
Confidence 9999987321 1 2344444556665556778888888654333
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.001 Score=64.18 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.++||+||| .|.+|..++..|+..+. ++.+ .|++.++++.... . ......+..+++++||
T Consensus 8 ~~~~IgiIG-~G~mG~~~A~~l~~~G~-----~V~~----~dr~~~~~~~~~~----~------g~~~~~~~~e~~~~aD 67 (306)
T 3l6d_A 8 FEFDVSVIG-LGAMGTIMAQVLLKQGK-----RVAI----WNRSPGKAAALVA----A------GAHLCESVKAALSASP 67 (306)
T ss_dssp CSCSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECSSHHHHHHHHH----H------TCEECSSHHHHHHHSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHH----C------CCeecCCHHHHHhcCC
Confidence 467999999 59999999999998775 3554 4676666654332 1 1234456778889999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||++.
T Consensus 68 vVi~~v 73 (306)
T 3l6d_A 68 ATIFVL 73 (306)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 999873
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00087 Score=63.83 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||.|+||+|++|++++..|+..+. .|.. .+++..... +.... ....++. .....++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~-----~~~~~-~~~~Dl~-~~~~~~~~~~~d~ 65 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN-----TPII----LTRSIGNKA-----INDYE-YRVSDYT-LEDLINQLNDVDA 65 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCCC----------CCE-EEECCCC-HHHHHHHTTTCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----EEEE----EeCCCCccc-----CCceE-EEEcccc-HHHHHHhhcCCCE
Confidence 36999999999999999999998764 2433 233322211 11111 0011222 2223467889999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||.+++..... +..+....|+.....+.+.+.+.. .. .+|.++
T Consensus 66 Vih~a~~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~-~~-r~v~~S 108 (311)
T 3m2p_A 66 VVHLAATRGSQ--GKISEFHDNEILTQNLYDACYENN-IS-NIVYAS 108 (311)
T ss_dssp EEECCCCCCSS--SCGGGTHHHHHHHHHHHHHHHHTT-CC-EEEEEE
T ss_pred EEEccccCCCC--ChHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEEc
Confidence 99987753322 444567788888899999888852 33 455544
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00067 Score=64.36 Aligned_cols=65 Identities=9% Similarity=0.098 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+||||+||| +|.+|..++..|...+. ++.+ +| +.++++.... . . +....+..++++++|
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~-----~V~~----~~-~~~~~~~~~~----~--g----~~~~~~~~~~~~~~D 60 (295)
T 1yb4_A 2 NAMKLGFIG-LGIMGSPMAINLARAGH-----QLHV----TT-IGPVADELLS----L--G----AVNVETARQVTEFAD 60 (295)
T ss_dssp --CEEEECC-CSTTHHHHHHHHHHTTC-----EEEE----CC-SSCCCHHHHT----T--T----CBCCSSHHHHHHTCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-----EEEE----Ec-CHHHHHHHHH----c--C----CcccCCHHHHHhcCC
Confidence 467999999 59999999999998663 3443 34 4455443321 1 1 122345567788999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||++.
T Consensus 61 ~vi~~v 66 (295)
T 1yb4_A 61 IIFIMV 66 (295)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999874
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0015 Score=61.93 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=59.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||.|+||+|+||++++..|+..|. +|.. ..++.+.. .+.....+.+++.++|.|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-----~V~~----l~R~~~~~----------------~~~~~~~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-----EVTL----VSRKPGPG----------------RITWDELAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCCTT----------------EEEHHHHHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCCCcC----------------eeecchhhHhhccCCCEE
Confidence 7999999999999999999999875 2432 12221110 111111234677899999
Q ss_pred EEeCCcCC-----CCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 015501 177 LLIGAKPR-----GPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (405)
Q Consensus 177 Ii~~g~~~-----k~g~-~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv 221 (405)
|..++.+- .+.. ........|....+.+.+.+.+...+..++|..
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~ 106 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV 106 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 98765321 1111 133456677777777877777653223334433
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00076 Score=64.79 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||+||||+|.+|..++..|...|. .+.+ +|++.+. +..+++++||+
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~-----~V~~----~~~~~~~-----------------------~~~~~~~~aDv 68 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGY-----PISI----LDREDWA-----------------------VAESILANADV 68 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTC-----CEEE----ECTTCGG-----------------------GHHHHHTTCSE
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCC-----eEEE----EECCccc-----------------------CHHHHhcCCCE
Confidence 35899999449999999999998764 2544 3443321 23467889999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
||++... +.+.++.+.+..+.+++++|+.++.
T Consensus 69 Vilavp~----------------~~~~~vl~~l~~~l~~~~iv~~~~s 100 (298)
T 2pv7_A 69 VIVSVPI----------------NLTLETIERLKPYLTENMLLADLTS 100 (298)
T ss_dssp EEECSCG----------------GGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCcEEEECCC
Confidence 9997431 1244455556555456776666543
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00048 Score=68.82 Aligned_cols=100 Identities=15% Similarity=0.021 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEecccc---chhhhHHHHHHHhh---hhcCC-C-----cceEE-
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSE---RSLQALEGVAMELE---DSLFP-L-----LREVK- 161 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d---~~~~~l~g~a~DL~---d~~~~-~-----~~~v~- 161 (405)
||||+|||| |.+|..++..|+.. |. ++.+ ++ ++.+.++....+-. ..... . ...+.
T Consensus 2 ~mkI~ViGa-G~~G~~~a~~La~~~G~-----~V~~----~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 71 (404)
T 3c7a_A 2 TVKVCVCGG-GNGAHTLSGLAASRDGV-----EVRV----LTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKV 71 (404)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTSTTE-----EEEE----ECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSE
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCCC-----EEEE----EeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceE
Confidence 479999995 99999999999863 53 3544 34 55455443211100 00000 0 01122
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 015501 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (405)
Q Consensus 162 i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv 221 (405)
++++..+++++||+||++... ....++.+.+..+..++.+|+..
T Consensus 72 ~~~~~~~a~~~aD~Vilav~~----------------~~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 72 ITKDPEIAISGADVVILTVPA----------------FAHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp EESCHHHHHTTCSEEEECSCG----------------GGHHHHHHHHTTTCCTTCEEEET
T ss_pred EeCCHHHHhCCCCEEEEeCch----------------HHHHHHHHHHHhhCCCCcEEEEc
Confidence 445556789999999997432 11345566666665566666553
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.002 Score=66.42 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--- 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--- 171 (405)
.++||+||| .|.+|..++..|+..|. +|.+ .|++.++++..... .. ...++..+.+..+.++
T Consensus 3 ~~~kIgiIG-lG~MG~~lA~~L~~~G~-----~V~v----~dr~~~~~~~l~~~---g~--~g~~i~~~~s~~e~v~~l~ 67 (484)
T 4gwg_A 3 AQADIALIG-LAVMGQNLILNMNDHGF-----VVCA----FNRTVSKVDDFLAN---EA--KGTKVVGAQSLKEMVSKLK 67 (484)
T ss_dssp CCBSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECSSTHHHHHHHHT---TT--TTSSCEECSSHHHHHHTBC
T ss_pred CCCEEEEEC-hhHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHhc---cc--CCCceeccCCHHHHHhhcc
Confidence 467999999 59999999999999875 3555 56766666544321 00 0112333344445443
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
++|+||++... + +.+.++.+.+..+..++.+||..+|-.
T Consensus 68 ~aDvVil~Vp~----~-----------~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 68 KPRRIILLVKA----G-----------QAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp SSCEEEECSCS----S-----------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCCEEEEecCC----h-----------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 69999987321 1 234445556666555778888888743
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0033 Score=60.41 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ec------Ccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~------~~~ 167 (405)
++++|.|+||+|+||++++..|+..|. .|... .++.+..... .++.+.. ....++.+ .. ...
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~-~~~~~~~-~~~~~~~~~~~Dl~d~~~~~ 72 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGY-----TVRAT----VRDPTNVKKV-KHLLDLP-KAETHLTLWKADLADEGSFD 72 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESCTTCHHHH-HHHHTST-THHHHEEEEECCTTSTTTTH
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEE----ECCcchhHHH-HHHHhcc-cCCCeEEEEEcCCCCHHHHH
Confidence 457999999999999999999998764 24321 2222221111 1111100 00011221 11 123
Q ss_pred cccCCCcEEEEeCCcCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~-r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++++++|+||.+++.......+ ....+..|+.-...+.+.+.+.. .-..||.++-
T Consensus 73 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~~riV~~SS 128 (337)
T 2c29_D 73 EAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAK-TVRRLVFTSS 128 (337)
T ss_dssp HHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHS-CCCEEEEECC
T ss_pred HHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC-CccEEEEeee
Confidence 5678999999887643111112 22467788888888888887752 2356666664
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0014 Score=63.38 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.|+||++|| .|.+|+.++..|+..|. ++.. .|++.++++..+. .. .+...+..|++++||
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~-----~v~v----~dr~~~~~~~l~~----~G------a~~a~s~~e~~~~~d 61 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAGY-----LLNV----FDLVQSAVDGLVA----AG------ASAARSARDAVQGAD 61 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHH----TT------CEECSSHHHHHTTCS
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCCC-----eEEE----EcCCHHHHHHHHH----cC------CEEcCCHHHHHhcCC
Confidence 478999999 79999999999999775 3444 5677676654432 11 234456778899999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+||++
T Consensus 62 vv~~~ 66 (300)
T 3obb_A 62 VVISM 66 (300)
T ss_dssp EEEEC
T ss_pred ceeec
Confidence 99986
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0024 Score=61.64 Aligned_cols=121 Identities=7% Similarity=-0.025 Sum_probs=66.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||| |.+|..++..|. .+. ++.+ ++++.++++....+=.....+-...........++..++|+|
T Consensus 3 mkI~IiGa-Ga~G~~~a~~L~-~g~-----~V~~----~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (307)
T 3ego_A 3 LKIGIIGG-GSVGLLCAYYLS-LYH-----DVTV----VTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLL 71 (307)
T ss_dssp CEEEEECC-SHHHHHHHHHHH-TTS-----EEEE----ECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHh-cCC-----ceEE----EECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEE
Confidence 79999995 999999999998 653 3655 455555544332210000000000001111113567899999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeecchh
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~gt~L 250 (405)
|++.. + .-+.++.+.+..+ .++. ||.+.|-++..- .+.+. +|. ++++..+..
T Consensus 72 ilavK----~------------~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e-~l~~~---~~~~~vl~g~~~~ 124 (307)
T 3ego_A 72 VVTVK----Q------------HQLQSVFSSLERI-GKTN-ILFLQNGMGHIH-DLKDW---HVGHSIYVGIVEH 124 (307)
T ss_dssp EECCC----G------------GGHHHHHHHTTSS-CCCE-EEECCSSSHHHH-HHHTC---CCSCEEEEEEECC
T ss_pred EEEeC----H------------HHHHHHHHHhhcC-CCCe-EEEecCCccHHH-HHHHh---CCCCcEEEEEEee
Confidence 98742 1 1233445556655 3677 888999887542 33332 343 666655443
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00078 Score=65.78 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=70.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC------
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------ 165 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------ 165 (405)
.+.++|.|+||+|++|++++..|+.. |.. .|.+ .+++..++.....++.+ .++.+. .|
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~----~V~~----~~r~~~~~~~~~~~~~~------~~v~~~~~Dl~d~~~ 84 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAK----KIIV----YSRDELKQSEMAMEFND------PRMRFFIGDVRDLER 84 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCS----EEEE----EESCHHHHHHHHHHHCC------TTEEEEECCTTCHHH
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCC----EEEE----EECChhhHHHHHHHhcC------CCEEEEECCCCCHHH
Confidence 34579999999999999999999987 531 2433 35555555444433321 112211 11
Q ss_pred cccccCCCcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 PYELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..++++++|+||.+++....+. .+....+..|+.-...+++.+.+. + -..+|.+|
T Consensus 85 l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~-v~~~V~~S 141 (344)
T 2gn4_A 85 LNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-A-ISQVIALS 141 (344)
T ss_dssp HHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-T-CSEEEEEC
T ss_pred HHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-C-CCEEEEec
Confidence 2356789999999887543211 123356678888888888888875 2 34566665
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0026 Score=58.87 Aligned_cols=121 Identities=11% Similarity=-0.022 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL---- 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~-~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea---- 169 (405)
++++|.|+||+|.||.+++..|+. .|. .+.+ .+++.+.++....++.+.. ....-+..-..+.+.
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~ 72 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-----DVVL----TARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRAL 72 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-----EEEE----EESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-----eEEE----EeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHH
Confidence 457899999999999999999998 664 2444 4555566665555554321 100001111112222
Q ss_pred c-------CCCcEEEEeCCcCCCCCC------chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 F-------EDAEWALLIGAKPRGPGM------ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 l-------~dADiVIi~~g~~~k~g~------~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+ ...|+||..+|....... +-...+..|..-...+.+.+.++..+.+.||+++--.
T Consensus 73 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~ 141 (276)
T 1wma_A 73 RDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM 141 (276)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred HHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChh
Confidence 2 278999998875432211 1123466776666677777766532346788887643
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00049 Score=62.95 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+++||+||| +|.+|..++..|...+. ++.+ .|++.++++. +.+. .+... +..++++++|
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~-----~V~~----~~r~~~~~~~----~~~~------g~~~~-~~~~~~~~~D 85 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGF-----KVVV----GSRNPKRTAR----LFPS------AAQVT-FQEEAVSSPE 85 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----EESSHHHHHH----HSBT------TSEEE-EHHHHTTSCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHH----HHHc------CCcee-cHHHHHhCCC
Confidence 357999999 59999999999998764 3544 4666555432 2211 12222 4567889999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~ 227 (405)
+||++... .. ..++ + + +.... ++.+|+.++|....
T Consensus 86 vVi~av~~----~~-~~~v-------~-~----l~~~~-~~~~vv~~s~g~~~ 120 (215)
T 2vns_A 86 VIFVAVFR----EH-YSSL-------C-S----LSDQL-AGKILVDVSNPTEQ 120 (215)
T ss_dssp EEEECSCG----GG-SGGG-------G-G----GHHHH-TTCEEEECCCCCHH
T ss_pred EEEECCCh----HH-HHHH-------H-H----HHHhc-CCCEEEEeCCCccc
Confidence 99987431 11 1111 1 1 22333 57799999998754
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0027 Score=61.18 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=66.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH-hhhhcCCCcc-----eEEEecCccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLR-----EVKIGINPYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D-L~d~~~~~~~-----~v~i~~~~~eal 170 (405)
|||+|||| |.+|..++..|...|. ++.+ ++++. .+....+ +. .. .... .+.++. +.+++
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~-----~V~~----~~r~~--~~~i~~~g~~-~~-~~~g~~~~~~~~~~~-~~~~~ 67 (312)
T 3hn2_A 3 LRIAIVGA-GALGLYYGALLQRSGE-----DVHF----LLRRD--YEAIAGNGLK-VF-SINGDFTLPHVKGYR-APEEI 67 (312)
T ss_dssp -CEEEECC-STTHHHHHHHHHHTSC-----CEEE----ECSTT--HHHHHHTCEE-EE-ETTCCEEESCCCEES-CHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEE----EEcCc--HHHHHhCCCE-EE-cCCCeEEEeeceeec-CHHHc
Confidence 69999995 9999999999998763 3665 34432 2222110 00 00 0001 122333 45667
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceee
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHA 246 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~ 246 (405)
.++|+||++.. + .-+.++.+.++.+.+++..||.+.|-.+....+ .+..+. .++++.
T Consensus 68 ~~~D~vilavk----~------------~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l-~~~~~~--~~v~~~ 124 (312)
T 3hn2_A 68 GPMDLVLVGLK----T------------FANSRYEELIRPLVEEGTQILTLQNGLGNEEAL-ATLFGA--ERIIGG 124 (312)
T ss_dssp CCCSEEEECCC----G------------GGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHH-HHHTCG--GGEEEE
T ss_pred CCCCEEEEecC----C------------CCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHH-HHHCCC--CcEEEE
Confidence 89999998732 1 112344555666555788999999988755433 344331 255554
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0018 Score=62.71 Aligned_cols=121 Identities=18% Similarity=0.142 Sum_probs=65.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH-hhhhcCCCcce-----EEEecCccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLRE-----VKIGINPYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D-L~d~~~~~~~~-----v~i~~~~~eal 170 (405)
|||+|||+ |.+|..++..|...+. ++.+ ++++. .+....+ +. .......+ +.++.+..++.
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~-----~V~~----~~r~~--~~~i~~~Gl~-~~~~~~g~~~~~~~~~~~~~~~~~ 69 (320)
T 3i83_A 3 LNILVIGT-GAIGSFYGALLAKTGH-----CVSV----VSRSD--YETVKAKGIR-IRSATLGDYTFRPAAVVRSAAELE 69 (320)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHTTC-----EEEE----ECSTT--HHHHHHHCEE-EEETTTCCEEECCSCEESCGGGCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EeCCh--HHHHHhCCcE-EeecCCCcEEEeeeeeECCHHHcC
Confidence 79999995 9999999999998763 3555 34432 1222111 00 00001112 23344444444
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeecch
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~gt~ 249 (405)
+++|+||++... .. +.++.+.+..+.+++..|+.+.|-.+..- .+.+..+. .++++..+.
T Consensus 70 ~~~DlVilavK~----~~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~-~l~~~~~~--~~vl~g~~~ 129 (320)
T 3i83_A 70 TKPDCTLLCIKV----VE------------GADRVGLLRDAVAPDTGIVLISNGIDIEP-EVAAAFPD--NEVISGLAF 129 (320)
T ss_dssp SCCSEEEECCCC----CT------------TCCHHHHHTTSCCTTCEEEEECSSSSCSH-HHHHHSTT--SCEEEEEEE
T ss_pred CCCCEEEEecCC----CC------------hHHHHHHHHhhcCCCCEEEEeCCCCChHH-HHHHHCCC--CcEEEEEEE
Confidence 599999987321 11 11233444555457788999999875432 23344332 356554333
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0026 Score=61.06 Aligned_cols=113 Identities=10% Similarity=0.057 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh-hhHHHHHHHhhhhcCCCcceEEE-ecC--c----c
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKI-GIN--P----Y 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~-~~l~g~a~DL~d~~~~~~~~v~i-~~~--~----~ 167 (405)
|+||.|+||+|+||++++..|+..|. .|.+ .+++. ........++.+. + ++.+ ..| + .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~l~~~--~---~~~~~~~Dl~d~~~~~ 66 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGI-----DLIV----FDNLSRKGATDNLHWLSSL--G---NFEFVHGDIRNKNDVT 66 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCCSTTHHHHHHHHHTT--C---CCEEEECCTTCHHHHH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCC-----EEEE----EeCCCccCchhhhhhhccC--C---ceEEEEcCCCCHHHHH
Confidence 57999999999999999999998764 2433 22210 1111112223221 1 1111 111 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~d--ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+++++ +|+||.+++..... ..+....+..|+.-...+.+.+.+.. ..+.||.++-
T Consensus 67 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~~~~iv~~SS 125 (347)
T 1orr_A 67 RLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSST 125 (347)
T ss_dssp HHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred HHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEecc
Confidence 45566 99999988753210 01223456788888888998888863 5556776664
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0052 Score=63.12 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc---CCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF---EDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal---~dA 173 (405)
+||+||| +|.+|..++..|+..|. +|.+ .|++.++++..... .. + ...+..+.+..+.+ +++
T Consensus 3 m~IgvIG-~G~mG~~lA~~La~~G~-----~V~v----~dr~~~~~~~l~~~---~~-~-g~gi~~~~~~~e~v~~l~~a 67 (482)
T 2pgd_A 3 ADIALIG-LAVMGQNLILNMNDHGF-----VVCA----FNRTVSKVDDFLAN---EA-K-GTKVLGAHSLEEMVSKLKKP 67 (482)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECSSTHHHHHHHHT---TT-T-TSSCEECSSHHHHHHHBCSS
T ss_pred CeEEEEC-hHHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHhc---cc-c-CCCeEEeCCHHHHHhhccCC
Confidence 6899999 59999999999998774 3554 46666666544321 00 0 01234444555554 599
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
|+||++... + +.+.++.+.+..+..++.+||..+|-.
T Consensus 68 DvVilaVp~----~-----------~~v~~vl~~l~~~l~~g~iII~~s~~~ 104 (482)
T 2pgd_A 68 RRIILLVKA----G-----------QAVDNFIEKLVPLLDIGDIIIDGGNSE 104 (482)
T ss_dssp CEEEECSCT----T-----------HHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred CEEEEeCCC----h-----------HHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 999987321 1 123344445555544677888887754
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00033 Score=67.53 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC------cc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------~~ 167 (405)
+.|+|.|+||+|+||++++..|+..|. .|.+ .+++.........++ .++.+. .| ..
T Consensus 19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~l--------~~v~~~~~Dl~d~~~~~ 81 (330)
T 2pzm_A 19 SHMRILITGGAGCLGSNLIEHWLPQGH-----EILV----IDNFATGKREVLPPV--------AGLSVIEGSVTDAGLLE 81 (330)
T ss_dssp TCCEEEEETTTSHHHHHHHHHHGGGTC-----EEEE----EECCSSSCGGGSCSC--------TTEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCCccchhhhhcc--------CCceEEEeeCCCHHHHH
Confidence 457999999999999999999998763 2433 233211111000001 122211 11 12
Q ss_pred cccC--CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~--dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++++ ++|+||.+++.......+..+ +..|+.-...+.+.+.+. .-+.||.++-
T Consensus 82 ~~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~--~~~~iV~~SS 136 (330)
T 2pzm_A 82 RAFDSFKPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKA--GVKRLLNFQT 136 (330)
T ss_dssp HHHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHH--TCSEEEEEEE
T ss_pred HHHhhcCCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHc--CCCEEEEecC
Confidence 4556 899999988754321122223 677888888888888775 2346666653
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0014 Score=62.34 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||.|+||+|+||++++..|+..|. .+.+ ..++....+. +.........++.- ....++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-----~v~~----~~~~~~~~~~----~~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNE-----IVVI----DNLSSGNEEF----VNEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSC-----EEEE----CCCSSCCGGG----SCTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-----EEEE----EcCCCCChhh----cCCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 57899999999999999999998762 2333 1221111110 00000000001100 123456789999
Q ss_pred EEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
||.+++.+.. ...+....+..|+.-...+.+.+.+.. -..+|.++-
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS 114 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG--VSRIVFTST 114 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEECC
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEeCc
Confidence 9998775421 122344567888888888888888752 346666664
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00083 Score=60.00 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhh----HHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA----LEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~----l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
++||.|+||+|.+|++++..|+..+.+. ++.+ .+++.+. ++-...|+.+. ....+++
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~---~V~~----~~r~~~~~~~~~~~~~~D~~~~-----------~~~~~~~- 65 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLA---KVIA----PARKALAEHPRLDNPVGPLAEL-----------LPQLDGS- 65 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCC---EEEC----CBSSCCCCCTTEECCBSCHHHH-----------GGGCCSC-
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCC---eEEE----EeCCCcccCCCceEEeccccCH-----------HHHHHhh-
Confidence 4699999999999999999999976421 2332 3343222 00000111110 0112233
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+|+||.+++.......+..+....|......+++.+.+. .-..+|.++-
T Consensus 66 -~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~Ss 114 (215)
T 2a35_A 66 -IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM--GARHYLVVSA 114 (215)
T ss_dssp -CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred -hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHc--CCCEEEEECC
Confidence 899999877532112234456677888888888888775 2335666654
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0038 Score=59.84 Aligned_cols=116 Identities=13% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c------Cccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~------~~~e 168 (405)
++||.|+||+|+||++++..|+..|. .|.....+.+. .+.+. ...++... .++.+. . ...+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-----~V~~~~r~~~~-~~~~~-~~~~~~~~-----~~~~~~~~Dl~d~~~~~~ 76 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY-----AVNTTVRDPDN-QKKVS-HLLELQEL-----GDLKIFRADLTDELSFEA 76 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC-----EEEEEESCTTC-TTTTH-HHHHHGGG-----SCEEEEECCTTTSSSSHH
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEEcCcch-hhhHH-HHHhcCCC-----CcEEEEecCCCChHHHHH
Confidence 46899999999999999999998764 24321111111 11111 11122210 112211 1 1235
Q ss_pred ccCCCcEEEEeCCcCCCCCCch-hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 LFEDAEWALLIGAKPRGPGMER-AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r-~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+++++|+||.+++...-...+. .+.+..|+.-...+.+.+.+.. .-..||.++-.
T Consensus 77 ~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~v~r~V~~SS~ 132 (338)
T 2rh8_A 77 PIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAK-SVKRVILTSSA 132 (338)
T ss_dssp HHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCT-TCCEEEEECCH
T ss_pred HHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC-CcCEEEEEecH
Confidence 6789999998876431111111 2366788888888888887742 23467777643
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0031 Score=61.39 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh--cccCCCCCceEEEeccccchhhhHHHH---HHHhhhhcCCCcceEE-EecC--c
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA--GEVLGPDQPIALKLLGSERSLQALEGV---AMELEDSLFPLLREVK-IGIN--P 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~--~~~~~~d~~i~L~l~~~d~~~~~l~g~---a~DL~d~~~~~~~~v~-i~~~--~ 166 (405)
++++|.|+||+|+||++++..|+. .|. .|.+ .+++....... ...+.+........+. +..| +
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 79 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKA-----KVVV----LDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINN 79 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTS-----EEEE----EECCCCC-------CCCCCCGGGGTTCCSEEEECCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC-----eEEE----EECCCccccccccchhhhhhhhhccccCceEEECCCCC
Confidence 468999999999999999999998 554 2433 22221100000 0000000000000111 1111 1
Q ss_pred ----ccc-cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 ----YEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ----~ea-l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.++ ..++|+||.+++.......+....+..|+.-...+.+.+++.. +.||.++-
T Consensus 80 ~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~~~V~~SS 138 (362)
T 3sxp_A 80 PLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKK---AKVIYASS 138 (362)
T ss_dssp HHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTT---CEEEEEEE
T ss_pred HHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEeCc
Confidence 123 6799999998875432223445677889888899999888752 33555554
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00041 Score=67.79 Aligned_cols=108 Identities=9% Similarity=0.061 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC---c---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P--- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~---~--- 166 (405)
.|+||.|+||+|++|++++..|+.. +. .|.. .+++.+.+.. +.+. .++++. .| +
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-----~V~~----~~r~~~~~~~----~~~~-----~~v~~~~~Dl~~d~~~ 84 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDW-----EVFG----MDMQTDRLGD----LVKH-----ERMHFFEGDITINKEW 84 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSC-----EEEE----EESCCTTTGG----GGGS-----TTEEEEECCTTTCHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCC-----EEEE----EeCChhhhhh----hccC-----CCeEEEeCccCCCHHH
Confidence 4689999999999999999999986 53 2433 2343332221 1110 112221 11 1
Q ss_pred -ccccCCCcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 -YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 -~eal~dADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.++++++|+||.+++...... .+..+.+..|+.....+.+.+.+. + ..+|.++-
T Consensus 85 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~--~~~v~~SS 141 (372)
T 3slg_A 85 VEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 141 (372)
T ss_dssp HHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T--CEEEEECC
T ss_pred HHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C--CcEEEeCc
Confidence 235678999999877432111 123345567777777888888876 3 56777765
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0065 Score=62.79 Aligned_cols=99 Identities=9% Similarity=0.134 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC---C
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d---A 173 (405)
.||+||| +|.+|..++..|+..|. +|.+ .|++.++++..... .. + ...+..+.+..+++++ +
T Consensus 11 ~~IgvIG-lG~MG~~lA~~La~~G~-----~V~v----~dr~~~~~~~l~~~---~~-~-~~gi~~~~s~~e~v~~l~~a 75 (497)
T 2p4q_A 11 ADFGLIG-LAVMGQNLILNAADHGF-----TVCA----YNRTQSKVDHFLAN---EA-K-GKSIIGATSIEDFISKLKRP 75 (497)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECSSSHHHHHHHHT---TT-T-TSSEECCSSHHHHHHTSCSS
T ss_pred CCEEEEe-eHHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHcc---cc-c-CCCeEEeCCHHHHHhcCCCC
Confidence 5899999 59999999999999875 3555 56666666543320 00 0 0124444555566665 9
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
|+||++... .+.++++.+.+..+..++.+||..+|-.
T Consensus 76 DvVil~Vp~---------------~~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 76 RKVMLLVKA---------------GAPVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp CEEEECCCS---------------SHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CEEEEEcCC---------------hHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 999987321 1234555566666655677888888854
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0042 Score=60.83 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.+||+||| +|.+|.+++..|...+. .+.+ .+++.+.....+.+. . +.+. +..+++++||+
T Consensus 16 ~~~I~IIG-~G~mG~alA~~L~~~G~-----~V~~----~~~~~~~~~~~a~~~-----G----~~~~-~~~e~~~~aDv 75 (338)
T 1np3_A 16 GKKVAIIG-YGSQGHAHACNLKDSGV-----DVTV----GLRSGSATVAKAEAH-----G----LKVA-DVKTAVAAADV 75 (338)
T ss_dssp TSCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECCTTCHHHHHHHHT-----T----CEEE-CHHHHHHTCSE
T ss_pred CCEEEEEC-chHHHHHHHHHHHHCcC-----EEEE----EECChHHHHHHHHHC-----C----CEEc-cHHHHHhcCCE
Confidence 46899999 59999999999998774 2544 344433322222211 1 1233 55678899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHH-HHHhhcCCCeEEEEeCCchh
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGK-ALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~-~i~~~a~p~a~vIvvtNP~d 226 (405)
||++.. .....++.+ .+..+.+++++|+.+ ...+
T Consensus 76 Vilavp----------------~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~ 110 (338)
T 1np3_A 76 VMILTP----------------DEFQGRLYKEEIEPNLKKGATLAFA-HGFS 110 (338)
T ss_dssp EEECSC----------------HHHHHHHHHHHTGGGCCTTCEEEES-CCHH
T ss_pred EEEeCC----------------cHHHHHHHHHHHHhhCCCCCEEEEc-CCch
Confidence 999732 122344554 565555456666644 4443
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0072 Score=58.19 Aligned_cols=111 Identities=13% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC-cccccCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN-PYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~-~~eal~d 172 (405)
+++||.|+||+|++|++++..|+..+. .|.+ .+++...... .+.+.. . ..++.+. .+ ...++.+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~---~~~~~~-~-~~~~~~~~~D~~~~~~~~ 91 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGH-----EVTV----VDNFFTGRKR---NVEHWI-G-HENFELINHDVVEPLYIE 91 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCSSCCGG---GTGGGT-T-CTTEEEEECCTTSCCCCC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCC-----EEEE----EeCCCccchh---hhhhhc-c-CCceEEEeCccCChhhcC
Confidence 468999999999999999999998763 2433 2222111000 111111 0 0123322 12 2346789
Q ss_pred CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 173 AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 173 ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+|+||.+++..... ..+....+..|+.....+.+.+.+.. ..+|.++
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~S 140 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG---ARLLLAS 140 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT---CEEEEEE
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC---CcEEEEC
Confidence 99999987743211 11233456788888888888888752 3666655
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0016 Score=64.07 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c----Ccccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I----NPYEL 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~----~~~ea 169 (405)
+|+||.|+||+|++|++++..|+..+. .|.+ .+++...... +... .. .+... . ...++
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~----~~~~--~v--~~~~~Dl~d~~~~~~~ 90 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGH-----YVIA----SDWKKNEHMT----EDMF--CD--EFHLVDLRVMENCLKV 90 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCCSSSC----GGGT--CS--EEEECCTTSHHHHHHH
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCC-----eEEE----EECCCccchh----hccC--Cc--eEEECCCCCHHHHHHH
Confidence 578999999999999999999998763 2433 2332221110 0000 00 11110 1 12356
Q ss_pred cCCCcEEEEeCCcCCCC---CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 170 FEDAEWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~---g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++++|+||.+++..... ..+....+..|..-...+.+.+.+. +. ..+|.++
T Consensus 91 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~-~~~V~~S 144 (379)
T 2c5a_A 91 TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GI-KRFFYAS 144 (379)
T ss_dssp HTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TC-SEEEEEE
T ss_pred hCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEe
Confidence 77999999987753211 1234456677888888888888774 22 3555555
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00092 Score=64.47 Aligned_cols=116 Identities=11% Similarity=0.073 Sum_probs=62.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C--c----
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--P---- 166 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~--~---- 166 (405)
.++|||.|+||+|++|++++..|+..|.- +.+..++......... .+.+.. . ..++.+.. | +
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-----~~v~~~~~~~~~~~~~----~l~~~~-~-~~~~~~~~~Dl~d~~~~ 90 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYET-----YKIINFDALTYSGNLN----NVKSIQ-D-HPNYYFVKGEIQNGELL 90 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTT-----EEEEEEECCCTTCCGG----GGTTTT-T-CTTEEEEECCTTCHHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCC-----cEEEEEeccccccchh----hhhhhc-c-CCCeEEEEcCCCCHHHH
Confidence 45789999999999999999999987631 2221211111111111 111111 0 01232221 1 1
Q ss_pred ccccCC--CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 YELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ~eal~d--ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+++++ +|+||.+++..... ..+....+..|+.-...+.+.+.+.. . ..+|.++
T Consensus 91 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~~v~~S 148 (346)
T 4egb_A 91 EHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP-H-IKLVQVS 148 (346)
T ss_dssp HHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHST-T-SEEEEEE
T ss_pred HHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcC-C-CEEEEeC
Confidence 234555 99999987753211 12344567888888888988888852 3 3455554
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0014 Score=59.73 Aligned_cols=116 Identities=10% Similarity=0.105 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.++|.|+||+|.+|++++..|+..|.+. .|.+ .+++.+.++... ..... ....++.-..+..++++++|
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~---~V~~----~~r~~~~~~~~~--~~~~~-~~~~D~~d~~~~~~~~~~~d 86 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFS---KVTL----IGRRKLTFDEEA--YKNVN-QEVVDFEKLDDYASAFQGHD 86 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCS---EEEE----EESSCCCCCSGG--GGGCE-EEECCGGGGGGGGGGGSSCS
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCC---EEEE----EEcCCCCccccc--cCCce-EEecCcCCHHHHHHHhcCCC
Confidence 35799999999999999999999887531 2443 233333221110 00000 00000000012345677899
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||.++|... ++.+..+.+..|..-...+.+.+.+. ..+.||+++-
T Consensus 87 ~vi~~ag~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~iv~~SS 132 (242)
T 2bka_A 87 VGFCCLGTTR-GKAGAEGFVRVDRDYVLKSAELAKAG--GCKHFNLLSS 132 (242)
T ss_dssp EEEECCCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEEECCCccc-ccCCcccceeeeHHHHHHHHHHHHHC--CCCEEEEEcc
Confidence 9999877431 11122345667777777788877774 2346666664
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0015 Score=59.62 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c---Cccccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I---NPYELF 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~---~~~eal 170 (405)
++++|.|+||+|.+|++++..|+..+. + ..|.+ .+++.++++ ++.... .-+..- + ...+.+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~-g--~~V~~----~~r~~~~~~----~~~~~~----~~~~~D~~d~~~~~~~~ 67 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSD-K--FVAKG----LVRSAQGKE----KIGGEA----DVFIGDITDADSINPAF 67 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTT-T--CEEEE----EESCHHHHH----HTTCCT----TEEECCTTSHHHHHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCC-C--cEEEE----EEcCCCchh----hcCCCe----eEEEecCCCHHHHHHHH
Confidence 367999999999999999999998731 1 12433 344444332 121100 001111 1 123567
Q ss_pred CCCcEEEEeCCcCCC------------CCCc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 171 EDAEWALLIGAKPRG------------PGME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 171 ~dADiVIi~~g~~~k------------~g~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+++|+||.+++.... +... -......|......+.+.+.+.. -..+|+++
T Consensus 68 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~iv~~S 132 (253)
T 1xq6_A 68 QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG--VKHIVVVG 132 (253)
T ss_dssp TTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT--CSEEEEEE
T ss_pred cCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC--CCEEEEEc
Confidence 889999998764321 1100 01245677777888888887752 34555555
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00045 Score=66.66 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc--ccCCCCCceEEEeccccchhh--hHHHHHHHhhhhcCCCcceEEEe-cC----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQ--ALEGVAMELEDSLFPLLREVKIG-IN---- 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~--~~~~~d~~i~L~l~~~d~~~~--~l~g~a~DL~d~~~~~~~~v~i~-~~---- 165 (405)
.|++|.|+||+|+||++++..|+.. +. .|.+ .+++.. ..+ ...++.+ .++.+. .|
T Consensus 3 ~m~~vlVTGatG~iG~~l~~~L~~~~~g~-----~V~~----~~r~~~~~~~~-~~~~~~~------~~~~~~~~Dl~d~ 66 (348)
T 1oc2_A 3 QFKNIIVTGGAGFIGSNFVHYVYNNHPDV-----HVTV----LDKLTYAGNKA-NLEAILG------DRVELVVGDIADA 66 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTC-----EEEE----EECCCTTCCGG-GTGGGCS------SSEEEEECCTTCH
T ss_pred cCcEEEEeCCccHHHHHHHHHHHHhCCCC-----EEEE----EeCCCCCCChh-HHhhhcc------CCeEEEECCCCCH
Confidence 4789999999999999999999986 32 2332 222210 100 0111110 122221 11
Q ss_pred --cccccCCCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 --PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 --~~eal~dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..++++++|+||.+++..... ..+....+..|+.-...+.+.+.+.. +.+|.++
T Consensus 67 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~---~~~v~~S 124 (348)
T 1oc2_A 67 ELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD---IRFHHVS 124 (348)
T ss_dssp HHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT---CEEEEEE
T ss_pred HHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhC---CeEEEec
Confidence 235678899999988753210 01223456778888888888888762 3666665
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00079 Score=64.43 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=60.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-CCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~dADi 175 (405)
|||+|||| |.+|..++..|...+. +|.+ ++++.+.++ +.... .. ....+..+..+++ .++|+
T Consensus 3 mkI~iiGa-Ga~G~~~a~~L~~~g~-----~V~~----~~r~~~~~~-----~~~~~-g~-~~~~~~~~~~~~~~~~~D~ 65 (294)
T 3g17_A 3 LSVAIIGP-GAVGTTIAYELQQSLP-----HTTL----IGRHAKTIT-----YYTVP-HA-PAQDIVVKGYEDVTNTFDV 65 (294)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHCT-----TCEE----EESSCEEEE-----EESST-TS-CCEEEEEEEGGGCCSCEEE
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----EEeccCcEE-----EEecC-Ce-eccceecCchHhcCCCCCE
Confidence 69999995 9999999999998763 3555 344433322 11111 11 1123333455665 89999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
||++.. + .-+.++.+.++.+.+++..||.+.|-.+..
T Consensus 66 vilavk----~------------~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~ 102 (294)
T 3g17_A 66 IIIAVK----T------------HQLDAVIPHLTYLAHEDTLIILAQNGYGQL 102 (294)
T ss_dssp EEECSC----G------------GGHHHHGGGHHHHEEEEEEEEECCSSCCCG
T ss_pred EEEeCC----c------------cCHHHHHHHHHHhhCCCCEEEEeccCcccH
Confidence 998732 1 123334444555444678899999988654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.012 Score=54.18 Aligned_cols=116 Identities=13% Similarity=0.072 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (405)
+.+++.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++.... .++.+ ..| +.+
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 74 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGA-----AVVV----ADINAEAAEAVAKQIVADG----GTAISVAVDVSDPESAK 74 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHH
Confidence 457899999999999999999999875 2444 4666677776666664322 12221 111 221
Q ss_pred --------ccCCCcEEEEeCCcCC----CC--CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 --------LFEDAEWALLIGAKPR----GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~----k~--g~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|... .+ ..+. ...+..|..- .+.+.+.+.+. ..+.||+++--.
T Consensus 75 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~ 150 (253)
T 3qiv_A 75 AMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR--GGGAIVNQSSTA 150 (253)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECC--
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCCEEEEECCcc
Confidence 2237899999887521 11 1121 2345556544 56666666664 467888887654
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0015 Score=57.72 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=60.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC------cccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYEL 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~------~~ea 169 (405)
+||.|+||+|.+|++++..|+..+. ++.+ .+++.+.+.. +. ..++.+ ..| ..++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-----~V~~----~~r~~~~~~~----~~------~~~~~~~~~D~~~~~~~~~~ 64 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-----EVTV----LVRDSSRLPS----EG------PRPAHVVVGDVLQAADVDKT 64 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCGGGSCS----SS------CCCSEEEESCTTSHHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-----eEEE----EEeChhhccc----cc------CCceEEEEecCCCHHHHHHH
Confidence 6999999999999999999998763 2433 3444333210 00 011111 111 2356
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++++|+||.+++.... . +....|......+.+.+.+. .-..+|.++-
T Consensus 65 ~~~~d~vi~~a~~~~~--~---~~~~~n~~~~~~~~~~~~~~--~~~~~v~~Ss 111 (206)
T 1hdo_A 65 VAGQDAVIVLLGTRND--L---SPTTVMSEGARNIVAAMKAH--GVDKVVACTS 111 (206)
T ss_dssp HTTCSEEEECCCCTTC--C---SCCCHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HcCCCEEEECccCCCC--C---CccchHHHHHHHHHHHHHHh--CCCeEEEEee
Confidence 7889999998764322 1 11235667777777777775 2345666653
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00073 Score=63.32 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ec------Cccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~------~~~e 168 (405)
|++|.|+||+|.||++++..|+..+. .+.+ .+++..+..+ .++.+ .. ...+
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~-----~V~~----~~r~~~~~~~-------------~~~~~~~~Dl~d~~~~~~ 60 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE-----ILRL----ADLSPLDPAG-------------PNEECVQCDLADANAVNA 60 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE-----EEEE----EESSCCCCCC-------------TTEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----EEEE----EecCCccccC-------------CCCEEEEcCCCCHHHHHH
Confidence 56899999999999999999998764 2433 2333222110 01111 11 1235
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+++.|+||..++... ...-...+..|+.-...+.+.+.+. ..+.||+++
T Consensus 61 ~~~~~D~vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iv~~S 110 (267)
T 3rft_A 61 MVAGCDGIVHLGGISV--EKPFEQILQGNIIGLYNLYEAARAH--GQPRIVFAS 110 (267)
T ss_dssp HHTTCSEEEECCSCCS--CCCHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred HHcCCCEEEECCCCcC--cCCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEc
Confidence 6778999999887631 1223456778888888888888775 345666655
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0013 Score=61.44 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.||||+||| +|.+|..++..|...+. .+.+ .|++.++++..+.++ . +.++.+..+.++++|
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~-----~v~~----~~~~~~~~~~~~~~~-----g----~~~~~~~~~~~~~~D 62 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTPH-----ELII----SGSSLERSKEIAEQL-----A----LPYAMSHQDLIDQVD 62 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSSC-----EEEE----ECSSHHHHHHHHHHH-----T----CCBCSSHHHHHHTCS
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCCC-----eEEE----ECCCHHHHHHHHHHc-----C----CEeeCCHHHHHhcCC
Confidence 467999999 59999999999987652 3444 466666665443322 1 112345567788999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||++.
T Consensus 63 ~Vi~~v 68 (259)
T 2ahr_A 63 LVILGI 68 (259)
T ss_dssp EEEECS
T ss_pred EEEEEe
Confidence 999874
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0015 Score=61.51 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc-----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL----- 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea----- 169 (405)
++++|.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.... .-+..-..+.+.
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~~~~~~~~~~ 70 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD-----TVIG----TARRTEALDDLVAAYPDRA----EAISLDVTDGERIDVVA 70 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHCTTTE----EEEECCTTCHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhccCCc----eEEEeeCCCHHHHHHHH
Confidence 457899999999999999999999874 2443 4555566554443321110 001111112222
Q ss_pred ------cCCCcEEEEeCCcCC-CC--CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 ------FEDAEWALLIGAKPR-GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 ------l~dADiVIi~~g~~~-k~--g~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|... .+ ..+. ...+..|..- .+.+.+.+++. ..+.||+++-.
T Consensus 71 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~~~iv~~sS~ 139 (281)
T 3m1a_A 71 ADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER--GSGSVVNISSF 139 (281)
T ss_dssp HHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEEcCc
Confidence 227899999887532 11 1121 1245556544 66666666664 45777877753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00096 Score=53.72 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec----CcccccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI----NPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~----~~~eal~ 171 (405)
++||.|+|| |.+|..++..|...+.. ++.+ .+++.++++... +. .. ..+.... ...+.++
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~----~v~~----~~r~~~~~~~~~----~~--~~-~~~~~d~~~~~~~~~~~~ 68 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNY----SVTV----ADHDLAALAVLN----RM--GV-ATKQVDAKDEAGLAKALG 68 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSE----EEEE----EESCHHHHHHHH----TT--TC-EEEECCTTCHHHHHHHTT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCc----eEEE----EeCCHHHHHHHH----hC--CC-cEEEecCCCHHHHHHHHc
Confidence 579999997 99999999999987721 2443 466656554332 11 10 0011111 1235678
Q ss_pred CCcEEEEeCC
Q 015501 172 DAEWALLIGA 181 (405)
Q Consensus 172 dADiVIi~~g 181 (405)
++|+||.+.+
T Consensus 69 ~~d~vi~~~~ 78 (118)
T 3ic5_A 69 GFDAVISAAP 78 (118)
T ss_dssp TCSEEEECSC
T ss_pred CCCEEEECCC
Confidence 9999998864
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0066 Score=60.62 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh---hHHHHHHHhhhhcC-----CCcceEEEe-cC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSLF-----PLLREVKIG-IN 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~---~l~g~a~DL~d~~~-----~~~~~v~i~-~~ 165 (405)
++++|.|+||+|+||++++..|+..+. .|.+ .+++.+ .++.....+..... ....++.+. .|
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~----~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~D 138 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGYSH-----RIYC----FIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGD 138 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTTEE-----EEEE----EEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEEC
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcCCC-----EEEE----EECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCC
Confidence 467999999999999999999976553 2332 233322 22322222221100 000122221 11
Q ss_pred --c---ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 --P---YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 --~---~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+ .+++.++|+||.+++... ...+.......|+.-...+++.+.+ . ...+|.++
T Consensus 139 l~d~~~l~~~~~~d~Vih~A~~~~-~~~~~~~~~~~Nv~g~~~l~~aa~~-~--~~~~v~~S 196 (427)
T 4f6c_A 139 FECMDDVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-H--HARLIYVS 196 (427)
T ss_dssp C---CCCCCSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T--TCEEEEEE
T ss_pred CCCcccCCCcCCCCEEEECCcccC-CCCCHHHHHHHHHHHHHHHHHHHHh-c--CCcEEEEC
Confidence 1 115679999999887542 2233445677888888888888887 2 34555554
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0083 Score=57.98 Aligned_cols=115 Identities=14% Similarity=0.039 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch----hhhHHHHHHHhhhhcCCCcceEEEe-cC----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----LQALEGVAMELEDSLFPLLREVKIG-IN---- 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~----~~~l~g~a~DL~d~~~~~~~~v~i~-~~---- 165 (405)
+++||.|+||+|++|++++..|+..|. .|.+ .+++ .+.++.....+.... ..++.+. .|
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~ 93 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQ-----KVVG----LDNFATGHQRNLDEVRSLVSEKQ---WSNFKFIQGDIRNL 93 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCSSCCHHHHHHHHHHSCHHH---HTTEEEEECCTTSH
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCCccchhhHHHHhhhccccc---CCceEEEECCCCCH
Confidence 578999999999999999999998764 2433 2222 123332222111100 0122221 11
Q ss_pred --cccccCCCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 166 --PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 166 --~~eal~dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
..++++++|+||.+++....+ ..+....+..|+.-...+.+.+.+. .-..+|.++-
T Consensus 94 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~~v~~SS 153 (352)
T 1sb8_A 94 DDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA--KVQSFTYAAS 153 (352)
T ss_dssp HHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT--TCSEEEEEEE
T ss_pred HHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEecc
Confidence 234677999999987743210 0123345677888888888888774 2245665553
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.012 Score=53.53 Aligned_cols=117 Identities=19% Similarity=0.163 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~ea--- 169 (405)
+++|.|+||+|.+|.+++..|+..|. .+.+ + .+++.+.++....++.... .- -.. +..| +.+.
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~-----~v~~--~-~~r~~~~~~~~~~~~~~~~-~~--~~~~~~~D~~~~~~~~~ 69 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF-----ALAI--H-YGQNREKAEEVAEEARRRG-SP--LVAVLGANLLEAEAATA 69 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE--E-ESSCHHHHHHHHHHHHHTT-CS--CEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE--E-cCCCHHHHHHHHHHHHhcC-Cc--eEEEEeccCCCHHHHHH
Confidence 35899999999999999999998774 2433 1 1455555554544444321 10 011 2211 2221
Q ss_pred --------cCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 --------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+.+.|+||..+|...... .+ -...+..|..- .+.+.+.+.+. ..+.||+++-..
T Consensus 70 ~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~~sS~~ 141 (245)
T 2ph3_A 70 LVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA--RFGRIVNITSVV 141 (245)
T ss_dssp HHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCTH
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc--CCCEEEEEeChh
Confidence 347899999887543111 11 12334555444 55566666653 357888887653
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.001 Score=63.30 Aligned_cols=108 Identities=15% Similarity=0.238 Sum_probs=62.8
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c--
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P-- 166 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~-- 166 (405)
...++++|.|+||+|+||++++..|+..|. .|.+ .+++... .. + ++.+ ..| +
T Consensus 8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~-----~V~~----~~r~~~~-~~----l---------~~~~~~~Dl~d~~ 64 (321)
T 2pk3_A 8 HHHGSMRALITGVAGFVGKYLANHLTEQNV-----EVFG----TSRNNEA-KL----P---------NVEMISLDIMDSQ 64 (321)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCTTC-CC----T---------TEEEEECCTTCHH
T ss_pred cccCcceEEEECCCChHHHHHHHHHHHCCC-----EEEE----EecCCcc-cc----c---------eeeEEECCCCCHH
Confidence 345689999999999999999999998764 2433 2332221 10 1 1111 111 1
Q ss_pred --ccccCC--CcEEEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 --YELFED--AEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 --~eal~d--ADiVIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+++++ .|+||.+++.... ...+....+..|+.-...+.+.+.+.. ....+|.++-
T Consensus 65 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS 126 (321)
T 2pk3_A 65 RVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSN-LDCRILTIGS 126 (321)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT-CCCEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEcc
Confidence 234444 8999998775321 111334567788888888888886652 3456666663
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0027 Score=59.57 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=58.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--c---Cccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~---~~~eal 170 (405)
|||.|+||+|++|++++..|... +. .|.+ ..++.+++.. +... ...+... + ...+++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~-----~V~~----~~R~~~~~~~----~~~~----~v~~~~~D~~d~~~l~~~~ 63 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID-----HFHI----GVRNVEKVPD----DWRG----KVSVRQLDYFNQESMVEAF 63 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT-----TEEE----EESSGGGSCG----GGBT----TBEEEECCTTCHHHHHHHT
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC-----cEEE----EECCHHHHHH----hhhC----CCEEEEcCCCCHHHHHHHH
Confidence 58999999999999999998875 43 2443 2343333221 1110 0011111 1 124578
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+++|+||.+++... + ...|....+.+++.+++. +. ..||.++
T Consensus 64 ~~~d~vi~~a~~~~-~-------~~~~~~~~~~l~~aa~~~-gv-~~iv~~S 105 (289)
T 3e48_A 64 KGMDTVVFIPSIIH-P-------SFKRIPEVENLVYAAKQS-GV-AHIIFIG 105 (289)
T ss_dssp TTCSEEEECCCCCC-S-------HHHHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred hCCCEEEEeCCCCc-c-------chhhHHHHHHHHHHHHHc-CC-CEEEEEc
Confidence 89999999876421 1 134667777888888774 22 3455544
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00087 Score=62.44 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||.|+||+|++|++++..|+..+. .|.+ .+++.+.. +.........++.-.....++++++|+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 66 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAH-----EVRL----SDIVDLGA------AEAHEEIVACDLADAQAVHDLVKDCDG 66 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEE-----EEEE----CCSSCCCC------CCTTEEECCCCTTCHHHHHHHHTTCSE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCC-----EEEE----EeCCCccc------cCCCccEEEccCCCHHHHHHHHcCCCE
Confidence 35899999999999999999988763 2333 33332211 000000000000000012356778999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||.+++.. ...+....+..|..-...+.+.+.+. ....||.++
T Consensus 67 vi~~a~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~S 109 (267)
T 3ay3_A 67 IIHLGGVS--VERPWNDILQANIIGAYNLYEAARNL--GKPRIVFAS 109 (267)
T ss_dssp EEECCSCC--SCCCHHHHHHHTHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred EEECCcCC--CCCCHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEeC
Confidence 99987754 22233456678888888888888774 234566555
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.014 Score=53.52 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... . ++.. ..| +.+
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~ 76 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQQLG-G---QAFACRCDITSEQELS 76 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHHhC-C---ceEEEEcCCCCHHHHH
Confidence 347899999999999999999998774 2443 4566566665555554321 1 2221 111 222
Q ss_pred -cc-------CCCcEEEEeCCcCCC-C-CCc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -LF-------EDAEWALLIGAKPRG-P-GME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -al-------~dADiVIi~~g~~~k-~-g~~---r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+ .+.|+||..+|.... + ..+ -...+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 77 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 147 (255)
T 1fmc_A 77 ALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN--GGGVILTITSM 147 (255)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 22 279999998775321 1 112 12334555444 34444444443 35778877753
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.03 Score=46.08 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=41.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcc-----cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPY-----EL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~-----ea 169 (405)
.|||+|+|+ |.+|..++..|...+. ++.+ +|+++++++....++ .. .+... ..+. ..
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~-----~v~~----~d~~~~~~~~~~~~~-----~~--~~~~~d~~~~~~l~~~~ 66 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGH-----DIVL----IDIDKDICKKASAEI-----DA--LVINGDCTKIKTLEDAG 66 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHC-----SS--EEEESCTTSHHHHHHTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHhc-----Cc--EEEEcCCCCHHHHHHcC
Confidence 369999995 9999999999998663 3544 455555554332211 10 11111 1111 23
Q ss_pred cCCCcEEEEeCC
Q 015501 170 FEDAEWALLIGA 181 (405)
Q Consensus 170 l~dADiVIi~~g 181 (405)
+.++|+||++.+
T Consensus 67 ~~~~d~vi~~~~ 78 (140)
T 1lss_A 67 IEDADMYIAVTG 78 (140)
T ss_dssp TTTCSEEEECCS
T ss_pred cccCCEEEEeeC
Confidence 789999998743
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0027 Score=60.14 Aligned_cols=104 Identities=14% Similarity=0.092 Sum_probs=61.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c-----Cccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I-----NPYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~-----~~~eal 170 (405)
|||.|+||+|++|++++..|+..|. .|.. .+++.+..... .+. .+.+. . +..+++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~----~~~------~~~~~~~Dl~d~~~~~~~ 61 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY-----EVVV----VDNLSSGRREF----VNP------SAELHVRDLKDYSWGAGI 61 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECCCSSCCGGG----SCT------TSEEECCCTTSTTTTTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-----EEEE----EeCCCCCchhh----cCC------CceEEECccccHHHHhhc
Confidence 5899999999999999999998764 2433 23322211100 000 01111 0 123455
Q ss_pred CCCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 171 EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++ |+||.+++.+... ..+....+..|+.-...+.+.+.+.. . ..+|.++
T Consensus 62 ~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~iv~~S 112 (312)
T 3ko8_A 62 KG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-V-RTVVFAS 112 (312)
T ss_dssp CC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHT-C-CEEEEEE
T ss_pred CC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEeC
Confidence 56 9999988753211 12334556788888888888888752 2 3555555
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.002 Score=60.87 Aligned_cols=106 Identities=12% Similarity=-0.006 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c----Ccccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I----NPYEL 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~----~~~ea 169 (405)
.+++|.|+||+|++|++++..|+..+-. .|.. .+++.+.... .++.... . .+... . ...++
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~----~~R~~~~~~~--~~l~~~~--~--~~~~~D~~d~~~l~~~ 69 (299)
T 2wm3_A 4 DKKLVVVFGGTGAQGGSVARTLLEDGTF----KVRV----VTRNPRKKAA--KELRLQG--A--EVVQGDQDDQVIMELA 69 (299)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCSS----EEEE----EESCTTSHHH--HHHHHTT--C--EEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCc----eEEE----EEcCCCCHHH--HHHHHCC--C--EEEEecCCCHHHHHHH
Confidence 3579999999999999999999986511 2433 2344333221 1222111 0 11111 1 12357
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++++|.||.+++....+ ....|....+.+.+.+.+. +. ..+|..+
T Consensus 70 ~~~~d~vi~~a~~~~~~------~~~~~~~~~~~~~~aa~~~-gv-~~iv~~S 114 (299)
T 2wm3_A 70 LNGAYATFIVTNYWESC------SQEQEVKQGKLLADLARRL-GL-HYVVYSG 114 (299)
T ss_dssp HTTCSEEEECCCHHHHT------CHHHHHHHHHHHHHHHHHH-TC-SEEEECC
T ss_pred HhcCCEEEEeCCCCccc------cchHHHHHHHHHHHHHHHc-CC-CEEEEEc
Confidence 88999999886532100 1245566677777777764 22 3455544
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.04 Score=51.52 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~ea--- 169 (405)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....++.... ...++.+. .| +.+.
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~ 100 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGL-----KVVG----CARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILS 100 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECChHHHHHHHHHHHhcC--CCceEEEEEecCCCHHHHHH
Confidence 46899999999999999999999774 2444 4566666665555554321 11122221 11 2222
Q ss_pred --------cCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 --------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+.|+||..+|...... .+. ...+..|..- .+.+.+.+.+...+.+.||+++-.
T Consensus 101 ~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~ 173 (279)
T 1xg5_A 101 MFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM 173 (279)
T ss_dssp HHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcCh
Confidence 237899999887532111 111 2334555544 666677777642114777777743
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.034 Score=51.92 Aligned_cols=114 Identities=12% Similarity=0.062 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e---- 168 (405)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .++.+. .| +.+
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~ 97 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLKS-----KLVL----WDINKHGLEETAAKCKGLG----AKVHTFVVDCSNREDIYS 97 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EEcCHHHHHHHHHHHHhcC----CeEEEEEeeCCCHHHHHH
Confidence 46899999999999999999999874 2444 4555566665555554321 122221 11 222
Q ss_pred -------ccCCCcEEEEeCCcCCCCCC---c---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -------LFEDAEWALLIGAKPRGPGM---E---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k~g~---~---r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+.+.|+||..+|....... + -...+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 98 ~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 168 (272)
T 1yb1_A 98 SAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASA 168 (272)
T ss_dssp HHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred HHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEech
Confidence 12378999998875432111 1 11234455443 44455555553 45778877754
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=59.26 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC------cc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~------~~ 167 (405)
.|++|.|+||+|.+|.+++..|+..|-+ .|.+ .+++.+++.. +. . ..+.+. .| ..
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~----~V~~----~~R~~~~~~~----~~----~--~~~~~~~~Dl~d~~~~~ 83 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTI----KQTL----FARQPAKIHK----PY----P--TNSQIIMGDVLNHAALK 83 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTE----EEEE----EESSGGGSCS----SC----C--TTEEEEECCTTCHHHHH
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCc----eEEE----EEcChhhhcc----cc----c--CCcEEEEecCCCHHHHH
Confidence 3678999999999999999999987721 2433 3444333221 10 0 012211 11 23
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++++++|+||.+++.. ..+ ...+.+.+.+++. .-+.||+++-
T Consensus 84 ~~~~~~D~vv~~a~~~------~~~------~~~~~~~~~~~~~--~~~~iV~iSS 125 (236)
T 3qvo_A 84 QAMQGQDIVYANLTGE------DLD------IQANSVIAAMKAC--DVKRLIFVLS 125 (236)
T ss_dssp HHHTTCSEEEEECCST------THH------HHHHHHHHHHHHT--TCCEEEEECC
T ss_pred HHhcCCCEEEEcCCCC------chh------HHHHHHHHHHHHc--CCCEEEEEec
Confidence 5678999999876631 111 1234566666664 2356666664
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.017 Score=52.66 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccccc-
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYELF- 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~eal- 170 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ + .+++.+.++....++.+.. .++... .| +.+.+
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G~-----~V~~--~-~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 71 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-----NIVL--N-GSPASTSLDATAEEFKAAG----INVVVAKGDVKNPEDVE 71 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--E-ECTTCSHHHHHHHHHHHTT----CCEEEEESCTTSHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E-cCcCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHH
Confidence 346899999999999999999999874 2443 1 1334444544444443321 122211 11 22222
Q ss_pred ----------CCCcEEEEeCCcCCC-C-----CCchhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 171 ----------EDAEWALLIGAKPRG-P-----GMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 171 ----------~dADiVIi~~g~~~k-~-----g~~r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+.|+||..+|.... + ..+-...+..|..- .+.+.+.+.+. ..+.||+++-..
T Consensus 72 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~~ 144 (247)
T 2hq1_A 72 NMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ--KSGKIINITSIA 144 (247)
T ss_dssp HHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHH--TCEEEEEECC--
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcChh
Confidence 278999998875421 1 11122345556544 44444445443 457888877643
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.094 Score=45.80 Aligned_cols=134 Identities=11% Similarity=-0.013 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cC---cccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~---~~ea 169 (405)
.++|.|+|+ |.+|..++..|... +. ++.+ +|+++++++... + .. ..+... ++ ..++
T Consensus 39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~-----~V~v----id~~~~~~~~~~-~---~g----~~~~~gd~~~~~~l~~~ 100 (183)
T 3c85_A 39 HAQVLILGM-GRIGTGAYDELRARYGK-----ISLG----IEIREEAAQQHR-S---EG----RNVISGDATDPDFWERI 100 (183)
T ss_dssp TCSEEEECC-SHHHHHHHHHHHHHHCS-----CEEE----EESCHHHHHHHH-H---TT----CCEEECCTTCHHHHHTB
T ss_pred CCcEEEECC-CHHHHHHHHHHHhccCC-----eEEE----EECCHHHHHHHH-H---CC----CCEEEcCCCCHHHHHhc
Confidence 358999995 99999999999886 64 3544 466666554322 1 11 111111 11 1233
Q ss_pred --cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceeec
Q 015501 170 --FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247 (405)
Q Consensus 170 --l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~g 247 (405)
+.++|+||++.+.. ..|. .++..+++. +|+..++..+|-.+.. ..+.+. + . ..+...
T Consensus 101 ~~~~~ad~vi~~~~~~-----------~~~~----~~~~~~~~~-~~~~~ii~~~~~~~~~-~~l~~~-G-~--~~vi~p 159 (183)
T 3c85_A 101 LDTGHVKLVLLAMPHH-----------QGNQ----TALEQLQRR-NYKGQIAAIAEYPDQL-EGLLES-G-V--DAAFNI 159 (183)
T ss_dssp CSCCCCCEEEECCSSH-----------HHHH----HHHHHHHHT-TCCSEEEEEESSHHHH-HHHHHH-T-C--SEEEEH
T ss_pred cCCCCCCEEEEeCCCh-----------HHHH----HHHHHHHHH-CCCCEEEEEECCHHHH-HHHHHc-C-C--CEEEch
Confidence 78999999864310 2232 233455565 3777766666543322 233333 2 2 223233
Q ss_pred chhhHHHHHHHHHHHhCCCCC
Q 015501 248 TRLDENRAKCQLALKAGVFYD 268 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~ 268 (405)
...-..++...+-..++.+..
T Consensus 160 ~~~~a~~l~~~~~~~~~~~~~ 180 (183)
T 3c85_A 160 YSEAGSGFARHVCKQLEPQFT 180 (183)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCccc
Confidence 333344556666666665544
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0054 Score=59.45 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccC--
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFE-- 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~-- 171 (405)
.++|.|+||+|+||++++..|+..|.. .|.+ ++++..... ..++.+. .. ...+.. ...+.++
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~----~V~~----~~r~~~~~~--~~~~~~~--~~--~~d~~~~~~~~~~~~~~ 111 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGIT----DILV----VDNLKDGTK--FVNLVDL--NI--ADYMDKEDFLIQIMAGE 111 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCC----CEEE----EECCSSGGG--GGGTTTS--CC--SEEEEHHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCc----EEEE----EecCCCcch--hhcccCc--eE--eeecCcHHHHHHHHhhc
Confidence 468999999999999999999987621 2433 222211110 0011110 01 111211 1123333
Q ss_pred ---CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 ---DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 ---dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||.+++.......+....+..|+.-...+.+.+.+. +. .+|.++-
T Consensus 112 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~-~~--r~V~~SS 163 (357)
T 2x6t_A 112 EFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI--PFLYASS 163 (357)
T ss_dssp CCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC--CEEEEEE
T ss_pred ccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEcc
Confidence 5999999887543222344456788888888898888875 23 5665553
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.025 Score=52.02 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .++.+. .| +.+
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~ 78 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA-----RVII----ADLDEAMATKAVEDLRMEG----HDVSSVVMDVTNTESVQ 78 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEEecCCCHHHHH
Confidence 346899999999999999999999774 2444 4555566655555554321 122221 11 222
Q ss_pred -cc-------CCCcEEEEeCCcCC--CCC--Cch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -LF-------EDAEWALLIGAKPR--GPG--MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -al-------~dADiVIi~~g~~~--k~g--~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+ ...|+||..+|... .+- .+. ...+..|..- ++.+.+.+.+. ..+.|++++-.
T Consensus 79 ~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~~sS~ 151 (260)
T 3awd_A 79 NAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQ--KQGVIVAIGSM 151 (260)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc--CCCEEEEEecc
Confidence 22 36899999887542 111 111 2234455443 33344444443 45777777754
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0077 Score=56.68 Aligned_cols=111 Identities=16% Similarity=0.103 Sum_probs=63.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC-----C
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-----D 172 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-----d 172 (405)
||.|+||+|++|++++..|+..|.. .+.+ .++...... ..++... ....++.-.....+.++ +
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~----~V~~----~~r~~~~~~--~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~ 68 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGIT----DILV----VDNLKDGTK--FVNLVDL--NIADYMDKEDFLIQIMAGEEFGD 68 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCC----CEEE----EECCSSGGG--GHHHHTS--CCSEEEEHHHHHHHHHTTCCCSS
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCc----EEEE----EccCCCCch--hhhcCcc--eeccccccHHHHHHHHhccccCC
Confidence 5899999999999999999987621 2433 222211110 0111111 11111111111223444 4
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+|+||.+++.......+....+..|......+.+.+.+.. . .+|.++-
T Consensus 69 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~--~~v~~SS 116 (310)
T 1eq2_A 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I--PFLYASS 116 (310)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-C--CEEEEEE
T ss_pred CcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEee
Confidence 9999998775432223444567788888888998888863 3 6666553
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0073 Score=56.16 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc----c--
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----L-- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----a-- 169 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... .-+..-..+.+ .
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~D~~~~~~v~~~~~ 74 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGA-----TVAI----ADIDIERARQAAAEIGPAA----YAVQMDVTRQDSIDAAIA 74 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTE----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCCc----eEEEeeCCCHHHHHHHHH
Confidence 46899999999999999999999875 2444 4666666666655543211 00111111111 2
Q ss_pred -----cCCCcEEEEeCCcCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 -----FEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 -----l~dADiVIi~~g~~~k-~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. +..+.||+++-..
T Consensus 75 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~~ 144 (259)
T 4e6p_A 75 ATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQ-GRGGKIINMASQA 144 (259)
T ss_dssp HHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCGG
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEECChh
Confidence 2379999998875321 11 111 123445543 445555566554 2468888887543
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0048 Score=58.50 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=51.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (405)
+||.|+||+|++|++++..|+..|. .|.+ .+++.+.-.-+..|+.+. ....++++ ++|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~Dl~d~-----------~~~~~~~~~~~~d 62 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNW-----HAVG----CGFRRARPKFEQVNLLDS-----------NAVHHIIHDFQPH 62 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----EC-----------------------------CHHHHHHHCCS
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCC-----eEEE----EccCCCCCCeEEecCCCH-----------HHHHHHHHhhCCC
Confidence 6899999999999999999998763 2433 233222100111232221 12334555 489
Q ss_pred EEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||.+++..... ..+....+..|+.-...+.+.+.+. + +.+|.++-
T Consensus 63 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~~~v~~SS 110 (315)
T 2ydy_A 63 VIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-G--AFLIYISS 110 (315)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHHH-T--CEEEEEEE
T ss_pred EEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEch
Confidence 999987753211 1233345677888888888888775 2 36666653
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00093 Score=64.43 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c----c
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----Y 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~----~ 167 (405)
+|+||.|+||+|++|++++..|+..|. .|.+ .+++..... ..+.+ + .++.+ ..| + .
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~---~~l~~----~-~~~~~~~~Dl~d~~~~~ 82 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERGD-----KVVG----IDNFATGRR---EHLKD----H-PNLTFVEGSIADHALVN 82 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCSSCCG---GGSCC----C-TTEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE----EECCCccch---hhHhh----c-CCceEEEEeCCCHHHHH
Confidence 478999999999999999999998763 2433 233211110 00110 0 11221 111 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~d--ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+++++ +|+||.+++.......+..+ +..|+.-...+.+.+.+. .-..||.++-
T Consensus 83 ~~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~--~~~~iV~~SS 137 (333)
T 2q1w_A 83 QLIGDLQPDAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKN--NVGRFVYFQT 137 (333)
T ss_dssp HHHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHT--TCSEEEEEEE
T ss_pred HHHhccCCcEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHh--CCCEEEEECc
Confidence 34556 99999987754321122222 677888888888888774 2345666553
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.001 Score=63.63 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc----ccccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~----~eal~ 171 (405)
||||.|+||+|++|++++..|+..+. .|.+ .+++..... ..+.. .. .-+..-..+ .++++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~---~~~~~---~~-~~~~~D~~~~~~~~~~~~ 64 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGL-----SVVV----VDNLQTGHE---DAITE---GA-KFYNGDLRDKAFLRDVFT 64 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCSSCCG---GGSCT---TS-EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----EEEE----EeCCCcCch---hhcCC---Cc-EEEECCCCCHHHHHHHHh
Confidence 67999999999999999999998763 2433 222211110 01110 00 001110111 23455
Q ss_pred --CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 --DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 --dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||.+++..... ..+....+..|+.-...+.+.+.+. .-..+|.++-
T Consensus 65 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~~v~~Ss 118 (330)
T 2c20_A 65 QENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF--KVDKFIFSST 118 (330)
T ss_dssp HSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred hcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc--CCCEEEEeCC
Confidence 899999987743210 0123345677888888888888774 2345666664
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.032 Score=52.37 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.++++..+.++.+.. . ++.. ..| +.+
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 70 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGA-----KILL----GARRQARIEAIATEIRDAG-G---TALAQVLDVTDRHSVAA 70 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHTT-C---EEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEcCCCCHHHHHH
Confidence 46899999999999999999999875 2444 4667777777776665432 1 2211 111 221
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -------LFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k~g---~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|...... .+.. ..+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 71 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~ 141 (264)
T 3tfo_A 71 FAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ--RSGQIINIGSI 141 (264)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEEcCH
Confidence 2337899999887542111 1111 23444533 345555666653 46788887754
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0092 Score=56.34 Aligned_cols=110 Identities=16% Similarity=0.049 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||.|+||+|++|++++..|+..+. .|.. .+++.....+....+.+.. .. ..+. -...++.++|+
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~-~~~~---~~~~Dl~~~d~ 72 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGE-----EVTV----LDDLRVPPMIPPEGTGKFL-EK-PVLE---LEERDLSDVRL 72 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----CEEE----ECCCSSCCSSCCTTSSEEE-CS-CGGG---CCHHHHTTEEE
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCC-----EEEE----EecCCcccccchhhhhhhc-cC-CCee---EEeCccccCCE
Confidence 67999999999999999999998764 2433 2332220000000011100 00 0011 11234448999
Q ss_pred EEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
||.+++.... ...+..+... |..-...+.+.+.+.. . ..+|.++
T Consensus 73 vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~-v-~~~v~~S 118 (321)
T 3vps_A 73 VYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVG-V-PKVVVGS 118 (321)
T ss_dssp EEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHT-C-CEEEEEE
T ss_pred EEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcC-C-CeEEEec
Confidence 9998764321 0112223445 9888999999888863 2 3555554
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.022 Score=52.98 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea--- 169 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.... + ..++.. ..| +.+.
T Consensus 13 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~v~~ 81 (267)
T 1iy8_A 13 DRVVLITGGGSGLGRATAVRLAAEGA-----KLSL----VDVSSEGLEASKAAVLETA-P-DAEVLTTVADVSDEAQVEA 81 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHC-T-TCCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhc-C-CceEEEEEccCCCHHHHHH
Confidence 46899999999999999999999874 2444 4566666665555554321 0 012221 111 2222
Q ss_pred --------cCCCcEEEEeCCcCCC--CC--Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 --------FEDAEWALLIGAKPRG--PG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k--~g--~~r---~~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|.... +- .+. ...+..|. .+.+.+.+.+.+. ..+.||+++-.
T Consensus 82 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 153 (267)
T 1iy8_A 82 YVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTASV 153 (267)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcch
Confidence 2268999998875432 11 111 12344454 3445666666654 35777777754
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.015 Score=54.23 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=41.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---CcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---~~~eal~d 172 (405)
||||.|+|| |++|++++..|+..|. .|.. .+++.+.+.... .. .+.+.. .+.+ +++
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~----~~------~~~~~~~D~~d~~-~~~ 63 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGW-----RIIG----TSRNPDQMEAIR----AS------GAEPLLWPGEEPS-LDG 63 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTC-----EEEE----EESCGGGHHHHH----HT------TEEEEESSSSCCC-CTT
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EEcChhhhhhHh----hC------CCeEEEecccccc-cCC
Confidence 479999997 9999999999998764 2433 344444433221 11 111111 1233 889
Q ss_pred CcEEEEeCCc
Q 015501 173 AEWALLIGAK 182 (405)
Q Consensus 173 ADiVIi~~g~ 182 (405)
+|+||.+++.
T Consensus 64 ~d~vi~~a~~ 73 (286)
T 3ius_A 64 VTHLLISTAP 73 (286)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCc
Confidence 9999998764
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.03 Score=50.83 Aligned_cols=46 Identities=33% Similarity=0.376 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
++++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++..+.++.
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 47 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-----ALAL----GARSVDRLEKIAHELM 47 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 56899999999999999999999875 2444 4666677776666664
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0061 Score=59.99 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---- 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---- 171 (405)
++||+||| .|.+|.+++..|...|. +|.+ +|++.+.++. +.++ .. ....+..++++
T Consensus 8 ~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~----~dr~~~~~~~-a~~~-----G~----~~~~~~~e~~~~a~~ 67 (341)
T 3ktd_A 8 SRPVCILG-LGLIGGSLLRDLHAANH-----SVFG----YNRSRSGAKS-AVDE-----GF----DVSADLEATLQRAAA 67 (341)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECSCHHHHHH-HHHT-----TC----CEESCHHHHHHHHHH
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHH-HHHc-----CC----eeeCCHHHHHHhccc
Confidence 57999999 59999999999998763 3554 5666665542 2221 11 22344455554
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||+||++.. ...+.++.+.+..+ .++++|+.++.
T Consensus 68 ~aDlVilavP----------------~~~~~~vl~~l~~~-~~~~iv~Dv~S 102 (341)
T 3ktd_A 68 EDALIVLAVP----------------MTAIDSLLDAVHTH-APNNGFTDVVS 102 (341)
T ss_dssp TTCEEEECSC----------------HHHHHHHHHHHHHH-CTTCCEEECCS
T ss_pred CCCEEEEeCC----------------HHHHHHHHHHHHcc-CCCCEEEEcCC
Confidence 5799998732 12344444555555 47887777664
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0057 Score=58.83 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.||++|| .|.+|..++..|+..|. ++.. .|++.++++. |.+. ..+...+..|+++++|+|
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~-----~V~v----~dr~~~~~~~----l~~~------G~~~~~s~~e~~~~~dvv 65 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGY-----ELVV----WNRTASKAEP----LTKL------GATVVENAIDAITPGGIV 65 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE----C-------CT----TTTT------TCEECSSGGGGCCTTCEE
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHH----HHHc------CCeEeCCHHHHHhcCCce
Confidence 3899999 69999999999999875 3443 5666555432 2211 234456678899999999
Q ss_pred EEe
Q 015501 177 LLI 179 (405)
Q Consensus 177 Ii~ 179 (405)
|++
T Consensus 66 i~~ 68 (297)
T 4gbj_A 66 FSV 68 (297)
T ss_dssp EEC
T ss_pred eee
Confidence 987
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0092 Score=59.12 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=43.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh----hhcCC-CcceEEEecCcc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE----DSLFP-LLREVKIGINPY 167 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~----d~~~~-~~~~v~i~~~~~ 167 (405)
|.+++||+|+||+|.+|..+...|...+. +.|..+....+..+. ..+.. +...+ ...+..+...+.
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S~~saGk~---~~~~~p~~~~~~~~~~~~~~~v~~~~~ 74 (359)
T 4dpl_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAGKGSVGKP---YGEVVRWQTVGQVPKEIADMEIKPTDP 74 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEESTTTTSB---HHHHCCCCSSSCCCHHHHTCBCEECCG
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEECchhcCCC---hhHhcccccccccccccccceEEeCCH
Confidence 44578999999999999999997766543 344444333321111 11110 00000 001222322345
Q ss_pred cccCCCcEEEEeCC
Q 015501 168 ELFEDAEWALLIGA 181 (405)
Q Consensus 168 eal~dADiVIi~~g 181 (405)
+++.++|+||++.+
T Consensus 75 ~~~~~vDvvf~a~p 88 (359)
T 4dpl_A 75 KLMDDVDIIFSPLP 88 (359)
T ss_dssp GGCTTCCEEEECCC
T ss_pred HHhcCCCEEEECCC
Confidence 67899999998744
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0092 Score=59.12 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=43.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh----hhcCC-CcceEEEecCcc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE----DSLFP-LLREVKIGINPY 167 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~----d~~~~-~~~~v~i~~~~~ 167 (405)
|.+++||+|+||+|.+|..+...|...+. +.|..+....+..+. ..+.. +...+ ...+..+...+.
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S~~saGk~---~~~~~p~~~~~~~~~~~~~~~v~~~~~ 74 (359)
T 4dpk_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAGKGSVGKP---YGEVVRWQTVGQVPKEIADMEIKPTDP 74 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEESTTTTSB---HHHHCCCCSSSCCCHHHHTCBCEECCG
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEECchhcCCC---hhHhcccccccccccccccceEEeCCH
Confidence 44578999999999999999997766543 344444333321111 11110 00000 001222322345
Q ss_pred cccCCCcEEEEeCC
Q 015501 168 ELFEDAEWALLIGA 181 (405)
Q Consensus 168 eal~dADiVIi~~g 181 (405)
+++.++|+||++.+
T Consensus 75 ~~~~~vDvvf~a~p 88 (359)
T 4dpk_A 75 KLMDDVDIIFSPLP 88 (359)
T ss_dssp GGCTTCCEEEECCC
T ss_pred HHhcCCCEEEECCC
Confidence 67899999998744
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0012 Score=63.32 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh--hhHHHHHHHhhhhcCCCcceEEEe-cC--c----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIG-IN--P---- 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~--~~l~g~a~DL~d~~~~~~~~v~i~-~~--~---- 166 (405)
.|||.|+||+|+||++++..|+..+. + ..+.. .++.. ...+.. .++.+ ..++.+. .| +
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~-~--~~V~~----~~r~~~~~~~~~~-~~~~~-----~~~~~~~~~Dl~d~~~~ 69 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHP-D--WEVIN----IDKLGYGSNPANL-KDLED-----DPRYTFVKGDVADYELV 69 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCT-T--CEEEE----EECCCTTCCGGGG-TTTTT-----CTTEEEEECCTTCHHHH
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCC-C--CEEEE----EecCcccCchhHH-hhhcc-----CCceEEEEcCCCCHHHH
Confidence 36899999999999999999998651 0 12332 22211 111110 11111 1122221 11 2
Q ss_pred ccccCCCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+++.++|+||.+++..... ..+....+..|+.-...+.+.+.+. +..+.||.++
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~S 126 (336)
T 2hun_A 70 KELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE-NPEVRFVHVS 126 (336)
T ss_dssp HHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred HHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 24457899999988753200 0122346778888888888888886 3445666666
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0085 Score=55.88 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc----cccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----ELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~----eal~ 171 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++..+.++.+.. .-+..-..+. +.++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~D~~~~~~v~~~~~ 73 (260)
T 1nff_A 7 GKVALVSGGARGMGASHVRAMVAEGA-----KVVF----GDILDEEGKAMAAELADAA----RYVHLDVTQPAQWKAAVD 73 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHTGGGE----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhhcCc----eEEEecCCCHHHHHHHHH
Confidence 46899999999999999999999875 2444 4555566655444443211 0011101111 2233
Q ss_pred -------CCcEEEEeCCcCCC-C--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 172 -------DAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 172 -------dADiVIi~~g~~~k-~--g~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 74 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 141 (260)
T 1nff_A 74 TAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISSI 141 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEeeh
Confidence 79999998875421 1 1111 123455543 335566666654 35778887754
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0071 Score=59.01 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=57.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch--hhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
|||.|+||+|++|++++..|+..+.. ++. . .|++ .+. ..++++++|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~----~v~--~--~d~~~d~~~------------------------l~~~~~~~d 48 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDH----HIF--E--VHRQTKEEE------------------------LESALLKAD 48 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC----EEE--E--CCTTCCHHH------------------------HHHHHHHCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC----EEE--E--ECCCCCHHH------------------------HHHHhccCC
Confidence 68999999999999999999987642 132 2 2331 111 123334689
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+||.+++.... .+..+....|......+++.+++.. ....+|.++
T Consensus 49 ~Vih~a~~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~S 93 (369)
T 3st7_A 49 FIVHLAGVNRP--EHDKEFSLGNVSYLDHVLDILTRNT-KKPAILLSS 93 (369)
T ss_dssp EEEECCCSBCT--TCSTTCSSSCCBHHHHHHHHHTTCS-SCCEEEEEE
T ss_pred EEEECCcCCCC--CCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeC
Confidence 99988765431 1223344567777777888777752 444566555
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.004 Score=59.07 Aligned_cols=112 Identities=9% Similarity=-0.013 Sum_probs=60.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccc-cchh-hhHHHHHHHhhhhcCCCcceEEEe-------cCcc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSL-QALEGVAMELEDSLFPLLREVKIG-------INPY 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~-d~~~-~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~ 167 (405)
+||.|+||+|+||++++..|+..|. .+.. +.. +... +.+... .++... ..++.+. ....
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~~r~~~~~~~~~~~~-~~~~~~----~~~~~~~~~Dl~d~~~~~ 69 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGY-----SVNT--TIRADPERKRDVSFL-TNLPGA----SEKLHFFNADLSNPDSFA 69 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--ECCCC----CCCHHH-HTSTTH----HHHEEECCCCTTCGGGGH
T ss_pred CEEEEECChhHHHHHHHHHHHHCCC-----EEEE--EEeCCccchhHHHHH-Hhhhcc----CCceEEEecCCCCHHHHH
Confidence 5899999999999999999998764 2432 111 1100 111111 111100 0011111 1123
Q ss_pred cccCCCcEEEEeCCcCCCCCC-c-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 168 ELFEDAEWALLIGAKPRGPGM-E-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~-~-r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++++++|+||.+++.. .... + ..+.+..|+.-...+.+.+.+.. .-..||.++
T Consensus 70 ~~~~~~d~vih~A~~~-~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~-~~~~iV~~S 124 (322)
T 2p4h_X 70 AAIEGCVGIFHTASPI-DFAVSEPEEIVTKRTVDGALGILKACVNSK-TVKRFIYTS 124 (322)
T ss_dssp HHHTTCSEEEECCCCC---------CHHHHHHHHHHHHHHHHHTTCS-SCCEEEEEE
T ss_pred HHHcCCCEEEEcCCcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEec
Confidence 5678999999987532 1111 1 12367788888888888877641 123566555
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0022 Score=60.26 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--C
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--d 172 (405)
+|+||.|+||+|++|++++..|+..+.... ..... ++. ...|+.|.. ...++++ +
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~---~~~~~--~~~-------~~~D~~d~~-----------~~~~~~~~~~ 61 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAGLPG---EDWVF--VSS-------KDADLTDTA-----------QTRALFEKVQ 61 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTCCTT---CEEEE--CCT-------TTCCTTSHH-----------HHHHHHHHSC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCCccc---ccccc--cCc-------eecccCCHH-----------HHHHHHhhcC
Confidence 478999999999999999999998775211 11111 000 011111110 0112222 4
Q ss_pred CcEEEEeCCcCCC---CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 173 AEWALLIGAKPRG---PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 173 ADiVIi~~g~~~k---~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+|+||.+++.... ...+..+.+..|+.-...+.+.+.+.. .. .+|.++-
T Consensus 62 ~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~-~~v~~SS 113 (319)
T 4b8w_A 62 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG-AR-KVVSCLS 113 (319)
T ss_dssp CSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CS-EEEEECC
T ss_pred CCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcC-CC-eEEEEcc
Confidence 8999998775321 112334567888888888998888752 32 5555553
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.032 Score=50.89 Aligned_cols=114 Identities=10% Similarity=-0.057 Sum_probs=64.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc----c
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE----L 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e----a 169 (405)
++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++... ...++.+. .| +.+ .
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~ 70 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGD-----RVAA----LDLSAETLEETARTHWHA---YADKVLRVRADVADEGDVNAA 70 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHSTT---TGGGEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHH
Confidence 5799999999999999999999874 2444 455556665555444111 11122221 11 222 2
Q ss_pred c-------CCCcEEEEeCCcCCCCC------Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 F-------EDAEWALLIGAKPRGPG------ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 l-------~dADiVIi~~g~~~k~g------~~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+ .+.|+||..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 71 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 143 (250)
T 2cfc_A 71 IAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ--GAGVIVNIASV 143 (250)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEECCh
Confidence 2 27899999877532111 11 1123444543 334555555553 35778877754
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0019 Score=60.50 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (405)
|||.|+||+|++|++++..|+..|. .|.. .++. ..|+.|.. ...++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~-------~~D~~d~~-----------~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEY-----DIYP----FDKK-------LLDITNIS-----------QVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTE-----EEEE----ECTT-------TSCTTCHH-----------HHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCC-----EEEE----eccc-------ccCCCCHH-----------HHHHHHHhcCCC
Confidence 3899999999999999999988764 2332 2221 01222111 1123333 689
Q ss_pred EEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 175 iVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+||.+++..... ..+.......|+.-...+.+.+.+.. . ++|.++
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~v~~S 105 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG-A--KLVYIS 105 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHT-C--EEEEEE
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEc
Confidence 999987754211 12344567788888888888888863 3 566555
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.027 Score=57.11 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC----------CcceEEEecC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGIN 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~----------~~~~v~i~~~ 165 (405)
-.|+.||| +|.||..+|..|+..|. ++.. .|+++++.+.....-.....+ ...++..+++
T Consensus 11 ~~~~~ViG-lGyvGlp~A~~La~~G~-----~V~~----~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd 80 (431)
T 3ojo_A 11 GSKLTVVG-LGYIGLPTSIMFAKHGV-----DVLG----VDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT 80 (431)
T ss_dssp -CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS
T ss_pred CCccEEEe-eCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc
Confidence 57999999 59999999999999875 3443 466666665443210000000 0134666654
Q ss_pred cccccCCCcEEEEeCCcCC
Q 015501 166 PYELFEDAEWALLIGAKPR 184 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~ 184 (405)
+++||+||++.+.|.
T Consensus 81 ----~~~aDvvii~VpTp~ 95 (431)
T 3ojo_A 81 ----PEASDVFIIAVPTPN 95 (431)
T ss_dssp ----CCCCSEEEECCCCCB
T ss_pred ----hhhCCEEEEEeCCCc
Confidence 458999999866553
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0051 Score=58.43 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dA 173 (405)
+|||.|+||+|++|++++..|+..+. .+.+ .++.. ..|+.+.. ...++++ ++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~v~~----~~r~~------~~D~~d~~-----------~~~~~~~~~~~ 56 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGD-----VELV----LRTRD------ELNLLDSR-----------AVHDFFASERI 56 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-----EEEE----CCCTT------TCCTTCHH-----------HHHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----eEEE----EecCc------cCCccCHH-----------HHHHHHHhcCC
Confidence 46999999999999999999998764 2332 22211 01222111 1123444 89
Q ss_pred cEEEEeCCcCCCC---CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 174 EWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 174 DiVIi~~g~~~k~---g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|+||.+++..... ..+..+.+..|......+.+.+.+. .-..+|.++-
T Consensus 57 d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS 107 (321)
T 1e6u_A 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN--DVNKLLFLGS 107 (321)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcc
Confidence 9999987753211 0123345677888888888888874 2236666664
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.002 Score=63.25 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcc-cCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C------c
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGE-VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------P 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~-~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~------~ 166 (405)
++|||.|+||+|++|++++..|+..+ . .|.+ .+++..... ..+.. ..++.+.. | .
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-----~V~~----~~r~~~~~~---~~l~~-----~~~v~~~~~Dl~d~~~l 93 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVN-----QVHV----VDNLLSAEK---INVPD-----HPAVRFSETSITDDALL 93 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCS-----EEEE----ECCCTTCCG---GGSCC-----CTTEEEECSCTTCHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCc-----eEEE----EECCCCCch---hhccC-----CCceEEEECCCCCHHHH
Confidence 46799999999999999999999876 3 2433 233222110 00100 01222211 1 2
Q ss_pred ccccCCCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.++++++|+||.+++..... ..+....+..|+.....+.+.+.+.. .-..+|.++-
T Consensus 94 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~~V~~SS 151 (377)
T 2q1s_A 94 ASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFK-RLKKVVYSAA 151 (377)
T ss_dssp HHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCS-SCCEEEEEEE
T ss_pred HHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCC
Confidence 34677999999987743210 01233456778888888888877641 1235555554
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.013 Score=57.55 Aligned_cols=118 Identities=11% Similarity=0.126 Sum_probs=63.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhH----------------HHHHHHhhhhcCCC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL----------------EGVAMELEDSLFPL 156 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l----------------~g~a~DL~d~~~~~ 156 (405)
.+++++|.|+||+|+||++++..|+..|. .|.+ .++..... .....++.+.. .
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~- 76 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKNY-----EVCI----VDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-G- 76 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-C-
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCCC-----eEEE----EEecCccccccccccccccccchhhhhhhhHhhcc-C-
Confidence 35689999999999999999999998764 2433 22211110 00111111111 1
Q ss_pred cceEEE-ecC--c----ccccCC--CcEEEEeCCcCCCC--CCch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 157 LREVKI-GIN--P----YELFED--AEWALLIGAKPRGP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 157 ~~~v~i-~~~--~----~eal~d--ADiVIi~~g~~~k~--g~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.++.+ ..| + .+++++ +|+||.+++....+ ..+. ...+..|+.-...+.+.+.+.. ....+|.++
T Consensus 77 -~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~~~V~~S 154 (404)
T 1i24_A 77 -KSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLG 154 (404)
T ss_dssp -CCCEEEESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEC
T ss_pred -CceEEEECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC-CCcEEEEeC
Confidence 11211 122 2 234555 99999988753211 0111 1255678888888888888763 334677766
Q ss_pred C
Q 015501 223 N 223 (405)
Q Consensus 223 N 223 (405)
-
T Consensus 155 S 155 (404)
T 1i24_A 155 T 155 (404)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.041 Score=51.76 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=66.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc-
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE- 168 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e- 168 (405)
|.+.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++... .| +.+
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~ 87 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI-----AVYG----CARDAKNVSAAVDGLRAAG----HDVDGSSCDVTSTDE 87 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT----CCEEEEECCTTCHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHH
Confidence 34457899999999999999999999875 2444 4666677776666665422 122221 11 222
Q ss_pred ----------ccCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHHHHHHHHH------HHhhcCCCeEEEEeCCch
Q 015501 169 ----------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKA------LNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 ----------al~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i~~~i~~~------i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|...... .+. ...+..|..-...+.+. +.+. ..+.||+++-..
T Consensus 88 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--~~g~iV~isS~~ 164 (279)
T 3sju_A 88 VHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREA--GWGRIVNIASTG 164 (279)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHH--TCEEEEEECCGG
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhc--CCcEEEEECChh
Confidence 1236799999887542111 111 12345554433333333 3332 457888887543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.018 Score=52.45 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.... + .++.. ..| +.+
T Consensus 7 ~~~vlVtGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~ 74 (248)
T 2pnf_A 7 GKVSLVTGSTRGIGRAIAEKLASAGS-----TVII----TGTSGERAKAVAEEIANKY-G--VKAHGVEMNLLSEESINK 74 (248)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHHHhhc-C--CceEEEEccCCCHHHHHH
Confidence 46899999999999999999998774 2444 4556566655554443311 1 11221 111 222
Q ss_pred cc-------CCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 LF-------EDAEWALLIGAKPRGPG---ME---RAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 al-------~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i~----~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++ .+.|+||..+|...... .+ -...+..|..-. +.+.+.+.+. ..+.||+++-
T Consensus 75 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS 144 (248)
T 2pnf_A 75 AFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ--RWGRIVNISS 144 (248)
T ss_dssp HHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 22 37999999887543211 11 123445554443 4444555543 3577887774
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.034 Score=51.02 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEE-ecC--cccc--
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea-- 169 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .++ +.++++..+.++.... .++.. ..| +.++
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 70 (246)
T 2uvd_A 4 GKVALVTGASRGIGRAIAIDLAKQGA-----NVVV----NYAGNEQKANEVVDEIKKLG----SDAIAVRADVANAEDVT 70 (246)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHH
Confidence 46899999999999999999999874 2443 344 4555555555554321 11221 111 2222
Q ss_pred ---------cCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 ---------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 ---------l~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+...|++|..+|...... .+. ...+..|..- .+.+.+.+.+. ..+.||+++--.
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~ 143 (246)
T 2uvd_A 71 NMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQ--RHGRIVNIASVV 143 (246)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCTH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECCHH
Confidence 237899999887643211 111 1234555443 55556666653 357888887543
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0097 Score=54.30 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=58.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH-HHHHHhhhhcCCCcceEEEecCccccc-CCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~~~~~eal-~dA 173 (405)
|++|.|+||+|.+|++++..|+..|. .|.+ .+++.+.++ .+..|+.+.. ... ...+.+ .+.
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~D~~~~~-~~~-------~~~~~~~~~~ 63 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGH-----TVIG----IDRGQADIEADLSTPGGRET-AVA-------AVLDRCGGVL 63 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSSSSEECCTTSHHHHHH-HHH-------HHHHHHTTCC
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCC-----EEEE----EeCChhHccccccCCcccHH-HHH-------HHHHHcCCCc
Confidence 46899999999999999999998764 2433 233322211 0122332211 000 000111 479
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc--CCCeEEEEeCC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA--SRNVKVIVVGN 223 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a--~p~a~vIvvtN 223 (405)
|+||..+|.... .......+..|..-...+.+.+.+.. ...+.+|+++-
T Consensus 64 d~vi~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS 114 (255)
T 2dkn_A 64 DGLVCCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS 114 (255)
T ss_dssp SEEEECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred cEEEECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence 999998875431 12233455666554444444433321 13467777764
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0084 Score=54.58 Aligned_cols=45 Identities=27% Similarity=0.206 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
|++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 45 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGK-----ATYL----TGRSESKLSTVTNCL 45 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHHHHTC
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 45799999999999999999999875 2554 466667766555444
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0035 Score=59.43 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=44.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|..++..|...+. ++.+ +|++.++++... +. .+.+..+..++++++|+|
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~-----~V~~----~~~~~~~~~~~~----~~------g~~~~~~~~~~~~~~Dvv 60 (296)
T 2gf2_A 1 MPVGFIG-LGNMGNPMAKNLMKHGY-----PLII----YDVFPDACKEFQ----DA------GEQVVSSPADVAEKADRI 60 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHHTTC-----CEEE----ECSSTHHHHHHH----TT------TCEECSSHHHHHHHCSEE
T ss_pred CeEEEEe-ccHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHH----Hc------CCeecCCHHHHHhcCCEE
Confidence 5899999 59999999999998764 3554 466656554322 11 133445566778899999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 61 i~~v 64 (296)
T 2gf2_A 61 ITML 64 (296)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9874
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.015 Score=57.66 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=44.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||+|+||+|.+|..++..|...+. . .+.|.++...++..+ ...+. . .+..+..-+.+++.++|+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~-p---~~el~~~as~~saG~----~~~~~----~--~~~~~~~~~~~~~~~~Dv 67 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASARSAGK----SLKFK----D--QDITIEETTETAFEGVDI 67 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCC-C---EEEEEEEECTTTTTC----EEEET----T--EEEEEEECCTTTTTTCSE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCC-C---cEEEEEEEccccCCC----cceec----C--CCceEeeCCHHHhcCCCE
Confidence 37999999999999999998887642 1 244544433332111 11111 0 234444334567899999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
||++.+
T Consensus 68 vf~a~~ 73 (366)
T 3pwk_A 68 ALFSAG 73 (366)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 998754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.035 Score=52.95 Aligned_cols=116 Identities=14% Similarity=0.034 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea--- 169 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... . ++.+ ..| +.+.
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 97 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGA-----RLVL----SDVDQPALEQAVNGLRGQG-F---DAHGVVCDVRHLDEMVR 97 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---ceEEEEccCCCHHHHHH
Confidence 46899999999999999999999875 2444 5677777776666665432 1 1211 111 2221
Q ss_pred --------cCCCcEEEEeCCcCCC-C--CCc---hhhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 --------FEDAEWALLIGAKPRG-P--GME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k-~--g~~---r~~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+...|++|..+|.... + ..+ -...+..|. .+.+.+.+.+.+. +..+.||+++--.
T Consensus 98 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~~ 170 (301)
T 3tjr_A 98 LADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQ-GTGGHIAFTASFA 170 (301)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEECCGG
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCcEEEEeCchh
Confidence 2378999998875421 1 111 112344443 3445555556654 2468888887543
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0028 Score=59.44 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--C
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--d 172 (405)
+++||.|+||+|++|++++..|+..|. .|.. .+++ ..|+.+.. ...++++ +
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~-------~~Dl~d~~-----------~~~~~~~~~~ 63 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNV-----EVIP----TDVQ-------DLDITNVL-----------AVNKFFNEKK 63 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSE-----EEEE----ECTT-------TCCTTCHH-----------HHHHHHHHHC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCC-----eEEe----ccCc-------cCCCCCHH-----------HHHHHHHhcC
Confidence 468999999999999999999998763 2332 2332 01222111 1123344 7
Q ss_pred CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 173 AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 173 ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+|+||.+++..... ..+....+..|..-...+.+.+.+. +. .+|.++-
T Consensus 64 ~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~--~iv~~SS 113 (292)
T 1vl0_A 64 PNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-GA--EIVQIST 113 (292)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-TC--EEEEEEE
T ss_pred CCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEech
Confidence 99999987743210 0123345677888888888888875 23 6666653
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0052 Score=56.52 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=66.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCc-----
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP----- 166 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~----- 166 (405)
..+.++|.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.+.. .+... ..+
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~~D~~~~~~~~ 76 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGS-----KVII----SGSNEEKLKSLGNALKDNY-----TIEVCNLANKEECS 76 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCSSE-----EEEECCTTSHHHHH
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhccCc-----cEEEcCCCCHHHHH
Confidence 34568999999999999999999999874 2444 4666666665555543211 11110 111
Q ss_pred --ccccCCCcEEEEeCCcCCC-C--CC---chhhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 167 --YELFEDAEWALLIGAKPRG-P--GM---ERAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 167 --~eal~dADiVIi~~g~~~k-~--g~---~r~~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+.+...|++|..+|.... + .. +-...+..|. .+.+...+.+.+. ..+.||+++-..
T Consensus 77 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~ 145 (249)
T 3f9i_A 77 NLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK--RYGRIINISSIV 145 (249)
T ss_dssp HHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCCC
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEEccHH
Confidence 1223478999998775321 1 11 1223344453 3444455555553 467888887644
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.1 Score=48.81 Aligned_cols=118 Identities=12% Similarity=0.116 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cccc--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL-- 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~ea-- 169 (405)
+.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... ....++.+. .| +.+.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~~Dv~~~~~v~ 79 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-----SVMI----VGRNPDKLAGAVQELEALG-ANGGAIRYEPTDITNEDETA 79 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTC-CSSCEEEEEECCTTSHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC-CCCceEEEEeCCCCCHHHHH
Confidence 356899999999999999999999875 2544 4667777777777665432 111123222 11 2221
Q ss_pred ---------cCCCcEEEEeCCcCCCCC----Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 ---------FEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 ---------l~dADiVIi~~g~~~k~g----~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|.....+ .+. ...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 80 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 152 (281)
T 3svt_A 80 RAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRG--GGGSFVGISSI 152 (281)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCH
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEeCH
Confidence 236799999887522211 111 123455543 344455555552 56888888753
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.069 Score=49.54 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea--- 169 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+.. . ..++.. ..| +.+.
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~D~~~~~~v~~ 75 (267)
T 2gdz_A 7 GKVALVTGAAQGIGRAFAEALLLKGA-----KVAL----VDWNLEAGVQCKAALHEQF-E-PQKTLFIQCDVADQQQLRD 75 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTTTS-C-GGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhc-C-CCceEEEecCCCCHHHHHH
Confidence 46899999999999999999999874 2444 3555555554444453321 0 112222 111 2222
Q ss_pred --------cCCCcEEEEeCCcCCCCCCchhhhHHhhHH----HHHHHHHHHHhhcC-CCeEEEEeCCch
Q 015501 170 --------FEDAEWALLIGAKPRGPGMERAGLLDINGQ----IFAEQGKALNAVAS-RNVKVIVVGNPC 225 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k~g~~r~~ll~~N~~----i~~~i~~~i~~~a~-p~a~vIvvtNP~ 225 (405)
+...|++|..+|... ..+-...+..|.. ..+.+.+.+.+... +.+.||+++-..
T Consensus 76 ~~~~~~~~~g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~ 142 (267)
T 2gdz_A 76 TFRKVVDHFGRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA 142 (267)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred HHHHHHHHcCCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence 235799999887532 1222234555544 55666666655321 257888887543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.043 Score=51.09 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cccc--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea-- 169 (405)
+.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... . .++.. ..| +++.
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~~~~~v~ 76 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGA-----NVAV----AGRSTADIDACVADLDQLG-S--GKVIGVQTDVSDRAQCD 76 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTS-S--SCEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhC-C--CcEEEEEcCCCCHHHHH
Confidence 346899999999999999999999875 2544 4667777777777665432 1 12222 111 2222
Q ss_pred ---------cCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 ---------FEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 ---------l~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|... .+- .+.. ..+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 77 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 148 (262)
T 3pk0_A 77 ALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIAS--GSGRVVLTSSI 148 (262)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--SSCEEEEECCS
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEech
Confidence 237899999887532 221 1222 23444533 445555666553 45677776643
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.035 Score=51.30 Aligned_cols=116 Identities=14% Similarity=0.036 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .++... .| +.+
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 79 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-----VIHT----CARNEYELNECLSKWQKKG----FQVTGSVCDASLRPERE 79 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeeEEEECCCCCHHHHH
Confidence 357899999999999999999999874 2444 4555566665555554321 122211 11 221
Q ss_pred -cc--------CCCcEEEEeCCcCCC-C--CCc---hhhhHHhhHHHHHHH----HHHHHhhcCCCeEEEEeCCch
Q 015501 169 -LF--------EDAEWALLIGAKPRG-P--GME---RAGLLDINGQIFAEQ----GKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -al--------~dADiVIi~~g~~~k-~--g~~---r~~ll~~N~~i~~~i----~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+ ...|+||..+|.... + ..+ -...+..|..-...+ .+.+++. ..+.||+++-..
T Consensus 80 ~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~isS~~ 153 (266)
T 1xq1_A 80 KLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS--GCGNIIFMSSIA 153 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCEEEEEC---
T ss_pred HHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEccch
Confidence 12 578999998875321 1 111 122345565443333 4444553 356777777543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.047 Score=45.55 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~ 143 (405)
+|++|.|+|+ |.+|.+++..|...|. ++.+ +|+++++++
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~-----~V~~----id~~~~~~~ 43 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGK-----KVLA----VDKSKEKIE 43 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EESCHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----EECCHHHHH
Confidence 3678999996 9999999999998765 3544 466666654
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.018 Score=56.49 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH-HHHhhhhcCCCcceEEEecC-ccccc-C
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-AMELEDSLFPLLREVKIGIN-PYELF-E 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~-a~DL~d~~~~~~~~v~i~~~-~~eal-~ 171 (405)
.|+||+|+||+|.+|..++..|...+- +.+..+......+. .|. ..|..-..... .+..+..- +.+++ +
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~------~el~~l~s~~~~~s-aGk~~~~~~p~~~~~-~~~~v~~~~~~~~~~~ 74 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPH------MNITALTVSAQSND-AGKLISDLHPQLKGI-VELPLQPMSDISEFSP 74 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTT------EEEEEEEEETTCTT-TTSBHHHHCGGGTTT-CCCBEEEESSGGGTCT
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCC------CcEEEEEecCchhh-cCCchHHhCccccCc-cceeEeccCCHHHHhc
Confidence 478999999999999999998887543 23333222220001 111 11111000010 12233321 34566 8
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
++|+||++.+ ...-+++++.+.+ .++++|..+.+-
T Consensus 75 ~~Dvvf~a~p----------------~~~s~~~~~~~~~---~g~~vIDlSa~f 109 (337)
T 3dr3_A 75 GVDVVFLATA----------------HEVSHDLAPQFLE---AGCVVFDLSGAF 109 (337)
T ss_dssp TCSEEEECSC----------------HHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred CCCEEEECCC----------------hHHHHHHHHHHHH---CCCEEEEcCCcc
Confidence 9999998754 1334455555544 356888888764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.04 Score=51.78 Aligned_cols=115 Identities=16% Similarity=0.065 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.++|.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++.... .++.. ..| +.+
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~d~~~v~~ 110 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVS-----HVIC----ISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISE 110 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSS-----EEEE----EESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHHHhcC----CceeEEECCCCCHHHHHH
Confidence 46899999999999999999998764 2443 3555566665555554321 12221 111 222
Q ss_pred -------ccCCCcEEEEeCCcCCCC---CCc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 -------LFEDAEWALLIGAKPRGP---GME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k~---g~~---r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|+||..+|..... ..+ -...+..|..- .+.+.+.+.+. ..+.||+++-..
T Consensus 111 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~~ 182 (285)
T 2c07_A 111 VINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN--RYGRIINISSIV 182 (285)
T ss_dssp HHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCEEEEEECCTH
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEECChh
Confidence 224789999988754211 111 12234455443 44445555543 357888887553
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0087 Score=55.82 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=58.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc--ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--c---Ccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYEL 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~--~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~---~~~ea 169 (405)
+||.|+||+|++|++++..|+.. +. ++.. .+++.+++.. +.+.. . .+... + ...++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-----~V~~----~~r~~~~~~~----l~~~~--~--~~~~~D~~d~~~l~~~ 63 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS-----QIIA----IVRNVEKAST----LADQG--V--EVRHGDYNQPESLQKA 63 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG-----GEEE----EESCTTTTHH----HHHTT--C--EEEECCTTCHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC-----eEEE----EEcCHHHHhH----HhhcC--C--eEEEeccCCHHHHHHH
Confidence 47999999999999999999986 53 2433 2344333321 11110 0 11111 1 12357
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++++|+||.+++.. ++ . ..|......+.+.+.+. +. ..+|.++
T Consensus 64 ~~~~d~vi~~a~~~--~~--~----~~n~~~~~~l~~a~~~~-~~-~~~v~~S 106 (287)
T 2jl1_A 64 FAGVSKLLFISGPH--YD--N----TLLIVQHANVVKAARDA-GV-KHIAYTG 106 (287)
T ss_dssp TTTCSEEEECCCCC--SC--H----HHHHHHHHHHHHHHHHT-TC-SEEEEEE
T ss_pred HhcCCEEEEcCCCC--cC--c----hHHHHHHHHHHHHHHHc-CC-CEEEEEC
Confidence 88999999987642 11 1 34677777788877774 22 3555554
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.066 Score=49.39 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--Ccc-----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPY----- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~----- 167 (405)
+.+++.|+||+|.||.+++..|++.|. .+.+ .+++.++++..+.++.+.......-+..-. .+.
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 81 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYGA-----TVIL----LGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQ 81 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHH
Confidence 346899999999999999999999875 2444 466667777666666543211110111111 111
Q ss_pred ------cccCCCcEEEEeCCcC--CCCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 168 ------ELFEDAEWALLIGAKP--RGPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~--~k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+.+...|++|..+|.. ..+- .+.. ..+..|.. +.+.+.+.+.+. ..+.||+++--.
T Consensus 82 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~~ 154 (252)
T 3f1l_A 82 LAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS--DAGSLVFTSSSV 154 (252)
T ss_dssp HHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECCGG
T ss_pred HHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC--CCCEEEEECChh
Confidence 1223789999988753 2221 1221 23455543 344555555553 467777777543
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0068 Score=57.91 Aligned_cols=114 Identities=10% Similarity=-0.088 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH-HHHHHhhhhcCCCcceEEEe-cC--cc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIG-IN--PY--- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~-~~--~~--- 167 (405)
+++||.|+||+|++|++++..|+..|. .|.. .+++..... ....++.. ..++.+. .| +.
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~ 78 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGY-----RVHG----LVARRSSDTRWRLRELGI-----EGDIQYEDGDMADACSV 78 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCCSSCCCHHHHHTTC-----GGGEEEEECCTTCHHHH
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCC-----eEEE----EeCCCccccccchhhccc-----cCceEEEECCCCCHHHH
Confidence 468999999999999999999998763 2433 223222110 01111210 1122221 11 22
Q ss_pred -cccCC--CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 -ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 -eal~d--ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+++++ .|+||.+++..... ..+....+..|+.-...+.+.+.+. +....+|.++-
T Consensus 79 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS 138 (335)
T 1rpn_A 79 QRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQAST 138 (335)
T ss_dssp HHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEE
T ss_pred HHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 34444 59999988753211 1233456677888888888888876 23356666654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.058 Score=50.27 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c--Cccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~e--- 168 (405)
+.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... . .++... . .+.+
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~~~~~v~ 86 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA-----RLVL----SGRDVSELDAARRALGEQF-G--TDVHTVAIDLAEPDAPA 86 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTSTTHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-C--CcEEEEEecCCCHHHHH
Confidence 346899999999999999999999875 2444 4666677776666665421 1 112211 1 1222
Q ss_pred --------ccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 --------LFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~k~g---~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|...... .+.. ..+..|.. +.+.+.+.+.+. +..+.||+++--.
T Consensus 87 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~~ 160 (266)
T 4egf_A 87 ELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAA-GEGGAIITVASAA 160 (266)
T ss_dssp HHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCGG
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEEcchh
Confidence 2237899999887543211 1111 23444533 455555666664 2467888887543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.029 Score=51.37 Aligned_cols=116 Identities=15% Similarity=0.068 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+.. .++... .| +.+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 70 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-----TVVG----TATSQASAEKFENSMKEKG----FKARGLVLNISDIESIQ 70 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEEecCCCHHHHH
Confidence 356899999999999999999999875 2444 4566666666655554332 112211 11 222
Q ss_pred --------ccCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 --------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|...... .+ -...+..|.. +.+...+.+.+. ..+.||+++-..
T Consensus 71 ~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~ 143 (247)
T 3lyl_A 71 NFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK--RWGRIISIGSVV 143 (247)
T ss_dssp HHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCTH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCeEEEEEcchh
Confidence 1235799999887643211 11 1123444533 344445555553 467888887654
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.011 Score=56.70 Aligned_cols=112 Identities=12% Similarity=0.052 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc------hhhhHHHHHHHhhhhcCCCcceEE-EecC--c-
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER------SLQALEGVAMELEDSLFPLLREVK-IGIN--P- 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~------~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~- 166 (405)
++|.|+||+|+||++++..|+..|. .|.+....... ..+.++ ++.+.. .. ++. +..| +
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~r~~~~~~~~~~----~l~~~~-~~--~~~~~~~D~~~~ 70 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGY-----LPVVIDNFHNAFRGGGSLPESLR----RVQELT-GR--SVEFEEMDILDQ 70 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-----CEEEEECSSSSCBCSSSSBHHHH----HHHHHH-TC--CCEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEEecCCcccccccccHHHHH----HHHhcc-CC--ceEEEECCCCCH
Confidence 6899999999999999999998764 24331110000 112221 222111 00 111 1111 2
Q ss_pred ---ccccC--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 ---YELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ---~eal~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.++++ ++|+||.+++..... ..+....+..|+.-...+.+.+.+. .-..+|.++
T Consensus 71 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~iv~~S 131 (348)
T 1ek6_A 71 GALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH--GVKNLVFSS 131 (348)
T ss_dssp HHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh--CCCEEEEEC
Confidence 23445 799999987743210 0123346677888888888888774 224555555
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0028 Score=60.61 Aligned_cols=113 Identities=14% Similarity=0.011 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH-HHHHhhhhcCCCcceEEEec-C--c----c
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIGI-N--P----Y 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g-~a~DL~d~~~~~~~~v~i~~-~--~----~ 167 (405)
.+||.|+||+|+||++++..|+..|. .|.+ .+++.+.+.. ...++.. ..++.+.. | + .
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~ 68 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY-----EVYG----ADRRSGEFASWRLKELGI-----ENDVKIIHMDLLEFSNII 68 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECSCCSTTTTHHHHHTTC-----TTTEEECCCCTTCHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EECCCcccccccHhhccc-----cCceeEEECCCCCHHHHH
Confidence 46899999999999999999998764 2433 2333222211 1111110 01222211 1 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~d--ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+++++ .|+||.+++..... ..+....+..|+.-...+.+.+.+. +..+.+|.++-
T Consensus 69 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS 127 (345)
T 2z1m_A 69 RTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQAST 127 (345)
T ss_dssp HHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEE
T ss_pred HHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEec
Confidence 34444 59999988753210 1223345677877788888887775 23356666653
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.023 Score=52.53 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYE-- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e-- 168 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .++ +.+.++....++.... .++.+ ..| +.+
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~ 86 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRGA-----SVVV----NYGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEV 86 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EcCCchHHHHHHHHHHHhcC----CcEEEEEecCCCHHHH
Confidence 346899999999999999999999874 2443 233 4455554545554321 12221 111 222
Q ss_pred --cc-------CCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 --LF-------EDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 --al-------~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+ .+.|+||..+|...... .+ -...+..|..-...+.+.+.++...++.||+++--
T Consensus 87 ~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~ 157 (274)
T 1ja9_A 87 VALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI 157 (274)
T ss_dssp HHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcCh
Confidence 22 27899998877542111 11 12345666665566666555543223677777654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.03 Score=51.98 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c--Ccccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~ea--- 169 (405)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .++.+. . .+.+.
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~ 95 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKLGSLGA-----RVVL----TARDVEKLRAVEREIVAAG----GEAESHACDLSHSDAIAA 95 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhC----CceeEEEecCCCHHHHHH
Confidence 46899999999999999999999875 2444 4667777776666665332 122221 1 12222
Q ss_pred --------cCCCcEEEEeCCcCCCCC----Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 --------FEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k~g----~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|.....+ .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 96 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 167 (262)
T 3rkr_A 96 FATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA--KRGHIINISSL 167 (262)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCCEEEEECSS
T ss_pred HHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCceEEEEech
Confidence 235899999887522111 111 123444533 344555555553 46778877754
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0015 Score=61.29 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccCC-C
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFED-A 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~d-A 173 (405)
++||.|+| +|++|++++..|+..|. +|.. .+++.+.+. ... .+ ..++.-.....+++++ +
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~-------~~~-~~~~~Dl~d~~~~~~~~~~~~ 64 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQGH-----EVTG----LRRSAQPMP-------AGV-QTLIADVTRPDTLASIVHLRP 64 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----EECTTSCCC-------TTC-CEEECCTTCGGGCTTGGGGCC
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EeCCccccc-------cCC-ceEEccCCChHHHHHhhcCCC
Confidence 67999999 59999999999998764 2433 233322211 000 00 0000000112345556 9
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|+||.+++... .+.......|+.....+.+.+.+. .-..+|.+|
T Consensus 65 d~vih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~--~~~~~v~~S 108 (286)
T 3gpi_A 65 EILVYCVAASE---YSDEHYRLSYVEGLRNTLSALEGA--PLQHVFFVS 108 (286)
T ss_dssp SEEEECHHHHH---HC-----CCSHHHHHHHHHHTTTS--CCCEEEEEE
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhC--CCCEEEEEc
Confidence 99998876421 112234456777788888877763 224555555
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.011 Score=60.64 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=62.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh---hHHHHHHHhhhhc-----CCCcceEEEec-
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSL-----FPLLREVKIGI- 164 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~---~l~g~a~DL~d~~-----~~~~~~v~i~~- 164 (405)
..|++|.|+||+|++|++++..|...+. .|.. .+++.. .+......+.... .....++.+..
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~-----~V~~----l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~ 218 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSH-----RIYC----FIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVG 218 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEE-----EEEE----EEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEE
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCC-----EEEE----EECCCChHHHHHHHHHHHHHhcccccchhccCceEEEec
Confidence 4578999999999999999999965443 2322 233322 2222222221110 00011233221
Q ss_pred C--ccc---ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 165 N--PYE---LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 165 ~--~~e---al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
| +.+ ++.++|+||.+++... ...+...+...|+.....+++.+.+ . ...++.++
T Consensus 219 Dl~d~~~l~~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~--~~~~v~iS 277 (508)
T 4f6l_B 219 DFECMDDVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-H--HARLIYVS 277 (508)
T ss_dssp BTTBCSSCCCSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T--TCEEEEEE
T ss_pred CCcccccCCCccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-C--CCcEEEeC
Confidence 1 111 5679999999877542 2233445667798888999888877 2 23455544
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.012 Score=55.50 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc-------
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY------- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~------- 167 (405)
+.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... ..+..-..+.
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~d~~~v~~~~ 92 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGA-----YVVV----ADVNEDAAVRVANEIGSKA----FGVRVDVSSAKDAESMV 92 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHCTTE----EEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCce----EEEEecCCCHHHHHHHH
Confidence 346899999999999999999999875 2444 4566666665554432111 0011111111
Q ss_pred ----cccCCCcEEEEeCCcCCC-C--CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ----ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ----eal~dADiVIi~~g~~~k-~--g~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.... + ..+. ...+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 93 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 161 (277)
T 4dqx_A 93 EKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN--GGGSIINTTSY 161 (277)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--TCEEEEEECCG
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEECch
Confidence 122378999998875321 1 1111 1234455433 44445555542 46788888754
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.038 Score=50.45 Aligned_cols=115 Identities=10% Similarity=-0.012 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~ea--- 169 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++... .++.+. .| +.+.
T Consensus 6 ~k~vlVtGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~ 71 (251)
T 1zk4_A 6 GKVAIITGGTLGIGLAIATKFVEEGA-----KVMI----TGRHSDVGEKAAKSVGTP-----DQIQFFQHDSSDEDGWTK 71 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhhcc-----CceEEEECCCCCHHHHHH
Confidence 46899999999999999999999774 2444 455555555444444321 122221 11 2221
Q ss_pred --------cCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 --------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+...|+||..+|...... .+ -...+..|.. +.+.+.+.+.+. +..+.||+++...
T Consensus 72 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~~iv~isS~~ 144 (251)
T 1zk4_A 72 LFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK-GLGASIINMSSIE 144 (251)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEEECCGG
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCCch
Confidence 235899999877542111 11 1234556654 445555555553 1227788887543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.083 Score=49.17 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~------ 166 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+.++..+.++.... +. ..+. +..| +
T Consensus 10 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~D~~~~~~~~~ 78 (267)
T 3t4x_A 10 GKTALVTGSTAGIGKAIATSLVAEGA-----NVLI----NGRREENVNETIKEIRAQY-PD-AILQPVVADLGTEQGCQD 78 (267)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHC-TT-CEEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhC-CC-ceEEEEecCCCCHHHHHH
Confidence 46899999999999999999999875 2544 4666677766666665432 11 1121 1111 1
Q ss_pred -ccccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 167 -YELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 167 -~eal~dADiVIi~~g~~~k~g---~~r~---~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+.+...|++|..+|...... .+.. ..+..|..- .+.+.+.+.+. ..+.||+++--.
T Consensus 79 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~ 146 (267)
T 3t4x_A 79 VIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER--KEGRVIFIASEA 146 (267)
T ss_dssp HHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TEEEEEEECCGG
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCEEEEEcchh
Confidence 123457899999887543211 1111 234555433 55556666653 567888887543
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.056 Score=49.87 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----c
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----L 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e----a 169 (405)
+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... . ++.. ..| +.+ .
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~v~~~ 69 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGF-----AVAI----ADYNDATAKAVASEINQAG-G---HAVAVKVDVSDRDQVFAA 69 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEEecCCCHHHHHHH
Confidence 4789999999999999999999874 2444 4566666665555554321 1 1211 111 222 2
Q ss_pred -------cCCCcEEEEeCCcCCC-CC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 -------FEDAEWALLIGAKPRG-PG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 -------l~dADiVIi~~g~~~k-~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|.... +- .+.. ..+..|.. +.+.+.+.+.+. +..+.||+++--
T Consensus 70 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 140 (256)
T 1geg_A 70 VEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE-GHGGKIINACSQ 140 (256)
T ss_dssp HHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCEEEEECch
Confidence 2378999998875321 11 1111 23444533 445555666654 225788887754
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.074 Score=49.18 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc----c
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----e 168 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++..+.++.... +. .++.. ..| +. +
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~ 75 (260)
T 2z1n_A 7 GKLAVVTAGSSGLGFASALELARNGA-----RLLL----FSRNREKLEAAASRIASLV-SG-AQVDIVAGDIREPGDIDR 75 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHS-TT-CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CC-CeEEEEEccCCCHHHHHH
Confidence 46899999999999999999999874 2444 4566666665555554220 00 01221 111 22 2
Q ss_pred ccC------CCcEEEEeCCcCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 LFE------DAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 al~------dADiVIi~~g~~~k~g---~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.++ +.|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 76 ~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 145 (260)
T 2z1n_A 76 LFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK--GWGRMVYIGSV 145 (260)
T ss_dssp HHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECch
Confidence 222 4899999887542211 111 123445543 335555666553 35778887754
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.01 Score=53.84 Aligned_cols=112 Identities=20% Similarity=0.121 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc--------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE-------- 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e-------- 168 (405)
++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... -+..-..+.+
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~D~~~~~~~~~~~~~ 71 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGY-----RVGL----MARDEKRLQALAAELEGAL-----PLPGDVREEGDWARAVAA 71 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE-----EEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhhce-----EEEecCCCHHHHHHHHHH
Confidence 5799999999999999999999774 2444 3555555554443332110 0111011111
Q ss_pred ---ccCCCcEEEEeCCcCCC-CC--Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ---LFEDAEWALLIGAKPRG-PG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ---al~dADiVIi~~g~~~k-~g--~~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.... +- .+ -...+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 72 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 138 (234)
T 2ehd_A 72 MEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR--GGGTIVNVGSL 138 (234)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCT
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCcEEEEECCc
Confidence 22378999998775321 11 11 1223445543 334555555553 45788887754
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0084 Score=55.63 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ec--Ccccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~ea--- 169 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++.++++..+.++.. ++.. .. .+.++
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~ 68 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGA-----RVVL----ADVLDEEGAATARELGD-------AARYQHLDVTIEEDWQR 68 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTTGG-------GEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCC-------ceeEEEecCCCHHHHHH
Confidence 46899999999999999999999875 2444 45665666544443311 1111 11 12222
Q ss_pred --------cCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 --------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|...... .+. ...+..|.. +.+.+.+.+++. ..+.||+++--
T Consensus 69 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 139 (254)
T 1hdc_A 69 VVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISSA 139 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECch
Confidence 227999999887543211 111 123444533 344666666664 35788888754
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.06 Score=50.81 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... .++.. ..| +.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 94 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGV-----TVGA----LGRTRTEVEEVADEIVGAG----GQAIALEADVSDELQMRN 94 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHTTTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 46789999999999999999999875 2444 4666677776666665322 12221 111 22
Q ss_pred ------cccCCCcEEEEeCCcCC--CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ------ELFEDAEWALLIGAKPR--GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~~--k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|... .+- .+.. ..+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 95 ~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~ 166 (283)
T 3v8b_A 95 AVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR--GGGAIVVVSSI 166 (283)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCS
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCceEEEEcCh
Confidence 12237899999887532 221 2211 23455533 445555555663 46788887753
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.051 Score=49.62 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ec--Ccc----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPY---- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~---- 167 (405)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.....+. ..+.. .. .+.
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~-~~~~~~d~d~~~~~~~~ 82 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGA-----SVVL----LGRTEASLAEVSDQIKSAGQPQ-PLIIALNLENATAQQYR 82 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTSCC-CEEEECCTTTCCHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EecCHHHHHHHHHHHHhcCCCC-ceEEEeccccCCHHHHH
Confidence 346899999999999999999999875 2444 4666677776666555432111 11111 11 111
Q ss_pred -------cccCCCcEEEEeCCcCC--CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 -------ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 -------eal~dADiVIi~~g~~~--k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 83 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 155 (247)
T 3i1j_A 83 ELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRS--EDASIAFTSSS 155 (247)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS--SSEEEEEECCG
T ss_pred HHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCeEEEEcch
Confidence 12237899999887532 221 111 123444533 344444545542 46788887754
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.081 Score=49.71 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc----c-
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----L- 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----a- 169 (405)
+.+++.|+||+|.||.+++..|++.|. .|.+ .+++.+.++..+.++.... ....-+..-..+++ .
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~ 100 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGA-----QVAV----AARHSDALQVVADEIAGVG-GKALPIRCDVTQPDQVRGML 100 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHH
Confidence 346899999999999999999999875 2444 4566677776666665422 11001111111221 2
Q ss_pred ------cCCCcEEEEeCCcCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 ------FEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 ------l~dADiVIi~~g~~~k~g---~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. +..+.||+++--
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~~g~iv~isS~ 170 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQ-GLGGTIITTASM 170 (276)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcEEEEECch
Confidence 237899999887543211 1111 2234453 3455555666654 245778877643
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.069 Score=49.11 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea--- 169 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++..+.++.... .++.. ..| +.+.
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~~~~~~~ 73 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGA-----AVAI----AARRVEKLRALGDELTAAG----AKVHVLELDVADRQGVDA 73 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 46899999999999999999999875 2444 4566666666655554321 12221 111 2222
Q ss_pred --------cCCCcEEEEeCCcCCC-C--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 --------FEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k-~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|.... + ..+.. ..+..|.. +.+...+.+.+. . +.||+++--
T Consensus 74 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~-g~iv~isS~ 143 (247)
T 2jah_A 74 AVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS--K-GTVVQMSSI 143 (247)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--C-CEEEEEccH
Confidence 2378999998875421 1 11211 23455543 344444555443 3 778887753
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.019 Score=52.63 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc-----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL----- 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea----- 169 (405)
+.++|.|+||+|.+|.+++..|++.|. .+.+ .+++.++++....++.... ..-+..-..+.+.
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~---~~~~~~D~~~~~~~~~~~ 77 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA-----RLIL----IDREAAALDRAAQELGAAV---AARIVADVTDAEAMTAAA 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGE---EEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcccc---eeEEEEecCCHHHHHHHH
Confidence 346899999999999999999999774 2444 4566566655444442100 0000000112221
Q ss_pred -----cCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 -----FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 -----l~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+...|+||..+|...... .+ -...+..|..- .+.+.+.+.+. ..+.||+++...
T Consensus 78 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~isS~~ 146 (254)
T 2wsb_A 78 AEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR--GAGAIVNLGSMS 146 (254)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEecch
Confidence 257899999887542211 11 12234455443 44555555553 457788877543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.053 Score=50.26 Aligned_cols=115 Identities=12% Similarity=0.065 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+.++..+.++.+.. . ++.. ..| +.+
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~d~~~v~~ 78 (256)
T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGA-----SVVV----TDLKSEGAEAVAAAIRQAG-G---KAIGLECNVTDEQHREA 78 (256)
T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTC-----EEEE----EESSHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEECCCCCHHHHHH
Confidence 46899999999999999999999875 2444 4666677776666665432 1 2221 111 221
Q ss_pred -------ccCCCcEEEEeCCcCCC-C-CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 -------LFEDAEWALLIGAKPRG-P-GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k-~-g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|.... + ..+.. ..+..|.. +.+...+.+.+. ..+.||+++-..
T Consensus 79 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 149 (256)
T 3gaf_A 79 VIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA--GGGAILNISSMA 149 (256)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCGG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcCHH
Confidence 12378999998875421 1 12211 23444533 444555555553 468888887543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.087 Score=48.69 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... .++... .| +.+
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 74 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-----SVYT----CSRNQKELNDCLTQWRSKG----FKVEASVCDLSSRSERQ 74 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHH
Confidence 346899999999999999999999874 2444 4566666665555554321 122221 11 221
Q ss_pred -c-------c-CCCcEEEEeCCcCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -L-------F-EDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -a-------l-~dADiVIi~~g~~~k-~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
. + ...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 75 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 147 (260)
T 2ae2_A 75 ELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS--ERGNVVFISSV 147 (260)
T ss_dssp HHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--SSEEEEEECCG
T ss_pred HHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 1 2 579999998875421 11 111 123445543 344444445542 45788888754
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.009 Score=57.78 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+.++|+||| +|.+|..++..|... ++ ..+.+ .|++.++++..+.++.. ++....+..+++++|
T Consensus 134 ~~~~igiIG-~G~~g~~~a~~l~~~~g~----~~V~v----~dr~~~~~~~l~~~~~~-------~~~~~~~~~e~v~~a 197 (312)
T 2i99_A 134 SSEVLCILG-AGVQAYSHYEIFTEQFSF----KEVRI----WNRTKENAEKFADTVQG-------EVRVCSSVQEAVAGA 197 (312)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHCCC----SEEEE----ECSSHHHHHHHHHHSSS-------CCEECSSHHHHHTTC
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCC----cEEEE----EcCCHHHHHHHHHHhhC-------CeEEeCCHHHHHhcC
Confidence 468999999 599999999998875 42 23544 56777777655543321 233445667888999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+++
T Consensus 198 DiVi~a 203 (312)
T 2i99_A 198 DVIITV 203 (312)
T ss_dssp SEEEEC
T ss_pred CEEEEE
Confidence 999986
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0069 Score=55.98 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 56 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGA-----SAVL----LDLPNSGGEAQAKKL 56 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCcHhHHHHHHHh
Confidence 457899999999999999999999874 2444 355555555444444
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.054 Score=50.59 Aligned_cols=117 Identities=16% Similarity=0.099 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch------------hhhHHHHHHHhhhhcCCCcceEEE-
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS------------LQALEGVAMELEDSLFPLLREVKI- 162 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~------------~~~l~g~a~DL~d~~~~~~~~v~i- 162 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++ .+.++....++.... .++..
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 76 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGA-----DIIL----FDICHDIETNEYPLATSRDLEEAGLEVEKTG----RKAYTA 76 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCSCCTTSCSCCCCHHHHHHHHHHHHHTT----SCEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----eEEE----EcccccccccccchhhhHHHHHHHHHHHhcC----CceEEE
Confidence 46899999999999999999999875 2444 2332 344454444443321 12221
Q ss_pred ecC--cccc-----------cCCCcEEEEeCCcCCCC-CCc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 163 GIN--PYEL-----------FEDAEWALLIGAKPRGP-GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 163 ~~~--~~ea-----------l~dADiVIi~~g~~~k~-g~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
..| +.+. +...|++|..+|..... ..+ -...+..|..-...+.+.+..+-...+.||+++--.
T Consensus 77 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 156 (287)
T 3pxx_A 77 EVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVA 156 (287)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHH
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccch
Confidence 111 2222 23789999988754221 122 123456676656666666655533467888887543
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0042 Score=58.76 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++||.|+||+|++|++++..|+..+.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~ 29 (313)
T 1qyd_A 3 KKSRVLIVGGTGYIGKRIVNASISLGH 29 (313)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhCCC
Confidence 367999999999999999999998763
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0037 Score=59.86 Aligned_cols=106 Identities=10% Similarity=0.027 Sum_probs=62.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c---C----cc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I---N----PY 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~---~----~~ 167 (405)
|||.|+||+|++|++++..|+.. +. .|.+ .+++.+.++. +... .++.+. . + ..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~-----~V~~----~~r~~~~~~~----~~~~-----~~~~~~~~D~~~~~~~~~ 62 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY-----EVYG----LDIGSDAISR----FLNH-----PHFHFVEGDISIHSEWIE 62 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC-----EEEE----EESCCGGGGG----GTTC-----TTEEEEECCTTTCSHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC-----EEEE----EeCCcchHHH----hhcC-----CCeEEEeccccCcHHHHH
Confidence 58999999999999999999986 43 2433 2333333221 1110 112211 1 1 12
Q ss_pred cccCCCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++++++|+||.+++..... ..+....+..|......+.+.+.+. + ..+|.++-
T Consensus 63 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~SS 117 (345)
T 2bll_A 63 YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R--KRIIFPST 117 (345)
T ss_dssp HHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEECC
T ss_pred hhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C--CeEEEEec
Confidence 3566899999987743210 0122345567777777788877774 2 56777765
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.032 Score=50.78 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCC--ceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cccc--
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQ--PIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL-- 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~--~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~ea-- 169 (405)
++|.|+||+|.+|.+++..|+..|....+. .+.+ .+++.+.++....++.... .++.+. .| +.+.
T Consensus 3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~ 74 (244)
T 2bd0_A 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVL----SSRTAADLEKISLECRAEG----ALTDTITADISDMADVR 74 (244)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEE----EESCHHHHHHHHHHHHTTT----CEEEEEECCTTSHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEE----EeCCHHHHHHHHHHHHccC----CeeeEEEecCCCHHHHH
Confidence 579999999999999999999877521110 2333 4556566665555554211 122221 11 2221
Q ss_pred ---------cCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 ---------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 ---------l~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+...|+||..+|...... .+ -...+..|.. +++.+.+.+.+. ..+.||+++-..
T Consensus 75 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~~ 147 (244)
T 2bd0_A 75 RLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ--HSGHIFFITSVA 147 (244)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEEecch
Confidence 237999999887542211 11 1123444543 344444445443 457888887543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.062 Score=49.69 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cccc--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL-- 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~ea-- 169 (405)
+.+++.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.... .++... .| +.+.
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~ 72 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-----TVFA----GRRNGEKLAPLVAEIEAAG----GRIVARSLDARNEDEVT 72 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHHHHTT----CEEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEECcCCCHHHHH
Confidence 356899999999999999999999875 2444 4667777776666665432 122221 11 2222
Q ss_pred --c------CCCcEEEEeCCcCCC-C--CCchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 --F------EDAEWALLIGAKPRG-P--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 --l------~dADiVIi~~g~~~k-~--g~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+ ...|++|..+|.... + ..+.. ..+..|. .+.+.+.+.+.+. ..+.||+++-
T Consensus 73 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 142 (252)
T 3h7a_A 73 AFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH--GQGKIFFTGA 142 (252)
T ss_dssp HHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEE
T ss_pred HHHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 2 256999998875431 1 11111 2344443 3445555666664 4577777764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.062 Score=50.37 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc--------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.+..... ..+..-..+.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~ 97 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGA-----MVIG----TATTEAGAEGIGAAFKQAGLEG-RGAVLNVNDATAVDALVE 97 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHTCCC-EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCcE-EEEEEeCCCHHHHHHHHH
Confidence 46789999999999999999999875 2444 4666667766666555432111 0111111121
Q ss_pred ---cccCCCcEEEEeCCcCCC-C--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ---ELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ---eal~dADiVIi~~g~~~k-~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 165 (270)
T 3ftp_A 98 STLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA--RGGRIVNITSV 165 (270)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECch
Confidence 222378999998875431 1 11211 23445543 344445555553 46788888753
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.084 Score=48.81 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++..+.++.... . .++.. ..| +.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~D~~~~~~~~~ 74 (263)
T 3ai3_A 7 GKVAVITGSSSGIGLAIAEGFAKEGA-----HIVL----VARQVDRLHEAARSLKEKF-G--VRVLEVAVDVATPEGVDA 74 (263)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHHhc-C--CceEEEEcCCCCHHHHHH
Confidence 46899999999999999999999874 2444 4566566665555554321 1 11221 111 222
Q ss_pred c-------cCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 L-------FEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 a-------l~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
. +...|++|..+|... .+- .+.. ..+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 75 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 145 (263)
T 3ai3_A 75 VVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRAR--GGGAIIHNASI 145 (263)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECch
Confidence 1 237899999887542 111 1211 23444433 444555555553 35778887754
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.043 Score=45.27 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++.+|.|+|+ |.+|..++..|...+.
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~ 30 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGH 30 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTC
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCC
Confidence 3568999996 9999999999998764
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.033 Score=52.57 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~ea--- 169 (405)
.++|.|+||+|.+|.+++..|++.|. .+.+ .+++.+.++....++.... + .++.+. .| +.+.
T Consensus 26 ~k~vlITGasggiG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~~~~ 93 (302)
T 1w6u_A 26 GKVAFITGGGTGLGKGMTTLLSSLGA-----QCVI----ASRKMDVLKATAEQISSQT-G--NKVHAIQCDVRDPDMVQN 93 (302)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-S--SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-C--CceEEEEeCCCCHHHHHH
Confidence 46899999999999999999999874 2444 4566666665555554321 1 122221 11 2221
Q ss_pred --------cCCCcEEEEeCCcCCC-C--CCc---hhhhHHhhHHHH----HHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 --------FEDAEWALLIGAKPRG-P--GME---RAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k-~--g~~---r~~ll~~N~~i~----~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|+||..+|.... + ..+ -...+..|..-. +.+.+.+.+. ...+.||+++--
T Consensus 94 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~~iv~isS~ 165 (302)
T 1w6u_A 94 TVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKA-QKGAAFLSITTI 165 (302)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEECCT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCCCEEEEEccc
Confidence 2245999998875321 1 111 123345554433 3334444432 245778887754
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.019 Score=53.03 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc-------cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP-------YE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~-------~e 168 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++......+..+++-..+. .+
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGA-----TVIV----SDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999875 2444 46666666655555421110000000000001 11
Q ss_pred ccCCCcEEEEeCCcCC-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 al~dADiVIi~~g~~~-k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|... .+- .+. ...+..|.. +.+...+.+.+. +..+.||+++--.
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~~ 142 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAA-GKAGRVISIASNT 142 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCTH
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCcEEEEECchh
Confidence 2237899999887532 221 111 123445533 345555557665 3468888887543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=95.90 E-value=0.03 Score=50.88 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cccc----
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL---- 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~ea---- 169 (405)
++|.|+||+|.+|.+++..|+..|. .+.+. .+++.+.++....++.... . ++... .| +.+.
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~-----~v~~~---~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~~ 69 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGC-----KVLVN---YARSAKAAEEVSKQIEAYG-G---QAITFGGDVSKEADVEAM 69 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHHHT-C---EEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHHhcC-C---cEEEEeCCCCCHHHHHHH
Confidence 4799999999999999999999874 24331 2445555554544444321 1 22211 11 2221
Q ss_pred -------cCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 -------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 -------l~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+.|++|..+|...... .+ -...+..|..- ++...+.+.+. ..+.||+++--
T Consensus 70 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 139 (244)
T 1edo_A 70 MKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIASV 139 (244)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--CCCEEEEECCh
Confidence 237899999887643211 11 11234555443 44444444442 45788888754
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.064 Score=50.30 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.+
T Consensus 22 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~~~~v~~ 88 (277)
T 2rhc_B 22 SEVALVTGATSGIGLEIARRLGKEGL-----RVFV----CARGEEGLRTTLKELREAG----VEADGRTCDVRSVPEIEA 88 (277)
T ss_dssp SCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHH
Confidence 46899999999999999999999874 2444 4566666665555554321 11221 111 111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhh----cCCCeEEEEeCCc
Q 015501 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAV----ASRNVKVIVVGNP 224 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i~~~i~~~i~~~----a~p~a~vIvvtNP 224 (405)
.+...|++|..+|...... .+. ...+..|..-...+.+.+.+. ....+.||+++--
T Consensus 89 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~ 161 (277)
T 2rhc_B 89 LVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAST 161 (277)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCG
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcc
Confidence 2237899999887543211 111 233455655444444443221 0134778887754
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.032 Score=52.08 Aligned_cols=121 Identities=13% Similarity=0.060 Sum_probs=66.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc-
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE- 168 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e- 168 (405)
|.++++|.|+||+|.||.+++..|+..|. .+.+. .+++.+.++....++.+.. .++.+. .| +.+
T Consensus 23 m~~~k~vlITGas~gIG~a~a~~l~~~G~-----~V~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~ 90 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCRLAARQGW-----RVGVN---YAANREAADAVVAAITESG----GEAVAIPGDVGNAAD 90 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE---cCCChhHHHHHHHHHHhcC----CcEEEEEcCCCCHHH
Confidence 34456899999999999999999999875 24331 2455566665555554321 122221 11 222
Q ss_pred ----------ccCCCcEEEEeCCcCCCCC----Cch---hhhHHhhHH----HHHHHHHHHHhhc-CCCeEEEEeCCch
Q 015501 169 ----------LFEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVA-SRNVKVIVVGNPC 225 (405)
Q Consensus 169 ----------al~dADiVIi~~g~~~k~g----~~r---~~ll~~N~~----i~~~i~~~i~~~a-~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|....++ .+. ...+..|.. +.+...+.+.+.. +..+.||+++-..
T Consensus 91 v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~ 169 (272)
T 4e3z_A 91 IAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMA 169 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchH
Confidence 2236799999887643212 111 123445533 3444445554421 1357788877543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.06 Score=49.85 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~ea--- 169 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+.++....++.+.. .++... .| +.++
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 72 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGA-----RVVI----TGRTKEKLEEAKLEIEQFP----GQILTVQMDVRNTDDIQK 72 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCST----TCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 46899999999999999999999875 2444 4677777776666664321 122221 11 2221
Q ss_pred --------cCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 --------FEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|... .+- .+.. ..+..|.. +.+...+.+.+. +..+.||+++--
T Consensus 73 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 144 (257)
T 3imf_A 73 MIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEK-GIKGNIINMVAT 144 (257)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-CCCcEEEEECch
Confidence 236899999877532 121 1111 23445543 344445555443 356788887753
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.046 Score=50.74 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++..+.++.... .++.. ..| +.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 73 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGT-----AIAL----LDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIG 73 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHH
Confidence 46899999999999999999999874 2444 4566666665555554321 12221 111 222
Q ss_pred -------ccCCCcEEEEeCCcC-C-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -------LFEDAEWALLIGAKP-R-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -------al~dADiVIi~~g~~-~-k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.. . .+- .+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 74 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 145 (262)
T 1zem_A 74 TVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTASM 145 (262)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 223789999988753 2 121 111 123444543 344445555543 35788888753
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0023 Score=61.94 Aligned_cols=114 Identities=12% Similarity=0.016 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c----c
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----Y 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~----~ 167 (405)
+.++|.|+||+|++|++++..|+..|. .|.+ .+++.+........+.. . .++.+ ..| + .
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~-~----~~~~~~~~Dl~d~~~~~ 73 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-----TVKG----YSLTAPTVPSLFETARV-A----DGMQSEIGDIRDQNKLL 73 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCSSSSCHHHHTTT-T----TTSEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-----eEEE----EeCCCcccchhhHhhcc-C----CceEEEEccccCHHHHH
Confidence 357999999999999999999998764 2433 23332222212111110 0 01111 111 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 eal~d--ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+++++ .|+||.+++.+... ..+....+..|+.-...+.+.+.+. +....+|.++-
T Consensus 74 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS 132 (357)
T 1rkx_A 74 ESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV-GGVKAVVNITS 132 (357)
T ss_dssp HHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-CCCCEEEEECC
T ss_pred HHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEecC
Confidence 34444 89999988753210 0122345677888788888888775 23456776664
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.068 Score=49.89 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea--- 169 (405)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... . .++.. ..| +.+.
T Consensus 21 ~k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~v~~ 88 (267)
T 1vl8_A 21 GRVALVTGGSRGLGFGIAQGLAEAGC-----SVVV----ASRNLEEASEAAQKLTEKY-G--VETMAFRCDVSNYEEVKK 88 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-C--CeEEEEEcCCCCHHHHHH
Confidence 46899999999999999999999874 2444 4566666665555552111 1 11211 111 2221
Q ss_pred --------cCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 --------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|...... .+. ...+..|..- .+...+.+.+. ..+.||+++--
T Consensus 89 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 159 (267)
T 1vl8_A 89 LLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES--DNPSIINIGSL 159 (267)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC--SSCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEECCc
Confidence 237899999887643211 111 1234455433 34444444442 35677777653
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.018 Score=57.43 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++||+|+||+|.+|..+...|...+.
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~hp~ 44 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKHPE 44 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSS
T ss_pred CccEEEEECCCChHHHHHHHHHHcCCC
Confidence 458999999999999999998777553
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.059 Score=45.25 Aligned_cols=96 Identities=19% Similarity=0.255 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-Ccc-----cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPY-----EL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~~-----ea 169 (405)
..+|.|+|+ |.+|..++..|...+. ++.+ +|.++++++... +. .. .+.... .+. ..
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~-----~v~v----id~~~~~~~~~~----~~--g~--~~i~gd~~~~~~l~~a~ 68 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDI-----PLVV----IETSRTRVDELR----ER--GV--RAVLGNAANEEIMQLAH 68 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHHH----HT--TC--EEEESCTTSHHHHHHTT
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHH----Hc--CC--CEEECCCCCHHHHHhcC
Confidence 358999995 9999999999998765 3554 566666655322 11 11 122211 111 23
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-ch
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PC 225 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-P~ 225 (405)
+.+||+||++.+.. ..|..+ +..+++. +|+..+|.-.| |-
T Consensus 69 i~~ad~vi~~~~~~-----------~~n~~~----~~~a~~~-~~~~~iiar~~~~~ 109 (140)
T 3fwz_A 69 LECAKWLILTIPNG-----------YEAGEI----VASARAK-NPDIEIIARAHYDD 109 (140)
T ss_dssp GGGCSEEEECCSCH-----------HHHHHH----HHHHHHH-CSSSEEEEEESSHH
T ss_pred cccCCEEEEECCCh-----------HHHHHH----HHHHHHH-CCCCeEEEEECCHH
Confidence 67899999874321 234332 3345555 37776665554 53
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.034 Score=54.68 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=22.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
++|+||+|+||+|.+|..++..|...+
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p 28 (350)
T 2ep5_A 2 ADKIKVSLLGSTGMVGQKMVKMLAKHP 28 (350)
T ss_dssp CCCEEEEEESCSSHHHHHHHHHHTTCS
T ss_pred CCCcEEEEECcCCHHHHHHHHHHHhCC
Confidence 456899999999999999999877653
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0092 Score=56.02 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .+++.++++..+.++.. ++.. ..| +.+
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~Dv~d~~~v~~ 90 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGA-----IVGL----HGTREDKLKEIAADLGK-------DVFVFSANLSDRKSIKQ 90 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCS-------SEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCC-------ceEEEEeecCCHHHHHH
Confidence 46899999999999999999999875 2444 45666666655444321 1111 111 222
Q ss_pred -------ccCCCcEEEEeCCcCCC-C--CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k-~--g~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|.... + ..+. ...+..|..- .+.+.+.+.+. ..+.||+++--.
T Consensus 91 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~Iv~isS~~ 162 (266)
T 3grp_A 91 LAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR--RYGRIINITSIV 162 (266)
T ss_dssp HHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCC-
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcEEEEECCHH
Confidence 22378999998875431 1 1111 1234455443 55566666653 467888877543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.12 Score=48.16 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .++.. ..| +.+
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 87 (273)
T 1ae1_A 21 GTTALVTGGSKGIGYAIVEELAGLGA-----RVYT----CSRNEKELDECLEIWREKG----LNVEGSVCDLLSRTERDK 87 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHH
Confidence 46899999999999999999999874 2444 4566666665555554321 11221 111 121
Q ss_pred -------cc-CCCcEEEEeCCcCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 -------LF-EDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -------al-~dADiVIi~~g~~~k-~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+ ...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. ..+.||+++...
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~~ 160 (273)
T 1ae1_A 88 LMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSSIA 160 (273)
T ss_dssp HHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECCGG
T ss_pred HHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCHh
Confidence 12 578999998875421 11 111 123344533 344444555553 457888887643
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.072 Score=49.46 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.+++.|+||+|.||.+++..|++.|. .+.+. .+++.+.++..+.++.+.. .++... .| +.+
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-----~vv~~---~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~ 70 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-----NIVIN---YARSKKAALETAEEIEKLG----VKVLVVKANVGQPAKIK 70 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHH
Confidence 346899999999999999999999875 24431 2556666666666655322 122221 11 222
Q ss_pred --------ccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 --------LFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+..-|++|..+|... .+- .+.. ..+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS 141 (258)
T 3oid_A 71 EMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN--GGGHIVSISS 141 (258)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECc
Confidence 1235699999887532 111 1111 23445533 344455555553 4677777764
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.023 Score=52.37 Aligned_cols=115 Identities=12% Similarity=0.040 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .++ +.+.++....++.... .++.+. .| +.+
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~ 73 (261)
T 1gee_A 7 GKVVVITGSSTGLGKSMAIRFATEKA-----KVVV----NYRSKEDEANSVLEEIKKVG----GEAIAVKGDVTVESDVI 73 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EcCCChHHHHHHHHHHHhcC----CceEEEECCCCCHHHHH
Confidence 46899999999999999999999774 2443 344 4455554544443321 122221 11 122
Q ss_pred -cc-------CCCcEEEEeCCcCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -LF-------EDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -al-------~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+ .+.|+||..+|...... .+. ...+..|.. +.+.+.+.+.+. +..+.||+++--
T Consensus 74 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~~iv~isS~ 146 (261)
T 1gee_A 74 NLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN-DIKGTVINMSSV 146 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhC-CCCCEEEEeCCH
Confidence 12 27899999887542111 111 123444533 344444555553 225778887753
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.03 Score=57.05 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=66.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC------------CcceEE
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP------------LLREVK 161 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~------------~~~~v~ 161 (405)
.++++|.|+||+|++|++++..|+..+-.+. .|.+ .+++.+...+. ..+.+.... ...++.
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~----l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 143 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLIC----LVRAESDEDAR-RRLEKTFDSGDPELLRHFKELAADRLE 143 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEE----EECSSSHHHHH-HHHHGGGCSSCHHHHHHHHHHHTTTEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEE----EECCCCcHHHH-HHHHHHHHhcchhhhhhhhhhccCceE
Confidence 4578999999999999999999998622111 2433 23332222111 111111100 001333
Q ss_pred EecCc-------------ccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 162 IGINP-------------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 162 i~~~~-------------~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+...+ .+.++++|+||.+++.... ....+.+..|+.-...+++.+.+. +.. .+|.++
T Consensus 144 ~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~~V~iS 213 (478)
T 4dqv_A 144 VVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTT-KLK-PFTYVS 213 (478)
T ss_dssp EEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSS-SCC-CEEEEE
T ss_pred EEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhC-CCC-eEEEEe
Confidence 32221 2345689999998875322 333356778888888888888774 233 344444
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.015 Score=54.02 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc----ccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----LFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----al~ 171 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.+.. .-+..-..+.+ .++
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~D~~d~~~v~~~~~ 78 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGA-----TVAI----ADLDVMAAQAVVAGLENGG----FAVEVDVTKRASVDAAMQ 78 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTCTTCC----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhcCC----eEEEEeCCCHHHHHHHHH
Confidence 46899999999999999999999875 2444 4555566554444332210 00111111222 222
Q ss_pred -------CCcEEEEeCCcCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 -------DAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 -------dADiVIi~~g~~~k-~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
..|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. +..+.||+++-
T Consensus 79 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 146 (263)
T 3ak4_A 79 KAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLAS-NTKGVIVNTAS 146 (263)
T ss_dssp HHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECC
T ss_pred HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEEecc
Confidence 78999998875421 11 111 123445543 334444555443 22567777764
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.035 Score=51.44 Aligned_cols=115 Identities=16% Similarity=0.031 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhh-HHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~-l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++.+. ++....++.... . .++... .| +.+
T Consensus 4 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~v~ 71 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGLGIATALAAQGA-----DIVL----NGFGDAAEIEKVRAGLAAQH-G--VKVLYDGADLSKGEAVR 71 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----ECCSCHHHHHHHHHHHHHHH-T--SCEEEECCCTTSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCC-----EEEE----EeCCcchHHHHHHHHHHhcc-C--CcEEEEECCCCCHHHHH
Confidence 46899999999999999999999875 2444 3454444 554444443210 0 112111 11 222
Q ss_pred --------ccCCCcEEEEeCCcCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 --------LFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~k-~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.... +- .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 72 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 143 (260)
T 1x1t_A 72 GLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ--GFGRIINIASA 143 (260)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEECcH
Confidence 12378999998875431 11 111 123445544 455555666553 35788888754
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0066 Score=60.00 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
+|+||+|+||+|.+|..++..|...+
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~ 33 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHP 33 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999998765
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0039 Score=55.38 Aligned_cols=114 Identities=17% Similarity=0.120 Sum_probs=64.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC---CC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~---dA 173 (405)
++|.|+||+|.+|.+++..|+.. .+.+ .+++.++++....++.. . ....++.-.....+.++ +.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~-------~V~~----~~r~~~~~~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH-------DLLL----SGRRAGALAELAREVGA-R-ALPADLADELEAKALLEEAGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS-------EEEE----ECSCHHHHHHHHHHHTC-E-ECCCCTTSHHHHHHHHHHHCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC-------CEEE----EECCHHHHHHHHHhccC-c-EEEeeCCCHHHHHHHHHhcCCC
Confidence 47999999999999999998875 1443 45665665544433321 0 00000000001122333 78
Q ss_pred cEEEEeCCcCCCC------CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 174 EWALLIGAKPRGP------GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 174 DiVIi~~g~~~k~------g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
|+||..+|..... ..+-...+..|..-...+.+.+.+. ..+.||+++-..
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~iv~~sS~~ 123 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ--KGARAVFFGAYP 123 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE--EEEEEEEECCCH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc--CCcEEEEEcChh
Confidence 9999988754211 1122335667776666666666432 356788887653
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.014 Score=54.01 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc-------
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY------- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~------- 167 (405)
+.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++..+.++.... .-+..-..+.
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~D~~~~~~~~~~~ 74 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGA-----KVVI----VDRDKAGAERVAGEIGDAA----LAVAADISKEADVDAAV 74 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTE----EEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhCCce----EEEEecCCCHHHHHHHH
Confidence 457899999999999999999999875 2444 4667677766655542211 0011111111
Q ss_pred ----cccCCCcEEEEeCCcCCCCC----Cchh---hhHHhhH----HHHHHHHHHHHhhc--CCCeEEEEeCCc
Q 015501 168 ----ELFEDAEWALLIGAKPRGPG----MERA---GLLDING----QIFAEQGKALNAVA--SRNVKVIVVGNP 224 (405)
Q Consensus 168 ----eal~dADiVIi~~g~~~k~g----~~r~---~ll~~N~----~i~~~i~~~i~~~a--~p~a~vIvvtNP 224 (405)
+.+...|++|..+|....++ .+.. ..+..|. .+.+.+.+.+.+.. +..+.||+++-.
T Consensus 75 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~ 148 (261)
T 3n74_A 75 EAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAST 148 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred HHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCch
Confidence 12236799999887543222 1111 2234443 33555555555532 125677777754
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.015 Score=57.12 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=22.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
++|+||+|+||+|.||..++..|...+
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p 28 (345)
T 2ozp_A 2 TGKKTLSIVGASGYAGGEFLRLALSHP 28 (345)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHTCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHcCC
Confidence 346899999999999999999888654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.12 Score=48.23 Aligned_cols=117 Identities=13% Similarity=0.083 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecccc----------chhhhHHHHHHHhhhhcCCCcceEEE-ec
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE----------RSLQALEGVAMELEDSLFPLLREVKI-GI 164 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d----------~~~~~l~g~a~DL~d~~~~~~~~v~i-~~ 164 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ ++.+ .+.+.++....++.+.. . ++.. ..
T Consensus 13 gk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ 81 (278)
T 3sx2_A 13 GKVAFITGAARGQGRAHAVRLAADGA-----DIIA--VDLCDQIASVPYPLATPEELAATVKLVEDIG-S---RIVARQA 81 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-C---CEEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEE--EecccccccccccccchHHHHHHHHHHHhcC-C---eEEEEeC
Confidence 46899999999999999999999875 2443 2222 11455554544444322 1 2222 11
Q ss_pred C--ccc----cc-------CCCcEEEEeCCcCC-CCCCc-hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 165 N--PYE----LF-------EDAEWALLIGAKPR-GPGME-RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 165 ~--~~e----al-------~dADiVIi~~g~~~-k~g~~-r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
| +.+ .+ ...|++|..+|... .+..+ -...+..|.. +++.+.+.+.+. +..+.||+++--
T Consensus 82 D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~ 159 (278)
T 3sx2_A 82 DVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQ-GTGGSIVLISSS 159 (278)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEECCG
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEEccH
Confidence 1 222 22 37899999887542 11111 1123445533 445555556664 246888888753
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0034 Score=60.14 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc---ccCCCCCceEEEeccccch-----hhhHHHHHHHhhhhcCCCcceEEEe-cC--
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG---EVLGPDQPIALKLLGSERS-----LQALEGVAMELEDSLFPLLREVKIG-IN-- 165 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~---~~~~~d~~i~L~l~~~d~~-----~~~l~g~a~DL~d~~~~~~~~v~i~-~~-- 165 (405)
|||.|+||+|++|++++..|+.. +.... .+.+ .++. .+.+. ++.. ..++.+. .|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~----~~r~~~~~~~~~~~----~~~~-----~~~~~~~~~Dl~ 65 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIV----LDSLTYAGNRANLA----PVDA-----DPRLRFVHGDIR 65 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEE----EECCCTTCCGGGGG----GGTT-----CTTEEEEECCTT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEE----EECCCccCchhhhh----hccc-----CCCeEEEEcCCC
Confidence 58999999999999999999984 41001 2332 2221 11111 1111 0122221 11
Q ss_pred ----cccccCCCcEEEEeCCcCCCCC---CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 166 ----PYELFEDAEWALLIGAKPRGPG---MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 166 ----~~eal~dADiVIi~~g~~~k~g---~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..+++.++|+||.+++... +. .+....+..|..-...+.+.+.+.. -..+|.++
T Consensus 66 d~~~~~~~~~~~d~Vih~A~~~~-~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~--~~~~v~~S 126 (337)
T 1r6d_A 66 DAGLLARELRGVDAIVHFAAESH-VDRSIAGASVFTETNVQGTQTLLQCAVDAG--VGRVVHVS 126 (337)
T ss_dssp CHHHHHHHTTTCCEEEECCSCCC-HHHHHHCCHHHHHHHTHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred CHHHHHHHhcCCCEEEECCCccC-chhhhhCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEec
Confidence 1245678999999877432 11 1223456788888888888888752 23566555
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.013 Score=55.30 Aligned_cols=116 Identities=22% Similarity=0.202 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc--------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... .-+..-..+.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~d~~~v~~~~~ 94 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGY-----GVAL----AGRRLDALQETAAEIGDDA----LCVPTDVTDPDSVRALFT 94 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTSCC----EEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCe----EEEEecCCCHHHHHHHHH
Confidence 35788899999999999999999875 2444 4666677666655553111 0011101111
Q ss_pred ---cccCCCcEEEEeCCcCCC--CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ---ELFEDAEWALLIGAKPRG--PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ---eal~dADiVIi~~g~~~k--~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+...+.+.||+++--
T Consensus 95 ~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~ 165 (272)
T 4dyv_A 95 ATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSI 165 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCS
T ss_pred HHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECch
Confidence 222378999998876322 21 111 123445543 3555666666642125788888754
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0039 Score=58.62 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC--Cc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--AD 174 (405)
|||.|+||+|++|++++..|+ .+. ++.. .+++... ...|+.|.. ...+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~-----~V~~----~~r~~~~---~~~D~~d~~-----------~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVG-----NLIA----LDVHSKE---FCGDFSNPK-----------GVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTS-----EEEE----ECTTCSS---SCCCTTCHH-----------HHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCC-----eEEE----ecccccc---ccccCCCHH-----------HHHHHHHhcCCC
Confidence 589999999999999999998 553 2433 2332210 111211110 11234444 99
Q ss_pred EEEEeCCcCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k--~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||.+++.... ...+.......|......+.+.+.+. + .++|.++-
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~~~v~~SS 104 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-G--AWVVHYST 104 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-T--CEEEEEEE
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CcEEEEec
Confidence 99998774321 11233456678888888888888774 2 36666653
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.1 Score=49.04 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEec-C--cc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGI-N--PY---- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~~-~--~~---- 167 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .++ +.+.++..+.++.... ..++.... | +.
T Consensus 25 ~k~~lVTGas~GIG~~ia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~ 92 (281)
T 3v2h_A 25 TKTAVITGSTSGIGLAIARTLAKAGA-----NIVL----NGFGAPDEIRTVTDEVAGLS---SGTVLHHPADMTKPSEIA 92 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----ECCCCHHHHHHHHHHHHTTC---SSCEEEECCCTTCHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCChHHHHHHHHHHhhcc---CCcEEEEeCCCCCHHHHH
Confidence 36899999999999999999999875 2444 344 3455555555554321 11222211 1 11
Q ss_pred -------cccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 -------ELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 -------eal~dADiVIi~~g~~~k~g---~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|...... .+.. ..+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 93 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 164 (281)
T 3v2h_A 93 DMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK--GWGRIINIASA 164 (281)
T ss_dssp HHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECCc
Confidence 12337899999887643211 1111 23445533 445555555653 45778887754
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=95.71 E-value=0.023 Score=52.49 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc------
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------ 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e------ 168 (405)
+.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+.++..+.++.+... .+..-..+.+
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~----~~~~Dv~d~~~v~~~~ 74 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGA-----KVIG----TATSESGAQAISDYLGDNGK----GMALNVTNPESIEAVL 74 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHGGGEE----EEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcccce----EEEEeCCCHHHHHHHH
Confidence 346899999999999999999999875 2444 46666666655555543210 0111111111
Q ss_pred -----ccCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -----LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -----al~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 75 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 143 (248)
T 3op4_A 75 KAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK--RQGRIINVGSV 143 (248)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcch
Confidence 2237899999887643211 111 123445533 444555555553 46788888743
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.015 Score=53.33 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC--ccc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PYE----- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--~~e----- 168 (405)
++++.|+||+|.||.+++..|+..|. .+.+ .+++.++++....++.... ..+..| +.+
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~------~~~~~D~~~~~~v~~~ 67 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-----QVSM----MGRRYQRLQQQELLLGNAV------IGIVADLAHHEDVDVA 67 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGE------EEEECCTTSHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhcCCc------eEEECCCCCHHHHHHH
Confidence 46899999999999999999999875 2444 4666677766655553211 011111 221
Q ss_pred ------ccCCCcEEEEeCCcCC-CC--CCch---hhhHHhhHHHH----HHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 ------LFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQIF----AEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 ------al~dADiVIi~~g~~~-k~--g~~r---~~ll~~N~~i~----~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+...|++|..+|... .+ ..+. ...+..|..-. +.+.+.+.+ .++.||+++-
T Consensus 68 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~~~~iv~isS 135 (235)
T 3l6e_A 68 FAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGE---RGGVLANVLS 135 (235)
T ss_dssp HHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCEEEEEECC
T ss_pred HHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH---cCCEEEEEeC
Confidence 2236799999887532 11 1121 23455565443 444444443 2357777664
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.059 Score=52.04 Aligned_cols=118 Identities=8% Similarity=-0.011 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH-HHHHHhhhhcCCCcceEEEecC---cc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN---PY---- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~~~---~~---- 167 (405)
|++|.|+||+|+||++++..|+..|. .|.+ .+++.+... ....++.........++.+... +.
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGY-----EVHG----IKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLT 71 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECC---------------------CCEEECCCCSSCHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHH
Confidence 57899999999999999999998763 2433 233322110 0011111000000012322211 12
Q ss_pred cccCC--CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCC--CeEEEEeCC
Q 015501 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGN 223 (405)
Q Consensus 168 eal~d--ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p--~a~vIvvtN 223 (405)
+++++ .|+||.+++..... ..+....+..|..-...+.+.+.+.. . .+.+|.++-
T Consensus 72 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~~iv~~SS 132 (372)
T 1db3_A 72 RILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG-LEKKTRFYQAST 132 (372)
T ss_dssp HHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEE
T ss_pred HHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCC
Confidence 23443 69999988753211 12233455678777888888887752 3 256666663
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.078 Score=48.94 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... .++.. ..| +.+
T Consensus 14 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 80 (260)
T 2zat_A 14 NKVALVTASTDGIGLAIARRLAQDGA-----HVVV----SSRKQENVDRTVATLQGEG----LSVTGTVCHVGKAEDRER 80 (260)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHH
Confidence 36899999999999999999999874 2444 4566566665555554321 12221 111 111
Q ss_pred c-------cCCCcEEEEeCCcCC--CC--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 L-------FEDAEWALLIGAKPR--GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 a-------l~dADiVIi~~g~~~--k~--g~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
. +...|++|..+|... .+ ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 81 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 152 (260)
T 2zat_A 81 LVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR--GGGSVLIVSSV 152 (260)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEech
Confidence 1 237899999887532 11 1111 123445543 334445555553 45778877743
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.12 Score=48.23 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccc-----------cchhhhHHHHHHHhhhhcCCCcceEEE-e
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-----------ERSLQALEGVAMELEDSLFPLLREVKI-G 163 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~-----------d~~~~~l~g~a~DL~d~~~~~~~~v~i-~ 163 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+. .++.+.++..+.++.+.. .++.. .
T Consensus 15 gk~~lVTGas~gIG~a~a~~la~~G~-----~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 83 (280)
T 3pgx_A 15 GRVAFITGAARGQGRSHAVRLAAEGA-----DIIA--CDICAPVSASVTYAPASPEDLDETARLVEDQG----RKALTRV 83 (280)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT----CCEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--EeccccccccccccccCHHHHHHHHHHHHhcC----CeEEEEE
Confidence 46899999999999999999999875 2443 211 114556665555554322 12221 1
Q ss_pred cC--ccc-----------ccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEE
Q 015501 164 IN--PYE-----------LFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIV 220 (405)
Q Consensus 164 ~~--~~e-----------al~dADiVIi~~g~~~k~g---~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIv 220 (405)
.| +.+ .+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. +..+.||+
T Consensus 84 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~ 162 (280)
T 3pgx_A 84 LDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEA-GNGGSIVV 162 (280)
T ss_dssp CCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEE
Confidence 11 222 2237899999887542111 1111 2344453 3455555666664 24688888
Q ss_pred eCCc
Q 015501 221 VGNP 224 (405)
Q Consensus 221 vtNP 224 (405)
++--
T Consensus 163 isS~ 166 (280)
T 3pgx_A 163 VSSS 166 (280)
T ss_dssp ECCG
T ss_pred Ecch
Confidence 8754
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.089 Score=48.25 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|++.|. .+.+.. ..+.++++..+.++.+.. .++. +..| +.+
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 71 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEGY-----NVAVNY---AGSKEKAEAVVEEIKAKG----VDSFAIQANVADADEVKA 71 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHTT----SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEEe---CCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 46899999999999999999999875 244311 223455555555554322 1121 1111 221
Q ss_pred -------ccCCCcEEEEeCCcCC-CC--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 -------LFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~-k~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+...|++|..+|... .+ ..+.. ..+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS 141 (246)
T 3osu_A 72 MIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ--RSGAIINLSS 141 (246)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcc
Confidence 1237899999887542 11 11211 23455543 444555555653 4678888774
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.078 Score=49.81 Aligned_cols=115 Identities=11% Similarity=0.030 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccccc-
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYELF- 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~eal- 170 (405)
+.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+.++..+.++.... . ++.. ..| +.+.+
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~~~ 98 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA-----HVIL----HGVKPGSTAAVQQRIIASG-G---TAQELAGDLSEAGAGT 98 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSTTTTHHHHHHHHHTT-C---CEEEEECCTTSTTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhcC-C---eEEEEEecCCCHHHHH
Confidence 457899999999999999999999875 2544 4556666666666654322 1 1221 111 11111
Q ss_pred ---------CCCcEEEEeCCcCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 171 ---------EDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 171 ---------~dADiVIi~~g~~~k~g---~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~ 169 (275)
T 4imr_A 99 DLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR--KWGRVVSIGSI 169 (275)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECCH
Confidence 36899999887532211 1211 2344453 3455555666653 46788888753
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0048 Score=58.22 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+||.|+||+|++|++++..|+..|.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~ 27 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN 27 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC
Confidence 67899999999999999999998763
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.031 Score=55.02 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=44.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||+|+||+|.+|..+...|.... |. .+.+.++....+. |....+. . .+..+..-+.+++.++|+|
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~-fp---~~el~~~~s~~~a----G~~~~~~----~--~~~~~~~~~~~~~~~~Dvv 67 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERD-FP---ASAVRFFASARSQ----GRKLAFR----G--QEIEVEDAETADPSGLDIA 67 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-CC---EEEEEEEECTTTS----SCEEEET----T--EEEEEEETTTSCCTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CC---ceEEEEEECcccC----CCceeec----C--CceEEEeCCHHHhccCCEE
Confidence 699999999999999999888764 32 2455444333221 1111111 1 2344443345678999999
Q ss_pred EEeCC
Q 015501 177 LLIGA 181 (405)
Q Consensus 177 Ii~~g 181 (405)
|++.+
T Consensus 68 f~a~~ 72 (344)
T 3tz6_A 68 LFSAG 72 (344)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 98754
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.005 Score=58.13 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.|+||.|+||+|++|++++..|+..|.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~ 29 (308)
T 1qyc_A 3 SRSRILLIGATGYIGRHVAKASLDLGH 29 (308)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhCCC
Confidence 367999999999999999999998763
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.071 Score=48.13 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--C---c-cccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N---P-YELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~---~-~eal 170 (405)
|||.|+|+ |.+|++++..|...+. ++.+ +|.++++++....++ .. .+.... + . ...+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~-----~v~v----id~~~~~~~~l~~~~-----~~--~~i~gd~~~~~~l~~a~i 63 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKY-----GVVI----INKDRELCEEFAKKL-----KA--TIIHGDGSHKEILRDAEV 63 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHHHHHS-----SS--EEEESCTTSHHHHHHHTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHHc-----CC--eEEEcCCCCHHHHHhcCc
Confidence 68999995 9999999999998764 3554 566666665433221 10 111111 1 1 2247
Q ss_pred CCCcEEEEeCC
Q 015501 171 EDAEWALLIGA 181 (405)
Q Consensus 171 ~dADiVIi~~g 181 (405)
.+||+||++-+
T Consensus 64 ~~ad~vi~~~~ 74 (218)
T 3l4b_C 64 SKNDVVVILTP 74 (218)
T ss_dssp CTTCEEEECCS
T ss_pred ccCCEEEEecC
Confidence 89999998743
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.014 Score=53.75 Aligned_cols=110 Identities=13% Similarity=0.033 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH-HHHHhhhhcCCCcceEEEecCccccc-CCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIGINPYELF-EDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g-~a~DL~d~~~~~~~~v~i~~~~~eal-~dA 173 (405)
|++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++. +..|+.+.. ... ...+.+ ...
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~Dl~~~~-~v~-------~~~~~~~~~i 63 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGH-----QIVG----IDIRDAEVIADLSTAEGRKQ-AIA-------DVLAKCSKGM 63 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSSSSEECCTTSHHHHHH-HHH-------HHHTTCTTCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCchhhccccccCCCCHH-HHH-------HHHHHhCCCC
Confidence 45799999999999999999998774 2443 2333222110 223333321 000 001122 567
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
|++|..+|..... ..-...+..|.. +.+...+.+.+. ..+.||+++--.
T Consensus 64 d~lv~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 116 (257)
T 1fjh_A 64 DGLVLCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKG--HQPAAVVISSVA 116 (257)
T ss_dssp SEEEECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECCGG
T ss_pred CEEEECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEECChh
Confidence 9999988764311 112334455543 344444444442 357788887543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.073 Score=50.18 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc-------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e------- 168 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+.++..+.++.........-+..-..+.+
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGY-----SVVI----TGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999875 2444 4666677776666664332111000111111222
Q ss_pred ----ccCCCcEEEEeCCcCCC--CC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ----LFEDAEWALLIGAKPRG--PG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ----al~dADiVIi~~g~~~k--~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.... +- .+.. ..+..|.. +.+.+.+.+.+.....+.||+++--
T Consensus 104 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~ 174 (281)
T 4dry_A 104 AVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSI 174 (281)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 22367999998875322 11 1111 23444533 3555666666642125788888753
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.04 Score=50.84 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cc----c
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----E 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----e 168 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+ +....++.... .++... .| +. +
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~--~~~~~~l~~~~----~~~~~~~~D~~~~~~v~~ 68 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGA-----NIVL----NGFGDP--APALAEIARHG----VKAVHHPADLSDVAQIEA 68 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----ECSSCC--HHHHHHHHTTS----CCEEEECCCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCch--HHHHHHHHhcC----CceEEEeCCCCCHHHHHH
Confidence 36899999999999999999999875 2443 233332 22233333211 122211 11 12 2
Q ss_pred ccC-------CCcEEEEeCCcCCC-CC--Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 LFE-------DAEWALLIGAKPRG-PG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 al~-------dADiVIi~~g~~~k-~g--~~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.++ +.|++|..+|.... +- .+ -...+..|.. ..+.+.+.+.+. ..+.||+++--.
T Consensus 69 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~~ 140 (255)
T 2q2v_A 69 LFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR--NWGRIINIASVH 140 (255)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCGG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEcCch
Confidence 222 79999998875421 11 11 1234555655 566666777663 457888887543
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.014 Score=54.71 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc--------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... ..+..-..+.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~~~~~v~~~~~ 77 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGA-----RVVL----ADLPETDLAGAAASVGRGA----VHHVVDLTNEVSVRALID 77 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECTTSCHHHHHHHHCTTC----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhCCCe----EEEECCCCCHHHHHHHHH
Confidence 46899999999999999999999875 2444 4566666665555442111 0011101111
Q ss_pred ---cccCCCcEEEEeCCcCCC-CC----Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ---ELFEDAEWALLIGAKPRG-PG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ---eal~dADiVIi~~g~~~k-~g----~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.... +. .+. ...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 78 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 147 (271)
T 3tzq_B 78 FTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA--GGGAIVNISSA 147 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEECCH
Confidence 222378999998875421 11 111 123555644 344444555653 56788888754
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.015 Score=54.15 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=52.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhc--ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-----cCccccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPYELF 170 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~--~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-----~~~~eal 170 (405)
||.|+||+|++|++++..|+.. +. .+.+ .+++.+++.... +.. . .+... ....+++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~-----~V~~----~~r~~~~~~~~~----~~~--~--~~~~~D~~d~~~~~~~~ 63 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS-----QIVA----IVRNPAKAQALA----AQG--I--TVRQADYGDEAALTSAL 63 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG-----GEEE----EESCTTTCHHHH----HTT--C--EEEECCTTCHHHHHHHT
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc-----eEEE----EEcChHhhhhhh----cCC--C--eEEEcCCCCHHHHHHHH
Confidence 5899999999999999999986 53 2433 234433332111 110 0 11110 1123578
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+++|+||.+++.. + ..|....+.+.+.+.+. +. ..+|.++
T Consensus 64 ~~~d~vi~~a~~~--~--------~~~~~~~~~l~~a~~~~-~~-~~~v~~S 103 (286)
T 2zcu_A 64 QGVEKLLLISSSE--V--------GQRAPQHRNVINAAKAA-GV-KFIAYTS 103 (286)
T ss_dssp TTCSEEEECC------------------CHHHHHHHHHHHH-TC-CEEEEEE
T ss_pred hCCCEEEEeCCCC--c--------hHHHHHHHHHHHHHHHc-CC-CEEEEEC
Confidence 8999999987642 1 13555666677777664 22 3455544
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.11 Score=47.95 Aligned_cols=114 Identities=9% Similarity=0.005 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++... .++.+. .| +.+
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~ 80 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGA-----KVVI----ADIADDHGQKVCNNIGSP-----DVISFVHCDVTKDEDVR 80 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCChhHHHHHHHHhCCC-----CceEEEECCCCCHHHHH
Confidence 346899999999999999999999874 2444 355545554444444211 012221 11 222
Q ss_pred -cc-------CCCcEEEEeCCcCCC---C--CCc---hhhhHHhhHHHHHHHH----HHHHhhcCCCeEEEEeCCc
Q 015501 169 -LF-------EDAEWALLIGAKPRG---P--GME---RAGLLDINGQIFAEQG----KALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -al-------~dADiVIi~~g~~~k---~--g~~---r~~ll~~N~~i~~~i~----~~i~~~a~p~a~vIvvtNP 224 (405)
.+ ...|++|..+|.... + ..+ -...+..|..-...+. +.+.+. ..+.||+++-.
T Consensus 81 ~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 154 (278)
T 2bgk_A 81 NLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA--KKGSIVFTASI 154 (278)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCCeEEEEeec
Confidence 22 278999988775321 1 111 1234555544333333 444332 45788887754
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.04 Score=51.08 Aligned_cols=117 Identities=9% Similarity=0.077 Sum_probs=68.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc--------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++....++.... .-+..-..+.
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~~~~~v~~~~~ 74 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGA-----EVLL----TGRNESNIARIREEFGPRV----HALRSDIADLNEIAVLGA 74 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGE----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCcc----eEEEccCCCHHHHHHHHH
Confidence 46899999999999999999999875 2544 4666666665554442111 0011101122
Q ss_pred ---cccCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 168 ---ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 168 ---eal~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-...+.||+++-..
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~ 141 (255)
T 4eso_A 75 AAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVA 141 (255)
T ss_dssp HHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChh
Confidence 22347899999887643211 111 23456665555555665555422357888887543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.027 Score=51.19 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc----cc--
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----EL-- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~----ea-- 169 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++... .-+..-..+. +.
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-----~~~~~D~~~~~~~~~~~~ 72 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGA-----KVVA----VTRTNSDLVSLAKECPGI-----EPVCVDLGDWDATEKALG 72 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTC-----EEEECCTTCHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhccCC-----CcEEecCCCHHHHHHHHH
Confidence 46899999999999999999999774 2443 455555554333322110 0011101111 22
Q ss_pred -cCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 -FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 -l~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|+||..+|...... .+ -...+..|..- .+.+.+.+.+. +..+.||+++-.
T Consensus 73 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~~iv~~sS~ 137 (244)
T 1cyd_A 73 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR-GVPGSIVNVSSM 137 (244)
T ss_dssp TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred HcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC-CCCeEEEEEcch
Confidence 235799999887532111 11 11234555444 34444444443 225778888754
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.12 Score=48.46 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecc------------ccchhhhHHHHHHHhhhhcCCCcceEEE-
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG------------SERSLQALEGVAMELEDSLFPLLREVKI- 162 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~------------~d~~~~~l~g~a~DL~d~~~~~~~~v~i- 162 (405)
.+++.|+||+|.||.+++..|++.|. .+.+...+ ..++.+.++..+.++.... .++..
T Consensus 11 ~k~~lVTGas~gIG~aia~~la~~G~-----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 81 (286)
T 3uve_A 11 GKVAFVTGAARGQGRSHAVRLAQEGA-----DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN----RRIVTA 81 (286)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT----CCEEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC----CceEEE
Confidence 46899999999999999999999875 24432111 0112455555554443321 12222
Q ss_pred ec--Cccc-----------ccCCCcEEEEeCCcCCCCC----Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEE
Q 015501 163 GI--NPYE-----------LFEDAEWALLIGAKPRGPG----MERA---GLLDINGQ----IFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 163 ~~--~~~e-----------al~dADiVIi~~g~~~k~g----~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~v 218 (405)
.. .+++ .+...|++|..+|...... .+.. ..+..|.. +.+.+.+.+.+. +..+.|
T Consensus 82 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~i 160 (286)
T 3uve_A 82 EVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAG-GRGGSI 160 (286)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEE
T ss_pred EcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCcEE
Confidence 11 1222 2237899999887543221 1211 23444533 445555666654 246888
Q ss_pred EEeCCch
Q 015501 219 IVVGNPC 225 (405)
Q Consensus 219 IvvtNP~ 225 (405)
|+++--.
T Consensus 161 v~isS~~ 167 (286)
T 3uve_A 161 ILTSSVG 167 (286)
T ss_dssp EEECCGG
T ss_pred EEECchh
Confidence 8887543
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.024 Score=54.22 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--cc----cc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----EL 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~----ea 169 (405)
|||.|+||+|+||++++..|+..|. .+.+.........+.++ ++.... .. ++. +..| +. ++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-----~V~~~~~~~~~~~~~~~----~~~~~~-~~--~~~~~~~Dl~~~~~~~~~ 68 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVIILDNLCNSKRSVLP----VIERLG-GK--HPTFVEGDIRNEALMTEI 68 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCTTHHH----HHHHHH-TS--CCEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEEecCCCcchhHHH----HHHhhc-CC--cceEEEccCCCHHHHHHH
Confidence 5899999999999999999998764 24331100111112221 111110 00 111 1111 22 23
Q ss_pred cC--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 170 FE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 170 l~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++ +.|+||.+++..... ..+..+.+..|+.-...+.+.+.+. + -..+|.++
T Consensus 69 ~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~iv~~S 123 (338)
T 1udb_A 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N-VKNFIFSS 123 (338)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-T-CCEEEEEE
T ss_pred hhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-C-CCeEEEEc
Confidence 33 589999987743100 0122345677888888888888775 2 23555554
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.018 Score=49.14 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..+|.|+|+ |.+|+.++..|...+.
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~ 27 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQ 27 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC
Confidence 358999995 9999999999998664
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.022 Score=56.55 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHHHHH-HHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~-~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (405)
|+||+|+||+|.+|..++. .|.+.++ ..+.++++..+ +. |.. +.+.. . .++.+. ..+.+.++++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~----~~v~i~~~~~~-s~----G~~--v~~~~-g--~~i~~~~~~~~~~~~~~ 66 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDF----DAIRPVFFSTS-QL----GQA--APSFG-G--TTGTLQDAFDLEALKAL 66 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGG----GGSEEEEEESS-ST----TSB--CCGGG-T--CCCBCEETTCHHHHHTC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCC----CeEEEEEEEeC-CC----CCC--ccccC-C--CceEEEecCChHHhcCC
Confidence 5799999999999999999 4444432 12455554443 21 111 11000 0 122222 2234557899
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+||.+.+
T Consensus 67 DvVf~a~g 74 (367)
T 1t4b_A 67 DIIVTCQG 74 (367)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99998754
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.081 Score=49.87 Aligned_cols=114 Identities=17% Similarity=0.069 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C--cc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PY----- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~--~~----- 167 (405)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.... | +.
T Consensus 8 gk~vlVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 74 (280)
T 3tox_A 8 GKIAIVTGASSGIGRAAALLFAREGA-----KVVV----TARNGNALAELTDEIAGGG----GEAAALAGDVGDEALHEA 74 (280)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHTTTT----CCEEECCCCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 46789999999999999999999875 2444 5677777776666664321 1222211 1 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC----Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ------ELFEDAEWALLIGAKPRGPG----MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~~k~g----~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.....+ .+.. ..+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 75 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 146 (280)
T 3tox_A 75 LVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL--GGGSLTFTSSF 146 (280)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCS
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCh
Confidence 12237899999887532111 1111 23444433 444555556553 46778877743
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.044 Score=52.21 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~---- 167 (405)
+.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... + .++.. ..| +.
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~d~~~v~ 107 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGA-----NVAV----AARSPRELSSVTAELGELG-A--GNVIGVRLDVSDPGSCA 107 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHHTTSS-S--SCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhC-C--CcEEEEEEeCCCHHHHH
Confidence 356899999999999999999999875 2544 4666677776666665422 1 12222 111 22
Q ss_pred -------cccCCCcEEEEeCCcCC-CC--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 -------ELFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 -------eal~dADiVIi~~g~~~-k~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+...|++|..+|... .+ ..+.. ..+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 108 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iV~isS 178 (293)
T 3rih_A 108 DAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS--GRGRVILTSS 178 (293)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--SSCEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEeC
Confidence 22346799999877532 22 11211 23455543 344444555554 3567777664
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.05 Score=53.15 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHH-hcccCCCCCceEEEeccccchhhh---------HHHHHHHhhhhcCCC--cce---EE
Q 015501 97 VNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQA---------LEGVAMELEDSLFPL--LRE---VK 161 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~-~~~~~~~d~~i~L~l~~~d~~~~~---------l~g~a~DL~d~~~~~--~~~---v~ 161 (405)
|+|.|+||+|+||++++..|+ ..+. .|.+ .+++... .+.....+.+.. .. ..+ +.
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 72 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNH-----SVVI----VDSLVGTHGKSDHVETRENVARKLQQSD-GPKPPWADRYAA 72 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC-----EEEE----EECCTTTTTCCTTSCCHHHHHHHHHHSC-SSCCTTTTCCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCC-----EEEE----EecCCcccccccccchHHHHHHHHHHhh-ccccccCCceEE
Confidence 599999999999999999999 7663 2433 2222111 121211111111 10 001 22
Q ss_pred E-ecC--c----ccccC--C-CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 162 I-GIN--P----YELFE--D-AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 162 i-~~~--~----~eal~--d-ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+ ..| + .++++ + +|+||.+++..... ..+....+..|+.-...+.+.+.+. +. ..||.++
T Consensus 73 ~~~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~-~~iv~~S 143 (397)
T 1gy8_A 73 LEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KC-DKIIFSS 143 (397)
T ss_dssp EEESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred EEECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CC-CEEEEEC
Confidence 2 122 1 13344 5 99999988743211 0123346778888888888888774 22 3555554
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.021 Score=52.84 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=63.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc---------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY--------- 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~--------- 167 (405)
+++.|+||+|.||.+++..|+..|. .+.+ .+++.++++....++.... .-+..-..+.
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~~~~~v~~~~~~ 67 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIA----TGRRQERLQELKDELGDNL----YIAQLDVRNRAAIEEMLAS 67 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTE----EEEECCTTCHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcCce----EEEEcCCCCHHHHHHHHHH
Confidence 4688999999999999999999874 2444 4566666665544442110 0000000111
Q ss_pred --cccCCCcEEEEeCCcCC--CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 --ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 --eal~dADiVIi~~g~~~--k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 68 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 135 (248)
T 3asu_A 68 LPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER--NHGHIINIGST 135 (248)
T ss_dssp SCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEccc
Confidence 22347899999887642 221 111 123455533 345555556553 45778887754
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.13 Score=48.10 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|+..|. .+.+.. ..+.++++..+.++.... . ++. +..| +.+
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~~---~~~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 98 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGA-----AVALTY---VNAAERAQAVVSEIEQAG-G---RAVAIRADNRDAEAIEQ 98 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEe---CCCHHHHHHHHHHHHhcC-C---cEEEEECCCCCHHHHHH
Confidence 46899999999999999999999875 244311 223345555555554322 1 111 1111 222
Q ss_pred c-------cCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 L-------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 a-------l~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
. +...|++|..+|...... .+ -...+..|..-...+.+.+..+-...+.||+++-.
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~ 167 (271)
T 3v2g_A 99 AIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN 167 (271)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence 2 227899999887643211 11 12235566554444555444442245777777653
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.15 Score=47.00 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... +...++. +..| +.+
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGY-----RVVL----IARSKQNLEKVHDEIMRSN-KHVQEPIVLPLDITDCTKADT 76 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTC-----EEEE----EESCHHHHHHHHHHHHHHC-TTSCCCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-cccCcceEEeccCCCHHHHHH
Confidence 46899999999999999999999875 2444 4667777776666665432 1101111 1111 222
Q ss_pred -------ccCCCcEEEEeCCcCCCC--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 -------LFEDAEWALLIGAKPRGP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|..... ..+.. ..+..|.. +.+.+.+.+.+. ..+.||+++-..
T Consensus 77 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 147 (250)
T 3nyw_A 77 EIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ--KNGYIFNVASRA 147 (250)
T ss_dssp HHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC--
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEEccHH
Confidence 223689999988753211 11111 23444533 455555555553 467888887643
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.07 Score=50.04 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=68.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~--~~e--- 168 (405)
+.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.+.. .++.... | +.+
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~ 91 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGA-----RILI----NGTDPSRVAQTVQEFRNVG----HDAEAVAFDVTSESEII 91 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHHHTT----CCEEECCCCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHH
Confidence 346899999999999999999999875 2444 5677777777766665432 1222211 1 111
Q ss_pred --------ccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 --------LFEDAEWALLIGAKPR-GPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|... ++- .+.. ..+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 92 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iV~isS~ 163 (271)
T 4ibo_A 92 EAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR--GYGKIVNIGSL 163 (271)
T ss_dssp HHHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEccH
Confidence 2236899999887542 221 1211 23445533 445555666553 45788887753
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.11 Score=49.08 Aligned_cols=119 Identities=12% Similarity=0.043 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C--cc----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PY---- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~--~~---- 167 (405)
+.+++.|+||+|.||.+++..|+..|. .+.+ .+.+...+.++....++.+.. .++.+.. | +.
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~-----~V~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~ 116 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA-----DVAI--NYLPAEEEDAQQVKALIEECG----RKAVLLPGDLSDESFAR 116 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--ECCGGGHHHHHHHHHHHHHTT----CCEEECCCCTTSHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--EeCCcchhHHHHHHHHHHHcC----CcEEEEEecCCCHHHHH
Confidence 346899999999999999999999875 2444 223322334443433333221 1222211 1 11
Q ss_pred -------cccCCCcEEEEeCCcCCCCC----Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 -------ELFEDAEWALLIGAKPRGPG----ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 -------eal~dADiVIi~~g~~~k~g----~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.....+ .+ -...+..|..-...+.+.+...-...+.||+++--
T Consensus 117 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~ 187 (294)
T 3r3s_A 117 SLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI 187 (294)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence 12347899999887532111 11 12345667665666666665543345788887753
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.025 Score=60.29 Aligned_cols=117 Identities=10% Similarity=0.020 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc----cccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELF 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~----~eal 170 (405)
++++|.|+||+|+||++++..|+..+. .|.+ .++..........++.........-+..-..+ .+++
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~ 80 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENGY-----DCVV----ADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVF 80 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE----EECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHH
Confidence 467999999999999999999998764 2433 22221111111111211100000001111111 2345
Q ss_pred C--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 171 E--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 171 ~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+ ++|+||.+++..... .....+.+..|+.-...+++.+++. + -..+|.++
T Consensus 81 ~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~-~~~iV~~S 134 (699)
T 1z45_A 81 KEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-N-VSKFVFSS 134 (699)
T ss_dssp HHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-T-CCEEEEEE
T ss_pred HhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEEC
Confidence 5 799999987743210 0112345677888888888888775 2 23555554
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0098 Score=55.09 Aligned_cols=110 Identities=15% Similarity=0.024 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e---- 168 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++.. ++... .| +.+
T Consensus 6 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~ 69 (253)
T 1hxh_A 6 GKVALVTGGASGVGLEVVKLLLGEGA-----KVAF----SDINEAAGQQLAAELGE-------RSMFVRHDVSSEADWTL 69 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCT-------TEEEECCCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHcCC-------ceEEEEccCCCHHHHHH
Confidence 46899999999999999999999874 2444 45665666555444411 11111 11 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-C--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k-~--g~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.... + ..+. ...+..|.. ..+.+.+.+++. . +.||+++--
T Consensus 70 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~-g~iv~isS~ 139 (253)
T 1hxh_A 70 VMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--G-GSIINMASV 139 (253)
T ss_dssp HHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--C-EEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHc--C-CEEEEEcch
Confidence 12356999998875421 1 1121 123455543 445555666553 3 788888754
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.012 Score=55.03 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.++++..+.++. .++.. ..| +.+
T Consensus 6 ~k~vlITGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~ 69 (263)
T 2a4k_A 6 GKTILVTGAASGIGRAALDLFAREGA-----SLVA----VDREERLLAEAVAALE-------AEAIAVVADVSDPKAVEA 69 (263)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTCC-------SSEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhc-------CceEEEEcCCCCHHHHHH
Confidence 46899999999999999999999874 2444 4566666654444332 11111 111 222
Q ss_pred -------ccCCCcEEEEeCCcCCC-C--CCch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k-~--g~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|.... + ..+. ...+..|..-...+.+.+..+-...+.||+++--.
T Consensus 70 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 139 (263)
T 2a4k_A 70 VFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA 139 (263)
T ss_dssp HHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecch
Confidence 12356999998875432 1 1111 23456676655555555554421256788877543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.076 Score=49.65 Aligned_cols=121 Identities=12% Similarity=0.021 Sum_probs=65.3
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE 168 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e 168 (405)
|+.+.+++.|+||+|.||.+++..|+..|. .+.+. ..++.+.++..+.++.... . ++.. ..| +.+
T Consensus 23 m~~~~k~~lVTGas~GIG~aia~~la~~G~-----~Vv~~---~~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dl~~~~ 90 (267)
T 3u5t_A 23 MMETNKVAIVTGASRGIGAAIAARLASDGF-----TVVIN---YAGKAAAAEEVAGKIEAAG-G---KALTAQADVSDPA 90 (267)
T ss_dssp ----CCEEEEESCSSHHHHHHHHHHHHHTC-----EEEEE---ESSCSHHHHHHHHHHHHTT-C---CEEEEECCTTCHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHHhcC-C---eEEEEEcCCCCHH
Confidence 334456899999999999999999999875 24431 1334455555555444321 1 1111 111 222
Q ss_pred -----------ccCCCcEEEEeCCcCC-CCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -----------LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -----------al~dADiVIi~~g~~~-k~g--~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|... .+- .+. ...+..|..-...+.+.+...-...+.||+++--
T Consensus 91 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~ 163 (267)
T 3u5t_A 91 AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS 163 (267)
T ss_dssp HHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence 2236899999887542 221 111 1234566555445554444332235788888753
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.043 Score=50.66 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
.++++|.|+||+|.+|.+++..|++.+
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G 45 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLP 45 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcC
Confidence 456799999999999999999999877
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.075 Score=49.51 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++..+.++
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 50 (278)
T 1spx_A 6 EKVAIITGSSNGIGRATAVLFAREGA-----KVTI----TGRHAERLEETRQQI 50 (278)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHH
Confidence 46899999999999999999999874 2444 456666666555555
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0037 Score=60.46 Aligned_cols=100 Identities=12% Similarity=0.172 Sum_probs=55.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchh--hhHHHHHHHhhhhcCCCcceEEEe-cC--c----
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIG-IN--P---- 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~--~~l~g~a~DL~d~~~~~~~~v~i~-~~--~---- 166 (405)
|||.|+||+|+||++++..|+.. +. .|.+ .+++. +.++.. .++.. ..++.+. .| +
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~-----~V~~----~~r~~~~~~~~~~-~~~~~-----~~~~~~~~~Dl~d~~~~ 65 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQD-----TVVN----IDKLTYAGNLESL-SDISE-----SNRYNFEHADICDSAEI 65 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC-----EEEE----EECCCTTCCGGGG-TTTTT-----CTTEEEEECCTTCHHHH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCC-----eEEE----EecCCCCCchhhh-hhhhc-----CCCeEEEECCCCCHHHH
Confidence 58999999999999999999986 33 2332 22221 111111 11111 0122221 11 1
Q ss_pred ccccC--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 167 YELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 167 ~eal~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
.++++ ++|+||.+++..... ..+....+..|+.-...+.+.+.+.
T Consensus 66 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~ 114 (361)
T 1kew_A 66 TRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY 114 (361)
T ss_dssp HHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 23455 899999988753200 0122345667777777777777664
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.062 Score=50.45 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cc-c--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY-E-- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~-e-- 168 (405)
+.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.+.. + .++.+. .| +. +
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~~v 78 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGI-----MVVL----TCRDVTKGHEAVEKLKNSN-H--ENVVFHQLDVTDPIATM 78 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT-C--CSEEEEECCTTSCHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C--CceEEEEccCCCcHHHH
Confidence 356899999999999999999999875 2544 5667677776666665432 1 122221 11 22 1
Q ss_pred ---------ccCCCcEEEEeCCcC
Q 015501 169 ---------LFEDAEWALLIGAKP 183 (405)
Q Consensus 169 ---------al~dADiVIi~~g~~ 183 (405)
.+...|++|..+|..
T Consensus 79 ~~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 79 SSLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCccc
Confidence 124789999988753
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.13 Score=47.44 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhh--HHHHHHHhhhhcCCCcceEEE-ecC--cccc--
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~--l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea-- 169 (405)
+++.|+||+|.||.+++..|+..|. .+.+ .+++.+. ++....++.... .++.. ..| +.+.
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~ 69 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGF-----DIAV----ADLPQQEEQAAETIKLIEAAD----QKAVFVGLDVTDKANFD 69 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC-----EEEE----EECGGGHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCcchHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHH
Confidence 5789999999999999999999874 2444 3455444 554555554321 12221 111 2222
Q ss_pred ---------cCCCcEEEEeCCcCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 ---------FEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 ---------l~dADiVIi~~g~~~k-~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|.... +- .+. ...+..|.. +.+.+.+.+.+. +..+.||+++--
T Consensus 70 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 142 (258)
T 3a28_C 70 SAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDEL-GVKGKIINAASI 142 (258)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCCEEEEECCG
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCcEEEEECcc
Confidence 2378999998875422 11 111 123445543 445555555553 233777877754
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.04 Score=53.93 Aligned_cols=73 Identities=25% Similarity=0.257 Sum_probs=42.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+|+||+|+||+|.+|..++..|...+. . .+.+..+...++..+ ...+. . .++.+..-+.+.++++|
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~-p---~~elv~i~s~~~~G~----~~~~~----~--~~i~~~~~~~~~~~~vD 67 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREF-P---VDELFLLASERSEGK----TYRFN----G--KTVRVQNVEEFDWSQVH 67 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTC-C---EEEEEEEECTTTTTC----EEEET----T--EEEEEEEGGGCCGGGCS
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCC-C---CEEEEEEECCCCCCC----ceeec----C--ceeEEecCChHHhcCCC
Confidence 468999999999999999998887631 1 133433322121111 00010 0 23444322345678999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+|+++.+
T Consensus 68 vVf~a~g 74 (336)
T 2r00_A 68 IALFSAG 74 (336)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9998754
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.12 Score=48.93 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhh-HHHHHHHhhhhcCCCcceEEE-ecC--ccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~-l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+. .+.....+.... .++.. ..| +++
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~ 113 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGA-----NIAI----AYLDEEGDANETKQYVEKEG----VKCVLLPGDLSDEQHCK 113 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHTTT----CCEEEEESCTTSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCchHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHH
Confidence 46899999999999999999999875 2444 2333232 222222222211 12222 111 221
Q ss_pred --------ccCCCcEEEEeCCcCCCCC----Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 --------LFEDAEWALLIGAKPRGPG----MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~k~g----~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.....+ .+. ...+..|..-...+.+.+..+-...+.||+++--
T Consensus 114 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~ 184 (291)
T 3ijr_A 114 DIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI 184 (291)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence 2236899999877532111 121 2345667666666666665543245677777753
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.02 Score=53.16 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=41.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|..++..|+..+. ++.+ ++.+++++.++.. .+. . +. .+..+++++||+|
T Consensus 1 M~I~iIG-~G~mG~~la~~l~~~g~-----~V~~--~~~~~~~~~~~~~----~~~--g----~~--~~~~~~~~~aDvv 60 (264)
T 1i36_A 1 LRVGFIG-FGEVAQTLASRLRSRGV-----EVVT--SLEGRSPSTIERA----RTV--G----VT--ETSEEDVYSCPVV 60 (264)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-----EEEE--CCTTCCHHHHHHH----HHH--T----CE--ECCHHHHHTSSEE
T ss_pred CeEEEEe-chHHHHHHHHHHHHCCC-----eEEE--eCCccCHHHHHHH----HHC--C----Cc--CCHHHHHhcCCEE
Confidence 5899999 59999999999998764 2443 2222144444322 211 1 11 3456778999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 61 i~~v 64 (264)
T 1i36_A 61 ISAV 64 (264)
T ss_dssp EECS
T ss_pred EEEC
Confidence 9874
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.12 Score=48.78 Aligned_cols=120 Identities=18% Similarity=0.101 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-CcceEEEe-cC--cccc--
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIG-IN--PYEL-- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-~~~~v~i~-~~--~~ea-- 169 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++..+.++...... ...++... .| +.+.
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~ 88 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGS-----NVVI----ASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHH
Confidence 46899999999999999999999774 2444 456666666666666442100 11122222 11 2222
Q ss_pred --c-------CCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhh-c-CCCeEEEEeCCc
Q 015501 170 --F-------EDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAV-A-SRNVKVIVVGNP 224 (405)
Q Consensus 170 --l-------~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i~~~i~~~i~~~-a-~p~a~vIvvtNP 224 (405)
+ ...|+||..+|...... .+. ...+..|..-...+.+.+... . ...+.||+++-.
T Consensus 89 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 160 (303)
T 1yxm_A 89 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP 160 (303)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence 2 25899999887432111 111 223555655444444433221 0 124677777754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.079 Score=45.14 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhH
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL 142 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l 142 (405)
..++|.|+|+ |.+|..++..|...+. ++.+ +|++++++
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g~-----~V~v----id~~~~~~ 55 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSGH-----SVVV----VDKNEYAF 55 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCGGGG
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHH
Confidence 3579999995 9999999999998764 3544 45555554
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.031 Score=55.09 Aligned_cols=74 Identities=9% Similarity=0.088 Sum_probs=51.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
.+..+|+||| +|.+|..++..|... +. ..|.+ .|++.++++..+.++... ....+....+..+++++
T Consensus 127 ~~~~~v~iIG-aG~~a~~~a~al~~~~~~----~~V~V----~~r~~~~a~~la~~~~~~---~g~~~~~~~~~~eav~~ 194 (350)
T 1x7d_A 127 PNARKMALIG-NGAQSEFQALAFHKHLGI----EEIVA----YDTDPLATAKLIANLKEY---SGLTIRRASSVAEAVKG 194 (350)
T ss_dssp TTCCEEEEEC-CSTTHHHHHHHHHHHSCC----CEEEE----ECSSHHHHHHHHHHHTTC---TTCEEEECSSHHHHHTT
T ss_pred ccCCeEEEEC-CcHHHHHHHHHHHHhCCC----cEEEE----EcCCHHHHHHHHHHHHhc---cCceEEEeCCHHHHHhc
Confidence 3468999999 499999998887643 32 23554 577778888777666431 01134555666788999
Q ss_pred CcEEEEe
Q 015501 173 AEWALLI 179 (405)
Q Consensus 173 ADiVIi~ 179 (405)
||+|+++
T Consensus 195 aDiVi~a 201 (350)
T 1x7d_A 195 VDIITTV 201 (350)
T ss_dssp CSEEEEC
T ss_pred CCEEEEe
Confidence 9999986
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.19 Score=46.90 Aligned_cols=116 Identities=12% Similarity=0.121 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-------------hhhhHHHHHHHhhhhcCCCcceEEE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-------------SLQALEGVAMELEDSLFPLLREVKI 162 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-------------~~~~l~g~a~DL~d~~~~~~~~v~i 162 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .++ +.+.++..+.++.... . ++..
T Consensus 11 ~k~~lVTGas~GIG~a~a~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ 77 (277)
T 3tsc_A 11 GRVAFITGAARGQGRAHAVRMAAEGA-----DIIA----VDIAGKLPSCVPYDPASPDDLSETVRLVEAAN-R---RIVA 77 (277)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT-C---CEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCC-----EEEE----EeccccccccccccccCHHHHHHHHHHHHhcC-C---eEEE
Confidence 46899999999999999999999875 2443 232 4455555555444322 1 2221
Q ss_pred e-cC--ccc-----------ccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEE
Q 015501 163 G-IN--PYE-----------LFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 163 ~-~~--~~e-----------al~dADiVIi~~g~~~k~g---~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~v 218 (405)
. .| +++ .+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. +..+.|
T Consensus 78 ~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~i 156 (277)
T 3tsc_A 78 AVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEG-GRGGSI 156 (277)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCCCEE
Confidence 1 11 222 2346899999887543211 1211 2344453 3455666667665 256888
Q ss_pred EEeCCch
Q 015501 219 IVVGNPC 225 (405)
Q Consensus 219 IvvtNP~ 225 (405)
|+++--.
T Consensus 157 v~isS~~ 163 (277)
T 3tsc_A 157 ILISSAA 163 (277)
T ss_dssp EEECCGG
T ss_pred EEEccHh
Confidence 8887543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.015 Score=55.30 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+|+||+|+||+|.+|+.++..+...+- +.|.-. +|++..... ..|+.+.. .....+.++.+..+.++++|
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~------~eLv~~-~d~~~~~~~--G~d~gel~-g~~~gv~v~~dl~~ll~~~D 75 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPD------ATLVGA-LDRTGSPQL--GQDAGAFL-GKQTGVALTDDIERVCAEAD 75 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTT------EEEEEE-BCCTTCTTT--TSBTTTTT-TCCCSCBCBCCHHHHHHHCS
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCC------CEEEEE-EEecCcccc--cccHHHHh-CCCCCceecCCHHHHhcCCC
Confidence 478999999889999999998887532 222111 344322211 12222221 11124455566667788999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+||-.
T Consensus 76 VVIDf 80 (272)
T 4f3y_A 76 YLIDF 80 (272)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99864
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.13 Score=49.77 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecc-ccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~-~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~---- 167 (405)
.++|.|+||+|.||.+++..|+..|. .+.+...+ .+++.++++.....+.... . ++.. ..| +.
T Consensus 5 ~k~vlVTGas~GIG~aia~~L~~~G~-----~V~~~~r~~~~r~~~~~~~l~~~~~~~~-~---~~~~~~~Dvtd~~~v~ 75 (324)
T 3u9l_A 5 KKIILITGASSGFGRLTAEALAGAGH-----RVYASMRDIVGRNASNVEAIAGFARDND-V---DLRTLELDVQSQVSVD 75 (324)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEEESCTTTTTHHHHHHHHHHHHHHT-C---CEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEecCcccccCHHHHHHHHHHHHhcC-C---cEEEEEeecCCHHHHH
Confidence 46799999999999999999999875 24332211 3445555554444333221 1 1111 111 11
Q ss_pred ccc-------CCCcEEEEeCCcCC-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ELF-------EDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 eal-------~dADiVIi~~g~~~-k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+++ ...|++|..+|... .+- .+. ...+..|.. +++...+.+++. ..+.||+++--
T Consensus 76 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~--~~g~iV~isS~ 147 (324)
T 3u9l_A 76 RAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ--KHGLLIWISSS 147 (324)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEecc
Confidence 222 28999999887532 121 111 123455543 444455555663 46778877753
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.018 Score=54.43 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.+||+|||+ |.+|..++..|...+. .|.+ .+++.++++..+.++ .+.+..+..+.++++|+
T Consensus 129 ~~~v~iiGa-G~~g~aia~~L~~~g~-----~V~v----~~r~~~~~~~l~~~~---------g~~~~~~~~~~~~~aDi 189 (275)
T 2hk9_A 129 EKSILVLGA-GGASRAVIYALVKEGA-----KVFL----WNRTKEKAIKLAQKF---------PLEVVNSPEEVIDKVQV 189 (275)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHHTC-----EEEE----ECSSHHHHHHHTTTS---------CEEECSCGGGTGGGCSE
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHc---------CCeeehhHHhhhcCCCE
Confidence 479999995 9999999999998764 2544 566666554333211 13344456678899999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
||.+..
T Consensus 190 Vi~atp 195 (275)
T 2hk9_A 190 IVNTTS 195 (275)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 998744
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.043 Score=52.84 Aligned_cols=119 Identities=14% Similarity=0.034 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e---- 168 (405)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++.... . ..++.+. .| +.+
T Consensus 8 ~k~vlVTGas~gIG~~la~~l~~~G~-----~Vv~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~~~~~v~~ 76 (319)
T 3ioy_A 8 GRTAFVTGGANGVGIGLVRQLLNQGC-----KVAI----ADIRQDSIDKALATLEAEG-S-GPEVMGVQLDVASREGFKM 76 (319)
T ss_dssp TCEEEEETTTSTHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHT-C-GGGEEEEECCTTCHHHHHH
T ss_pred CCEEEEcCCchHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C-CCeEEEEECCCCCHHHHHH
Confidence 46899999999999999999999875 2444 5666677776666554322 1 1122221 11 222
Q ss_pred c-------cCCCcEEEEeCCcCC-CCC--Cc---hhhhHHhhH----HHHHHHHHHHHhh----cCCCeEEEEeCCch
Q 015501 169 L-------FEDAEWALLIGAKPR-GPG--ME---RAGLLDING----QIFAEQGKALNAV----ASRNVKVIVVGNPC 225 (405)
Q Consensus 169 a-------l~dADiVIi~~g~~~-k~g--~~---r~~ll~~N~----~i~~~i~~~i~~~----a~p~a~vIvvtNP~ 225 (405)
+ +...|++|..+|... .+- .+ -...+.-|+ .+++.+.+.+.+. ....+.||+++--.
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a 154 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMA 154 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGG
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccc
Confidence 2 235699999887532 111 11 112344443 3344455555442 01356788777543
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0057 Score=57.86 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCce-EEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i-~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
||||+|||+ |.+|..++..|... . ++ .+ .|++.++++..+..+ + . .+.+..+.++++|
T Consensus 2 ~m~I~iIG~-G~mG~~la~~l~~~-~-----~v~~v----~~~~~~~~~~~~~~~-----g----~-~~~~~~~~~~~~D 60 (276)
T 2i76_A 2 SLVLNFVGT-GTLTRFFLECLKDR-Y-----EIGYI----LSRSIDRARNLAEVY-----G----G-KAATLEKHPELNG 60 (276)
T ss_dssp --CCEEESC-CHHHHHHHHTTC----------CCCE----ECSSHHHHHHHHHHT-----C----C-CCCSSCCCCC---
T ss_pred CceEEEEeC-CHHHHHHHHHHHHc-C-----cEEEE----EeCCHHHHHHHHHHc-----C----C-ccCCHHHHHhcCC
Confidence 468999995 99999999987764 2 23 23 466666655443221 1 1 2334556788999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||++.
T Consensus 61 vVilav 66 (276)
T 2i76_A 61 VVFVIV 66 (276)
T ss_dssp CEEECS
T ss_pred EEEEeC
Confidence 999873
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.031 Score=51.46 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++
T Consensus 7 ~k~vlITGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~ 51 (264)
T 2pd6_A 7 SALALVTGAGSGIGRAVSVRLAGEGA-----TVAA----CDLDRAAAQETVRLL 51 (264)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHH
Confidence 36899999999999999999999874 2444 455555555444433
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0074 Score=57.45 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+|++|.|+||+|++|++++..|+..+.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~ 29 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSH 29 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCC
Confidence 367899999999999999999998763
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.061 Score=50.08 Aligned_cols=115 Identities=14% Similarity=0.005 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++.....+.... .++.+. .| +.+
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~ 99 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAGA-----DVAI----WYNSHPADEKAEHLQKTYG----VHSKAYKCNISDPKSVE 99 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHTC-----EEEE----EESSSCCHHHHHHHHHHHC----SCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcceEEEeecCCHHHHH
Confidence 346899999999999999999998774 2444 3444444443333332211 112111 11 121
Q ss_pred -cc-------CCCcEEEEeCCcCCC--C---CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -LF-------EDAEWALLIGAKPRG--P---GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -al-------~dADiVIi~~g~~~k--~---g~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+ ...|+||..+|.... + ..+. ...+..|..- .+.+.+.+.+. ..+.||+++--
T Consensus 100 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~~~iv~isS~ 173 (279)
T 3ctm_A 100 ETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN--GKGSLIITSSI 173 (279)
T ss_dssp HHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCeEEEECch
Confidence 22 248999998775422 1 1111 1234455443 55666666664 35677777643
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.065 Score=49.12 Aligned_cols=111 Identities=12% Similarity=0.029 Sum_probs=64.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccc-c--chhhhHHHHHHHhhhhcCCCcceEEEecC-------c
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-E--RSLQALEGVAMELEDSLFPLLREVKIGIN-------P 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~-d--~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~ 166 (405)
+++.|+||+|.||.+++..|+..|. .+.+ . + ++.+.++....++ . . .++.-..+ .
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~~~~r~~~~~~~~~~~~-~---~--~~~~~~~~v~~~~~~~ 66 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGY-----TVVC----HDASFADAAERQRFESEN-P---G--TIALAEQKPERLVDAT 66 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-----EEEE----CCGGGGSHHHHHHHHHHS-T---T--EEECCCCCGGGHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----ecCCcCCHHHHHHHHHHh-C---C--CcccCHHHHHHHHHHH
Confidence 5789999999999999999999875 2444 4 4 6666666555444 1 1 01110011 1
Q ss_pred ccccCCCcEEEEeCCcCCC----CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 167 YELFEDAEWALLIGAKPRG----PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k----~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+.+...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 67 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 135 (244)
T 1zmo_A 67 LQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA--GGASVIFITSS 135 (244)
T ss_dssp GGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECCh
Confidence 1223468999998875432 21 111 123455543 344555555553 46788888754
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.028 Score=55.08 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
++||+|+||+|.+|..++..|.+++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~ 30 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERD 30 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999888654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.026 Score=51.37 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecCcc----cc-
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPY----EL- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~~~----ea- 169 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++... ++.. -..+. +.
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~------~~~~~D~~~~~~~~~~~ 71 (244)
T 3d3w_A 7 GRRVLVTGAGKGIGRGTVQALHATGA-----RVVA----VSRTQADLDSLVRECPGI------EPVCVDLGDWEATERAL 71 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTC------EEEECCTTCHHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHcCCC------CEEEEeCCCHHHHHHHH
Confidence 46899999999999999999998774 2443 355555555433332110 1111 01111 12
Q ss_pred --cCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 --FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 --l~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+...|+||..+|...... .+ -...+..|..- .+...+.+.+. +..+.||+++-..
T Consensus 72 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~~ 138 (244)
T 3d3w_A 72 GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR-GVPGAIVNVSSQC 138 (244)
T ss_dssp TTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCGG
T ss_pred HHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEeCchh
Confidence 235799999877543111 11 12334555444 34444444443 2257888887643
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.2 Score=46.74 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch------------hhhHHHHHHHhhhhcCCCcceEEE-
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS------------LQALEGVAMELEDSLFPLLREVKI- 162 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~------------~~~l~g~a~DL~d~~~~~~~~v~i- 162 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .+++ .+.++....++.... .++..
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 76 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGA-----DIAI----CDRCENSDVVGYPLATADDLAETVALVEKTG----RRCISA 76 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCSCCTTCSSCCCCHHHHHHHHHHHHHTT----CCEEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEE----EeCCccccccccccccHHHHHHHHHHHHhcC----CeEEEE
Confidence 46899999999999999999999875 2444 2332 344444444343321 11211
Q ss_pred ecC--ccc-----------ccCCCcEEEEeCCcCC-CC--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEE
Q 015501 163 GIN--PYE-----------LFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVI 219 (405)
Q Consensus 163 ~~~--~~e-----------al~dADiVIi~~g~~~-k~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vI 219 (405)
..| +++ .+...|++|..+|... .+ ..+.. ..+..|.. +.+.+.+.+.+. ..+.||
T Consensus 77 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv 154 (281)
T 3s55_A 77 KVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR--NYGRIV 154 (281)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEE
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEE
Confidence 111 221 2237899999887542 11 12221 23445543 444555556553 467888
Q ss_pred EeCCc
Q 015501 220 VVGNP 224 (405)
Q Consensus 220 vvtNP 224 (405)
+++--
T Consensus 155 ~isS~ 159 (281)
T 3s55_A 155 TVSSM 159 (281)
T ss_dssp EECCG
T ss_pred EECCh
Confidence 88754
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0034 Score=60.28 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCC--CCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--c---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P--- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~--d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~--- 166 (405)
++|+|.|+||+|+||++++..|+..|.... ...|.+ .+++.+.... . . ..++.+. .| +
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~----~~r~~~~~~~----~---~---~~~~~~~~~Dl~d~~~ 78 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTL----IDVFQPEAPA----G---F---SGAVDARAADLSAPGE 78 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEE----EESSCCCCCT----T---C---CSEEEEEECCTTSTTH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEE----EEccCCcccc----c---c---CCceeEEEcCCCCHHH
Confidence 457999999999999999999998762000 002332 2332221110 0 0 0122211 11 1
Q ss_pred -cccc-CCCcEEEEeCCcCCCC-CCchhhhHHhhHHHHHHHHHHHHhhcC---CCeEEEEeC
Q 015501 167 -YELF-EDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVAS---RNVKVIVVG 222 (405)
Q Consensus 167 -~eal-~dADiVIi~~g~~~k~-g~~r~~ll~~N~~i~~~i~~~i~~~a~---p~a~vIvvt 222 (405)
.+++ .++|+||.+++..... ..+....+..|+.-...+.+.+.+... +...||.++
T Consensus 79 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S 140 (342)
T 2hrz_A 79 AEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS 140 (342)
T ss_dssp HHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred HHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence 2344 4899999988743200 012223456677777777777766420 134566555
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.1 Score=48.14 Aligned_cols=114 Identities=9% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC-c-------c
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-P-------Y 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-~-------~ 167 (405)
|+++.|+||+|.||.+++..|++.|. .|.+ .+++.++++.... +....... ..+..+ . .
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~-l~~~~~~~---~~~d~~~v~~~~~~~~ 67 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGH-----TVAC----HDESFKQKDELEA-FAETYPQL---KPMSEQEPAELIEAVT 67 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-----EEEE----CCGGGGSHHHHHH-HHHHCTTS---EECCCCSHHHHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHH-HHhcCCcE---EEECHHHHHHHHHHHH
Confidence 45799999999999999999999875 2444 4566565554332 43211010 001111 1 1
Q ss_pred cccCCCcEEEEeCCcC-C-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ELFEDAEWALLIGAKP-R-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 eal~dADiVIi~~g~~-~-k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.. . .+- .+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 68 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 133 (254)
T 1zmt_A 68 SAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR--KSGHIIFITSA 133 (254)
T ss_dssp HHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCS
T ss_pred HHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECCc
Confidence 2234789999988764 2 221 111 123444533 444555555553 35777777754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.13 Score=51.81 Aligned_cols=136 Identities=11% Similarity=-0.029 Sum_probs=76.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-Cc-----ccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~~-----~ea 169 (405)
.++|.|+|+ |.+|..++..|...+. ++.+ +|.++++++... + ... .+..+. .+ ...
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~-----~vvv----Id~d~~~v~~~~-~---~g~----~vi~GDat~~~~L~~ag 65 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGV-----KMVV----LDHDPDHIETLR-K---FGM----KVFYGDATRMDLLESAG 65 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EECCHHHHHHHH-H---TTC----CCEESCTTCHHHHHHTT
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHH-h---CCC----eEEEcCCCCHHHHHhcC
Confidence 468999995 9999999999998765 3554 566666655322 1 111 122211 11 123
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHHHHHHHHHCCCCCCCceeecc
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALT 248 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t~~~~k~s~~~~~k~ig~gt 248 (405)
+.+||+||++-+. -..-..++..+++.. |+..||+-+ |+-+ ...+. ..+ . ..+| .-+
T Consensus 66 i~~A~~viv~~~~---------------~~~n~~i~~~ar~~~-p~~~Iiara~~~~~--~~~L~-~~G-a-d~Vi-~~~ 123 (413)
T 3l9w_A 66 AAKAEVLINAIDD---------------PQTNLQLTEMVKEHF-PHLQIIARARDVDH--YIRLR-QAG-V-EKPE-RET 123 (413)
T ss_dssp TTTCSEEEECCSS---------------HHHHHHHHHHHHHHC-TTCEEEEEESSHHH--HHHHH-HTT-C-SSCE-ETT
T ss_pred CCccCEEEECCCC---------------hHHHHHHHHHHHHhC-CCCeEEEEECCHHH--HHHHH-HCC-C-CEEE-Ccc
Confidence 7899999987432 122334455566664 886666655 4533 22232 342 3 1333 223
Q ss_pred hhhHHHHHHHHHHHhCCCCCCce
Q 015501 249 RLDENRAKCQLALKAGVFYDKVS 271 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~ 271 (405)
..-+.++-..+-..+|+++..+.
T Consensus 124 ~~~a~~la~~~L~~lg~~~~~~~ 146 (413)
T 3l9w_A 124 FEGALKTGRLALESLGLGPYEAR 146 (413)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH
Confidence 33345666666667777776664
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.21 Score=47.09 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecccc-chhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d-~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.||.+++..|+..|. .|.+ .+ ++.+.++..+.++.
T Consensus 9 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~~r~~~~~~~~~~~l~ 55 (291)
T 1e7w_A 9 VPVALVTGAAKRLGRSIAEGLHAEGY-----AVCL----HYHRSAAEANALSATLN 55 (291)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EcCCCHHHHHHHHHHHh
Confidence 46899999999999999999999875 2444 45 66666665655554
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.011 Score=54.76 Aligned_cols=45 Identities=22% Similarity=0.079 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D 148 (405)
+.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+.++..+.+
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~ 50 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-----TVLG----LDLKPPAGEEPAAE 50 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESSCC--------
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHH
Confidence 346899999999999999999999875 2444 34554555444433
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.023 Score=54.77 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
++||.|+||+|++|++++..|+..+
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g 34 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAH 34 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC
Confidence 4689999999999999999999876
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.23 Score=46.51 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~----- 167 (405)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++... . ++... .| +.
T Consensus 29 ~k~vlVTGas~gIG~aia~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~--~---~~~~~~~Dv~d~~~v~~ 94 (276)
T 2b4q_A 29 GRIALVTGGSRGIGQMIAQGLLEAGA-----RVFI----CARDAEACADTATRLSAY--G---DCQAIPADLSSEAGARR 94 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHTTS--S---CEEECCCCTTSHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhc--C---ceEEEEeeCCCHHHHHH
Confidence 46899999999999999999999874 2444 456666666555555421 1 22221 11 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-C--CCc---hhhhHHhhHH----HHHHHHHHHHhhcCC---CeEEEEeCCc
Q 015501 168 ------ELFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASR---NVKVIVVGNP 224 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~~k-~--g~~---r~~ll~~N~~----i~~~i~~~i~~~a~p---~a~vIvvtNP 224 (405)
+.+...|++|..+|.... + ..+ -...+..|.. +.+.+.+.+.+.. . .+.||+++--
T Consensus 95 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~~~~~g~iV~isS~ 169 (276)
T 2b4q_A 95 LAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSA-SAENPARVINIGSV 169 (276)
T ss_dssp HHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-CSSSCEEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-CCCCCCEEEEECCH
Confidence 123378999998875422 1 111 1123445543 3455556665542 2 1788888754
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.11 Score=48.21 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.||.+++..|+..|. .|.+ .++ +.+.++..+.++.
T Consensus 11 ~k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~ 57 (276)
T 1mxh_A 11 CPAAVITGGARRIGHSIAVRLHQQGF-----RVVV----HYRHSEGAAQRLVAELN 57 (276)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCChHHHHHHHHHHH
Confidence 36899999999999999999999874 2444 355 5566665555554
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.15 Score=46.75 Aligned_cols=111 Identities=12% Similarity=0.012 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh-hhHHHHHHHhhhhcCCCcceEEE-ecC--cccc--
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~-~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea-- 169 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++. +.++. ++.+.. .++.. ..| +.++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~---~~~~~~----~~~~~~~~Dv~~~~~v~ 70 (249)
T 2ew8_A 7 DKLAVITGGANGIGRAIAERFAVEGA-----DIAI----ADLVPAPEAEA---AIRNLG----RRVLTVKCDVSQPGDVE 70 (249)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCCHHHHH---HHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EcCCchhHHHH---HHHhcC----CcEEEEEeecCCHHHHH
Confidence 36899999999999999999999874 2444 34444 44443 222211 11211 111 2222
Q ss_pred ---------cCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 ---------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 ---------l~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|...... .+. ...+..|..- .+.+.+.+++. ..+.||+++-.
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 142 (249)
T 2ew8_A 71 AFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN--GWGRIINLTST 142 (249)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCeEEEEEcch
Confidence 347899999887542111 111 1234555443 45555556653 35788888754
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.13 Score=47.90 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIG-IN--PYE-- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e-- 168 (405)
+.++|.|+||+|.+|.+++..|++.|. .+.+ .++ +.+.++....++.... .++.+. .| +.+
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v 94 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMGL-----KVWI----NYRSNAEVADALKNELEEKG----YKAAVIKFDAASESDF 94 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHH
Confidence 456899999999999999999999875 2443 233 3344444444443321 122221 11 111
Q ss_pred --c-------cCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 --L-------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 --a-------l~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
. +...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 95 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 167 (271)
T 4iin_A 95 IEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS--RFGSVVNVASI 167 (271)
T ss_dssp HHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc--CCCEEEEEech
Confidence 1 237899999887643211 111 123444433 445555666653 45788887753
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.059 Score=49.22 Aligned_cols=74 Identities=8% Similarity=0.062 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCCCcceEEEe-cC--cc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIG-IN--PY---- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~---- 167 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++ .+.++....++.... .++... .| +.
T Consensus 7 ~k~vlVTGasggiG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 73 (258)
T 3afn_B 7 GKRVLITGSSQGIGLATARLFARAGA-----KVGL----HGRKAPANIDETIASMRADG----GDAAFFAADLATSEACQ 73 (258)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCCTTHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----ECCCchhhHHHHHHHHHhcC----CceEEEECCCCCHHHHH
Confidence 46899999999999999999999774 2443 3444 455554544443321 122221 11 22
Q ss_pred cccC-------CCcEEEEeCCc
Q 015501 168 ELFE-------DAEWALLIGAK 182 (405)
Q Consensus 168 eal~-------dADiVIi~~g~ 182 (405)
+.++ +.|+||..+|.
T Consensus 74 ~~~~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 74 QLVDEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp HHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 2222 79999998875
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.023 Score=55.16 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=45.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (405)
.+|+||+|||+ |.+|..++..|...+-+ ++. .+ .|++.++++..+.++ + +..+.+..+.++
T Consensus 2 ~~~~rvgiiG~-G~~g~~~~~~l~~~~~~----~l~-av--~d~~~~~~~~~a~~~-----g----~~~~~~~~~~l~~~ 64 (344)
T 3euw_A 2 SLTLRIALFGA-GRIGHVHAANIAANPDL----ELV-VI--ADPFIEGAQRLAEAN-----G----AEAVASPDEVFARD 64 (344)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHHCTTE----EEE-EE--ECSSHHHHHHHHHTT-----T----CEEESSHHHHTTCS
T ss_pred CCceEEEEECC-cHHHHHHHHHHHhCCCc----EEE-EE--ECCCHHHHHHHHHHc-----C----CceeCCHHHHhcCC
Confidence 35789999995 99999999988874321 122 12 466667666554422 1 234556666777
Q ss_pred CCcEEEEeC
Q 015501 172 DAEWALLIG 180 (405)
Q Consensus 172 dADiVIi~~ 180 (405)
++|+|+++.
T Consensus 65 ~~D~V~i~t 73 (344)
T 3euw_A 65 DIDGIVIGS 73 (344)
T ss_dssp CCCEEEECS
T ss_pred CCCEEEEeC
Confidence 899999863
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.03 Score=52.83 Aligned_cols=114 Identities=10% Similarity=0.050 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc--------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+.++..+.++.... .-+..-..+.
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~d~~~v~~~~~ 95 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGC-----HVLC----ADIDGDAADAAATKIGCGA----AACRVDVSDEQQIIAMVD 95 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHCSSC----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHcCCcc----eEEEecCCCHHHHHHHHH
Confidence 46899999999999999999999875 2444 4666666665555442110 0011111122
Q ss_pred ---cccCCCcEEEEeCCcCC-CC--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ---ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ---eal~dADiVIi~~g~~~-k~--g~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 96 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~ 163 (277)
T 3gvc_A 96 ACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER--GGGAIVNLSSL 163 (277)
T ss_dssp HHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 22337899999887532 11 1121 123455544 345555555553 56888888754
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.017 Score=56.42 Aligned_cols=103 Identities=25% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC-------cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN-------PY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~-------~~ 167 (405)
+++|.|+||+|++|++++..|+..+. .|.+ .+++.+... +.++.+. + .+.+ ..| ..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~----~~R~~~~~~--~~~l~~~--~---~v~~v~~D~l~d~~~l~ 68 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH-----HVRA----QVHSLKGLI--AEELQAI--P---NVTLFQGPLLNNVPLMD 68 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC-----CEEE----EESCSCSHH--HHHHHTS--T---TEEEEESCCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEE----EECCCChhh--HHHHhhc--C---CcEEEECCccCCHHHHH
Confidence 57899999999999999999998663 2433 233333321 1222211 0 1211 122 23
Q ss_pred cccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
++++++|+||..++... . ..|... +.+++.+.+. +.-..+|.+|-..
T Consensus 69 ~~~~~~d~Vi~~a~~~~---~------~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 69 TLFEGAHLAFINTTSQA---G------DEIAIG-KDLADAAKRA-GTIQHYIYSSMPD 115 (352)
T ss_dssp HHHTTCSEEEECCCSTT---S------CHHHHH-HHHHHHHHHH-SCCSEEEEEECCC
T ss_pred HHHhcCCEEEEcCCCCC---c------HHHHHH-HHHHHHHHHc-CCccEEEEeCCcc
Confidence 56889999997654211 1 124333 6677777664 2123666666543
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.12 Score=48.47 Aligned_cols=116 Identities=11% Similarity=0.038 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+.++..+.++.... . .++.. ..| +.
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~~~~~v~~ 94 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGC-----HTVI----ASRSLPRVLTAARKLAGAT-G--RRCLPLSMDVRAPPAVMA 94 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHHHHHHHH-S--SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-C--CcEEEEEcCCCCHHHHHH
Confidence 46899999999999999999998875 2444 4566666665665554321 1 11211 111 12
Q ss_pred ------cccCCCcEEEEeCCcCC-CCC--Cch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 168 ------ELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~~-k~g--~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+.+...|++|..+|... .+- .+. ...+..|..- .+.+.+.+.+. ..+.||+++--.
T Consensus 95 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 166 (277)
T 4fc7_A 95 AVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD--HGGVIVNITATL 166 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH--HCEEEEEECCSH
T ss_pred HHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECchh
Confidence 12237899999887532 111 111 1234455433 33344444442 367888887543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.17 Score=46.77 Aligned_cols=117 Identities=13% Similarity=0.027 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--cccc-
Q 015501 95 KMVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL- 169 (405)
Q Consensus 95 ~~~KI~IIGAaG-~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~ea- 169 (405)
+.+++.|+||+| .+|.+++..|++.|. .+.+ .+++.+.++....++.+.. . .++.+. .| +.+.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~v 88 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA-----DVVI----SDYHERRLGETRDQLADLG-L--GRVEAVVCDVTSTEAV 88 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTC-S--SCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHHHHhcC-C--CceEEEEeCCCCHHHH
Confidence 356899999877 599999999999875 2444 4666667666666664322 1 122222 11 2221
Q ss_pred ----------cCCCcEEEEeCCcCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 ----------FEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 ----------l~dADiVIi~~g~~~k~g---~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. +..+.||+++-.
T Consensus 89 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~iv~~sS~ 162 (266)
T 3o38_A 89 DALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGV-DHGGVIVNNASV 162 (266)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SCCEEEEEECCG
T ss_pred HHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEeCCH
Confidence 236799999887543211 1211 2344453 3444555555553 256778887653
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.11 Score=48.31 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ec--Cccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~--~~~e---- 168 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ .+++.++++..+.++.+.. . ++.. .. .+.+
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~~ 77 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGA-----DLVL----AARTVERLEDVAKQVTDTG-R---RALSVGTDITDDAQVAH 77 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEEcCCCCHHHHHH
Confidence 46899999999999999999999875 2444 4667677776666665432 1 1211 11 1222
Q ss_pred -------ccCCCcEEEEeCCcC--CCCC--Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -------LFEDAEWALLIGAKP--RGPG--MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -------al~dADiVIi~~g~~--~k~g--~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.. .++- .+.. ..+..|.. +.+.+.+.+.+. .+.||+++--
T Consensus 78 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~---~g~iv~isS~ 148 (264)
T 3ucx_A 78 LVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES---KGAVVNVNSM 148 (264)
T ss_dssp HHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH---TCEEEEECCG
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEECcc
Confidence 223689999987652 1221 1111 22444533 344444555552 3677777754
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.0033 Score=57.01 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=41.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..+||+||| +|.+|..++..|...+. ++.+ ++++.+ .+. +... .+... +..++++++|
T Consensus 18 ~~~~I~iIG-~G~mG~~la~~L~~~G~-----~V~~----~~r~~~-~~~----~~~~------g~~~~-~~~~~~~~aD 75 (201)
T 2yjz_A 18 KQGVVCIFG-TGDFGKSLGLKMLQCGY-----SVVF----GSRNPQ-VSS----LLPR------GAEVL-CYSEAASRSD 75 (201)
Confidence 357899999 59999999999987653 2433 455433 221 1110 12233 4567888999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||++.
T Consensus 76 vVilav 81 (201)
T 2yjz_A 76 VIVLAV 81 (201)
Confidence 999873
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.16 Score=46.46 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc-------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e------- 168 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.++++....++. . .-+..-..+.+
T Consensus 5 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~--~----~~~~~D~~~~~~~~~~~~ 69 (245)
T 1uls_A 5 DKAVLITGAAHGIGRATLELFAKEGA-----RLVA----CDIEEGPLREAAEAVG--A----HPVVMDVADPASVERGFA 69 (245)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTTT--C----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHcC--C----EEEEecCCCHHHHHHHHH
Confidence 46899999999999999999999875 2444 3555555554433221 0 00111011122
Q ss_pred ----ccCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHHHHHH----HHHHHhhcCCCeEEEEeCCc
Q 015501 169 ----LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQ----GKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ----al~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i~~~i----~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|...... .+ -...+..|..-...+ .+.+.+. ..+.||+++--
T Consensus 70 ~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 137 (245)
T 1uls_A 70 EALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK--NPGSIVLTASR 137 (245)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEccc
Confidence 1235899999887543211 11 112345565443333 3444432 35788888754
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=95.18 E-value=0.093 Score=49.20 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 28 ~k~vlITGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 73 (286)
T 1xu9_A 28 GKKVIVTGASKGIGREMAYHLAKMGA-----HVVV----TARSKETLQKVVSHCL 73 (286)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 46899999999999999999999874 2444 4666666665555444
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0058 Score=54.16 Aligned_cols=108 Identities=9% Similarity=0.013 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
+|||.|+||+|.+|++++..|+ .|. .+.+ .+++.+. ...|+.+.. .. ....+.+...|+
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g~-----~V~~----~~r~~~~---~~~D~~~~~-~~-------~~~~~~~~~~d~ 61 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KKA-----EVIT----AGRHSGD---VTVDITNID-SI-------KKMYEQVGKVDA 61 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TTS-----EEEE----EESSSSS---EECCTTCHH-HH-------HHHHHHHCCEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CCC-----eEEE----EecCccc---eeeecCCHH-HH-------HHHHHHhCCCCE
Confidence 4689999999999999999998 663 2433 2332210 011111110 00 000011235799
Q ss_pred EEEeCCcCCCCCC---ch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 176 ALLIGAKPRGPGM---ER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 176 VIi~~g~~~k~g~---~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
||.++|....... +. ...+..|..-...+.+.+.+.-...+.+++++-.
T Consensus 62 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~ 116 (202)
T 3d7l_A 62 IVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGI 116 (202)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCG
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcch
Confidence 9988775321111 11 1334566665666666555542123677777653
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.17 Score=47.28 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .++ +.+.++....++.... . ++.. ..| +.+
T Consensus 28 ~k~vlVTGas~gIG~aia~~la~~G~-----~V~~----~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~D~~d~~~v~ 94 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALELAAAGA-----KVAV----NYASSAGAADEVVAAIAAAG-G---EAFAVKADVSQESEVE 94 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCChHHHHHHHHHHHhcC-C---cEEEEECCCCCHHHHH
Confidence 46889999999999999999999875 2443 222 3445555555554321 1 1211 111 222
Q ss_pred --------ccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 --------LFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 --------al~dADiVIi~~g~~~k~g---~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+...|++|..+|...... .+.. ..+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 95 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 165 (269)
T 4dmm_A 95 ALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ--RSGRIINIAS 165 (269)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECc
Confidence 2237899999887643211 1111 23444533 344555555553 4577777774
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.027 Score=53.01 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=64.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~------ 167 (405)
+++.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++... .++.. ..| +.
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~ 87 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-----SLVL----TGRREERLQALAGELSAK-----TRVLPLTLDVRDRAAMSAA 87 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTTT-----SCEEEEECCTTCHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhcC-----CcEEEEEcCCCCHHHHHHH
Confidence 5899999999999999999999874 2444 456666666555555421 11111 111 11
Q ss_pred -----cccCCCcEEEEeCCcCC--CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCe-EEEEeCCc
Q 015501 168 -----ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNV-KVIVVGNP 224 (405)
Q Consensus 168 -----eal~dADiVIi~~g~~~--k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a-~vIvvtNP 224 (405)
+.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+ .||+++--
T Consensus 88 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~~IV~isS~ 159 (272)
T 2nwq_A 88 VDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAH--GAGASIVNLGSV 159 (272)
T ss_dssp HHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CTTCEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeCCc
Confidence 22334699999887643 221 111 123444533 355555666554 235 77777754
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.2 Score=47.49 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecccc----------chhhhHHHHHHHhhhhcCCCcceEEE-ec
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE----------RSLQALEGVAMELEDSLFPLLREVKI-GI 164 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d----------~~~~~l~g~a~DL~d~~~~~~~~v~i-~~ 164 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ ++.+ ++.+.++..+.++.... .++.. ..
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 96 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLAREGA-----DIIA--IDVCKQLDGVKLPMSTPDDLAETVRQVEALG----RRIIASQV 96 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--EecccccccccccccCHHHHHHHHHHHHhcC----CceEEEEC
Confidence 46899999999999999999999875 2443 2221 12455555555554322 12221 11
Q ss_pred C--ccc-----------ccCCCcEEEEeCCcCCCCC----Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEE
Q 015501 165 N--PYE-----------LFEDAEWALLIGAKPRGPG----MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIV 220 (405)
Q Consensus 165 ~--~~e-----------al~dADiVIi~~g~~~k~g----~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIv 220 (405)
| +.+ .+...|++|..+|...... .+.. ..+..|+. +.+.+.+.+.+. ...+.||+
T Consensus 97 Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~Iv~ 175 (299)
T 3t7c_A 97 DVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAG-KRGGSIVF 175 (299)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEE
Confidence 1 221 2237899999877532211 1221 23455533 445555555553 24688888
Q ss_pred eCCc
Q 015501 221 VGNP 224 (405)
Q Consensus 221 vtNP 224 (405)
++--
T Consensus 176 isS~ 179 (299)
T 3t7c_A 176 TSSI 179 (299)
T ss_dssp ECCG
T ss_pred ECCh
Confidence 8754
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.093 Score=48.16 Aligned_cols=118 Identities=10% Similarity=-0.013 Sum_probs=64.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc---
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY--- 167 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~--- 167 (405)
.+.++|.|+||+|.+|.+++..|++.|. .+.+. ..++.+.++....++.... . ++.. ..| +.
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G~-----~v~~~---~~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v 78 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDGF-----RVVAG---CGPNSPRRVKWLEDQKALG-F---DFYASEGNVGDWDST 78 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTTE-----EEEEE---ECTTCSSHHHHHHHHHHTT-C---CCEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE---eCCCHHHHHHHHHHHHhcC-C---eeEEEecCCCCHHHH
Confidence 4467999999999999999999999875 23331 1233344444444443322 1 1111 111 11
Q ss_pred --------cccCCCcEEEEeCCcCCCC---CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 168 --------ELFEDAEWALLIGAKPRGP---GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 168 --------eal~dADiVIi~~g~~~k~---g~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+.+...|++|..+|..... ..+. ...+..|..- .+.+.+.+.+. ..+.||+++-..
T Consensus 79 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 152 (256)
T 3ezl_A 79 KQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER--GWGRIINISSVN 152 (256)
T ss_dssp HHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcchh
Confidence 2223679999988754311 1121 1234555443 55555666664 457888887654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.082 Score=50.23 Aligned_cols=116 Identities=9% Similarity=0.095 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e--- 168 (405)
+.+++.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.... ....++.+ ..| +.+
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~~Dv~d~~~v~ 94 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGA-----QVTI----TGRNEDRLEETKQQILKAG-VPAEKINAVVADVTEASGQD 94 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-CCGGGEEEEECCTTSHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CCCceEEEEecCCCCHHHHH
Confidence 346899999999999999999999875 2444 4566666665555554321 10002222 111 222
Q ss_pred -c-------cCCCcEEEEeCCcCC-CC----CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 -L-------FEDAEWALLIGAKPR-GP----GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 -a-------l~dADiVIi~~g~~~-k~----g~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
. +...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+. . +.||+++-
T Consensus 95 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~-g~IV~isS 166 (297)
T 1xhl_A 95 DIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT--K-GEIVNVSS 166 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--T-CEEEEECC
T ss_pred HHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc--C-CEEEEEcC
Confidence 1 237899999887532 22 1111 123445543 344444555442 3 77777774
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.031 Score=55.56 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=40.7
Q ss_pred CEEEEEcCCCchHHHHHH-HHHhcccCCCCCceEEEeccccchhhhHHHHH-HHhhhhcCCCcceEEEe-cCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVA-MELEDSLFPLLREVKIG-INPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~-~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a-~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (405)
+||+|+||+|.+|..+.. .|.+.+.. .+.+.++.... .|.. .++. .. ...+. ..+.+.++++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~~-----aG~~~~~~~----~~--~~~~~~~~~~~~~~~~ 65 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQ-----IGVPAPNFG----KD--AGMLHDAFDIESLKQL 65 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSS-----TTSBCCCSS----SC--CCBCEETTCHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCC----ceEEEEEeccc-----cCcCHHHhC----CC--ceEEEecCChhHhccC
Confidence 689999999999999998 77776642 13443432211 1111 1111 00 11222 2234668999
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+||++.+
T Consensus 66 Dvvf~a~~ 73 (370)
T 3pzr_A 66 DAVITCQG 73 (370)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99998754
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0041 Score=57.54 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=58.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC--Cc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d--AD 174 (405)
|||.|+||+|++|++++..|+. +. .+.+ .+++.+...++..|+.+. ....+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~-----~V~~----~~r~~~~~~~~~~Dl~~~-----------~~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RH-----EVIK----VYNSSEIQGGYKLDLTDF-----------PRLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TS-----CEEE----EESSSCCTTCEECCTTSH-----------HHHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-CC-----eEEE----ecCCCcCCCCceeccCCH-----------HHHHHHHHhcCCC
Confidence 4899999999999999999985 42 2443 233221100000111100 011233443 99
Q ss_pred EEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||.+++..... ..+....+..|..-...+.+.+.+. ++.+|.++-
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~iv~~SS 107 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI---DSYIVHIST 107 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT---TCEEEEEEE
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEec
Confidence 999987753210 0123345677888888888888774 246666653
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.18 Score=46.49 Aligned_cols=118 Identities=15% Similarity=0.034 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCc--hHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc-
Q 015501 95 KMVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~--VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e- 168 (405)
+.+++.|+||+|. ||.+++..|+..|. .+.+ .+++....+ ...++.... +. .++.+ ..| +.+
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~-~~~~~~~~~-~~-~~~~~~~~D~~~~~~ 73 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-----RLIF----TYAGERLEK-SVHELAGTL-DR-NDSIILPCDVTNDAE 73 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-----EEEE----EESSGGGHH-HHHHHHHTS-SS-CCCEEEECCCSSSHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-----EEEE----ecCchHHHH-HHHHHHHhc-CC-CCceEEeCCCCCHHH
Confidence 3468999999987 99999999999875 2444 233333222 222232211 11 01111 111 122
Q ss_pred ----------ccCCCcEEEEeCCcCC-----CCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ----------LFEDAEWALLIGAKPR-----GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ----------al~dADiVIi~~g~~~-----k~g--~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|... .+- .+. ...+..|..-...+.+.+..+-.+.+.||+++-.
T Consensus 74 v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~ 149 (266)
T 3oig_A 74 IETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL 149 (266)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 1236799999877542 111 111 1234556555555666655553346788887754
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.075 Score=49.28 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|+..|. .+.+. .+++.+.++....++.... . ++. +..| +.+
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~~---~~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~~ 75 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGA-----NVVLT---YNGAAEGAATAVAEIEKLG-R---SALAIKADLTNAAEVEA 75 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE---ECSSCHHHHHHHHHHHTTT-S---CCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHHhcC-C---ceEEEEcCCCCHHHHHH
Confidence 46899999999999999999999875 24431 1444455554555554322 1 111 1111 222
Q ss_pred c-------cCCCcEEEEeCCcC--CCCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 L-------FEDAEWALLIGAKP--RGPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 a-------l~dADiVIi~~g~~--~k~g--~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
. +...|++|..+|.. .++- .+. ...+..|..-...+.+.+..+-.+.+.||+++-.
T Consensus 76 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~ 145 (259)
T 3edm_A 76 AISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQ 145 (259)
T ss_dssp HHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred HHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCH
Confidence 1 23679999887643 2221 122 2345667665556666655543235678887753
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.16 Score=42.99 Aligned_cols=101 Identities=17% Similarity=0.104 Sum_probs=56.2
Q ss_pred ccCCCEEEEEcCC---CchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc
Q 015501 93 WKKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (405)
Q Consensus 93 ~~~~~KI~IIGAa---G~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea 169 (405)
+.++.+|+|||++ |.+|+.++..|...|. + + +++++..+.. . .+.+..+..+.
T Consensus 11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~-----~--V--~~vnp~~~~i-------~--------G~~~~~s~~el 66 (138)
T 1y81_A 11 SKEFRKIALVGASKNPAKYGNIILKDLLSKGF-----E--V--LPVNPNYDEI-------E--------GLKCYRSVREL 66 (138)
T ss_dssp ---CCEEEEETCCSCTTSHHHHHHHHHHHTTC-----E--E--EEECTTCSEE-------T--------TEECBSSGGGS
T ss_pred ccCCCeEEEEeecCCCCCHHHHHHHHHHHCCC-----E--E--EEeCCCCCeE-------C--------CeeecCCHHHh
Confidence 4568899999943 9999999999988765 1 2 2233321111 1 12333344455
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHH
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k 234 (405)
..++|+++++-. .+...++++.+.+. +..++++..+.-..-+...+.+
T Consensus 67 ~~~vDlvii~vp----------------~~~v~~v~~~~~~~-g~~~i~~~~~~~~~~l~~~a~~ 114 (138)
T 1y81_A 67 PKDVDVIVFVVP----------------PKVGLQVAKEAVEA-GFKKLWFQPGAESEEIRRFLEK 114 (138)
T ss_dssp CTTCCEEEECSC----------------HHHHHHHHHHHHHT-TCCEEEECTTSCCHHHHHHHHH
T ss_pred CCCCCEEEEEeC----------------HHHHHHHHHHHHHc-CCCEEEEcCccHHHHHHHHHHH
Confidence 568999998732 24445555555553 4666555444434444444433
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.12 Score=47.39 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 14 ~k~vlITGasggiG~~~a~~l~~~G~ 39 (265)
T 1h5q_A 14 NKTIIVTGGNRGIGLAFTRAVAAAGA 39 (265)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999999774
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.15 Score=47.37 Aligned_cols=120 Identities=16% Similarity=0.090 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|+..|. .+.+.. ..+++.+.++..+.++.+.. .++... .| +.+
T Consensus 11 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~~~-r~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 80 (262)
T 3ksu_A 11 NKVIVIAGGIKNLGALTAKTFALESV-----NLVLHY-HQAKDSDTANKLKDELEDQG----AKVALYQSDLSNEEEVAK 80 (262)
T ss_dssp TCEEEEETCSSHHHHHHHHHHTTSSC-----EEEEEE-SCGGGHHHHHHHHHHHHTTT----CEEEEEECCCCSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEEe-cCccCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 46899999999999999999998875 244311 12455566666666665431 122221 11 222
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-.+.+.||+++-..
T Consensus 81 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~ 150 (262)
T 3ksu_A 81 LFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSL 150 (262)
T ss_dssp HHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechh
Confidence 1236899999887543211 111 12355666655555555554322457788887654
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.3 Score=47.04 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecccc-chhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d-~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.||.+++..|+..|. .|.+ .+ ++.+.++..+.++.
T Consensus 46 ~k~~lVTGas~GIG~aia~~La~~G~-----~Vv~----~~~r~~~~~~~~~~~l~ 92 (328)
T 2qhx_A 46 VPVALVTGAAKRLGRSIAEGLHAEGY-----AVCL----HYHRSAAEANALSATLN 92 (328)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCCHHHHHHHHHHHH
Confidence 46899999999999999999999875 2444 35 56666665555554
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.31 Score=45.99 Aligned_cols=119 Identities=15% Similarity=0.215 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----- 167 (405)
.+++.|+||+|.||.+++..|++.|.-. ..+.+ .+++.+.++..+.++.... + ..++.. ..| +.
T Consensus 33 ~k~~lVTGas~GIG~aia~~l~~~G~~~--~~V~~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dv~d~~~v~~ 104 (287)
T 3rku_A 33 KKTVLITGASAGIGKATALEYLEASNGD--MKLIL----AARRLEKLEELKKTIDQEF-P-NAKVHVAQLDITQAEKIKP 104 (287)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHHHTTC--SEEEE----EESCHHHHHHHHHHHHHHC-T-TCEEEEEECCTTCGGGHHH
T ss_pred CCEEEEecCCChHHHHHHHHHHHcCCCC--ceEEE----EECCHHHHHHHHHHHHhhC-C-CCeEEEEECCCCCHHHHHH
Confidence 4689999999999999999999876411 02443 4666677776666665421 1 112221 111 12
Q ss_pred ------cccCCCcEEEEeCCcCC--CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ------ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ------eal~dADiVIi~~g~~~--k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 105 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~ 176 (287)
T 3rku_A 105 FIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK--NSGDIVNLGSI 176 (287)
T ss_dssp HHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECCh
Confidence 22346899999887532 221 121 123445533 445555555553 45777877753
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.24 Score=45.92 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... +. .++.. ..| +.+
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dv~~~~~v~~ 76 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGA-----AVAF----CARDGERLRAAESALRQRF-PG-ARLFASVCDVLDALQVRA 76 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHS-TT-CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-CC-ceEEEEeCCCCCHHHHHH
Confidence 46899999999999999999999875 2444 4666677776666665421 11 11211 111 222
Q ss_pred -------ccCCCcEEEEeCCcCCC-C--CCchh---hhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 -------LFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k-~--g~~r~---~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.... + ..+.. ..+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 77 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 147 (265)
T 3lf2_A 77 FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESR--ADAAIVCVNSL 147 (265)
T ss_dssp HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTEEEEEEEEG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCeEEEEECCc
Confidence 23367999998875321 1 11221 234556443 34444444442 46777777643
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.16 Score=47.11 Aligned_cols=117 Identities=11% Similarity=0.069 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e---- 168 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ + ..++.+.++....++.... . ++.+. .| +.+
T Consensus 26 ~k~vlVTGas~gIG~~la~~l~~~G~-----~v~i-~--~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dl~~~~~~~~ 93 (267)
T 4iiu_A 26 SRSVLVTGASKGIGRAIARQLAADGF-----NIGV-H--YHRDAAGAQETLNAIVANG-G---NGRLLSFDVANREQCRE 93 (267)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE-E--ESSCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE-E--eCCchHHHHHHHHHHHhcC-C---ceEEEEecCCCHHHHHH
Confidence 35899999999999999999999875 2433 1 2344555555555554321 1 12221 11 211
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 -------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -------al~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+...|++|..+|...... .+ -...+..|.. +++.....+.+. ...+.||+++-..
T Consensus 94 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~~ 166 (267)
T 4iiu_A 94 VLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGA-RQGGRIITLSSVS 166 (267)
T ss_dssp HHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCHH
T ss_pred HHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEEcchH
Confidence 1237899999887543211 11 1223455543 333334444433 3578888887543
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.29 Score=44.75 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~ 30 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNL 30 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC
Confidence 346899999999999999999999874
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.22 Score=46.56 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e---- 168 (405)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++ +.++..+.++.+.. .++... .| +.+
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~-~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 96 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARAGA-----HVLA----WGRT-DGVKEVADEIADGG----GSAEAVVADLADLEGAAN 96 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESS-THHHHHHHHHHTTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EcCH-HHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHH
Confidence 46899999999999999999999875 2443 2332 33444445454321 122221 11 222
Q ss_pred ------ccCCCcEEEEeCCcCCCCCC---ch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ------LFEDAEWALLIGAKPRGPGM---ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ------al~dADiVIi~~g~~~k~g~---~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|....... +. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 97 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~ 166 (273)
T 3uf0_A 97 VAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH--GSGRIVTIASM 166 (273)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcch
Confidence 12378999998876432111 11 123444533 445555566654 46788888754
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.12 Score=48.48 Aligned_cols=116 Identities=11% Similarity=0.056 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh-hHHHHHHHhhhhcCCCcceEEE-ecC--cc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKI-GIN--PY--- 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~-~l~g~a~DL~d~~~~~~~~v~i-~~~--~~--- 167 (405)
+.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+ .++..+.++.... .++.. ..| +.
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~ 94 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC-----KVIV----NYANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDI 94 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCchHHHHHHHHHHHHhC----CCeEEEEcCCCCHHHH
Confidence 346899999999999999999999875 2444 233322 2333333343221 11211 111 11
Q ss_pred --------cccCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 168 --------ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 168 --------eal~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+.+...|++|..+|...... .+ -...+..|..-...+.+.+.++-...+.||+++-
T Consensus 95 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 164 (283)
T 1g0o_A 95 VRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 164 (283)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 12346899999887543211 11 1234566666555555555554224577777774
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=94.88 E-value=0.17 Score=47.51 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh-hhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~-~~l~g~a~DL~ 150 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++. ++++..+.++.
T Consensus 23 ~k~~lVTGas~gIG~aia~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~l~ 69 (288)
T 2x9g_A 23 APAAVVTGAAKRIGRAIAVKLHQTGY-----RVVI----HYHNSAEAAVSLADELN 69 (288)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHHTC-----EEEE----EESSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----eEEE----EeCCchHHHHHHHHHHH
Confidence 46899999999999999999999875 2444 34554 55555555553
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.03 Score=55.00 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=41.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC----cccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYEL 169 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----~~ea 169 (405)
.+.|||.|+|| |.||+.++..|... ..+.+ .|++.++++... + ....+.+-.. ..+.
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~~------~~v~~----~~~~~~~~~~~~----~----~~~~~~~d~~d~~~l~~~ 74 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKDE------FDVYI----GDVNNENLEKVK----E----FATPLKVDASNFDKLVEV 74 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTTT------SEEEE----EESCHHHHHHHT----T----TSEEEECCTTCHHHHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHhcC------CCeEE----EEcCHHHHHHHh----c----cCCcEEEecCCHHHHHHH
Confidence 35689999996 99999999988653 13544 355555554321 1 1112222222 2456
Q ss_pred cCCCcEEEEeCC
Q 015501 170 FEDAEWALLIGA 181 (405)
Q Consensus 170 l~dADiVIi~~g 181 (405)
++++|+||.+.+
T Consensus 75 ~~~~DvVi~~~p 86 (365)
T 3abi_A 75 MKEFELVIGALP 86 (365)
T ss_dssp HTTCSEEEECCC
T ss_pred HhCCCEEEEecC
Confidence 789999998754
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0081 Score=56.91 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=59.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh-hhHHHHHHHhhhhcCCCcceEEEe--cCcccccC--
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIG--INPYELFE-- 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~-~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~-- 171 (405)
|||.|+||+|+||++++..|+..|. .+.+ .++.. ...+ .+.... .. ....++ ....++++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-----~V~~----~~r~~~~~~~----~~~~~~-~~-~~~Dl~~~~~~~~~~~~~ 65 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGL-----EVAV----LDNLATGKRE----NVPKGV-PF-FRVDLRDKEGVERAFREF 65 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----ECCCSSCCGG----GSCTTC-CE-ECCCTTCHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-----EEEE----EECCCcCchh----hcccCe-EE-EECCCCCHHHHHHHHHhc
Confidence 5899999999999999999998764 2433 22211 1110 010000 00 000000 01123455
Q ss_pred CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 172 DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 172 dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
++|+||.+++..... ..+....+..|..-...+.+.+.+. + -..+|.++-
T Consensus 66 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~-~~~iv~~SS 117 (311)
T 2p5y_A 66 RPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-G-VEKLVFAST 117 (311)
T ss_dssp CCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-T-CSEEEEEEE
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-C-CCEEEEeCC
Confidence 799999987643210 0122345667877778888887774 2 235665553
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.011 Score=56.29 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+||.|+||+|++|++++..|+..|.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~ 36 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGH 36 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCC
Confidence 4899999999999999999998763
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.08 Score=49.11 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.++|.|+||+|.||.+++..|+..|.
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~ 46 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAGD 46 (253)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 346899999999999999999999874
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.19 Score=46.69 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=62.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c--Cccc--
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPYE-- 168 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~e-- 168 (405)
.+.+++.|+||+|.+|.+++..|+..|. .+.+ .+. ++.+.++....++.... .++.+. . .+.+
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~--~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v 90 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-----AVAV--SHS-ERNDHVSTWLMHERDAG----RDFKAYAVDVADFESC 90 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE--EEC-SCHHHHHHHHHHHHTTT----CCCEEEECCTTCHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--EcC-CchHHHHHHHHHHHhcC----CceEEEEecCCCHHHH
Confidence 3456788999999999999999998875 2433 111 33344444433333221 112111 1 1222
Q ss_pred ---------ccCCCcEEEEeCCcCCC-C--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ---------LFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ---------al~dADiVIi~~g~~~k-~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 91 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS~ 163 (269)
T 3gk3_A 91 ERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER--RFGRIVNIGSV 163 (269)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEeCCh
Confidence 12378999998875421 1 11211 23444533 344444555553 46788888754
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.025 Score=53.44 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++. .++... .| +.+
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~-------~~~~~~~~Dl~d~~~v~ 78 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRGA-----TVIM----AVRDTRKGEAAARTMA-------GQVEVRELDLQDLSSVR 78 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHTTSS-------SEEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhc-------CCeeEEEcCCCCHHHHH
Confidence 347899999999999999999999875 2544 4666666654443331 122221 11 221
Q ss_pred -c---cCCCcEEEEeCCcCCCC-CC---chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 -L---FEDAEWALLIGAKPRGP-GM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 -a---l~dADiVIi~~g~~~k~-g~---~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
. +...|++|..+|....+ .. +-...+..|..-...+.+.+...- ...||+++--.
T Consensus 79 ~~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~--~~riv~isS~~ 141 (291)
T 3rd5_A 79 RFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL--TDRVVTVSSMA 141 (291)
T ss_dssp HHHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGE--EEEEEEECCGG
T ss_pred HHHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HhheeEeechh
Confidence 2 23569999988754211 11 122356777776667777766653 23677776543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.12 Score=48.64 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecccc-chhhhHHHHHHHhhhhcCCCcceEEEe-c--Ccccc--
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKIG-I--NPYEL-- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d-~~~~~l~g~a~DL~d~~~~~~~~v~i~-~--~~~ea-- 169 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+ ++.+.++..+.++.... .++... . .+.+.
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~ 95 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAASGF-----DIAI----TGIGDAEGVAPVIAELSGLG----ARVIFLRADLADLSSHQ 95 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCCHHHHHHHHHHHHHTT----CCEEEEECCTTSGGGHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-----eEEE----EeCCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHH
Confidence 35789999999999999999999875 2443 23 24455665555554322 122211 1 12221
Q ss_pred --c-------CCCcEEEEeCCcC---CCCC--Cchh---hhHHhhH----HHHHHHHHHHHhhc-CCCeEEEEeCCch
Q 015501 170 --F-------EDAEWALLIGAKP---RGPG--MERA---GLLDING----QIFAEQGKALNAVA-SRNVKVIVVGNPC 225 (405)
Q Consensus 170 --l-------~dADiVIi~~g~~---~k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a-~p~a~vIvvtNP~ 225 (405)
+ ...|++|..+|.. .++- .+.. ..+..|. .+.+.+.+.+.+.. ...+.||+++--.
T Consensus 96 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~ 173 (280)
T 4da9_A 96 ATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVS 173 (280)
T ss_dssp HHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-
T ss_pred HHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchh
Confidence 2 2789999988762 1221 1111 2234443 34455566665542 1157788877543
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.0071 Score=58.38 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=58.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC------cccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYEL 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~------~~ea 169 (405)
|||.|+||+|++|++++..|+..+-.....+|.. .+++..... +.+ .++.+ ..| ..++
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~----~~r~~~~~~-----~~~------~~~~~~~~Dl~d~~~~~~~ 66 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYG----VARRTRPAW-----HED------NPINYVQCDISDPDDSQAK 66 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEE----EESSCCCSC-----CCS------SCCEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEE----EeCCCCccc-----ccc------CceEEEEeecCCHHHHHHH
Confidence 5899999999999999999987651000002332 233222111 100 01111 111 1245
Q ss_pred cCC---CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 170 FED---AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 170 l~d---ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
+++ +|+||.+++... .+..+....|......+.+.+.+.
T Consensus 67 ~~~~~~~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~ 108 (364)
T 2v6g_A 67 LSPLTDVTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPN 108 (364)
T ss_dssp HTTCTTCCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHh
Confidence 666 999999887542 334556788988899999888876
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.36 Score=45.21 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC---------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--------- 165 (405)
-+.+.|+||++.||..++..|+..|. .+.+ .|+++++++..+.++.... . ++. +..|
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga-----~Vv~----~~~~~~~~~~~~~~i~~~g-~---~~~~~~~Dvt~~~~v~~ 73 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDS-----IVVA----VELLEDRLNQIVQELRGMG-K---EVLGVKADVSKKKDVEE 73 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEccCCCHHHHHH
Confidence 45788999999999999999999875 2554 5677788888887776532 1 111 1111
Q ss_pred ----cccccCCCcEEEEeCCcC--CCCCC--chh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 166 ----PYELFEDAEWALLIGAKP--RGPGM--ERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 166 ----~~eal~dADiVIi~~g~~--~k~g~--~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
..+.+-.-|++|..+|.. .+|-. +.. ..++.|+ -..+...+.|.+. ..|.||+++-
T Consensus 74 ~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IVnisS 144 (254)
T 4fn4_A 74 FVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQ--GKGVIVNTAS 144 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEec
Confidence 134456789999988753 23321 222 2244443 3466777777774 4688888874
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.0064 Score=59.30 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=60.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh-----hHHHHHHHhhhhcCCCcceEEEe-cC--cc-
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-----ALEGVAMELEDSLFPLLREVKIG-IN--PY- 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~-----~l~g~a~DL~d~~~~~~~~v~i~-~~--~~- 167 (405)
++|.|+||+|+||++++..|+..|. .|.+ .+++.. .++....++... ...++.+. .| +.
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~----~~r~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~Dl~d~~ 92 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGY-----EVHG----IVRRSSSFNTGRIEHLYKNPQAH---IEGNMKLHYGDLTDST 92 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECCCSSCCCTTTGGGC------------CEEEEECCTTCHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECCccccchhhHHHHhhhhccc---cCCCceEEEccCCCHH
Confidence 6899999999999999999998763 2433 222211 111110000000 00122221 11 22
Q ss_pred ---cccCC--CcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCC--CeEEEEeCC
Q 015501 168 ---ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGN 223 (405)
Q Consensus 168 ---eal~d--ADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p--~a~vIvvtN 223 (405)
+++++ .|+||.+++..... ..+....+..|+.-...+.+.+.+.. . ...||.++-
T Consensus 93 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~~~~iv~~SS 156 (375)
T 1t2a_A 93 CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCG-LINSVKFYQAST 156 (375)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEE
T ss_pred HHHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhC-CCccceEEEecc
Confidence 23443 59999988753210 01223456677777788888887752 2 156666654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.19 Score=46.81 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cccc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea--- 169 (405)
.+++.|+||+|.||.+++..|+..|. .+.+.. .++.+.++..+.++.+.. .++.. ..| +.+.
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 85 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGA-----KVVVNY---ANSTKDAEKVVSEIKALG----SDAIAIKADIRQVPEIVK 85 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEEc---CCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 46899999999999999999999875 244311 223344555555554321 12221 111 2222
Q ss_pred --------cCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 --------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 --------l~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|...... .+. ...+..|..-...+.+.+..+-...+.||+++--
T Consensus 86 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~ 154 (270)
T 3is3_A 86 LFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN 154 (270)
T ss_dssp HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 236799998877542111 121 1335566555555555554443245677777653
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.051 Score=52.14 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=44.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEecCcccccC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFE 171 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~~~~eal~ 171 (405)
|.+|+||+|+||+|.||+.++..+.+.+- +.|.-. +|++..... ..|+.+.. .. ...+.++.+..+.+.
T Consensus 18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~------~eLvg~-vd~~~~~~~--G~d~gel~-G~~~~gv~v~~dl~~ll~ 87 (288)
T 3ijp_A 18 GPGSMRLTVVGANGRMGRELITAIQRRKD------VELCAV-LVRKGSSFV--DKDASILI-GSDFLGVRITDDPESAFS 87 (288)
T ss_dssp ---CEEEEESSTTSHHHHHHHHHHHTCSS------EEEEEE-BCCTTCTTT--TSBGGGGT-TCSCCSCBCBSCHHHHTT
T ss_pred ccCCeEEEEECCCCHHHHHHHHHHHhCCC------CEEEEE-EecCCcccc--ccchHHhh-ccCcCCceeeCCHHHHhc
Confidence 34578999999889999999998886532 222111 344322111 12222221 11 124556666677788
Q ss_pred CCcEEEEe
Q 015501 172 DAEWALLI 179 (405)
Q Consensus 172 dADiVIi~ 179 (405)
++|+||-.
T Consensus 88 ~aDVvIDF 95 (288)
T 3ijp_A 88 NTEGILDF 95 (288)
T ss_dssp SCSEEEEC
T ss_pred CCCEEEEc
Confidence 99999843
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.0058 Score=57.69 Aligned_cols=106 Identities=19% Similarity=0.062 Sum_probs=60.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc--ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC----ccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~--~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----~~eal 170 (405)
+||.|+||+|++|++++..|+.. +. .|.+ .+++....+ +.... . -+..-.. ..+++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~-----~V~~----~~r~~~~~~-----~~~~~-~---~~~~D~~d~~~~~~~~ 64 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTE-----NVIA----SDIRKLNTD-----VVNSG-P---FEVVNALDFNQIEHLV 64 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGG-----GEEE----EESCCCSCH-----HHHSS-C---EEECCTTCHHHHHHHH
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCC-----EEEE----EcCCCcccc-----ccCCC-c---eEEecCCCHHHHHHHH
Confidence 68999999999999999999986 43 2433 223222211 10100 0 0110011 12345
Q ss_pred C--CCcEEEEeCCcCCCCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 171 E--DAEWALLIGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 171 ~--dADiVIi~~g~~~k~g-~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+ ++|+||.+++...... .+.......|..-...+.+.+.+. + -..+|.++
T Consensus 65 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~S 117 (312)
T 2yy7_A 65 EVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-K-IKKIFWPS 117 (312)
T ss_dssp HHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-S-CSEEECCE
T ss_pred hhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEec
Confidence 5 8999999877432110 123345678888888888888774 2 23555554
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.16 Score=47.52 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 51 (280)
T 1xkq_A 6 NKTVIITGSSNGIGRTTAILFAQEGA-----NVTI----TGRSSERLEETRQIIL 51 (280)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999999875 2444 4566666665555554
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.06 Score=49.75 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc--------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+. +....++.. . -+..-..+.
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~-~~~~~~~~~-~-----~~~~D~~~~~~~~~~~~ 69 (256)
T 2d1y_A 6 GKGVLVTGGARGIGRAIAQAFAREGA-----LVAL----CDLRPEG-KEVAEAIGG-A-----FFQVDLEDERERVRFVE 69 (256)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSTTH-HHHHHHHTC-E-----EEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCChhH-HHHHHHhhC-C-----EEEeeCCCHHHHHHHHH
Confidence 46899999999999999999999874 2444 3444444 333333321 0 000001111
Q ss_pred ---cccCCCcEEEEeCCcCCC-C--CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ---ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ---eal~dADiVIi~~g~~~k-~--g~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.... + ..+. ...+..|..- .+...+.+.+. ..+.||+++--
T Consensus 70 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 137 (256)
T 2d1y_A 70 EAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVASV 137 (256)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEccc
Confidence 123468999998875421 1 1111 2334555443 33444445442 35788887754
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.017 Score=57.10 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=44.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEecCccccc-C
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELF-E 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal-~ 171 (405)
.+|.||+|+||+|.+|..++..|...+. +.|..+...++..+. ..|+. +.. .+..+..-+.+++ .
T Consensus 11 ~~~~~V~IvGAtG~vG~ellrlL~~hP~------~el~~l~S~~~aG~~---~~~~~----p~~~~~l~~~~~~~~~~~~ 77 (351)
T 1vkn_A 11 HHMIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRTYAGKK---LEEIF----PSTLENSILSEFDPEKVSK 77 (351)
T ss_dssp -CCEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECSTTTTSB---HHHHC----GGGCCCCBCBCCCHHHHHH
T ss_pred cceeEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEeCcccccCC---hHHhC----hhhccCceEEeCCHHHhhc
Confidence 4689999999999999999999998754 444444443322211 11110 111 1223322234444 7
Q ss_pred CCcEEEEeCC
Q 015501 172 DAEWALLIGA 181 (405)
Q Consensus 172 dADiVIi~~g 181 (405)
++|+|+++.+
T Consensus 78 ~~Dvvf~alp 87 (351)
T 1vkn_A 78 NCDVLFTALP 87 (351)
T ss_dssp HCSEEEECCS
T ss_pred CCCEEEECCC
Confidence 8999998643
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.17 Score=47.19 Aligned_cols=112 Identities=11% Similarity=0.060 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL------ 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea------ 169 (405)
.+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... -+..-..+.+.
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~Dv~d~~~v~~~~~ 74 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGA-----RVVI----CDKDESGGRALEQELPGAV-----FILCDVTQEDDVKTLVS 74 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHCTTEE-----EEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcCCe-----EEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999874 2444 4566565554444332110 01111112222
Q ss_pred -----cCCCcEEEEeCCcCC--CCC--Cch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 -----FEDAEWALLIGAKPR--GPG--MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 -----l~dADiVIi~~g~~~--k~g--~~r---~~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|... .+- .+. ...+..|..- .+...+.+.+. .+.||+++--
T Consensus 75 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS~ 142 (270)
T 1yde_A 75 ETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISSL 142 (270)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCH
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC---CCEEEEEcCc
Confidence 237899999887532 111 111 1234555443 33334444432 4677777753
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.045 Score=51.19 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.+++.|+||+|.||.+++..|++.|. .|.+ .+++.++++..+.++
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~ 74 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGL-----GVVI----ADLAAEKGKALADEL 74 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHh
Confidence 46799999999999999999999875 2444 466667766665554
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.064 Score=49.08 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cccc--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~ea-- 169 (405)
+.+++.|+||+|.+|.+++..|+..|. .+.+. ..++.+.++....++.... .++.. ..| +.+.
T Consensus 6 ~~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 73 (255)
T 3icc_A 6 KGKVALVTGASRGIGRAIAKRLANDGA-----LVAIH---YGNRKEEAEETVYEIQSNG----GSAFSIGANLESLHGVE 73 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE---ESSCSHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----eEEEE---eCCchHHHHHHHHHHHhcC----CceEEEecCcCCHHHHH
Confidence 356899999999999999999999875 24331 2344455555555554322 12211 111 1111
Q ss_pred --c-------------CCCcEEEEeCCcCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 170 --F-------------EDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 170 --l-------------~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+ ...|++|..+|...... .+. ...+..|..-...+.+.+..+-.+.+.||+++-..
T Consensus 74 ~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~ 150 (255)
T 3icc_A 74 ALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA 150 (255)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred HHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence 1 12899999887532111 111 12345565544555555444322356788887643
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.063 Score=52.06 Aligned_cols=72 Identities=14% Similarity=-0.044 Sum_probs=50.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
....+|+||| +|.+|..++..|....-+ ..+.+ .|++.++++..+.++.... ..+. ..+..+++ ++
T Consensus 123 ~~~~~v~iIG-aG~~a~~~~~al~~~~~~---~~V~v----~~r~~~~a~~la~~~~~~~----~~~~-~~~~~e~v-~a 188 (322)
T 1omo_A 123 KNSSVFGFIG-CGTQAYFQLEALRRVFDI---GEVKA----YDVREKAAKKFVSYCEDRG----ISAS-VQPAEEAS-RC 188 (322)
T ss_dssp TTCCEEEEEC-CSHHHHHHHHHHHHHSCC---CEEEE----ECSSHHHHHHHHHHHHHTT----CCEE-ECCHHHHT-SS
T ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHhCCc---cEEEE----ECCCHHHHHHHHHHHHhcC----ceEE-ECCHHHHh-CC
Confidence 3468999999 599999999988863211 23554 5777788887776664311 1334 45566788 99
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+++
T Consensus 189 DvVi~a 194 (322)
T 1omo_A 189 DVLVTT 194 (322)
T ss_dssp SEEEEC
T ss_pred CEEEEe
Confidence 999986
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.08 Score=49.10 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc-----
Q 015501 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----- 168 (405)
Q Consensus 96 ~~KI~IIGAa--G~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----- 168 (405)
.++|.|+||+ |.||.+++..|+..|. .|.+ .+++. .++....++.+.. +...-+..-..+.+
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-----~V~~----~~r~~-~~~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~ 77 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGA-----ELAF----TYQND-KLKGRVEEFAAQL-GSDIVLQCDVAEDASIDTM 77 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTC-----EEEE----EESST-TTHHHHHHHHHHT-TCCCEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC-----EEEE----EcCcH-HHHHHHHHHHHhc-CCcEEEEccCCCHHHHHHH
Confidence 3579999998 8999999999999874 2444 23433 2222233332211 10000111111121
Q ss_pred ------ccCCCcEEEEeCCcCCC-----CC---Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ------LFEDAEWALLIGAKPRG-----PG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ------al~dADiVIi~~g~~~k-----~g---~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|.... +- .+ -...+..|..-...+.+.+..+-.+.+.||+++--
T Consensus 78 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~ 150 (265)
T 1qsg_A 78 FAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYL 150 (265)
T ss_dssp HHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred HHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcch
Confidence 12367999998875431 10 11 12345667666666666665542124678887753
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.26 Score=47.18 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecccc----------chhhhHHHHHHHhhhhcCCCcceEEE-ec
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE----------RSLQALEGVAMELEDSLFPLLREVKI-GI 164 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d----------~~~~~l~g~a~DL~d~~~~~~~~v~i-~~ 164 (405)
.+++.|+||+|.||.+++..|++.|. .+.+ ++.+ .+.+.++..+.++.... .++.. ..
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~-----~Vv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 114 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGA-----DIVA--IDLCRQQPNLDYAQGSPEELKETVRLVEEQG----RRIIARQA 114 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--EECCCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEEC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----eEEE--EecccccccccccccCHHHHHHHHHHHHhcC----CeEEEEEC
Confidence 46899999999999999999999875 2433 2222 11344544444443221 12222 11
Q ss_pred C--ccc-----------ccCCCcEEEEeCCcCCC-C--CCchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEe
Q 015501 165 N--PYE-----------LFEDAEWALLIGAKPRG-P--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVV 221 (405)
Q Consensus 165 ~--~~e-----------al~dADiVIi~~g~~~k-~--g~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvv 221 (405)
| +.+ .+...|++|..+|.... + ..+.. ..+..|+ .+.+.+.+.+.+. +..+.||++
T Consensus 115 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~~g~Iv~i 193 (317)
T 3oec_A 115 DVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIER-GQGGSVIFV 193 (317)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-CSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCCEEEEE
Confidence 1 111 22378999998875431 1 11221 2345553 3445555666654 246888888
Q ss_pred CCch
Q 015501 222 GNPC 225 (405)
Q Consensus 222 tNP~ 225 (405)
+-..
T Consensus 194 sS~~ 197 (317)
T 3oec_A 194 SSTV 197 (317)
T ss_dssp CCGG
T ss_pred CcHH
Confidence 7543
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.21 Score=45.88 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc-------c
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP-------Y 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~-------~ 167 (405)
+.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++ ++. .+.+..|. .
T Consensus 18 ~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~----~~~--------~~~~~~D~~~~~~~~~ 76 (249)
T 1o5i_A 18 RDKGVLVLAASRGIGRAVADVLSQEGA-----EVTI----CARNEELLK----RSG--------HRYVVCDLRKDLDLLF 76 (249)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHH----HTC--------SEEEECCTTTCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHH----hhC--------CeEEEeeHHHHHHHHH
Confidence 457899999999999999999999774 2444 345433222 121 11111121 1
Q ss_pred cccCCCcEEEEeCCcCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g---~~r---~~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+.+.|++|..+|...... .+. ...+..|. .+.+.+.+.+.+. ..+.||+++--
T Consensus 77 ~~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 141 (249)
T 1o5i_A 77 EKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK--GWGRIVAITSF 141 (249)
T ss_dssp HHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEcch
Confidence 23347899999887543211 111 12334443 2345556666664 35788887754
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.043 Score=54.63 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCchHHHHHH-HHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCC
Q 015501 96 MVNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~-~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dA 173 (405)
.+||+|+||+|.+|..++. .|.+.+.. .+.+.++... +..+ ...++.. . ...+. ..+.+++.++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~-~aG~---~~~~~~~----~--~~~v~~~~~~~~~~~v 69 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFD----LIEPVFFSTS-NAGG---KAPSFAK----N--ETTLKDATSIDDLKKC 69 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGG----GSEEEEEESS-CTTS---BCCTTCC----S--CCBCEETTCHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCC----ceEEEEEech-hcCC---CHHHcCC----C--ceEEEeCCChhHhcCC
Confidence 5799999999999999998 77766642 1344443222 1110 0111211 0 11121 2234668899
Q ss_pred cEEEEeCC
Q 015501 174 EWALLIGA 181 (405)
Q Consensus 174 DiVIi~~g 181 (405)
|+||++.+
T Consensus 70 Dvvf~a~~ 77 (377)
T 3uw3_A 70 DVIITCQG 77 (377)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99998754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.05 Score=50.76 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-----------------hhhHHHHHHHhhhhcCCCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----------------LQALEGVAMELEDSLFPLLR 158 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-----------------~~~l~g~a~DL~d~~~~~~~ 158 (405)
..||.|+|+ |.+|+.++..|+..|+ + .|.| +|.|.- ..+++..+..+.+.. +..
T Consensus 31 ~~~VlVvG~-Gg~G~~va~~La~~Gv-~---~i~l--vD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~- 101 (249)
T 1jw9_B 31 DSRVLIVGL-GGLGCAASQYLASAGV-G---NLTL--LDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN-PHI- 101 (249)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTC-S---EEEE--ECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC-TTS-
T ss_pred CCeEEEEee-CHHHHHHHHHHHHcCC-C---eEEE--EcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC-CCc-
Confidence 369999995 9999999999999886 2 2444 334331 146666666665543 221
Q ss_pred eEEEec------CcccccCCCcEEEEeCC
Q 015501 159 EVKIGI------NPYELFEDAEWALLIGA 181 (405)
Q Consensus 159 ~v~i~~------~~~eal~dADiVIi~~g 181 (405)
++.... +..+.++++|+||.+.+
T Consensus 102 ~v~~~~~~~~~~~~~~~~~~~DvVi~~~d 130 (249)
T 1jw9_B 102 AITPVNALLDDAELAALIAEHDLVLDCTD 130 (249)
T ss_dssp EEEEECSCCCHHHHHHHHHTSSEEEECCS
T ss_pred EEEEEeccCCHhHHHHHHhCCCEEEEeCC
Confidence 233222 12345789999998743
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.045 Score=50.86 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+|||+||| +|.+|.+++..|...|.
T Consensus 5 ~~mkI~IIG-~G~~G~sLA~~L~~~G~ 30 (232)
T 3dfu_A 5 PRLRVGIFD-DGSSTVNMAEKLDSVGH 30 (232)
T ss_dssp CCCEEEEEC-CSCCCSCHHHHHHHTTC
T ss_pred CCcEEEEEe-eCHHHHHHHHHHHHCCC
Confidence 457999999 59999999999998764
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.045 Score=54.81 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccC-CCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC----ccccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVL-GPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYELF 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~-~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~----~~eal 170 (405)
|+||+|+|| |.+|+.++..|++.+-+ . .+.+ .+++.++++..+.++..........+..... ..+.+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~---~V~v----~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l 72 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFS---HITL----ASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALI 72 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCC---EEEE----EESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCce---EEEE----EECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHH
Confidence 579999997 99999999999986521 1 2544 5677778777776665321000011111111 22445
Q ss_pred CC--CcEEEEeCC
Q 015501 171 ED--AEWALLIGA 181 (405)
Q Consensus 171 ~d--ADiVIi~~g 181 (405)
++ +|+||.+++
T Consensus 73 ~~~~~DvVin~ag 85 (405)
T 4ina_A 73 NEVKPQIVLNIAL 85 (405)
T ss_dssp HHHCCSEEEECSC
T ss_pred HhhCCCEEEECCC
Confidence 55 899998865
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.045 Score=53.30 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (405)
+++||+|||+ |.+|...+..|... +-+ ++. .+ .|++.++++..+..+ . +..+++..+.++
T Consensus 12 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~----~lv-av--~d~~~~~~~~~~~~~-----~----~~~~~~~~~ll~~~ 74 (354)
T 3q2i_A 12 RKIRFALVGC-GRIANNHFGALEKHADRA----ELI-DV--CDIDPAALKAAVERT-----G----ARGHASLTDMLAQT 74 (354)
T ss_dssp SCEEEEEECC-STTHHHHHHHHHHTTTTE----EEE-EE--ECSSHHHHHHHHHHH-----C----CEEESCHHHHHHHC
T ss_pred CcceEEEEcC-cHHHHHHHHHHHhCCCCe----EEE-EE--EcCCHHHHHHHHHHc-----C----CceeCCHHHHhcCC
Confidence 5789999995 99999999888875 211 221 12 466667766554432 1 234555556665
Q ss_pred CCcEEEEeC
Q 015501 172 DAEWALLIG 180 (405)
Q Consensus 172 dADiVIi~~ 180 (405)
++|+|+++.
T Consensus 75 ~~D~V~i~t 83 (354)
T 3q2i_A 75 DADIVILTT 83 (354)
T ss_dssp CCSEEEECS
T ss_pred CCCEEEECC
Confidence 899999863
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.014 Score=56.99 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|+||++++..|+..|.
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~ 53 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGY 53 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCC
Confidence 6899999999999999999998764
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=61.05 Aligned_cols=108 Identities=10% Similarity=0.043 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC---c---
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P--- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~---~--- 166 (405)
++++|.|+||+|++|++++..|+.. +. .|.+ .+++.+.+.. +.. . .++.+. .| .
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~-----~V~~----~~r~~~~~~~----~~~---~--~~v~~v~~Dl~d~~~~ 375 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHY-----EVYG----LDIGSDAISR----FLN---H--PHFHFVEGDISIHSEW 375 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSE-----EEEE----EESCCTTTGG----GTT---C--TTEEEEECCTTTCHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCC-----EEEE----EEcCchhhhh----hcc---C--CceEEEECCCCCcHHH
Confidence 5689999999999999999999986 43 2332 2333222211 111 0 112211 11 1
Q ss_pred -ccccCCCcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 -YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 -~eal~dADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.++++++|+||.+++....+. .+....+..|..-...+.+.+.+. + ..+|.++-
T Consensus 376 ~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~--~r~V~~SS 432 (660)
T 1z7e_A 376 IEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R--KRIIFPST 432 (660)
T ss_dssp HHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEECC
T ss_pred HHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C--CEEEEEec
Confidence 135668999999877532111 123345667777778888888775 2 56777765
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.088 Score=48.23 Aligned_cols=112 Identities=10% Similarity=0.038 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc-------c
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------E 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------e 168 (405)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.++++... ++.... -+..-..+. +
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~-~~~~~~-----~~~~D~~~~~~~~~~~~ 70 (246)
T 2ag5_A 6 GKVIILTAAAQGIGQAAALAFAREGA-----KVIA----TDINESKLQELE-KYPGIQ-----TRVLDVTKKKQIDQFAN 70 (246)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHGGGG-GSTTEE-----EEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHH-hccCce-----EEEeeCCCHHHHHHHHH
Confidence 46899999999999999999999874 2444 355555444322 221100 001001112 2
Q ss_pred ccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 LFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g---~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|...... .+.. ..+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 71 ~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 134 (246)
T 2ag5_A 71 EVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSV 134 (246)
T ss_dssp HCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCS
T ss_pred HhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEech
Confidence 2457899999887543211 1111 23344433 344445555553 45788887753
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.22 Score=45.76 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~ 32 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGY 32 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCC
Confidence 356899999999999999999999875
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.09 Score=48.43 Aligned_cols=115 Identities=10% Similarity=0.017 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH--HHHhhhhcCCCcceEE-EecCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV--AMELEDSLFPLLREVK-IGINPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~--a~DL~d~~~~~~~~v~-i~~~~~eal~dA 173 (405)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.+... ..|+.+.. .+. ......+.+...
T Consensus 23 k~vlITGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~d~~d~~-----~v~~~~~~~~~~~g~i 88 (251)
T 3orf_A 23 KNILVLGGSGALGAEVVKFFKSKSW-----NTIS----IDFRENPNADHSFTIKDSGEE-----EIKSVIEKINSKSIKV 88 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCCTTSSEEEECSCSSHH-----HHHHHHHHHHTTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCcccccccceEEEeCCHH-----HHHHHHHHHHHHcCCC
Confidence 5799999999999999999999875 2433 23332222100 00000000 000 000112233467
Q ss_pred cEEEEeCCcCCC-C---CCc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 174 EWALLIGAKPRG-P---GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 174 DiVIi~~g~~~k-~---g~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
|++|..+|.... + ..+ -...+..|..-...+.+.+..+-.+++.||+++-..
T Consensus 89 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 147 (251)
T 3orf_A 89 DTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA 147 (251)
T ss_dssp EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred CEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence 999998775321 1 111 123455676655566665555432357888887543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.053 Score=52.02 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.++|.|+|| |.+|..++..|+..|. ..|.+ .+++.++++..+.++.... . .+....+..+.+.++|
T Consensus 140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~----~~V~v----~nR~~~ka~~la~~~~~~~-~---~~~~~~~~~~~~~~aD 206 (297)
T 2egg_A 140 DGKRILVIGA-GGGARGIYFSLLSTAA----ERIDM----ANRTVEKAERLVREGDERR-S---AYFSLAEAETRLAEYD 206 (297)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTC----SEEEE----ECSSHHHHHHHHHHSCSSS-C---CEECHHHHHHTGGGCS
T ss_pred CCCEEEEECc-HHHHHHHHHHHHHCCC----CEEEE----EeCCHHHHHHHHHHhhhcc-C---ceeeHHHHHhhhccCC
Confidence 3579999995 9999999999998764 13554 5777777776665543210 0 1111123456788999
Q ss_pred EEEEeCCcC
Q 015501 175 WALLIGAKP 183 (405)
Q Consensus 175 iVIi~~g~~ 183 (405)
+||.+.+.+
T Consensus 207 ivIn~t~~~ 215 (297)
T 2egg_A 207 IIINTTSVG 215 (297)
T ss_dssp EEEECSCTT
T ss_pred EEEECCCCC
Confidence 999875543
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.014 Score=53.54 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+.++|.|+||+|.||.+++..|++.|.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~ 32 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW 32 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC
Confidence 3457899999999999999999998774
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.11 Score=47.94 Aligned_cols=28 Identities=14% Similarity=-0.011 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCC--CchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAA--GMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAa--G~VGs~la~~L~~~~~ 121 (405)
.+.++|.|+||+ |.+|.+++..|+..|.
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~ 41 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGA 41 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC
Confidence 456899999998 9999999999999875
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.012 Score=56.00 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=42.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~dA 173 (405)
+++||+|+||+|.+|+.++..+...+-+ ++.- . +|++.+.+. ..|+.+.. ... ..+.++.+..+.++++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~----elva-~--~d~~~~~~~--g~d~~~~~-g~~~~~v~~~~dl~~~l~~~ 73 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGV----QLGA-A--LEREGSSLL--GSDAGELA-GAGKTGVTVQSSLDAVKDDF 73 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTE----ECCC-E--ECCTTCTTC--SCCTTCSS-SSSCCSCCEESCSTTTTTSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCC----EEEE-E--EecCchhhh--hhhHHHHc-CCCcCCceecCCHHHHhcCC
Confidence 5689999998899999999988754311 1210 1 243332211 12222111 111 1344556666778899
Q ss_pred cEEE-Ee
Q 015501 174 EWAL-LI 179 (405)
Q Consensus 174 DiVI-i~ 179 (405)
|+|| ++
T Consensus 74 DvVIDft 80 (273)
T 1dih_A 74 DVFIDFT 80 (273)
T ss_dssp SEEEECS
T ss_pred CEEEEcC
Confidence 9999 54
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.15 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++.|+||+|.||.+++..|+..|.
T Consensus 27 gk~vlVTGas~GIG~aia~~la~~G~ 52 (322)
T 3qlj_A 27 GRVVIVTGAGGGIGRAHALAFAAEGA 52 (322)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 46789999999999999999999875
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.13 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAA 118 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~ 118 (405)
+++||+||| +|.+|..++..|..
T Consensus 3 ~~irVaIIG-~G~iG~~~~~~l~~ 25 (312)
T 1nvm_B 3 QKLKVAIIG-SGNIGTDLMIKVLR 25 (312)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHH
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHh
Confidence 568999999 59999999888865
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.033 Score=53.89 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=43.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (405)
.+++||+|||+ |.+|..++..|...+-+ ++. .+ .|++.++++..+....- + ..+++..+.+.
T Consensus 3 m~~~~igiiG~-G~~g~~~~~~l~~~~~~----~l~-av--~d~~~~~~~~~~~~~~~---~-----~~~~~~~~ll~~~ 66 (330)
T 3e9m_A 3 LDKIRYGIMST-AQIVPRFVAGLRESAQA----EVR-GI--ASRRLENAQKMAKELAI---P-----VAYGSYEELCKDE 66 (330)
T ss_dssp CCCEEEEECSC-CTTHHHHHHHHHHSSSE----EEE-EE--BCSSSHHHHHHHHHTTC---C-----CCBSSHHHHHHCT
T ss_pred CCeEEEEEECc-hHHHHHHHHHHHhCCCc----EEE-EE--EeCCHHHHHHHHHHcCC---C-----ceeCCHHHHhcCC
Confidence 35689999995 99999999988874321 122 12 46666766655543211 1 12344455555
Q ss_pred CCcEEEEe
Q 015501 172 DAEWALLI 179 (405)
Q Consensus 172 dADiVIi~ 179 (405)
++|+|+++
T Consensus 67 ~~D~V~i~ 74 (330)
T 3e9m_A 67 TIDIIYIP 74 (330)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEc
Confidence 79999986
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.078 Score=50.58 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--CcccccCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFED 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~~~eal~d 172 (405)
+..++.|+|| |.+|..++..|+..|. ..|.+ .+++.++++..+.++.... +. .++.... +..+.+++
T Consensus 126 ~~k~vlVlGa-GG~g~aia~~L~~~G~----~~v~i----~~R~~~~a~~la~~~~~~~-~~-~~i~~~~~~~l~~~l~~ 194 (283)
T 3jyo_A 126 KLDSVVQVGA-GGVGNAVAYALVTHGV----QKLQV----ADLDTSRAQALADVINNAV-GR-EAVVGVDARGIEDVIAA 194 (283)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC----SEEEE----ECSSHHHHHHHHHHHHHHH-TS-CCEEEECSTTHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC----CEEEE----EECCHHHHHHHHHHHHhhc-CC-ceEEEcCHHHHHHHHhc
Confidence 3579999996 9999999999998765 23555 5777788887777765432 11 1233332 44567789
Q ss_pred CcEEEEe
Q 015501 173 AEWALLI 179 (405)
Q Consensus 173 ADiVIi~ 179 (405)
+|+||.+
T Consensus 195 ~DiVIna 201 (283)
T 3jyo_A 195 ADGVVNA 201 (283)
T ss_dssp SSEEEEC
T ss_pred CCEEEEC
Confidence 9999976
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.11 Score=51.20 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..++..|...|+ .|.. .|++....+ .+.++ . +....+..+.+++||+
T Consensus 164 gktvGIIG-~G~IG~~vA~~l~~~G~-----~V~~----~dr~~~~~~-~~~~~-----g----~~~~~~l~ell~~aDv 223 (351)
T 3jtm_A 164 GKTIGTVG-AGRIGKLLLQRLKPFGC-----NLLY----HDRLQMAPE-LEKET-----G----AKFVEDLNEMLPKCDV 223 (351)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGCC-----EEEE----ECSSCCCHH-HHHHH-----C----CEECSCHHHHGGGCSE
T ss_pred CCEEeEEE-eCHHHHHHHHHHHHCCC-----EEEE----eCCCccCHH-HHHhC-----C----CeEcCCHHHHHhcCCE
Confidence 47999999 59999999999887654 2332 344432222 11111 1 1122456788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
|+++. |..+. ++ .++ |.+. +... ++++++|+++. ++|.-+
T Consensus 224 V~l~~--Plt~~-t~-~li--~~~~-------l~~m-k~gailIN~aRG~~vde~a 265 (351)
T 3jtm_A 224 IVINM--PLTEK-TR-GMF--NKEL-------IGKL-KKGVLIVNNARGAIMERQA 265 (351)
T ss_dssp EEECS--CCCTT-TT-TCB--SHHH-------HHHS-CTTEEEEECSCGGGBCHHH
T ss_pred EEECC--CCCHH-HH-Hhh--cHHH-------HhcC-CCCCEEEECcCchhhCHHH
Confidence 99873 32221 11 111 2222 2333 58899999984 444443
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.11 Score=48.12 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=61.9
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc----c
Q 015501 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----L 169 (405)
Q Consensus 96 ~~KI~IIGAa--G~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----a 169 (405)
.+++.|+||+ |.||.+++..|+..|. .+.+ .+++.+ ++....++.+.. +...-+..-..+.+ .
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-----~V~~----~~r~~~-~~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~ 76 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGA-----EVAL----SYQAER-LRPEAEKLAEAL-GGALLFRADVTQDEELDAL 76 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHTC-----EEEE----EESCGG-GHHHHHHHHHHT-TCCEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-----EEEE----EcCCHH-HHHHHHHHHHhc-CCcEEEECCCCCHHHHHHH
Confidence 4689999998 8999999999998874 2444 234332 222223332211 10000111111222 1
Q ss_pred c-------CCCcEEEEeCCcCC-----CCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 F-------EDAEWALLIGAKPR-----GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 l-------~dADiVIi~~g~~~-----k~g--~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+ ...|++|..+|... .+- .+. ...+..|..-...+.+.+.++-...+.||+++-
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 147 (261)
T 2wyu_A 77 FAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY 147 (261)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 2 26799999887543 111 111 234556666555666555543212467777774
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.29 Score=46.25 Aligned_cols=115 Identities=8% Similarity=-0.009 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc---
Q 015501 96 MVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY--- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~--VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~--- 167 (405)
.+++.|+||+|. ||.+++..|++.|. .+.+ .+++.+..+ ...++.... + ++.. ..| +.
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~-~~~~~~~~~-~---~~~~~~~Dv~d~~~v 96 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGA-----ELAF----TYQGDALKK-RVEPLAEEL-G---AFVAGHCDVADAASI 96 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTC-----EEEE----EECSHHHHH-HHHHHHHHH-T---CEEEEECCTTCHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCC-----EEEE----EcCCHHHHH-HHHHHHHhc-C---CceEEECCCCCHHHH
Confidence 468999999887 99999999999875 2444 344432222 222232211 1 1111 111 11
Q ss_pred --------cccCCCcEEEEeCCcCC-----CCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 --------ELFEDAEWALLIGAKPR-----GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 --------eal~dADiVIi~~g~~~-----k~g--~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|... .+- .+. ...+..|..-...+.+.+..+-...+.||+++-.
T Consensus 97 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~ 171 (293)
T 3grk_A 97 DAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY 171 (293)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred HHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence 12247899999887642 111 111 1345566555555555554433246788887743
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.1 Score=47.16 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
+++|.|+||+|.+|.+++..|+..|
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g 27 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDK 27 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCT
T ss_pred CCEEEEecCCchHHHHHHHHHHhcC
Confidence 4689999999999999999999876
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.13 Score=52.12 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-.+|+|+|+ |.||..++..|...|. .|.. .|+++.++....+ + .+ .+ .+..+++++||
T Consensus 219 ~GktV~ViG~-G~IGk~vA~~Lra~Ga-----~Viv----~D~dp~ra~~A~~---~---G~----~v-~~Leeal~~AD 277 (435)
T 3gvp_A 219 GGKQVVVCGY-GEVGKGCCAALKAMGS-----IVYV----TEIDPICALQACM---D---GF----RL-VKLNEVIRQVD 277 (435)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHH---T---TC----EE-CCHHHHTTTCS
T ss_pred cCCEEEEEee-CHHHHHHHHHHHHCCC-----EEEE----EeCChhhhHHHHH---c---CC----Ee-ccHHHHHhcCC
Confidence 3579999995 9999999999987664 2433 4544433321111 1 11 11 24678999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+|+.+.+. +++ -|.+. +... +++++|++++.+-
T Consensus 278 IVi~atgt---~~l-------I~~e~-------l~~M-K~gailINvgrg~ 310 (435)
T 3gvp_A 278 IVITCTGN---KNV-------VTREH-------LDRM-KNSCIVCNMGHSN 310 (435)
T ss_dssp EEEECSSC---SCS-------BCHHH-------HHHS-CTTEEEEECSSTT
T ss_pred EEEECCCC---ccc-------CCHHH-------HHhc-CCCcEEEEecCCC
Confidence 99986332 121 11111 2232 4789999999863
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.39 Score=45.02 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh-------hHHHHHHHhhhhcCCCcceEEEe-cC-
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-------ALEGVAMELEDSLFPLLREVKIG-IN- 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~-------~l~g~a~DL~d~~~~~~~~v~i~-~~- 165 (405)
+.+++.|+||+|.||.+++..|++.|. .+.+ .+++.+ .++..+.++.... . ++... .|
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv 74 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGA-----NVAL----VAKSAEPHPKLPGTIYTAAKEIEEAG-G---QALPIVGDI 74 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTC-----EEEE----EESCCSCCSSSCCCHHHHHHHHHHHT-S---EEEEEECCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECChhhhhhhhHHHHHHHHHHHhcC-C---cEEEEECCC
Confidence 457899999999999999999998875 2444 233332 3444444444322 1 22211 11
Q ss_pred -cc-----------cccCCCcEEEEeCCcCC-CC--CCch---hhhHHhhHHHHHHHHHHHHhhc--CCCeEEEEeCC
Q 015501 166 -PY-----------ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQIFAEQGKALNAVA--SRNVKVIVVGN 223 (405)
Q Consensus 166 -~~-----------eal~dADiVIi~~g~~~-k~--g~~r---~~ll~~N~~i~~~i~~~i~~~a--~p~a~vIvvtN 223 (405)
+. +.+...|++|..+|... ++ ..+. ...+..|..-...+.+.+...- ...+.||+++-
T Consensus 75 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS 152 (285)
T 3sc4_A 75 RDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSP 152 (285)
T ss_dssp TSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 11 12237899999887542 11 1121 1234566554444554443331 13578888875
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.074 Score=52.20 Aligned_cols=89 Identities=19% Similarity=0.147 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||+.+|..+...|+ .|.. .|++.+.. . . .....+..+.+++||+
T Consensus 171 gktiGIIG-lG~IG~~vA~~l~~~G~-----~V~~----~dr~~~~~----------~-~----~~~~~sl~ell~~aDv 225 (340)
T 4dgs_A 171 GKRIGVLG-LGQIGRALASRAEAFGM-----SVRY----WNRSTLSG----------V-D----WIAHQSPVDLARDSDV 225 (340)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE----ECSSCCTT----------S-C----CEECSSHHHHHHTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EcCCcccc----------c-C----ceecCCHHHHHhcCCE
Confidence 37999999 59999999999987654 2433 34443320 0 1 1123456788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+. +..++. .+.+... ++++++|+++.
T Consensus 226 Vil~v--P~t~~---------t~~li~--~~~l~~m-k~gailIN~aR 259 (340)
T 4dgs_A 226 LAVCV--AASAA---------TQNIVD--ASLLQAL-GPEGIVVNVAR 259 (340)
T ss_dssp EEECC---------------------C--HHHHHHT-TTTCEEEECSC
T ss_pred EEEeC--CCCHH---------HHHHhh--HHHHhcC-CCCCEEEECCC
Confidence 99873 22111 111110 1223333 47899999984
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.8 Score=42.82 Aligned_cols=120 Identities=15% Similarity=0.044 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEec---------C
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI---------N 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~---------~ 165 (405)
-+.+.|+||++.||..++..|++.|. .|.+ .|++.+.++..+.++.+...... ....++. .
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga-----~Vvi----~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~ 79 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGA-----RVIL----NDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSK 79 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 45778889999999999999999885 3555 57777888777777764321100 0001110 1
Q ss_pred cccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 166 PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
..+.+-.-|++|..+|... +|- ++.. ..++.|+ ...+..++.+.+- +..+.||+++--.
T Consensus 80 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~~G~IVnisS~~ 148 (255)
T 4g81_D 80 LDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIAR-NSGGKIINIGSLT 148 (255)
T ss_dssp HHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCGG
T ss_pred HHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-cCCCEEEEEeehh
Confidence 2244567899999877543 221 1222 2244453 3456677777654 3568888888443
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.018 Score=54.51 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=57.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhc--ccCCCCCceEEEeccccchhhhHHH---HHHHhhhhcCCCcceEEEecCcccccC-
Q 015501 98 NIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYELFE- 171 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~--~~~~~d~~i~L~l~~~d~~~~~l~g---~a~DL~d~~~~~~~~v~i~~~~~eal~- 171 (405)
||.|+||+|+||++++..|+.. +. .|.+ .++......+ ...|+.|. ....++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~-----~V~~----~~r~~~~~~~~~~~~~D~~d~-----------~~~~~~~~~ 60 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKK-----NVIA----SDIVQRDTGGIKFITLDVSNR-----------DEIDRAVEK 60 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGG-----GEEE----EESSCCCCTTCCEEECCTTCH-----------HHHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCC-----EEEE----ecCCCccccCceEEEecCCCH-----------HHHHHHHhh
Confidence 5899999999999999999986 43 2433 1222111110 00011000 01123444
Q ss_pred -CCcEEEEeCCcCCCCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 172 -DAEWALLIGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 172 -dADiVIi~~g~~~k~g-~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++|+||.+++...... .+....+..|+.-...+.+.+.+. +. ..+|.++
T Consensus 61 ~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~~v~~S 111 (317)
T 3ajr_A 61 YSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RV-EKVVIPS 111 (317)
T ss_dssp TTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred cCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CC-CEEEEec
Confidence 8999999876421111 123345677888888888888774 22 3555554
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.15 Score=47.59 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=62.7
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc-----
Q 015501 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----- 168 (405)
Q Consensus 96 ~~KI~IIGAa--G~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----- 168 (405)
.+++.|+||+ |.||.+++..|+..|. .|.+ .+++.+ ++....++.... +...-+..-..+.+
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~-----~V~~----~~r~~~-~~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~ 74 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGA-----TLAF----TYLNES-LEKRVRPIAQEL-NSPYVYELDVSKEEHFKSL 74 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC-----EEEE----EESSTT-THHHHHHHHHHT-TCCCEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHH-HHHHHHHHHHhc-CCcEEEEcCCCCHHHHHHH
Confidence 4689999998 9999999999998874 2444 344433 222223332211 10000111111111
Q ss_pred ------ccCCCcEEEEeCCcCCC-----C--CCch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 ------LFEDAEWALLIGAKPRG-----P--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 ------al~dADiVIi~~g~~~k-----~--g~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+...|++|..+|.... + ..+. ...+..|..-...+.+.+..+-.+.+.||+++-
T Consensus 75 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 145 (275)
T 2pd4_A 75 YNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY 145 (275)
T ss_dssp HHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 12367999998875431 1 1111 234566766666666665554212467887774
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.049 Score=52.78 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=43.1
Q ss_pred hccCCCEEEEEcCCCchHH-HHHHHHHhcccCCCCCce-EEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccc
Q 015501 92 SWKKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs-~la~~L~~~~~~~~d~~i-~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ea 169 (405)
..++|+||+|||+ |.+|. +++..+...+-+ +| .+ .|++.++++..+.++.- + ..+++..+.
T Consensus 19 ~~~~mirigiIG~-G~ig~~~~~~~~~~~~~~----~lvav----~d~~~~~a~~~a~~~g~---~-----~~y~d~~el 81 (350)
T 4had_A 19 YFQSMLRFGIIST-AKIGRDNVVPAIQDAENC----VVTAI----ASRDLTRAREMADRFSV---P-----HAFGSYEEM 81 (350)
T ss_dssp ---CCEEEEEESC-CHHHHHTHHHHHHHCSSE----EEEEE----ECSSHHHHHHHHHHHTC---S-----EEESSHHHH
T ss_pred cccCccEEEEEcC-hHHHHHHHHHHHHhCCCe----EEEEE----ECCCHHHHHHHHHHcCC---C-----eeeCCHHHH
Confidence 3467899999995 99997 467777664321 22 33 56777777766654321 1 234444444
Q ss_pred c--CCCcEEEEe
Q 015501 170 F--EDAEWALLI 179 (405)
Q Consensus 170 l--~dADiVIi~ 179 (405)
+ .+.|+|+++
T Consensus 82 l~~~~iDaV~I~ 93 (350)
T 4had_A 82 LASDVIDAVYIP 93 (350)
T ss_dssp HHCSSCSEEEEC
T ss_pred hcCCCCCEEEEe
Confidence 5 458999886
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.052 Score=51.43 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCC-cceEEEec--CcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~~--~~~eal~d 172 (405)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.... .. .....++. +..+.+++
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~G~-----~V~i----~~R~~~~~~~l~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~ 188 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGEGA-----EVVL----CGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKG 188 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EECCHHHHHHHHHHHHhcC-CcEEEEecCCCHHHHHHHHHh
Confidence 46899999889999999999998774 2444 4666677776666654321 11 01112211 12456788
Q ss_pred CcEEEEeCCc
Q 015501 173 AEWALLIGAK 182 (405)
Q Consensus 173 ADiVIi~~g~ 182 (405)
+|+||.+++.
T Consensus 189 ~DvlVn~ag~ 198 (287)
T 1lu9_A 189 AHFVFTAGAI 198 (287)
T ss_dssp CSEEEECCCT
T ss_pred CCEEEECCCc
Confidence 9999998764
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.021 Score=52.13 Aligned_cols=117 Identities=9% Similarity=-0.041 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHH----HHHHhhhhcCCCcceEEEecCccccc-
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG----VAMELEDSLFPLLREVKIGINPYELF- 170 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g----~a~DL~d~~~~~~~~v~i~~~~~eal- 170 (405)
.++|.|+||+|.||.+++..|+..|. .+.+ .+++.+.+++ ...|+.+.. ... . ......+.+
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~D~~~~~-~~~-~--~~~~~~~~~~ 69 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGY-----TVLN----IDLSANDQADSNILVDGNKNWTE-QEQ-S--ILEQTASSLQ 69 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-----EEEE----EESSCCTTSSEEEECCTTSCHHH-HHH-H--HHHHHHHHHT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EecCccccccccEEEeCCCCCHH-HHH-H--HHHHHHHHhC
Confidence 35899999999999999999999874 2433 2333222211 001111000 000 0 000001122
Q ss_pred -CCCcEEEEeCCcCC-CC---CCc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 171 -EDAEWALLIGAKPR-GP---GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 171 -~dADiVIi~~g~~~-k~---g~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
...|++|..+|... .+ ..+ -...+..|..-...+.+.+..+-...+.||+++-..
T Consensus 70 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 132 (236)
T 1ooe_A 70 GSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA 132 (236)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred CCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence 37899999887532 11 111 123456676665556665555421346788887543
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.11 Score=48.38 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=43.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||+|||+ |.+|..++..|...+. .+.+ .|++.++++..+.++. . . ..+..+. +++|+||
T Consensus 118 ~v~iiG~-G~~g~~~a~~l~~~g~-----~v~v----~~r~~~~~~~l~~~~~-----~--~---~~~~~~~-~~~Divi 176 (263)
T 2d5c_A 118 PALVLGA-GGAGRAVAFALREAGL-----EVWV----WNRTPQRALALAEEFG-----L--R---AVPLEKA-REARLLV 176 (263)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTC-----CEEE----ECSSHHHHHHHHHHHT-----C--E---ECCGGGG-GGCSEEE
T ss_pred eEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhc-----c--c---hhhHhhc-cCCCEEE
Confidence 9999995 9999999999998764 2554 5676666655544331 1 1 2344556 8999999
Q ss_pred EeCC
Q 015501 178 LIGA 181 (405)
Q Consensus 178 i~~g 181 (405)
.+..
T Consensus 177 ~~tp 180 (263)
T 2d5c_A 177 NATR 180 (263)
T ss_dssp ECSS
T ss_pred EccC
Confidence 8744
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.04 Score=49.82 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++|.|+||+|.+|.+++..|++.|.
T Consensus 3 k~vlVtGasggiG~~la~~l~~~G~ 27 (242)
T 1uay_A 3 RSALVTGGASGLGRAAALALKARGY 27 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.2 Score=46.69 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc--------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.++++... . ....-+..-..+.
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~----~---~~~~~~~~Dv~d~~~v~~~~~ 79 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEGH-----PLLL----LARRVERLKALN----L---PNTLCAQVDVTDKYTFDTAIT 79 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHTTC----C---TTEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHhh----c---CCceEEEecCCCHHHHHHHHH
Confidence 35789999999999999999999875 2544 455544443211 0 0000001101111
Q ss_pred ---cccCCCcEEEEeCCcCCC-C--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ---ELFEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ---eal~dADiVIi~~g~~~k-~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|.... + ..+.. ..+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 80 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~IV~isS~ 147 (266)
T 3p19_A 80 RAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR--NCGTIINISSI 147 (266)
T ss_dssp HHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcCh
Confidence 122378999998875421 1 11211 23455543 344455666653 45777777754
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.66 Score=42.63 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
.+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (260)
T 2qq5_A 5 GQVCVVTGASRGIGRGIALQLCKAGA-----TVYI----TGRHLDTLRVVAQEAQ 50 (260)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 35899999999999999999999874 2444 4566666665555554
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.065 Score=52.34 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=43.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (405)
.+++||+|||+ |.+|..++..|...+-+ ++. .+ .|++.++++..+..+ +.......+.+..+.++
T Consensus 4 ~~~~~vgiiG~-G~ig~~~~~~l~~~~~~----~lv-~v--~d~~~~~~~~~a~~~-----~~~~~~~~~~~~~~ll~~~ 70 (362)
T 1ydw_A 4 ETQIRIGVMGC-ADIARKVSRAIHLAPNA----TIS-GV--ASRSLEKAKAFATAN-----NYPESTKIHGSYESLLEDP 70 (362)
T ss_dssp --CEEEEEESC-CTTHHHHHHHHHHCTTE----EEE-EE--ECSSHHHHHHHHHHT-----TCCTTCEEESSHHHHHHCT
T ss_pred CCceEEEEECc-hHHHHHHHHHHhhCCCc----EEE-EE--EcCCHHHHHHHHHHh-----CCCCCCeeeCCHHHHhcCC
Confidence 45689999995 99999988888764321 121 12 466666665554432 11112334455455554
Q ss_pred CCcEEEEeC
Q 015501 172 DAEWALLIG 180 (405)
Q Consensus 172 dADiVIi~~ 180 (405)
++|+|+++.
T Consensus 71 ~~D~V~i~t 79 (362)
T 1ydw_A 71 EIDALYVPL 79 (362)
T ss_dssp TCCEEEECC
T ss_pred CCCEEEEcC
Confidence 599999863
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.063 Score=52.01 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...+|+||| +|.+|...+..|....-+ .+|.+ .|++ +++..+.++.+.. . .++... +..+++++||
T Consensus 120 ~~~~v~iIG-aG~~a~~~~~al~~~~~~---~~V~v----~~r~--~a~~la~~l~~~~-g--~~~~~~-~~~eav~~aD 185 (313)
T 3hdj_A 120 RSSVLGLFG-AGTQGAEHAAQLSARFAL---EAILV----HDPY--ASPEILERIGRRC-G--VPARMA-APADIAAQAD 185 (313)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCC---CEEEE----ECTT--CCHHHHHHHHHHH-T--SCEEEC-CHHHHHHHCS
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHHhCCC---cEEEE----ECCc--HHHHHHHHHHHhc-C--CeEEEe-CHHHHHhhCC
Confidence 468999999 599999999888763212 23544 4555 5555666555321 2 134455 7788999999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+|+.+-
T Consensus 186 IVi~aT 191 (313)
T 3hdj_A 186 IVVTAT 191 (313)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999863
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.58 Score=43.28 Aligned_cols=120 Identities=13% Similarity=0.044 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCC--chHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc------
Q 015501 95 KMVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP------ 166 (405)
Q Consensus 95 ~~~KI~IIGAaG--~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~------ 166 (405)
+-+.+.|+||+| .||..++..|++.|. .|.+ .+++++.++..+..+++....-..-+..-..+
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-----~Vvi----~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 75 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-----KLVF----TYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVIN 75 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC-----EEEE----EESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHH
Confidence 346788999876 799999999999885 3555 45666666655555544321110011110111
Q ss_pred -----ccccCCCcEEEEeCCcCCC-----C--CCchhhh---HHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 -----YELFEDAEWALLIGAKPRG-----P--GMERAGL---LDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~k-----~--g~~r~~l---l~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+-..|++|..+|.... + ..+..++ ++.|..-....++....+....|.||+++-
T Consensus 76 ~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 76 GFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp HHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 2345678999987764321 1 1122222 234443333444444444334688888774
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.047 Score=51.91 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-------cCcccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~ea 169 (405)
+.+.|+||++.||..++..|+..|. .|.+ .+++.++++..+.++......+..+++-. ....+.
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGA-----RVFI----TGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 5677889999999999999999886 3555 56777888877777642211110010000 011234
Q ss_pred cCCCcEEEEeCCcC-CCCCC--chh---hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 FEDAEWALLIGAKP-RGPGM--ERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 l~dADiVIi~~g~~-~k~g~--~r~---~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+-.-|++|..+|.. .+|-. +.. ..++.|+.-.-.+++..-.+-...+.||+++-
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS 160 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS 160 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence 45679999877653 23321 221 23555644333333333322223567777764
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.065 Score=53.32 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=45.6
Q ss_pred hhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCC--CCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc
Q 015501 90 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY 167 (405)
Q Consensus 90 ~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~--d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~ 167 (405)
+++|++++||+|||+ |.+|...+..+...+.+.. ...+.|.-+ .|+++++++..+.++. . ...+++..
T Consensus 20 ~~~Ms~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav-~d~~~~~a~~~a~~~~-----~---~~~y~d~~ 89 (412)
T 4gqa_A 20 FQSMSARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYAL-ADQDQAMAERHAAKLG-----A---EKAYGDWR 89 (412)
T ss_dssp -----CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEE-ECSSHHHHHHHHHHHT-----C---SEEESSHH
T ss_pred cccccccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEE-EcCCHHHHHHHHHHcC-----C---CeEECCHH
Confidence 356777799999995 9999988888775432110 011222111 4777788776665442 1 12445544
Q ss_pred cccC--CCcEEEEe
Q 015501 168 ELFE--DAEWALLI 179 (405)
Q Consensus 168 eal~--dADiVIi~ 179 (405)
+.++ +.|+|+++
T Consensus 90 ~ll~~~~vD~V~I~ 103 (412)
T 4gqa_A 90 ELVNDPQVDVVDIT 103 (412)
T ss_dssp HHHHCTTCCEEEEC
T ss_pred HHhcCCCCCEEEEC
Confidence 5554 68899886
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.04 Score=52.87 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=56.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
++|+||| .|.||..++..|...|+ .|.. +|++.+..+. +....+..+.+++||+|
T Consensus 123 ~tvGIIG-lG~IG~~vA~~l~~~G~-----~V~~----~dr~~~~~~~---------------~~~~~~l~ell~~aDiV 177 (290)
T 3gvx_A 123 KALGILG-YGGIGRRVAHLAKAFGM-----RVIA----YTRSSVDQNV---------------DVISESPADLFRQSDFV 177 (290)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTC-----EEEE----ECSSCCCTTC---------------SEECSSHHHHHHHCSEE
T ss_pred chheeec-cCchhHHHHHHHHhhCc-----EEEE----Eecccccccc---------------ccccCChHHHhhccCeE
Confidence 7999999 59999999999987664 2433 3554332211 11223567889999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
+++. |..+. ++. ++ |. +.+... +|++++|+++- ++|.-+
T Consensus 178 ~l~~--P~t~~-t~~-li--~~-------~~l~~m-k~gailIN~aRG~~vd~~a 218 (290)
T 3gvx_A 178 LIAI--PLTDK-TRG-MV--NS-------RLLANA-RKNLTIVNVARADVVSKPD 218 (290)
T ss_dssp EECC--CCCTT-TTT-CB--SH-------HHHTTC-CTTCEEEECSCGGGBCHHH
T ss_pred EEEe--ecccc-chh-hh--hH-------HHHhhh-hcCceEEEeehhcccCCcc
Confidence 9873 32221 111 11 11 123333 58899999983 555443
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.31 Score=45.55 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=61.6
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc-----
Q 015501 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----- 168 (405)
Q Consensus 96 ~~KI~IIGAa--G~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----- 168 (405)
.++|.|+||+ |.||.+++..|+..|. .|.+ .+++.+ ++....++.+.. +...-+..-..+.+
T Consensus 21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-----~V~~----~~r~~~-~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~ 89 (285)
T 2p91_A 21 GKRALITGVANERSIAYGIAKSFHREGA-----QLAF----TYATPK-LEKRVREIAKGF-GSDLVVKCDVSLDEDIKNL 89 (285)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTC-----EEEE----EESSGG-GHHHHHHHHHHT-TCCCEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-----EEEE----EeCCHH-HHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHH
Confidence 4689999998 8999999999999874 2444 233332 222233332211 10001111111121
Q ss_pred ------ccCCCcEEEEeCCcCCC-----CC--Cch---hhhHHhhHHHHHHHHHHHHhhcC-CCeEEEEeCC
Q 015501 169 ------LFEDAEWALLIGAKPRG-----PG--MER---AGLLDINGQIFAEQGKALNAVAS-RNVKVIVVGN 223 (405)
Q Consensus 169 ------al~dADiVIi~~g~~~k-----~g--~~r---~~ll~~N~~i~~~i~~~i~~~a~-p~a~vIvvtN 223 (405)
.+...|++|..+|.... +- .+. ...+..|..-...+.+.+..+-. ..+.||+++-
T Consensus 90 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS 161 (285)
T 2p91_A 90 KKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY 161 (285)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 12368999998875421 11 111 23456666555555555544321 2467777764
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.41 Score=45.24 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCC--chHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC--ccc--
Q 015501 95 KMVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PYE-- 168 (405)
Q Consensus 95 ~~~KI~IIGAaG--~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--~~e-- 168 (405)
+.+++.|+||+| .+|.+++..|+..|. .|.+ .+++.+..+.. .++.... +.. ..+..| +.+
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-----~V~~----~~r~~~~~~~~-~~~~~~~-~~~--~~~~~Dv~d~~~v 95 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-----EVAL----TYLSETFKKRV-DPLAESL-GVK--LTVPCDVSDAESV 95 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-----EEEE----EESSGGGHHHH-HHHHHHH-TCC--EEEECCTTCHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHH-HHHHHhc-CCe--EEEEcCCCCHHHH
Confidence 346899999876 999999999999875 2544 33443332222 2221111 110 111111 121
Q ss_pred ---------ccCCCcEEEEeCCcCC-----CC--CCch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 ---------LFEDAEWALLIGAKPR-----GP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 ---------al~dADiVIi~~g~~~-----k~--g~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|... .+ ..+. ...+..|..-...+.+.+..+-...+.||+++--
T Consensus 96 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~ 170 (296)
T 3k31_A 96 DNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY 170 (296)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence 2236799999887643 11 1121 1345566665566666655543245788887743
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.13 Score=50.03 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=41.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.+||+||| .|.||..++..|...|. .+.. +|++.++.+. .. .. . +... +..+.+++||+
T Consensus 155 g~~vgIIG-~G~iG~~iA~~l~~~G~-----~V~~----~d~~~~~~~~-~~---~~--g----~~~~-~l~e~l~~aDv 213 (330)
T 2gcg_A 155 QSTVGIIG-LGRIGQAIARRLKPFGV-----QRFL----YTGRQPRPEE-AA---EF--Q----AEFV-STPELAAQSDF 213 (330)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTC-----CEEE----EESSSCCHHH-HH---TT--T----CEEC-CHHHHHHHCSE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE----ECCCCcchhH-HH---hc--C----ceeC-CHHHHHhhCCE
Confidence 47999999 59999999999987664 2443 4544333321 11 11 1 1222 55677899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
|+++.
T Consensus 214 Vi~~v 218 (330)
T 2gcg_A 214 IVVAC 218 (330)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99874
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.069 Score=50.89 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=43.2
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~-la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
+++||+|||+ |.+|.. ++..|...+-+ ++. .+ .|++.++++..+.+.. . ..+++..+.++++
T Consensus 5 ~~~~igiIG~-G~~g~~~~~~~l~~~~~~----~l~-av--~d~~~~~~~~~a~~~~-----~----~~~~~~~~ll~~~ 67 (308)
T 3uuw_A 5 KNIKMGMIGL-GSIAQKAYLPILTKSERF----EFV-GA--FTPNKVKREKICSDYR-----I----MPFDSIESLAKKC 67 (308)
T ss_dssp CCCEEEEECC-SHHHHHHTHHHHTSCSSS----EEE-EE--ECSCHHHHHHHHHHHT-----C----CBCSCHHHHHTTC
T ss_pred ccCcEEEEec-CHHHHHHHHHHHHhCCCe----EEE-EE--ECCCHHHHHHHHHHcC-----C----CCcCCHHHHHhcC
Confidence 3589999995 999995 77777653221 232 12 4667777766554331 1 0134556667799
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+++
T Consensus 68 D~V~i~ 73 (308)
T 3uuw_A 68 DCIFLH 73 (308)
T ss_dssp SEEEEC
T ss_pred CEEEEe
Confidence 999987
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.12 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAG 119 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~ 119 (405)
++..+||+||| .|.+|.+++..|...
T Consensus 51 L~GiKkIgIIG-lGsMG~AmA~nLr~s 76 (525)
T 3fr7_A 51 FKGIKQIGVIG-WGSQGPAQAQNLRDS 76 (525)
T ss_dssp TTTCSEEEEEC-CTTHHHHHHHHHHHH
T ss_pred hcCCCEEEEEe-EhHHHHHHHHHHHhc
Confidence 34337999999 599999999999987
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.2 Score=50.79 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+|+| .|.||..++..|...|. .|.. .|++..+.. .+.+ + .+ .. .+..+++++||+
T Consensus 211 GktVgIiG-~G~IG~~vA~~Lka~Ga-----~Viv----~D~~p~~a~-~A~~--~---G~----~~-~sL~eal~~ADV 269 (436)
T 3h9u_A 211 GKTACVCG-YGDVGKGCAAALRGFGA-----RVVV----TEVDPINAL-QAAM--E---GY----QV-LLVEDVVEEAHI 269 (436)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHH-HHHH--T---TC----EE-CCHHHHTTTCSE
T ss_pred CCEEEEEe-eCHHHHHHHHHHHHCCC-----EEEE----ECCChhhhH-HHHH--h---CC----ee-cCHHHHHhhCCE
Confidence 47999999 59999999999988664 2433 455444332 1211 1 11 11 357789999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
|+.+.+.. ++=.. +.+... +++++|++++++.
T Consensus 270 Vilt~gt~---~iI~~--------------e~l~~M-K~gAIVINvgRg~ 301 (436)
T 3h9u_A 270 FVTTTGND---DIITS--------------EHFPRM-RDDAIVCNIGHFD 301 (436)
T ss_dssp EEECSSCS---CSBCT--------------TTGGGC-CTTEEEEECSSSG
T ss_pred EEECCCCc---CccCH--------------HHHhhc-CCCcEEEEeCCCC
Confidence 99864321 11000 112333 4889999999864
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.14 Score=46.67 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE------EecCcccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK------IGINPYEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~------i~~~~~ea 169 (405)
.+++.|+||+|.+|.+++..|+. +. .+.+ .+++.+.++..+. +.... ....++. ......+.
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~-g~-----~v~~----~~r~~~~~~~~~~-~~~~~-~~~~D~~~~~~~~~~~~~~~~ 72 (245)
T 3e9n_A 5 KKIAVVTGATGGMGIEIVKDLSR-DH-----IVYA----LGRNPEHLAALAE-IEGVE-PIESDIVKEVLEEGGVDKLKN 72 (245)
T ss_dssp -CEEEEESTTSHHHHHHHHHHTT-TS-----EEEE----EESCHHHHHHHHT-STTEE-EEECCHHHHHHTSSSCGGGTT
T ss_pred CCEEEEEcCCCHHHHHHHHHHhC-CC-----eEEE----EeCCHHHHHHHHh-hcCCc-ceecccchHHHHHHHHHHHHh
Confidence 46899999999999999999976 32 2433 3555555543321 11100 0000000 00011233
Q ss_pred cCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 FEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+...|++|..+|...... .+. ...+..|.. +.+.+.+.+++. ++.||+++--
T Consensus 73 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~---~g~iv~isS~ 134 (245)
T 3e9n_A 73 LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAA---SGCVIYINSG 134 (245)
T ss_dssp CSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEC--
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCeEEEEcCc
Confidence 457899999887542111 111 123444543 355555555553 2667776643
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.53 Score=43.81 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhh-------hHHHHHHHhhhhcCCCcceEEE-ecC-
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-------ALEGVAMELEDSLFPLLREVKI-GIN- 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~-------~l~g~a~DL~d~~~~~~~~v~i-~~~- 165 (405)
+.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+ .++..+.++.... .++.. ..|
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv 71 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGA-----NVAI----AAKSAVANPKLPGTIHSAAAAVNAAG----GQGLALKCDI 71 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCCSCCTTSCCCHHHHHHHHHHHT----SEEEEEECCT
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeccchhhhhhHHHHHHHHHHHHhcC----CeEEEEeCCC
Confidence 346899999999999999999999875 2444 233322 2344444443321 11211 111
Q ss_pred -cc-----------cccCCCcEEEEeCCcCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 166 -PY-----------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 166 -~~-----------eal~dADiVIi~~g~~~k~g---~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+. +.+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 72 ~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS 149 (274)
T 3e03_A 72 REEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQA--PNPHILTLAP 149 (274)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTS--SSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhc--CCceEEEECC
Confidence 11 12347899999887542211 111 123445544 344444555542 4678888775
Q ss_pred ch
Q 015501 224 PC 225 (405)
Q Consensus 224 P~ 225 (405)
..
T Consensus 150 ~~ 151 (274)
T 3e03_A 150 PP 151 (274)
T ss_dssp CC
T ss_pred hH
Confidence 43
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.045 Score=53.32 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=43.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEE-eccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc--
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-- 170 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~-l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-- 170 (405)
.+++||+|||+ |.+|..++..|...+- +.|. + .|++.++++..+..+. +..+++..+.+
T Consensus 3 ~~~~~vgiiG~-G~~g~~~~~~l~~~~~------~~lvav--~d~~~~~~~~~~~~~g---------~~~~~~~~~~l~~ 64 (354)
T 3db2_A 3 YNPVGVAAIGL-GRWAYVMADAYTKSEK------LKLVTC--YSRTEDKREKFGKRYN---------CAGDATMEALLAR 64 (354)
T ss_dssp CCCEEEEEECC-SHHHHHHHHHHTTCSS------EEEEEE--ECSSHHHHHHHHHHHT---------CCCCSSHHHHHHC
T ss_pred CCcceEEEEcc-CHHHHHHHHHHHhCCC------cEEEEE--ECCCHHHHHHHHHHcC---------CCCcCCHHHHhcC
Confidence 45689999995 9999999888876421 2221 2 4666677665554321 11234555666
Q ss_pred CCCcEEEEe
Q 015501 171 EDAEWALLI 179 (405)
Q Consensus 171 ~dADiVIi~ 179 (405)
.++|+|+++
T Consensus 65 ~~~D~V~i~ 73 (354)
T 3db2_A 65 EDVEMVIIT 73 (354)
T ss_dssp SSCCEEEEC
T ss_pred CCCCEEEEe
Confidence 579999987
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.32 Score=45.12 Aligned_cols=112 Identities=12% Similarity=0.061 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcc--------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~-------- 167 (405)
.++|.|+||+|.||.+++..|++.|. .|.+ .+++.+.+.....+.. .. -+..-..+.
T Consensus 27 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~-~~-----~~~~Dv~~~~~v~~~~~ 91 (260)
T 3gem_A 27 SAPILITGASQRVGLHCALRLLEHGH-----RVII----SYRTEHASVTELRQAG-AV-----ALYGDFSCETGIMAFID 91 (260)
T ss_dssp CCCEEESSTTSHHHHHHHHHHHHTTC-----CEEE----EESSCCHHHHHHHHHT-CE-----EEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHhcC-Ce-----EEECCCCCHHHHHHHHH
Confidence 46899999999999999999999875 2554 3444444332222211 00 000001111
Q ss_pred ---cccCCCcEEEEeCCcCCCC--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 ---ELFEDAEWALLIGAKPRGP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 ---eal~dADiVIi~~g~~~k~--g~~r~---~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|..... ..+.. ..+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 92 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 158 (260)
T 3gem_A 92 LLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTAS--EVADIVHISDD 158 (260)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECCG
T ss_pred HHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcEEEEECCh
Confidence 2234789999988754322 12221 23445533 344444555542 45788888754
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.029 Score=54.22 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=40.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (405)
.+++||+|||+ |.+|..++..|...+-+ ++. .+ .|++.++++..+..+ +. ...+.+..+.+.
T Consensus 3 m~~~rigiiG~-G~ig~~~~~~l~~~~~~----~~~-av--~d~~~~~~~~~a~~~-----~~---~~~~~~~~~ll~~~ 66 (329)
T 3evn_A 3 LSKVRYGVVST-AKVAPRFIEGVRLAGNG----EVV-AV--SSRTLESAQAFANKY-----HL---PKAYDKLEDMLADE 66 (329)
T ss_dssp --CEEEEEEBC-CTTHHHHHHHHHHHCSE----EEE-EE--ECSCSSTTCC---CC-----CC---SCEESCHHHHHTCT
T ss_pred CCceEEEEEec-hHHHHHHHHHHHhCCCc----EEE-EE--EcCCHHHHHHHHHHc-----CC---CcccCCHHHHhcCC
Confidence 35789999995 99999998888764321 121 12 456556554333211 11 023455556666
Q ss_pred CCcEEEEe
Q 015501 172 DAEWALLI 179 (405)
Q Consensus 172 dADiVIi~ 179 (405)
++|+|+++
T Consensus 67 ~~D~V~i~ 74 (329)
T 3evn_A 67 SIDVIYVA 74 (329)
T ss_dssp TCCEEEEC
T ss_pred CCCEEEEC
Confidence 78999986
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.079 Score=50.71 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=39.9
Q ss_pred cCCCEEEEEcCCCchHHH-HHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc-C
Q 015501 94 KKMVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-E 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~-la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal-~ 171 (405)
.+++||+|||+ |.+|.. ++..|...+-+ ++. .+ .|++.++++..+..+. . + . .++++++ .
T Consensus 3 m~~~~vgiiG~-G~~g~~~~~~~l~~~~~~----~lv-av--~d~~~~~~~~~~~~~g--~-~------~-~~~~~~l~~ 64 (319)
T 1tlt_A 3 LKKLRIGVVGL-GGIAQKAWLPVLAAASDW----TLQ-GA--WSPTRAKALPICESWR--I-P------Y-ADSLSSLAA 64 (319)
T ss_dssp --CEEEEEECC-STHHHHTHHHHHHSCSSE----EEE-EE--ECSSCTTHHHHHHHHT--C-C------B-CSSHHHHHT
T ss_pred CCcceEEEECC-CHHHHHHHHHHHHhCCCe----EEE-EE--ECCCHHHHHHHHHHcC--C-C------c-cCcHHHhhc
Confidence 45689999995 999986 88877653211 222 12 4566666654443321 1 1 2 2344555 6
Q ss_pred CCcEEEEe
Q 015501 172 DAEWALLI 179 (405)
Q Consensus 172 dADiVIi~ 179 (405)
++|+|+++
T Consensus 65 ~~D~V~i~ 72 (319)
T 1tlt_A 65 SCDAVFVH 72 (319)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEe
Confidence 89999987
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.061 Score=52.18 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=43.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEE-eccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--C
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~-l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--d 172 (405)
|+||+|||+ |.+|..++..|...+- +.+. + .|++.++++..+..+. . ...+.+..+.++ +
T Consensus 2 ~~rvgiIG~-G~~g~~~~~~l~~~~~------~~l~av--~d~~~~~~~~~~~~~~-----~---~~~~~~~~~ll~~~~ 64 (344)
T 3ezy_A 2 SLRIGVIGL-GRIGTIHAENLKMIDD------AILYAI--SDVREDRLREMKEKLG-----V---EKAYKDPHELIEDPN 64 (344)
T ss_dssp CEEEEEECC-SHHHHHHHHHGGGSTT------EEEEEE--ECSCHHHHHHHHHHHT-----C---SEEESSHHHHHHCTT
T ss_pred eeEEEEEcC-CHHHHHHHHHHHhCCC------cEEEEE--ECCCHHHHHHHHHHhC-----C---CceeCCHHHHhcCCC
Confidence 479999995 9999999888876321 2221 2 4666676665554321 1 123455556666 7
Q ss_pred CcEEEEeC
Q 015501 173 AEWALLIG 180 (405)
Q Consensus 173 ADiVIi~~ 180 (405)
+|+|+++.
T Consensus 65 ~D~V~i~t 72 (344)
T 3ezy_A 65 VDAVLVCS 72 (344)
T ss_dssp CCEEEECS
T ss_pred CCEEEEcC
Confidence 99999863
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.11 Score=50.83 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=41.0
Q ss_pred ccCCCEEEEEcCCCchHH-HHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 93 WKKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs-~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
|.+++||+|||+ |.+|. .++..+...++ +.+.+ .|++.++++..+..+. ....+++..+.+.
T Consensus 23 Mm~~irvgiiG~-G~~~~~~~~~~~~~~~~----~lvav----~d~~~~~a~~~a~~~~--------~~~~~~~~~~ll~ 85 (361)
T 3u3x_A 23 MMDELRFAAVGL-NHNHIYGQVNCLLRAGA----RLAGF----HEKDDALAAEFSAVYA--------DARRIATAEEILE 85 (361)
T ss_dssp ---CCEEEEECC-CSTTHHHHHHHHHHTTC----EEEEE----ECSCHHHHHHHHHHSS--------SCCEESCHHHHHT
T ss_pred hccCcEEEEECc-CHHHHHHHHHHhhcCCc----EEEEE----EcCCHHHHHHHHHHcC--------CCcccCCHHHHhc
Confidence 344689999995 99985 56666654332 11233 4677777766654431 1224455555565
Q ss_pred C--CcEEEEe
Q 015501 172 D--AEWALLI 179 (405)
Q Consensus 172 d--ADiVIi~ 179 (405)
+ .|+|+++
T Consensus 86 ~~~vD~V~I~ 95 (361)
T 3u3x_A 86 DENIGLIVSA 95 (361)
T ss_dssp CTTCCEEEEC
T ss_pred CCCCCEEEEe
Confidence 4 8999986
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.071 Score=48.11 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.+++.|+||+|.||.+++..|+..|. .+.+ .+++.+ .|+.+.. .. ....+.+...|+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~------~D~~~~~-~v-------~~~~~~~g~id~ 62 (223)
T 3uce_A 6 KTVYVVLGGTSGIGAELAKQLESEHT-----IVHV----ASRQTG------LDISDEK-SV-------YHYFETIGAFDH 62 (223)
T ss_dssp CEEEEEETTTSHHHHHHHHHHCSTTE-----EEEE----ESGGGT------CCTTCHH-HH-------HHHHHHHCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----ecCCcc------cCCCCHH-HH-------HHHHHHhCCCCE
Confidence 46789999999999999999998764 2433 233322 2322211 00 001122356789
Q ss_pred EEEeCCcCC--CCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 176 ALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 176 VIi~~g~~~--k~g--~~r---~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+|..+|... ++- .+. ...+..|..-...+.+.+..+-.+.+.|++++--
T Consensus 63 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~ 118 (223)
T 3uce_A 63 LIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM 118 (223)
T ss_dssp EEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred EEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence 998877532 221 121 2345667665666666665543235678888743
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.62 Score=45.34 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhh-------HHHHHHHhhhhcCCCcceEEE-ecC--
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-------LEGVAMELEDSLFPLLREVKI-GIN-- 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~-------l~g~a~DL~d~~~~~~~~v~i-~~~-- 165 (405)
.++|.|+||+|.||.+++..|++.|. .|.+ .+++.+. ++..+.++.... .++.. ..|
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga-----~Vvl----~~r~~~~~~~l~~~l~~~~~~~~~~g----~~~~~~~~Dv~ 111 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGA-----NIVI----AAKTAQPHPKLLGTIYTAAEEIEAVG----GKALPCIVDVR 111 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----EESCCSCCSSSCCCHHHHHHHHHHTT----CEEEEEECCTT
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCC-----EEEE----EECChhhhhhhHHHHHHHHHHHHhcC----CeEEEEEccCC
Confidence 46899999999999999999999875 2444 2333222 344444444321 12221 111
Q ss_pred ccc-----------ccCCCcEEEEeCCcCC-CCC--Cch---hhhHHhhHHHH----HHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 PYE-----------LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQIF----AEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 ~~e-----------al~dADiVIi~~g~~~-k~g--~~r---~~ll~~N~~i~----~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+ .+...|++|..+|... .+- .+. ...+..|..-. +.+.+.+++ ...+.||+++-+
T Consensus 112 d~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~--~~~g~IV~iSS~ 189 (346)
T 3kvo_A 112 DEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKK--SKVAHILNISPP 189 (346)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CSSCEEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--CCCCEEEEECCH
Confidence 111 2237899999887532 111 111 12355565433 344444444 245788888865
Q ss_pred h
Q 015501 225 C 225 (405)
Q Consensus 225 ~ 225 (405)
.
T Consensus 190 ~ 190 (346)
T 3kvo_A 190 L 190 (346)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.22 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
+||+|+||+|.+|..++..|...+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p 32 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHP 32 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCS
T ss_pred ceEEEECcCCHHHHHHHHHHhcCC
Confidence 799999999999999999887653
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.062 Score=50.58 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D 148 (405)
+.+++.|+||+|.||.+++..|+..|. .|.+ .+++.++++....+
T Consensus 4 ~gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~ 48 (281)
T 3zv4_A 4 TGEVALITGGASGLGRALVDRFVAEGA-----RVAV----LDKSAERLRELEVA 48 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHH
Confidence 346899999999999999999999875 2544 46666666654433
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.22 Score=45.76 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh---cccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAA---GEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~---~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
.+++.|+||+|.||.+++..|++ .|. .|.+ .+++.+.++..+.++..
T Consensus 6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~-----~V~~----~~r~~~~~~~~~~~l~~ 55 (259)
T 1oaa_A 6 CAVCVLTGASRGFGRALAPQLARLLSPGS-----VMLV----SARSESMLRQLKEELGA 55 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTC-----EEEE----EESCHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHhhcCCC-----eEEE----EeCCHHHHHHHHHHHHh
Confidence 35789999999999999999998 554 2444 45666666666655543
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.11 Score=51.12 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..+|..|...|+ .|.. +|++... ..+.+. . +....+..+.+++||+
T Consensus 160 g~tvGIIG-lG~IG~~vA~~l~~~G~-----~V~~----~d~~~~~--~~~~~~-----g----~~~~~~l~ell~~aDi 218 (352)
T 3gg9_A 160 GQTLGIFG-YGKIGQLVAGYGRAFGM-----NVLV----WGRENSK--ERARAD-----G----FAVAESKDALFEQSDV 218 (352)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSHHHH--HHHHHT-----T----CEECSSHHHHHHHCSE
T ss_pred CCEEEEEe-ECHHHHHHHHHHHhCCC-----EEEE----ECCCCCH--HHHHhc-----C----ceEeCCHHHHHhhCCE
Confidence 47999999 69999999999987664 2332 4554321 111111 1 1222356788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+. ++. ++ |.. .+... ++++++|+++.
T Consensus 219 V~l~~--Plt~~-t~~-li--~~~-------~l~~m-k~gailIN~aR 252 (352)
T 3gg9_A 219 LSVHL--RLNDE-TRS-II--TVA-------DLTRM-KPTALFVNTSR 252 (352)
T ss_dssp EEECC--CCSTT-TTT-CB--CHH-------HHTTS-CTTCEEEECSC
T ss_pred EEEec--cCcHH-HHH-hh--CHH-------HHhhC-CCCcEEEECCC
Confidence 99873 32221 111 11 111 23333 58899999984
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.4 Score=46.08 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecc-----ccchhhhHHHHHHHhhhhcCCCcceEEEecCcc---
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-----SERSLQALEGVAMELEDSLFPLLREVKIGINPY--- 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~-----~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~--- 167 (405)
.+++.|+||+|.||.+++..|+..|. .|.+...+ ..++.++++..+.++.... . .+..-..+.
T Consensus 9 gk~~lVTGas~GIG~~~a~~La~~Ga-----~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~-~---~~~~D~~~~~~~ 79 (319)
T 1gz6_A 9 GRVVLVTGAGGGLGRAYALAFAERGA-----LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-G---KAVANYDSVEAG 79 (319)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-C---EEEEECCCGGGH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEcCCcccccccCCHHHHHHHHHHHHhhC-C---eEEEeCCCHHHH
Confidence 46899999999999999999999875 24442211 1234455665555554321 1 111111111
Q ss_pred --------cccCCCcEEEEeCCcCCCCC---Cchh---hhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 168 --------ELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 168 --------eal~dADiVIi~~g~~~k~g---~~r~---~ll~~N~~i----~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+.+...|++|..+|...... ++.. ..+..|..- .+.+.+.+++. ..+.||+++--
T Consensus 80 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~grIV~vsS~ 152 (319)
T 1gz6_A 80 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ--NYGRIIMTASA 152 (319)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECCh
Confidence 22447899999887643221 1211 234455443 44444555553 45788888754
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=92.99 E-value=0.25 Score=44.91 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=59.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C-------ccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N-------PYE 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~-------~~e 168 (405)
+++.|+||+|.+|.+++..|+..|. .+.+ .+++.+.+ ..++. .. .. ...++. + ..+
T Consensus 3 k~vlVTGas~giG~~~a~~l~~~G~-----~V~~----~~r~~~~~---~~~~~-~~-~~--~~D~~~~~~~~~~~~~~~ 66 (239)
T 2ekp_A 3 RKALVTGGSRGIGRAIAEALVARGY-----RVAI----ASRNPEEA---AQSLG-AV-PL--PTDLEKDDPKGLVKRALE 66 (239)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCHHH---HHHHT-CE-EE--ECCTTTSCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHH---HHhhC-cE-EE--ecCCchHHHHHHHHHHHH
Confidence 5799999999999999999999874 2444 34443332 12221 00 00 000100 0 012
Q ss_pred ccCCCcEEEEeCCcCC-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 169 LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 169 al~dADiVIi~~g~~~-k~g--~~r---~~ll~~N~~----i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 67 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 130 (239)
T 2ekp_A 67 ALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA--GWGRVLFIGSV 130 (239)
T ss_dssp HHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECch
Confidence 3457899999877532 121 121 123444433 445555555553 35788887754
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.21 Score=50.77 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.-++|+|+| .|.||..+|..+...|. .|.. .|+++.+.....+ + .+ .+ .+..+.++.||
T Consensus 246 ~GKTVgVIG-~G~IGr~vA~~lrafGa-----~Viv----~d~dp~~a~~A~~---~---G~----~v-v~LeElL~~AD 304 (464)
T 3n58_A 246 AGKVAVVCG-YGDVGKGSAQSLAGAGA-----RVKV----TEVDPICALQAAM---D---GF----EV-VTLDDAASTAD 304 (464)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHH---T---TC----EE-CCHHHHGGGCS
T ss_pred cCCEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE----EeCCcchhhHHHh---c---Cc----ee-ccHHHHHhhCC
Confidence 357999999 59999999999887664 2433 3444333221111 1 11 11 24578899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+|+.+.+. .++ -|.+ .+... ++++++||++..
T Consensus 305 IVv~atgt---~~l-------I~~e-------~l~~M-K~GAILINvGRg 336 (464)
T 3n58_A 305 IVVTTTGN---KDV-------ITID-------HMRKM-KDMCIVGNIGHF 336 (464)
T ss_dssp EEEECCSS---SSS-------BCHH-------HHHHS-CTTEEEEECSSS
T ss_pred EEEECCCC---ccc-------cCHH-------HHhcC-CCCeEEEEcCCC
Confidence 99986432 111 1111 22332 488999999965
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.12 Score=49.98 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=43.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHH-hcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC-
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~-~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~- 171 (405)
.+++||+|||+ |.+|..++..|. ..+-+ ++. .+ .|++.++++..+.++ +. . .+..+..+.++
T Consensus 6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~----~~v-av--~d~~~~~~~~~a~~~-----g~--~-~~~~~~~~~l~~ 69 (346)
T 3cea_A 6 RKPLRAAIIGL-GRLGERHARHLVNKIQGV----KLV-AA--CALDSNQLEWAKNEL-----GV--E-TTYTNYKDMIDT 69 (346)
T ss_dssp CCCEEEEEECC-STTHHHHHHHHHHTCSSE----EEE-EE--ECSCHHHHHHHHHTT-----CC--S-EEESCHHHHHTT
T ss_pred CCcceEEEEcC-CHHHHHHHHHHHhcCCCc----EEE-EE--ecCCHHHHHHHHHHh-----CC--C-cccCCHHHHhcC
Confidence 35789999995 999999888887 43211 221 12 466666665444321 11 0 23445455565
Q ss_pred -CCcEEEEeC
Q 015501 172 -DAEWALLIG 180 (405)
Q Consensus 172 -dADiVIi~~ 180 (405)
++|+|+++.
T Consensus 70 ~~~D~V~i~t 79 (346)
T 3cea_A 70 ENIDAIFIVA 79 (346)
T ss_dssp SCCSEEEECS
T ss_pred CCCCEEEEeC
Confidence 699999873
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.14 Score=49.52 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
.++|+||| .|.||..++..|...|. .|.. +|+ +.+.. .+.++ . +....+..+.+++||
T Consensus 146 g~~vgIIG-~G~IG~~~A~~l~~~G~-----~V~~----~d~~~~~~~--~~~~~-----g----~~~~~~l~ell~~aD 204 (320)
T 1gdh_A 146 NKTLGIYG-FGSIGQALAKRAQGFDM-----DIDY----FDTHRASSS--DEASY-----Q----ATFHDSLDSLLSVSQ 204 (320)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE----ECSSCCCHH--HHHHH-----T----CEECSSHHHHHHHCS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE----ECCCCcChh--hhhhc-----C----cEEcCCHHHHHhhCC
Confidence 47999999 59999999999986553 2433 444 43332 12221 1 112224567889999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+|+++. |..+. ++ .++. . ..+... ++++++|+++.
T Consensus 205 vVil~~--p~~~~-t~-~~i~------~---~~l~~m-k~gailIn~ar 239 (320)
T 1gdh_A 205 FFSLNA--PSTPE-TR-YFFN------K---ATIKSL-PQGAIVVNTAR 239 (320)
T ss_dssp EEEECC--CCCTT-TT-TCBS------H---HHHTTS-CTTEEEEECSC
T ss_pred EEEEec--cCchH-HH-hhcC------H---HHHhhC-CCCcEEEECCC
Confidence 999873 32222 11 1111 1 122333 57899999885
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.32 Score=47.37 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
+||+|+||+|.+|..++..|.+++
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~ 24 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARN 24 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 589999999999999999888654
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.21 Score=49.66 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..+|..|...|+ .+.. .|+..+.. .... . ..+..+.+++||+
T Consensus 119 gktvGIIG-lG~IG~~vA~~l~a~G~-----~V~~----~d~~~~~~-------~~~~-~-------~~sl~ell~~aDi 173 (381)
T 3oet_A 119 DRTIGIVG-VGNVGSRLQTRLEALGI-----RTLL----CDPPRAAR-------GDEG-D-------FRTLDELVQEADV 173 (381)
T ss_dssp GCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECHHHHHT-------TCCS-C-------BCCHHHHHHHCSE
T ss_pred CCEEEEEe-ECHHHHHHHHHHHHCCC-----EEEE----ECCChHHh-------ccCc-c-------cCCHHHHHhhCCE
Confidence 47999999 69999999999987664 2333 35432211 0110 1 1356788899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
|++..
T Consensus 174 V~l~~ 178 (381)
T 3oet_A 174 LTFHT 178 (381)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99863
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.048 Score=51.22 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=43.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||.|||| |.+|.+++..|+..|. .+|.+ .+++.++++..+.++ ......+..+.++++|+||
T Consensus 110 ~vliiGa-Gg~a~ai~~~L~~~G~----~~I~v----~nR~~~ka~~la~~~---------~~~~~~~~~~~~~~aDiVI 171 (253)
T 3u62_A 110 PVVVVGA-GGAARAVIYALLQMGV----KDIWV----VNRTIERAKALDFPV---------KIFSLDQLDEVVKKAKSLF 171 (253)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTC----CCEEE----EESCHHHHHTCCSSC---------EEEEGGGHHHHHHTCSEEE
T ss_pred eEEEECc-HHHHHHHHHHHHHcCC----CEEEE----EeCCHHHHHHHHHHc---------ccCCHHHHHhhhcCCCEEE
Confidence 9999995 9999999999998775 23655 567666554332211 1111233456788999999
Q ss_pred EeC
Q 015501 178 LIG 180 (405)
Q Consensus 178 i~~ 180 (405)
.+-
T Consensus 172 nat 174 (253)
T 3u62_A 172 NTT 174 (253)
T ss_dssp ECS
T ss_pred ECC
Confidence 863
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.12 Score=48.27 Aligned_cols=28 Identities=14% Similarity=-0.039 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+.++|.|+||+|.||.+++..|++.|.
T Consensus 12 ~~~k~vlVTGas~GIG~aia~~l~~~G~ 39 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGLAVVDALVRYGA 39 (269)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 3457999999999999999999999875
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.14 Score=48.51 Aligned_cols=62 Identities=19% Similarity=0.108 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..++.|+|| |.+|..++..|...| . +|.+ .+++.++++..+ ++. +... .++++.++|+
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G-~----~v~V----~nRt~~ka~~la-~~~---------~~~~--~~~~l~~~Di 175 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG-L----QVSV----LNRSSRGLDFFQ-RLG---------CDCF--MEPPKSAFDL 175 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-C----EEEE----ECSSCTTHHHHH-HHT---------CEEE--SSCCSSCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-C----EEEE----EeCCHHHHHHHH-HCC---------CeEe--cHHHhccCCE
Confidence 579999995 999999999999877 2 3555 577778877776 543 1111 2445569999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
||.+
T Consensus 176 VIna 179 (269)
T 3phh_A 176 IINA 179 (269)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9976
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.059 Score=52.69 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.+||+||| .|.||..++..|...|. .|.. +|++.+... . +....+..+.+++||+
T Consensus 164 g~~vgIIG-~G~iG~~vA~~l~~~G~-----~V~~----~dr~~~~~~-----------g----~~~~~~l~ell~~aDv 218 (333)
T 3ba1_A 164 GKRVGIIG-LGRIGLAVAERAEAFDC-----PISY----FSRSKKPNT-----------N----YTYYGSVVELASNSDI 218 (333)
T ss_dssp TCCEEEEC-CSHHHHHHHHHHHTTTC-----CEEE----ECSSCCTTC-----------C----SEEESCHHHHHHTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----ECCCchhcc-----------C----ceecCCHHHHHhcCCE
Confidence 46899999 59999999999987664 2443 344433221 1 1223456678899999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
|+++.
T Consensus 219 Vil~v 223 (333)
T 3ba1_A 219 LVVAC 223 (333)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99873
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.098 Score=50.35 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=42.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dA 173 (405)
|+||+|||+ |.+|..++..|...+-+ ++. .+ .|++.++++..+..+ . +. ..+..+.++ ++
T Consensus 3 ~~~vgiiG~-G~~g~~~~~~l~~~~~~----~l~-av--~d~~~~~~~~~~~~~-----~----~~-~~~~~~~l~~~~~ 64 (331)
T 4hkt_A 3 TVRFGLLGA-GRIGKVHAKAVSGNADA----RLV-AV--ADAFPAAAEAIAGAY-----G----CE-VRTIDAIEAAADI 64 (331)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCTTE----EEE-EE--ECSSHHHHHHHHHHT-----T----CE-ECCHHHHHHCTTC
T ss_pred ceEEEEECC-CHHHHHHHHHHhhCCCc----EEE-EE--ECCCHHHHHHHHHHh-----C----CC-cCCHHHHhcCCCC
Confidence 579999995 99999999988874321 222 12 466666666554432 1 12 445556666 79
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+++
T Consensus 65 D~V~i~ 70 (331)
T 4hkt_A 65 DAVVIC 70 (331)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 999986
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=92.60 E-value=0.83 Score=38.58 Aligned_cols=118 Identities=13% Similarity=-0.030 Sum_probs=64.6
Q ss_pred hccCCCEEEEEcCC---CchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc
Q 015501 92 SWKKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE 168 (405)
Q Consensus 92 ~~~~~~KI~IIGAa---G~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e 168 (405)
.+.++.+|+||||+ |.+|+.++..|...|+ + + ++.+..+.. .++. .+.++.+..+
T Consensus 9 ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~-----~--v----~~vnp~~~~---~~i~--------G~~~~~sl~e 66 (140)
T 1iuk_A 9 YLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGY-----R--V----LPVNPRFQG---EELF--------GEEAVASLLD 66 (140)
T ss_dssp HHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTC-----E--E----EEECGGGTT---SEET--------TEECBSSGGG
T ss_pred HHcCCCEEEEECCCCCCCChHHHHHHHHHHCCC-----E--E----EEeCCCccc---CcCC--------CEEecCCHHH
Confidence 34357899999976 7999999999988775 1 2 233333211 1111 1233333344
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCcee-ec
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH-AL 247 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig-~g 247 (405)
.-...|+++++.. .+...++++.+.+. +..++++..+-..+-+..++.+ . ++ +++| -|
T Consensus 67 l~~~vDlavi~vp----------------~~~~~~v~~~~~~~-gi~~i~~~~g~~~~~~~~~a~~-~-Gi--r~vgpnc 125 (140)
T 1iuk_A 67 LKEPVDILDVFRP----------------PSALMDHLPEVLAL-RPGLVWLQSGIRHPEFEKALKE-A-GI--PVVADRC 125 (140)
T ss_dssp CCSCCSEEEECSC----------------HHHHTTTHHHHHHH-CCSCEEECTTCCCHHHHHHHHH-T-TC--CEEESCC
T ss_pred CCCCCCEEEEEeC----------------HHHHHHHHHHHHHc-CCCEEEEcCCcCHHHHHHHHHH-c-CC--EEEcCCc
Confidence 4457999998732 23344444444444 3556555544455555555543 3 34 7777 34
Q ss_pred chhhH
Q 015501 248 TRLDE 252 (405)
Q Consensus 248 t~LDs 252 (405)
..+..
T Consensus 126 ~g~~~ 130 (140)
T 1iuk_A 126 LMVEH 130 (140)
T ss_dssp HHHHH
T ss_pred cceEC
Confidence 44333
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.43 Score=44.78 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc--CC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--ED 172 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal--~d 172 (405)
+.+++.|+|| |.+|..++..|+..|. .|.+ .+++.++++..+.++... . .+... +.+++ .+
T Consensus 118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~-----~V~v----~~R~~~~~~~la~~~~~~--~---~~~~~--~~~~~~~~~ 180 (271)
T 1nyt_A 118 PGLRILLIGA-GGASRGVLLPLLSLDC-----AVTI----TNRTVSRAEELAKLFAHT--G---SIQAL--SMDELEGHE 180 (271)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHHHTGGG--S---SEEEC--CSGGGTTCC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHhhcc--C---CeeEe--cHHHhccCC
Confidence 3579999996 9999999999998772 2554 567777777666555321 1 22221 22344 48
Q ss_pred CcEEEEeCCcC
Q 015501 173 AEWALLIGAKP 183 (405)
Q Consensus 173 ADiVIi~~g~~ 183 (405)
+|+||.+.+.+
T Consensus 181 ~DivVn~t~~~ 191 (271)
T 1nyt_A 181 FDLIINATSSG 191 (271)
T ss_dssp CSEEEECCSCG
T ss_pred CCEEEECCCCC
Confidence 99999886643
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.15 Score=50.06 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=56.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
++|+||| .|.||..+|..|...|+ .|.. +|+.....+ .. .. +....+..+.+++||+|
T Consensus 174 ktvGIIG-lG~IG~~vA~~l~~~G~-----~V~~----~dr~~~~~~-~~----~g-------~~~~~~l~ell~~sDvV 231 (345)
T 4g2n_A 174 RRLGIFG-MGRIGRAIATRARGFGL-----AIHY----HNRTRLSHA-LE----EG-------AIYHDTLDSLLGASDIF 231 (345)
T ss_dssp CEEEEES-CSHHHHHHHHHHHTTTC-----EEEE----ECSSCCCHH-HH----TT-------CEECSSHHHHHHTCSEE
T ss_pred CEEEEEE-eChhHHHHHHHHHHCCC-----EEEE----ECCCCcchh-hh----cC-------CeEeCCHHHHHhhCCEE
Confidence 7999999 69999999999987554 2332 455432221 11 11 11223567889999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHHH
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~t 229 (405)
++.. |..+. ++ .++ |.+ .+... +|++++|+++. .+|.-+
T Consensus 232 ~l~~--Plt~~-T~-~li--~~~-------~l~~m-k~gailIN~aRG~~vde~a 272 (345)
T 4g2n_A 232 LIAA--PGRPE-LK-GFL--DHD-------RIAKI-PEGAVVINISRGDLINDDA 272 (345)
T ss_dssp EECS--CCCGG-GT-TCB--CHH-------HHHHS-CTTEEEEECSCGGGBCHHH
T ss_pred EEec--CCCHH-HH-HHh--CHH-------HHhhC-CCCcEEEECCCCchhCHHH
Confidence 9873 22111 11 111 212 23333 58899999984 455444
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=92.56 E-value=0.36 Score=44.74 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.||.+++..|+..|.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~ 33 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGS 33 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.11 Score=53.07 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC------ccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN------PYE 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~------~~e 168 (405)
+.|||.|+|| |.+|+++|..|...+. ++.+ +|.++++++....++ +. .+..+.. ...
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~-----~v~v----Id~d~~~~~~~~~~~-~~------~~i~Gd~~~~~~L~~A 64 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENN-----DITI----VDKDGDRLRELQDKY-DL------RVVNGHASHPDVLHEA 64 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTE-----EEEE----EESCHHHHHHHHHHS-SC------EEEESCTTCHHHHHHH
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHhc-Cc------EEEEEcCCCHHHHHhc
Confidence 4689999995 9999999999887654 4555 677777776444322 11 1222111 234
Q ss_pred ccCCCcEEEEe
Q 015501 169 LFEDAEWALLI 179 (405)
Q Consensus 169 al~dADiVIi~ 179 (405)
.+++||.+|.+
T Consensus 65 gi~~ad~~ia~ 75 (461)
T 4g65_A 65 GAQDADMLVAV 75 (461)
T ss_dssp TTTTCSEEEEC
T ss_pred CCCcCCEEEEE
Confidence 57899988763
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.18 Score=48.02 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.++|+|||+ |.+|..++..|...|. .|.. +|++.++++.. .++ .. .+.-..+..+.+++||
T Consensus 156 ~g~~v~IiG~-G~iG~~~a~~l~~~G~-----~V~~----~d~~~~~~~~~-~~~-----g~--~~~~~~~l~~~l~~aD 217 (300)
T 2rir_A 156 HGSQVAVLGL-GRTGMTIARTFAALGA-----NVKV----GARSSAHLARI-TEM-----GL--VPFHTDELKEHVKDID 217 (300)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHH-HHT-----TC--EEEEGGGHHHHSTTCS
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHH-HHC-----CC--eEEchhhHHHHhhCCC
Confidence 3589999995 9999999999987664 2443 45655544321 111 11 1111234567789999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-Cchh
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCN 226 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d 226 (405)
+|+++... ++ + |.. .+... ++++++|+++ +|.+
T Consensus 218 vVi~~~p~----~~-----i--~~~-------~~~~m-k~g~~lin~a~g~~~ 251 (300)
T 2rir_A 218 ICINTIPS----MI-----L--NQT-------VLSSM-TPKTLILDLASRPGG 251 (300)
T ss_dssp EEEECCSS----CC-----B--CHH-------HHTTS-CTTCEEEECSSTTCS
T ss_pred EEEECCCh----hh-----h--CHH-------HHHhC-CCCCEEEEEeCCCCC
Confidence 99987432 11 1 111 22333 4788998887 4543
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.19 Score=48.71 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch---hhhHHHHHHHhhhhcCCCcceEEEe-cCc----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS---LQALEGVAMELEDSLFPLLREVKIG-INP---- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~---~~~l~g~a~DL~d~~~~~~~~v~i~-~~~---- 166 (405)
+..++.|+|| |.+|..++..|+..|. ..|.+ .+++ .++++..+.++.... +. .+... ..+
T Consensus 147 ~gk~~lVlGA-GGaaraia~~L~~~G~----~~v~v----~nRt~~~~~~a~~la~~~~~~~-~~--~v~~~~~~~l~~~ 214 (312)
T 3t4e_A 147 RGKTMVLLGA-GGAATAIGAQAAIEGI----KEIKL----FNRKDDFFEKAVAFAKRVNENT-DC--VVTVTDLADQHAF 214 (312)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC----SEEEE----EECSSTHHHHHHHHHHHHHHHS-SC--EEEEEETTCHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHcCC----CEEEE----EECCCchHHHHHHHHHHhhhcc-Cc--ceEEechHhhhhh
Confidence 3579999995 9999999999998775 23554 5677 677777777665432 21 22222 222
Q ss_pred ccccCCCcEEEEe
Q 015501 167 YELFEDAEWALLI 179 (405)
Q Consensus 167 ~eal~dADiVIi~ 179 (405)
.+.+.++|+||.+
T Consensus 215 ~~~l~~~DiIINa 227 (312)
T 3t4e_A 215 TEALASADILTNG 227 (312)
T ss_dssp HHHHHHCSEEEEC
T ss_pred HhhccCceEEEEC
Confidence 4567899999976
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.11 Score=50.66 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCCchHH-HHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--
Q 015501 95 KMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs-~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-- 171 (405)
+++||+||| +|.+|. .++..|...+-+ ++. .+ .|++.++++..+..+ . +....+..+.++
T Consensus 26 ~~~rigiIG-~G~~g~~~~~~~l~~~~~~----~l~-av--~d~~~~~~~~~a~~~-----g----~~~~~~~~~ll~~~ 88 (350)
T 3rc1_A 26 NPIRVGVIG-CADIAWRRALPALEAEPLT----EVT-AI--ASRRWDRAKRFTERF-----G----GEPVEGYPALLERD 88 (350)
T ss_dssp CCEEEEEES-CCHHHHHTHHHHHHHCTTE----EEE-EE--EESSHHHHHHHHHHH-----C----SEEEESHHHHHTCT
T ss_pred CceEEEEEc-CcHHHHHHHHHHHHhCCCe----EEE-EE--EcCCHHHHHHHHHHc-----C----CCCcCCHHHHhcCC
Confidence 468999999 599998 688888765321 221 12 466666666554432 1 122344455555
Q ss_pred CCcEEEEe
Q 015501 172 DAEWALLI 179 (405)
Q Consensus 172 dADiVIi~ 179 (405)
+.|+|+++
T Consensus 89 ~~D~V~i~ 96 (350)
T 3rc1_A 89 DVDAVYVP 96 (350)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEC
Confidence 58999986
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=92.43 E-value=0.16 Score=50.82 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..+|+|+|+ |.+|..++..|...|. ..|.+ .+++.++++..+.++.. .+.-..+..+.+.++|
T Consensus 166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~----~~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~l~~~l~~aD 229 (404)
T 1gpj_A 166 HDKTVLVVGA-GEMGKTVAKSLVDRGV----RAVLV----ANRTYERAVELARDLGG-------EAVRFDELVDHLARSD 229 (404)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCC----SEEEE----ECSSHHHHHHHHHHHTC-------EECCGGGHHHHHHTCS
T ss_pred cCCEEEEECh-HHHHHHHHHHHHHCCC----CEEEE----EeCCHHHHHHHHHHcCC-------ceecHHhHHHHhcCCC
Confidence 4579999995 9999999999987664 13544 56776666555554421 1100123456678999
Q ss_pred EEEEeCCc
Q 015501 175 WALLIGAK 182 (405)
Q Consensus 175 iVIi~~g~ 182 (405)
+||.+.+.
T Consensus 230 vVi~at~~ 237 (404)
T 1gpj_A 230 VVVSATAA 237 (404)
T ss_dssp EEEECCSS
T ss_pred EEEEccCC
Confidence 99987543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.38 Score=44.91 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGM--IANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~--VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|. ||.+++..|+..|.
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~ 53 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGA 53 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCC
Confidence 478999999866 99999999999875
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.24 Score=47.94 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch---hhhHHHHHHHhhhhcCCCcceEEEe-cC----c
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS---LQALEGVAMELEDSLFPLLREVKIG-IN----P 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~---~~~l~g~a~DL~d~~~~~~~~v~i~-~~----~ 166 (405)
+..++.|+|| |.+|..++..|+..|. ..|.+ .+++ .++++..+.++.... +. .+.+. -+ .
T Consensus 153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga----~~V~i----~nR~~~~~~~a~~la~~~~~~~-~~--~~~~~~~~~~~~l 220 (315)
T 3tnl_A 153 IGKKMTICGA-GGAATAICIQAALDGV----KEISI----FNRKDDFYANAEKTVEKINSKT-DC--KAQLFDIEDHEQL 220 (315)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTC----SEEEE----EECSSTTHHHHHHHHHHHHHHS-SC--EEEEEETTCHHHH
T ss_pred cCCEEEEECC-ChHHHHHHHHHHHCCC----CEEEE----EECCCchHHHHHHHHHHhhhhc-CC--ceEEeccchHHHH
Confidence 3579999995 9999999999998775 23554 4666 677777777665432 21 23222 12 2
Q ss_pred ccccCCCcEEEEeC
Q 015501 167 YELFEDAEWALLIG 180 (405)
Q Consensus 167 ~eal~dADiVIi~~ 180 (405)
.+.+.++|+||.+-
T Consensus 221 ~~~l~~aDiIINaT 234 (315)
T 3tnl_A 221 RKEIAESVIFTNAT 234 (315)
T ss_dssp HHHHHTCSEEEECS
T ss_pred HhhhcCCCEEEECc
Confidence 34577999999863
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=92.35 E-value=0.13 Score=50.82 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
++||+|+||+|.+|..++..|...+
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p 40 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHP 40 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCS
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCC
Confidence 4799999999999999999988754
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.22 Score=48.81 Aligned_cols=95 Identities=14% Similarity=0.209 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..+|..|...|+ .|.. +|++.+. ++... +.. .+..+.+++||+
T Consensus 148 gktvgIiG-lG~IG~~vA~~l~~~G~-----~V~~----~d~~~~~------~~~~~-------~~~-~~l~ell~~aDv 203 (343)
T 2yq5_A 148 NLTVGLIG-VGHIGSAVAEIFSAMGA-----KVIA----YDVAYNP------EFEPF-------LTY-TDFDTVLKEADI 203 (343)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSSCCG------GGTTT-------CEE-CCHHHHHHHCSE
T ss_pred CCeEEEEe-cCHHHHHHHHHHhhCCC-----EEEE----ECCChhh------hhhcc-------ccc-cCHHHHHhcCCE
Confidence 47999999 69999999999987654 2332 4554332 11111 111 256788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--chhHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTN 228 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN--P~d~~ 228 (405)
|++.. |..+. ++. ++ |.. .+... +|++++|+++- ++|.-
T Consensus 204 V~l~~--Plt~~-t~~-li--~~~-------~l~~m-k~gailIN~aRg~~vd~~ 244 (343)
T 2yq5_A 204 VSLHT--PLFPS-TEN-MI--GEK-------QLKEM-KKSAYLINCARGELVDTG 244 (343)
T ss_dssp EEECC--CCCTT-TTT-CB--CHH-------HHHHS-CTTCEEEECSCGGGBCHH
T ss_pred EEEcC--CCCHH-HHH-Hh--hHH-------HHhhC-CCCcEEEECCCChhhhHH
Confidence 99873 32221 111 11 212 23333 58899999983 44443
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.31 Score=45.40 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-----------------hhhhHHHHHHHhhhhcCCCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLR 158 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-----------------~~~~l~g~a~DL~d~~~~~~~ 158 (405)
..||.|+|+ |.+|+.++..|+..|+- .+.| +|.|. ...+++..+..+.+.. +..
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg----~i~l--vD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~- 98 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVG----TLVL--ADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN-PDI- 98 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCS----EEEE--ECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC-TTS-
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCC----eEEE--EeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC-CCC-
Confidence 469999995 99999999999998862 2444 33332 1145565555565543 221
Q ss_pred eEEEecC------cccccCCCcEEEEe
Q 015501 159 EVKIGIN------PYELFEDAEWALLI 179 (405)
Q Consensus 159 ~v~i~~~------~~eal~dADiVIi~ 179 (405)
++..... ..+.++++|+||.+
T Consensus 99 ~v~~~~~~~~~~~~~~~~~~~DvVi~~ 125 (251)
T 1zud_1 99 QLTALQQRLTGEALKDAVARADVVLDC 125 (251)
T ss_dssp EEEEECSCCCHHHHHHHHHHCSEEEEC
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEEC
Confidence 3333221 22456789999976
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 405 | ||||
| d7mdha1 | 175 | c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( | 2e-68 | |
| d7mdha2 | 188 | d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu | 2e-47 | |
| d1y7ta1 | 154 | c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th | 2e-43 | |
| d5mdha1 | 154 | c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s | 7e-42 | |
| d5mdha2 | 179 | d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S | 1e-37 | |
| d1y7ta2 | 173 | d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu | 6e-34 | |
| d1b8pa2 | 171 | d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp | 4e-25 | |
| d1ldma2 | 169 | d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi | 3e-22 | |
| d2cmda1 | 145 | c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi | 7e-22 | |
| d1mlda2 | 169 | d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S | 2e-21 | |
| d2cmda2 | 167 | d.162.1.1 (A:146-312) Malate dehydrogenase {Escher | 3e-21 | |
| d2ldxa2 | 172 | d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse | 2e-20 | |
| d1llda2 | 170 | d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid | 2e-19 | |
| d1guza2 | 163 | d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro | 4e-19 | |
| d1i0za2 | 172 | d.162.1.1 (A:161-332) Lactate dehydrogenase {Human | 6e-19 | |
| d1mlda1 | 144 | c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s | 4e-18 | |
| d1hyea1 | 145 | c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge | 2e-17 | |
| d1hyea2 | 168 | d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd | 9e-17 | |
| d1uxja2 | 164 | d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro | 1e-16 | |
| d1a5za2 | 172 | d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm | 2e-16 | |
| d1ez4a2 | 171 | d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto | 2e-16 | |
| d1ldna2 | 168 | d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil | 3e-16 | |
| d1guza1 | 142 | c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium | 3e-16 | |
| d1t2da2 | 165 | d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar | 3e-16 | |
| d1y6ja2 | 169 | d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost | 4e-16 | |
| d1o6za1 | 142 | c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon | 2e-15 | |
| d1hyha2 | 163 | d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy | 3e-15 | |
| d1pzga2 | 174 | d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop | 3e-15 | |
| d1llca2 | 172 | d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto | 8e-15 | |
| d1o6za2 | 161 | d.162.1.1 (A:163-330) Malate dehydrogenase {Archae | 2e-13 | |
| d1ojua1 | 142 | c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon | 4e-11 | |
| d1hyha1 | 146 | c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro | 5e-11 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 1e-10 | |
| d1llda1 | 143 | c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac | 2e-10 | |
| d1ldna1 | 148 | c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus | 2e-10 | |
| d1i0za1 | 160 | c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho | 2e-09 | |
| d2ldxa1 | 159 | c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu | 5e-08 | |
| d1ez4a1 | 146 | c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac | 6e-08 | |
| d1uxja1 | 142 | c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex | 9e-08 | |
| d1y6ja1 | 142 | c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi | 5e-06 | |
| d1pzga1 | 154 | c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas | 2e-04 | |
| d1u8xx1 | 167 | c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase | 9e-04 | |
| d1up7a1 | 162 | c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther | 0.004 |
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 212 bits (541), Expect = 2e-68
Identities = 154/175 (88%), Positives = 167/175 (95%)
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G DQPIALKL
Sbjct: 1 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKL 60
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRGPGMERA
Sbjct: 61 LGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAA 120
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFHAL
Sbjct: 121 LLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 158 bits (401), Expect = 2e-47
Identities = 133/157 (84%), Positives = 143/157 (91%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
TRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK KWL
Sbjct: 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
EE FT T+QKRGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT GNPYG
Sbjct: 61 EEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYG 120
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
IAEDIVFSMPCRSKGDGDYEL DV DD+L +RI K
Sbjct: 121 IAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKK 157
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 146 bits (370), Expect = 2e-43
Identities = 87/153 (56%), Positives = 113/153 (73%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHA 246
++VKV+VVGNP NTNALI KNAP + +NF A
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTA 154
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 142 bits (359), Expect = 7e-42
Identities = 73/151 (48%), Positives = 94/151 (62%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
KVIVVGNP NTN L K+APSIP +NF L
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCL 154
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 132 bits (333), Expect = 1e-37
Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 5/161 (3%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV----KEIIKD 303
TRLD NRAK Q+ALK GV D V N+ IWGNHS+TQ PD +A++ E +KD
Sbjct: 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60
Query: 304 HKWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 363
WL+ F T+Q+RG +IK SSA S A +I D ++ + TPEG++ S G+ ++G
Sbjct: 61 DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120
Query: 364 NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
N YG+ +D+++S P D +++V+ + +D+ R+++
Sbjct: 121 NSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREKMDL 160
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 122 bits (307), Expect = 6e-34
Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 3/158 (1%)
Query: 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306
+TRLD NRAK QLA K G D++ MT+WGNHS+T PD +A ++G P E++ W
Sbjct: 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME-W 59
Query: 307 LEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 366
E+ F T+ +RG +I+ G SSAAS A + ++ ++ TPEGDW S V + G Y
Sbjct: 60 YEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQG-EY 118
Query: 367 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
GI E IV+S P +K DG Y +V+ + +++ RKR+
Sbjct: 119 GIPEGIVYSFPVTAK-DGAYRVVEGLEINEFARKRMEI 155
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Score = 98.4 bits (244), Expect = 4e-25
Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Query: 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE 308
RLD NRA Q+A K G + + +WGNHS T D+ A+I+G VK++I D W
Sbjct: 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNR 61
Query: 309 EGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGI 368
+ F T+ KRG +I G SSAAS A + +D + V T YGI
Sbjct: 62 DTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSD--GSYGI 119
Query: 369 AEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
E ++F P + +G+Y++V+ + D + ++RI
Sbjct: 120 PEGVIFGFPVTT-ENGEYKIVQGLSIDAFSQERINV 154
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Score = 90.7 bits (224), Expect = 3e-22
Identities = 17/157 (10%), Positives = 42/157 (26%), Gaps = 4/157 (2%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + + + GV + G H + + + + + + +K
Sbjct: 3 CNLDSARFRYLMGERLGVHSCSCHGW-VIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDK 61
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
++ + + V + YG
Sbjct: 62 QDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAE-TIMKNLCRVHPVSTMVKD-FYG 119
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
I +++ S+PC G + + +++ K
Sbjct: 120 IKDNVFLSLPCVLNDHG-ISNIVKMKLKPNEEQQLQK 155
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 88.9 bits (220), Expect = 7e-22
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 16/156 (10%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GAAG I L L G + L L GVA++L +
Sbjct: 3 VAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIA---PVTPGVAVDLSHIPTAVKI 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
+ G + E A+ L+ R PGM+R+ L ++N I + + A +
Sbjct: 56 KGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQV-AKTCPKACI 114
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254
++ NP NT I A+ D+N+
Sbjct: 115 GIITNPVNTTVAIA--------AEVLKKAGVYDKNK 142
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 88.2 bits (218), Expect = 2e-21
Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 8/157 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD RA +A G+ +VS I G+ T +P ++ +
Sbjct: 2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLST---- 57
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
T IQ+ G ++K + +A+ +++ A +
Sbjct: 58 ---LTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 114
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
+ FS P G + + + K IA+
Sbjct: 115 T-DCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAE 150
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 87.5 bits (216), Expect = 3e-21
Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 9/157 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R+ +A G +V I G+ T +P +E+
Sbjct: 2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVAD----- 56
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
T+ IQ G +++ +A+ ++ A L G
Sbjct: 57 ---LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDG 113
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
FS P +G E + + +
Sbjct: 114 Q-YARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEG 149
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.7 bits (211), Expect = 2e-20
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 5/159 (3%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HK 305
LD R + + K GV + G H + VP + + G+ +K +
Sbjct: 3 CNLDSARFRYLIGEKLGVNPTSCHGW-VLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTD 61
Query: 306 WLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP 365
++ + ++ + S A+ + + G
Sbjct: 62 KNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKG-F 120
Query: 366 YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
+GI E++ S+PC G V + K
Sbjct: 121 HGIKEEVFLSIPCVLGESG-ITDFVKVNMTAEEEGLLKK 158
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 82.6 bits (203), Expect = 2e-19
Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 11/162 (6%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-- 305
T LD R + +A + GV V I G H ++VP + +A I G+P+ +
Sbjct: 1 TNLDSARLRFLIAQQTGVNVKNVHAY-IAGEHGDSEVPLWESATIGGVPMSDWTPLPGHD 59
Query: 306 ---WLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 362
+ K I ++ + +S VD +++++ V +
Sbjct: 60 PLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLH----DTNRILPVSSM 115
Query: 363 GNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
+ DI S+P G + D + +
Sbjct: 116 LKDFHGISDICMSVPTLLNRQG-VNNTINTPVSDKELAALKR 156
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 81.7 bits (201), Expect = 4e-19
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 7/155 (4%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A++ GV ++ + G H VP + G+P+ +++ +
Sbjct: 4 LDAARFRSFIAMELGVSMQDINAC-VLGGHGDAMVPVVKYTTVAGIPISDLLPAETI--D 60
Query: 310 GFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 369
E + G +++ + S A A + V G YGI
Sbjct: 61 KLVERTRNGGAEIVEHLKQGS-AFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQ-YGI- 117
Query: 370 EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
+ +P + +G ++ ++ D + K
Sbjct: 118 DKTFVGVPVKLGRNGVEQIY-EINLDQADLDLLQK 151
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 81.4 bits (200), Expect = 6e-19
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 5/159 (3%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + +A K G+ I G H + V + + G+ ++E+ +
Sbjct: 3 CNLDSARFRYLMAEKLGIHPSSCHGW-ILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTD 61
Query: 308 E--EGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP 365
E + E + + + A+ + A G
Sbjct: 62 NDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG-M 120
Query: 366 YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
YGI ++ S+PC G V + D ++ K
Sbjct: 121 YGIENEVFLSLPCILNARG-LTSVINQKLKDDEVAQLKK 158
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 78.5 bits (193), Expect = 4e-18
Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 19/157 (12%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA+G I L L ++ L L + GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYD----IAHTPGVAADLSHIETRATV 53
Query: 159 EVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+ +G + + + ++ PR PGM R L + N I A A A +
Sbjct: 54 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCPDAM 112
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254
+ ++ NP N+ I A+ F + N+
Sbjct: 113 ICIISNPVNSTIPIT--------AEVFKKHGVYNPNK 141
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 76.7 bits (188), Expect = 2e-17
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ + GA+G + + LA + L L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKD-----LVLIGREHSINKLEGLREDIYDALAGTRS 57
Query: 159 EVKI---GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
+ I + ++++ ++ PR GM R L N +I + K + + +
Sbjct: 58 DANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--D 115
Query: 216 VKVIVVGNPCNTNALICLK 234
K+ V+ NP + L
Sbjct: 116 TKIFVITNPVDVMTYKALV 134
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 75.3 bits (184), Expect = 9e-17
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 6/157 (3%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R K +A GV D+V I G H + VP I G+P+++ + +
Sbjct: 3 THLDSLRFKVAIAKFFGVHIDEVRTR-IIGEHGDSMVPLLSATSIGGIPIQKFERFKELP 61
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
+ E ++ +G +I+ G S A + E + Y +G G
Sbjct: 62 IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRC---IVNNEKRLLTLSAYVDGEFDG 118
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
I D+ +P + DG E V + D K
Sbjct: 119 I-RDVCIGVPVKIGRDG-IEEVVSIELDKDEIIAFRK 153
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 74.8 bits (183), Expect = 1e-16
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 9/156 (5%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A++AGV V M + G H VP + I+G+PV E I + +
Sbjct: 4 LDAARYRTFIAMEAGVSVKDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQ- 61
Query: 310 GFTETIQKRGGLLIK-KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGI 368
E +K GG ++ S+ + A + +++++ + Y G YG+
Sbjct: 62 -IVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVL--KDKKRVMPVAAYLTGQ-YGL 117
Query: 369 AEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
DI F +P G + + ++ ++ +
Sbjct: 118 -NDIYFGVPVILGAGGVEK-ILELPLNEEEMALLNA 151
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 74.5 bits (182), Expect = 2e-16
Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 9/160 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + +A G V + G H ++VP + A I G+P++ + + +
Sbjct: 2 TVLDTARLRTLIAQHCGFSPRSVHVY-VIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKC 60
Query: 308 EEGFTETI---QKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 364
+ E KR I + ++ + A+++ D ++S+ E + VY
Sbjct: 61 DSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIF--FDEKRVLTLSVYLED- 117
Query: 365 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
Y +D+ S+P G E + ++ ++ + K
Sbjct: 118 -YLGVKDLCISVPVTLGKHG-VERILELNLNEEELEAFRK 155
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 74.1 bits (181), Expect = 2e-16
Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 4/157 (2%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD +R + L + V V I G H ++ + A I PV+++ K+
Sbjct: 1 TSLDSSRLRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVS 59
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
++ + A + S E G Y +G YG
Sbjct: 60 DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDG-QYG 118
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
+ DI P G G + + + K++
Sbjct: 119 L-NDIYIGTPAIIGGTG-LKQIIESPLSADELKKMQD 153
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 74.1 bits (181), Expect = 3e-16
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 3/157 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + L V V I G H T++P + A I +P++++++
Sbjct: 1 TILDTARFRFLLGEYFSVAPQNVHAY-IIGEHGDTELPVWSQAYIGVMPIRKLVESKGEE 59
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
+ E I + +T I + + + V +
Sbjct: 60 AQKDLERIFVNVRDAAYQI-IEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLY 118
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
D+ +P +G V ++ +D + R
Sbjct: 119 GERDVYIGVPAVINRNG-IREVIEIELNDDEKNRFHH 154
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 72.8 bits (178), Expect = 3e-16
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I V GA G + F+LA + +A +L+ + +G A+++ +S L
Sbjct: 3 ITVIGA-GNVGATTAFRLAE-------KQLARELVLLDVVEGIPQGKALDMYESGPVGLF 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+ K+ G N Y +++ ++ PR PGM R LL N I E + S+N
Sbjct: 55 DTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNI-MKHSKNPI 113
Query: 218 VIVVGNPCNTNALICLKNA 236
+IVV NP + + +
Sbjct: 114 IIVVSNPLDIMTHVAWVRS 132
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 73.3 bits (179), Expect = 3e-16
Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 4/155 (2%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD +R K ++ K V V+ I G H V + G+P++E I + +
Sbjct: 3 LDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61
Query: 310 GFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 369
+ ++ ++ A + + G
Sbjct: 62 ELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEG--QYGH 119
Query: 370 EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
DI P +G +++ ++ + + + +
Sbjct: 120 SDIFGGTPVVLGANGVEQVI-ELQLNSEEKAKFDE 153
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 73.3 bits (179), Expect = 4e-16
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 10/161 (6%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-- 305
T LD R + L+ K GV V I G H +Q+P + I G + E I D K
Sbjct: 1 TVLDSIRFRYLLSEKLGVDVKNVHGY-IIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCN 59
Query: 306 --WLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 363
++ K G I K ++ AVSI +++ + + G NG
Sbjct: 60 FTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVET--LLKNQNTIRTVGTVING 117
Query: 364 NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
YGI ED+ S+P +G + V + +
Sbjct: 118 M-YGI-EDVAISLPSIVNSEG-VQEVLQFNLTPEEEEALRF 155
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 70.8 bits (173), Expect = 2e-15
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 7/136 (5%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
++V GAAG + + +A ++ + + G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGI-AYDS 56
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
++ YE ++ ++ PR PG R L N I + +L+ +
Sbjct: 57 NTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYIS 115
Query: 219 IVVGNPCNTNALICLK 234
+ NP + +
Sbjct: 116 LTTSNPVDLLNRHLYE 131
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 71.0 bits (173), Expect = 3e-15
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 11/157 (7%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + + + VS G H +Q + R+ G P+ +
Sbjct: 2 TLLDTARMQRAVGEAFDLDPRSVSGY-NLGEHGNSQFVAWSTVRVMGQPIVTLADAGDID 60
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
E +K GG + ++ A S + K+ + +
Sbjct: 61 LAAIEEEARK-GGFTVLNGKGYTSYGVATSAIRIAKA--------VMADAHAELVVSNRR 111
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
+ S P DG + ++++ +
Sbjct: 112 DDMGMYLSYPAIIGRDG-VLAETTLDLTTDEQEKLLQ 147
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 71.1 bits (173), Expect = 3e-15
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A V V + G H VP +NG P+++ IKD E+
Sbjct: 4 LDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62
Query: 310 GFTETIQK---RGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 366
E + GG +++ G+ SA + AM + + S Y
Sbjct: 63 QLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCN--GEY 120
Query: 367 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
G+ +D+ +P G G E V ++ ++ +K+ K
Sbjct: 121 GL-KDMFIGLPAVIGGAG-IERVIELELNEEEKKQFQK 156
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 69.9 bits (170), Expect = 8e-15
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 9/160 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + +A V V I G H T+ P + +A I G+ + E +K H +
Sbjct: 1 TSLDTARFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEI 59
Query: 308 EEGFTETIQKRG---GLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 364
+E + + I K ++ A ++ K+++ E VY +G
Sbjct: 60 KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAIL--NDENAVLPLSVYMDG- 116
Query: 365 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
YGI D+ P +G + ++ D+ + + K
Sbjct: 117 QYGI-NDLYIGTPAVINRNGIQN-ILEIPLTDHEEESMQK 154
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 65.2 bits (158), Expect = 2e-13
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 11/157 (7%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
RLD R + L+ + V I G H QVP F ++G + + + L
Sbjct: 3 GRLDSARFRYVLSEEFDAPVQNVEGT-ILGEHGDAQVPVFSKVSVDGTDPEFSGDEKEQL 61
Query: 308 EEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYG 367
E+ + + ++ A + +++++ T E
Sbjct: 62 LGDLQESAMD-----VIERKGATEWGPARGVAHMVEAILHDTGEVLP----ASVKLEGEF 112
Query: 368 IAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404
ED F +P +G E + + DDY + +A
Sbjct: 113 GHEDTAFGVPVSLGSNG-VEEIVEWDLDDYEQDLMAD 148
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.5 bits (141), Expect = 4e-11
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 10/137 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ GA G + + F ++ + + G AM+L + + +
Sbjct: 3 LGFVGA-GRVGSTSAFTCLL-------NLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDK 54
Query: 159 EVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
K +G Y L + +E ++ R PGM R L N I + K + + K
Sbjct: 55 YPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKI-VENAPESK 113
Query: 218 VIVVGNPCNTNALICLK 234
++VV NP + I K
Sbjct: 114 ILVVTNPMDVMTYIMWK 130
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 58.2 bits (140), Expect = 5e-11
Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 13/140 (9%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I + G G + + L A Q +A + + + ++ ++ +D++ L
Sbjct: 4 IGIIGL-GNVGAAVAHGLIA-------QGVADDYVFIDANEAKVKADQIDFQDAMANLEA 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRG----PGMERAGLLDINGQIFAEQGKALNAVASR 214
I IN + DA+ + + P +R L + G +
Sbjct: 56 HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTN-LKESGF 114
Query: 215 NVKVIVVGNPCNTNALICLK 234
+ ++V+ NP + +
Sbjct: 115 HGVLVVISNPVDVITALFQH 134
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 57.0 bits (137), Expect = 1e-10
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I + G G + + F L + A +++ + + EG A++L P R
Sbjct: 3 IGIVGL-GRVGSSTAFALLM-------KGFAREMVLIDVDKKRAEGDALDLIHGT-PFTR 53
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
I Y + ++ ++ P+ PG R LL N ++ E + ++ A + V
Sbjct: 54 RANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIV 112
Query: 219 IVVGNPCNTNALICLKNA 236
IVV NP + LK +
Sbjct: 113 IVVTNPVDVLTYFFLKES 130
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 56.5 bits (136), Expect = 2e-10
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA G + + L F A + IA +++ + + + +E ++++
Sbjct: 4 LAVIGA-GAVGSTLAFAAAQ-------RGIAREIVLEDIAKERVEAEVLDMQHGSSFYPT 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
G + E+ DA+ ++ + PG R L+ I L VA N
Sbjct: 56 VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP-NAIY 114
Query: 219 IVVGNPCNTNALICLK 234
+++ NP + + K
Sbjct: 115 MLITNPVDIATHVAQK 130
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 56.2 bits (135), Expect = 2e-10
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 9/136 (6%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ V GA G + +F L Q IA +++ + + G AM+ +
Sbjct: 9 VVVIGA-GFVGASYVFALMN-------QGIADEIVLIDANESKAIGDAMDFNHGKVFAPK 60
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V I Y+ DA+ ++ + PG R L+D N IF +++ +
Sbjct: 61 PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESV-MASGFQGLF 119
Query: 219 IVVGNPCNTNALICLK 234
+V NP + K
Sbjct: 120 LVATNPVDILTYATWK 135
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 54.3 bits (130), Expect = 2e-09
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 12/148 (8%)
Query: 87 EEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146
EE T K I V G G + + + +A +L + L+G
Sbjct: 14 EEATVPNNK---ITVVGV-GQVGMACAISILG-------KSLADELALVDVLEDKLKGEM 62
Query: 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGK 206
M+L+ L + Y + +++ ++ + G R L+ N +F
Sbjct: 63 MDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIP 122
Query: 207 ALNAVASRNVKVIVVGNPCNTNALICLK 234
+ S + +IVV NP + + K
Sbjct: 123 QI-VKYSPDCIIIVVSNPVDILTYVTWK 149
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.6 bits (118), Expect = 5e-08
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 12/149 (8%)
Query: 86 AEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145
E+ S K I V G G + + G +AL + L G
Sbjct: 12 VPEDKLSRCK---ITVVGV-GDVGMACAISILLK---GLADELALV----DADTDKLRGE 60
Query: 146 AMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
A++L+ L + Y + +++ ++ G R LL N I
Sbjct: 61 ALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIV 120
Query: 206 KALNAVASRNVKVIVVGNPCNTNALICLK 234
+ S + K+IVV NP + + K
Sbjct: 121 PGV-IQNSPDCKIIVVTNPVDILTYVVWK 148
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 49.3 bits (117), Expect = 6e-08
Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151
S + + G G + + F +A Q IA + + + +G A++LED
Sbjct: 1 SMPNHQKVVLVGD-GAVGSSYAFAMAQ-------QGIAEEFVIVDVVKDRTKGDALDLED 52
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ KI Y +DA+ ++ P+ PG R L++ N I + K +
Sbjct: 53 AQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS 111
Query: 212 ASRNVKVIVVGNPCNTNALICLK 234
+ +V NP + K
Sbjct: 112 GF-DGIFLVAANPVDILTYATWK 133
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 48.9 bits (116), Expect = 9e-08
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I++ GA G + + LAA + + ++ + +G A++L ++
Sbjct: 4 ISIIGA-GFVGSTTAHWLAA-------KELG-DIVLLDIVEGVPQGKALDLYEASPIEGF 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+V++ G N Y +++ ++ PR PGM R L+ +N I A S N
Sbjct: 55 DVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQA-APLSPNAV 113
Query: 218 VIVVGNPCNTNALICLK 234
+I+V NP + + +
Sbjct: 114 IIMVNNPLDAMTYLAAE 130
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 43.8 bits (103), Expect = 5e-06
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+A+ GA G + F +A + A +L+ + + G AM++ L P +
Sbjct: 4 VAIIGA-GFVGASAAFTMAL-------RQTANELVLIDVFKEKAIGEAMDINHGL-PFMG 54
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
++ + Y +D + ++ R PG R L N I E + + +
Sbjct: 55 QMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQN-IMKYYNHGVI 113
Query: 219 IVVGNPCNTNALICLK 234
+VV NP + + K
Sbjct: 114 LVVSNPVDIITYMIQK 129
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
++ +A+ G+ GMI + + A E+ + L + + + + + S+
Sbjct: 5 QRRKKVAMIGS-GMIGGTMGYLCALREL------ADVVLYDVVKGMPEGKALDLSHVTSV 57
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKAL 208
V+ + A+ ++ + PG R LL N +I E G+ +
Sbjct: 58 VDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 117
Query: 209 NAVASRNVKVIVVGNPCNTNALICLK 234
+IVV NP + + +
Sbjct: 118 KKY-CPKTFIIVVTNPLDCMVKVMCE 142
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Score = 37.7 bits (87), Expect = 9e-04
Identities = 20/167 (11%), Positives = 47/167 (28%), Gaps = 25/167 (14%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
KK +I ++G ++ L P + + L ER + +A + +
Sbjct: 1 KKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKER----QDRIAGACDVFI 56
Query: 154 --FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
E +P E F D ++ + + + + + ++ +
Sbjct: 57 REKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGI 116
Query: 212 ASR-------------------NVKVIVVGNPCNTNALICLKNAPSI 239
A + ++ NP A + P+
Sbjct: 117 AYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 163
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Score = 35.8 bits (82), Expect = 0.004
Identities = 20/159 (12%), Positives = 39/159 (24%), Gaps = 23/159 (14%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
IAV G L+ L + + E+ + + ++ L
Sbjct: 3 IAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEK-----QKIVVDFVKRLVKDRF 57
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN----GQIFAEQGKALNAVASR 214
+V I DA++ + G E + + GQ G A+ +
Sbjct: 58 KVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAF 117
Query: 215 NV--------------KVIVVGNPCNTNALICLKNAPSI 239
+ ++ NP
Sbjct: 118 PIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYE 156
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 405 | |||
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d7mdha2 | 188 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d5mdha2 | 179 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 100.0 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1i0za2 | 172 | Lactate dehydrogenase {Human (Homo sapiens), heart | 99.98 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.98 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 99.98 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.97 | |
| d1llda2 | 170 | Lactate dehydrogenase {Bifidobacterium longum, str | 99.97 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.97 | |
| d1y7ta2 | 173 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 99.97 | |
| d1hyea2 | 168 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.97 | |
| d1b8pa2 | 171 | Malate dehydrogenase {Aquaspirillum arcticum [TaxI | 99.97 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 99.97 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.97 | |
| d1y6ja2 | 169 | Lactate dehydrogenase {Clostridium thermocellum [T | 99.97 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 99.97 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 99.97 | |
| d1ldma2 | 169 | Lactate dehydrogenase {Dogfish (Squalus acanthias) | 99.97 | |
| d1a5za2 | 172 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.97 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.97 | |
| d1ojua2 | 152 | Lactate dehydrogenase {Archaeon Archaeoglobus fulg | 99.97 | |
| d2ldxa2 | 172 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1hyha2 | 163 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.97 | |
| d1guza2 | 163 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.97 | |
| d1pzga2 | 174 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.97 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.97 | |
| d1t2da2 | 165 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.97 | |
| d1ez4a2 | 171 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.97 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.97 | |
| d1uxja2 | 164 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.97 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.96 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.96 | |
| d1ldna2 | 168 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.96 | |
| d1llca2 | 172 | Lactate dehydrogenase {Lactobacillus casei [TaxId: | 99.96 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.96 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.96 | |
| d1o6za2 | 161 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.95 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.95 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.95 | |
| d1mlda2 | 169 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.92 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 99.89 | |
| d2cmda2 | 167 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.89 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 99.89 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.88 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 99.87 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.38 | |
| d1up7a2 | 253 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.04 | |
| d1s6ya2 | 270 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 98.9 | |
| d1u8xx2 | 276 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.77 | |
| d1obba2 | 308 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.66 | |
| d1vjta2 | 278 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.56 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.55 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.38 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.33 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.22 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.08 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.99 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.93 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.86 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.8 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.77 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.66 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.57 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.48 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.42 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.34 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.29 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 97.26 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.1 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 96.97 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.97 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 96.97 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.95 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.89 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.87 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 96.79 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.73 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.7 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.6 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 96.55 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.5 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.44 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 96.42 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.4 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.34 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 96.26 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 96.18 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 96.17 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 96.1 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.09 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 96.06 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.05 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.01 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.01 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.97 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 95.94 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.74 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.71 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 95.64 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.62 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 95.56 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.49 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.46 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.41 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 95.37 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.35 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.35 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.31 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.28 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.28 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.21 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.15 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.05 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.99 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 94.92 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 94.91 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.88 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.82 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 94.8 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.69 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.68 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 94.66 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 94.65 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 94.65 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 94.46 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.43 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.38 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 94.35 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 94.34 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.31 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.29 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.24 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 94.22 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.22 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.15 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.11 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.07 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 94.05 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 94.02 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.0 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 93.95 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 93.92 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 93.88 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.85 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 93.83 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.82 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 93.81 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 93.68 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 93.67 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 93.61 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 93.56 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 93.54 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.48 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 93.48 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 93.36 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 93.24 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 93.22 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 93.2 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.96 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 92.94 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.88 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 92.79 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 92.75 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 92.67 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.62 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 92.55 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 92.51 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 92.47 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 92.43 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 92.25 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 92.24 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 92.23 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 92.2 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.11 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 91.97 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 91.96 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.93 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 91.68 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.65 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.54 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 91.42 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.37 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 91.26 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 91.11 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 90.82 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 90.76 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.71 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.63 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 90.6 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 90.51 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 90.48 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 90.4 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 90.36 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 90.34 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 90.16 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 90.06 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 90.02 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 89.84 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 89.79 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 89.7 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 89.64 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 89.62 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 89.61 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 89.41 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 89.26 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.25 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 89.18 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 89.1 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 89.0 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 88.91 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 88.87 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 88.83 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 88.69 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 88.64 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.39 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.18 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.13 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 88.11 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 88.07 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 87.75 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 87.44 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 87.14 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.86 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 86.64 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 86.51 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 86.2 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 86.14 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 86.03 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.9 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.72 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 85.59 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 85.08 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 85.0 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.69 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 84.49 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 84.43 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 84.36 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 83.05 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 82.81 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 82.52 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 82.33 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 81.93 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 81.33 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 81.32 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 81.06 |
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=7.4e-41 Score=301.09 Aligned_cols=173 Identities=88% Similarity=1.395 Sum_probs=153.8
Q ss_pred CcceeeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh
Q 015501 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (405)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~ 152 (405)
+|||+||.+|+++.|+++++++++.||+|+||+|+||+++++.|+++++++.++++.|+|+|++.+.+.++|++||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~ 80 (175)
T d7mdha1 1 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS 80 (175)
T ss_dssp CCCGGGCC------------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT
T ss_pred CceEeeecccccccchhhhccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHH
Q 015501 153 LFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (405)
Q Consensus 153 ~~~~~~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~ 232 (405)
+++....+.+++++|++++|||+||+++|.||+|||+|.|++.+|.+|++++++.|++||+++++|+++|||+|++|+++
T Consensus 81 a~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia 160 (175)
T d7mdha1 81 LYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC 160 (175)
T ss_dssp TCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH
T ss_pred ccccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH
Confidence 98887888899999999999999999999999999999999999999999999999999855899999999999999999
Q ss_pred HHHCCCCCCCcee
Q 015501 233 LKNAPSIPAKNFH 245 (405)
Q Consensus 233 ~k~s~~~~~k~ig 245 (405)
+++++++|+++|.
T Consensus 161 ~k~a~~ip~~~i~ 173 (175)
T d7mdha1 161 LKNAPDIPAKNFH 173 (175)
T ss_dssp HHTCTTSCGGGEE
T ss_pred HHHCCCCCHHHEe
Confidence 9998899986654
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=4.2e-38 Score=286.12 Aligned_cols=157 Identities=85% Similarity=1.328 Sum_probs=149.7
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcC
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWG 327 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G 327 (405)
|+||++||+++||+++||++++|++++||||||++|||+||+++|+|+|+.+++.+..|..+++.+.++++++++++.+|
T Consensus 1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~kg 80 (188)
T d7mdha2 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWG 80 (188)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhhc
Confidence 78999999999999999999999987899999999999999999999999999988888889999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 328 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 328 ~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+++++++|.++++++++|+.++++..++|++|+++|++||+++|+|||+||++|++|+++++++++|+++|+++|++
T Consensus 81 ~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~~ 157 (188)
T d7mdha2 81 RSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKK 157 (188)
T ss_dssp SCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999998878889999999999966999999999999999999999998889999999999985
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1e-33 Score=255.12 Aligned_cols=156 Identities=38% Similarity=0.626 Sum_probs=140.7
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhh----ccccHHHHHHHHHhhhHHHH
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKRGGLLI 323 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~----~~~~~~el~~~v~~~~~~ii 323 (405)
|+||++|||++||+++||+|++|++++||||||+++||+||+++|+|+|+.+++.+ ..+..+++.+.++++++.++
T Consensus 1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 80 (179)
T d5mdha2 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVI 80 (179)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhhh
Confidence 78999999999999999999999987788999999999999999999997665433 23556788899999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 324 ~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
+.+|++++.++|.++++++.+|+...++..+++++|+++|.+||+|+|+|||+||++|++|++++. +++|+++|+++|+
T Consensus 81 ~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~-~l~L~~~E~~~l~ 159 (179)
T d5mdha2 81 KARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVE-GLPINDFSREKMD 159 (179)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECC-CCCCCHHHHHHHH
T ss_pred hccCcchHHHHHHHHHHHHHHHHhhcccCCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEe-CCCCCHHHHHHHH
Confidence 988888877899999999999997778889999999999878999999999999999999999988 5999999999998
Q ss_pred h
Q 015501 404 K 404 (405)
Q Consensus 404 ~ 404 (405)
+
T Consensus 160 ~ 160 (179)
T d5mdha2 160 L 160 (179)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.4e-33 Score=245.83 Aligned_cols=152 Identities=57% Similarity=0.903 Sum_probs=143.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
|++|+||+||||+|+||+++++.|++++++++++++.+++++.+.+.+++++.++|++++.++....+.++.++|++++|
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 57899999999889999999999999999999889999999999999999999999999987777788999999999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCce
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~i 244 (405)
||+||+++|.||+||++|.+++.+|+++++++++.|.++|+|+++|+++|||+|++|++++|+++++|+++|
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~rv 152 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNF 152 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGE
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHHhc
Confidence 999999999999999999999999999999999999999866899999999999999999998778998655
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=6.7e-33 Score=243.94 Aligned_cols=150 Identities=48% Similarity=0.727 Sum_probs=139.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+|+||+||||+|+||+++++.|+++++++.++++.|+|+|++.+.+++++..+|+.|+.++....+.++.++|++++|||
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 68999999988999999999999999999888899999999999999999999999988777777888899999999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCce
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~i 244 (405)
+||+++|.|++||++|.+++.+|.++++++++.|.++|++++++|++|||+|++|++++|+++++|+++|
T Consensus 82 vVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v 151 (154)
T d5mdha1 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENF 151 (154)
T ss_dssp EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGE
T ss_pred EEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHE
Confidence 9999999999999999999999999999999999999855678999999999999999999988998554
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=99.98 E-value=2.2e-32 Score=244.12 Aligned_cols=153 Identities=19% Similarity=0.277 Sum_probs=136.8
Q ss_pred ecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc-----ccHHHHHHHHHhhhH
Q 015501 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKRGG 320 (405)
Q Consensus 246 ~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~-----~~~~el~~~v~~~~~ 320 (405)
+||.||++||+++||+++|+++++|+ ++||||||++|||+||+++|+|.|+.+++.+.. +..+++.+.+++++.
T Consensus 1 ~GT~LDs~R~~~~lA~~lgv~~~~V~-~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (172)
T d1i0za2 1 SGCNLDSARFRYLMAEKLGIHPSSCH-GWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 79 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCB-CCEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCcCHHHce-EEEEccCCCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceE
Confidence 58999999999999999999999997 589999999999999999999999998876533 234678888999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHH
Q 015501 321 LLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 400 (405)
Q Consensus 321 ~ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~ 400 (405)
++++.+|.+.++ +|.++++++..++ .+++.++|++++++| +||++++++||+||++|++|+++++ +++|+++|++
T Consensus 80 ~~~~~~~~s~~a-~a~~~~~~~~~~~--~~~~~v~~~~~~~~g-~YGi~~~i~~s~Pv~lg~~Gv~~v~-~l~L~~~E~~ 154 (172)
T d1i0za2 80 EVIKLKGYTNWA-IGLSVADLIESML--KNLSRIHPVSTMVKG-MYGIENEVFLSLPCILNARGLTSVI-NQKLKDDEVA 154 (172)
T ss_dssp HHHHHHSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSCCEEEEEEEEETTEEEEEC-CCCCCHHHHH
T ss_pred EeeecccccchH-HHHHHHHHHHHHh--cCCCcccccceeccC-cCCCcCCEEEEEEEEecCCcEEEEe-CCCCCHHHHH
Confidence 999999988774 6777777777777 678999999999999 7999999999999999999999988 4999999999
Q ss_pred HHhh
Q 015501 401 RIAK 404 (405)
Q Consensus 401 ~l~~ 404 (405)
+|++
T Consensus 155 ~l~~ 158 (172)
T d1i0za2 155 QLKK 158 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9975
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.98 E-value=2.1e-32 Score=237.53 Aligned_cols=141 Identities=15% Similarity=0.226 Sum_probs=126.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.||+||||+|+||+++|+.|+.++++++ |.|+|++.+++.++|+++||.|+. ++....++++++|++++|||+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~e-----l~L~Di~~~~~~~~g~a~Dl~~~~-~~~~~~~i~~~~~~~~~~aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADE-----VVFVDIPDKEDDTVGQAADTNHGI-AYDSNTRVRQGGYEDTAGSDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSE-----EEEECCGGGHHHHHHHHHHHHHHH-TTTCCCEEEECCGGGGTTCSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCE-----EEEEecCCcccccceeecchhhcc-cccCCceEeeCCHHHhhhcCEE
Confidence 3999999779999999999999999763 445666667788999999999977 5555666777899999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Ccee
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig 245 (405)
|+++|.||+|||+|.+++..|++|++++++.|.+++ |+++++++|||+|+||++++|.++ +|+ |+||
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPvDvmt~~~~k~sg-~~~~rViG 142 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLNRHLYEAGD-RSREQVIG 142 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHHHHHHHHSS-SCGGGEEE
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChHHHHHHHHHHHHC-cCcccccC
Confidence 999999999999999999999999999999999997 999999999999999999999985 665 7776
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=99.98 E-value=4.1e-32 Score=236.01 Aligned_cols=141 Identities=21% Similarity=0.298 Sum_probs=125.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcc-eEEEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR-EVKIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~-~v~i~~~~~eal~dAD 174 (405)
|.||+|||| |+||+++|+.|+..+++++ +.| +|.++++++|+++||+|+. ++.. .....+++|++++|||
T Consensus 1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~E---lvL----~D~~~~~~~g~a~Dl~~a~-~~~~~~~i~~~~~~~~~~daD 71 (143)
T d1llda1 1 PTKLAVIGA-GAVGSTLAFAAAQRGIARE---IVL----EDIAKERVEAEVLDMQHGS-SFYPTVSIDGSDDPEICRDAD 71 (143)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE----ECSSHHHHHHHHHHHHHTG-GGSTTCEEEEESCGGGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcE---EEE----EEeccccchhHHHHHHhcc-ccCCCceeecCCCHHHhhCCc
Confidence 579999995 9999999999999999864 665 6777789999999999986 3332 2333567899999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeec
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~g 247 (405)
+||+++|.|++||++|.+++..|++|++++++.|.+++ |++++|++|||+|+||+++++.++ +|+ |+||+|
T Consensus 72 vVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvDvmt~~~~~~sg-~p~~rViG~G 143 (143)
T d1llda1 72 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVDIATHVAQKLTG-LPENQIFGSG 143 (143)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHHT-CCTTSEEECT
T ss_pred EEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCchHHHHHHHHHHHC-CChhhccCCC
Confidence 99999999999999999999999999999999999997 999999999999999999999984 665 999986
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=4.7e-32 Score=237.04 Aligned_cols=143 Identities=21% Similarity=0.255 Sum_probs=128.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
...||+|||| |+||+++++.|+..+++++ +.| +|+++++++|+++||+|+.......+.+++++|++++|||
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~e---l~L----~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daD 76 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADE---IVL----IDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDAD 76 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE----ECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCS
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCce---EEE----EeeccccccchhccHhhCccccCCCeEEEECCHHHhccce
Confidence 4679999995 9999999999999998764 665 5677789999999999987434456777788999999999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeec
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~g 247 (405)
+||+++|.|++||++|.+++.+|+++++++++.|.++| |++++|++|||+|++|++++|+++ +|+ |+||+|
T Consensus 77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd~~t~~~~k~sg-~p~~rViG~G 148 (148)
T d1ldna1 77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKFSG-LPHERVIGSG 148 (148)
T ss_dssp EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHHT-CCGGGEEECT
T ss_pred eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccHHHHHHHHHHHC-cChhheecCC
Confidence 99999999999999999999999999999999999997 999999999999999999999985 665 999986
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=99.97 E-value=6.9e-32 Score=240.77 Aligned_cols=150 Identities=21% Similarity=0.275 Sum_probs=133.5
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhc------cccHHHHHHHHHhhhHH
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH------KWLEEGFTETIQKRGGL 321 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~------~~~~~el~~~v~~~~~~ 321 (405)
|+||++||+.+||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++... .+..+++.+.+++++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~ 79 (170)
T d1llda2 1 TNLDSARLRFLIAQQTGVNVKNVHA-YIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK 79 (170)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence 7899999999999999999999985 8999999999999999999999999876432 23457889999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHH
Q 015501 322 LIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 401 (405)
Q Consensus 322 ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~ 401 (405)
+++.+|.++++ +|.++++++.+++ .+++.+++++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++
T Consensus 80 i~~~kg~t~~~-~a~~~~~~~~~i~--~~~~~~~~~~~~~~~-~~g~-~~i~~s~P~~lg~~Gv~~i~~-l~L~~~E~~~ 153 (170)
T d1llda2 80 IINGKGATNYA-IGMSGVDIIEAVL--HDTNRILPVSSMLKD-FHGI-SDICMSVPTLLNRQGVNNTIN-TPVSDKELAA 153 (170)
T ss_dssp HHTSCCSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECSS-BTTB-CSSEEEEEEEEETTEEECCSC-CCCCHHHHHH
T ss_pred HHhhhccchhh-hHHHHHHHHHHHH--cCCCceeeeeccccC-ccCC-CCeeEeeccEEcCCeeEEEec-CCCCHHHHHH
Confidence 99999988774 6667777777777 688999999999999 7998 699999999999999999985 9999999999
Q ss_pred Hhh
Q 015501 402 IAK 404 (405)
Q Consensus 402 l~~ 404 (405)
|++
T Consensus 154 l~~ 156 (170)
T d1llda2 154 LKR 156 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=8.4e-32 Score=233.35 Aligned_cols=139 Identities=24% Similarity=0.376 Sum_probs=125.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||| |+||+++++.|+..+++++ |.| +|+++++++|+++|+.|+. ++.....+.+++|++++|||+|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L----~Di~~~~~~g~~~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 71 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFARE---MVL----IDVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV 71 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE----ECSSHHHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCE---EEE----Eecccccccchhccccccc-cccccccccCCcHHHhcCCCEE
Confidence 79999995 9999999999999998753 655 5667789999999999987 5555666778899999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceee
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~ 246 (405)
|+++|.|++||++|.+++.+|++|++++++.|.++| |+++++++|||+|+||++++|.++ +|+ |+||+
T Consensus 72 vitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPvd~~t~~~~k~sg-~p~~rViGt 140 (140)
T d1a5za1 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKESG-MDPRKVFGS 140 (140)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHHT-CCTTTEEEC
T ss_pred EEecccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcHHHHHHHHHHHHC-cCccceeCc
Confidence 999999999999999999999999999999999997 999999999999999999999984 665 88885
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=7.6e-32 Score=241.06 Aligned_cols=155 Identities=40% Similarity=0.703 Sum_probs=130.1
Q ss_pred cchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc
Q 015501 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW 326 (405)
Q Consensus 247 gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~ 326 (405)
.|.||++|||++||+++||++++|++++||||||++++|+||+++|+|.|+.++..+..+..+++.+ ..++++.++..+
T Consensus 1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 79 (173)
T d1y7ta2 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPT-VAQRGAAIIQAR 79 (173)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCHHHHHHTHHHH-HHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeEcCccHHHhcccccccchhhhh-hhhhHHHHHHHh
Confidence 4899999999999999999999999877899999999999999999999999887665444444444 444555555555
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 327 G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+.+++.+.|.+++.++++++.++|+++++|++++++| +||+|++++||+||++++ |.++++.+++|+++|+++|++
T Consensus 80 ~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~g-~YGi~~~~~~s~Pvi~~~-gg~~~v~~l~L~~~E~~~l~~ 155 (173)
T d1y7ta2 80 GASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTAKD-GAYRVVEGLEINEFARKRMEI 155 (173)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSS-GGGCCTTSEEEEEEEEET-TEEEECCCCCCCHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEecc-ccCCccceeEeeeEEEeC-CeEEEecCCCCCHHHHHHHHH
Confidence 5555567899999999998877789999999999999 899999999999998775 545666679999999999975
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=4.6e-32 Score=241.25 Aligned_cols=153 Identities=24% Similarity=0.370 Sum_probs=129.2
Q ss_pred ecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh
Q 015501 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (405)
Q Consensus 246 ~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~ 325 (405)
+||+||++||+++||+++|+++++|++ +||||||++|||+||+++++|+|+.++.....+..+++.+.++++++.++..
T Consensus 1 ~GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T d1hyea2 1 LGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRL 79 (168)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC-
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHh
Confidence 589999999999999999999999985 8999999999999999999999999887666666788888899888888888
Q ss_pred cCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 326 ~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|.++++ .|...++.+..++ .+++.++++++++.| +||.++|+|||+||++|++|++++++ ++|+++|+++|++
T Consensus 80 k~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~v~~s~Pv~lg~~Gv~~i~~-l~Ls~~E~~~l~~ 153 (168)
T d1hyea2 80 KGGSEFG-PAAAILNVVRCIV--NNEKRLLTLSAYVDG-EFDGIRDVCIGVPVKIGRDGIEEVVS-IELDKDEIIAFRK 153 (168)
T ss_dssp -----CC-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-SSSSCEEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred ccCcccc-chhhhhHHHHhhh--ccCCCeEEEEEEEec-ccCCcCCEEEeeceEEcCCcEEEEec-CCCCHHHHHHHHH
Confidence 8877663 4445556666566 678899999999998 57666899999999999999999995 9999999999985
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Probab=99.97 E-value=1e-31 Score=239.59 Aligned_cols=153 Identities=35% Similarity=0.617 Sum_probs=135.9
Q ss_pred hhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhcCC
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGR 328 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~G~ 328 (405)
+||++||+++||+++|++|++|++++||||||+++||+||+++++|.++.++..+..+..+++.+.+++++..++..+|.
T Consensus 2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (171)
T d1b8pa2 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGV 81 (171)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHHSS
T ss_pred cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999999888999999999999999999999999988777677778888888888888888888
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+++.+.+.+++..+..|+.+ +++.++|++++++| +||+|+++|||+||++|++|++.+. +++|+++|+++|++
T Consensus 82 ~~~~~~~~a~~~~~~~~i~~-~~~~~~~~s~~~~g-~yg~~~gi~fS~Pv~ig~~gve~v~-~l~L~~~e~~~l~~ 154 (171)
T d1b8pa2 82 SSAASAANAAIDHIHDWVLG-TAGKWTTMGIPSDG-SYGIPEGVIFGFPVTTENGEYKIVQ-GLSIDAFSQERINV 154 (171)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECCS-GGGCCTTCEEEEEEEEETTEEEECC-CCCCCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHhC-CCccceeEEEEecc-ccccccceEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHH
Confidence 77766666677777666653 78899999999999 8999999999999999999987776 69999999999985
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=99.97 E-value=1.1e-31 Score=233.09 Aligned_cols=140 Identities=21% Similarity=0.307 Sum_probs=117.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.||+|||| |+||+++++.|+..+++++ +.| +|+++++++|+++||+|+. ++....++++++|++++|||+|
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L----~D~~~~~~~g~a~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 72 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANE---LVL----IDVFKEKAIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCDVI 72 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSE---EEE----ECCC---CCHHHHHHTTSC-CCTTCEEEC--CGGGGTTCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeccCCccceeeeeeccCc-ccCCCeeEeeCcHHHhCCCceE
Confidence 59999996 9999999999999998764 655 5666788999999999987 5666677778899999999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeec
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~g 247 (405)
|+++|.+++||++|.+++.+|+++++++++.|.+++ |++++|++|||+|+||+++++.++ +|+ |+||+|
T Consensus 73 vitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvdv~t~~~~k~sg-~p~~rViG~G 142 (142)
T d1y6ja1 73 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKWSG-LPVGKVIGSG 142 (142)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHHHT-CCTTTEEECT
T ss_pred EEecccccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChHHHHHHHHHHHHC-CCccceecCC
Confidence 999999999999999999999999999999999997 999999999999999999999985 665 899986
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.97 E-value=1.2e-31 Score=234.00 Aligned_cols=145 Identities=19% Similarity=0.269 Sum_probs=118.1
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
+|.+.+||+|||| |+||+++++.|++.++..+ +.| +|+++++++|+++||+|+.. +.....+.+++|++++
T Consensus 1 sm~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~e---lvL----~D~~~~~~~g~a~Dl~~a~~-~~~~~~~~~~d~~~~~ 71 (146)
T d1ez4a1 1 SMPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEE---FVI----VDVVKDRTKGDALDLEDAQA-FTAPKKIYSGEYSDCK 71 (146)
T ss_dssp CBTTBCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE----ECSSHHHHHHHHHHHHGGGG-GSCCCEEEECCGGGGT
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhcCCCcE---EEE----eecccchhHHHHHHHhcccc-ccCCceEeeccHHHhc
Confidence 4566789999995 9999999999999998753 655 56777899999999999873 3334455567899999
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeec
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~g 247 (405)
|||+||+++|.|++||++|.+++.+|+++++++++.|.++| |++++|++|||+|++++++++.++ +|+ |+||+|
T Consensus 72 ~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~-p~aivivvtNPvdv~t~~~~k~sg-~p~~rViG~G 146 (146)
T d1ez4a1 72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDILTYATWKFSG-FPKERVIGSG 146 (146)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHC-CCGGGEEECT
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCcEEEEeCCccHHHHHHHHHHHC-cCccceecCC
Confidence 99999999999999999999999999999999999999997 999999999999999999999984 665 899986
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=99.97 E-value=7.7e-32 Score=240.32 Aligned_cols=150 Identities=27% Similarity=0.368 Sum_probs=129.4
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc-----ccHHHHHHHHHhhhHHH
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKRGGLL 322 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~-----~~~~el~~~v~~~~~~i 322 (405)
|+||++||+++||+++|+++++|++ +||||||++|+|+||+++|+|.|+.+++.+.. +..+++.+++++.++.+
T Consensus 1 T~LDs~R~~~~la~~lgv~~~~V~~-~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (169)
T d1y6ja2 1 TVLDSIRFRYLLSEKLGVDVKNVHG-YIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI 79 (169)
T ss_dssp THHHHHHHHHHHHTTTTCCTTTEEC-CEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHceE-EEEccCCCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence 7899999999999999999999985 89999999999999999999999998876532 34467888899899999
Q ss_pred HHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHH
Q 015501 323 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402 (405)
Q Consensus 323 i~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l 402 (405)
++.+|.+.|+ +|..+++++..++ .|++.++|++++++| +||++ |+|||+||++|++|++++++ ++|+++|+++|
T Consensus 80 ~~~~~s~~~a-~a~~~~~~~~~i~--~~~~~~~~~~~~~~g-~yg~~-~i~~s~Pv~lg~~Gv~~i~~-l~Ls~~E~~~l 153 (169)
T d1y6ja2 80 IKNKGATYYG-IAVSINTIVETLL--KNQNTIRTVGTVING-MYGIE-DVAISLPSIVNSEGVQEVLQ-FNLTPEEEEAL 153 (169)
T ss_dssp HHHTSCCCHH-HHHHHHHHHHHHH--HTCCCEECCEEEECS-BTTBC-SEEEECCEEEETTEEEECCC-CCCCHHHHHHH
T ss_pred hhhhhhhhhH-HHHHHHHHHHHhc--cCCCCceeeeeeecc-ccCCc-ccceeeeeEEcCCcEEEEec-CCCCHHHHHHH
Confidence 9999988874 5666666666665 588999999999999 79995 99999999999999999985 99999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 154 ~~ 155 (169)
T d1y6ja2 154 RF 155 (169)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=3.1e-31 Score=230.29 Aligned_cols=140 Identities=24% Similarity=0.325 Sum_probs=122.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceE-EEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-KIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v-~i~~~~~eal~dADi 175 (405)
|||+|||| |+||+++++.|+..+++++ +.| +|+++++++|+++||+|+...+.... ...+++||+++|||+
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~e---lvL----~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adi 72 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---IAL----VDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEI 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---EEE----ECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCce---EEE----EecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccE
Confidence 79999995 9999999999999998864 655 56778899999999999873332222 234567999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceee
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~ 246 (405)
||+++|.|++||++|.+++.+|++|++++++.|.++| |+++++++|||+|++|+++++.++ +|+ |+||+
T Consensus 73 Vvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg-~p~~rViG~ 142 (142)
T d1ojua1 73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESG-KPRNEVFGM 142 (142)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSC-CCTTSEEEC
T ss_pred EEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHC-CChhcEecC
Confidence 9999999999999999999999999999999999997 999999999999999999999984 665 88884
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=99.97 E-value=5.1e-31 Score=232.97 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=127.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
+.+..||+|||| |+||+++++.|+..++++| +.| +|+++++++|+++||+|+.........+..++|++++|
T Consensus 17 ~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~E---lvL----iD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~ 88 (160)
T d1i0za1 17 TVPNNKITVVGV-GQVGMACAISILGKSLADE---LAL----VDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTAN 88 (160)
T ss_dssp CCCSSEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE----ECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTT
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCcE---EEE----EEeccchhHHHHHHHhccccccCCCeEEeccchhhccc
Confidence 445579999995 9999999999999999874 665 67778899999999999873333445667889999999
Q ss_pred CcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Ccee
Q 015501 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (405)
Q Consensus 173 ADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig 245 (405)
||+||+++|.+++||++|.+++.+|++|++++++.|.+++ |++++|++|||+|+||+++++.+ ++|+ |+||
T Consensus 89 adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~-p~aiiivvtNPvDv~t~~~~k~s-glp~~rViG 160 (160)
T d1i0za1 89 SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYS-PDCIIIVVSNPVDILTYVTWKLS-GLPKHRVIG 160 (160)
T ss_dssp CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred ccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchHHHHHHHHHHH-CcCcccccC
Confidence 9999999999999999999999999999999999999996 99999999999999999999998 5675 8786
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Probab=99.97 E-value=4.5e-31 Score=234.72 Aligned_cols=153 Identities=16% Similarity=0.228 Sum_probs=130.4
Q ss_pred ecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc--ccHHHHHHHHHhhhHHHH
Q 015501 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTETIQKRGGLLI 323 (405)
Q Consensus 246 ~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~--~~~~el~~~v~~~~~~ii 323 (405)
+||.||++||+++||+++|+++++|++ +||||||++|+|+||+++++|.|+.++..... ....++.+.+++++..++
T Consensus 1 sGT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (169)
T d1ldma2 1 SGCNLDSARFRYLMGERLGVHSCSCHG-WVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVI 79 (169)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBC-CBCBCSSTTCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCccchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEe
Confidence 589999999999999999999999986 89999999999999999999999998765432 223345556666777777
Q ss_pred HhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 324 ~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
..+|.+.++ +|.++++++..++ .+++.+++++++++| +||+++++|||+||++|++|++++++ ++|+++|+++|+
T Consensus 80 ~~~~s~~~a-~a~~~~~~~~~~~--~~~~~~~~~~~~~~g-~ygi~~~i~~s~Pv~lg~~Gv~~v~~-l~L~~~E~~~l~ 154 (169)
T d1ldma2 80 KLKGYTSWA-IGLSVADLAETIM--KNLCRVHPVSTMVKD-FYGIKDNVFLSLPCVLNDHGISNIVK-MKLKPNEEQQLQ 154 (169)
T ss_dssp HHHSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSCCEEEEEEEEETTEEEEECC-CCCCHHHHHHHH
T ss_pred ccccchhhH-HHHHHhhhhheec--CCCCceeeeeeeccc-ccCCcCCceEEeeEEEcCCcEEEEec-CCCCHHHHHHHH
Confidence 788876653 6666666666666 678999999999999 89999999999999999999999985 999999999998
Q ss_pred h
Q 015501 404 K 404 (405)
Q Consensus 404 ~ 404 (405)
+
T Consensus 155 ~ 155 (169)
T d1ldma2 155 K 155 (169)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=7.8e-31 Score=234.08 Aligned_cols=151 Identities=22% Similarity=0.340 Sum_probs=133.4
Q ss_pred cchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccc----cHHHHHHHHHhhhHHH
Q 015501 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW----LEEGFTETIQKRGGLL 322 (405)
Q Consensus 247 gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~----~~~el~~~v~~~~~~i 322 (405)
||.||++||+++||+++|++|++|+. +||||||++|||+||+++++|.|+.+++.+..+ ..+++.+.++++++++
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (172)
T d1a5za2 1 GTVLDTARLRTLIAQHCGFSPRSVHV-YVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEI 79 (172)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHCcCHHHeEE-EEEecCCCCcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeE
Confidence 79999999999999999999999985 899999999999999999999999988754332 2456778888899999
Q ss_pred HHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHH
Q 015501 323 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 402 (405)
Q Consensus 323 i~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l 402 (405)
+..+|.+.++ +|.++++++..++ .+++.+++++++.+| +||. +++|||+||++|++|++++++ ++|+++|+++|
T Consensus 80 ~~~~~~~~~~-~a~a~~~~~~~~~--~~~~~~~~~~~~~~g-~~~~-~~v~~s~P~~lg~~Gv~~v~~-l~Ls~~E~~~l 153 (172)
T d1a5za2 80 IERKGATHYA-IALAVADIVESIF--FDEKRVLTLSVYLED-YLGV-KDLCISVPVTLGKHGVERILE-LNLNEEELEAF 153 (172)
T ss_dssp HHHHSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEESS-BTTB-CSEEEEEEEEEETTEEEEECC-CCCCHHHHHHH
T ss_pred eeccccchhh-HHHHHHHHHHHHH--hhcccceeeeccccc-cccc-CCeeEeeeEEEcCCceEEEeC-CCCCHHHHHHH
Confidence 9988887774 6677778888777 578999999999999 7887 699999999999999999995 99999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 154 ~~ 155 (172)
T d1a5za2 154 RK 155 (172)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.97 E-value=2.5e-31 Score=231.85 Aligned_cols=140 Identities=17% Similarity=0.246 Sum_probs=118.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
+||+|||| |+||+++++.|+..+++++ +.| +|+++++++|+++||+|+...+..+..+.+++|++++|||+|
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~e---lvL----~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiV 73 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADD---YVF----IDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVV 73 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE----ECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEE
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCce---EEE----EecccchhhhHHHhhhccccccCCccceeccCHHHhccccEE
Confidence 69999995 9999999999999998764 665 566778999999999998744444555667899999999999
Q ss_pred EEeCCcCC----CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceee
Q 015501 177 LLIGAKPR----GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (405)
Q Consensus 177 Ii~~g~~~----k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~ 246 (405)
|+++|.+| +||++|.+++.+|++|++++++.|+++| |++++|++|||+|+||++++|.+ ++|+ |+||+
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~s-g~p~~rViGt 146 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVT-GFPAHKVIGT 146 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEEC
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHh-CCCccceeCc
Confidence 99999877 7899999999999999999999999997 99999999999999999999998 5775 88874
|
| >d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=3.1e-31 Score=232.31 Aligned_cols=137 Identities=21% Similarity=0.309 Sum_probs=119.7
Q ss_pred cchhhHHHHHHHHHHHhCCCCCCc-eeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh
Q 015501 247 LTRLDENRAKCQLALKAGVFYDKV-SNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK 325 (405)
Q Consensus 247 gt~LDs~R~~~~lA~~l~v~~~~V-~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~ 325 (405)
||.|||+|||++|++..+ .++ ++ |||||||++|||+||.++++|.+. .+++.+.+++++++|+++
T Consensus 1 Gt~LDsaR~r~~l~~~~~---~~v~~a-~ViGeHGds~vp~~S~~~i~g~~~----------~~~i~~~v~~~g~eIi~~ 66 (152)
T d1ojua2 1 GNQLDSQRLKERLYNAGA---RNIRRA-WIIGEHGDSMFVAKSLADFDGEVD----------WEAVENDVRFVAAEVIKR 66 (152)
T ss_dssp SHHHHHHHHHHHHHHTTC---BSCCCC-CEEBCSSTTCEECGGGCCCBSCCC----------HHHHHHHHHTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCC---CCccee-EEEecCCCccccccccccccCccc----------hhHhHHHHHHHHHHhhhh
Confidence 789999999999987655 445 54 999999999999999999999763 357888999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 326 ~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
||.++|+ +|.++++++.+++ .|++.++|+|++++| +||+ +|+|+|+||++|++|+ ++++ ++|+++|+++|++
T Consensus 67 kG~t~~g-ia~a~~~iv~aIl--~d~~~v~pvs~~l~g-eyG~-~dv~lsvP~vig~~Gv-ei~~-l~L~~~E~~~l~~ 138 (152)
T d1ojua2 67 KGATIFG-PAVAIYRMVKAVV--EDTGEIIPTSMILQG-EYGI-ENVAVGVPAKLGKNGA-EVAD-IKLSDEEIEKLRN 138 (152)
T ss_dssp HSSCCHH-HHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE-EECC-CCCCHHHHHHHHH
T ss_pred ccceecc-HHHHHHHHHHHHH--hcCCCceeeeEEecc-ccCC-CCEEEEeEEEECCCce-EEEc-CCCCHHHHHHHHH
Confidence 9999874 6666666666666 789999999999999 7999 6999999999999998 5884 9999999999975
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=6.8e-31 Score=233.94 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=134.0
Q ss_pred ecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcc-----ccHHHHHHHHHhhhH
Q 015501 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKRGG 320 (405)
Q Consensus 246 ~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~-----~~~~el~~~v~~~~~ 320 (405)
+||.||++||+++||+++|+++++|+. +||||||++|+|+||+++|+|.|+.+++.+.. +..+++.+.++.++.
T Consensus 1 tGT~LD~~R~~~~vA~~l~v~~~~V~~-~ViG~Hs~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (172)
T d2ldxa2 1 SGCNLDSARFRYLIGEKLGVNPTSCHG-WVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGY 79 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCTTSSCC-CEEECSSSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCcCHHHcEE-EEEcCCCCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhcccee
Confidence 589999999999999999999999984 89999999999999999999999987764422 234567778888888
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHH
Q 015501 321 LLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 400 (405)
Q Consensus 321 ~ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~ 400 (405)
.++..+|.+.++ +|.++.+++..++ .+++.+++++++++| +||+++++|||+||++|++|++++++ ++|+++|++
T Consensus 80 ~~~~~k~~s~~~-~a~~~~~~~~~~~--~~~~~~~~~~~~~~g-~ygi~~~i~~s~Pv~ig~~Gv~~v~~-l~L~~~E~~ 154 (172)
T d2ldxa2 80 EVLDMKGYTSWA-IGLSVTDLARSIL--KNLKRVHPVTTLVKG-FHGIKEEVFLSIPCVLGESGITDFVK-VNMTAEEEG 154 (172)
T ss_dssp HHHHHHSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSSCEEEEEEEEETTEEEEEEC-CCCCHHHHH
T ss_pred ehhhcccchhHH-HHHHHhHHHHhhc--CCCccceeeeeeccc-ccCCcCCeEEEEEEEEcCCCEEEEec-CCCCHHHHH
Confidence 888888887764 6677777777777 578999999999999 89999999999999999999999984 999999999
Q ss_pred HHhh
Q 015501 401 RIAK 404 (405)
Q Consensus 401 ~l~~ 404 (405)
+|++
T Consensus 155 ~l~~ 158 (172)
T d2ldxa2 155 LLKK 158 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.97 E-value=1e-30 Score=231.54 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=126.8
Q ss_pred cchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc
Q 015501 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW 326 (405)
Q Consensus 247 gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~ 326 (405)
||.||++||+++||+++|+++++|++ +||||||++|||+||+++++|+|+.+++.+++|..+++.+.++++++++++.+
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k 79 (163)
T d1hyha2 1 GTLLDTARMQRAVGEAFDLDPRSVSG-YNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK 79 (163)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGCBC-CEEBCTTTTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCcCHHHeEE-EEEcCCCCcCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHHH
Confidence 79999999999999999999999985 89999999999999999999999999988878888999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 327 G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.+.|+ .|..+.+++..+. .++..+++++.+..+ +++|||+||++|++|++++++ ++|+++||++|++
T Consensus 80 g~~~~~-~a~~~~~~~~~~~--~~~~~~~~~s~~~~~------~~~~~s~Pv~ig~~Gv~~v~~-l~Ls~~E~~~l~~ 147 (163)
T d1hyha2 80 GYTSYG-VATSAIRIAKAVM--ADAHAELVVSNRRDD------MGMYLSYPAIIGRDGVLAETT-LDLTTDEQEKLLQ 147 (163)
T ss_dssp SSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT------TCSEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred HhHHHh-HHHHhhHHHHHhc--CCccceeeeceecCC------cceEEEeEEEEcCCeEEEEec-CCCCHHHHHHHHH
Confidence 998884 5555666666665 578889999877554 468999999999999999985 9999999999975
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.97 E-value=6.7e-31 Score=233.08 Aligned_cols=147 Identities=20% Similarity=0.372 Sum_probs=128.8
Q ss_pred hhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHh--c
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKK--W 326 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~--~ 326 (405)
+||++||+++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.++ ..+++.+.++++|+++++. +
T Consensus 3 ~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~s~vp~~s~~~i~g~~~~~~~~~~--~~~~~~~~v~~~g~~ii~~~~k 79 (163)
T d1guza2 3 VLDAARFRSFIAMELGVSMQDINA-CVLGGHGDAMVPVVKYTTVAGIPISDLLPAE--TIDKLVERTRNGGAEIVEHLKQ 79 (163)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHSCHH--HHHHHHHHHHTHHHHHHHHHSS
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccCHhhcccCCccccccCCHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999985 8999999999999999999999999987543 3578999999999999874 4
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 327 G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.+.+ +++.++.+.+..++ .+++.++|++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 80 gsa~~-a~~~~~~~~~~~i~--~~~~~~~~~~~~~~~-~~g~-~~~~~s~P~~lg~~Gv~~i~~-l~Ls~~E~~~l~~ 151 (163)
T d1guza2 80 GSAFY-APASSVVEMVESIV--LDRKRVLPCAVGLEG-QYGI-DKTFVGVPVKLGRNGVEQIYE-INLDQADLDLLQK 151 (163)
T ss_dssp SCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred CCcch-hHHHHHHHHHHhee--ccCCCEEEEeeeecc-ccCC-CCcEEEEeeEEcCCeeEEEec-CCCCHHHHHHHHH
Confidence 55554 46666666666555 689999999999999 7999 699999999999999999995 9999999999985
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.97 E-value=1.2e-30 Score=233.50 Aligned_cols=151 Identities=26% Similarity=0.395 Sum_probs=126.3
Q ss_pred cchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHH---HHHHHHHhhhHHHH
Q 015501 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE---GFTETIQKRGGLLI 323 (405)
Q Consensus 247 gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~---el~~~v~~~~~~ii 323 (405)
|++||++||+++||+++|++|++|+ ++||||||++|||+||+++|+|.|+.+++.+..+... ++....+.++.+++
T Consensus 1 ~c~LDs~R~~~~lA~~l~v~~~~V~-~~ViG~Hg~t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (174)
T d1pzga2 1 ACMLDSGRFRRYVADALSVSPRDVQ-ATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIV 79 (174)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGGEE-CCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhCcCHHHcE-EEEEccCCCccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEe
Confidence 5789999999999999999999997 5899999999999999999999999988876554433 33444555666654
Q ss_pred H--hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHH
Q 015501 324 K--KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 401 (405)
Q Consensus 324 ~--~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~ 401 (405)
. ++|.+.++ +|.++++.+..++ .|++.+++++++.+| +||++ +++||+||+||++|++.++ +++|+++|+++
T Consensus 80 ~~~~~gst~~~-~a~a~~~~~~~i~--~~~~~~~~~s~~~~~-~yGi~-~v~~s~Pv~ig~~Gi~~v~-~l~l~~~E~~~ 153 (174)
T d1pzga2 80 RFLGQGSAYYA-PAASAVAMATSFL--NDEKRVIPCSVYCNG-EYGLK-DMFIGLPAVIGGAGIERVI-ELELNEEEKKQ 153 (174)
T ss_dssp HHHSSSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHH
T ss_pred eeecccchhhh-hHHHHHHHHHhhc--ccCCceEEeeecccc-ccCCC-CceeeeeeEEcCCcEEEEe-CCCCCHHHHHH
Confidence 4 56666553 6667777777666 689999999999999 89995 7999999999999999988 59999999999
Q ss_pred Hhh
Q 015501 402 IAK 404 (405)
Q Consensus 402 l~~ 404 (405)
|++
T Consensus 154 l~~ 156 (174)
T d1pzga2 154 FQK 156 (174)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=2.4e-30 Score=225.34 Aligned_cols=141 Identities=20% Similarity=0.377 Sum_probs=121.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc--ceEEEe-cCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIG-INPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~-~~~~eal~dA 173 (405)
|||+||||+|+||+++++.|+..+++++ +. |+|++.+.++++|+++||+|+..... .++.+. +++|++++||
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~e---l~--L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKD---LV--LIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCE---EE--EEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccc---cc--cccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccc
Confidence 7999999779999999999999999864 44 55566666789999999999864433 344443 5689999999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Ccee
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig 245 (405)
|+||+++|.||+||++|.+++.+|++|++++++.+.++| |++++ ++|||+|+|++++++.+ ++|+ |+||
T Consensus 76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~-~~~ii-vVtNPvD~mt~~~~k~s-g~p~~rViG 145 (145)
T d1hyea1 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIF-VITNPVDVMTYKALVDS-KFERNQVFG 145 (145)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEE-ECSSSHHHHHHHHHHHH-CCCTTSEEE
T ss_pred eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccC-CCeEE-EEcCchHHHHHHHHHHH-CcCcccccC
Confidence 999999999999999999999999999999999999997 88764 68999999999999998 4665 8886
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.97 E-value=2.1e-30 Score=230.21 Aligned_cols=149 Identities=18% Similarity=0.250 Sum_probs=131.7
Q ss_pred hhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccH---HHHHHHHHhhhHHHHHh
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE---EGFTETIQKRGGLLIKK 325 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~---~el~~~v~~~~~~ii~~ 325 (405)
+||++||+++||+++|++|++|+. +||||||++|+|+||+++++|.|+.+...+..|.. +++.+.++++++.+++.
T Consensus 2 ~LD~~R~~~~la~~lgv~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 80 (165)
T d1t2da2 2 VLDTSRLKYYISQKLNVCPRDVNA-HIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL 80 (165)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence 699999999999999999999985 89999999999999999999999998876555433 45677888899999999
Q ss_pred cCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 326 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 326 ~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
+|.++|+ +|.++++.+..++ .+.+.++|++++++| +||+ +|++||+||++|++|++++++ ++|+++|+++|++
T Consensus 81 ~~~~~~a-~a~a~~~~~~~i~--~~~~~~~~~~v~~~g-~yg~-~~v~~s~Pv~lg~~Gv~~i~~-l~L~~~E~~~L~~ 153 (165)
T d1t2da2 81 HASPYVA-PAAAIIEMAESYL--KDLKKVLICSTLLEG-QYGH-SDIFGGTPVVLGANGVEQVIE-LQLNSEEKAKFDE 153 (165)
T ss_dssp TSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred ccceeec-hhHHHHHHHHHHh--hccccceeeeecccc-cccc-CCeeEeeeEEEcCCceEEEeC-CCCCHHHHHHHHH
Confidence 9988774 6667777777666 688999999999999 7998 699999999999999999995 9999999999974
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.97 E-value=2e-30 Score=231.17 Aligned_cols=150 Identities=20% Similarity=0.347 Sum_probs=132.3
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccH---HHHHHHHHhhhHHHHH
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE---EGFTETIQKRGGLLIK 324 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~---~el~~~v~~~~~~ii~ 324 (405)
|.||++||+.+||+++|++|++|+. +||||||++|||+||+++|+|.|+.+++.+..+.. +++.+.++.+++++++
T Consensus 1 T~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 79 (171)
T d1ez4a2 1 TSLDSSRLRVALGKQFNVDPRSVDA-YIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN 79 (171)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEESSSSSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEE-EEEccCCCcccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence 7899999999999999999999985 89999999999999999999999998887655443 4566778888899999
Q ss_pred hcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 325 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 325 ~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
.+|.+.++ +|.++.+++..++ ++++.+++++++++| +||+ +++|||+||++|++|++++++ ++|+++|+++|++
T Consensus 80 ~k~s~~~a-~a~~~~~~~~~i~--~~~~~~~~~~~~~~~-~~g~-~~~~~S~Pv~lg~~Gv~~v~~-l~Ls~~E~~~l~~ 153 (171)
T d1ez4a2 80 LKGATFYG-IGTALMRISKAIL--RDENAVLPVGAYMDG-QYGL-NDIYIGTPAIIGGTGLKQIIE-SPLSADELKKMQD 153 (171)
T ss_dssp HHSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred hhhhHhHH-HHHHHHHHHHHHh--ccCCceEEEEEeecc-ccCc-cceeeeEEEEEcCCcEEEEeC-CCCCHHHHHHHHH
Confidence 99988764 6666777777666 688999999999999 8998 799999999999999999985 9999999999985
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.97 E-value=1.6e-30 Score=225.57 Aligned_cols=140 Identities=25% Similarity=0.360 Sum_probs=121.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~~~eal~dADi 175 (405)
|||+|||| |+||+++++.|+..+++++ +.| +|++++++++.++|++|.........++ .++++++++|||+
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~e---l~L----~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadv 72 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARE---LVL----LDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDI 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE----ECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCce---EEE----eccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeE
Confidence 79999995 9999999999999998763 655 5666788999999999876322223333 3578999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceee
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~ 246 (405)
||+++|.|++||++|.+++.+|+++++++++.|.++| |++|++++|||+|++|+++++.+ ++|+ |+||+
T Consensus 73 vvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvd~~~~~~~~~s-g~p~~rviG~ 142 (142)
T d1guza1 73 VIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGM 142 (142)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHHH-CSCGGGEEEE
T ss_pred EEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCChHHHHHHHHHHh-CCChHhEeeC
Confidence 9999999999999999999999999999999999997 99999999999999999999998 5775 88884
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.97 E-value=2.4e-30 Score=229.66 Aligned_cols=147 Identities=23% Similarity=0.363 Sum_probs=129.1
Q ss_pred hhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHH--hc
Q 015501 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK--KW 326 (405)
Q Consensus 249 ~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~--~~ 326 (405)
+||++||+++||+++|+++++|++ +||||||+++||+||+++++|.|+.+++.+ +..+++.+.++++++++++ ++
T Consensus 3 ~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~i~g~~~~~~~~~--~~~~~~~~~v~~~g~~ii~~~~k 79 (164)
T d1uxja2 3 VLDAARYRTFIAMEAGVSVKDVQA-MLMGGHGDEMVPLPRFSTISGIPVSEFIAP--DRLAQIVERTRKGGGEIVNLLKT 79 (164)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEE-CCEECSGGGEECCGGGEEETTEEGGGTSCH--HHHHHHHHHHHTHHHHHHHHHSS
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCceeeeeeeeecCCCchhhccch--hhHHHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999985 899999999999999999999999887654 3457899999999999975 45
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 327 G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.+.+ ++|.++.+++..++ .+++.++|++++++| +||+ ++++||+||++|++|++++++ ++|+++|+++|++
T Consensus 80 gs~~~-a~a~a~~~i~~~i~--~~~~~~~~~~~~~~g-~ygi-~~~~~s~P~~ig~~Gv~~v~~-l~L~~~E~~~l~~ 151 (164)
T d1uxja2 80 GSAYY-APAAATAQMVEAVL--KDKKRVMPVAAYLTG-QYGL-NDIYFGVPVILGAGGVEKILE-LPLNEEEMALLNA 151 (164)
T ss_dssp SCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred Ccccc-hHHHHHHHHHHHHh--CCCCceeeeeeeecc-ccCC-CCceEEECeEEeCCeeEEEeC-CCCCHHHHHHHHH
Confidence 55555 46667777776666 678899999999999 8999 589999999999999999985 9999999999975
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=5.1e-30 Score=223.20 Aligned_cols=140 Identities=24% Similarity=0.307 Sum_probs=117.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|||+||||+|+||+++++.|+.+ ++.. ++. |+|+ . +.++|+++||.|+.+........++++|++++|||+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~---el~--L~D~--~-~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDv 72 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGS---ELS--LYDI--A-PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADV 72 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTC---EEE--EECS--S-TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCc---EEE--Eecc--c-ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCE
Confidence 79999997799999999998765 5554 344 4443 3 467899999999874444444445778999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHH---HCCCCCC-Ccee
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK---NAPSIPA-KNFH 245 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k---~s~~~~~-k~ig 245 (405)
||+++|.||+||++|.+++.+|.+|++++++.|.+++ |++++|++|||+|+|++++++ .++.+|+ |+||
T Consensus 73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG 145 (145)
T d2cmda1 73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG 145 (145)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence 9999999999999999999999999999999999997 999999999999999998764 3456775 7776
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=3.2e-30 Score=227.68 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=125.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
..||+|||| |+||+++|+.|+..+++++ +.| +|+++++++|+++||+|+.+.......+..++|++++|||+
T Consensus 19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~e---lvL----~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adi 90 (159)
T d2ldxa1 19 RCKITVVGV-GDVGMACAISILLKGLADE---LAL----VDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKL 90 (159)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTSCSE---EEE----ECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCCE---EEE----EeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccE
Confidence 469999995 9999999999999999764 665 57777899999999999874333455666788999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Ccee
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig 245 (405)
||+++|.|++||++|.+++..|+++++++++.|.+++ |+++++++|||+|+||+++++.++ +|+ |+||
T Consensus 91 vvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvtNPvDv~t~~~~k~sg-~p~~rV~G 159 (159)
T d2ldxa1 91 VIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNPVDILTYVVWKISG-FPVGRVIG 159 (159)
T ss_dssp EEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECSSSHHHHHHHHHHHHC-SCTTTEEE
T ss_pred EEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeCCcHHHHHHHHHHHHC-cCcccccC
Confidence 9999999999999999999999999999999999996 999999999999999999999985 665 8887
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.96 E-value=2.9e-29 Score=222.54 Aligned_cols=150 Identities=21% Similarity=0.334 Sum_probs=127.4
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhcccc----HHHHHHHHHhhhHHHH
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKRGGLLI 323 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~----~~el~~~v~~~~~~ii 323 (405)
|.||++||+.+||+++|+++++|+. +||||||+++||+||+++|+|.++.+++.+..+. .+++.+.++..++.++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 79 (168)
T d1ldna2 1 TILDTARFRFLLGEYFSVAPQNVHA-YIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII 79 (168)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHeEE-EEEcCCCCccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence 7899999999999999999999984 8999999999999999999999998877554332 3456677777778888
Q ss_pred HhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 324 ~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
..+|.+.++ ++....+.+..++ .+.+.+++++++.+| +||. +|++||+||++|++|+++++ +++|+++|+++|+
T Consensus 80 ~~~~~s~~~-~a~~~~~~~~~~~--~~~~~~~~~~~~~~~-~yg~-~~v~~s~Pv~lg~~Gv~~v~-~l~Ls~~E~~~L~ 153 (168)
T d1ldna2 80 EKKGATYYG-IAMGLARVTRAIL--HNENAILTVSAYLDG-LYGE-RDVYIGVPAVINRNGIREVI-EIELNDDEKNRFH 153 (168)
T ss_dssp HHHSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-TTSC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred Hhhccccch-HHHHHhhHHHhhh--cccceeeeeeeeecc-ccCC-CCeeecceEEEcCCeEEEEe-CCCCCHHHHHHHH
Confidence 888877664 4555555666555 578899999999999 7996 79999999999999999988 5999999999998
Q ss_pred h
Q 015501 404 K 404 (405)
Q Consensus 404 ~ 404 (405)
+
T Consensus 154 ~ 154 (168)
T d1ldna2 154 H 154 (168)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.96 E-value=7.6e-31 Score=234.30 Aligned_cols=150 Identities=24% Similarity=0.336 Sum_probs=128.8
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccc----cHHHHHHHHHhhhHHHH
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW----LEEGFTETIQKRGGLLI 323 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~----~~~el~~~v~~~~~~ii 323 (405)
|.||++||+++||+++|+++++|+. +||||||++|+|+||+++++|.|+.+++.+..+ ..+++.+.+++++++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 79 (172)
T d1llca2 1 TSLDTARFRQSIAEMVNVDARSVHA-YIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII 79 (172)
T ss_dssp THHHHHHHHHHHHHHSCCCTTSCEE-EEEBSSSSSCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred CchHHHHHHHHHHHHhCcCHHHeEE-EEEcCCCCcceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence 7899999999999999999999985 899999999999999999999999887654332 22456677788899999
Q ss_pred HhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 324 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 324 ~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
+.+|.+.++ .|.+.++.+..++ .+++.++|++++++| +||++ +++||+||++|++|++++++ ++|+++|+++|+
T Consensus 80 ~~kg~~~~a-~a~~~~~~~~~~~--~~~~~~~~~~~~~~g-~ygi~-~~~~s~P~~lg~~Gv~~i~~-l~L~~~E~~~l~ 153 (172)
T d1llca2 80 KLKGATFYG-IATALARISKAIL--NDENAVLPLSVYMDG-QYGIN-DLYIGTPAVINRNGIQNILE-IPLTDHEEESMQ 153 (172)
T ss_dssp SSSSCTTHH-HHHHHHHHHHHHH--HTCCCCEECCCCCSS-SSSCC-SSCCBCEEEEETTEEEEECC-CCCTTHHHHHHH
T ss_pred Hhhhhhhhh-hHHHHHHHHHHHh--cCCCCccceeeeecC-ccCcc-cceEEEEEEEcCCceEEEec-CCCCHHHHHHHH
Confidence 999988774 5555555566555 578899999999999 79994 89999999999999999995 999999999997
Q ss_pred h
Q 015501 404 K 404 (405)
Q Consensus 404 ~ 404 (405)
+
T Consensus 154 ~ 154 (172)
T d1llca2 154 K 154 (172)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=8.5e-29 Score=215.21 Aligned_cols=138 Identities=23% Similarity=0.313 Sum_probs=115.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cCcccccCCCcEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWA 176 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~~~eal~dADiV 176 (405)
||+||||+|+||+++|+.|+.++++++ +.| + |.+ +.+++++|++|..........+. .+.+++++|||+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~e---lvL--i--Di~--~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSR---LTL--Y--DIA--HTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSE---EEE--E--ESS--SHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccce---EEE--E--ecc--ccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence 999999779999999999999999864 554 3 333 35789999999873332333343 4568899999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH---HHCCCCCC-Ccee
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL---KNAPSIPA-KNFH 245 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~---k~s~~~~~-k~ig 245 (405)
|+++|.||+|||+|.+++..|.++++++++.|.+++ |+++++++|||+|++|++++ +..+++|+ |+||
T Consensus 73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG 144 (144)
T d1mlda1 73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 144 (144)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence 999999999999999999999999999999999996 99999999999999888764 44556776 7786
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.96 E-value=5.4e-29 Score=217.85 Aligned_cols=141 Identities=21% Similarity=0.330 Sum_probs=120.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceE-EEecCcccccCCCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-KIGINPYELFEDAE 174 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v-~i~~~~~eal~dAD 174 (405)
..||+|||| |+||+++++.|+++++ . ++.| +|+++++++|+++||+|+......+. ...+++|++++|||
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~---el~L----~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~ad 73 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNL-G---DVVL----FDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD 73 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-C---EEEE----ECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCC-C---eEEE----EeccCCcceeeecchhhhccccCCCcEEEecccccccCCCc
Confidence 469999995 9999999999998886 2 3554 56677899999999999852222232 33358899999999
Q ss_pred EEEEeCCcCCCCCCc-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cceeec
Q 015501 175 WALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (405)
Q Consensus 175 iVIi~~g~~~k~g~~-----r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig~g 247 (405)
+||+++|.+++||++ |.+++.+|+++++++++.|.++| |+++++++|||+|+||+++++.+ ++|+ |+||+|
T Consensus 74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~~~s-g~p~~rViG~G 150 (150)
T d1t2da1 74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLG 150 (150)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECC
T ss_pred EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchHHHHHHHHHHH-CCCchheeccC
Confidence 999999999999875 99999999999999999999997 99999999999999999999998 4665 889986
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.95 E-value=1.5e-28 Score=216.22 Aligned_cols=147 Identities=24% Similarity=0.328 Sum_probs=126.7
Q ss_pred cchhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc
Q 015501 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW 326 (405)
Q Consensus 247 gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~ 326 (405)
||+||++||+++||+++|+++++|++ +||||||++++|+||+++++|.+..... +..+++.+.++.+++++++.+
T Consensus 2 Gt~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~ 76 (161)
T d1o6za2 2 GGRLDSARFRYVLSEEFDAPVQNVEG-TILGEHGDAQVPVFSKVSVDGTDPEFSG----DEKEQLLGDLQESAMDVIERK 76 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTBCCCCCH----HHHHHHHHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHHHHHHHCcCHHHeEE-EEEeCCCCceeeehhhhcccccccccch----HHHHHHHHHhhhhHHHHHHhh
Confidence 69999999999999999999999996 8999999999999999999998864321 124567788888999999988
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHhh
Q 015501 327 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 404 (405)
Q Consensus 327 G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~~ 404 (405)
|.+.++ +|.++++++..++ .+.+.+++++++.+| +||. +|++||+||++|++|++++++ ++|+|+|+++|++
T Consensus 77 ~~s~~~-~a~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~-~~i~~S~Pv~ig~~Gv~~v~~-l~l~~~E~~~L~~ 148 (161)
T d1o6za2 77 GATEWG-PARGVAHMVEAIL--HDTGEVLPASVKLEG-EFGH-EDTAFGVPVSLGSNGVEEIVE-WDLDDYEQDLMAD 148 (161)
T ss_dssp SSCCHH-HHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHH
T ss_pred hhhhhH-HHHhhHhhhHhhh--hccccceeecccccc-cccc-cCceeeeeeEEcCCCEEEEeC-CCCCHHHHHHHHH
Confidence 887764 6666777776666 578899999999999 6876 799999999999999999994 9999999999985
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.95 E-value=4.6e-29 Score=216.43 Aligned_cols=138 Identities=23% Similarity=0.338 Sum_probs=110.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~~~eal~dADi 175 (405)
+||+|||| |+||+++|+.|+..++. ++.| +|.+++++++.++|+.|+........++ .+++|++++|||+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~----dl~l----~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~adv 72 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELG----DIVL----LDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDV 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCS----EEEE----ECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcc----eEEE----EeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCE
Confidence 59999995 99999999999998873 2444 5667789999999999986322223333 3578999999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Ccee
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ig 245 (405)
||+++|.|++||++|.+++..|+++++++++.|.+++ |+++++++|||+|+||+++++.+ ++|+ |+||
T Consensus 73 vvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNPvDv~t~~~~~~s-glp~~rViG 141 (142)
T d1uxja1 73 IVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEVS-GFPKERVIG 141 (142)
T ss_dssp EEECCSCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred EEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCchHHHHHHHHHHH-CcCcccccC
Confidence 9999999999999999999999999999999999996 99999999999999999999998 4665 8887
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.95 E-value=2.4e-28 Score=214.69 Aligned_cols=144 Identities=20% Similarity=0.262 Sum_probs=123.3
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--CcceEEEecCcccc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYEL 169 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~~~~~ea 169 (405)
|+++.+||+|||| |+||+++++.|++.++. ++.| +|.++++++|+++||.|.... ....+..+.+.+++
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~----el~L----~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~ 73 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA----DVVL----YDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 73 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC----EEEE----ECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCc----eEEE----EEeccccchhHHHHHhhhccccCCeeEEeccCchhhh
Confidence 6778899999996 99999999999988862 3554 566778999999999997522 22345555666789
Q ss_pred cCCCcEEEEeCCcCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCC-Cc
Q 015501 170 FEDAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KN 243 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~-----~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~-k~ 243 (405)
++|||+||+++|.+++||+ +|.+++.+|+++++++++.+.++| |+++++++|||+|++|+++++.++ +|+ |+
T Consensus 74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPvd~lt~~~~~~sg-~p~~rV 151 (154)
T d1pzga1 74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEASG-VPTNMI 151 (154)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHC-CCGGGE
T ss_pred hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcHHHHHHHHHHHhC-cChhcE
Confidence 9999999999999999985 899999999999999999999997 999999999999999999999984 665 88
Q ss_pred eee
Q 015501 244 FHA 246 (405)
Q Consensus 244 ig~ 246 (405)
||+
T Consensus 152 iG~ 154 (154)
T d1pzga1 152 CGM 154 (154)
T ss_dssp EEC
T ss_pred ecC
Confidence 884
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.92 E-value=3.1e-26 Score=203.58 Aligned_cols=144 Identities=21% Similarity=0.120 Sum_probs=109.5
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeec-CCCcccccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW 326 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~H-G~~~vp~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~ 326 (405)
|.||++||+++||+++|++|++|++ +|+|+| |++++|+||++.+++....+ ..+++.+.++++++++++.+
T Consensus 2 T~LDs~R~~~~la~~l~v~~~~V~~-~ViGeHg~~t~vp~~s~~~~~~~~~~~-------~~~~l~~~v~~~~~eii~~k 73 (169)
T d1mlda2 2 TTLDIVRANAFVAELKGLDPARVSV-PVIGGHAGKTIIPLISQCTPKVDFPQD-------QLSTLTGRIQEAGTEVVKAK 73 (169)
T ss_dssp CHHHHHHHHHHHHHHTTCCGGGCBC-CEEECSSGGGEEECGGGCBSCCCCCHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHeeE-EEEEcCCCcceeehhhhhccCCCCcHH-------HHHHHHHHHHHhHHHHHHhh
Confidence 7899999999999999999999996 889999 56677777877766544322 24678889999999999988
Q ss_pred CCchH--HHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHHH
Q 015501 327 GRSSA--ASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRI 402 (405)
Q Consensus 327 G~~~~--~s~A~~i~~ai~~~~~~-~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~l 402 (405)
|.+++ ++++.++++++..++.. .+...+.+ +..+ .||..+|++||+||++|++|++++++ + .|+++|+++|
T Consensus 74 ~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~v~~---~~~~-~~~~~~~v~~s~P~~ig~~Gi~~v~~-l~~L~~~E~~~l 148 (169)
T d1mlda2 74 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVE---CSFV-KSQETDCPYFSTPLLLGKKGIEKNLG-IGKISPFEEKMI 148 (169)
T ss_dssp TTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEE---EEEE-ECCSSSSSEEEEEEEEETTEEEEECC-CCSCCHHHHHHH
T ss_pred cCcChHhHHHHHHHHHHHHHhccccCCceEEEE---Eeec-cccccCCEeEeeeEEEcCCccEEEec-CCCCCHHHHHHH
Confidence 76543 55666666666655421 12233333 3334 45555789999999999999999996 6 7999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 149 ~~ 150 (169)
T d1mlda2 149 AE 150 (169)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.89 E-value=9.7e-24 Score=187.72 Aligned_cols=143 Identities=10% Similarity=-0.042 Sum_probs=109.8
Q ss_pred CCEEEEEcCCCchHHH--HHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc----CCCcceEEEecCcccc
Q 015501 96 MVNIAVSGAAGMIANH--LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~--la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~~~~~ea 169 (405)
.+||+|||| |++|.. ++..+.....+.. -.|.| +|+++++.++.++|+.+.. .....++..+++.+++
T Consensus 1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~---~eI~L--~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~a 74 (169)
T d1s6ya1 1 RLKIATIGG-GSSYTPELVEGLIKRYHELPV---GELWL--VDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRA 74 (169)
T ss_dssp CEEEEEETT-TCTTHHHHHHHHHHTTTTCCE---EEEEE--ECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred CcEEEEECC-ChhhHHHHHHHHHHhccccCC---CEEEE--EcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhh
Confidence 379999996 988865 3344444333321 24444 4555566677788876542 1233467778899999
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhh--------------------HHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGL--------------------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~l--------------------l~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
++|||+||++++.+++++++|.++ +.+|+++++++++.|+++| |++|+|++|||+|++|
T Consensus 75 l~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNPvdv~t 153 (169)
T d1s6ya1 75 LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGMVT 153 (169)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHH
T ss_pred cCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCChHHHHH
Confidence 999999999999888887776655 4699999999999999997 9999999999999999
Q ss_pred HHHHHHCCCCCCCceeec
Q 015501 230 LICLKNAPSIPAKNFHAL 247 (405)
Q Consensus 230 ~~~~k~s~~~~~k~ig~g 247 (405)
++++|.+| +.|+||+|
T Consensus 154 ~~~~k~~p--~~kviGlC 169 (169)
T d1s6ya1 154 EAVLRYTK--QEKVVGLC 169 (169)
T ss_dssp HHHHHHCC--CCCEEECC
T ss_pred HHHHHHCC--CCCEEeeC
Confidence 99999974 35999986
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.5e-24 Score=188.93 Aligned_cols=143 Identities=17% Similarity=0.070 Sum_probs=106.0
Q ss_pred chhhHHHHHHHHHHHhCCCCCCceeEEEEeecCCCcc-cccccceEcCcchHhhhhhccccHHHHHHHHHhhhHHHHHhc
Q 015501 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV-PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKW 326 (405)
Q Consensus 248 t~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG~~~v-p~~S~a~I~G~p~~~~~~~~~~~~~el~~~v~~~~~~ii~~~ 326 (405)
|.||++||+++||+++|++|++|++ +|+|+||++++ |++|++...+.+ .+..+++.+.++++++++++.+
T Consensus 2 T~LDs~R~~~~iA~~l~v~~~~V~~-~ViGghg~~~~~p~~s~~~~~~~~--------~~~~~~l~~~v~~~g~~ii~~~ 72 (167)
T d2cmda2 2 TTLDIIRSNTFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQVPGVSFT--------EQEVADLTKRIQNAGTEVVEAK 72 (167)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGCCC-CEEECSSTTTEEECGGGCTTCCCC--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHeEE-EEEEcCCCceEeeecccccCCCCc--------HHHHHHHHHHHHhhhhhhhhhh
Confidence 7899999999999999999999997 88998876655 554555322222 1335789999999999999755
Q ss_pred C---CchHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCC-CCCHHHHHHH
Q 015501 327 G---RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKRI 402 (405)
Q Consensus 327 G---~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~-~L~~~E~~~l 402 (405)
+ .+. .+.|.++++.+..++ .+.+...++++...+ +||.++++|||+||++|++|++++++ + .|+++|+++|
T Consensus 73 ~~~~~~~-~~~a~a~~~~~~~i~--~~~~~~~~~~~~~~~-~~~~~~~i~~s~P~~ig~~Gv~~v~~-l~~L~~~E~~~l 147 (167)
T d2cmda2 73 AGGGSAT-LSMGQAAARFGLSLV--RALQGEQGVVECAYV-EGDGQYARFFSQPLLLGKNGVEERKS-IGTLSAFEQNAL 147 (167)
T ss_dssp TTSCSCC-HHHHHHHHHHHHHHH--HHHTTCSSCEEEEEE-ECCCSSCSEEEEEEEEETTEEEEECC-CCCCCHHHHHHH
T ss_pred ccCcchH-HHHHHHHHHHHHHHh--ccCCCceEEEEEccc-ccccCCCccccccEEEeCCceEEEee-CCCCCHHHHHHH
Confidence 3 222 334444444444444 233444556666666 68877899999999999999999995 6 6999999999
Q ss_pred hh
Q 015501 403 AK 404 (405)
Q Consensus 403 ~~ 404 (405)
++
T Consensus 148 ~~ 149 (167)
T d2cmda2 148 EG 149 (167)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.6e-23 Score=185.97 Aligned_cols=142 Identities=15% Similarity=0.065 Sum_probs=110.3
Q ss_pred cCCCEEEEEcCCCchHHHHHH-HHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEecCcccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLF-KLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYEL 169 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~-~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~ea 169 (405)
++..||+|||| |++|.+.+. .++.. .-+. .-.|.| +|.+++++++.++|+.+... ....++..+++.+|+
T Consensus 1 ~k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~---~~eivL--~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea 74 (167)
T d1u8xx1 1 KKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFP---IRKLKL--YDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEA 74 (167)
T ss_dssp CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSC---EEEEEE--ECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHH
T ss_pred CCCceEEEECC-ChhhhHHHHHHHHhhhhhcC---CCEEEE--EcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhc
Confidence 35689999996 999987554 33322 1111 013444 45666889988888876542 233467888899999
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhH--------------------HhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLL--------------------DINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll--------------------~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t 229 (405)
++|||+||++++.++++|++|.+++ .+|+++++++++.|+++| |+||+|++|||+|++|
T Consensus 75 l~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~~TNPvdv~t 153 (167)
T d1u8xx1 75 FTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVA 153 (167)
T ss_dssp HSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHHHHH
T ss_pred cCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEEeCCHHHHHH
Confidence 9999999999999999999888775 467999999999999997 9999999999999999
Q ss_pred HHHHHHCCCCCCCce
Q 015501 230 LICLKNAPSIPAKNF 244 (405)
Q Consensus 230 ~~~~k~s~~~~~k~i 244 (405)
++++|++| +.|+|
T Consensus 154 ~~~~k~~P--~~rVI 166 (167)
T d1u8xx1 154 EATRRLRP--NSKIL 166 (167)
T ss_dssp HHHHHHST--TCCEE
T ss_pred HHHHHHCC--ccccc
Confidence 99999863 23766
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.2e-23 Score=185.88 Aligned_cols=141 Identities=14% Similarity=0.009 Sum_probs=107.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCC-CCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP-DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~-d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|||+|||| |++|...++..+....... ..+|. |+ |+++++++ .+.|+.+.......++.++++++++++|||+
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~--L~--Did~~k~~-~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDv 74 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVI--FY--DIDEEKQK-IVVDFVKRLVKDRFKVLISDTFEGAVVDAKY 74 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEE--EE--CSCHHHHH-HHHHHHHHHHTTSSEEEECSSHHHHHTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEE--EE--ecCcHHHH-HHHHHHHhhhccCceEEEecCcccccCCCCE
Confidence 79999996 9999998876554332211 02344 44 45556766 5677777654555678888999999999999
Q ss_pred EEEeCCcCCCCCCchhhhHH--------------------hhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLD--------------------INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~--------------------~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~ 235 (405)
||++++.+++++++|.+++. |+++++.++.+ +.++| |++|+|++|||+|++|+++++.
T Consensus 75 VVita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~-p~a~~i~vtNPvdiit~~~~~~ 152 (162)
T d1up7a1 75 VIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKT-SNATIVNFTNPSGHITEFVRNY 152 (162)
T ss_dssp EEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHT-TCCEEEECSSSHHHHHHHHHHT
T ss_pred EEEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccC-CCeEEEEeCCHHHHHHHHHHHh
Confidence 99999998888887776554 45667777766 66776 9999999999999999999998
Q ss_pred CCCCCCCceeec
Q 015501 236 APSIPAKNFHAL 247 (405)
Q Consensus 236 s~~~~~k~ig~g 247 (405)
+| +.|+||+|
T Consensus 153 ~p--~~rviGlC 162 (162)
T d1up7a1 153 LE--YEKFIGLC 162 (162)
T ss_dssp TC--CSSEEECC
T ss_pred CC--CCCEEeeC
Confidence 74 24999986
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=5.2e-22 Score=176.78 Aligned_cols=140 Identities=15% Similarity=0.177 Sum_probs=110.0
Q ss_pred CCEEEEEcCCCchHHHHHH--HHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC--CCcceEEEecCcccccC
Q 015501 96 MVNIAVSGAAGMIANHLLF--KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~--~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~~~~~eal~ 171 (405)
.|||+|||| |++|++++. .|+....+.. .+|.| +|++++++++.++|+.+... ....+++.+++.+++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~-~eivL----~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSG-STVTL----MDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTT-CEEEE----ECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCC-CEEEE----EeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhccc
Confidence 589999995 999987543 4554333321 24555 56677899999999988652 23346777889999999
Q ss_pred CCcEEEEeCC------------------cCCCCCCchhhh--------HHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 172 DAEWALLIGA------------------KPRGPGMERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 172 dADiVIi~~g------------------~~~k~g~~r~~l--------l~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
|||+|+++.+ .+++++++|.++ +.+|+++++++++.|+++| |++|+|++|||+
T Consensus 76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~-p~a~~i~~TNPv 154 (171)
T d1obba1 76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQAANPI 154 (171)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEECSSCH
T ss_pred CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHC-cCeEEEEECChH
Confidence 9999998743 345667777664 5689999999999999997 999999999999
Q ss_pred hHHHHHHHHHCCCCCCCcee
Q 015501 226 NTNALICLKNAPSIPAKNFH 245 (405)
Q Consensus 226 d~~t~~~~k~s~~~~~k~ig 245 (405)
|++|++++|+++ + |+||
T Consensus 155 dv~t~~~~k~~~-~--k~iG 171 (171)
T d1obba1 155 FEGTTLVTRTVP-I--KAVG 171 (171)
T ss_dssp HHHHHHHHHHSC-S--EEEE
T ss_pred HHHHHHHHHhcC-C--CccC
Confidence 999999999985 5 7776
|
| >d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=1.9e-09 Score=100.24 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhhhh-----------ccc---c----------
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD-----------HKW---L---------- 307 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~~~-----------~~~---~---------- 307 (405)
.-+.++||+.+|+++++|+ .-+.| || +.||.+++++|+.+..-+.+ ..| +
T Consensus 4 i~~~~~la~~lg~~~~~v~-~~~~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~ 78 (253)
T d1up7a2 4 INFIREIAEMFSARLEDVF-LKYYGLNH----LSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNP 78 (253)
T ss_dssp HHHHHHHHHHTTCCGGGEE-EEEEEETT----EEEEEEEEETTEECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECG
T ss_pred HHHHHHHHHHhCCCHHHcE-EEEEEECC----hhheEeeEECCEechHHHHHHHHHhccCCccccCcHHHHHhcCeeEcc
Confidence 4578999999999999999 47799 99 99999999999866542211 001 0
Q ss_pred -------HHHHHHHHHh---hhHH--------------------HHHhcCCchHHHHHHHHHHHHHHhhcCCCCCcEEEE
Q 015501 308 -------EEGFTETIQK---RGGL--------------------LIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSS 357 (405)
Q Consensus 308 -------~~el~~~v~~---~~~~--------------------ii~~~G~~~~~s~A~~i~~ai~~~~~~~~~~~i~~~ 357 (405)
.++..+.... ++.+ -+.+++...++..|..++++|. +|++.++.+
T Consensus 79 Yl~Yy~~~~~~~~~~~~~~tra~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~ai~-----~~~~~~~~v 153 (253)
T d1up7a2 79 YLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLE-----TDEGKIHIV 153 (253)
T ss_dssp GGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTHHHHHHHHHHHHH-----SSSCEEEEE
T ss_pred cchhhcCcHHHHHHhccccChHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcchHHHHHHHHHHHH-----cCCCcEEEE
Confidence 1122121111 1111 1235666667888899988888 789999999
Q ss_pred eeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 358 GVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 358 sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
+|.++|..-|+|+|+++++||+|+++|+.++-. .+|.+.....++
T Consensus 154 Nv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~ 198 (253)
T d1up7a2 154 NTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIH 198 (253)
T ss_dssp EEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHH
T ss_pred eCCCcCcCCCCChhhheEEEEEecCCccccccc-CCCcHHHHHHHH
Confidence 999999888999999999999999999998764 688888776654
|
| >d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.90 E-value=7.6e-09 Score=96.95 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEe-ecCCCcccccccceEcCcchHhhhhh----c-------------ccc-------
Q 015501 253 NRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD----H-------------KWL------- 307 (405)
Q Consensus 253 ~R~~~~lA~~l~v~~~~V~~~~V~G-~HG~~~vp~~S~a~I~G~p~~~~~~~----~-------------~~~------- 307 (405)
.-+.+.+|+.||+++++|+ +-+.| || +.|+...+.+|+.+.+.+.+ . .|.
T Consensus 4 i~~~~~la~~Lg~~~~~i~-~~~~GlNH----~~W~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (270)
T d1s6ya2 4 IGMRMGVAKLLGVDADRVH-IDFAGLNH----MVFGLHVYLDGVEVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGL 78 (270)
T ss_dssp HHHHHHHHHHHTSCGGGEE-EEEEEETT----EEEEEEEEETTEECHHHHHHHHSCC------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHcE-EEEEeeCC----HhHeeeeEECCccccHHHHHHHhcccccccccccccccCcCHHHHHhc
Confidence 3467889999999999999 57799 99 88999999999765532211 0 011
Q ss_pred -------------HHH-HHHH-------------HHhhhHHH---------------HHhcCCchHHHHHHHHHHHHHHh
Q 015501 308 -------------EEG-FTET-------------IQKRGGLL---------------IKKWGRSSAASTAVSIVDAMKSL 345 (405)
Q Consensus 308 -------------~~e-l~~~-------------v~~~~~~i---------------i~~~G~~~~~s~A~~i~~ai~~~ 345 (405)
.++ +.+. +.++..++ ....+...++..|+.|+++|.
T Consensus 79 ~~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~ai~-- 156 (270)
T d1s6ya2 79 KVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKRGGAYYSDAACSLISSIY-- 156 (270)
T ss_dssp CSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------CCSCCHHHHHHHHHHHHH--
T ss_pred ccEeccccccccccHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHhHHhccCcchhhhccCcchHHHHHHHHHHHh--
Confidence 011 1111 11111111 123444556788999999988
Q ss_pred hcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 346 VTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 346 ~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
+|++.++.++|.++|..-++|+|+++++||+|+++|+.++-. .+|.+..+..++
T Consensus 157 ---~~~~~~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~ 210 (270)
T d1s6ya2 157 ---NDKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV-GDLPVAVRGLVQ 210 (270)
T ss_dssp ---HTCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHH
T ss_pred ---cCCCeEEEEECCCCCcCCCCCccceEEEEEEEECCceEeeec-CCCcHHHHHHHH
Confidence 688999999999999888999999999999999999998764 689988877765
|
| >d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=1.5e-08 Score=95.18 Aligned_cols=141 Identities=14% Similarity=0.225 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhCCCC-CCceeEEEEe-ecCCCcccccccce-EcCcchHhhhhh-----------------ccccH---
Q 015501 252 ENRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNAR-INGLPVKEIIKD-----------------HKWLE--- 308 (405)
Q Consensus 252 s~R~~~~lA~~l~v~~-~~V~~~~V~G-~HG~~~vp~~S~a~-I~G~p~~~~~~~-----------------~~~~~--- 308 (405)
..-++..+|+.||+++ ++|+ +-+.| || +.||.+++ .+|+.+...+.+ ..|..
T Consensus 5 p~~~~~~ia~~Lgv~~~~ev~-~~~~GLNH----~~w~~~v~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (276)
T d1u8xx2 5 PVGIEDRMAQILGLSSRKEMK-VRYYGLNH----FGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFA 79 (276)
T ss_dssp HHHHHHHHHHHHTCSCGGGEE-EEEEEETT----EEEEEEEEETTCCBCHHHHHHHHHHHSSCCCC-------CTTSHHH
T ss_pred hHHHHHHHHHHcCCCchhceE-EEEEeecc----HHHHhheeccCCEECHHHHHHHHHhcCCCCcccccccccccHHHHH
Confidence 3557899999999987 5798 57799 99 88999988 588765543211 00110
Q ss_pred ------------------------HHHHHHHH---hhhHHHH----------------------HhcCCchHHHHHHHHH
Q 015501 309 ------------------------EGFTETIQ---KRGGLLI----------------------KKWGRSSAASTAVSIV 339 (405)
Q Consensus 309 ------------------------~el~~~v~---~~~~~ii----------------------~~~G~~~~~s~A~~i~ 339 (405)
++..+... .++.+++ ...+...+++.|+.++
T Consensus 80 ~~~~~~~~~~~~~p~~Yl~Yy~~~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~av~ii 159 (276)
T d1u8xx2 80 KARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIVDLA 159 (276)
T ss_dssp HHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCCSCSSCCCTTTHHHHHHH
T ss_pred HHhCCcccCCcccchhHHHhccchHHHHHHhccCCCcHHHHHHHHHHHHHHhHHhhcccccchhhcccCCchHHHHHHHH
Confidence 01100000 0111111 1122333466777888
Q ss_pred HHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHHHHHHh
Q 015501 340 DAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 403 (405)
Q Consensus 340 ~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E~~~l~ 403 (405)
++|. +|++.++.++|.++|..-|+|+|+++++||+|+++|+.++-. .+|.+..++.++
T Consensus 160 ~ai~-----~~~~~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~ 217 (276)
T d1u8xx2 160 RAIA-----YNTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV-GTIPQFQKGLME 217 (276)
T ss_dssp HHHH-----HTCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHH
T ss_pred HHHh-----cCCCcEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeeec-CCCcHHHHHHHH
Confidence 7777 688999999999999889999999999999999999998764 788888877665
|
| >d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.66 E-value=1.1e-07 Score=90.51 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCCHHH
Q 015501 335 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYL 398 (405)
Q Consensus 335 A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~~~E 398 (405)
|+.|+++|. +|++.++.++|.++|..-++|+|.++++||+|+++|+.++--...|.+..
T Consensus 184 a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~ 242 (308)
T d1obba2 184 HIPFIDALL-----NDNKARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRV 242 (308)
T ss_dssp HHHHHHHHH-----HCCCEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHH
T ss_pred HHHHHHHHH-----cCCCeEEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHH
Confidence 777877777 68999999999999998999999999999999999999974234676654
|
| >d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Putative alpha-glucosidase TM0752 species: Thermotoga maritima [TaxId: 2336]
Probab=98.56 E-value=8.4e-08 Score=90.00 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCcccCCCCceEEEEeEEEcCCCceeeecCCCCC
Q 015501 329 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFD 395 (405)
Q Consensus 329 ~~~~s~A~~i~~ai~~~~~~~~~~~i~~~sv~~~G~~ygi~~dv~~s~P~~ig~~Gv~~iv~~~~L~ 395 (405)
..++..|+.|+++|. +|++.++.++|.++|..-++|+|+++++||+|+++|+.++--+..+.
T Consensus 149 ~~~~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~vg~~~p 210 (278)
T d1vjta2 149 KLSGEQHIPFINAIA-----NNKRVRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREKVEPDLT 210 (278)
T ss_dssp CCCCCSHHHHHHHHH-----HCCCEEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECCCCSCCC
T ss_pred cchHHHHHHHHHHHh-----CCCCeEEEEECCCCCcCCCCCchhheEeEEEEeCCceeeeecCCCCh
Confidence 334567888988888 68999999999999988899999999999999999999874332344
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=9.3e-08 Score=84.86 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=71.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh-------cC------------CCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-------LF------------PLL 157 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~-------~~------------~~~ 157 (405)
.||+|||| |.+|+.+|..++..|+ ++.| +|++++.++.....++.. .. ...
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~-----~V~l----~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 74 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGH-----TVVL----VDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 74 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCC-----cEEE----EECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHH
Confidence 59999995 9999999999999876 4555 344444433221111111 00 011
Q ss_pred ceEEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 158 ~~v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.++..+++..++++|||+|+-+.. +|.++-+++...+.+++.+++++ .||-.
T Consensus 75 ~~i~~~~d~~~a~~~ad~ViEav~--------------E~l~~K~~v~~~l~~~~~~~~il--asnTS 126 (192)
T d1f0ya2 75 STIATSTDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTS 126 (192)
T ss_dssp HTEEEESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCS
T ss_pred hhccccchhHhhhcccceehhhcc--------------cchhHHHHHHHHHhhhcccCcee--eccCc
Confidence 357778888899999999998732 35788899999999998777766 77754
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.38 E-value=2.4e-07 Score=81.62 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=78.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHH---HHH-hhhhcC--C--------Ccce
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AME-LEDSLF--P--------LLRE 159 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~---a~D-L~d~~~--~--------~~~~ 159 (405)
++..||+|||| |.||+.+|..++..|+ ++.+ +|++++.++.. +.+ +.+... . ....
T Consensus 2 ~~I~~vaViGa-G~mG~~iA~~~a~~G~-----~V~l----~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 71 (186)
T d1wdka3 2 KDVKQAAVLGA-GIMGGGIAYQSASKGT-----PILM----KDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNG 71 (186)
T ss_dssp CCCSSEEEECC-HHHHHHHHHHHHHTTC-----CEEE----ECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhce
Confidence 45679999995 9999999999999876 4665 34554443321 111 111110 0 1124
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCC
Q 015501 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI 239 (405)
Q Consensus 160 v~i~~~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~ 239 (405)
+..+ .+++++.+||+||-+.. +|.++-+++-+.|.+++.+++++ +||-......-+.... ..
T Consensus 72 i~~~-~~~~~~~~adlViEav~--------------E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~l~i~~la~~~-~~ 133 (186)
T d1wdka3 72 IRPT-LSYGDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTISISLLAKAL-KR 133 (186)
T ss_dssp EEEE-SSSTTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCHHHHGGGC-SC
T ss_pred eecc-cccccccccceeeeeec--------------chHHHHHHHHHHHHhhcCCCeeE--EeccccccHHHHHHhc-cC
Confidence 5554 46788999999998632 25788889999999999777776 7775543333333333 23
Q ss_pred CCCceee
Q 015501 240 PAKNFHA 246 (405)
Q Consensus 240 ~~k~ig~ 246 (405)
|.|.+|+
T Consensus 134 p~r~~g~ 140 (186)
T d1wdka3 134 PENFVGM 140 (186)
T ss_dssp GGGEEEE
T ss_pred chheEee
Confidence 3455543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.33 E-value=3.5e-06 Score=71.83 Aligned_cols=93 Identities=24% Similarity=0.180 Sum_probs=62.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|.+|+.+|..|...+. +|.. +|++++.++ .+.++. . +....++.+++++||+|
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~-----~V~~----~d~~~~~~~-~a~~~~-----~---~~~~~~~~~~~~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGH-----YLIG----VSRQQSTCE-KAVERQ-----L---VDEAGQDLSLLQTAKII 61 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHH-HHHHTT-----S---CSEEESCGGGGTTCSEE
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-----EEEE----EECCchHHH-HHHHhh-----c---cceeeeecccccccccc
Confidence 7999999 59999999999998764 3443 566656554 222211 1 11123567899999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
|++. | ...+.++.+.+..+.+++.+|+.+++-
T Consensus 62 ilav--p--------------~~~~~~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 62 FLCT--P--------------IQLILPTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp EECS--C--------------HHHHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred cccC--c--------------Hhhhhhhhhhhhhhcccccceeecccc
Confidence 9873 2 244556666666665577788777654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.22 E-value=1.8e-06 Score=74.17 Aligned_cols=102 Identities=14% Similarity=-0.001 Sum_probs=65.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc-CCC----cceEEEecCcccccC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPL----LREVKIGINPYELFE 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~-~~~----~~~v~i~~~~~eal~ 171 (405)
+||+|||| |.+|..+|..|++.|. ++.+ +|+++++++.....-.... .+. .....++++..|+++
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 71 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQ-----SVLA----WDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK 71 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc
Confidence 69999995 9999999999999875 3555 4666666554332110001 011 012345667889999
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+||+||++... .-..++.++++.+.+++.+|+...|.
T Consensus 72 ~aD~iii~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 72 DADVILIVVPA----------------IHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp TCSEEEECSCG----------------GGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred CCCEEEEEEch----------------hHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 99999987321 22455666777776667776665554
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.08 E-value=3e-06 Score=74.63 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=53.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcC----CCcceEEEecCccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYE 168 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~----~~~~~v~i~~~~~e 168 (405)
+..|.||+|||| |..|+++|..|...+. ++.| .+++++.++.....=.+..+ .+..++.++.+..+
T Consensus 4 ~~~m~KI~ViGa-G~wGtAlA~~La~~g~-----~V~l----~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~ 73 (189)
T d1n1ea2 4 LLYLNKAVVFGS-GAFGTALAMVLSKKCR-----EVCV----WHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEK 73 (189)
T ss_dssp CCCEEEEEEECC-SHHHHHHHHHHHTTEE-----EEEE----ECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHH
T ss_pred cceeceEEEECC-CHHHHHHHHHHHHcCC-----eEEE----EEecHHHHHHHhhcccccccccccccccccccchhhhh
Confidence 345789999995 9999999999998764 4665 34555555433221111110 12357888888899
Q ss_pred ccCCCcEEEEe
Q 015501 169 LFEDAEWALLI 179 (405)
Q Consensus 169 al~dADiVIi~ 179 (405)
++++||+||++
T Consensus 74 a~~~ad~iiia 84 (189)
T d1n1ea2 74 AYNGAEIILFV 84 (189)
T ss_dssp HHTTCSCEEEC
T ss_pred ccCCCCEEEEc
Confidence 99999999987
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.99 E-value=6.4e-06 Score=71.65 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=61.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC--Cc-ceEEEecCcccccCCC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LL-REVKIGINPYELFEDA 173 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~--~~-~~v~i~~~~~eal~dA 173 (405)
|||+|||| |..|+++|..|+..+. ++.|+ ..+.+++..+.....-.+..+. .. .++..+.+..+++++|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~-----~V~l~--~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a 72 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGN-----EVRIW--GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA 72 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-----EEEEE--CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE--EecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc
Confidence 79999995 9999999999998763 35552 2333333333222111111111 11 2455566778899999
Q ss_pred cEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 174 DiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|+||++. | ...++++.+.+..+- ++..+++.+
T Consensus 73 d~Ii~av--p--------------s~~~~~~~~~l~~~l-~~~~ii~~t 104 (180)
T d1txga2 73 EVVLLGV--S--------------TDGVLPVMSRILPYL-KDQYIVLIS 104 (180)
T ss_dssp SEEEECS--C--------------GGGHHHHHHHHTTTC-CSCEEEECC
T ss_pred chhhccc--c--------------hhhhHHHHHhhcccc-ccceecccc
Confidence 9999873 2 244566677777775 445555554
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.93 E-value=2e-05 Score=69.49 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=68.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH-----------HhhhhcCCCcceEEEecC
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-----------ELEDSLFPLLREVKIGIN 165 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~-----------DL~d~~~~~~~~v~i~~~ 165 (405)
|||+||| +|+||..+|..|+..|. ++.. +|.+.++.+..-. ++.... ....+...+++
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~-----~V~g----~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~-~~~~~~~~~~~ 69 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGH-----EVIG----VDVSSTKIDLINQGKSPIVEPGLEALLQQG-RQTGRLSGTTD 69 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHTTCCSSCCTTHHHHHHHH-HHTTCEEEESC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCC-----cEEE----EeCCHHHHHHhcccCCcccchhhhhhhhhh-hcccccccCCC
Confidence 7999999 59999999999998775 2433 4555555443321 000000 01135677788
Q ss_pred cccccCCCcEEEEeCCcCCCCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHH
Q 015501 166 PYELFEDAEWALLIGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTN 228 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~k~g-~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~ 228 (405)
..+++++||+++++.+.|.... ......+ ..+..++.+.++.. .++..||+-+ -|..+.
T Consensus 70 ~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~-~~~~liii~STv~pGtt 130 (202)
T d1mv8a2 70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREK-SERHTVVVRSTVLPGTV 130 (202)
T ss_dssp HHHHHHTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTC-CSCCEEEECSCCCTTHH
T ss_pred HHHHHhhCCEEEEecCccccccccccchhh---hhhhhhhhheeecc-cCCcceeeccccCCcch
Confidence 8899999999999877664322 2111111 23444455545554 3566655544 454443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.86 E-value=0.00011 Score=62.18 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+||| .|.+|+++|..|...+... .|. .+|++++.++ .+.++.- .....+........++|+
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~---~I~----~~D~~~~~~~-~a~~~~~------~~~~~~~~~~~~~~~~dl 65 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKG---KIY----GYDINPESIS-KAVDLGI------IDEGTTSIAKVEDFSPDF 65 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCS---EEE----EECSCHHHHH-HHHHTTS------CSEEESCGGGGGGTCCSE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCe---EEE----EEECChHHHH-HHHHhhc------chhhhhhhhhhhcccccc
Confidence 56899999 5999999999999887521 233 2577666554 3332211 112222334456678999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~ 228 (405)
||++.- .+.+.++.+.+..+.+++.+|+-++.--..+
T Consensus 66 Iila~p----------------~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~ 102 (171)
T d2g5ca2 66 VMLSSP----------------VRTFREIAKKLSYILSEDATVTDQGSVKGKL 102 (171)
T ss_dssp EEECSC----------------HHHHHHHHHHHHHHSCTTCEEEECCSCCTHH
T ss_pred ccccCC----------------chhhhhhhhhhhccccccccccccccccHHH
Confidence 998732 2345555566666656788888877653333
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=5.3e-06 Score=70.01 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=63.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+|||| |.+|+.++..|...|. ++.+ ++++.+..+.. ...... .......+..+..+++.++|+|
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~D~i 67 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH-----EVQG----WLRVPQPYCSV--NLVETD-GSIFNESLTANDPDFLATSDLL 67 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSCCSEEEE--EEECTT-SCEEEEEEEESCHHHHHTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----ceEE----EEcCHHHhhhh--ccccCC-ccccccccccchhhhhcccceE
Confidence 79999995 9999999999999765 3555 33433322211 000111 1112234456778899999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
|++... .-..+..+.+..+.+++..|+...|=++
T Consensus 68 ii~vka----------------~~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 68 LVTLKA----------------WQVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp EECSCG----------------GGHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred EEeecc----------------cchHHHHHhhccccCcccEEeeccCccc
Confidence 997432 1134455566665557888999888554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.77 E-value=1.6e-05 Score=67.63 Aligned_cols=92 Identities=12% Similarity=0.174 Sum_probs=59.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|+.+|..|+..+. ++.. .|++.++++.... .. ..+..+..|.+++||+|
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~-----~V~~----~d~~~~~~~~~~~----~~------~~~~~~~~e~~~~~d~i 60 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV----SDRNPEAIADVIA----AG------AETASTAKAIAEQCDVI 60 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHH----TT------CEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCC-----eEEE----EeCCcchhHHHHH----hh------hhhcccHHHHHhCCCeE
Confidence 7999999 69999999999999775 2443 5666666554332 11 22345678899999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHH---HHHHhhcCCCeEEEEeCC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQG---KALNAVASRNVKVIVVGN 223 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~---~~i~~~a~p~a~vIvvtN 223 (405)
|++-.. .+.++++. ..+.....++.++|..++
T Consensus 61 i~~v~~---------------~~~v~~v~~~~~~~~~~~~~g~iiid~sT 95 (161)
T d1vpda2 61 ITMLPN---------------SPHVKEVALGENGIIEGAKPGTVLIDMSS 95 (161)
T ss_dssp EECCSS---------------HHHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred EEEcCC---------------HHHHHHHHhCCcchhhccCCCCEEEECCC
Confidence 987321 23444443 233333346666666664
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.66 E-value=3.3e-05 Score=64.95 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||++||+ |++|++++..|+..+. ..+.+ +|++.++++..+.++ .+... ++.++++++|+|
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~----~~i~v----~~r~~~~~~~l~~~~---------~~~~~-~~~~~v~~~Div 61 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGG----YRIYI----ANRGAEKRERLEKEL---------GVETS-ATLPELHSDDVL 61 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCS----CEEEE----ECSSHHHHHHHHHHT---------CCEEE-SSCCCCCTTSEE
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCC----CcEEE----EeCChhHHHHhhhhc---------ccccc-cccccccccceE
Confidence 79999995 9999999999887652 13544 678877776555432 12333 445778999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 62 ~lav 65 (152)
T d1yqga2 62 ILAV 65 (152)
T ss_dssp EECS
T ss_pred EEec
Confidence 9873
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=7.5e-05 Score=62.83 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+|+||+|.||+.+...|+...-+.. ..+.++.......+ ...... . ........+.++++++|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~---~~l~~~~ss~s~g~----~~~~~~---~--~~~~~~~~~~~~~~~~Di 68 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDA---IRPVFFSTSQLGQA----APSFGG---T--TGTLQDAFDLEALKALDI 68 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGG---SEEEEEESSSTTSB----CCGGGT---C--CCBCEETTCHHHHHTCSE
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCe---eEEEEeeccccccc----cccccC---C--ceeeecccchhhhhcCcE
Confidence 67999999999999999988777654432 34544433332111 000100 0 011222345678999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vI 219 (405)
+|++.+ ..+-+++++.+.+. +.+++||
T Consensus 69 vF~a~~----------------~~~s~~~~~~~~~~-g~~~~VI 95 (146)
T d1t4ba1 69 IVTCQG----------------GDYTNEIYPKLRES-GWQGYWI 95 (146)
T ss_dssp EEECSC----------------HHHHHHHHHHHHHT-TCCCEEE
T ss_pred EEEecC----------------chHHHHhhHHHHhc-CCCeecc
Confidence 999854 35666777777664 2344443
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00015 Score=63.25 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-----cCcccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPYEL 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-----~~~~ea 169 (405)
.|+||+|+||+|.+|++++..|+..+. ++.+ +.++.+++... . ....++... .+..++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-----~V~~----~~R~~~~~~~~-------~-~~~~~~~~gD~~d~~~l~~a 64 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGY-----EVTV----LVRDSSRLPSE-------G-PRPAHVVVGDVLQAADVDKT 64 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCGGGSCSS-------S-CCCSEEEESCTTSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE----EEcChhhcccc-------c-ccccccccccccchhhHHHH
Confidence 478999999999999999999998774 3433 34444443211 0 111122221 113478
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
++++|+||.+.|... +. +.. ..+....+.+.+.+++.. --.+|.++
T Consensus 65 l~~~d~vi~~~g~~~-~~-~~~---~~~~~~~~~l~~aa~~~~--v~r~i~~s 110 (205)
T d1hdoa_ 65 VAGQDAVIVLLGTRN-DL-SPT---TVMSEGARNIVAAMKAHG--VDKVVACT 110 (205)
T ss_dssp HTTCSEEEECCCCTT-CC-SCC---CHHHHHHHHHHHHHHHHT--CCEEEEEC
T ss_pred hcCCCEEEEEeccCC-ch-hhh---hhhHHHHHHHHHHHHhcC--CCeEEEEe
Confidence 999999998765421 11 111 123344555666677652 22455554
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.42 E-value=4.2e-05 Score=64.45 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=46.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| +|++|++++..|...+. ++.+ .+++.++++..+..+. +.+..+..+.+++||+|
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~-----~i~v----~~r~~~~~~~l~~~~g---------~~~~~~~~~~~~~~dvI 61 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPH-----ELII----SGSSLERSKEIAEQLA---------LPYAMSHQDLIDQVDLV 61 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSC-----EEEE----ECSSHHHHHHHHHHHT---------CCBCSSHHHHHHTCSEE
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCC-----eEEE----EcChHHhHHhhccccc---------eeeechhhhhhhcccee
Confidence 7999999 59999999999987542 3544 5666676665443321 12335677889999999
Q ss_pred EEeC
Q 015501 177 LLIG 180 (405)
Q Consensus 177 Ii~~ 180 (405)
|++.
T Consensus 62 ilav 65 (152)
T d2ahra2 62 ILGI 65 (152)
T ss_dssp EECS
T ss_pred eeec
Confidence 9874
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.34 E-value=0.00027 Score=59.82 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|+||+||| .|.+|+.+|..|+..+. ++.. +|++.++.+... ... .....+..+.++++|+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~-----~v~~----~d~~~~~~~~~~----~~~------~~~~~~~~e~~~~~di 60 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGY-----LLNV----FDLVQSAVDGLV----AAG------ASAARSARDAVQGADV 60 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHH----HTT------CEECSSHHHHHTSCSE
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCC-----eEEE----EECchhhhhhhh----hhh------ccccchhhhhccccCe
Confidence 67999999 69999999999999875 3444 466655544222 111 1233567899999999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
|+++-
T Consensus 61 ii~~v 65 (162)
T d3cuma2 61 VISML 65 (162)
T ss_dssp EEECC
T ss_pred eeecc
Confidence 98873
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.29 E-value=0.00035 Score=58.68 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=55.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||||+|.+|..+...|....-+. .+.+..+.......+ ..++ ...........+.+.++++|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p---~~~i~~~ss~~~~gk----~~~~-----~~~~~~~~~~~~~~~~~~~Dvv 68 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD---LIEPVFFSTSQIGVP----APNF-----GKDAGMLHDAFDIESLKQLDAV 68 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG---GSEEEEEESSCCSSB----CCCS-----SSCCCBCEETTCHHHHTTCSEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC---ceEEEEecccccccc----cccc-----CCcceeeecccchhhhccccEE
Confidence 799999999999999998777543222 134443333222111 1111 0001122234566789999999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV 220 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIv 220 (405)
+++.. -.+-+++++.+.+. +.+++||-
T Consensus 69 F~alp----------------~~~s~~~~~~l~~~-g~~~~VID 95 (147)
T d1mb4a1 69 ITCQG----------------GSYTEKVYPALRQA-GWKGYWID 95 (147)
T ss_dssp EECSC----------------HHHHHHHHHHHHHT-TCCSEEEE
T ss_pred EEecC----------------chHHHHHhHHHHHc-CCceEEEe
Confidence 99854 25566777777765 35555543
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00013 Score=64.98 Aligned_cols=113 Identities=11% Similarity=0.133 Sum_probs=64.9
Q ss_pred hhhccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-----c
Q 015501 90 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----I 164 (405)
Q Consensus 90 ~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-----~ 164 (405)
++|.+ +||.|+||+|+||++++..|++.+.+.. |.+ +.++........ ... -+..+. .
T Consensus 10 ~~m~~--k~IlItGaTG~iG~~l~~~Ll~~g~~~~---v~~----~~R~~~~~~~~~--~~~------i~~~~~D~~~~~ 72 (232)
T d2bkaa1 10 FRMQN--KSVFILGASGETGRVLLKEILEQGLFSK---VTL----IGRRKLTFDEEA--YKN------VNQEVVDFEKLD 72 (232)
T ss_dssp HHHTC--CEEEEECTTSHHHHHHHHHHHHHTCCSE---EEE----EESSCCCCCSGG--GGG------CEEEECCGGGGG
T ss_pred hCCCC--CEEEEECCCcHHHHHHHHHHHhCCCCCE---EEE----EecChhhhcccc--cce------eeeeeecccccc
Confidence 45555 4999999999999999999998876432 432 223211111000 000 011110 1
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 165 ~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+..++++++|+|+.+++... .......+...|......+++...+. +.+ .++.++
T Consensus 73 ~~~~~~~~~d~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~-~fi~~S 127 (232)
T d2bkaa1 73 DYASAFQGHDVGFCCLGTTR-GKAGAEGFVRVDRDYVLKSAELAKAG-GCK-HFNLLS 127 (232)
T ss_dssp GGGGGGSSCSEEEECCCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHT-TCC-EEEEEC
T ss_pred cccccccccccccccccccc-cccchhhhhhhcccccceeeeccccc-Ccc-ccccCC
Confidence 34578899999998876421 11233344566777777888877764 233 344444
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.10 E-value=0.0015 Score=56.47 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHH--------HhhhhcCCCcceEEEecCccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLFPLLREVKIGINPYE 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~--------DL~d~~~~~~~~v~i~~~~~e 168 (405)
|||+||| .|.||..+|..++ .+. ++.. +|.++++++..-. ++++.......+.+..++..+
T Consensus 1 MkI~ViG-lG~vGl~~a~~~a-~g~-----~V~g----~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~ 69 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLLS-LQN-----EVTI----VDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA 69 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHHT-TTS-----EEEE----ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred CEEEEEC-CChhHHHHHHHHH-CCC-----cEEE----EECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhh
Confidence 7999999 5999999997664 343 2432 4555555443221 111111011124556667788
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-chhHHHHHH
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PCNTNALIC 232 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN-P~d~~t~~~ 232 (405)
+..++|+++++-..|.....+-. ....+....+.+... +++..+++-+. |....-.+.
T Consensus 70 ~~~~~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~-~~~~~iii~Stv~pgt~~~~~ 128 (196)
T d1dlja2 70 AYKEAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMR 128 (196)
T ss_dssp HHHHCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHHHH
T ss_pred hhhccccccccCCccccccCCCc-----ceeEEeehhhhhhhc-ccceeEEeeeecCceeeeeee
Confidence 89999999887443321111111 123444445555555 35555555553 444443433
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.00 E-value=0.00098 Score=55.41 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=40.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
|||+||| .|.+|+.++..|.+.+. ++.. .++......... .+.. . +.....|++++||+|
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~-----~v~~----~~~~~~~~~~~~---~~~~-~------~~~~~~e~~~~~diI 60 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGV-----EVVT----SLEGRSPSTIER---ARTV-G------VTETSEEDVYSCPVV 60 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-----EEEE----CCTTCCHHHHHH---HHHH-T------CEECCHHHHHTSSEE
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCC-----eEEE----EcCchhHHHHHh---hhcc-c------ccccHHHHHhhcCeE
Confidence 7999999 59999999999999875 2433 233322222111 1111 1 112356889999999
Q ss_pred EEe
Q 015501 177 LLI 179 (405)
Q Consensus 177 Ii~ 179 (405)
|++
T Consensus 61 i~~ 63 (152)
T d1i36a2 61 ISA 63 (152)
T ss_dssp EEC
T ss_pred EEE
Confidence 987
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0015 Score=60.35 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=65.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccCCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~dAD 174 (405)
+||.|+||+|+||++++..|+..+. +.+.++.. .....+.+ .+.. .. .++.+. ......+.++|
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~----~V~~~d~~-~~~~~~~~-------~~~~-~~-~~~d~~~~~~~~~~~~~~d 67 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGH----EVTVVDNF-FTGRKRNV-------EHWI-GH-ENFELINHDVVEPLYIEVD 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEECC-SSCCGGGT-------GGGT-TC-TTEEEEECCTTSCCCCCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC----EEEEEeCC-CcCCHHHH-------HHhc-CC-CceEEEehHHHHHHHcCCC
Confidence 5999999999999999999998764 12232111 11111111 1111 11 123332 23456677999
Q ss_pred EEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 175 iVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+||.+|+...-+ ..+..+.+..|+.....+.+.+++.. .++|.++
T Consensus 68 ~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~---~k~I~~S 114 (312)
T d2b69a1 68 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG---ARLLLAS 114 (312)
T ss_dssp EEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT---CEEEEEE
T ss_pred EEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEEE
Confidence 999887643211 12344567889999999999888862 3555543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0007 Score=63.18 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=62.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEE-EeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--cc----c
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIAL-KLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L-~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~~----e 168 (405)
|||.|+||+|+||++++..|+..+. +|.+ +.+... ..+.+. . +++.... ++.+ ..| ++ +
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~-----~V~~~d~~~~~-~~~~~~-~---~~~~~~~---~~~~~~~Dl~d~~~l~~ 67 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVIILDNLCNS-KRSVLP-V---IERLGGK---HPTFVEGDIRNEALMTE 67 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSC-CTTHHH-H---HHHHHTS---CCEEEECCTTCHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEEEECCCCc-chhhHH-H---HHhhcCC---CCEEEEeecCCHHHHHH
Confidence 7999999999999999999998774 2432 111111 111111 1 1111101 1111 111 22 3
Q ss_pred ccC--CCcEEEEeCCcCCCCCC---chhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 015501 169 LFE--DAEWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (405)
Q Consensus 169 al~--dADiVIi~~g~~~k~g~---~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vI 219 (405)
.++ ++|+||.+|+.+. .+. +....+..|+.-...+.+.++++ +..-+|.
T Consensus 68 ~~~~~~~d~ViHlAa~~~-~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i~ 121 (338)
T d1udca_ 68 ILHDHAIDTVIHFAGLKA-VGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIF 121 (338)
T ss_dssp HHHHTTCSEEEECCSCCC-HHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEE
T ss_pred HHhccCCCEEEECCCccc-hhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCCEEEe
Confidence 445 6899998876432 111 23466788999999999999886 3443333
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=96.97 E-value=0.0057 Score=56.83 Aligned_cols=106 Identities=17% Similarity=0.062 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec------Cccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------NPYE 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~------~~~e 168 (405)
+-.||.|+||+|+||++++..|++.|. +|.. + .++.++...... +.+..........+.. ...+
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~-----~V~~-~---vR~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~ 79 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGY-----KVRG-T---ARSASKLANLQK-RWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE-E---ESSHHHHHHHHH-HHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE-E---eCCchhHHHHHH-hhhccccccccEEEeccccchhhhhh
Confidence 347999999999999999999999875 2321 1 223333322211 1111111111111212 2346
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
++.++|.|+..++.. ....+.......|..-...+.+.+.+.
T Consensus 80 ~~~~~~~v~~~a~~~-~~~~~~~~~~~~nv~gt~~ll~~~~~~ 121 (342)
T d1y1pa1 80 VIKGAAGVAHIASVV-SFSNKYDEVVTPAIGGTLNALRAAAAT 121 (342)
T ss_dssp TTTTCSEEEECCCCC-SCCSCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcccchhhhhhcccc-cccccccccccchhhhHHHHHHhhhcc
Confidence 889999999876532 233334445566777778888888775
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.95 E-value=0.0019 Score=53.36 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.|+||+|||+.|.+|..++..|...|+
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~ 34 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGY 34 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCC
Confidence 578999999669999999999998876
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.89 E-value=0.0013 Score=54.62 Aligned_cols=73 Identities=23% Similarity=0.230 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
++|||+|+||+|.+|..++..|.+... .. +.|.++....+..+ . +. ....+..+...+.+.+.++|
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~h-P~---~~l~~~~s~~~~Gk----~--i~----~~~~~~~~~~~~~~~~~~~d 66 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDF-PL---HRLHLLASAESAGQ----R--MG----FAESSLRVGDVDSFDFSSVG 66 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTC-CC---SCEEEEECTTTTTC----E--EE----ETTEEEECEEGGGCCGGGCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC-Cc---eEEEEEeecccCCc----c--ee----eccccchhccchhhhhccce
Confidence 368999999999999999998875432 11 23333333332111 1 11 11123444445667889999
Q ss_pred EEEEeCC
Q 015501 175 WALLIGA 181 (405)
Q Consensus 175 iVIi~~g 181 (405)
+++++.+
T Consensus 67 ~vf~a~p 73 (144)
T d2hjsa1 67 LAFFAAA 73 (144)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9998754
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.87 E-value=0.0033 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVL 122 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~ 122 (405)
|+||+|+||+|.+|..+...|...+-+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ 27 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHM 27 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCC
Confidence 899999999999999999999887553
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.79 E-value=0.00043 Score=60.21 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||.|+||+|++|++++..|+..+... .+.. ..+.... +..... ....+ +.........+.|.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~-----~v~~--~~r~~~~------~~~~~~-~~~~d--~~~~~~~~~~~~d~ 65 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLA-----KVIA--PARKALA------EHPRLD-NPVGP--LAELLPQLDGSIDT 65 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCC-----EEEC--CBSSCCC------CCTTEE-CCBSC--HHHHGGGCCSCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeE-----EEEE--EeCCchh------hccccc-ccccc--hhhhhhccccchhe
Confidence 6799999999999999999999887531 1211 1111100 000000 00000 00011233446799
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|+.+.|...........+...|......+++..++. .--.++.++
T Consensus 66 vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~v~~~i~~S 110 (212)
T d2a35a1 66 AFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM--GARHYLVVS 110 (212)
T ss_dssp EEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred eeeeeeeeccccccccccccchhhhhhhcccccccc--ccccccccc
Confidence 998766432222233445566777777777777764 223455555
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.73 E-value=0.00079 Score=56.36 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=38.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~ 153 (405)
|||+||||+|.+|.++|..|+..|. +|.+ .++++++++..+.++....
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~-----~V~l----~~R~~e~~~~l~~~i~~~~ 48 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH-----EIVV----GSRREEKAEAKAAEYRRIA 48 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE----EESSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC
Confidence 7999996679999999999999875 4665 5778888888877776554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.70 E-value=0.001 Score=56.76 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=61.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
.+|+||| .|.||+.+|..|+..++ .+.. .|++.++++....+-.... .. .......+..+.+.++|.+
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~-----~V~v----~dr~~~~~~~l~~~~~~~~-~~-~~a~~~~~~~~~~~~~~~i 70 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGF-----VVCA----FNRTVSKVDDFLANEAKGT-KV-LGAHSLEEMVSKLKKPRRI 70 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECSSTHHHHHHHHTTTTTS-SC-EECSSHHHHHHHBCSSCEE
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCC-----eEEE----EcCCHHHHHHHHHhccccc-cc-cchhhhhhhhhhhcccceE
Confidence 4799999 69999999999999875 3544 5777677664433211100 00 0001112345788899999
Q ss_pred EEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 177 Ii~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++... .+.+.++...+.....++.++|..|+
T Consensus 71 i~~~~~---------------~~~v~~v~~~l~~~~~~g~iiid~sT 102 (176)
T d2pgda2 71 ILLVKA---------------GQAVDNFIEKLVPLLDIGDIIIDGGN 102 (176)
T ss_dssp EECSCT---------------THHHHHHHHHHHHHCCTTCEEEECSC
T ss_pred EEecCc---------------hHHHHHHHHHHHhccccCcEEEecCc
Confidence 886321 24445555566666556677777764
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.60 E-value=0.0014 Score=55.37 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..||.|||| |.+|..++..|...+. ..+.+ .+++.++++..+.++... +....+..+.+.++|
T Consensus 23 ~~~~ilviGa-G~~g~~v~~~L~~~g~----~~i~v----~nRt~~ka~~l~~~~~~~-------~~~~~~~~~~l~~~D 86 (159)
T d1gpja2 23 HDKTVLVVGA-GEMGKTVAKSLVDRGV----RAVLV----ANRTYERAVELARDLGGE-------AVRFDELVDHLARSD 86 (159)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCC----SEEEE----ECSSHHHHHHHHHHHTCE-------ECCGGGHHHHHHTCS
T ss_pred ccCeEEEECC-CHHHHHHHHHHHhcCC----cEEEE----EcCcHHHHHHHHHhhhcc-------cccchhHHHHhccCC
Confidence 4689999995 9999999999998775 23554 678777777676654321 112245678899999
Q ss_pred EEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhc-CCCeEEEEeCCchhH
Q 015501 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCNT 227 (405)
Q Consensus 175 iVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a-~p~a~vIvvtNP~d~ 227 (405)
+||.+-+.+. |-.++ +.++. .++.-. +...++|-++.|-|+
T Consensus 87 ivi~atss~~-~ii~~--------~~i~~---~~~~r~~~~~~~iiDlavPr~v 128 (159)
T d1gpja2 87 VVVSATAAPH-PVIHV--------DDVRE---ALRKRDRRSPILIIDIANPRDV 128 (159)
T ss_dssp EEEECCSSSS-CCBCH--------HHHHH---HHHHCSSCCCEEEEECCSSCSB
T ss_pred EEEEecCCCC-ccccH--------hhhHH---HHHhcccCCCeEEEeecCCCCc
Confidence 9998754331 11121 22222 222211 133578888999654
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.55 E-value=0.0012 Score=61.09 Aligned_cols=189 Identities=14% Similarity=0.143 Sum_probs=95.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccC--CCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c------Ccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVL--GPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPY 167 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~--~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~------~~~ 167 (405)
|||.|+||+|+||++++..|++.+.- ..+.-+.++.+........+ ..+. . ..++.+. . ...
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~----~~~~-~----~~~~~~~~~d~~~~~~~~ 71 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL----APVD-A----DPRLRFVHGDIRDAGLLA 71 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG----GGGT-T----CTTEEEEECCTTCHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHh----hhhh-c----CCCeEEEEeccccchhhh
Confidence 69999999999999999999987752 21111122111111111111 1111 0 0122221 1 123
Q ss_pred cccCCCcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH---HHHHHCCCCCCC
Q 015501 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL---ICLKNAPSIPAK 242 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~---~~~k~s~~~~~k 242 (405)
....+.|+|+..++.+.... ......+..|+.....+.+.+.++. . .++|..+.-.-.-.. -+.+.++..|.-
T Consensus 72 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~-~-~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~~ 149 (322)
T d1r6da_ 72 RELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-V-GRVVHVSTNQVYGSIDSGSWTESSPLEPNS 149 (322)
T ss_dssp HHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEEEEGGGGCCCSSSCBCTTSCCCCCS
T ss_pred ccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcC-C-ceEEEeecceeecCCCCCCCCCCCCCCCCC
Confidence 56789999998876432111 1233456788999999999988863 3 345544432100000 000111111111
Q ss_pred ceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEee--cCCCcccccccceEcCcch
Q 015501 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN--HSTTQVPDFLNARINGLPV 297 (405)
Q Consensus 243 ~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~--HG~~~vp~~S~a~I~G~p~ 297 (405)
..| .+-+-.-.+-..+++..|++..-++-..|.|. +++..+|.|-..-+.|.++
T Consensus 150 ~Y~-~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i 205 (322)
T d1r6da_ 150 PYA-ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTL 205 (322)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCE
T ss_pred HHH-HHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCc
Confidence 111 11112223444456677888888876678884 3345666665444455554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.50 E-value=0.0076 Score=48.47 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=56.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--C----ccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~eal 170 (405)
|||.|+|+ |.+|..++..|...+. ++.+ +|.++++++....++ + ..+..+. + ....+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~-----~v~v----id~d~~~~~~~~~~~-~------~~vi~Gd~~~~~~l~~~~i 63 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGH-----DIVL----IDIDKDICKKASAEI-D------ALVINGDCTKIKTLEDAGI 63 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHC-S------SEEEESCTTSHHHHHHTTT
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----Ccce----ecCChhhhhhhhhhh-h------hhhccCcccchhhhhhcCh
Confidence 79999995 9999999999998764 3544 566777766443322 1 1122211 1 12457
Q ss_pred CCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 171 ~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
++||.++.+-.. -..|+ ++..+ .+.+ +++-++..+.||..
T Consensus 64 ~~a~~vv~~t~~-----------d~~N~-~~~~~---~k~~-~~~~iI~~~~~~~~ 103 (132)
T d1lssa_ 64 EDADMYIAVTGK-----------EEVNL-MSSLL---AKSY-GINKTIARISEIEY 103 (132)
T ss_dssp TTCSEEEECCSC-----------HHHHH-HHHHH---HHHT-TCCCEEEECSSTTH
T ss_pred hhhhhhcccCCc-----------HHHHH-HHHHH---HHHc-CCceEEEEecCHHH
Confidence 899988875321 03343 22223 3445 36656666666643
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.44 E-value=0.017 Score=48.60 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=33.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHH
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~D 148 (405)
|||+||| .|.+|+.++..|+..+. ++.. +|+++++++....+
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~-----~V~~----~dr~~~~~~~l~~~ 43 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGF-----KVAV----FNRTYSKSEEFMKA 43 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----ECSSHHHHHHHHHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCC-----eEEE----EECCHHHHHHHHHc
Confidence 7999999 69999999999999875 3544 57777777655543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.42 E-value=0.0011 Score=62.32 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=61.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-----cCccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPYE 168 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-----~~~~e 168 (405)
.+.|||.|+||+|+||++++..|++.+. .|.. +|...+. .. ..++. ..++... ....+
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-----~V~~--~d~~~~~-~~---~~~~~------~~~~~~~D~~~~~~~~~ 75 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGH-----YVIA--SDWKKNE-HM---TEDMF------CDEFHLVDLRVMENCLK 75 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EESSCCS-SS---CGGGT------CSEEEECCTTSHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--EeCCCcc-ch---hhhcc------cCcEEEeechhHHHHHH
Confidence 3568999999999999999999999774 2322 1111111 00 00000 0112111 12335
Q ss_pred ccCCCcEEEEeCCcCCCC---CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 169 LFEDAEWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~---g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+++.|.||.+++..... ...-......|......+...+.+.. - -.+|..+
T Consensus 76 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~-v-k~~i~~S 130 (363)
T d2c5aa1 76 VTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-I-KRFFYAS 130 (363)
T ss_dssp HHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-C-SEEEEEE
T ss_pred HhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhhC-c-ccccccc
Confidence 678999999876532111 11223345667777888888877752 2 2455444
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.40 E-value=0.0028 Score=54.57 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEe--cCcccccC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIG--INPYELFE 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~--~~~~eal~ 171 (405)
+-++|.|+||+|.||..++..|++.|. .+.+ .+++.++++..+.++.... ... ....+. ....+.+.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGA-----EVVL----CGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhcc-----chhh----cccchHHHHHHHHHHHhcc-chhhhhhhcccHHHHHHHhc
Confidence 458999999999999999999999875 2554 5777777776666654432 111 112222 23456788
Q ss_pred CCcEEEEeCCc
Q 015501 172 DAEWALLIGAK 182 (405)
Q Consensus 172 dADiVIi~~g~ 182 (405)
++|++|.++|.
T Consensus 92 ~iDilin~Ag~ 102 (191)
T d1luaa1 92 GAHFVFTAGAI 102 (191)
T ss_dssp TCSEEEECCCT
T ss_pred CcCeeeecCcc
Confidence 99999988764
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.34 E-value=0.0081 Score=49.80 Aligned_cols=88 Identities=15% Similarity=0.032 Sum_probs=51.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEE
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVI 177 (405)
||++|| .|.||+.++..|+..+. ... .+++.++......+ .. . .....+.+.++|++|
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~------~~~----~~~~~~~~~~~~~~---~~-~-------~~~~~~~~~~~~~~i 59 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFP------TLV----WNRTFEKALRHQEE---FG-S-------EAVPLERVAEARVIF 59 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSC------EEE----ECSSTHHHHHHHHH---HC-C-------EECCGGGGGGCSEEE
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCC------EEE----EeCCHHHHHHHHHH---cC-C-------cccccccccceeEEE
Confidence 899999 69999999999997653 222 23333333322221 11 1 124567888999998
Q ss_pred EeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 178 i~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+.... .+.+......+.....++.++|..+
T Consensus 60 ~~~~~---------------~~~v~~~~~~l~~~~~~~~~iid~s 89 (156)
T d2cvza2 60 TCLPT---------------TREVYEVAEALYPYLREGTYWVDAT 89 (156)
T ss_dssp ECCSS---------------HHHHHHHHHHHTTTCCTTEEEEECS
T ss_pred ecccc---------------hhhhhhhhccccccccccccccccc
Confidence 76321 2334444455555544555555544
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0077 Score=56.40 Aligned_cols=112 Identities=8% Similarity=0.021 Sum_probs=60.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-----hhhhHHHHHHHhhhhcCCCcceEEEecC---cc--
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----SLQALEGVAMELEDSLFPLLREVKIGIN---PY-- 167 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-----~~~~l~g~a~DL~d~~~~~~~~v~i~~~---~~-- 167 (405)
++.|+||+|+||++++..|++.+. +|.. +|+ +.++++....+.. ....++.+... ++
T Consensus 3 ~vLITGatGfiGs~lv~~Ll~~g~-----~V~~----~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~ 69 (357)
T d1db3a_ 3 VALITGVTGQDGSYLAEFLLEKGY-----EVHG----IKRRASSFNTERVDHIYQDPH----TCNPKFHLHYGDLSDTSN 69 (357)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECC-------------------------CCEEECCCCSSCHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcC-----EEEE----EECCCcccchhhHHHHHhhhh----hcCCCeEEEEeecCCHHH
Confidence 444999999999999999998764 2322 233 2223322211111 11124444322 22
Q ss_pred --cccCC--CcEEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCC-CeEEEEeC
Q 015501 168 --ELFED--AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVG 222 (405)
Q Consensus 168 --eal~d--ADiVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p-~a~vIvvt 222 (405)
+.+++ .|+|+.+++... ....+.....+-|+.....+.+.+++.+-. ...+|.+|
T Consensus 70 ~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~S 131 (357)
T d1db3a_ 70 LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS 131 (357)
T ss_dssp HHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred HHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 33443 499998876532 222334455677888888888888876422 34566544
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=96.18 E-value=0.0008 Score=62.89 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEecC-------c
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGIN-------P 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~ 166 (405)
.||||.|+||+|+||++++..|+..+. .+.+.. .|. +..... ..+.... ..++..... .
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~-----~v~v~~--~d~~~~~~~~---~~~~~~~---~~~i~~~~~Di~d~~~~ 67 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHP-----DVHVTV--LDKLTYAGNK---ANLEAIL---GDRVELVVGDIADAELV 67 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCT-----TCEEEE--EECCCTTCCG---GGTGGGC---SSSEEEEECCTTCHHHH
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCC-----CeEEEE--EeCCCccccH---HHHHHhh---cCCeEEEEccCCCHHHH
Confidence 489999999999999999999998764 122211 221 000000 0011111 112333221 2
Q ss_pred ccccCCCcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhc
Q 015501 167 YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVA 212 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a 212 (405)
.+++++.|.|+..++...... .+..+.+..|+.....+.....+..
T Consensus 68 ~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~ 115 (346)
T d1oc2a_ 68 DKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD 115 (346)
T ss_dssp HHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcccc
Confidence 356788899887765432221 1234566788888888888888763
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.00095 Score=55.25 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=37.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEEEE
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiVIi 178 (405)
|++|| +|++|++++..|...+.. ..+ ++++.++++..+..+.. ...+..++++.+|+||+
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~~~~-----~~v----~~R~~~~~~~l~~~~~~----------~~~~~~~~~~~~DiVil 61 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDRYEI-----GYI----LSRSIDRARNLAEVYGG----------KAATLEKHPELNGVVFV 61 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC----C-----CCE----ECSSHHHHHHHHHHTCC----------CCCSSCCCCC---CEEE
T ss_pred EEEEe-CcHHHHHHHHHHHhCCCE-----EEE----EeCChhhhcchhhcccc----------cccchhhhhccCcEEEE
Confidence 68999 599999999877553321 123 57777877766543321 11346788999999998
Q ss_pred eC
Q 015501 179 IG 180 (405)
Q Consensus 179 ~~ 180 (405)
+.
T Consensus 62 ~v 63 (153)
T d2i76a2 62 IV 63 (153)
T ss_dssp CS
T ss_pred ec
Confidence 74
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=96.10 E-value=0.0048 Score=56.28 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=62.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c----ccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YEL 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~----~ea 169 (405)
.||.|+||+|+||++++..|++.+. +.+.++.+......+.++ .+... + ++++ ..| + .++
T Consensus 1 ~KILVTGatGfIGs~lv~~Ll~~g~----~V~~id~~~~~~~~~~~~----~~~~~--~---~~~~i~~Di~~~~~l~~~ 67 (338)
T d1orra_ 1 AKLLITGGCGFLGSNLASFALSQGI----DLIVFDNLSRKGATDNLH----WLSSL--G---NFEFVHGDIRNKNDVTRL 67 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEECCCSTTHHHHHH----HHHTT--C---CCEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC----EEEEEECCCcccchhHHH----Hhhcc--C---CcEEEEcccCCHHHHHHH
Confidence 3899999999999999999998875 122322111111111111 11111 1 1222 112 2 334
Q ss_pred cCC--CcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 170 FED--AEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 170 l~d--ADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+++ .|+||.+++....+. .+-......|..-...+.+.+.+.. ..-.|+..|
T Consensus 68 ~~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~i~~sS 123 (338)
T d1orra_ 68 ITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSS 123 (338)
T ss_dssp HHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEE
T ss_pred HHhcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhccc-ccccccccc
Confidence 444 499998876432111 1234566788888889998888863 444444444
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.09 E-value=0.01 Score=55.79 Aligned_cols=117 Identities=16% Similarity=0.088 Sum_probs=61.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceE-EEeccc-c---chhhhHHHHHHHhhhhcC--C--CcceEEEe-cC-
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIA-LKLLGS-E---RSLQALEGVAMELEDSLF--P--LLREVKIG-IN- 165 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~-L~l~~~-d---~~~~~l~g~a~DL~d~~~--~--~~~~v~i~-~~- 165 (405)
|||.|+||+|+||++++..|++.+-. .|. |+.+.. . ...+..+.....+..... . ....+.+. .|
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~----~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 78 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNH----SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDV 78 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC----EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCT
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCC----EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcc
Confidence 59999999999999999999863221 232 211000 0 011122222222322211 1 11223332 22
Q ss_pred -c-------ccccCCCcEEEEeCCcCCCCCC--chhhhHHhhHHHHHHHHHHHHhhcCCCeEE
Q 015501 166 -P-------YELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (405)
Q Consensus 166 -~-------~eal~dADiVIi~~g~~~k~g~--~r~~ll~~N~~i~~~i~~~i~~~a~p~a~v 218 (405)
+ .+..+++|+|+.+|+....+.. ........|......+.....+.. ....+
T Consensus 79 ~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~-~~~~~ 140 (383)
T d1gy8a_ 79 RNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-CDKII 140 (383)
T ss_dssp TCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEE
T ss_pred cCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccC-Ccccc
Confidence 1 1234578999998764321111 222345678888888888888863 44443
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.00064 Score=63.24 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=58.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-c---Cc---c-c
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I---NP---Y-E 168 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~---~~---~-e 168 (405)
|||.|+||+|+||++++..|+..+.. +|. . +|....... ++.+. .++++. . +. . .
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~----~V~--~--ld~~~~~~~----~~~~~-----~~~~~i~~Di~~~~~~~~~ 63 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHY----EVY--G--LDIGSDAIS----RFLNH-----PHFHFVEGDISIHSEWIEY 63 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC----EEE--E--EESCCGGGG----GGTTC-----TTEEEEECCTTTCSHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC----EEE--E--EeCCCcchh----hhccC-----CCeEEEECccCChHHHHHH
Confidence 69999999999999999999887632 232 2 232211111 11110 112221 1 11 2 3
Q ss_pred ccCCCcEEEEeCCcCCCCCC--chhhhHHhhHHHHHHHHHHHHhh
Q 015501 169 LFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~--~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
.++++|+||..++...-++. .-......|......+.+.+.+.
T Consensus 64 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 108 (342)
T d2blla1 64 HVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY 108 (342)
T ss_dssp HHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHhCCCccccccccccccccccCCccccccccccccccccccccc
Confidence 67789999998764321111 12345678888899999988875
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.05 E-value=0.0024 Score=54.97 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=44.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
.+.+||+|+||+|.+|.-++..|...+. +.|..+..+.+..+.-+.+ ....... ..........+.++++
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~------~ei~~l~S~~~aG~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 72 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQ------FRIKVMTADRKAGEQFGSV---FPHLITQ-DLPNLVAVKDADFSNV 72 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSS------EEEEEEECSTTTTSCHHHH---CGGGTTS-CCCCCBCGGGCCGGGC
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCC------ceEEEEeccccCCCccccc---ccccccc-ccccchhhhhhhhccc
Confidence 3468999999999999999999888654 3343333444333222121 1111011 1111122345667899
Q ss_pred cEEEEeC
Q 015501 174 EWALLIG 180 (405)
Q Consensus 174 DiVIi~~ 180 (405)
|+|+++.
T Consensus 73 Dvvf~al 79 (183)
T d2cvoa1 73 DAVFCCL 79 (183)
T ss_dssp SEEEECC
T ss_pred ceeeecc
Confidence 9999863
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.01 E-value=0.0013 Score=56.49 Aligned_cols=160 Identities=17% Similarity=0.134 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe----cCccccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----INPYELF 170 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~----~~~~eal 170 (405)
.|.+|.|+||+|++|++++..|+..+. .+.+.. ..++.+++. ++.... .-+... ....+++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~-----~v~v~~--~~R~~~~~~----~~~~~~----~~~~~d~~~~~~~~~~~ 66 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSD-----KFVAKG--LVRSAQGKE----KIGGEA----DVFIGDITDADSINPAF 66 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTT-----TCEEEE--EESCHHHHH----HTTCCT----TEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-----cEEEEE--EcCCHHHHH----hccCCc----EEEEeeecccccccccc
Confidence 478999999999999999999998774 232222 234433322 222111 001111 1234678
Q ss_pred CCCcEEEEeCCcCC--CC-------CC------chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHH
Q 015501 171 EDAEWALLIGAKPR--GP-------GM------ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235 (405)
Q Consensus 171 ~dADiVIi~~g~~~--k~-------g~------~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~ 235 (405)
+++|.||..++... .+ .. ........|..-.+.+........ .. .....+... . .
T Consensus 67 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~~~-~-------~ 136 (252)
T d2q46a1 67 QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VK-HIVVVGSMG-G-------T 136 (252)
T ss_dssp TTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CS-EEEEEEETT-T-------T
T ss_pred ccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc-cc-ccccccccc-c-------C
Confidence 99999998764321 00 00 111223344444455555555543 22 222222111 0 0
Q ss_pred CCCCCCCceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeec
Q 015501 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279 (405)
Q Consensus 236 s~~~~~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~H 279 (405)
.+..+..............+...+....|++..-++--.++|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~ 180 (252)
T d2q46a1 137 NPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKE 180 (252)
T ss_dssp CTTCGGGGGGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSC
T ss_pred CCCcccccccccchhhhhhhhhhhhhcccccceeecceEEECCC
Confidence 11111222223333344556666667777765555544567765
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.032 Score=49.70 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=73.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c-------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~------- 166 (405)
+.+.|+||++.||..++..|++.|. .|.+ .+++.++++..+.++.+.. + ++.. ..| +
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~-----~V~l----~~r~~~~l~~~~~~~~~~~-~---~~~~~~~Dvs~~~~v~~~ 74 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKS-----KLVL----WDINKHGLEETAAKCKGLG-A---KVHTFVVDCSNREDIYSS 74 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEeeCCCHHHHHHH
Confidence 5677889999999999999999885 3555 6778888888888876432 1 1111 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCCCCC--chh----hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 167 ----YELFEDAEWALLIGAKPRGPGM--ERA----GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 167 ----~eal~dADiVIi~~g~~~k~g~--~r~----~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+.+..-|++|..+|....... ... +.++-| .-..+.+.+.+.+. ..+.||+++-..
T Consensus 75 ~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~--~~G~Iv~isS~~ 145 (244)
T d1yb1a_ 75 AKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASAA 145 (244)
T ss_dssp HHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC
T ss_pred HHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc--CCceEEEeecch
Confidence 2456679999988775432211 111 223333 34566677778774 578888887654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.97 E-value=0.00092 Score=55.84 Aligned_cols=66 Identities=12% Similarity=0.250 Sum_probs=44.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec------Cccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------NPYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~------~~~eal 170 (405)
+||.|||| |.+|+++|..|...+. .|.+ +|++.++++..+..+... ..... ...+.+
T Consensus 3 K~IliiGa-G~~G~~~a~~L~~~g~-----~V~v----~dr~~~~a~~l~~~~~~~-------~~~~~~~~~~~~~~~~i 65 (182)
T d1e5qa1 3 KSVLMLGS-GFVTRPTLDVLTDSGI-----KVTV----ACRTLESAKKLSAGVQHS-------TPISLDVNDDAALDAEV 65 (182)
T ss_dssp CEEEEECC-STTHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHTTCTTE-------EEEECCTTCHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EECChHHHHHHHhccccc-------ccccccccchhhhHhhh
Confidence 69999995 9999999999998875 3655 688878776555433211 11111 123567
Q ss_pred CCCcEEEEe
Q 015501 171 EDAEWALLI 179 (405)
Q Consensus 171 ~dADiVIi~ 179 (405)
...|+++.+
T Consensus 66 ~~~~~~i~~ 74 (182)
T d1e5qa1 66 AKHDLVISL 74 (182)
T ss_dssp TTSSEEEEC
T ss_pred hccceeEee
Confidence 788888765
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.94 E-value=0.032 Score=49.85 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=71.3
Q ss_pred CEE-EEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC---------
Q 015501 97 VNI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (405)
Q Consensus 97 ~KI-~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--------- 165 (405)
+|| .|+||++.||..++..|+..|. .|.+ .++++++++..+.++.+.. . ++. +..|
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~i~~~g-~---~~~~~~~Dv~~~~~v~~ 67 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF-----AVAI----ADYNDATAKAVASEINQAG-G---HAVAVKVDVSDRDQVFA 67 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEeeCCCHHHHHH
Confidence 476 5679999999999999999886 3555 5677888888877776532 1 111 1111
Q ss_pred ----cccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 ----PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 ----~~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+..-|++|..+|... ++- ++.. ..++.|+ ...+...+.+.+. +..+.|++++--
T Consensus 68 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~~g~Iv~isS~ 139 (255)
T d1gega_ 68 AVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE-GHGGKIINACSQ 139 (255)
T ss_dssp HHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhh-ccccccccccch
Confidence 1244668999998877532 221 1221 2344453 3445566666775 367888887744
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.095 Score=46.71 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=73.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC---------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--------- 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--------- 165 (405)
-+.+.|+||++.||.++|..|++.|. .|.+ .+++.++++..+.++.....+ .++.. ..|
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~-----~Vv~----~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~Dls~~~~v~~ 78 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGL-----KVVG----CARTVGNIEELAAECKSAGYP--GTLIPYRCDLSNEEDILS 78 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCS--SEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC--ceEEEEEccCCCHHHHHH
Confidence 35789999999999999999999886 2554 567778888888777754311 12221 111
Q ss_pred ----cccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 ----PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 ----~~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+..-|++|..+|... ++- .+.. ..++.| .-+.+.+.+.+++....++.||+++-.
T Consensus 79 ~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~ 151 (257)
T d1xg5a_ 79 MFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM 151 (257)
T ss_dssp HHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEech
Confidence 1234667899998776532 221 1111 223334 345566777777653346888888644
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.71 E-value=0.051 Score=48.42 Aligned_cols=114 Identities=16% Similarity=0.060 Sum_probs=71.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c-------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~------- 166 (405)
+.+.|+||++.||..++..|+..|. .|.+ .+++++.++..+.++.+.. . ++.. ..| +
T Consensus 11 KvalITGas~GIG~a~a~~la~~Ga-----~V~~----~~r~~~~l~~~~~~l~~~g-~---~~~~~~~Dvt~~~~v~~~ 77 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSVS-----HVIC----ISRTQKSCDSVVDEIKSFG-Y---ESSGYAGDVSKKEEISEV 77 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSS-----EEEE----EESSHHHHHHHHHHHHTTT-C---CEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEccCCCHHHHHHH
Confidence 4566779999999999999998875 2554 5677888888887776532 1 1111 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCC-CC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 167 ----YELFEDAEWALLIGAKPRG-PG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 167 ----~eal~dADiVIi~~g~~~k-~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+.+..-|++|..+|.... +- .+.. ..+..| ..+.+...+.+.+. ..|.||+++--.
T Consensus 78 ~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS~~ 148 (251)
T d2c07a1 78 INKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN--RYGRIINISSIV 148 (251)
T ss_dssp HHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCEEEEEECCTH
T ss_pred HHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC--CCeEEEEECCHH
Confidence 2445689999987765332 21 1111 223344 33456667777774 578888887543
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=95.64 E-value=0.0015 Score=58.52 Aligned_cols=100 Identities=18% Similarity=0.103 Sum_probs=55.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--CCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--dAD 174 (405)
|||.|+||+|+||++++..|...+. .+.+ +....... .|+.+.. ...+.++ +.|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-----~v~~-----~~~~~~~~---~Dl~~~~-----------~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-----LIAL-----DVHSKEFC---GDFSNPK-----------GVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-----EEEE-----CTTCSSSC---CCTTCHH-----------HHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE-----ECCCcccc---CcCCCHH-----------HHHHHHHHcCCC
Confidence 7999999999999999998887653 2332 11111100 1111100 0112222 359
Q ss_pred EEEEeCCcCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 175 iVIi~~g~~~--k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+||.+|+... ............|......+.+..++. +.+++.++.
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~~ss 104 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET---GAWVVHYST 104 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT---TCEEEEEEE
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhcc---ccccccccc
Confidence 9999877432 112233345567777777777777664 345555553
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.62 E-value=0.0031 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+||+|+||+|.+|.-++..|...+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~ 26 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE 26 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC
Confidence 78999999999999999998887554
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.56 E-value=0.01 Score=55.97 Aligned_cols=117 Identities=10% Similarity=0.152 Sum_probs=64.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecc--ccchhh------------hHHHHHHHhhhhcCCCcceEEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQ------------ALEGVAMELEDSLFPLLREVKI 162 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~--~d~~~~------------~l~g~a~DL~d~~~~~~~~v~i 162 (405)
|||.|+||+|+||++++..|++.|. .|.. +| ...... ............. . .++.+
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~-----~V~~--iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~i~~ 71 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNY-----EVCI--VDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-G--KSIEL 71 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-C--CCCEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-----EEEE--EecCCcccccccccccccccccchHHHHHHHHhhc-C--CCcEE
Confidence 7999999999999999999999875 2432 11 000000 0000000011000 0 12222
Q ss_pred ec-C--c----ccccC--CCcEEEEeCCcCCCC--CCc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 163 GI-N--P----YELFE--DAEWALLIGAKPRGP--GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 163 ~~-~--~----~eal~--dADiVIi~~g~~~k~--g~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.. | + .++++ +.|+|+..|+...-+ ..+ -......|+.-...+.+.+.++. ....++..+.-
T Consensus 72 ~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~~i~~ss~ 146 (393)
T d1i24a_ 72 YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLGTM 146 (393)
T ss_dssp EESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEECCG
T ss_pred EEccCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhc-cccceeecccc
Confidence 21 2 1 23344 349999887643211 112 22456778888889999999884 66666666643
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.49 E-value=0.0071 Score=54.45 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec---------C
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------N 165 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~---------~ 165 (405)
+-+++.|+||++.||..++..|+..|. .|.+ .+++.++++..+.++......+ ...++. .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~~~~~--~~Dvt~~~~v~~~~~~ 72 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGA-----RVAI----ADINLEAARATAAEIGPAACAI--ALDVTDQASIDRCVAE 72 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTE-----EEEE----EESCHHHHHHHHHHHCTTEEEE--ECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCceEEE--EeeCCCHHHHHHHHHH
Confidence 346788999999999999999999885 3555 5677788887777764322111 001110 0
Q ss_pred cccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 166 PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 166 ~~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
..+.+..-|++|..+|... ++- ++.. ..++.|+ -+.+..++.+.+. +..+.||+++--.
T Consensus 73 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~-~~~g~Iv~isS~~ 141 (256)
T d1k2wa_ 73 LLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAG-GRGGKIINMASQA 141 (256)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCGG
T ss_pred HHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHh-ccCCccccccchh
Confidence 1233457899999877542 221 1222 2345553 3455666766664 3568888887443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.46 E-value=0.078 Score=47.71 Aligned_cols=115 Identities=10% Similarity=0.095 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~------ 166 (405)
-+++.|+||++.||.+++..|++.|. .|.+ .++++++++..+.++..... ...++.. ..| +
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~i~~~~~-~~~~~~~~~~Dv~~~~~v~~ 73 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGA-----QVTI----TGRNEDRLEETKQQILKAGV-PAEKINAVVADVTEASGQDD 73 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcCC-CCcceEEEEeeCCCHHHHHH
Confidence 36789999999999999999999885 3555 56777888888887765431 1112222 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCCCCC-----Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 -----YELFEDAEWALLIGAKPRGPG-----MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~k~g-----~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+.+..-|++|..+|.....+ ++.. ..+..| ..+.+...+.+.+. ..+.|++++
T Consensus 74 ~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~ii~~s 144 (274)
T d1xhla_ 74 IINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT--KGEIVNVSS 144 (274)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECC
T ss_pred HHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc--ccccccchh
Confidence 223456899999876432111 1111 123334 23556666777663 567777665
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.41 E-value=0.08 Score=47.27 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC---------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--------- 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--------- 165 (405)
-+.+.|+||++.||..++..|+..|. .|.+ .|++++.++..+.++.+.. .++.. ..|
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~ 71 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGT-----AIAL----LDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIG 71 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 46788999999999999999999885 3555 5677788887777776432 11111 111
Q ss_pred ----cccccCCCcEEEEeCCcCC--CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 ----PYELFEDAEWALLIGAKPR--GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 ----~~eal~dADiVIi~~g~~~--k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+..-|++|..+|... .+- ++.. ..++.|+ .+.+...+.+.+. ..+.||+++-.
T Consensus 72 ~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~II~isS~ 143 (260)
T d1zema1 72 TVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTASM 143 (260)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh--cCCCCCeeech
Confidence 1344568999998877532 221 1222 2334443 3455666766663 57888888754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.37 E-value=0.068 Score=47.31 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=69.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe---cCcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---~~~~eal~d 172 (405)
-+++.|+||++.||..++..|+..|. .|.+ .+++++.++..+.++.... .+..+++-. ....+.+..
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~~-~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGA-----KVVA----VTRTNSDLVSLAKECPGIE-PVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHhcCCCe-EEEEeCCCHHHHHHHHHHcCC
Confidence 46888999999999999999999885 3555 4677777776666654322 110000000 012244568
Q ss_pred CcEEEEeCCcCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 173 AEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 173 ADiVIi~~g~~~-k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
-|++|..+|... ++- ++.. ..++.|. .+.+...+.+.+. +..+.+|+++--
T Consensus 75 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~-~~~g~ii~isS~ 135 (242)
T d1cyda_ 75 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR-GVPGSIVNVSSM 135 (242)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred CeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhh-cccCcccccchh
Confidence 899998877543 221 1222 2234443 3445555655443 356788877754
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.35 E-value=0.052 Score=48.40 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~------ 166 (405)
-+.+.|+||++.||..++..|++.|. .|.+ .+++.++++..+.++.+.. +. ++. +..| +
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-g~--~~~~~~~Dv~~~~~v~~ 72 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGC-----SVVV----ASRNLEEASEAAQKLTEKY-GV--ETMAFRCDVSNYEEVKK 72 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-CC--CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHHh-CC--cEEEEEccCCCHHHHHH
Confidence 45788999999999999999999886 3555 4667777777776665432 11 111 1111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCCC--chh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 -----YELFEDAEWALLIGAKPR-GPGM--ERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~-k~g~--~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+.+..-|++|..+|... ++-. +.. ..++.| ..+.+...+.|++. ..+.||+++
T Consensus 73 ~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~i~ 141 (251)
T d1vl8a_ 73 LLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES--DNPSIINIG 141 (251)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC--SSCEEEEEC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--ccccccccc
Confidence 234557899999877532 2221 222 223444 34566667777763 456666665
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.019 Score=51.21 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe---cCcccccC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELFE 171 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---~~~~eal~ 171 (405)
+-+++.|+||++.||..++..|++.|. .|.+ .+++++.++..+.++.... .+..+++-. ....+.+.
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~g 75 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-----RVVA----VSRTQADLDSLVRECPGIE-PVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHhcCCCe-EEEEeCCCHHHHHHHHHHhC
Confidence 346899999999999999999999885 3554 5677788877776654322 110010000 01234667
Q ss_pred CCcEEEEeCCcCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 172 DAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 172 dADiVIi~~g~~~-k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.-|++|..+|... ++- .+.. ..++.|+ .+.+.+.+.+.+. +..+.||+++--
T Consensus 76 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~-~~~g~Ii~isS~ 137 (244)
T d1pr9a_ 76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR-GVPGAIVNVSSQ 137 (244)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred CceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHh-CCcceEeecccc
Confidence 8899998776542 221 1222 2344443 3455666655543 356888887743
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.31 E-value=0.049 Score=43.24 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=41.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--C----ccccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~eal 170 (405)
+++.|+|+ |.+|..++..|...|. ++.+ +|.++++++. +.+.. ..+.++. + ....+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~-----~vvv----id~d~~~~~~----~~~~~----~~~~~gd~~~~~~l~~a~i 62 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGH-----EVLA----VDINEEKVNA----YASYA----THAVIANATEENELLSLGI 62 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-----CCEE----EESCHHHHHH----TTTTC----SEEEECCTTCTTHHHHHTG
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----ecCcHHHHHH----HHHhC----CcceeeecccchhhhccCC
Confidence 47899995 9999999999998875 3554 5666666542 22211 1232321 1 12347
Q ss_pred CCCcEEEEeC
Q 015501 171 EDAEWALLIG 180 (405)
Q Consensus 171 ~dADiVIi~~ 180 (405)
.+||.||++.
T Consensus 63 ~~a~~vi~~~ 72 (134)
T d2hmva1 63 RNFEYVIVAI 72 (134)
T ss_dssp GGCSEEEECC
T ss_pred ccccEEEEEc
Confidence 8899887763
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.28 E-value=0.061 Score=44.39 Aligned_cols=71 Identities=24% Similarity=0.317 Sum_probs=42.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcEE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADiV 176 (405)
-||+|+||+|.+|..+...|...+. . .+.+..+....+. |. .+.+ ............+++.++|++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f-p---~~~l~~~~s~~s~----G~--~~~~----~~~~~~~~~~~~~~~~~~d~~ 67 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASARSA----GK--SLKF----KDQDITIEETTETAFEGVDIA 67 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS-C---EEEEEEEECGGGT----TC--EEEE----TTEEEEEEECCTTTTTTCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC-C---ceEEEEecccccc----cc--cccc----cCCcccccccchhhhhhhhhh
Confidence 3899999999999999988877642 1 1344444333221 11 1111 112233344566788899999
Q ss_pred EEeCC
Q 015501 177 LLIGA 181 (405)
Q Consensus 177 Ii~~g 181 (405)
+++.+
T Consensus 68 f~~~~ 72 (154)
T d2gz1a1 68 LFSAG 72 (154)
T ss_dssp EECSC
T ss_pred hhccC
Confidence 98754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.018 Score=51.39 Aligned_cols=117 Identities=16% Similarity=0.102 Sum_probs=70.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-------cCcccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~ea 169 (405)
+.+.|+||++.||.+++..|++.|. .|.+ .+++++.++..+.++......+..+++-. ....+.
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~-----~Vv~----~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGA-----KVIG----TATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 4677789999999999999999886 2544 56777888877766643221110010000 011234
Q ss_pred cCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 170 FEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 170 l~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+..-|++|..+|... ++- .+.. ..++.| ..+.+...+.|.+. ..+.||+++-.
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~II~isS~ 138 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK--RHGRIITIGSV 138 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc--CCCEeeeecch
Confidence 567999998876532 221 1111 223444 34566677777764 56888888854
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.21 E-value=0.028 Score=50.18 Aligned_cols=119 Identities=14% Similarity=0.030 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-------cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~e 168 (405)
-+.+.|+||++.||..++..|++.|. .|.+ .++++++++..+.++.+....+..+++-. ....+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGA-----KVVF----GDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHH
Confidence 35777889999999999999999886 3555 56777888878777754321110010000 01123
Q ss_pred ccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 LFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 al~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+..-|++|..+|... ++- ++.. ..++.| ..+.+...+.+.+. ..+.||+++-..
T Consensus 77 ~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS~~ 141 (244)
T d1nffa_ 77 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISSIE 141 (244)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc--CcceEEeccccc
Confidence 4567899998877532 221 1222 223444 23455566777774 578888887554
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.15 E-value=0.025 Score=52.27 Aligned_cols=112 Identities=11% Similarity=0.043 Sum_probs=58.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccc-cch-hhhHHHHHHHhhhhcCCCcceEEEecCccc----ccC
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERS-LQALEGVAMELEDSLFPLLREVKIGINPYE----LFE 171 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~-d~~-~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e----al~ 171 (405)
.|.|+||+|+||++++..|+..+. .+.. +|. ... .+... ....+.+.. ..-+..-..+.+ .++
T Consensus 3 ~ILVTGatGfIG~~lv~~Ll~~g~-----~V~~--~d~~~~~~~~~~~-~~~~~~~~~---v~~~~~Dl~d~~~l~~~~~ 71 (347)
T d1z45a2 3 IVLVTGGAGYIGSHTVVELIENGY-----DCVV--ADNLSNSTYDSVA-RLEVLTKHH---IPFYEVDLCDRKGLEKVFK 71 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCSSCCTHHHH-HHHHHHTSC---CCEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcC-----eEEE--EECCCCcchhHHH-hHHhhcccC---CeEEEeecCCHHHHHHHHh
Confidence 588999999999999999999874 2332 111 111 11111 111111111 001111111222 223
Q ss_pred --CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 015501 172 --DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (405)
Q Consensus 172 --dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvv 221 (405)
+.|+||.+|+....+ ..........|......+.+.+++. +....+...
T Consensus 72 ~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~~~i~~S 124 (347)
T d1z45a2 72 EYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSS 124 (347)
T ss_dssp HSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred ccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhc-ccceEEeec
Confidence 689999987753211 1123445667888888888888876 344444333
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.04 Score=46.13 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+.++|.|+|| |..+.++++.|...+. .|.+ .+++.++++..+..+.+.. .+.....+.....++|
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~-----~i~I----~nRt~~ka~~l~~~~~~~~-----~~~~~~~~~~~~~~~d 81 (170)
T d1nyta1 17 PGLRILLIGA-GGASRGVLLPLLSLDC-----AVTI----TNRTVSRAEELAKLFAHTG-----SIQALSMDELEGHEFD 81 (170)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHHHTGGGS-----SEEECCSGGGTTCCCS
T ss_pred CCCEEEEECC-cHHHHHHHHHhcccce-----EEEe----ccchHHHHHHHHHHHhhcc-----cccccccccccccccc
Confidence 4579999995 9999999999998764 2544 6788888877666554322 3333333334456899
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+||.+
T Consensus 82 liIN~ 86 (170)
T d1nyta1 82 LIINA 86 (170)
T ss_dssp EEEEC
T ss_pred eeecc
Confidence 99976
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.99 E-value=0.013 Score=49.73 Aligned_cols=76 Identities=9% Similarity=0.060 Sum_probs=49.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--cCcccccC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFE 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--~~~~eal~ 171 (405)
.++.||.|||| |.+|..-+......|. .+.+ +|.+.++++.+...+... .+.... ....+.++
T Consensus 30 v~pa~V~ViGa-GvaG~~A~~~A~~lGA-----~V~~----~D~~~~~l~~l~~~~~~~-----~~~~~~~~~~l~~~~~ 94 (168)
T d1pjca1 30 VKPGKVVILGG-GVVGTEAAKMAVGLGA-----QVQI----FDINVERLSYLETLFGSR-----VELLYSNSAEIETAVA 94 (168)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGG-----SEEEECCHHHHHHHHH
T ss_pred CCCcEEEEECC-ChHHHHHHHHHhhCCC-----EEEE----EeCcHHHHHHHHHhhccc-----ceeehhhhhhHHHhhc
Confidence 35899999995 9999998888887664 2444 456666665433222111 111111 13468899
Q ss_pred CCcEEEEeCCcCC
Q 015501 172 DAEWALLIGAKPR 184 (405)
Q Consensus 172 dADiVIi~~g~~~ 184 (405)
+||+||-++-.|.
T Consensus 95 ~aDivI~aalipG 107 (168)
T d1pjca1 95 EADLLIGAVLVPG 107 (168)
T ss_dssp TCSEEEECCCCTT
T ss_pred cCcEEEEeeecCC
Confidence 9999998876654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=94.92 E-value=0.031 Score=49.24 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-+++.|+||++.||..++..|++.|. .|.+ .+++++.++....+...+ .+...+ ....+.+..-|+
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~--Dv~~~~---~~~~~~~g~iD~ 69 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGA-----EVTI----CARNEELLKRSGHRYVVC--DLRKDL---DLLFEKVKEVDI 69 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHTCSEEEEC--CTTTCH---HHHHHHSCCCSE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHhcCCcEEEc--chHHHH---HHHHHHhCCCcE
Confidence 46899999999999999999999885 3555 466655554221100000 000000 113466778999
Q ss_pred EEEeCCcCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 176 ALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 176 VIi~~g~~~k~g---~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
+|..+|.+.... ++.. ..++.|. .+.+.+.+.+++. ..+.+|+++.-
T Consensus 70 lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--~~G~ii~i~S~ 126 (234)
T d1o5ia_ 70 LVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK--GWGRIVAITSF 126 (234)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred EEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc--ccccccccccc
Confidence 999887653211 1222 1233443 3566667777764 56777777653
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=94.91 E-value=0.031 Score=47.09 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..+|.|+|| |.++.++++.|..++ . .|.+ .+++.++++..+.++.... ++.....+...+.++|
T Consensus 17 ~~k~vlIlGa-GGaarai~~aL~~~~--~---~i~I----~nR~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~d 81 (171)
T d1p77a1 17 PNQHVLILGA-GGATKGVLLPLLQAQ--Q---NIVL----ANRTFSKTKELAERFQPYG-----NIQAVSMDSIPLQTYD 81 (171)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTT--C---EEEE----EESSHHHHHHHHHHHGGGS-----CEEEEEGGGCCCSCCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHcccC--c---eeee----ccchHHHHHHHHHHHhhcc-----ccchhhhccccccccc
Confidence 4579999995 999999999998743 1 3555 6888888888877665322 3333333445678999
Q ss_pred EEEEeC
Q 015501 175 WALLIG 180 (405)
Q Consensus 175 iVIi~~ 180 (405)
+||.+-
T Consensus 82 iiIN~t 87 (171)
T d1p77a1 82 LVINAT 87 (171)
T ss_dssp EEEECC
T ss_pred eeeecc
Confidence 999873
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.88 E-value=0.16 Score=45.51 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~------ 166 (405)
-+++.|+||++.||..++..|+..|. .|.+ .++++++++..+.++.+.... ..++.. ..| +
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-----~V~l----~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvs~~~~v~~ 74 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGA-----NVTI----TGRSSERLEETRQIILKSGVS-EKQVNSVVADVTTEDGQDQ 74 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTTCC-GGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC-CCceEEEEccCCCHHHHHH
Confidence 35788999999999999999999885 3555 567788888888877654311 122222 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCCC-C-C-----Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 -----YELFEDAEWALLIGAKPRG-P-G-----MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 -----~eal~dADiVIi~~g~~~k-~-g-----~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+.+..-|++|..+|.... + . ++.. ..++.|. ...+...+.+.+. ..++|++.+
T Consensus 75 ~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~~S 147 (272)
T d1xkqa_ 75 IINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--KGEIVNVSS 147 (272)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc--CCccccccc
Confidence 2344578999988775421 1 1 1111 1233443 3456666677663 566666655
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.82 E-value=0.036 Score=49.71 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-------cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~e 168 (405)
-+++.|+||++.||..++..|+..|. .|.+ .+++.++++..+.++......+..+++-. ....+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGA-----RVVL----ADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 46889999999999999999999886 3555 56777777777666643221110000000 00123
Q ss_pred ccCCCcEEEEeCCcCC-CCC--Cc---hhhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 LFEDAEWALLIGAKPR-GPG--ME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 al~dADiVIi~~g~~~-k~g--~~---r~~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+..-|++|..+|... ++- ++ -...++.|. .+.+.+.+.+++. ..+.||+++--.
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~--~~G~II~isS~~ 140 (254)
T d1hdca_ 76 EFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISSAA 140 (254)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc--CCCeecccccch
Confidence 4567899998877532 221 11 112344443 3556666777764 578888888543
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.80 E-value=0.057 Score=49.45 Aligned_cols=177 Identities=12% Similarity=0.051 Sum_probs=86.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C------c
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------P 166 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~------~ 166 (405)
.+++||.|+||+|+||++++..|.+.|. +.+.++... ..+...+........... ..++.+.. + .
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~----~V~~~d~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~d~~~~ 85 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQ----KVVGLDNFA-TGHQRNLDEVRSLVSEKQ---WSNFKFIQGDIRNLDDC 85 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEECCS-SCCHHHHHHHHHHSCHHH---HTTEEEEECCTTSHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC----EEEEEECCC-CcchhhHHHHHHhhhhcc---cCCeeEEeecccccccc
Confidence 3467999999999999999999999875 122332111 111222221111111111 01222221 2 1
Q ss_pred ccccCCCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHH-H-HHHHHCCCCCCC
Q 015501 167 YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA-L-ICLKNAPSIPAK 242 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t-~-~~~k~s~~~~~k 242 (405)
.....+.|.|+..+....-+ ..+.......|+.....+.+.+.+. +...+|..-|.-+---. . -.-+.++.-|.-
T Consensus 86 ~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~ 164 (341)
T d1sb8a_ 86 NNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPGLPKVEDTIGKPLS 164 (341)
T ss_dssp HHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCS
T ss_pred ccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEcccceeeCCCCCCCccCCCCCCCCC
Confidence 24566778888765432211 1233456778888899999988886 34444444332210000 0 000111111111
Q ss_pred ceeecchhhHHHHHHHHHHHhCCCCCCceeEEEEeecC
Q 015501 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS 280 (405)
Q Consensus 243 ~ig~gt~LDs~R~~~~lA~~l~v~~~~V~~~~V~G~HG 280 (405)
..+. +-+..-++-...++..+++..-++-..|+|.++
T Consensus 165 ~Y~~-sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~ 201 (341)
T d1sb8a_ 165 PYAV-TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ 201 (341)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred cchH-HHHHHHHHHHHHHHHhCCCeEEEEeceeeccCc
Confidence 1111 222233444555677788776666434788653
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.18 Score=44.75 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--c-----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P----- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~----- 166 (405)
+-+++.|+||++.||.+++..|+..|. .|.+ .++++++++..+.++.+.. . ++. +..| +
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~~~~~~~~l~~~g-~---~~~~~~~Dvs~~~~~~ 76 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQQLG-G---QAFACRCDITSEQELS 76 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcC-C---cEEEEEccCCCHHHHH
Confidence 457889999999999999999999885 3555 5677788887777776532 1 111 1111 1
Q ss_pred ------ccccCCCcEEEEeCCcCC-CCC-Cchhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 ------YELFEDAEWALLIGAKPR-GPG-MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ------~eal~dADiVIi~~g~~~-k~g-~~r~~---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+..-|++|..+|... ++. ++..+ .+..| ..+.+...+.+.+. ..+.||+++-
T Consensus 77 ~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~Ii~isS 146 (255)
T d1fmca_ 77 ALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN--GGGVILTITS 146 (255)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccc--cccccccccc
Confidence 234568999998877542 222 22222 23444 33456677777775 4677777764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.68 E-value=0.24 Score=43.92 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=70.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--c-------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~------- 166 (405)
+.+.|+||++.||..++..|++.|. .|.+ .+++.++++....++...... .++. +..| +
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~~~~~~~--~~~~~~~~Dvt~~~~v~~~ 73 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGA-----KLSL----VDVSSEGLEASKAAVLETAPD--AEVLTTVADVSDEAQVEAY 73 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHCTT--CCEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhCCC--CeEEEEeccCCCHHHHHHH
Confidence 5788899999999999999999885 3555 567777777776666543311 1222 1111 2
Q ss_pred ----ccccCCCcEEEEeCCcC--CCCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 167 ----YELFEDAEWALLIGAKP--RGPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 167 ----~eal~dADiVIi~~g~~--~k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+.+..-|++|..+|.. ..+- ++.. ..++.| ....+...+.+++. ..+.||+++--
T Consensus 74 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS~ 144 (258)
T d1iy8a_ 74 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTASV 144 (258)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh--cCCCCcccccH
Confidence 23356789999988753 2221 1222 234444 33455556666664 46777777743
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=94.66 E-value=0.017 Score=53.14 Aligned_cols=114 Identities=12% Similarity=-0.009 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC--cc----c
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY----E 168 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--~~----e 168 (405)
+-+||.|+||+|+||++++..|++.|. +|.. .+++........... ... .. -+.. ..| ++ +
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-----~V~~----~~r~~~~~~~~~~~~-~~~-~~-i~~~-~~Dl~d~~~l~~ 73 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-----TVKG----YSLTAPTVPSLFETA-RVA-DG-MQSE-IGDIRDQNKLLE 73 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCSSSSCHHHHT-TTT-TT-SEEE-ECCTTCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCCCccHHHHhhh-hcc-cC-CeEE-EeeccChHhhhh
Confidence 358999999999999999999999875 2432 233322211111111 101 10 0111 112 22 3
Q ss_pred ccC--CCcEEEEeCCcCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 169 LFE--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 169 al~--dADiVIi~~g~~~k~g--~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+++ ..|+|+..++.+.... ..-......|+.....+...+.+.. ....++..+
T Consensus 74 ~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~-~~~~~~~~s 130 (356)
T d1rkxa_ 74 SIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG-GVKAVVNIT 130 (356)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHC-CCCEEEEEC
T ss_pred hhhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhccc-ccccccccc
Confidence 333 4477877765321100 0112345668888888888888874 444444433
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=94.65 E-value=0.13 Score=45.63 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC---------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--------- 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--------- 165 (405)
-+++.|+||++.||..++..|+..|. .|.+ .+++.++++..+.++.... ++.. ..|
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~ 71 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGA-----KVMI----TGRHSDVGEKAAKSVGTPD-----QIQFFQHDSSDEDGWTK 71 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCTT-----TEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCC-----cEEEEEccCCCHHHHHH
Confidence 36788889999999999999999886 3555 4667777877766664211 1211 111
Q ss_pred ----cccccCCCcEEEEeCCcC-CCCC--Cchhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 166 ----PYELFEDAEWALLIGAKP-RGPG--MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 166 ----~~eal~dADiVIi~~g~~-~k~g--~~r~~---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
..+.+..-|++|..+|.. .++- ++..+ .++.| ....+...+.|.+. +..+.||+++--.
T Consensus 72 ~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~-~~gg~Ii~isS~~ 144 (251)
T d1zk4a1 72 LFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK-GLGASIINMSSIE 144 (251)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEEECCGG
T ss_pred HHHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhc-CCCCceEeeeccc
Confidence 124456789999877653 2221 22222 34444 33456666777775 3557888887543
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.65 E-value=0.052 Score=49.00 Aligned_cols=111 Identities=13% Similarity=0.012 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCce-EEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-C--cccccC-
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PYELFE- 171 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i-~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~--~~eal~- 171 (405)
+||.|+||+|+||++++..|+..|. +| .+.......+.++++ ++. ...++.+.. | +.+.+.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~-----~V~~~~r~~~~~~~~~l~----~~~-----~~~~~~~~~~Dl~d~~~~~~ 66 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY-----RVHGLVARRSSDTRWRLR----ELG-----IEGDIQYEDGDMADACSVQR 66 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCCSSCCCHHHH----HTT-----CGGGEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEEEECCCCcccHHHHH----Hhc-----ccCCcEEEEccccChHHhhh
Confidence 4899999999999999999998774 23 221111111112221 111 111233322 1 122221
Q ss_pred -----CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 172 -----DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 172 -----dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
..++++.++...... ..+.......|+.-...+.+.++++ +...+++..|
T Consensus 67 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~-~~~~~~i~~S 123 (321)
T d1rpna_ 67 AVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQAS 123 (321)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred hhccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHh-CCCccccccc
Confidence 355666554432111 1223445677888888888888887 3665665554
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.09 Score=46.40 Aligned_cols=99 Identities=22% Similarity=0.154 Sum_probs=53.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCce-EEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe------cCcccccC
Q 015501 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG------INPYELFE 171 (405)
Q Consensus 99 I~IIGAaG~VGs~la~~L~~~~~~~~d~~i-~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~------~~~~eal~ 171 (405)
|.|+||+|+||++++..|++.|.. +| .++.+. .. .+.. .+.+.. . .+..-. ......+.
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~----~V~~~d~~~--~~-~~~~----~~~~~~--~-~~~~~~~~~~~~~~~~~~~~ 67 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGIT----DILVVDNLK--DG-TKFV----NLVDLN--I-ADYMDKEDFLIQIMAGEEFG 67 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCC----CEEEEECCS--SG-GGGH----HHHTSC--C-SEEEEHHHHHHHHHTTCCCS
T ss_pred EEEecCccHHHHHHHHHHHhCCCC----eEEEEECCC--Cc-chhh----cccccc--h-hhhccchHHHHHHhhhhccc
Confidence 789999999999999999988752 23 332111 11 1111 111110 0 011000 01235667
Q ss_pred CCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 015501 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (405)
Q Consensus 172 dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~ 211 (405)
++++|+..++....+..........|......+.+.....
T Consensus 68 ~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (307)
T d1eq2a_ 68 DVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER 107 (307)
T ss_dssp SCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccccccccccccccccccccccccccccc
Confidence 8888888776544444444445555566666666666654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.43 E-value=0.18 Score=44.79 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~--~------ 166 (405)
-+.+.|+||++.||..++..|+..|. .|.+ .++++++++..+.++.... . ++. +..| +
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~g-~---~~~~~~~Dv~~~~~v~~ 74 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGA-----SVYT----CSRNQKELNDCLTQWRSKG-F---KVEASVCDLSSRSERQE 74 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---EEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---CceEEEeeCCCHHHHHH
Confidence 46788999999999999999999885 3555 5677788887777765432 1 111 1111 1
Q ss_pred -----ccccC-CCcEEEEeCCcCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 167 -----YELFE-DAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 167 -----~eal~-dADiVIi~~g~~~-k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+.+. .-|++|..+|... .+- ++.. ..++.|+ .+.+...+.+.+. ..+.||+++--
T Consensus 75 ~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS~ 146 (259)
T d2ae2a_ 75 LMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS--ERGNVVFISSV 146 (259)
T ss_dssp HHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--SSEEEEEECCG
T ss_pred HHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh--ccccccccccc
Confidence 12334 4799998877543 221 1222 2344553 3445566666663 57888888753
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.38 E-value=0.065 Score=44.71 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
+..||.|+|| |.++.++++.|...+. ..|.+ .+++.++.+..+..+... .+ + .....++|
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~----~~I~I----~nR~~~ka~~L~~~~~~~--------~~--~-~~~~~~~D 75 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGF----EKLKI----YARNVKTGQYLAALYGYA--------YI--N-SLENQQAD 75 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTC----CCEEE----ECSCHHHHHHHHHHHTCE--------EE--S-CCTTCCCS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCC----CEEEE----ecccHHHHHHHHHhhhhh--------hh--h-cccccchh
Confidence 4579999995 9999999999998775 23665 678877777665433211 11 1 12235789
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+||.+
T Consensus 76 liINa 80 (167)
T d1npya1 76 ILVNV 80 (167)
T ss_dssp EEEEC
T ss_pred hheec
Confidence 99876
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.077 Score=47.71 Aligned_cols=99 Identities=22% Similarity=0.244 Sum_probs=54.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
+||.|+||+|+||++++..|++.+.. .+. + + ++. .+.+..... .+.. .-.+.|.
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~----vi~--~-~-~~~~~~~~~~~~~--~~~~---------------~~~~~d~ 57 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDV----ELV--L-R-TRDELNLLDSRAV--HDFF---------------ASERIDQ 57 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTE----EEE--C-C-CTTTCCTTCHHHH--HHHH---------------HHHCCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCE----EEE--e-c-CchhccccCHHHH--HHHH---------------hhcCCCE
Confidence 49999999999999999999987641 122 1 1 111 011111110 0000 0124677
Q ss_pred EEEeCCcCCCC---CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 176 ALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 176 VIi~~g~~~k~---g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
|+..++..... .....+....|+.....+.+.+.++. -. .+|.+|
T Consensus 58 v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-v~-~~i~~S 105 (315)
T d1e6ua_ 58 VYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VN-KLLFLG 105 (315)
T ss_dssp EEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CC-EEEEEC
T ss_pred EEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEEC
Confidence 77765432100 01234556788888888888888752 22 455444
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.017 Score=51.76 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-------ecCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-------~~~~~e 168 (405)
-+.+.|+||++.||.+++..|+..|. .|.+ .|++++.++..+.++.+.. .+..+++- .....+
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~~~~~~-~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGA-----RVVI----CDKDESGGRALEQELPGAV-FILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHCTTEE-EEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHhcCCCe-EEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999885 3555 5677788877766654432 11000000 001234
Q ss_pred ccCCCcEEEEeCCcCCCCC----Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 LFEDAEWALLIGAKPRGPG----MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g----~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+..-|++|..+|....++ .+.. ..++.| ..+.+...+.|++. .+.||+++-..
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~---~G~Ii~isS~~ 140 (250)
T d1ydea1 76 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISSLV 140 (250)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCHH
T ss_pred hcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC---CCCCccccccc
Confidence 4567899998877432222 1222 223444 34566666777663 36777777443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.31 E-value=0.2 Score=44.94 Aligned_cols=76 Identities=9% Similarity=0.058 Sum_probs=50.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC--c--------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P-------- 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--~-------- 166 (405)
+.+.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.... +.. ...+..| +
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga-----~Vii----~~r~~~~l~~~~~~l~~~~-g~~-~~~~~~D~~~~~~v~~~~ 94 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGA-----QCVI----ASRKMDVLKATAEQISSQT-GNK-VHAIQCDVRDPDMVQNTV 94 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-SSC-EEEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHHhc-CCc-eEEEEecccChHHHHHHh
Confidence 6788999999999999999999885 3555 5677777777777775432 110 0111111 2
Q ss_pred ---ccccCCCcEEEEeCCcC
Q 015501 167 ---YELFEDAEWALLIGAKP 183 (405)
Q Consensus 167 ---~eal~dADiVIi~~g~~ 183 (405)
.+.+...|++|..+|..
T Consensus 95 ~~~~~~~g~iDilvnnAg~~ 114 (294)
T d1w6ua_ 95 SELIKVAGHPNIVINNAAGN 114 (294)
T ss_dssp HHHHHHTCSCSEEEECCCCC
T ss_pred hhhhhhccccchhhhhhhhc
Confidence 23345789999877653
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.12 Score=46.20 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=38.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~ 152 (405)
-+++.|+||++.+|.++|..|+..|. .|.+ .++++++++..+.++...
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~-----~Vil----~~r~~~~l~~~~~~~~~~ 61 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGA-----HVVV----TARSKETLQKVVSHCLEL 61 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHhhh
Confidence 46899999999999999999999885 2554 577888888777766543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.24 E-value=0.033 Score=49.83 Aligned_cols=118 Identities=15% Similarity=0.023 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-------cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~e 168 (405)
-+++.|+||++.||..++..|+..|. .|.+ .++++++++..+.++.+....+..+++-. ....+
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga-----~V~~----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGA-----KVAF----SDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 35778889999999999999999886 3555 56777888877777643221110011000 01234
Q ss_pred ccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 169 LFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 169 al~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+..-|++|..+|... .+- .+.. ..++.| ....+...+.|++ ..+.||+++-..
T Consensus 77 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~---~~G~Iv~isS~~ 140 (253)
T d1hxha_ 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE---TGGSIINMASVS 140 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT---TCEEEEEECCGG
T ss_pred HhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCCceecccchh
Confidence 4567899999877543 111 1221 223444 3345666666654 358888888544
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.22 E-value=0.38 Score=42.12 Aligned_cols=118 Identities=13% Similarity=0.131 Sum_probs=72.0
Q ss_pred E-EEEEcCCCchHHHHHHHHHhcccC--CCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC--------
Q 015501 98 N-IAVSGAAGMIANHLLFKLAAGEVL--GPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN-------- 165 (405)
Q Consensus 98 K-I~IIGAaG~VGs~la~~L~~~~~~--~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~-------- 165 (405)
+ |.|+||++.||.+++..|++.|.- ..+..+.+ .+++.+.++..+.++.... . ++. +..|
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~----~~r~~~~l~~~~~~~~~~g-~---~~~~~~~Dvt~~~~v~ 73 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVL----SSRTAADLEKISLECRAEG-A---LTDTITADISDMADVR 73 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEE----EESCHHHHHHHHHHHHTTT-C---EEEEEECCTTSHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEEecCCCHHHHH
Confidence 5 457899999999999999998752 11111333 5777888888887776432 1 111 1111
Q ss_pred -----cccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 166 -----PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 166 -----~~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
..+.+..-|++|..+|... ++- .+-. ..++.| ..+.+...+.|++. ..+.||+++.-.
T Consensus 74 ~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS~~ 146 (240)
T d2bd0a1 74 RLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ--HSGHIFFITSVA 146 (240)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc--CCCceEEEechh
Confidence 2345567999998877542 221 1111 234444 34567777788774 578888887543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.22 E-value=0.25 Score=43.86 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc--------
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP-------- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~-------- 166 (405)
+-+++.|+||++.||..++..|++.|. .|.+ .++++++++..+.++.+..... .-+..-..+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-----~V~i----~~r~~~~l~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~ 74 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-----RVYT----CSRNEKELDECLEIWREKGLNV-EGSVCDLLSRTERDKLM 74 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCCc-eEEEeecCCHHHHHHHH
Confidence 346899999999999999999999886 2555 5677778877776665433111 001110111
Q ss_pred ---ccccC-CCcEEEEeCCcCC-CCCC--chh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 167 ---YELFE-DAEWALLIGAKPR-GPGM--ERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 167 ---~eal~-dADiVIi~~g~~~-k~g~--~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+.+. .-|++|..+|... .+-. +.. ..++.| ....+.+.+.+.+- ..+.+|+++-..
T Consensus 75 ~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~--~~g~ii~isS~~ 145 (258)
T d1ae1a_ 75 QTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSSIA 145 (258)
T ss_dssp HHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECCGG
T ss_pred HHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc--cccccccccccc
Confidence 12332 3678777766432 2211 211 223333 33455566677664 577888777554
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.29 Score=43.18 Aligned_cols=116 Identities=14% Similarity=0.033 Sum_probs=69.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c-------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~------- 166 (405)
+.+.|+||++.||.+++..|++.|. .|.+ .+++.++++..+.++.+.. + ..++.. ..| +
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dv~~~~~v~~~ 72 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGA-----KVAL----VDWNLEAGVQCKAALHEQF-E-PQKTLFIQCDVADQQQLRDT 72 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTTTS-C-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-C-CCcEEEEEeecCCHHHHHHH
Confidence 5677889999999999999999885 3555 5677788877777765432 1 112221 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCCCCCchhhhHHhhH----HHHHHHHHHHHhhc-CCCeEEEEeCCch
Q 015501 167 ----YELFEDAEWALLIGAKPRGPGMERAGLLDING----QIFAEQGKALNAVA-SRNVKVIVVGNPC 225 (405)
Q Consensus 167 ----~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~----~i~~~i~~~i~~~a-~p~a~vIvvtNP~ 225 (405)
.+.+-.-|++|..+|..... +-.+.++.|. ...+...+.+.+.. +..+.||+++-..
T Consensus 73 ~~~~~~~~G~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~ 138 (254)
T d2gdza1 73 FRKVVDHFGRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA 138 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred HHHHHHHcCCcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence 23345789999887754322 2222333343 34555556665532 1347788887443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.11 E-value=0.04 Score=48.82 Aligned_cols=153 Identities=16% Similarity=0.102 Sum_probs=84.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-------cCccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------~~~~e 168 (405)
-+++.|+||++.+|..+|..|+..|. .|.+ .+++.++++....++......+..+++-. ..-.+
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGA-----SLVA----VDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999886 3555 46677777766655542211100000000 01134
Q ss_pred ccCCCcEEEEeCCcC-CCCC--Cchh---hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHH--HHHHHHHCCCCC
Q 015501 169 LFEDAEWALLIGAKP-RGPG--MERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN--ALICLKNAPSIP 240 (405)
Q Consensus 169 al~dADiVIi~~g~~-~k~g--~~r~---~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~--t~~~~k~s~~~~ 240 (405)
.+..-|++|..++.. +++- .+.. ..++.|..-...+.+....+......+++++.-...- .+..+-.+
T Consensus 76 ~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~~~~Y~~s---- 151 (241)
T d2a4ka1 76 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAHYAAG---- 151 (241)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHHHHHHHC----
T ss_pred HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccCccccchh----
Confidence 456789999876643 2221 1222 3456676666666666555544455666666533111 11111111
Q ss_pred CCceeecchhhHHHHHHHHHHHhCCCCCCce
Q 015501 241 AKNFHALTRLDENRAKCQLALKAGVFYDKVS 271 (405)
Q Consensus 241 ~k~ig~gt~LDs~R~~~~lA~~l~v~~~~V~ 271 (405)
| .. -..+-+.+|+.++ ++.|+
T Consensus 152 -K-----~a--l~~lt~~lA~el~--~~gIr 172 (241)
T d2a4ka1 152 -K-----LG--VVGLARTLALELA--RKGVR 172 (241)
T ss_dssp -S-----SH--HHHHHHHHHHHHT--TTTCE
T ss_pred -h-----HH--HHHHHHHHHHHHh--HhCCE
Confidence 1 11 2467788888887 45564
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.07 E-value=0.064 Score=45.02 Aligned_cols=74 Identities=26% Similarity=0.318 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-ceEEEecCcccccCCC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~~~~~eal~dA 173 (405)
+-++|.|+|| |.++.++++.|...+ .|.+ .+++.++++..+.++........ ..+.. .+....+.++
T Consensus 17 ~~k~vlIlGa-GG~arai~~aL~~~~------~i~I----~nR~~~ka~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (177)
T d1nvta1 17 KDKNIVIYGA-GGAARAVAFELAKDN------NIII----ANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGV 84 (177)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHTSSS------EEEE----ECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTC
T ss_pred CCCEEEEECC-cHHHHHHHHHHcccc------ceee----ehhhhhHHHHHHHHHHHhhchhhhhhhhh-hhhhhccchh
Confidence 4579999995 999999999985432 2554 67888888888887765442211 22333 3455677899
Q ss_pred cEEEEeC
Q 015501 174 EWALLIG 180 (405)
Q Consensus 174 DiVIi~~ 180 (405)
|++|.+-
T Consensus 85 dliIn~t 91 (177)
T d1nvta1 85 DIIINAT 91 (177)
T ss_dssp CEEEECS
T ss_pred hhhccCC
Confidence 9999863
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.31 Score=44.24 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=71.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCC-CcceEEE-ecC--c-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKI-GIN--P----- 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~-~~~~v~i-~~~--~----- 166 (405)
-+++.|+||++.||.+++..|+..|. .|.+ .+++.++++..+.+|...... ...++.. ..| +
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga-----~Vvi----~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~ 82 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGS-----NVVI----ASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 82 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHH
Confidence 46889999999999999999999885 3555 577788888888887643211 1122222 111 1
Q ss_pred ------ccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 ------YELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ------~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+..-|++|..+|... .+- .+.. ..++.| ..+.+...+.+.+. ..+.||+++.
T Consensus 83 ~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~g~Ii~~ss 153 (297)
T d1yxma1 83 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE--HGGSIVNIIV 153 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH--HCEEEEEECC
T ss_pred HHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccc--cccccccccc
Confidence 233557899998776532 221 1111 234445 33456666676664 3566666653
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.02 E-value=0.21 Score=44.38 Aligned_cols=114 Identities=11% Similarity=0.098 Sum_probs=66.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC--c-------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P------- 166 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~------- 166 (405)
+.+.|+||++.||..++..|+..|. .|.+ .+++.++++..+.++...... ..++... .| +
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvt~~~~v~~~ 75 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGA-----KVTI----TGRHAERLEETRQQILAAGVS-EQNVNSVVADVTTDAGQDEI 75 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC-cCceEEEEccCCCHHHHHHH
Confidence 4667889999999999999999885 3555 577788888888887654311 1122221 11 1
Q ss_pred ----ccccCCCcEEEEeCCcCC-----CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 ----YELFEDAEWALLIGAKPR-----GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 ----~eal~dADiVIi~~g~~~-----k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+.+..-|++|..+|... ++. ++.. ..++.| ..+.+...+.+++. ..++|++.+
T Consensus 76 ~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~~S 147 (264)
T d1spxa_ 76 LSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--KGEIVNISS 147 (264)
T ss_dssp HHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc--cCcceeeee
Confidence 234457899998776421 111 1211 123444 33556666777663 455655554
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.065 Score=49.06 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.||.|+||+|+||++++..|+..+.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~ 27 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY 27 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC
Confidence 4899999999999999999998775
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=93.95 E-value=0.026 Score=48.77 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||+.++..+..-|+ .+.. +|+....-..... .+....+..+.++.||+
T Consensus 49 gktvgIiG-~G~IG~~va~~l~~fg~-----~v~~----~d~~~~~~~~~~~-----------~~~~~~~l~~ll~~sD~ 107 (193)
T d1mx3a1 49 GETLGIIG-LGRVGQAVALRAKAFGF-----NVLF----YDPYLSDGVERAL-----------GLQRVSTLQDLLFHSDC 107 (193)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE----ECTTSCTTHHHHH-----------TCEECSSHHHHHHHCSE
T ss_pred CceEEEec-cccccccceeeeecccc-----ceee----ccCcccccchhhh-----------ccccccchhhccccCCE
Confidence 47999999 59999999999887554 2332 3432221111111 11122456788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+. ++ .+ -|.+. +... ++++++||++=
T Consensus 108 i~~~~--plt~~-T~-~l--i~~~~-------l~~m-k~~a~lIN~sR 141 (193)
T d1mx3a1 108 VTLHC--GLNEH-NH-HL--INDFT-------VKQM-RQGAFLVNTAR 141 (193)
T ss_dssp EEECC--CCCTT-CT-TS--BSHHH-------HTTS-CTTEEEEECSC
T ss_pred EEEee--ccccc-ch-hh--hhHHH-------Hhcc-CCCCeEEecCC
Confidence 99863 22221 11 11 12222 2333 58899999984
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.034 Score=50.91 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=57.8
Q ss_pred CEE-EEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCc---c----c
Q 015501 97 VNI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---Y----E 168 (405)
Q Consensus 97 ~KI-~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~---~----e 168 (405)
+|| .|+||+|+||++++..|+..|. +.+.+.......+..+++....+. ......++.+...+ . +
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~----~V~~i~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~d~~~~~~ 73 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY----EVHGIVRRSSSFNTGRIEHLYKNP---QAHIEGNMKLHYGDLTDSTCLVK 73 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEECCCSSCCCTTTGGGC------------CEEEEECCTTCHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC----EEEEEECCCcccchhhHHHHhhch---hhhccCCcEEEEeecCCchhhHH
Confidence 489 5999999999999999999875 122332211111112222111111 10111233332221 1 2
Q ss_pred ccC--CCcEEEEeCCcCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCC-eEEEEeC
Q 015501 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRN-VKVIVVG 222 (405)
Q Consensus 169 al~--dADiVIi~~g~~~k~--g~~r~~ll~~N~~i~~~i~~~i~~~a~p~-a~vIvvt 222 (405)
++. +.|+|+..++..... .....+..+-|+.-...+.+.++++.-.+ .++|.+|
T Consensus 74 ~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~S 132 (347)
T d1t2aa_ 74 IINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS 132 (347)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred HHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEec
Confidence 222 445666655432111 11233445677777777888887764222 4566554
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.88 E-value=0.069 Score=45.47 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=43.9
Q ss_pred CCEEEEEc-CCCchHHHHHHHHHhcccCCCCCceEEEeccccch--hhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 96 MVNIAVSG-AAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 96 ~~KI~IIG-AaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
-.||+++| +..+|..+++..+..-|+ .|.+..-+.. .+.....+.++.... ...++++.+..+++++
T Consensus 5 ~lkia~vGD~~nnV~~Sli~~~~~~G~-------~l~l~~P~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~eai~~ 74 (185)
T d1dxha2 5 DISYAYLGDARNNMGNSLLLIGAKLGM-------DVRIAAPKALWPHDEFVAQCKKFAEES---GAKLTLTEDPKEAVKG 74 (185)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTTC-------EEEEECCGGGSCCHHHHHHHHHHHHHH---TCEEEEESCHHHHTTT
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHcCC-------EEEEEccHHHHhhhHHHHHHHHHhhcc---CCeEEEEeChhhcccc
Confidence 47999999 223688888877776553 3333322110 111112222222211 2367888899999999
Q ss_pred CcEEEEeC
Q 015501 173 AEWALLIG 180 (405)
Q Consensus 173 ADiVIi~~ 180 (405)
+|+|...-
T Consensus 75 aDvVyt~~ 82 (185)
T d1dxha2 75 VDFVHTDV 82 (185)
T ss_dssp CSEEEECC
T ss_pred ccEEEeeh
Confidence 99988753
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.85 E-value=0.42 Score=42.38 Aligned_cols=117 Identities=9% Similarity=0.032 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC---------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--------- 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--------- 165 (405)
-+.+.|+||++.||..++..|+..|. .|.+ .|+++++++..+.++.... . ..-+..- ++
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-~-~~~~~~Dv~~~~~v~~~~~ 74 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGA-----KVVI----ADIADDHGQKVCNNIGSPD-V-ISFVHCDVTKDEDVRNLVD 74 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCTT-T-EEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhcCCC-c-eEEEEccCCCHHHHHHHHH
Confidence 35788899999999999999999875 3555 5677788887777775321 1 0001110 11
Q ss_pred -cccccCCCcEEEEeCCcC-CCCC----Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 166 -PYELFEDAEWALLIGAKP-RGPG----MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 166 -~~eal~dADiVIi~~g~~-~k~g----~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
..+.+...|++|..+|.. ..+. ++.. ..++.|+ -+.+...+.|.+. ..+.+|+++.-.
T Consensus 75 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~g~ii~iss~~ 145 (268)
T d2bgka1 75 TTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA--KKGSIVFTASIS 145 (268)
T ss_dssp HHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG--TCEEEEEECCGG
T ss_pred HHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc--CCCCcccccccc
Confidence 123455789999887643 2221 1211 2344443 3455666777663 467777776543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.83 E-value=0.015 Score=53.20 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+|+.|+||+|+||++++..|++.|.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~ 26 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY 26 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC
Confidence 5888999999999999999999875
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.82 E-value=0.22 Score=44.21 Aligned_cols=114 Identities=13% Similarity=0.039 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~------ 166 (405)
-+++.|+||++.||..++..|+..|. .|.+ .++++++++..+.++.... . ++.. ..| +
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~~ 74 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGA-----VIHT----CARNEYELNECLSKWQKKG-F---QVTGSVCDASLRPEREK 74 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---ceEEEeccCCCHHHHHH
Confidence 46899999999999999999999886 2554 5677788887777765432 1 1111 111 1
Q ss_pred -----ccccC-CCcEEEEeCCcCC-CC--CCchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 167 -----YELFE-DAEWALLIGAKPR-GP--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 167 -----~eal~-dADiVIi~~g~~~-k~--g~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+.+. .-|++|..+|... ++ .++.. ..++.|+ .+.+...+.|++. ..+.||+++--
T Consensus 75 ~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Iv~isS~ 146 (259)
T d1xq1a_ 75 LMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS--GCGNIIFMSSI 146 (259)
T ss_dssp HHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCEEEEEC--
T ss_pred HHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccc--ccccccccccc
Confidence 12332 4799998877532 22 12222 2344443 3455666666664 46777777643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=93.81 E-value=0.19 Score=44.44 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=50.3
Q ss_pred EE-EEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC----------
Q 015501 98 NI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---------- 165 (405)
Q Consensus 98 KI-~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~---------- 165 (405)
|| .|+||++.||..++..|++.|. .|.+ .++++++++..+.++.+.. . ++.. ..|
T Consensus 3 KValITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~l~~~~~~l~~~g-~---~~~~~~~Dvs~~~~v~~~ 69 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL-----RVFV----CARGEEGLRTTLKELREAG-V---EADGRTCDVRSVPEIEAL 69 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEeecCCHHHHHHH
Confidence 55 5779999999999999999886 2555 5677788888887776532 1 1111 111
Q ss_pred ---cccccCCCcEEEEeCCcC
Q 015501 166 ---PYELFEDAEWALLIGAKP 183 (405)
Q Consensus 166 ---~~eal~dADiVIi~~g~~ 183 (405)
..+.+..-|++|..+|..
T Consensus 70 ~~~~~~~~g~iDilVnnAG~~ 90 (257)
T d2rhca1 70 VAAVVERYGPVDVLVNNAGRP 90 (257)
T ss_dssp HHHHHHHTCSCSEEEECCCCC
T ss_pred HHHHHHHhCCCCEEEeccccc
Confidence 134456789999887764
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=93.68 E-value=0.07 Score=50.04 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
....++||| +|..+..-+..+.. +++- ++|.+ .+++.++.+..+.++.+. ...++.+..+..+++++||
T Consensus 127 da~~l~iiG-~G~QA~~~~~a~~~--v~~i-~~V~v----~~r~~~~~~~~~~~l~~~---~g~~v~~~~s~~eav~~AD 195 (340)
T d1x7da_ 127 NARKMALIG-NGAQSEFQALAFHK--HLGI-EEIVA----YDTDPLATAKLIANLKEY---SGLTIRRASSVAEAVKGVD 195 (340)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHH--HSCC-CEEEE----ECSSHHHHHHHHHHHTTC---TTCEEEECSSHHHHHTTCS
T ss_pred CCceEEEEc-ccHHHHHHHHHHhh--hcce-eeeEE----EecChHHHHHHHHhhhhc---cCCCceecCCHHHHHhcCC
Confidence 468999999 59998876666654 2221 24544 567778888788777542 1236777778899999999
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+.+
T Consensus 196 Ii~t~ 200 (340)
T d1x7da_ 196 IITTV 200 (340)
T ss_dssp EEEEC
T ss_pred ceeec
Confidence 99864
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=93.67 E-value=0.46 Score=37.76 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=20.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
|||+|.||+|.+|+.++..+...+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~ 24 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG 24 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC
Confidence 699999999999999887666543
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.054 Score=45.36 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dAD 174 (405)
..+||+|+||+|.+|+.++..+.+.+- +.|. -.+++..... .-.|+.+........+.++.+..+.++++|
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~------~~lv-~~~~~~~~~~--~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEG------VQLG-AALEREGSSL--LGSDAGELAGAGKTGVTVQSSLDAVKDDFD 73 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTT------EECC-CEECCTTCTT--CSCCTTCSSSSSCCSCCEESCSTTTTTSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC------CEEE-EEEecccchh--ccchhhhhhccccCCceeeccHHHHhcccc
Confidence 368999999999999999998887642 2210 0022211110 112222221111124566677778889999
Q ss_pred EEEE
Q 015501 175 WALL 178 (405)
Q Consensus 175 iVIi 178 (405)
+||=
T Consensus 74 ViID 77 (162)
T d1diha1 74 VFID 77 (162)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8874
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=93.56 E-value=0.07 Score=48.12 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-------ecCcc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPY 167 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-------~~~~~ 167 (405)
+-+++.|+||++.||..++..|+..|. .|.+ .+++.++++....++.........+++- .....
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 74 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGA-----KVAV----LDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCV 74 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHH
Confidence 346889999999999999999999885 3555 5677788876666654322111000000 00123
Q ss_pred cccCCCcEEEEeCCcCCCCC------Cc--h---hhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 168 ELFEDAEWALLIGAKPRGPG------ME--R---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k~g------~~--r---~~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
+.+...|++|..+|...... .+ . ...++.| ....+...+.|.+. ...+|++.+
T Consensus 75 ~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~g~iI~i~S 142 (276)
T d1bdba_ 75 ARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS--RGNVIFTIS 142 (276)
T ss_dssp HHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc--CCCceeeee
Confidence 44567899998776432111 11 1 1223334 34566667777663 345555554
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.54 E-value=0.051 Score=45.74 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=42.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc--CCCc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDAE 174 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal--~dAD 174 (405)
+||+|||+ |.+|...+..|...+-+ ++.- + .|++.++++..+... ......+++.+..+.+ .+.|
T Consensus 2 iki~iIG~-G~~g~~~~~~l~~~~~~----~i~a-i--~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ll~~~~iD 68 (184)
T d1ydwa1 2 IRIGVMGC-ADIARKVSRAIHLAPNA----TISG-V--ASRSLEKAKAFATAN-----NYPESTKIHGSYESLLEDPEID 68 (184)
T ss_dssp EEEEEESC-CTTHHHHHHHHHHCTTE----EEEE-E--ECSSHHHHHHHHHHT-----TCCTTCEEESSHHHHHHCTTCC
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCCC----EEEE-E--EeCCccccccchhcc-----ccccceeecCcHHHhhhccccc
Confidence 69999995 99999998888764321 2221 2 466666665544322 2222344555544444 4688
Q ss_pred EEEEe
Q 015501 175 WALLI 179 (405)
Q Consensus 175 iVIi~ 179 (405)
+|+++
T Consensus 69 ~v~I~ 73 (184)
T d1ydwa1 69 ALYVP 73 (184)
T ss_dssp EEEEC
T ss_pred eeeec
Confidence 99886
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.48 E-value=0.22 Score=44.17 Aligned_cols=116 Identities=15% Similarity=0.055 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCCCcceEEE-ecC--------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKI-GIN-------- 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~~~~~v~i-~~~-------- 165 (405)
-+.+.|+||++.||.++|..|++.|. .|.+ .+++ .+.++....++.... . .++.. ..|
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga-----~V~~----~~r~~~~~~~~~~~~~~~~~-g--~~~~~~~~Dv~~~~~v~ 71 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGA-----DIVL----NGFGDAAEIEKVRAGLAAQH-G--VKVLYDGADLSKGEAVR 71 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----ECCSCHHHHHHHHHHHHHHH-T--SCEEEECCCTTSHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCcHHHHHHHHHHHHHhc-C--CcEEEEECCCCCHHHHH
Confidence 35778889999999999999999885 3555 3443 345555555553321 1 01111 111
Q ss_pred -----cccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 166 -----PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 166 -----~~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
..+.+-.-|++|..+|... ++- .+.. ..++.| ....+...+.+.+. ..+.||+++-..
T Consensus 72 ~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Iv~isS~~ 144 (260)
T d1x1ta1 72 GLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ--GFGRIINIASAH 144 (260)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhc--CCceEeeccccc
Confidence 1234457899998877543 221 1111 234444 34566777777774 468888887543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.48 E-value=0.28 Score=43.08 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCc-c---eEE-EecCcccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-R---EVK-IGINPYEL 169 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~-~---~v~-i~~~~~ea 169 (405)
+-+++.|+||++.||..++..|++.|. .|.+ .++++++++..+.++........ . .+. ......+.
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA-----RLVA----CDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 346889999999999999999999885 3555 56777777755544421110000 0 000 00011344
Q ss_pred cCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 170 FEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 170 l~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
+..-|++|..+|... ++- .+.. ..++.|+ .+.+...+.+.+. ..+.+++.+-
T Consensus 75 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~~~i~~~ss 136 (242)
T d1ulsa_ 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK--NPGSIVLTAS 136 (242)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCEEEEEECC
T ss_pred cCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc--ccceeeeecc
Confidence 557899998877543 221 1222 2344443 3455566666653 4566666553
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=93.36 E-value=0.22 Score=39.05 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=30.8
Q ss_pred eeEEeeccchhHhhhhccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 77 VFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||.+.---..+...+.+.+..+|+|||| |.+|..+|..|...+.
T Consensus 11 v~~lrtl~Da~~l~~~~~~~~~vvIIGg-G~iG~E~A~~l~~~g~ 54 (121)
T d1d7ya2 11 VHTLRTLEDARRIQAGLRPQSRLLIVGG-GVIGLELAATARTAGV 54 (121)
T ss_dssp EEECCSHHHHHHHHHHCCTTCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred EEEeCCHHHHHHHHHhhhcCCeEEEECc-chhHHHHHHHhhcccc
Confidence 6655322222222345566789999995 9999999999998764
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=93.24 E-value=0.025 Score=50.37 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++||.|+||+|+||++++..|+..|.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~ 28 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH 28 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence 457899999999999999999998774
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=93.22 E-value=0.055 Score=44.79 Aligned_cols=67 Identities=24% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC-CC
Q 015501 96 MVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~-la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~-dA 173 (405)
.+||+|||+ |.+|.. .+..|...+- +.+.+ .|.+.++++..+.++... .++++..+.++ +.
T Consensus 1 tirvgiiG~-G~~~~~~~~~~l~~~~~------~~~~~--~d~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~i 63 (167)
T d1xeaa1 1 SLKIAMIGL-GDIAQKAYLPVLAQWPD------IELVL--CTRNPKVLGTLATRYRVS--------ATCTDYRDVLQYGV 63 (167)
T ss_dssp CEEEEEECC-CHHHHHTHHHHHTTSTT------EEEEE--ECSCHHHHHHHHHHTTCC--------CCCSSTTGGGGGCC
T ss_pred CeEEEEEcC-CHHHHHHHHHHHHhCCC------cEEEE--EECCHHHHHHHHHhcccc--------cccccHHHhccccc
Confidence 379999995 999976 5555544332 33333 456667777666543211 12233334443 67
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+++
T Consensus 64 D~V~I~ 69 (167)
T d1xeaa1 64 DAVMIH 69 (167)
T ss_dssp SEEEEC
T ss_pred ceeccc
Confidence 998886
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=93.20 E-value=0.65 Score=35.50 Aligned_cols=70 Identities=11% Similarity=-0.009 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.+||.|||+ |.+|...+..|+..|. .+.+ ++.+..++ +. .+.+.. . -...-..-..+++.++++
T Consensus 12 ~k~vlVvG~-G~va~~ka~~ll~~ga-----~v~v--~~~~~~~~-~~----~~~~~~-~--i~~~~~~~~~~dl~~~~l 75 (113)
T d1pjqa1 12 DRDCLIVGG-GDVAERKARLLLEAGA-----RLTV--NALTFIPQ-FT----VWANEG-M--LTLVEGPFDETLLDSCWL 75 (113)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTB-----EEEE--EESSCCHH-HH----HHHTTT-S--CEEEESSCCGGGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--EeccCChH-HH----HHHhcC-C--ceeeccCCCHHHhCCCcE
Confidence 479999995 9999999999998775 2443 22232222 11 121111 0 112222345678999999
Q ss_pred EEEeCC
Q 015501 176 ALLIGA 181 (405)
Q Consensus 176 VIi~~g 181 (405)
|+.+.+
T Consensus 76 v~~at~ 81 (113)
T d1pjqa1 76 AIAATD 81 (113)
T ss_dssp EEECCS
T ss_pred EeecCC
Confidence 988644
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.96 E-value=0.029 Score=49.44 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++||.|+||+|++|++++..|+..|.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~ 28 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGH 28 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 46999999999999999999998774
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.95 Score=40.41 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=59.8
Q ss_pred CEEEEE-cCCCchHHHHHHHHHhcccCCCCCceEEEeccccc-hhhhHHHHHHHhhhhcCCCcceEEEe-cC--ccc---
Q 015501 97 VNIAVS-GAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (405)
Q Consensus 97 ~KI~II-GAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~-~~--~~e--- 168 (405)
+||++| ||++.||.++|..|++.|.- .+.+.....+. ..++++..+.++... ..++... .| +++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~----v~~v~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~ 73 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQ----SFKVYATLRDLKTQGRLWEAARALACP----PGSLETLQLDVRDSKSVA 73 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTC----CEEEEEEESCGGGTHHHHHHHHHTTCC----TTSEEEEECCTTCHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCC----eEEEEEecCChhhhHHHHHHHHHHhcc----CCceEEEeccccchHhhh
Confidence 577755 99999999999999997752 12222211121 122333333333211 1122221 11 111
Q ss_pred ----c--cCCCcEEEEeCCcCCCCCC---ch---hhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 169 ----L--FEDAEWALLIGAKPRGPGM---ER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 169 ----a--l~dADiVIi~~g~~~k~g~---~r---~~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
. -...|+++..++....... +. ...++-| ..+.+.+.+.|.+. ..|.||+++-
T Consensus 74 ~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~--~~G~Iv~isS 142 (285)
T d1jtva_ 74 AARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR--GSGRVLVTGS 142 (285)
T ss_dssp HHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEE
T ss_pred hhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHc--CCCceEEEec
Confidence 1 1468888887765322111 11 1234444 33566777778774 4677777764
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.88 E-value=0.061 Score=46.20 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=52.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||+.++..+...++ .+.. +|+......... ... .....+..+.++.||+
T Consensus 47 g~tvgIiG-~G~IG~~va~~l~~fg~-----~v~~----~d~~~~~~~~~~---~~~-------~~~~~~l~~ll~~sD~ 106 (191)
T d1gdha1 47 NKTLGIYG-FGSIGQALAKRAQGFDM-----DIDY----FDTHRASSSDEA---SYQ-------ATFHDSLDSLLSVSQF 106 (191)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE----ECSSCCCHHHHH---HHT-------CEECSSHHHHHHHCSE
T ss_pred ccceEEee-cccchHHHHHHHHhhcc-----cccc----ccccccccchhh---ccc-------ccccCCHHHHHhhCCe
Confidence 47999999 59999999988876554 2332 233222111111 111 1122345789999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+. + ..++ |.+ .++.. ++++++||++-
T Consensus 107 v~l~~--plt~~-T-~~li--~~~-------~l~~m-k~~a~lIN~sR 140 (191)
T d1gdha1 107 FSLNA--PSTPE-T-RYFF--NKA-------TIKSL-PQGAIVVNTAR 140 (191)
T ss_dssp EEECC--CCCTT-T-TTCB--SHH-------HHTTS-CTTEEEEECSC
T ss_pred EEecC--CCCch-H-hhee--cHH-------HhhCc-CCccEEEecCC
Confidence 99863 32221 1 1111 212 22333 58899999984
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.062 Score=44.35 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=39.1
Q ss_pred CEEEEEcCCCchHHH-HHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~-la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
+||+||| +|.+|.. .+..+...+-+ ++. .+ .|++.++++..+.++. .+ ...+..+.+++.|+
T Consensus 2 iri~iIG-~G~~g~~~~~~~l~~~~~~----~i~-~v--~d~~~~~~~~~~~~~~---~~------~~~~~~~l~~~~D~ 64 (164)
T d1tlta1 2 LRIGVVG-LGGIAQKAWLPVLAAASDW----TLQ-GA--WSPTRAKALPICESWR---IP------YADSLSSLAASCDA 64 (164)
T ss_dssp EEEEEEC-CSTHHHHTHHHHHHSCSSE----EEE-EE--ECSSCTTHHHHHHHHT---CC------BCSSHHHHHTTCSE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHhCCCc----EEE-EE--EechhHhhhhhhhccc---cc------ccccchhhhhhccc
Confidence 6999999 5999985 55666543211 121 12 4666666665554331 11 23344455689999
Q ss_pred EEEe
Q 015501 176 ALLI 179 (405)
Q Consensus 176 VIi~ 179 (405)
|+++
T Consensus 65 V~I~ 68 (164)
T d1tlta1 65 VFVH 68 (164)
T ss_dssp EEEC
T ss_pred cccc
Confidence 9886
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.75 E-value=0.021 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|||.|+||+|+||++++..|...|.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~ 26 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV 26 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999988764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=92.67 E-value=0.55 Score=41.35 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c-----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~----- 166 (405)
+-+++.|+||++.||.+++..|++.|. .|.+ .+++.+.++..+.++.... + .++.. ..| +
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~~~~~~-g--~~~~~~~~Dv~~~~~v~ 75 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-----NVAV----IYRSAADAVEVTEKVGKEF-G--VKTKAYQCDVSNTDIVT 75 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-----EEEE----EESSCTTHHHHHHHHHHHH-T--CCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHHh-C--CceEEEEccCCCHHHHH
Confidence 346788999999999999999999886 3555 4555566665555554322 1 11111 111 1
Q ss_pred ------ccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 167 ------YELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 167 ------~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
.+.+..-|++|..+|... ++- .+.. ..++.|. ...+.+.+.+.+.. ..+.+++.+.
T Consensus 76 ~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~~g~i~~~~s 147 (260)
T d1h5qa_ 76 KTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQ-QKGSIVVTSS 147 (260)
T ss_dssp HHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECC
T ss_pred HHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccc-cceEEEEeec
Confidence 234567899988776532 221 1222 2344443 34566677776553 5677766554
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.62 E-value=0.44 Score=42.22 Aligned_cols=115 Identities=13% Similarity=0.060 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccch-hhhHHHHHHHhhhhcCCCcceEEE-ecC--c-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKI-GIN--P----- 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~-~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~----- 166 (405)
-+.+.|+||++.||.+++..|+..|. .|.+ .+++ ++.++..+.++.+.. .++.. ..| +
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~-----~Vv~----~~r~~~~~~~~~~~~~~~~g----~~~~~~~~Dvt~~~~v~ 73 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKA-----KVVV----NYRSKEDEANSVLEEIKKVG----GEAIAVKGDVTVESDVI 73 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCcHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHH
Confidence 36788899999999999999999885 3554 3443 345666666665432 11111 111 1
Q ss_pred ------ccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 167 ------YELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 167 ------~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+.+..-|++|..+|... .+- .+.. ..++.| ....+...+.+.+. +..+.|++++-.
T Consensus 74 ~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~~Iv~isS~ 146 (261)
T d1geea_ 74 NLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN-DIKGTVINMSSV 146 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECCG
T ss_pred HHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccc-cccccccccccc
Confidence 233457899998877543 221 1222 234445 33466667777764 355667777644
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.55 E-value=0.074 Score=45.22 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||..++..+..-|. .+.. .|+... +.. . ....+..+.+++||+
T Consensus 42 gk~vgIiG-~G~IG~~va~~l~~~g~-----~v~~----~d~~~~----------~~~--~----~~~~~l~ell~~sDi 95 (181)
T d1qp8a1 42 GEKVAVLG-LGEIGTRVGKILAALGA-----QVRG----FSRTPK----------EGP--W----RFTNSLEEALREARA 95 (181)
T ss_dssp TCEEEEES-CSTHHHHHHHHHHHTTC-----EEEE----ECSSCC----------CSS--S----CCBSCSHHHHTTCSE
T ss_pred CceEEEec-cccccccceeeeecccc-----cccc----cccccc----------ccc--e----eeeechhhhhhccch
Confidence 46899999 59999999998887554 2332 343211 000 0 112356789999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++. .|..+. ++ .++ |. +.++.. ++++++|+++-
T Consensus 96 v~~~--~pl~~~-t~-~li--~~-------~~l~~m-k~~ailIN~~R 129 (181)
T d1qp8a1 96 AVCA--LPLNKH-TR-GLV--KY-------QHLALM-AEDAVFVNVGR 129 (181)
T ss_dssp EEEC--CCCSTT-TT-TCB--CH-------HHHTTS-CTTCEEEECSC
T ss_pred hhcc--cccccc-cc-ccc--cc-------ceeeec-cccceEEeccc
Confidence 9986 333321 11 122 11 233443 48899999984
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=92.51 E-value=0.098 Score=43.24 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=43.0
Q ss_pred CCEEEEEc-CCCchHHHHHHHHHhcccCCCCCceEEEecccc---chhhhHHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 96 MVNIAVSG-AAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE---RSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 96 ~~KI~IIG-AaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d---~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
..||+++| +..+|-.+++..+...|+ ++.+ ..-. ...+.++ .+.++.. .....+.++.+..++++
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~g~-----~i~~--~~P~~~~~~~~~~~-~~~~~~~---~~~~~i~~~~d~~~ai~ 71 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKMGM-----NFVA--CGPEELKPRSDVFK-RCQEIVK---ETDGSVSFTSNLEEALA 71 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTC-----EEEE--ESCGGGCCCHHHHH-HHHHHHH---HHCCEEEEESCHHHHHT
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCC-----EEEE--ecchhhhhhhhHHH-HHHHHHh---hcCCceEEEecHHHhhh
Confidence 57999999 324677777777776543 2332 2211 1111111 1221211 12246788888999999
Q ss_pred CCcEEEEeC
Q 015501 172 DAEWALLIG 180 (405)
Q Consensus 172 dADiVIi~~ 180 (405)
+||+|....
T Consensus 72 ~aDviyt~~ 80 (161)
T d1vlva2 72 GADVVYTDV 80 (161)
T ss_dssp TCSEEEECC
T ss_pred hhhheeccc
Confidence 999998763
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=0.16 Score=42.86 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=43.3
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcccCCCCCceEEEeccccch--hhhHHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 96 ~~KI~IIGAaG--~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
..||+++| .| +|..+++..+..-|+ .|.+..-... .+.+...+.+.... ....+.++.+..++++
T Consensus 5 ~l~i~~vG-D~~nnv~~Sli~~~~~~g~-------~l~~~~P~~~~~~~~~~~~~~~~~~~---~g~~~~~~~d~~~a~~ 73 (183)
T d1duvg2 5 EMTLVYAG-DARNNMGNSMLEAAALTGL-------DLRLVAPQACWPEAALVTECRALAQQ---NGGNITLTEDVAKGVE 73 (183)
T ss_dssp GCEEEEES-CTTSHHHHHHHHHHHHHCC-------EEEEECCGGGCCCHHHHHHHHHHHHH---TTCEEEEESCHHHHHT
T ss_pred CCEEEEEc-CCccHHHHHHHHHHHHcCC-------EEEEEechHhhhhHHHHHHHHHHHHh---cCCceEEEechhhccc
Confidence 47999999 45 577777777666553 2333322111 11122222222221 2246778888999999
Q ss_pred CCcEEEEeC
Q 015501 172 DAEWALLIG 180 (405)
Q Consensus 172 dADiVIi~~ 180 (405)
++|+|...-
T Consensus 74 ~aDvvyt~~ 82 (183)
T d1duvg2 74 GADFIYTDV 82 (183)
T ss_dssp TCSEEEECC
T ss_pred cCCEEEEEe
Confidence 999998763
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=92.43 E-value=0.57 Score=41.00 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=67.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC--c--------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P-------- 166 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--~-------- 166 (405)
-|.|+||++.+|..++..|+..|. .+.+.. .++++.++....++.... .++.. ..| +
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga-----~V~i~~---~~~~~~~~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~ 70 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC-----KVLVNY---ARSAKAAEEVSKQIEAYG----GQAITFGGDVSKEADVEAMM 70 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHHT----CEEEEEECCTTSHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEe---CCCHHHHHHHHHHHHHcC----CcEEEEeCCCCCHHHHHHHH
Confidence 367889999999999999999885 354421 234556665655554321 11111 111 1
Q ss_pred ---ccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 167 ---YELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 167 ---~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+.+..-|++|..+|... ++- ++.. ..++.| ....+...+.|.+. ..|.||+++--.
T Consensus 71 ~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS~~ 140 (244)
T d1edoa_ 71 KTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIASVV 140 (244)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCTH
T ss_pred HHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc--CCcEEEEEcChh
Confidence 234467899998776532 221 1111 233444 34566677777764 578888887543
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.25 E-value=0.097 Score=48.44 Aligned_cols=72 Identities=15% Similarity=0.046 Sum_probs=50.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
....+++||| +|..+...+..|....-+ ++|.+ .+++.++.+..+.++.+... . +..+..+++++|
T Consensus 123 ~~~~~l~iiG-aG~QA~~~~~al~~~~~i---~~i~v----~~r~~e~~~~~~~~~~~~~~----~--~~~~~~~a~~~a 188 (320)
T d1omoa_ 123 KNSSVFGFIG-CGTQAYFQLEALRRVFDI---GEVKA----YDVREKAAKKFVSYCEDRGI----S--ASVQPAEEASRC 188 (320)
T ss_dssp TTCCEEEEEC-CSHHHHHHHHHHHHHSCC---CEEEE----ECSSHHHHHHHHHHHHHTTC----C--EEECCHHHHTSS
T ss_pred CCccEEEEec-CcccHHHHHHHHHHHhhh---hhccc----ccCCHHHHHHHHHHHHhcCC----c--cccchhhhhccc
Confidence 3468999999 599999877776653222 24554 56788888888877765421 2 233567889999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|+.+
T Consensus 189 DiV~ta 194 (320)
T d1omoa_ 189 DVLVTT 194 (320)
T ss_dssp SEEEEC
T ss_pred cEEEEe
Confidence 999874
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=92.24 E-value=0.034 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=23.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|||.|+||+|+||++++..|+..+.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~ 25 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ 25 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 6999999999999999999998765
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.23 E-value=0.27 Score=44.79 Aligned_cols=122 Identities=11% Similarity=0.100 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecccc-----chhhhHHHHHHHhhhhcCCCcceEEEec-----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-----RSLQALEGVAMELEDSLFPLLREVKIGI----- 164 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d-----~~~~~l~g~a~DL~d~~~~~~~~v~i~~----- 164 (405)
+-+.+.|+||++.||..++..|+..|. .|.+...+.+ ++.+.++..+.++...... ....+..
T Consensus 6 ~gKvalITGas~GIG~aiA~~la~~Ga-----~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~ 78 (302)
T d1gz6a_ 6 DGRVVLVTGAGGGLGRAYALAFAERGA-----LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK--AVANYDSVEAGE 78 (302)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE--EEEECCCGGGHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccc--cccccchHHHHH
Confidence 345788889999999999999999886 2555333221 2344556555555433211 1111111
Q ss_pred ----CcccccCCCcEEEEeCCcCCC-CC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 165 ----NPYELFEDAEWALLIGAKPRG-PG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 165 ----~~~eal~dADiVIi~~g~~~k-~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
...+.+..-|++|..+|..+. +- ++.. ..++.| ..+.+...+.|.+. ..|.||+++-..
T Consensus 79 ~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IV~isS~~ 151 (302)
T d1gz6a_ 79 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ--NYGRIIMTASAS 151 (302)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECCHH
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhC--CCcEEEEeCChh
Confidence 012345678999998876432 11 1211 234444 34566777778774 468888888543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=92.20 E-value=0.22 Score=42.17 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-.+|+|+| .|.||..++..|...++ .+.. .|+.... .....+. .+....+..+.+++||+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~-----~v~~----~d~~~~~-~~~~~~~---------~~~~~~~l~~~l~~sD~ 103 (188)
T d2naca1 44 AMHVGTVA-AGRIGLAVLRRLAPFDV-----HLHY----TDRHRLP-ESVEKEL---------NLTWHATREDMYPVCDV 103 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTC-----EEEE----ECSSCCC-HHHHHHH---------TCEECSSHHHHGGGCSE
T ss_pred ccceeecc-ccccchhhhhhhhccCc-----eEEE----Eeecccc-ccccccc---------cccccCCHHHHHHhccc
Confidence 57999999 59999999998876554 2332 2322111 1111111 11223567889999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
|++.. |..+. ++ .++ |.+ .++.. ++++++||++--
T Consensus 104 v~~~~--plt~~-T~-~li--~~~-------~l~~m-k~ga~lIN~aRG 138 (188)
T d2naca1 104 VTLNC--PLHPE-TE-HMI--NDE-------TLKLF-KRGAYIVNTARG 138 (188)
T ss_dssp EEECS--CCCTT-TT-TCB--SHH-------HHTTS-CTTEEEEECSCG
T ss_pred hhhcc--ccccc-ch-hhh--HHH-------HHHhC-CCCCEEEecCch
Confidence 98863 22111 11 111 111 22333 578999999853
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.11 E-value=0.16 Score=43.24 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=28.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~ 143 (405)
.++-||.|||| |.+|..-+......|. .+.+ +|.+.++++
T Consensus 27 V~pa~VvViGa-GvaG~~Aa~~A~~lGA-----~V~v----~D~~~~~~~ 66 (183)
T d1l7da1 27 VPPARVLVFGV-GVAGLQAIATAKRLGA-----VVMA----TDVRAATKE 66 (183)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSCSTTHH
T ss_pred cCCcEEEEEcC-cHHHHHHHHHHHHcCC-----EEEE----EeccHHHHH
Confidence 45789999995 9999998887777664 2444 455555554
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=91.97 E-value=0.046 Score=45.54 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=18.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHh
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAA 118 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~ 118 (405)
|.+++||+||| +|.+|..+...+++
T Consensus 1 M~kkirvaIIG-aG~ig~~~~~~~l~ 25 (157)
T d1nvmb1 1 MNQKLKVAIIG-SGNIGTDLMIKVLR 25 (157)
T ss_dssp CCSCEEEEEEC-CSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEc-CcHHHHHHHHHHHh
Confidence 44568999999 69999975544443
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=91.96 E-value=0.059 Score=46.27 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=25.6
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||+..+||+|||| |-+|.+.|+.|.+.+.
T Consensus 2 ~~~~~~kVvVIGa-GiaGl~~A~~L~~~G~ 30 (268)
T d1c0pa1 2 MMHSQKRVVVLGS-GVIGLSSALILARKGY 30 (268)
T ss_dssp CCCCSCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEECc-cHHHHHHHHHHHHCCC
Confidence 5666789999995 9999999999999875
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.029 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
..||.|||| |.+|+.++..|+..|+
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gv 61 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGF 61 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999886
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.68 E-value=0.093 Score=44.62 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
.++|+|+| .|.+|..++..+..-++ .|.. .|+....... .+. . +.. .+..|.++.||+
T Consensus 44 ~k~vgiiG-~G~IG~~va~~~~~fg~-----~v~~----~d~~~~~~~~--~~~---~------~~~-~~l~ell~~sDi 101 (184)
T d1ygya1 44 GKTVGVVG-LGRIGQLVAQRIAAFGA-----YVVA----YDPYVSPARA--AQL---G------IEL-LSLDDLLARADF 101 (184)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE----ECTTSCHHHH--HHH---T------CEE-CCHHHHHHHCSE
T ss_pred ceeeeecc-ccchhHHHHHHhhhccc-----eEEe----ecCCCChhHH--hhc---C------cee-ccHHHHHhhCCE
Confidence 47999999 59999999998876443 2332 3443222221 111 0 111 356788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+. ++ .++ |.+ .+... ++++++||++-
T Consensus 102 v~~~~--Plt~~-T~-~li--n~~-------~l~~m-k~~a~lIN~sR 135 (184)
T d1ygya1 102 ISVHL--PKTPE-TA-GLI--DKE-------ALAKT-KPGVIIVNAAR 135 (184)
T ss_dssp EEECC--CCSTT-TT-TCB--CHH-------HHTTS-CTTEEEEECSC
T ss_pred EEEcC--CCCch-hh-hhh--hHH-------HHhhh-CCCceEEEecc
Confidence 99863 32221 11 111 222 22333 58999999984
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.65 E-value=0.92 Score=39.63 Aligned_cols=49 Identities=27% Similarity=0.210 Sum_probs=35.1
Q ss_pred EEEEE-cCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhh
Q 015501 98 NIAVS-GAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (405)
Q Consensus 98 KI~II-GAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~ 152 (405)
||+|| ||++.||..+|..|+....-|. .|.+ .+++.++++..+.+|...
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~----~~r~~~~l~~~~~~l~~~ 56 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLV----SARSESMLRQLKEELGAQ 56 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEE----EESCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEE----EECCHHHHHHHHHHHHhh
Confidence 66665 9999999999999986322121 3554 577888888888877653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.54 E-value=0.38 Score=39.44 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=32.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
++.-+|.|+|| |.+|...+..+...|.- .|.+ +|+++++++ .+.++
T Consensus 25 ~~gd~VlI~G~-G~iG~~~~~~a~~~G~~----~Vi~----~d~~~~rl~-~a~~~ 70 (171)
T d1pl8a2 25 TLGHKVLVCGA-GPIGMVTLLVAKAMGAA----QVVV----TDLSATRLS-KAKEI 70 (171)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----EESCHHHHH-HHHHT
T ss_pred CCCCEEEEECC-CccHHHHHHHHHHcCCc----eEEe----ccCCHHHHH-HHHHh
Confidence 44579999995 99999988888876641 3444 577777776 45544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=91.42 E-value=0.1 Score=43.91 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=44.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH---HHHHHhhhhcCCCcceEEEe-cC----cc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIG-IN----PY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~-~~----~~ 167 (405)
..+|.|+|| |.+|.++++.|...+. ..|.+ .+++.++++ ..+.++.... . ..+.+. .. ..
T Consensus 18 ~k~vlIlGa-GGaarai~~al~~~g~----~~i~i----~nR~~~~~~~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~ 85 (182)
T d1vi2a1 18 GKTMVLLGA-GGASTAIGAQGAIEGL----KEIKL----FNRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 85 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC----SEEEE----EECSSTTHHHHHHHHHHHHHHS-S--CEEEEEETTCHHHHH
T ss_pred CCEEEEECC-cHHHHHHHHHHhhcCC----ceEee----eccchHHHHHHHHHHHHHHhhc-C--cceEeeecccccchh
Confidence 479999995 9999999999999775 23555 455544443 3344443322 2 123332 12 23
Q ss_pred cccCCCcEEEEe
Q 015501 168 ELFEDAEWALLI 179 (405)
Q Consensus 168 eal~dADiVIi~ 179 (405)
+.+.++|+||.+
T Consensus 86 ~~~~~~diiIN~ 97 (182)
T d1vi2a1 86 EALASADILTNG 97 (182)
T ss_dssp HHHHTCSEEEEC
T ss_pred hhhcccceeccc
Confidence 456899999986
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.37 E-value=0.87 Score=40.15 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC---------
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--------- 165 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~--------- 165 (405)
-+++.|+||++.||..++..|+..|. .|.+.. . .+.+.++..+.++.... . ++.. ..|
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga-----~Vvi~~--~-~~~~~~~~~~~~~~~~g-~---~~~~~~~D~~~~~~v~~ 85 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGC-----KVIVNY--A-NSTESAEEVVAAIKKNG-S---DAACVKANVGVVEDIVR 85 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEEE--S-SCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEEe--C-CchHHHHHHHHHHHhhC-C---ceeeEeCCCCCHHHHHH
Confidence 47999999999999999999999885 355422 1 12455555555554322 1 1111 111
Q ss_pred ----cccccCCCcEEEEeCCcCCCCC---Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 166 ----PYELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 166 ----~~eal~dADiVIi~~g~~~k~g---~~---r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
..+.+..-|++|..++...... .+ -...+..|..-.-.+.+.+..+-..++.+++++.-
T Consensus 86 ~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~ 154 (272)
T d1g0oa_ 86 MFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI 154 (272)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred HHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccc
Confidence 1345567899998766432211 11 12234555444444444444433345666666543
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=91.26 E-value=0.099 Score=45.56 Aligned_cols=73 Identities=18% Similarity=0.130 Sum_probs=42.7
Q ss_pred cCCCEEEEEcCCCchHH-HHHHHHHhcccCCCCCceEEE-eccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC
Q 015501 94 KKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs-~la~~L~~~~~~~~d~~i~L~-l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~ 171 (405)
.++.||+|||+ |.+|. +++..+...+- +.|. + .|++.++++..+.++. . + ..++...++..+.++
T Consensus 31 ~~~iriaiIG~-G~~~~~~~~~~~~~~~~------~~ivav--~d~~~~~a~~~~~~~~-i--~-~~~~~~~~d~~ell~ 97 (221)
T d1h6da1 31 DRRFGYAIVGL-GKYALNQILPGFAGCQH------SRIEAL--VSGNAEKAKIVAAEYG-V--D-PRKIYDYSNFDKIAK 97 (221)
T ss_dssp CCCEEEEEECC-SHHHHHTHHHHTTTCSS------EEEEEE--ECSCHHHHHHHHHHTT-C--C-GGGEECSSSGGGGGG
T ss_pred CCCEEEEEEcC-cHHHHHHHHHHHHhCCC------ceEEEE--ecCCHHHHHHHHHhhc-c--c-cccccccCchhhhcc
Confidence 56799999995 99996 45555443321 3222 2 5677777776654431 0 1 123444455445554
Q ss_pred --CCcEEEEe
Q 015501 172 --DAEWALLI 179 (405)
Q Consensus 172 --dADiVIi~ 179 (405)
+.|+|+++
T Consensus 98 ~~~iD~V~I~ 107 (221)
T d1h6da1 98 DPKIDAVYII 107 (221)
T ss_dssp CTTCCEEEEC
T ss_pred cccceeeeec
Confidence 57888876
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.088 Score=46.60 Aligned_cols=112 Identities=10% Similarity=0.001 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe--------cCcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--------INPY 167 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--------~~~~ 167 (405)
-+++.|+||++.+|..++..|+..|. .|.+ .++++++++...... . .+.... ....
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~-----~Vi~----~~r~~~~l~~~~~~~-----~--~~~~~~d~~~~~~~~~~~ 69 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGA-----KVIA----TDINESKLQELEKYP-----G--IQTRVLDVTKKKQIDQFA 69 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHGGGGGST-----T--EEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHhcc-----C--Cceeeeeccccccccccc
Confidence 35678889999999999999999875 3555 466666654332111 1 111111 0123
Q ss_pred cccCCCcEEEEeCCcCCC-CC--Cchhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 168 ELFEDAEWALLIGAKPRG-PG--MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 168 eal~dADiVIi~~g~~~k-~g--~~r~~---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
+.+..-|++|..+|.... +- ++..+ .++-| ..+.+.+.+.+.+. +.+.||+++...
T Consensus 70 ~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~--~~g~Ii~isS~~ 135 (245)
T d2ag5a1 70 NEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSVA 135 (245)
T ss_dssp HHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCSB
T ss_pred cccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC--CCceeeeeechh
Confidence 455688999988775432 21 12221 22333 33455666767664 678888887543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=90.82 E-value=0.45 Score=35.84 Aligned_cols=74 Identities=18% Similarity=0.105 Sum_probs=47.8
Q ss_pred hccCCCEEEEEcCCCchH-HHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccccc
Q 015501 92 SWKKMVNIAVSGAAGMIA-NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (405)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG-s~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal 170 (405)
++.+.+||-+|| -|.+| +++|..|...|. .|.- +|..... ...+|.+.. ..+.. ....+.+
T Consensus 4 ~~~~~~~ihfiG-igG~GMs~LA~~L~~~G~-----~VsG----SD~~~~~---~~~~L~~~G----i~v~~-g~~~~~i 65 (96)
T d1p3da1 4 EMRRVQQIHFIG-IGGAGMSGIAEILLNEGY-----QISG----SDIADGV---VTQRLAQAG----AKIYI-GHAEEHI 65 (96)
T ss_dssp CCTTCCEEEEET-TTSTTHHHHHHHHHHHTC-----EEEE----EESCCSH---HHHHHHHTT----CEEEE-SCCGGGG
T ss_pred cchhCCEEEEEE-ECHHHHHHHHHHHHhCCC-----EEEE----EeCCCCh---hhhHHHHCC----CeEEE-CCccccC
Confidence 467789999999 58888 558999999886 2443 4543222 223343321 13333 3456778
Q ss_pred CCCcEEEEeCCcC
Q 015501 171 EDAEWALLIGAKP 183 (405)
Q Consensus 171 ~dADiVIi~~g~~ 183 (405)
.++|+||.+.+.|
T Consensus 66 ~~~d~vV~S~AI~ 78 (96)
T d1p3da1 66 EGASVVVVSSAIK 78 (96)
T ss_dssp TTCSEEEECTTSC
T ss_pred CCCCEEEECCCcC
Confidence 9999999987765
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=90.76 E-value=0.24 Score=43.71 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe---------cCc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---------INP 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---------~~~ 166 (405)
-+.+.|+||++.||.+++..|++.|. .|.+ .+++++.++ .+.++....++ ..++ ...
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~-----~V~~----~~~~~~~~~-~~~~~~~~~~~----~Dv~~~~~v~~~~~~~ 70 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGA-----LVAL----CDLRPEGKE-VAEAIGGAFFQ----VDLEDERERVRFVEEA 70 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSTTHHH-HHHHHTCEEEE----CCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHH-HHHHcCCeEEE----EeCCCHHHHHHHHHHH
Confidence 46788999999999999999999886 3555 345544433 33322211111 1111 012
Q ss_pred ccccCCCcEEEEeCCcCC-CCCC--chh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 167 YELFEDAEWALLIGAKPR-GPGM--ERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 167 ~eal~dADiVIi~~g~~~-k~g~--~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
.+.+..-|++|..+|... ++-. +.. ..++-| ..+.+...+.|.+. ..+.||+++-..
T Consensus 71 ~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~Ii~isS~~ 137 (248)
T d2d1ya1 71 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVASVQ 137 (248)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCGG
T ss_pred HHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc--cccccccccccc
Confidence 345668899998877532 2211 211 123444 34566666777763 578888887544
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.38 Score=42.66 Aligned_cols=120 Identities=12% Similarity=0.026 Sum_probs=68.8
Q ss_pred CEEE-EEcCCCchHHHHHHHHHhc-ccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC---------
Q 015501 97 VNIA-VSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--------- 165 (405)
Q Consensus 97 ~KI~-IIGAaG~VGs~la~~L~~~-~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~--------- 165 (405)
++|+ |+||++.||..+|..|+.. +. .|.+ .+++.++++..+.+|.... .-..-+..-..
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~-----~Vi~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dvs~~~sv~~~~ 72 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSG-----DVVL----TARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALR 72 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSS-----EEEE----EESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHHHHhcC-CcEEEEEEecCCHHHHHHHH
Confidence 4675 7799999999999999874 43 2554 5778888887877776532 11000111011
Q ss_pred --cccccCCCcEEEEeCCcCC-CCCC--chhh---hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchh
Q 015501 166 --PYELFEDAEWALLIGAKPR-GPGM--ERAG---LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (405)
Q Consensus 166 --~~eal~dADiVIi~~g~~~-k~g~--~r~~---ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d 226 (405)
..+.+..-|++|..+|... .+.. +..+ .+.-|.--...+.+.+-.+-.+.+.||+++.-..
T Consensus 73 ~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~ 141 (275)
T d1wmaa1 73 DFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMS 141 (275)
T ss_dssp HHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH
T ss_pred HHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccce
Confidence 1234457899998887532 2222 2222 3445544444444444433334678888886443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.63 E-value=1.2 Score=35.47 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec--C----cccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYEL 169 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~--~----~~ea 169 (405)
.-+|.|+|+ |.+|..++..|...+. ++.+ +|.+++.......++... ...+..+. + ....
T Consensus 3 knHiII~G~-g~~g~~l~~~L~~~~~-----~v~v----Id~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a~ 68 (153)
T d1id1a_ 3 KDHFIVCGH-SILAINTILQLNQRGQ-----NVTV----ISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKAG 68 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHHT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCC-----CEEE----EeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHhc
Confidence 347999995 9999999999998764 3544 344444433333333211 11222211 1 2345
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-Cchh
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCN 226 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d 226 (405)
+.+||.||++.+. + ..|+.+ +..+++.. |+..++.-. +|-+
T Consensus 69 i~~a~~vi~~~~~------d-----~~n~~~----~~~~r~~~-~~~~iia~~~~~~~ 110 (153)
T d1id1a_ 69 IDRCRAILALSDN------D-----ADNAFV----VLSAKDMS-SDVKTVLAVSDSKN 110 (153)
T ss_dssp TTTCSEEEECSSC------H-----HHHHHH----HHHHHHHT-SSSCEEEECSSGGG
T ss_pred cccCCEEEEcccc------H-----HHHHHH----HHHHHHhC-CCCceEEEEcCHHH
Confidence 7789999987432 0 334333 33445653 776555554 5643
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=90.60 E-value=0.23 Score=41.90 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++||+|||| |..|-+.|..|.+.|+
T Consensus 41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~ 67 (179)
T d1ps9a3 41 VQKKNLAVVGA-GPAGLAFAINAAARGH 67 (179)
T ss_dssp SSCCEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred CCCcEEEEECc-cHHHHHHHHHHHhhcc
Confidence 34689999995 9999999999999885
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=90.51 E-value=1.2 Score=36.07 Aligned_cols=45 Identities=27% Similarity=0.197 Sum_probs=31.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
++--+|.|+| +|.||...+..+...|. .+.. +|.++++++ .+.++
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~Ga-----~vi~----v~~~~~r~~-~a~~~ 69 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYGA-----FVVC----TARSPRRLE-VAKNC 69 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHH-HHHHT
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhcc-----cccc----cchHHHHHH-HHHHc
Confidence 4457999999 59999998887777663 2433 567777765 55544
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=90.48 E-value=0.071 Score=48.94 Aligned_cols=27 Identities=33% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.++|.|+||+|++|++++..|+..|.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~ 28 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH 28 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC
Confidence 357999999999999999999998775
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=90.40 E-value=0.084 Score=48.33 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=23.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|..|+||+|||| |..|-..|..|+..+.
T Consensus 1 m~~~KrVaIIGa-G~sGl~~A~~L~~~~~ 28 (335)
T d2gv8a1 1 LPTIRKIAIIGA-GPSGLVTAKALLAEKA 28 (335)
T ss_dssp CCSCCEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHHhCC
Confidence 356889999995 9999999999987665
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=90.36 E-value=0.14 Score=42.63 Aligned_cols=64 Identities=14% Similarity=0.029 Sum_probs=39.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
++||+|+| .|.+|+.++..|....- +.|.-+ .|++.+... ...+....+..+...+.|+
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~------~elvav-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~D~ 61 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPD------MDLVGI-FSRRATLDT-------------KTPVFDVADVDKHADDVDV 61 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSS------EEEEEE-EESSSCCSS-------------SSCEEEGGGGGGTTTTCSE
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCC------cEEEEE-Eeccccccc-------------ccccccchhhhhhccccce
Confidence 57999999 59999999888876432 332211 344322211 1123334455566789999
Q ss_pred EEEeC
Q 015501 176 ALLIG 180 (405)
Q Consensus 176 VIi~~ 180 (405)
|+++.
T Consensus 62 Vvi~t 66 (170)
T d1f06a1 62 LFLCM 66 (170)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99874
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=90.34 E-value=0.14 Score=38.20 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-+||+|+|+ |..|.++|..|.+.+. .+.+. |...+.+.. .++.+ ...+.......+.+.+.|+
T Consensus 5 ~K~v~ViGl-G~sG~s~a~~L~~~g~-----~v~~~--D~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~d~ 67 (93)
T d2jfga1 5 GKNVVIIGL-GLTGLSCVDFFLARGV-----TPRVM--DTRMTPPGL----DKLPE-----AVERHTGSLNDEWLMAADL 67 (93)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTC-----CCEEE--ESSSSCTTG----GGSCT-----TSCEEESBCCHHHHHHCSE
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCC-----EEEEe--eCCcCchhH----HHHhh-----ccceeecccchhhhccCCE
Confidence 468999995 9999999999998875 24442 221111111 11111 1234444445677889999
Q ss_pred EEEeCCcC
Q 015501 176 ALLIGAKP 183 (405)
Q Consensus 176 VIi~~g~~ 183 (405)
||++-|.|
T Consensus 68 vi~SPGi~ 75 (93)
T d2jfga1 68 IVASPGIA 75 (93)
T ss_dssp EEECTTSC
T ss_pred EEECCCCC
Confidence 99986665
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.16 E-value=0.3 Score=40.34 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEecccc---chhhhHHHHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE---RSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d---~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
-.||+++|-..+|..+++..+..-|+ .+. +..-+ ..++.++ .+.+..... ...+.++.+..+++++
T Consensus 4 gl~Ia~VGD~~nv~~Sli~~l~~~g~-----~v~--~~~P~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~d~~ea~~~ 72 (163)
T d1pvva2 4 GVKVVYVGDGNNVAHSLMIAGTKLGA-----DVV--VATPEGYEPDEKVIK-WAEQNAAES---GGSFELLHDPVKAVKD 72 (163)
T ss_dssp TCEEEEESCCCHHHHHHHHHHHHTTC-----EEE--EECCTTCCCCHHHHH-HHHHHHHHH---TCEEEEESCHHHHTTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC-----eEE--EecccccCCChHHHH-HHHHhhhcc---cceEEEecCHHHHhhh
Confidence 47999999766666777766666442 233 32211 1111111 222111111 1357788888999999
Q ss_pred CcEEEEeC
Q 015501 173 AEWALLIG 180 (405)
Q Consensus 173 ADiVIi~~ 180 (405)
||+|..+-
T Consensus 73 adviy~~~ 80 (163)
T d1pvva2 73 ADVIYTDV 80 (163)
T ss_dssp CSEEEECC
T ss_pred ccEEeecc
Confidence 99988763
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=90.06 E-value=0.17 Score=42.32 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=38.9
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccC--C
Q 015501 96 MVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~-la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~--d 172 (405)
++||+||| +|.+|.. .+..+...+- ..+|. .+ .|++.++++..+.++.. ..++++..+.++ +
T Consensus 3 kirigiIG-~G~~g~~~h~~~l~~~~~---~~~i~-~v--~d~~~~~~~~~~~~~~~--------~~~~~~~~ell~~~~ 67 (181)
T d1zh8a1 3 KIRLGIVG-CGIAARELHLPALKNLSH---LFEIT-AV--TSRTRSHAEEFAKMVGN--------PAVFDSYEELLESGL 67 (181)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHHHTTTT---TEEEE-EE--ECSSHHHHHHHHHHHSS--------CEEESCHHHHHHSSC
T ss_pred CcEEEEEc-CCHHHHHHHHHHHHhCCC---CeEEE-EE--EeccHhhhhhhhccccc--------cceeeeeeccccccc
Confidence 47999999 5999986 4666654221 11232 12 46666666544443321 123445445454 6
Q ss_pred CcEEEEe
Q 015501 173 AEWALLI 179 (405)
Q Consensus 173 ADiVIi~ 179 (405)
.|+|+++
T Consensus 68 id~v~I~ 74 (181)
T d1zh8a1 68 VDAVDLT 74 (181)
T ss_dssp CSEEEEC
T ss_pred cceeecc
Confidence 7888876
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.02 E-value=0.023 Score=50.14 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.++|.|+||+|.+|..++..|++.|.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~ 27 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNW 27 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46999999999999999999999875
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=89.84 E-value=0.24 Score=42.54 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++|+||| .|.||+.++..|..-|+ .|.. +|+.... . ... +.. . ..+..+.++.||+
T Consensus 43 gk~vgIiG-~G~IG~~va~~l~~fg~-----~V~~----~d~~~~~-~-~~~---~~~-~-------~~~l~~~l~~sDi 99 (197)
T d1j4aa1 43 DQVVGVVG-TGHIGQVFMQIMEGFGA-----KVIT----YDIFRNP-E-LEK---KGY-Y-------VDSLDDLYKQADV 99 (197)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSSCCH-H-HHH---TTC-B-------CSCHHHHHHHCSE
T ss_pred CCeEEEec-ccccchhHHHhHhhhcc-----cccc----cCccccc-c-ccc---cee-e-------ecccccccccccc
Confidence 47999999 59999999999987554 2322 3433221 1 111 111 0 1346788999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++.. |..+. ...++ |.+.+ +.. ++++++||++=
T Consensus 100 i~~~~--plt~~--T~~li--~~~~l-------~~m-k~~a~lIN~sR 133 (197)
T d1j4aa1 100 ISLHV--PDVPA--NVHMI--NDESI-------AKM-KQDVVIVNVSR 133 (197)
T ss_dssp EEECS--CCCGG--GTTCB--SHHHH-------HHS-CTTEEEEECSC
T ss_pred ccccC--Ccccc--ccccc--cHHHH-------hhh-CCccEEEecCc
Confidence 99863 22111 11111 22222 232 47899999974
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.79 E-value=0.11 Score=45.02 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|+||+|||| |..|.++|..|.+.|+
T Consensus 1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi 25 (288)
T d3c96a1 1 PIDILIAGA-GIGGLSCALALHQAGI 25 (288)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC
Confidence 689999995 9999999999999875
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=89.70 E-value=2.1 Score=37.17 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchh-hhHHHHHHHhhhhcCCCcceEEE-ecC--c-----
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKI-GIN--P----- 166 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~-~~l~g~a~DL~d~~~~~~~~v~i-~~~--~----- 166 (405)
-+.+.|+||++.||..++..|+..|. .|.+ .|++. +.++....++. .++.. ..| +
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga-----~V~~----~~~~~~~~~~~~~~~~g-------~~~~~~~~Dvs~~~~v~ 68 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGA-----DIAI----ADLVPAPEAEAAIRNLG-------RRVLTVKCDVSQPGDVE 68 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSCCHHHHHHHHHTT-------CCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCchHHHHHHHHHcC-------CcEEEEEeeCCCHHHHH
Confidence 35788999999999999999999886 2554 23332 22222222221 11111 111 1
Q ss_pred ------ccccCCCcEEEEeCCcCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 167 ------YELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 167 ------~eal~dADiVIi~~g~~~-k~g--~~r~---~ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
.+.+-.-|++|..+|... ++- .+.. ..++.| ..+.+.+.+.+.+. ..+.||+++--
T Consensus 69 ~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Iv~isS~ 140 (247)
T d2ew8a1 69 AFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN--GWGRIINLTST 140 (247)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhc--CCCCccccccc
Confidence 233567899998877532 221 1222 223444 34566677777774 46888888743
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.64 E-value=0.36 Score=42.25 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHH---HHHHHhhhhcCCCcceEEEecCcccccCC
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFED 172 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~~~~~eal~d 172 (405)
.+++.|+||++.||..++..|++.|. .|.+ .+++.+.++ ....|+.+.. ... .+.....+.+..
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~~~~~~~~~~Dv~~~~-~v~---~~~~~~~~~~g~ 73 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGH-----KVAV----THRGSGAPKGLFGVEVDVTDSD-AVD---RAFTAVEEHQGP 73 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESSSCCCTTSEEEECCTTCHH-HHH---HHHHHHHHHHSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCcchhcCceEEEEecCCHH-HHH---HHHHHHHHhcCC
Confidence 46899999999999999999999885 2444 233322222 1112221110 000 000112345567
Q ss_pred CcEEEEeCCcCC-CC--CCchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 173 AEWALLIGAKPR-GP--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 173 ADiVIi~~g~~~-k~--g~~r~---~ll~~N~----~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
-|++|..+|... ++ ..+.. ..++.|+ .+.+...+.+.+. ..+.||+++--.
T Consensus 74 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~Iv~isS~~ 134 (237)
T d1uzma1 74 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN--KFGRMIFIGSVS 134 (237)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC
T ss_pred ceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--CCCceEEEcchh
Confidence 899998877532 22 11222 2344443 3456667777774 567888877443
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.62 E-value=0.8 Score=39.44 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=23.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
-||.|+||+|.+|..++..|++.|.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~ 27 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGY 27 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC
Confidence 4899999999999999999999875
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=89.61 E-value=1.1 Score=38.95 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=62.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccc-cchhhhHHHHHHHhhhhcCCCcceEEEec-C--c--
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMELEDSLFPLLREVKIGI-N--P-- 166 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~-d~~~~~l~g~a~DL~d~~~~~~~~v~i~~-~--~-- 166 (405)
|++...|.|+||+|.||..++..|++.|.- .|.| +.- +.+.+.++....++.... .++.+.. | +
T Consensus 6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~----~vvl--~~R~~~~~~~~~~~~~~l~~~g----~~v~~~~~Dv~d~~ 75 (259)
T d2fr1a1 6 WKPTGTVLVTGGTGGVGGQIARWLARRGAP----HLLL--VSRSGPDADGAGELVAELEALG----ARTTVAACDVTDRE 75 (259)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCS----EEEE--EESSGGGSTTHHHHHHHHHHTT----CEEEEEECCTTCHH
T ss_pred cCCcCEEEEECCCcHHHHHHHHHHHHCCCC----EEEE--EeCCccCHHHHHHHHHHHHhcc----ccccccccccchHH
Confidence 566678999999999999999999998751 2443 211 223344555555554321 1232221 1 1
Q ss_pred -----cccc---CCCcEEEEeCCcCCCCCC---chh---hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 015501 167 -----YELF---EDAEWALLIGAKPRGPGM---ERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (405)
Q Consensus 167 -----~eal---~dADiVIi~~g~~~k~g~---~r~---~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt 222 (405)
.+.+ -..|.|+..+|....... +.. ..+.-|..-...+.+.+... +.+.+++++
T Consensus 76 ~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~--~~~~iv~~S 143 (259)
T d2fr1a1 76 SVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL--DLTAFVLFS 143 (259)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS--CCSEEEEEE
T ss_pred HHHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc--CCceEeeec
Confidence 1112 246677777664332211 111 12345555555555555543 456666666
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.41 E-value=0.64 Score=37.77 Aligned_cols=70 Identities=24% Similarity=0.244 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 96 MVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGAaG~--VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
-.||++||=..+ |..+++..+..-|. .+.+ +. .+.....-+ ... + ....+++++.+..+++++|
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~-----~~~~-~~-p~~~~~~~~-~~~---~---~~~~~~~~~~d~~eai~~a 68 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFRP-----KLVY-LI-SPQLLRARK-EIL---D---ELNYPVKEVENPFEVINEV 68 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSCC-----SEEE-EE-CCGGGCCCH-HHH---T---TCCSCEEEESCGGGTGGGC
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcCC-----eeEE-Ee-cccccccch-hhc---c---cCCCeEEEEeCHHHHhhcC
Confidence 479999994223 78888877776543 2222 11 111111101 111 1 1224678888999999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|..+
T Consensus 69 Dvvy~~ 74 (153)
T d1pg5a2 69 DVLYVT 74 (153)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 998876
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.26 E-value=2.1 Score=34.17 Aligned_cols=119 Identities=12% Similarity=-0.031 Sum_probs=68.1
Q ss_pred hccCCCEEEEEcCC---CchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCccc
Q 015501 92 SWKKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE 168 (405)
Q Consensus 92 ~~~~~~KI~IIGAa---G~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~e 168 (405)
.+.+++.|+||||+ +..|+.++..|...|. .|.. +++..+. +. ...+..+..+
T Consensus 15 ~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~-----~v~p----VnP~~~~-------i~--------G~~~~~sl~d 70 (139)
T d2d59a1 15 ILTRYKKIALVGASPKPERDANIVMKYLLEHGY-----DVYP----VNPKYEE-------VL--------GRKCYPSVLD 70 (139)
T ss_dssp HHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC-----EEEE----ECTTCSE-------ET--------TEECBSSGGG
T ss_pred HHhcCCeEEEEeecCCCCCchHHHHHHHHHCCC-----EEEE----ECCcccc-------cC--------CCcccccccc
Confidence 35568899999986 5789999999998775 2332 3332111 11 1122233333
Q ss_pred ccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHCCCCCCCceee-c
Q 015501 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHA-L 247 (405)
Q Consensus 169 al~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~~~~k~s~~~~~k~ig~-g 247 (405)
.=..-|+|++... .+.+.++.+++.+. +..++++..+.=.+.....+.+ . ++ +++|- |
T Consensus 71 lp~~iD~v~i~vp----------------~~~~~~~~~e~~~~-g~k~v~~~~G~~~ee~~~~a~~-~-gi--~vig~~C 129 (139)
T d2d59a1 71 IPDKIEVVDLFVK----------------PKLTMEYVEQAIKK-GAKVVWFQYNTYNREASKKADE-A-GL--IIVANRC 129 (139)
T ss_dssp CSSCCSEEEECSC----------------HHHHHHHHHHHHHH-TCSEEEECTTCCCHHHHHHHHH-T-TC--EEEESCC
T ss_pred cCccceEEEEEeC----------------HHHHHHHHHHHHHh-CCCEEEEeccccCHHHHHHHHH-C-CC--EEEcCCc
Confidence 3336788887632 34555566655665 3666655555444555555543 3 34 67775 6
Q ss_pred chhhHHHH
Q 015501 248 TRLDENRA 255 (405)
Q Consensus 248 t~LDs~R~ 255 (405)
.+.+..||
T Consensus 130 ~~v~~~rl 137 (139)
T d2d59a1 130 MMREHERL 137 (139)
T ss_dssp HHHHHHHH
T ss_pred Chhhhhhh
Confidence 66666664
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.25 E-value=0.51 Score=41.51 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEE-EecC----------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~~~---------- 165 (405)
+.+.|+||++.||.+++..|++.|. .+.+. ..++.+.++....++.+.. . ++. +..|
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~Vvi~---~~~~~~~~~~~~~~~~~~g-~---~~~~~~~D~~~~~~v~~~ 74 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGA-----SVVVN---YGSSSKAAEEVVAELKKLG-A---QGVAIQADISKPSEVVAL 74 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEE---cCCChHHHHHHHHHHHHcC-C---CceEecCCCCCHHHHHHH
Confidence 5788999999999999999999886 24442 2345555665666555432 1 111 1111
Q ss_pred ---cccccCCCcEEEEeCCc
Q 015501 166 ---PYELFEDAEWALLIGAK 182 (405)
Q Consensus 166 ---~~eal~dADiVIi~~g~ 182 (405)
..+.+-.-|++|..+|.
T Consensus 75 ~~~~~~~~g~idilinnag~ 94 (259)
T d1ja9a_ 75 FDKAVSHFGGLDFVMSNSGM 94 (259)
T ss_dssp HHHHHHHHSCEEEEECCCCC
T ss_pred HHHHHHHcCCCcEEEecccc
Confidence 12344568888887764
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.18 E-value=1.9 Score=37.54 Aligned_cols=113 Identities=5% Similarity=0.012 Sum_probs=63.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecC-------ccccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYELF 170 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~-------~~eal 170 (405)
...|+||++.+|..+|..|++.|. .|.+ .|++.+.++.... +...... .++.-..+ ..+.+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-----~V~i----~~r~~~~~~~~~~-~~~~~~~--~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-----TVAC----HDESFKQKDELEA-FAETYPQ--LKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-----EEEE----CCGGGGSHHHHHH-HHHHCTT--SEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHh-hhCcEEE--eccCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999885 3555 4555555443322 1111111 11111111 23445
Q ss_pred CCCcEEEEeCCcC--CCCCC--chhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCc
Q 015501 171 EDAEWALLIGAKP--RGPGM--ERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (405)
Q Consensus 171 ~dADiVIi~~g~~--~k~g~--~r~~---ll~~N----~~i~~~i~~~i~~~a~p~a~vIvvtNP 224 (405)
-.-|++|..+|.. .+|-. +..+ .++.| ..+.+.+.+.|.+. ..+.||+++--
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~IV~isS~ 132 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR--KSGHIIFITSA 132 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCS
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccc--ccceeeccccc
Confidence 5789999876642 23321 2222 22333 34567777888774 46777777743
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=89.10 E-value=0.14 Score=44.32 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
...||+|||| |..|.++|..|...|+
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~ 28 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGV 28 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCC
Confidence 3579999995 9999999999999875
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=89.00 E-value=0.23 Score=42.67 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=58.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec------------
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------------ 164 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~------------ 164 (405)
+||.||| .|..|..++..+...++-+ +.+..++.|. +.|. ... ...++.+..
T Consensus 1 ~kI~viG-vGGaG~n~v~~l~~~~~~~----v~~iainTD~--~~L~-------~~~--a~~ki~iG~~~t~G~G~g~~p 64 (194)
T d1w5fa1 1 LKIKVIG-VGGAGNNAINRMIEIGIHG----VEFVAVNTDL--QVLE-------ASN--ADVKIQIGENITRGLGAGGRP 64 (194)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHHCCTT----EEEEEEESCH--HHHH-------TCC--CSEEEECCTTTTTTSCCTTCH
T ss_pred CeEEEEE-eCchHHHHHHHHHHcCCCc----eEEEEEcCCH--HHHh-------cCC--cceEEecccccCCCcccccCc
Confidence 5899999 6999999999999887633 5554444432 3222 111 111222221
Q ss_pred ------------CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 165 ------------NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 165 ------------~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
...+.+.++|+||+++|.- |.+. .--.+++.++++... --.|-++|=|.
T Consensus 65 ~~g~~aa~e~~~~I~~~l~~~d~vfi~AGlG---GgTG----tgaapviA~~ake~g-----~lvv~ivtlPF 125 (194)
T d1w5fa1 65 EIGEQAALESEEKIREVLQDTHMVFITAGFG---GGTG----TGASPVIAKIAKEMG-----ILTVAIVTTPF 125 (194)
T ss_dssp HHHHHHHHHTHHHHHHHTTTCSEEEEEEETT---SSHH----HHHHHHHHHHHHHTT-----CEEEEEEEECC
T ss_pred hhhHhHHHHHHHHHHHHhcCCCeEEEEEecC---CCcc----cchHHHHHHHHHHcC-----CceEEEEeech
Confidence 1356789999999987642 2221 112567777766432 12455666675
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=88.91 E-value=0.15 Score=44.90 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER 137 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~ 137 (405)
..||.|+|+ |.+|++++..|+..|+ + .|.++|.|.
T Consensus 30 ~~~VliiG~-GglGs~va~~La~~Gv-g-----~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGL-GGLGCAASQYLASAGV-G-----NLTLLDFDT 64 (247)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTC-S-----EEEEECCCB
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC-C-----eEEEECCcc
Confidence 369999995 9999999999999987 2 344555554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=88.87 E-value=0.13 Score=45.27 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
.+++||+|||| |..|.+.|..|.+.|+
T Consensus 28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G~ 54 (370)
T d2iida1 28 SNPKHVVIVGA-GMAGLSAAYVLAGAGH 54 (370)
T ss_dssp SSCCEEEEECC-BHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHHCCC
Confidence 45789999995 9999999999999875
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=88.83 E-value=0.29 Score=40.19 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
+|++|+|+|++|.||.....-+-+.. ..+.+..+-...|-+.|..++.++
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~-----d~f~v~~lsa~~N~~~L~~q~~ef 50 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNL-----DRYQVIALTANRNVKDLADAAKRT 50 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTG-----GGEEEEEEEESSCHHHHHHHHHHT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCC-----CCcEEEEEEeCCCHHHHHHHHHhh
Confidence 47899999999999999877666532 124444444566767777676654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.69 E-value=0.15 Score=42.22 Aligned_cols=25 Identities=28% Similarity=0.093 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.||+|||| |..|...|..|.+.|+
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~ 28 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGY 28 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCC
Confidence 579999995 9999999999999876
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.64 E-value=0.1 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|||+|||| |-+|.+.|+.|++.+.
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHT
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCC
Confidence 79999995 9999999999998764
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.39 E-value=0.76 Score=37.90 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
--+|.|+|| |.||...+..+...|.- .|.. +|+++++++ .+.++
T Consensus 29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga~----~Vi~----~~~~~~~~~-~a~~l 72 (182)
T d1vj0a2 29 GKTVVIQGA-GPLGLFGVVIARSLGAE----NVIV----IAGSPNRLK-LAEEI 72 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTBS----EEEE----EESCHHHHH-HHHHT
T ss_pred CCEEEEECC-Cccchhheecccccccc----cccc----ccccccccc-ccccc
Confidence 478999995 99999888877776641 2443 577777765 55554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.18 E-value=0.67 Score=38.34 Aligned_cols=47 Identities=13% Similarity=-0.038 Sum_probs=31.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
.++--+|.|+|| |.||...+..+...+. ..|.. +|.++++++ .+.++
T Consensus 25 ~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga----~~Vi~----~d~~~~r~~-~a~~l 71 (174)
T d1jqba2 25 IEMGSSVVVIGI-GAVGLMGIAGAKLRGA----GRIIG----VGSRPICVE-AAKFY 71 (174)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHTTTC----SCEEE----ECCCHHHHH-HHHHH
T ss_pred CCCCCEEEEEcC-Ccchhhhhhhhhcccc----ccccc----ccchhhhHH-HHHhh
Confidence 355679999995 9999988777776554 13443 566667655 44444
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.13 E-value=0.15 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
|||+|||| |..|.+.|..|.+.|.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~ 24 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGT 24 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCC
Confidence 68999995 9999999999999875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=88.11 E-value=0.91 Score=37.44 Aligned_cols=46 Identities=20% Similarity=0.085 Sum_probs=32.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL 149 (405)
++-.+|.|+|| |.+|...+..+...+.. .|.. +|.++++++ .+.++
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~----~Vi~----~d~~~~kl~-~a~~l 71 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGAS----RIIG----VGTHKDKFP-KAIEL 71 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCS----EEEE----ECSCGGGHH-HHHHT
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCc----eeec----cCChHHHHH-HHHHc
Confidence 45578999995 99999988888776642 3443 567777776 55544
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.4 Score=40.43 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=51.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-.+|+|+| .|.||..++..+...++ .+.. .|+.... ... ...-..+..+.++.||+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~-----~v~~----~d~~~~~-------------~~~-~~~~~~~l~ell~~sDi 99 (188)
T d1sc6a1 44 GKKLGIIG-YGHIGTQLGILAESLGM-----YVYF----YDIENKL-------------PLG-NATQVQHLSDLLNMSDV 99 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----ECSSCCC-------------CCT-TCEECSCHHHHHHHCSE
T ss_pred ceEEEEee-cccchhhhhhhcccccc-----eEee----ccccccc-------------hhh-hhhhhhhHHHHHhhccc
Confidence 47999999 59999999998876554 2332 2332110 000 01112356788899999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtN 223 (405)
|++... ..+. ++ .+ -|.+. ++.. ++++++||++=
T Consensus 100 i~i~~p--lt~~-T~-~l--i~~~~-------l~~m-k~~a~lIN~aR 133 (188)
T d1sc6a1 100 VSLHVP--ENPS-TK-NM--MGAKE-------ISLM-KPGSLLINASR 133 (188)
T ss_dssp EEECCC--SSTT-TT-TC--BCHHH-------HHHS-CTTEEEEECSC
T ss_pred eeeccc--CCcc-hh-hh--ccHHH-------HhhC-CCCCEEEEcCc
Confidence 998742 2111 11 11 12222 3333 58999999984
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=87.75 E-value=0.42 Score=39.27 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=34.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
|+||+|.|++|+||...+.-+-+.. ..+.+..+-...|-+.+..++.++.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~-----d~f~v~~Lsa~~N~~~L~~q~~~f~ 50 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNP-----EHFRVVALVAGKNVTRMVEQCLEFS 50 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCT-----TTEEEEEEEESSCHHHHHHHHHHHC
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCC-----CCcEEEEEEecCcHHHHHHHHHHHh
Confidence 6789999999999999877666542 1233434445667777777776653
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=87.44 E-value=2.3 Score=37.00 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEE-ecC---c----
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---P---- 166 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~~~---~---- 166 (405)
+-+.|.|+||++.||..+|..|+..|. .+.+. .++.+.++... ++.... +- .++.. ..| +
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G~-----~vii~----~r~~~~~~~~~-~~~~~~-~~-~~~~~~~~d~~~~~~~~ 71 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRNL-----KNFVI----LDRVENPTALA-ELKAIN-PK-VNITFHTYDVTVPVAES 71 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC-----SEEEE----EESSCCHHHHH-HHHHHC-TT-SEEEEEECCTTSCHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-----EEEEE----ECCcccHHHHH-HHHhhC-CC-CCEEEEEeecCCCHHHH
Confidence 346899999999999999999999886 24331 12222333222 222111 11 11111 111 1
Q ss_pred -------ccccCCCcEEEEeCCcCCCCCCchhhhHHhhH----HHHHHHHHHHHhhc-CCCeEEEEeCC
Q 015501 167 -------YELFEDAEWALLIGAKPRGPGMERAGLLDING----QIFAEQGKALNAVA-SRNVKVIVVGN 223 (405)
Q Consensus 167 -------~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~----~i~~~i~~~i~~~a-~p~a~vIvvtN 223 (405)
.+.+...|++|..+|.......+ ..++.|. ...+.+.+.+.+.. ++.+.||+++-
T Consensus 72 ~~~~~~~~~~~g~iDilvnnAG~~~~~~~~--~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS 138 (254)
T d1sbya1 72 KKLLKKIFDQLKTVDILINGAGILDDHQIE--RTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS 138 (254)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCTTCHH--HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEeCCCCCCHHHHH--HHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence 23346789999988754322212 2344443 35666667775432 24678887763
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=87.14 E-value=0.47 Score=41.44 Aligned_cols=27 Identities=26% Similarity=0.099 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCc--hHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGM--IANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~--VGs~la~~L~~~~~ 121 (405)
+-+++.|+||+|. ||.++|..|+..|.
T Consensus 5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga 33 (268)
T d2h7ma1 5 DGKRILVSGIITDSSIAFHIARVAQEQGA 33 (268)
T ss_dssp TTCEEEECCCSSTTCHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3468999997665 99999999999885
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.86 E-value=1.2 Score=36.87 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=34.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhh
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~ 150 (405)
++--.|.|+|+ |.+|...+..+...+.. .|.. +|.++++++ .+.++-
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~----~Vi~----vd~~~~kl~-~Ak~~G 74 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGAS----RIIG----IDLNKDKFE-KAMAVG 74 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----ECSCGGGHH-HHHHHT
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCc----eEEE----ecCcHHHHH-HHHhcC
Confidence 34567999995 99999998888876652 3443 577778877 666653
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=86.64 E-value=1.1 Score=39.17 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=44.4
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcc-eEEEec--------
Q 015501 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR-EVKIGI-------- 164 (405)
Q Consensus 96 ~~KI~IIGAaG--~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~-~v~i~~-------- 164 (405)
-+++.|+||+| .||.++|..|+..|. .|.+ .+++++ ++..+.++......... ...++.
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga-----~V~i----~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~ 74 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGA-----TLAF----TYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLY 74 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC-----EEEE----EESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHH
Confidence 46899999877 599999999999886 3555 344432 33344444433211110 000100
Q ss_pred -CcccccCCCcEEEEeCCc
Q 015501 165 -NPYELFEDAEWALLIGAK 182 (405)
Q Consensus 165 -~~~eal~dADiVIi~~g~ 182 (405)
...+.+...|++|..++.
T Consensus 75 ~~~~~~~g~id~lV~nag~ 93 (274)
T d2pd4a1 75 NSVKKDLGSLDFIVHSVAF 93 (274)
T ss_dssp HHHHHHTSCEEEEEECCCC
T ss_pred HHHHHHcCCCCeEEeeccc
Confidence 123455678888887664
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.51 E-value=0.65 Score=39.79 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=59.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEec-------------
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------------- 164 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~------------- 164 (405)
+|-||| -|..|..++..+...++- .+.+.-++.|. +.|. ... ...++.+..
T Consensus 3 ~IkViG-vGGaG~n~vn~~~~~~~~----~v~~iainTD~--~~L~-------~~~--~~~ki~iG~~~t~G~Gagg~p~ 66 (198)
T d1rq2a1 3 VIKVVG-IGGGGVNAVNRMIEQGLK----GVEFIAINTDA--QALL-------MSD--ADVKLDVGRDSTRGLGAGADPE 66 (198)
T ss_dssp CEEEEE-EHHHHHHHHHHHHHTTCC----SEEEEEEESCH--HHHH-------HCC--CSEEEECCTTTC-----CCCHH
T ss_pred eEEEEE-eCchHHHHHHHHHHcCCC----CceEEEEcchH--HHHh-------cCC--cchhhccccccccCCCcCcChh
Confidence 678999 699999999999988763 25554444432 2222 111 111222211
Q ss_pred -----------CcccccCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCch
Q 015501 165 -----------NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (405)
Q Consensus 165 -----------~~~eal~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~ 225 (405)
...+.++++|+||+++|.- |.+.. --+|++.++++.+.. -.|-++|-|-
T Consensus 67 ~g~~aa~e~~~~I~~~l~~~d~vfi~AGlG---GgTGt----GaaPviA~iake~g~-----l~v~ivt~PF 126 (198)
T d1rq2a1 67 VGRKAAEDAKDEIEELLRGADMVFVTAGEG---GGTGT----GGAPVVASIARKLGA-----LTVGVVTRPF 126 (198)
T ss_dssp HHHHHHHHTHHHHHHHHTTCSEEEEEEETT---SSHHH----HHHHHHHHHHHHHTC-----EEEEEEEECC
T ss_pred hhHhhHHHHHHHHHHHhcCCCEEEEEEecC---CCCCc----chHHHHHHHHHHcCC-----cEEEEEecCh
Confidence 1357889999999988742 22221 226888888876532 2456677774
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=86.20 E-value=1.3 Score=32.65 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=44.4
Q ss_pred CEEEEEcCCCchHHH-HHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 97 VNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~-la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
|||-+|| -|.+|.+ +|..|...|. .|.= +|..... ....|++... ++.. ..+.+.++++|+
T Consensus 2 ~~ihfiG-IgG~GMs~LA~~L~~~G~-----~VsG----SD~~~~~---~t~~L~~~Gi----~i~~-gh~~~~i~~~d~ 63 (89)
T d1j6ua1 2 MKIHFVG-IGGIGMSAVALHEFSNGN-----DVYG----SNIEETE---RTAYLRKLGI----PIFV-PHSADNWYDPDL 63 (89)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTC-----EEEE----ECSSCCH---HHHHHHHTTC----CEES-SCCTTSCCCCSE
T ss_pred cEEEEEe-ECHHHHHHHHHHHHhCCC-----eEEE----EeCCCCh---hHHHHHHCCC----eEEe-eecccccCCCCE
Confidence 7899999 5888875 8899998886 2443 4544322 1223444321 2222 346677899999
Q ss_pred EEEeCCcC
Q 015501 176 ALLIGAKP 183 (405)
Q Consensus 176 VIi~~g~~ 183 (405)
||.+.+.|
T Consensus 64 vV~SsAI~ 71 (89)
T d1j6ua1 64 VIKTPAVR 71 (89)
T ss_dssp EEECTTCC
T ss_pred EEEecCcC
Confidence 99987765
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.14 E-value=0.21 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||+|||| |.+|.++|..|...|+
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~ 26 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGI 26 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCC
Confidence 8999996 9999999999999886
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.03 E-value=0.42 Score=41.53 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=36.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhh
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d 151 (405)
-+.+.|+||++.+|.+++..|++.|. .|.+ .+++.+.++..+.++..
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~ 51 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGA-----SAVL----LDLPNSGGEAQAKKLGN 51 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EECTTSSHHHHHHHHCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHhCC
Confidence 35677999999999999999999886 2554 46677778777776643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.90 E-value=1.6 Score=35.26 Aligned_cols=130 Identities=15% Similarity=0.041 Sum_probs=67.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEe-cC---cccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---PYEL 169 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-~~---~~ea 169 (405)
++-.+|.|+|+ |.||...+..+...|. ..|. .+.+.++++ .+.++-. +..+. .+ ....
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga----~~i~-----~~~~~~~~~-~a~~lGa-------d~~i~~~~~~~~~~~ 90 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGA----HVVA-----FTTSEAKRE-AAKALGA-------DEVVNSRNADEMAAH 90 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC----EEEE-----EESSGGGHH-HHHHHTC-------SEEEETTCHHHHHTT
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccc----cchh-----hccchhHHH-HHhccCC-------cEEEECchhhHHHHh
Confidence 44579999995 9999988877776654 1233 344445543 4444421 11121 11 2334
Q ss_pred cCCCcEEEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCchhHHHH-HHHHHCCCCCCCceee--
Q 015501 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL-ICLKNAPSIPAKNFHA-- 246 (405)
Q Consensus 170 l~dADiVIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvtNP~d~~t~-~~~k~s~~~~~k~ig~-- 246 (405)
.++.|++|.+.|.+. + + -..++-. .+.|.++.++-|.+.... ...... .-..+++|.
T Consensus 91 ~~~~D~vid~~g~~~------------~---~---~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~l~-~k~~~i~Gs~~ 150 (168)
T d1uufa2 91 LKSFDFILNTVAAPH------------N---L---DDFTTLL-KRDGTMTLVGAPATPHKSPEVFNLI-MKRRAIAGSMI 150 (168)
T ss_dssp TTCEEEEEECCSSCC------------C---H---HHHHTTE-EEEEEEEECCCC-------CHHHHH-TTTCEEEECCS
T ss_pred cCCCceeeeeeecch------------h---H---HHHHHHH-hcCCEEEEeccCCCCcccccHHHHH-HCCcEEEEEee
Confidence 568999998765321 0 1 1122333 478999999876543221 111111 011255664
Q ss_pred cchhhHHHHHHHHHH
Q 015501 247 LTRLDENRAKCQLAL 261 (405)
Q Consensus 247 gt~LDs~R~~~~lA~ 261 (405)
++.-|..++-.++++
T Consensus 151 ~~~~d~~e~l~l~a~ 165 (168)
T d1uufa2 151 GGIPETQEMLDFCAE 165 (168)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 566666666666554
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.72 E-value=0.32 Score=38.63 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=25.2
Q ss_pred hhccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 91 KSWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 91 ~~~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+.+.+..+|+|||| |.+|..+|..|...+.
T Consensus 30 ~~~~~~k~v~VIGg-G~iG~E~A~~l~~~g~ 59 (133)
T d1q1ra2 30 RQLIADNRLVVIGG-GYIGLEVAATAIKANM 59 (133)
T ss_dssp HTCCTTCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred HhhccCCEEEEECC-chHHHHHHHHHHhhCc
Confidence 34456789999995 9999999999998764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.59 E-value=0.27 Score=41.95 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+||+|||| |..|.+.|+.|++.|+
T Consensus 2 KkV~IIGa-G~aGL~aA~~La~~G~ 25 (373)
T d1seza1 2 KRVAVIGA-GVSGLAAAYKLKIHGL 25 (373)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTSC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC
Confidence 58999995 9999999999998775
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.08 E-value=0.99 Score=36.10 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+-++|.|||| |.+|..-+..|+..|.
T Consensus 12 ~gkrvLViGg-G~va~~ka~~Ll~~GA 37 (150)
T d1kyqa1 12 KDKRILLIGG-GEVGLTRLYKLMPTGC 37 (150)
T ss_dssp TTCEEEEEEE-SHHHHHHHHHHGGGTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC
Confidence 3579999996 9999999999998774
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.00 E-value=0.74 Score=38.19 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCCcE
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dADi 175 (405)
-++++|+| .|.||..+|..+...+. .+.+ ++.|+. ..+++. || .+ .+ ....+++..+|+
T Consensus 24 Gk~v~V~G-yG~iG~g~A~~~rg~G~-----~V~v--~e~dp~-~al~A~-~d------G~----~v-~~~~~a~~~adi 82 (163)
T d1li4a1 24 GKVAVVAG-YGDVGKGCAQALRGFGA-----RVII--TEIDPI-NALQAA-ME------GY----EV-TTMDEACQEGNI 82 (163)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--ECSCHH-HHHHHH-HT------TC----EE-CCHHHHTTTCSE
T ss_pred CCEEEEec-cccccHHHHHHHHhCCC-----eeEe--eecccc-hhHHhh-cC------ce----Ee-eehhhhhhhccE
Confidence 47999999 69999999999998775 2443 334432 223222 32 22 11 246799999999
Q ss_pred EEEeCCcCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CchhHHHHHHHHH
Q 015501 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKN 235 (405)
Q Consensus 176 VIi~~g~~~k~g~~r~~ll~~N~~i~~~i~~~i~~~a~p~a~vIvvt-NP~d~~t~~~~k~ 235 (405)
||.+-|... -.. .+.+++. +.++++.|++ -..++-...+.+.
T Consensus 83 vvtaTGn~~--vI~---------------~eh~~~M-KdgaIL~N~Ghfd~EId~~~L~~~ 125 (163)
T d1li4a1 83 FVTTTGCID--IIL---------------GRHFEQM-KDDAIVCNIGHFDVEIDVKWLNEN 125 (163)
T ss_dssp EEECSSCSC--SBC---------------HHHHTTC-CTTEEEEECSSSTTSBCHHHHHHH
T ss_pred EEecCCCcc--chh---------------HHHHHhc-cCCeEEEEeccccceecHHHHhhc
Confidence 988654211 011 1233343 4678888887 3344444444443
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.69 E-value=0.22 Score=42.11 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc
Q 015501 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (405)
Q Consensus 96 ~~KI~IIGAaG~VGs~la~~L~~~~ 120 (405)
|.||+|.| .|.||..++..|.+.+
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~ 24 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQP 24 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCT
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCC
Confidence 78999999 6999999999988764
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=84.49 E-value=0.22 Score=38.81 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=23.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 93 ~~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++++.||+|||| |.+|--+|..|...|.
T Consensus 19 l~~p~~v~IiGg-G~iG~E~A~~l~~~g~ 46 (117)
T d1onfa2 19 IKESKKIGIVGS-GYIAVELINVIKRLGI 46 (117)
T ss_dssp CCCCSEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred cCCCCEEEEECC-chHHHHHHHHHHhccc
Confidence 455889999995 9999999999987653
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.43 E-value=0.33 Score=40.17 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 015501 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 98 KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
||+|||| |..|.+.|..|.+.|+
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~ 24 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGI 24 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTC
T ss_pred CEEEECC-cHHHHHHHHHHHhCCC
Confidence 7999995 9999999999999875
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.36 E-value=0.34 Score=44.13 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+++||+|||| |..|.+.|..|...|.
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~ 26 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGH 26 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCC
Confidence 4689999995 9999999999998764
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.05 E-value=0.27 Score=41.70 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+|.||+|||| |.-|.+.|..|...|.
T Consensus 1 rp~~VaVIGa-GpaGL~aA~~L~~~G~ 26 (239)
T d1lqta2 1 RPYYIAIVGS-GPSAFFAAASLLKAAD 26 (239)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECc-CHHHHHHHHHHHHcCC
Confidence 4679999995 9999999999998874
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.81 E-value=0.95 Score=39.41 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=22.6
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAG--MIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG--~VGs~la~~L~~~~~ 121 (405)
-+++.|+||+| .+|..++..|+..|.
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga 35 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGA 35 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCC
Confidence 46789999877 699999999999885
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.52 E-value=0.42 Score=41.21 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 94 ~~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
++..||+|||| |.-|-+.|..|.+.|+
T Consensus 3 ~~~~kViVIGa-G~aGL~aA~~L~~~G~ 29 (449)
T d2dw4a2 3 KKTGKVIIIGS-GVSGLAAARQLQSFGM 29 (449)
T ss_dssp SCCCEEEEECC-BHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHhCCC
Confidence 45679999995 9999999999999875
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=82.33 E-value=2.3 Score=34.36 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=39.4
Q ss_pred CCEEEEEcC--CCchHHHHHHHHHhcccCCCCCceEEEeccccchhhhHHHHHHHhhhhcCCCcceEEEecCcccccCCC
Q 015501 96 MVNIAVSGA--AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (405)
Q Consensus 96 ~~KI~IIGA--aG~VGs~la~~L~~~~~~~~d~~i~L~l~~~d~~~~~l~g~a~DL~d~~~~~~~~v~i~~~~~eal~dA 173 (405)
-+||+++|= -|.|..+++..+..-|. ++.+ ..+ ..+. . -...+.+..+..+++++|
T Consensus 3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~-----~~~i----~~P--~~~~---~--------~~~~~~~~~~~~ea~~~a 60 (151)
T d2at2a2 3 GLTVSIHGDIKHSRVARSNAEVLTRLGA-----RVLF----SGP--SEWQ---D--------EENTFGTYVSMDEAVESS 60 (151)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHcCC-----cccc----cCC--chhh---c--------cccceeEEEechhccccC
Confidence 479999994 25699998888877543 2332 222 1111 0 111345666788999999
Q ss_pred cEEEEe
Q 015501 174 EWALLI 179 (405)
Q Consensus 174 DiVIi~ 179 (405)
|+|..+
T Consensus 61 Dviy~~ 66 (151)
T d2at2a2 61 DVVMLL 66 (151)
T ss_pred ceeeee
Confidence 999875
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=81.93 E-value=1.6 Score=37.21 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
+-++|+|-| .|+||+.++..|...|.
T Consensus 26 ~gk~v~IqG-~G~VG~~~A~~L~~~Ga 51 (201)
T d1c1da1 26 DGLTVLVQG-LGAVGGSLASLAAEAGA 51 (201)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence 347999999 69999999999999875
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=81.33 E-value=0.49 Score=41.06 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 015501 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (405)
Q Consensus 97 ~KI~IIGAaG~VGs~la~~L~~~~~ 121 (405)
-.|.|||| |-+|.+.|+.|++.|.
T Consensus 5 ~DvvIIGa-Gi~Gls~A~~La~~G~ 28 (276)
T d1ryia1 5 YEAVVIGG-GIIGSAIAYYLAKENK 28 (276)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCC
Confidence 45999995 9999999999999874
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=81.32 E-value=1.7 Score=37.46 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.4
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhccc
Q 015501 96 MVNIAVSGAAG--MIANHLLFKLAAGEV 121 (405)
Q Consensus 96 ~~KI~IIGAaG--~VGs~la~~L~~~~~ 121 (405)
-++|.|+||+| .+|.++|..|++.|.
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~ 32 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGA 32 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCC
Confidence 46899999877 688999999999885
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.06 E-value=1.5 Score=37.59 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccC
Q 015501 95 KMVNIAVSGAAGMIANHLLFKLAAGEVL 122 (405)
Q Consensus 95 ~~~KI~IIGAaG~VGs~la~~L~~~~~~ 122 (405)
...||.||| .|.-|..++..|...++-
T Consensus 14 ~~~ki~ViG-vGGaG~n~v~~l~~~~~~ 40 (209)
T d2vapa1 14 TKAKITVVG-CGGAGNNTITRLKMEGIE 40 (209)
T ss_dssp TCCCEEEEE-EHHHHHHHHHHHHHHTCT
T ss_pred cCCcEEEEE-eCChHHHHHHHHHHcCCC
Confidence 357999999 699999999999988763
|