Citrus Sinensis ID: 015502

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHccccHHHHHHHccHHHHHHHHcccccccEEEEEEccccccEEEEccccccEEEccccccccccEEEEEEccEEEEEEcccccEEEEEccccccEEEccccccccccccEEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEEEcccccEEEccccccccccccccEEEEccEEEEEEEEcccccccccEEEEEEEcccccEEEEEccccccccccccccEEEEEccEEEEEEccccccccccEEEEEEEEEEcccEEEEEEEcHHHHcccccccccEEEEccccEEEEEEccccEEEEEEccccEEEEEccccccccccccEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccHEEcccccccccccccccccccccccccccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEEEEcccccccEEEcccccccccccccccccccEEEEEcccEEEEEEcccccEEEEEccccHcHcccccccccccccEEEEEEEEcccccEEEEEEEEccccccccccccEEEEEEccccccEEEccccccccccccccEEEEccEEEEEEEcccccccccccEEEEEEcccccEEEEEcccccccccccccccEEEEccEEEEEEEEEccccccccEEEEEEEEccccEEEEHcccHHHHHHHHcccccEEEEEcccEEEEEEccccEEEEEEccccEEEEcccccccccccccEEEEEEccccccccc
Coil and Loop (DISEMBL)
MDGETSWINHCIDDMARGINEFDSFlelsdegnkeastlsvdlilpDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSnvlsqkpwyfmftssdepigyaydpilrkwygielpcietsnwfiASSYGLVcfmdndsrselyvcnpiskswkkleeppglkfsdysalsLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIhiydsdtmMWVTSWKEVLTgwragdesiicDGVLYFLIYAtgggapenrhglisfnlssrssHALLIKsfipvpcaltcgrlmnlKEKLVMVggigkqdrpdiiKGIGIWVLNGKEWQEVARMPhkffqgfgefddvfassgtddliyIQSYGAPSLLVYDMNLkqwrwshkcpvtkrfplqlftgfcfeprleiap
Flexible Loop (DISEMBL)
MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKswkkleeppglKFSDYSALSLSVDRVSHRYTVSivkskqvtgnfFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVggigkqdrpdiIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTgfcfeprleiap
Low Complexity Region (SEG)
MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP
Disordered region (IsUnstruct)
******WINHCIDDMARGINEFDSFLELS******ASTLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPR*****
Disordered Region (DISOPRED)
*********************************************PDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIA*
Disordered Region (DISEMBL)
MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP
Disordered Region (DISPRO)
******WINH**DDMARGIN*****************TLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q9M310	411	F-box/kelch-repeat protei	yes	no	0.990	0.975	0.672	1e-164
Q9LFV5	448	F-box/kelch-repeat protei	no	no	0.817	0.738	0.283	1e-24
Q9FZK1	467	F-box only protein 6 OS=A	no	no	0.797	0.691	0.262	3e-23
Q39090	442	Protein UNUSUAL FLORAL OR	no	no	0.790	0.723	0.230	2e-16
Q9SMZ3	457	F-box only protein 13 OS=	no	no	0.856	0.759	0.217	6e-11
Q9FGY4	359	F-box protein At5g49610 O	no	no	0.496	0.559	0.25	2e-09
Q9FII1	563	F-box/kelch-repeat protei	no	no	0.365	0.262	0.251	5e-08
Q9FII2	563	F-box/kelch-repeat protei	no	no	0.365	0.262	0.251	5e-08
Q9LXZ3	367	F-box protein At3g56470 O	no	no	0.449	0.495	0.266	2e-06
O49279	374	SKP1-interacting partner	no	no	0.809	0.877	0.218	2e-06

>sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1

 Score =  577 bits (1486), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/415 (67%), Positives = 343/415 (82%), Gaps = 14/415 (3%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M+ ETSW N+    +   + E +S+ E SD+  K   T S+D +LPDDLLERIL++LPIA
Sbjct: 1   MEAETSWTNYPYSYITY-VPEAESYREQSDDEAK-VETFSMDSLLPDDLLERILSFLPIA 58

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSN-VLSQKPWYFMFTSSDEPIGYAYDPILRKWYGI 119
           SIFRAG VC+RW+EIVSSRRFL NFSN  +SQ+PWYFMFT++D+P GYAYDPI+RKWY  
Sbjct: 59  SIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTTDDPSGYAYDPIIRKWYSF 118

Query: 120 ELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS 179
           +LPCIETSNWF+ASS GLVCFMDND R+++YV NPI+K W+ L EPPG K +DY+A+S S
Sbjct: 119 DLPCIETSNWFVASSCGLVCFMDNDCRNKIYVSNPITKQWRTLIEPPGHKSTDYTAMSTS 178

Query: 180 VDRVSH-------RYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAG 232
           V+R +         Y+VSIVKSKQV GNFFQW+LSIH+Y S+TM W T   +VL+GWR G
Sbjct: 179 VNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLSIHLYSSETMTWTTLVNDVLSGWRGG 238

Query: 233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHAL--LIKSFIPVPCALTCGRL 290
           +ES+IC+ VLYF+IY+TGG   ++RHGLI+ NLSS  S +   L++SFIP+PC+LTCGRL
Sbjct: 239 NESVICNNVLYFMIYSTGGS--DHRHGLIASNLSSIGSPSSGILMRSFIPMPCSLTCGRL 296

Query: 291 MNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSG 350
           MNL+E+LV+VGGIGK DRP++IKGIGIWVL GKEW E+A+MP +FFQGFGEFD+VFASSG
Sbjct: 297 MNLRERLVIVGGIGKHDRPEVIKGIGIWVLKGKEWVEMAKMPQRFFQGFGEFDEVFASSG 356

Query: 351 TDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           TDDL+YIQSYG+P+LL +DMNLK WRWS KCPVTK+FPLQLFTGFCFEPRLEIAP
Sbjct: 357 TDDLVYIQSYGSPALLTFDMNLKYWRWSQKCPVTKKFPLQLFTGFCFEPRLEIAP 411

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 165/371 (44%), Gaps = 40/371 (10%)

Query: 44  ILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMF--TSS 101
           +LP+DLL  ILA +P   IFR   VC++W+ I+    FL   SNV S  P    F   S 
Sbjct: 106 MLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSP 165

Query: 102 DEPIGYAYDPILRKWYGIELPCIET-SNWFIASSYGLVCFMDNDSRS-ELYVCNPISKSW 159
             P    +   L+ WY I    +   + W + SS GLVCF   D  +    VCNP+ +SW
Sbjct: 166 QIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTLVCNPLMQSW 225

Query: 160 KKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWV 219
           + L   P + ++    L + VDR    + V  + +  + G+     L   +YDS T  W 
Sbjct: 226 RTL---PSMHYNQQRQLIMVVDRSDKSFKV--IATSDIYGDK---SLPTEVYDSKTDKW- 276

Query: 220 TSWKEVLTGWR-AGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSF 278
            S  +++        +   CD  LY    +          GL+ + L S     +  K  
Sbjct: 277 -SLHQIMPAVNLCSSKMAYCDSRLYLETLSP--------LGLMMYRLDSGQWEHIPAK-- 325

Query: 279 IPVPCALTCGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE--WQEVARMPHKF 335
              P +L  G L+   +++L +VG IG       ++ + IW L+  +  W E++RMP K+
Sbjct: 326 --FPRSLLDGYLVAGTQKRLFLVGRIGLY---STLQSMRIWELDHTKVSWVEISRMPPKY 380

Query: 336 FQGFGEFD-DVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTG 394
           F+       + F   G D+LI   S+     L+Y+++ K W W   C +         + 
Sbjct: 381 FRALLRLSAERFECFGQDNLICFTSWNQGKGLLYNVDKKIWSWISGCALQ-----SCNSQ 435

Query: 395 FCF-EPRLEIA 404
            CF EPR + +
Sbjct: 436 VCFYEPRFDAS 446

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 170/374 (45%), Gaps = 51/374 (13%)

Query: 45  LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEP 104
            P DL E +++ LP+A+ F+   VCR+W+ ++ S  F   F+ +    PW++  T  +  
Sbjct: 120 FPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVN 179

Query: 105 IGYAYDPILRKWYGIELPCIETSNWFI--ASSYGLVCFMDNDSRSELYVCNPISKSWKKL 162
            G  YDP L+KW+   +P +   +  +  AS+ GLVCF+D   R+  YV NP++KS+++L
Sbjct: 180 SGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHRN-FYVSNPLTKSFREL 238

Query: 163 EEPPGLKFSDYS----ALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMW 218
              P   F  +S     ++L+ +  SH Y V  V            E    +YDS + +W
Sbjct: 239 ---PARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGC----------EGEYEVYDSLSNVW 285

Query: 219 VTSWK-------EVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSH 271
                        VL  +++  + +     LYF++         +  G++S+++ S    
Sbjct: 286 TKRGTIPSNIKLPVLLNFKS--QPVAIHSTLYFML--------TDPEGILSYDMVSGKWK 335

Query: 272 ALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE--WQEVA 329
             +    IP P  L+   L    E+L++VG + K    +    + IW L      W+EV 
Sbjct: 336 QFI----IPGPPDLSDHTLAACGERLMLVGLLTK----NAATCVCIWELQKMTLLWKEVD 387

Query: 330 RMPHKF---FQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTK- 385
           RMP+ +   F G     +   + G   L+ ++S     L+ Y+   ++W     C V + 
Sbjct: 388 RMPNIWCLEFYGKHIRMNCLGNKGCLILLSLRSRQMNRLITYNAVTREWTKVPGCTVPRG 447

Query: 386 RFPLQLFTGFCFEP 399
           R  L +  G  F P
Sbjct: 448 RKRLWIACGTAFHP 461

Arabidopsis thaliana (taxid: 3702)

>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 153/365 (41%), Gaps = 45/365 (12%)

Query: 45  LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMF------ 98
           LP  LL+R++A+LP  + FR  CVC+R++ ++ S  FL  +  +L  +   F+F      
Sbjct: 50  LPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCFLFFKHKTL 109

Query: 99  ------------TSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS- 145
                         S++  G+ +DP   +WY +    I +  +   SS GLV ++  ++ 
Sbjct: 110 KSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAYIPSGFYPSGSSGGLVSWVSEEAG 169

Query: 146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWE 205
              + +CNP+  S  +L  PP  +   + ++ LSV   S   TV+      +   +    
Sbjct: 170 LKTILLCNPLVGSVSQL--PPISRPRLFPSIGLSVTPTSIDVTVA---GDDLISPYAVKN 224

Query: 206 LSIHIYDSDTMMWVTSWKEVLTGWR----AGDESIICDGVLYFLIYATGGGAPENRHGLI 261
           LS   +  D   + + W    +  R       + +   G  Y + Y+           ++
Sbjct: 225 LSSESFHVDAGGFFSLWAMTSSLPRLCSLESGKMVYVQGKFYCMNYSP--------FSVL 276

Query: 262 SFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVL- 320
           S+ ++        IK   P+   L    L+  K +L++V  + K  + ++ K + +W L 
Sbjct: 277 SYEVTGNR----WIKIQAPMRRFLRSPSLLESKGRLILVAAVEK-SKLNVPKSLRLWSLQ 331

Query: 321 -NGKEWQEVARMPHKFFQGFG--EFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW 377
            +   W E+ RMP   +  F   E    F   G  + + I   G    L++D+  K W W
Sbjct: 332 QDNATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWLW 391

Query: 378 SHKCP 382
              CP
Sbjct: 392 VPPCP 396

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Considered as a meristem identity factor required for normal growth of the young floral meristem. Acts together with LEAFY to positively regulate the B class floral homeotic genes APETALA3 and PISTILLATA. In this way, operates as a region-specific regulator for petal and stamen development. Alternatively, may play a role as a negative regulator of the C class floral homeotic genes. Interacts together with the SKP1-like protein ASK1 to form a ubiquitin E3 ligase complex and could indirectly promote the ubiquitination and degradation of specific proteins controlling the floral primordia development like repressors of B class floral homeotic genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMZ3|FBX13_ARATH F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 160/396 (40%), Gaps = 49/396 (12%)

Query: 45  LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEP 104
           L DD+LER+L++LP +  FR   VC+RW    +S+ F    S + ++ PW+FM  +    
Sbjct: 70  LNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDNDSNS 129

Query: 105 IGYAYDPILRKWYGIE----LPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWK 160
             + +D     W  +     L         +ASS GL+C+  + S  +  + NP++ S +
Sbjct: 130 SSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSIS-GDFLLRNPLTGSSR 188

Query: 161 KLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVT 220
            +            A++++   V+      +  S ++        LS  IY+S+   W  
Sbjct: 189 DIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTISGEIPN------LSFKIYESNADSW-- 240

Query: 221 SWKEVLTGWRAGDESIICD-----GVLYFL------IYATGG--GAPENRHGLISFNLSS 267
           S  + L   +  D S+  D     G +YFL      + A+     +P  ++  +   ++ 
Sbjct: 241 SKDQELESVKNNDSSLHDDYDTDSGTVYFLSKQGNVVVASNNLQRSPSKQYSSV-ITVTD 299

Query: 268 RSSHALLIKSF-IPVPCALTCGRLMNLKEKL-----VMVGGIGKQDRPDII--------K 313
            +     + S+   V C LT      L + L       +  +  +    +I         
Sbjct: 300 EAEIVYFLSSYGTIVACDLTKRCFTELPKLLPPFLEYSIDLVECEGTMYVILLSEFFESA 359

Query: 314 GIGIWVL-NGKEWQEVARMPHKF-FQGFGEFDDVFASSGTDDLIYIQSYGAP-----SLL 366
            + IW L N +EW +V  +P     + +G+  D+    G  + I +    +P        
Sbjct: 360 SLRIWRLDNNREWVQVGMLPPALSHELYGKKGDINCVGGAGNKILVCFNASPPEVYCRYF 419

Query: 367 VYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLE 402
           VYD+  ++W    KC       +   +   F+PR+E
Sbjct: 420 VYDLVAEEWNELPKC-FKDGEAVDFVSALSFQPRIE 454

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 11/212 (5%)

Query: 44  ILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDE 103
           + PD+++ +ILA LP+ S+FR   VC+ W+ + S + F   F N LS K    +   SD 
Sbjct: 8   LFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLF-NQLSVKEQLLVAEVSDS 66

Query: 104 PIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKL- 162
                 D  LR    + L  +        SS GL+C      +   YVCNP ++ ++KL 
Sbjct: 67  SSLICVDN-LRGVSELSLDFVRDRVRIRVSSNGLLCCSSIPEKGVYYVCNPSTREYRKLP 125

Query: 163 --EEPPGLKF---SDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM 217
              E P  +F    + + + L+ D   +++ V +    +  G          ++DS++  
Sbjct: 126 KSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSFICLVFDSESNK 185

Query: 218 W---VTSWKEVLTGWRAGDESIICDGVLYFLI 246
           W   V+  +E      + ++ +  +G+L++L+
Sbjct: 186 WRKFVSVLEECSFTHMSKNQVVFVNGMLHWLM 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FII1|FK118_ARATH F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana GN=At5g42360 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)

Query: 45  LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEP 104
           LPDD+LE  L  LP+ S+  A  VC++W  + +++RFL        Q PW F+F +  + 
Sbjct: 135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDG 194

Query: 105 IG----YAYDPILRKWYGIELPCIETSNWFIASSYGLVCF------MDND---SRSELYV 151
                 + YD    KW+ IE   ++    +  +S     +      MD +   S   + V
Sbjct: 195 CSSGDIHGYDVSQDKWHRIETDLLKGRFMYSVTSIHEEIYIVGGRSMDRNSFKSHRGILV 254

Query: 152 CNPISKSWKKLEEPPGLK----------FSDYSALSLSVDRVSHRYTVSIV 192
            +P  K+W+K+      +           S++S +    +R   R+ +S V
Sbjct: 255 FSPSIKAWRKIASMRHARSLPIVGATEVTSEFSTMQTKQNRQDRRFHLSRV 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FII2|FK117_ARATH F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)

Query: 45  LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEP 104
           LPDD+LE  L  LP+ S+  A  VC++W  + +++RFL        Q PW F+F +  + 
Sbjct: 135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDG 194

Query: 105 IG----YAYDPILRKWYGIELPCIETSNWFIASSYGLVCF------MDND---SRSELYV 151
                 + YD    KW+ IE   ++    +  +S     +      MD +   S   + V
Sbjct: 195 CSSGDIHGYDVSQDKWHRIETDLLKGRFMYSVTSIHEEIYIVGGRSMDRNSFKSHRGILV 254

Query: 152 CNPISKSWKKLEEPPGLK----------FSDYSALSLSVDRVSHRYTVSIV 192
            +P  K+W+K+      +           S++S +    +R   R+ +S V
Sbjct: 255 FSPSIKAWRKIASMRHARSLPIVGATEVTSEFSTMQTKQNRQDRRFHLSRV 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470 OS=Arabidopsis thaliana GN=At3g56470 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 21/203 (10%)

Query: 45  LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEP 104
           LP DLL+ +++ LP+    RA  VC+ WHE   S R       V+   PW   F+ +D+ 
Sbjct: 32  LPCDLLQLVISRLPLKDNIRASAVCKTWHEACVSLR-------VIHTSPWLIYFSKTDDS 84

Query: 105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEE 164
               YDP ++K   +  P  E S + +  S      M N +  +L   NP ++    +  
Sbjct: 85  YE-LYDPSMQKNCNLHFP--ELSGFRVCYSKDGWLLMYNPNSYQLLFFNPFTRDCVPM-- 139

Query: 165 PPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTS-WK 223
            P L  +    ++ S    S    +  V S  VT N+    ++I  Y ++   W TS +K
Sbjct: 140 -PTLWMAYDQRMAFSCAPTSTSCLLFTVTS--VTWNY----ITIKTYFANAKEWKTSVFK 192

Query: 224 EVLT-GWRAGDESIICDGVLYFL 245
             L   +   ++ +  +GV Y L
Sbjct: 193 NRLQRNFNTFEQIVFSNGVFYCL 215

Arabidopsis thaliana (taxid: 3702)

>sp|O49279|SKI15_ARATH SKP1-interacting partner 15 OS=Arabidopsis thaliana GN=SKIP15 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 159/399 (39%), Gaps = 71/399 (17%)

Query: 45  LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMF------ 98
           LP D L +I + LPI  I     VC+ ++++++S+ F+     ++S +P   +       
Sbjct: 9   LPPDSLHQIFSSLPIRDIMICRSVCKFFNQLLTSQCFI----EIISTRPPLNLLALRPPH 64

Query: 99  ------------TSSDEPIGYAYDPILRKWYGIELPCIE-TSNWFIASSYGLVCFMDN-- 143
                        ++  P  + YDP   +W+   L  +   S   +ASS GL+    +  
Sbjct: 65  HHHSHRHSGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYLWGDSI 124

Query: 144 ---DSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV-------SHRYTVSIVK 193
              +S   L  CNP+++ +K L +         + L  SV+RV       +  Y+ ++V 
Sbjct: 125 DLAESSKSLVACNPLTRQFKVLPQLGSAWSRHGTVLVDSVNRVMVLTELAALYYSGTVVA 184

Query: 194 SK--QVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGG 251
           ++  + + N      S  +  S     V +  +V + WR+  +   C      + +    
Sbjct: 185 NQWLKFSSNLPSKPRSPVLMSSS----VFALCDVGSPWRSQWKLFSCKLTNLTITHTNWV 240

Query: 252 GAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM--NLKEKLVMVGGIGKQDRP 309
              ++  G I F++  R                    RL+  N   KL+M+GG+      
Sbjct: 241 CLEKHEWGDI-FDIIKRP-------------------RLLRGNGDSKLLMIGGLKSTFSL 280

Query: 310 DIIKGIGIWV---LNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL 366
           +      + +   L   EW+E  RMP + ++GF E    F   G  D +Y  +     L 
Sbjct: 281 NPACSTILILRLDLESLEWEEAGRMPLEMYRGFQE-SSKFKVFGGGDRVYFSAKRMGKLA 339

Query: 367 VYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           ++D   + WRW    P    +   L  GF F+ +L + P
Sbjct: 340 MWDC-WQGWRWIEGVP---GYADGLCRGFVFDAKLTLMP 374

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
225454416	413	PREDICTED: F-box/kelch-repeat protein At	1.0	0.980	0.829	0.0
255541766	405	Protein UNUSUAL FLORAL ORGANS, putative	1.0	1.0	0.837	0.0
449432074	405	PREDICTED: F-box/kelch-repeat protein At	1.0	1.0	0.795	0.0
224064127	405	predicted protein [Populus trichocarpa]	1.0	1.0	0.809	0.0
224127816	424	f-box family protein [Populus trichocarp	1.0	0.955	0.795	0.0
307136358	405	F-box family protein [Cucumis melo subsp	1.0	1.0	0.777	0.0
356506030	403	PREDICTED: F-box/kelch-repeat protein At	0.995	1.0	0.755	0.0
356573181	405	PREDICTED: F-box/kelch-repeat protein At	0.995	0.995	0.742	1e-175
359473982	406	PREDICTED: F-box/kelch-repeat protein At	0.995	0.992	0.698	1e-167
358346316	404	F-box/kelch-repeat protein [Medicago tru	0.997	1.0	0.681	1e-166

>gi|225454416|ref|XP_002276444.1| PREDICTED: F-box/kelch-repeat protein At3g61590 [Vitis vinifera] gi|297745382|emb|CBI40462.3| unnamed protein product [Vitis vinifera]

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/405 (82%), Positives = 371/405 (91%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M+GE SWINHC+DD  R I +F SF E+ +E NKE +T+SVDLILP+DLLERILAYLPIA
Sbjct: 1   MEGEASWINHCLDDRRRDIGDFGSFSEIREEVNKEVATVSVDLILPNDLLERILAYLPIA 60

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIE 120
           SI RAG VC+RWHEIVSS+RFLWN S++LSQKPWYFMFTSSDEP+GYAYDPI RKWY IE
Sbjct: 61  SILRAGSVCKRWHEIVSSKRFLWNKSHILSQKPWYFMFTSSDEPVGYAYDPIFRKWYSIE 120

Query: 121 LPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180
           LPCI TSNWFI SS GLVCFMD+DSRSELY+CNP++K  K+LEEPPGLKFSDYSAL++SV
Sbjct: 121 LPCINTSNWFITSSSGLVCFMDSDSRSELYICNPVTKRCKRLEEPPGLKFSDYSALAISV 180

Query: 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG 240
           +R+SH YT+SIVKSKQV GNFFQW+LSIHIYDS+TM+WVT+  EV+TGWRAGDES+ICDG
Sbjct: 181 NRISHHYTISIVKSKQVPGNFFQWDLSIHIYDSETMIWVTALTEVVTGWRAGDESVICDG 240

Query: 241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMV 300
           VLYFLIY+TGGGAPENRHGLI +NL SRSSH LLI+SFIPVPC LTCGRLMNLK KLVMV
Sbjct: 241 VLYFLIYSTGGGAPENRHGLIMYNLLSRSSHGLLIRSFIPVPCPLTCGRLMNLKGKLVMV 300

Query: 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360
           GGIGK DRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY
Sbjct: 301 GGIGKHDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360

Query: 361 GAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           GAP LL +D+NLKQW+WS KCPV KRFPLQLFTGFCFEPRLEIAP
Sbjct: 361 GAPHLLGFDINLKQWKWSQKCPVVKRFPLQLFTGFCFEPRLEIAP 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541766|ref|XP_002511947.1| Protein UNUSUAL FLORAL ORGANS, putative [Ricinus communis] gi|223549127|gb|EEF50616.1| Protein UNUSUAL FLORAL ORGANS, putative [Ricinus communis]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/405 (83%), Positives = 368/405 (90%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M+GETSWI+ C DD+AR I EFDSF ELSDEGNKE +T+SVDLILPDDLLERILAYLPIA
Sbjct: 1   MEGETSWISDCFDDVARDIGEFDSFSELSDEGNKEVNTISVDLILPDDLLERILAYLPIA 60

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIE 120
           SIFRAG VC+RW EIVSSRRFLWNFS VL QKPWYFMFTSSDEP+GYAYDPILRKWYGI 
Sbjct: 61  SIFRAGSVCKRWREIVSSRRFLWNFSRVLPQKPWYFMFTSSDEPVGYAYDPILRKWYGIN 120

Query: 121 LPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180
           LPCIETSN FIASS GLVCFMD DSRS LYV NPI+K  KKLEEPPGLK +DYSAL++SV
Sbjct: 121 LPCIETSNLFIASSCGLVCFMDKDSRSALYVSNPITKFCKKLEEPPGLKIADYSALAISV 180

Query: 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG 240
           +R SH YT+S+VKSKQV GNFFQW+L I+ YDS+T MW+TSW EVLTGWR+GDES+ICDG
Sbjct: 181 NRTSHGYTISVVKSKQVPGNFFQWDLCIYTYDSETRMWLTSWTEVLTGWRSGDESVICDG 240

Query: 241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMV 300
           VLY LIY+TGGG PENRHGLI++NLSSRSSH LLI+SFI VPC LTCGRLMNLKEKLVMV
Sbjct: 241 VLYVLIYSTGGGTPENRHGLITYNLSSRSSHGLLIRSFIRVPCPLTCGRLMNLKEKLVMV 300

Query: 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360
           GGIGK DRPDIIKGIGIWVLNGKEWQE+ARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY
Sbjct: 301 GGIGKHDRPDIIKGIGIWVLNGKEWQEIARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360

Query: 361 GAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           GAP+LLV++   KQW+WS KCPVTKRFPLQLFTGFCFEPRLEI P
Sbjct: 361 GAPALLVFNTKQKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIEP 405

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432074|ref|XP_004133825.1| PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cucumis sativus] gi|449480293|ref|XP_004155853.1| PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cucumis sativus]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/405 (79%), Positives = 370/405 (91%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M+G+TSWI HC  DM+R + +FDS+L+ ++EG KEA  +SV+ ILPDDLLERIL+YLPIA
Sbjct: 1   MEGQTSWIRHCHTDMSRDLEDFDSYLDFTNEGGKEAVAVSVESILPDDLLERILSYLPIA 60

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIE 120
           SIFRAG VC+RWH+IVSSRRFLWN S++LSQKPWYFMFTSSD+PIGYAYDP+LRKWY I+
Sbjct: 61  SIFRAGSVCKRWHDIVSSRRFLWNVSHILSQKPWYFMFTSSDDPIGYAYDPVLRKWYAID 120

Query: 121 LPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180
           LPCI+ SN FIASS GLVCFMDNDSRSEL+VCNPI+K   KL EP G KFSDYSAL++SV
Sbjct: 121 LPCIDKSNCFIASSCGLVCFMDNDSRSELHVCNPITKCSMKLPEPLGSKFSDYSALAISV 180

Query: 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG 240
           +RVSH YT+S+VKSKQV GNFFQW++SIHIYDS+TMMWVTS  EVLTGWR GDES+ICDG
Sbjct: 181 NRVSHNYTISVVKSKQVPGNFFQWDISIHIYDSETMMWVTSLTEVLTGWRGGDESVICDG 240

Query: 241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMV 300
           VLYFLIY+TGGGAP+NRHGL+++N+S+ SSH LLI+SFIP PC+LTCGRLMNLK+KLVMV
Sbjct: 241 VLYFLIYSTGGGAPDNRHGLVTYNISNHSSHGLLIRSFIPAPCSLTCGRLMNLKQKLVMV 300

Query: 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360
           GGIGKQDRPDIIKGIGIW+L GKEW+E+ARMPHKFFQGFGEFDDVFAS GTDDL+YIQSY
Sbjct: 301 GGIGKQDRPDIIKGIGIWILCGKEWREIARMPHKFFQGFGEFDDVFASCGTDDLVYIQSY 360

Query: 361 GAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           GAP+LL +DMNL+QWRWS KCPVTKRFPLQLFTGFCFEPRLEI P
Sbjct: 361 GAPALLTFDMNLRQWRWSQKCPVTKRFPLQLFTGFCFEPRLEINP 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064127|ref|XP_002301389.1| predicted protein [Populus trichocarpa] gi|222843115|gb|EEE80662.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/405 (80%), Positives = 368/405 (90%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M+GETSW+ +C +D  RGI EFDSF ELSDEG+KE + +SVDLILPDDLLERILA LP+A
Sbjct: 1   MEGETSWVINCFEDSTRGIGEFDSFSELSDEGSKEVNAVSVDLILPDDLLERILACLPVA 60

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIE 120
           SIFRAGCVC+RWHEIVSSRRFLWNFS+VL QKPWYFMFTSSDEP+GYA+DP+LRKWYGI+
Sbjct: 61  SIFRAGCVCKRWHEIVSSRRFLWNFSHVLPQKPWYFMFTSSDEPVGYAFDPVLRKWYGID 120

Query: 121 LPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180
           LP I+TSNWFIASS GLV FMDND+RSELYVCNPI+K  +KL+E PGLKF DYSAL++SV
Sbjct: 121 LPRIKTSNWFIASSCGLVSFMDNDTRSELYVCNPITKHCRKLQESPGLKFPDYSALAISV 180

Query: 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG 240
           +R+SH YT+SIVKSKQV GNFFQW+LSIHIYDSDT MWVTS  EVLTGWR GDES+IC G
Sbjct: 181 NRISHGYTISIVKSKQVPGNFFQWDLSIHIYDSDTRMWVTSCTEVLTGWRGGDESVICGG 240

Query: 241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMV 300
            LY LIY+ GGG+PE RHGLI++NLSSRSS+ LLI+SFI VPC LTCGRLMNL EKLVMV
Sbjct: 241 FLYVLIYSAGGGSPETRHGLITYNLSSRSSNGLLIRSFIKVPCPLTCGRLMNLNEKLVMV 300

Query: 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360
           GGIGKQDRPDIIKGIGIWVLNGK+WQE+ARMPHK FQGFGE DDVFASSGTD+LIYIQSY
Sbjct: 301 GGIGKQDRPDIIKGIGIWVLNGKDWQEIARMPHKCFQGFGELDDVFASSGTDNLIYIQSY 360

Query: 361 GAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           GAP+LLV+D N KQW+WS KCPVTKRFPLQLFTGFCFEPR+E+AP
Sbjct: 361 GAPALLVFDFNQKQWKWSQKCPVTKRFPLQLFTGFCFEPRIEMAP 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127816|ref|XP_002320171.1| f-box family protein [Populus trichocarpa] gi|222860944|gb|EEE98486.1| f-box family protein [Populus trichocarpa]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/405 (79%), Positives = 362/405 (89%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M+GETSW+N+C ++  R I EFDSF E SDEGNKE + +SVDLILPDDLLERILA LPIA
Sbjct: 20  MEGETSWVNNCFENPTRDIGEFDSFSEHSDEGNKEVNAISVDLILPDDLLERILACLPIA 79

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIE 120
           SIFRAGCVC+RWHEIVSSRRFLWNFS VL QKPWYFMFTSSDEP+GYA+DPILRKW+GI+
Sbjct: 80  SIFRAGCVCKRWHEIVSSRRFLWNFSPVLPQKPWYFMFTSSDEPVGYAFDPILRKWFGID 139

Query: 121 LPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180
           LP I+ SNWFIASS GLV FMDNDSRSELYVCNPI+K   KL+EPPGLK  DYSAL++ V
Sbjct: 140 LPYIQKSNWFIASSCGLVSFMDNDSRSELYVCNPITKRCMKLQEPPGLKVYDYSALAIYV 199

Query: 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG 240
           +R+SH YT+SIVKSK   GNFFQ +LSIHIYDS+T MWVTS  EV+TGWR GDES+IC G
Sbjct: 200 NRISHGYTISIVKSKLCPGNFFQSDLSIHIYDSETRMWVTSCTEVMTGWRGGDESVICGG 259

Query: 241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMV 300
           VLYFLIY+ GGGA E RHGLI +NLS+RSSH LLI+SFI VPC LTCGRLMNL EKLVMV
Sbjct: 260 VLYFLIYSAGGGATETRHGLIRYNLSNRSSHGLLIRSFIKVPCPLTCGRLMNLNEKLVMV 319

Query: 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360
           GGIGKQDRPDIIKGIGIWVLNGK+WQE+ARMPHKFFQGFGEFD+VFASSGT++ IYIQSY
Sbjct: 320 GGIGKQDRPDIIKGIGIWVLNGKDWQEIARMPHKFFQGFGEFDEVFASSGTNNHIYIQSY 379

Query: 361 GAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           GAP+LLV+D+N KQW+WS KCPV+KRFPLQLFTGFCFEPRL++AP
Sbjct: 380 GAPALLVFDINQKQWKWSQKCPVSKRFPLQLFTGFCFEPRLDMAP 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136358|gb|ADN34172.1| F-box family protein [Cucumis melo subsp. melo]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/405 (77%), Positives = 363/405 (89%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M+ +TSWI HC  DM+R + +FDS+L+ ++EG +EA  +SV+ ILPDDLLERIL+YLPIA
Sbjct: 1   MERQTSWIRHCHTDMSRDLEDFDSYLDFTNEGGEEAVAVSVESILPDDLLERILSYLPIA 60

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIE 120
           SIFRAG VC+RWH+IVSSRRFLWN S++LSQKPWYFMFTSSDEPIGYAYDP+LRKWY I+
Sbjct: 61  SIFRAGSVCKRWHDIVSSRRFLWNVSHILSQKPWYFMFTSSDEPIGYAYDPVLRKWYAID 120

Query: 121 LPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180
           LPCI+ SN  IASS GLVCFMD DSRSEL+VCNPI+K   +L EP G K SDYSAL++SV
Sbjct: 121 LPCIDKSNCDIASSCGLVCFMDKDSRSELHVCNPITKCSMRLPEPLGSKSSDYSALAISV 180

Query: 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG 240
           +RVSH YT+S+VKSKQV GNFFQW++SIHIYDS+ MMWVTS  EVLTGWR GDES+ICDG
Sbjct: 181 NRVSHNYTISVVKSKQVPGNFFQWDISIHIYDSEKMMWVTSLTEVLTGWRGGDESVICDG 240

Query: 241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMV 300
           VLYFLIY+TGGGAP+NRHGL+++N+S+ SSH LLI+SFIP PC+LTCGRLMNLK+KLVMV
Sbjct: 241 VLYFLIYSTGGGAPDNRHGLVTYNISNHSSHGLLIRSFIPAPCSLTCGRLMNLKQKLVMV 300

Query: 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360
           GGIGK DRPDIIKGIGIW+L GKEW+E+ARMPHKFFQGFGEFDDVF S GTDDLIYIQSY
Sbjct: 301 GGIGKPDRPDIIKGIGIWILCGKEWREIARMPHKFFQGFGEFDDVFGSCGTDDLIYIQSY 360

Query: 361 GAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           GAP+LL +DMNL+QWRWS KCPVTKRFPLQLFTGFCFEPRLEI P
Sbjct: 361 GAPALLTFDMNLRQWRWSQKCPVTKRFPLQLFTGFCFEPRLEINP 405

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506030|ref|XP_003521791.1| PREDICTED: F-box/kelch-repeat protein At3g61590-like [Glycine max]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/405 (75%), Positives = 360/405 (88%), Gaps = 2/405 (0%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M GETSWI+H  DD  R    FDSFLELS+EG KEA+ +S+D +LPDDLLERILAYLPIA
Sbjct: 1   MAGETSWISH-YDDRQRETGAFDSFLELSEEGEKEATAVSLD-VLPDDLLERILAYLPIA 58

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIE 120
           SIFRAGCV +RWHEIV+S RF+WN S+VL QKPWYFMFTSSDEP G+A+DP+LRKWY IE
Sbjct: 59  SIFRAGCVSKRWHEIVNSERFVWNLSHVLPQKPWYFMFTSSDEPGGHAFDPLLRKWYSIE 118

Query: 121 LPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180
           LPCI TSNWFIASSYG+VCFMDNDSRSEL +CNPI+K+++KLEEPPGLKFSDYSAL++SV
Sbjct: 119 LPCIGTSNWFIASSYGMVCFMDNDSRSELCICNPITKTYRKLEEPPGLKFSDYSALAISV 178

Query: 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG 240
           +R SHRYTV+IVKSKQV  N+ QW++SIH+Y+S+  +WVTS  EVL GWR G+ES+IC+ 
Sbjct: 179 NRESHRYTVAIVKSKQVPDNYVQWDISIHLYNSENAIWVTSLTEVLMGWRGGNESVICNE 238

Query: 241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMV 300
           +LYFL+Y+TGGG  ENRH L+++N+S+ SS   L ++FIPVPC+LTCGRLMNLKEKLVMV
Sbjct: 239 MLYFLVYSTGGGQSENRHALVAYNMSNHSSQGSLTRNFIPVPCSLTCGRLMNLKEKLVMV 298

Query: 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360
           GGIGK DRPDIIKGIGIW+LN K+W+E+ARMPHKFFQGFGE DDVFASSG DDLIYIQSY
Sbjct: 299 GGIGKPDRPDIIKGIGIWLLNDKKWEEIARMPHKFFQGFGELDDVFASSGADDLIYIQSY 358

Query: 361 GAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           GAP+LL++D+N KQW+WS KCPV+KRFPLQLFTGFCFEPRLEIAP
Sbjct: 359 GAPALLIFDVNHKQWKWSQKCPVSKRFPLQLFTGFCFEPRLEIAP 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573181|ref|XP_003554742.1| PREDICTED: F-box/kelch-repeat protein At3g61590-like [Glycine max]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 302/407 (74%), Positives = 352/407 (86%), Gaps = 4/407 (0%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M GETSWI+H  DD  R    FDSFLEL +EG KEA+ +S+D +LPDDLLERILAYLPIA
Sbjct: 1   MAGETSWISH-YDDRQRETGAFDSFLELGEEGEKEATAVSLD-VLPDDLLERILAYLPIA 58

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYG-- 118
           SIFRAGCV +RWHEIV+S RF+WN S+VL QKPWYFMFTSSDEP GYA+DP+LRKWY   
Sbjct: 59  SIFRAGCVSKRWHEIVNSERFVWNLSHVLPQKPWYFMFTSSDEPDGYAFDPVLRKWYRYR 118

Query: 119 IELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSL 178
           IELPCI TSNWFIASSYG+VCFMDNDSRSE+ +CNPI+K+++KLEEPPGLK SDYSAL++
Sbjct: 119 IELPCIGTSNWFIASSYGMVCFMDNDSRSEICICNPITKTYRKLEEPPGLKVSDYSALAI 178

Query: 179 SVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC 238
           SV+R SH YTV+IVKSKQV  NF QW++SIH+Y+S+   WVTS  EVL GWR G+ES+IC
Sbjct: 179 SVNRESHCYTVAIVKSKQVPENFVQWDISIHLYNSENATWVTSLTEVLMGWRGGNESVIC 238

Query: 239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLV 298
           +G+L FL+Y+TGGG P NRH LI++N+S+ SS   L ++FIPVP +LTCGRLMNLKEKLV
Sbjct: 239 NGMLCFLVYSTGGGQPVNRHALIAYNMSNHSSQGSLTRNFIPVPFSLTCGRLMNLKEKLV 298

Query: 299 MVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQ 358
           MVGGIGK DRPDIIKGIGIW+L  K+W+E+ARMPHKFFQGFGEFDDVFASSG DDLIYIQ
Sbjct: 299 MVGGIGKPDRPDIIKGIGIWLLKDKKWEEIARMPHKFFQGFGEFDDVFASSGADDLIYIQ 358

Query: 359 SYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           SYG P+LL++D+N KQW+WS KCPV KRFPLQLFTGFCFE RLEIAP
Sbjct: 359 SYGGPALLIFDVNHKQWKWSQKCPVGKRFPLQLFTGFCFEARLEIAP 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473982|ref|XP_003631384.1| PREDICTED: F-box/kelch-repeat protein At3g61590-like [Vitis vinifera] gi|297742278|emb|CBI34427.3| unnamed protein product [Vitis vinifera]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 285/408 (69%), Positives = 333/408 (81%), Gaps = 5/408 (1%)

Query: 1   MDGETSWINHCIDD---MARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYL 57
           M+GETSWI++  DD       +  FD + ELSD+   + + +S+D ILPDDLLERILA L
Sbjct: 1   MEGETSWIDYQFDDNRTQVLDLRVFDLYPELSDDDKSDNNLVSIDSILPDDLLERILALL 60

Query: 58  PIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWY 117
           PIASIF+A  V R+W EIV SRRFL N S VL  KPWYFMFT SDEP GYAYDP+ RKWY
Sbjct: 61  PIASIFKAAAVSRKWCEIVHSRRFLCNASRVLVPKPWYFMFTGSDEPTGYAYDPMDRKWY 120

Query: 118 GIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALS 177
             +LP IETS+WFIASSYGLVCFMDNDSRSELYVCN I+K  +KL EPPG KFSDYSAL+
Sbjct: 121 SFQLPLIETSSWFIASSYGLVCFMDNDSRSELYVCNLITKDHRKLVEPPGQKFSDYSALA 180

Query: 178 LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESII 237
           +SVD +SH YTV++VKSKQ+  NF QW LSIH Y S+T MWV+   E++TGWR GD+S+I
Sbjct: 181 ISVDSLSHSYTVAVVKSKQIPNNFVQWNLSIHCYSSETGMWVSPVMELMTGWRGGDDSVI 240

Query: 238 CDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKL 297
           CDGVLYFL+++T      N+H L +FNLSSR S+ L I SFIPVPC+LTCGRLMN+  KL
Sbjct: 241 CDGVLYFLVHSTTLTG--NQHALATFNLSSRPSNGLSIDSFIPVPCSLTCGRLMNMNGKL 298

Query: 298 VMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYI 357
           VMVGGIGK DRP IIKGIGIW L G++W+EV+RMPH+FFQGFGEFDDVFASSG + L+YI
Sbjct: 299 VMVGGIGKHDRPGIIKGIGIWALKGRDWEEVSRMPHRFFQGFGEFDDVFASSGFNSLVYI 358

Query: 358 QSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           QSYGAP+LLV+DMNL+QW+WS KCPVTKRFPLQLFTGFCFEPRLEIAP
Sbjct: 359 QSYGAPALLVFDMNLRQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346316|ref|XP_003637215.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355503150|gb|AES84353.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/405 (68%), Positives = 332/405 (81%), Gaps = 1/405 (0%)

Query: 1   MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
           M G+T+WI+H   +  +   + DS  E  DE +KE   +S+D ++PD+LLER LAYLP+ 
Sbjct: 1   MAGDTAWISHYDVETRKETKDIDSLAEPGDEVDKEGPVISLD-VMPDELLERTLAYLPVP 59

Query: 61  SIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIE 120
           S+FRA  VC+RW+EIV+S RFLWN SN   QKPWYFMFTSSDEP G AYDP LRKWY IE
Sbjct: 60  SVFRASSVCKRWYEIVTSERFLWNPSNSPPQKPWYFMFTSSDEPTGCAYDPNLRKWYCIE 119

Query: 121 LPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV 180
           LP I TSNW ++SS GLVCFMDNDSRSEL VCNP++K+ +KL+EPPG +FSDY AL++SV
Sbjct: 120 LPFIGTSNWLVSSSNGLVCFMDNDSRSELCVCNPMTKTCRKLQEPPGSRFSDYGALAMSV 179

Query: 181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG 240
            R SH YTV+IVKSKQV  NF QW++SIHIY S+   W T   EVL GWR GDES+IC+G
Sbjct: 180 YRESHGYTVAIVKSKQVPENFVQWDISIHIYKSEEETWATPLTEVLVGWRGGDESVICNG 239

Query: 241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMV 300
           VLYFL+Y+TG   PENRH ++++N+S RSS   L +SFIPVPC+LTCGRLMN+KEKLVMV
Sbjct: 240 VLYFLVYSTGVVPPENRHAVVAYNISGRSSQTSLRRSFIPVPCSLTCGRLMNMKEKLVMV 299

Query: 301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY 360
           GGIGK DR DIIKGIGIWVL+ K+W+EV RMPHK+FQGFGEFD+VFASSG DDLIYIQSY
Sbjct: 300 GGIGKSDRTDIIKGIGIWVLHDKKWEEVVRMPHKYFQGFGEFDEVFASSGIDDLIYIQSY 359

Query: 361 GAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
           G+P+LL +DMN+K W+WS KCPV+KRFPLQLF+GFCFEPRL+IAP
Sbjct: 360 GSPALLTFDMNIKHWKWSQKCPVSKRFPLQLFSGFCFEPRLKIAP 404

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2082797	411	HWS "HAWAIIAN SKIRT" [Arabidop	0.990	0.975	0.672	1e-155
TAIR|locus:2015974	467	LCR "AT1G27340" [Arabidopsis t	0.804	0.698	0.262	1.4e-18
TAIR|locus:2143256	448	AT5G15710 "AT5G15710" [Arabido	0.469	0.424	0.312	5.9e-16
TAIR|locus:2015766	442	UFO "AT1G30950" [Arabidopsis t	0.787	0.721	0.243	7.3e-16
TAIR|locus:2125889	457	AT4G33160 "AT4G33160" [Arabido	0.491	0.435	0.259	6.8e-14
TAIR|locus:2169253	403	AT5G43190 "AT5G43190" [Arabido	0.817	0.821	0.242	7.2e-13
TAIR|locus:2157834	359	AT5G49610 "AT5G49610" [Arabido	0.496	0.559	0.25	2.3e-09
TAIR|locus:2162286	563	AT5G42350 "AT5G42350" [Arabido	0.291	0.209	0.290	7e-08
TAIR|locus:2162301	563	AT5G42360 "AT5G42360" [Arabido	0.291	0.209	0.290	7e-08
TAIR|locus:2092160	414	AT3G26010 "AT3G26010" [Arabido	0.474	0.463	0.283	3.8e-07

TAIR|locus:2082797 HWS "HAWAIIAN SKIRT" [Arabidopsis thaliana (taxid:3702)]

 Score = 1518 (539.4 bits), Expect = 1.0e-155, P = 1.0e-155
 Identities = 279/415 (67%), Positives = 343/415 (82%)

Query:     1 MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIA 60
             M+ ETSW N+    +   + E +S+ E SD+  K   T S+D +LPDDLLERIL++LPIA
Sbjct:     1 MEAETSWTNYPYSYITY-VPEAESYREQSDDEAK-VETFSMDSLLPDDLLERILSFLPIA 58

Query:    61 SIFRAGCVCRRWHEIVSSRRFLWNFSN-VLSQKPWYFMFTSSDEPIGYAYDPILRKWYGI 119
             SIFRAG VC+RW+EIVSSRRFL NFSN  +SQ+PWYFMFT++D+P GYAYDPI+RKWY  
Sbjct:    59 SIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTTDDPSGYAYDPIIRKWYSF 118

Query:   120 ELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS 179
             +LPCIETSNWF+ASS GLVCFMDND R+++YV NPI+K W+ L EPPG K +DY+A+S S
Sbjct:   119 DLPCIETSNWFVASSCGLVCFMDNDCRNKIYVSNPITKQWRTLIEPPGHKSTDYTAMSTS 178

Query:   180 VDRVSHR-------YTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAG 232
             V+R +         Y+VSIVKSKQV GNFFQW+LSIH+Y S+TM W T   +VL+GWR G
Sbjct:   179 VNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLSIHLYSSETMTWTTLVNDVLSGWRGG 238

Query:   233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSS--RSSHALLIKSFIPVPCALTCGRL 290
             +ES+IC+ VLYF+IY+TGG   ++RHGLI+ NLSS    S  +L++SFIP+PC+LTCGRL
Sbjct:   239 NESVICNNVLYFMIYSTGGS--DHRHGLIASNLSSIGSPSSGILMRSFIPMPCSLTCGRL 296

Query:   291 MNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSG 350
             MNL+E+LV+VGGIGK DRP++IKGIGIWVL GKEW E+A+MP +FFQGFGEFD+VFASSG
Sbjct:   297 MNLRERLVIVGGIGKHDRPEVIKGIGIWVLKGKEWVEMAKMPQRFFQGFGEFDEVFASSG 356

Query:   351 TDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPRLEIAP 405
             TDDL+YIQSYG+P+LL +DMNLK WRWS KCPVTK+FPLQLFTGFCFEPRLEIAP
Sbjct:   357 TDDLVYIQSYGSPALLTFDMNLKYWRWSQKCPVTKKFPLQLFTGFCFEPRLEIAP 411

GO:0005634 "nucleus" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0048513 "organ development" evidence=IMP

GO:0006869 "lipid transport" evidence=RCA

TAIR|locus:2015974 LCR "AT1G27340" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 97/369 (26%), Positives = 171/369 (46%)

Query:    46 PDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPI 105
             P DL E +++ LP+A+ F+   VCR+W+ ++ S  F   F+ +    PW++  T  +   
Sbjct:   121 PQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNS 180

Query:   106 GYAYDPILRKWYGIELPCIETSNWFI--ASSYGLVCFMDNDSRSELYVCNPISKSWKKLE 163
             G  YDP L+KW+   +P +   +  +  AS+ GLVCF+D   R+  YV NP++KS+++L 
Sbjct:   181 GQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHRN-FYVSNPLTKSFREL- 238

Query:   164 EPPGLKFSDYS----ALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWV 219
               P   F  +S     ++L+ +  SH Y V  V  +   G +        +YDS + +W 
Sbjct:   239 --PARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCE---GEY-------EVYDSLSNVWT 286

Query:   220 ------TSWK-EVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHA 272
                   ++ K  VL  +++  + +     LYF++  T    PE   G++S+++ S     
Sbjct:   287 KRGTIPSNIKLPVLLNFKS--QPVAIHSTLYFML--TD---PE---GILSYDMVSGKWKQ 336

Query:   273 LLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDI-IKGIGIWVLNGKEWQEVARM 331
              +I    P P  L+   L    E+L++VG + K     + I  +    L  KE   +  +
Sbjct:   337 FII----PGPPDLSDHTLAACGERLMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNI 392

Query:   332 PHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTK-RFPLQ 390
                 F G     +   + G   L+ ++S     L+ Y+   ++W     C V + R  L 
Sbjct:   393 WCLEFYGKHIRMNCLGNKGCLILLSLRSRQMNRLITYNAVTREWTKVPGCTVPRGRKRLW 452

Query:   391 LFTGFCFEP 399
             +  G  F P
Sbjct:   453 IACGTAFHP 461

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010928 "regulation of auxin mediated signaling pathway" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 5.9e-16, P = 5.9e-16
 Identities = 64/205 (31%), Positives = 94/205 (45%)

Query:    44 ILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMF--TSS 101
             +LP+DLL  ILA +P   IFR   VC++W+ I+    FL   SNV S  P    F   S 
Sbjct:   106 MLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSP 165

Query:   102 DEPIGYAYDPILRKWYGIELPCIET-SNWFIASSYGLVCFMDNDSRS-ELYVCNPISKSW 159
               P    +   L+ WY I    +   + W + SS GLVCF   D  +    VCNP+ +SW
Sbjct:   166 QIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTLVCNPLMQSW 225

Query:   160 KKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWV 219
             + L   P + ++    L + VDR    + V  + +  + G+     L   +YDS T  W 
Sbjct:   226 RTL---PSMHYNQQRQLIMVVDRSDKSFKV--IATSDIYGDK---SLPTEVYDSKTDKW- 276

Query:   220 TSWKEVLTGWR-AGDESIICDGVLY 243
              S  +++        +   CD  LY
Sbjct:   277 -SLHQIMPAVNLCSSKMAYCDSRLY 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015766 UFO "AT1G30950" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 7.3e-16, P = 7.3e-16
 Identities = 89/366 (24%), Positives = 159/366 (43%)

Query:    45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMF------ 98
             LP  LL+R++A+LP  + FR  CVC+R++ ++ S  FL  +  +L  +   F+F      
Sbjct:    50 LPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCFLFFKHKTL 109

Query:    99 ---------TSSDEPI---GYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSR 146
                      T+ D+     G+ +DP   +WY +    I +  +   SS GLV ++  ++ 
Sbjct:   110 KSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAYIPSGFYPSGSSGGLVSWVSEEAG 169

Query:   147 SE-LYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWE 205
              + + +CNP+  S  +L  PP  +   + ++ LSV   S   TV+      +   +    
Sbjct:   170 LKTILLCNPLVGSVSQL--PPISRPRLFPSIGLSVTPTSIDVTVA---GDDLISPYAVKN 224

Query:   206 LSIHIYDSDT----MMW-VTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGL 260
             LS   +  D      +W +TS    L    +G + +   G  Y + Y+     P     +
Sbjct:   225 LSSESFHVDAGGFFSLWAMTSSLPRLCSLESG-KMVYVQGKFYCMNYS-----P---FSV 275

Query:   261 ISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVL 320
             +S+ ++        IK   P+   L    L+  K +L++V  + K  + ++ K + +W L
Sbjct:   276 LSYEVTGNR----WIKIQAPMRRFLRSPSLLESKGRLILVAAVEKS-KLNVPKSLRLWSL 330

Query:   321 --NGKEWQEVARMPHKFFQGFG--EFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR 376
               +   W E+ RMP   +  F   E    F   G  + + I   G    L++D+  K W 
Sbjct:   331 QQDNATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWL 390

Query:   377 WSHKCP 382
             W   CP
Sbjct:   391 WVPPCP 396

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0000151 "ubiquitin ligase complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=RCA

TAIR|locus:2125889 AT4G33160 "AT4G33160" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
 Identities = 57/220 (25%), Positives = 101/220 (45%)

Query:    36 ASTLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWY 95
             AS   +D  L DD+LER+L++LP +  FR   VC+RW    +S+ F    S + ++ PW+
Sbjct:    62 ASEFPMD-DLNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWF 120

Query:    96 FMFTSSDEPIGYAYDPILRKWYGIELPCI---ETSNWF-IASSYGLVCFMDNDSRSELYV 151
             FM  +      + +D     W  +           ++  +ASS GL+C+  + S  +  +
Sbjct:   121 FMIDNDSNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSIS-GDFLL 179

Query:   152 CNPISKSWKKLEEPPGLKFSDYSALSLSVDRVS-HRYTVSIVKSKQVTGNFFQWELSIHI 210
              NP++ S + +            A++++   V+   YT+  + S ++        LS  I
Sbjct:   180 RNPLTGSSRDIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTI-SGEIPN------LSFKI 232

Query:   211 YDSDTMMWVTSWKEVLTGWRAGDESIICD-----GVLYFL 245
             Y+S+   W  S  + L   +  D S+  D     G +YFL
Sbjct:   233 YESNADSW--SKDQELESVKNNDSSLHDDYDTDSGTVYFL 270

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2169253 AT5G43190 "AT5G43190" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 7.2e-13, P = 7.2e-13
 Identities = 91/375 (24%), Positives = 157/375 (41%)

Query:    45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEP 104
             LP+ LLE IL+ LP  ++     + R    ++ S  F+ + S  L   P + + +     
Sbjct:    51 LPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISDHSFSL---PSFLLLSHPQSF 107

Query:   105 IGYA-YDPILRKWYGIELP---CIETSNWFIASSYGLVCF-MDNDSRSELYVCNPISKSW 159
               +  ++P L  W  + LP    +  ++  ++SS GL+CF +   S S L + NP+++S 
Sbjct:   108 NSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLSIFNPLTRSS 167

Query:   160 KKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMW- 218
             + ++ P    F  +  LSL      ++       S   +        S+ +YDS    W 
Sbjct:   168 RSIKLPC-YPFP-FELLSLVTSPKGYKIFTLCSSSSAASSR------SVCLYDSGDRSWR 219

Query:   219 -VTSWKEVLT-GWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIK 276
                   +VL  G+    + +  +G LYF        A      ++S +L+          
Sbjct:   220 KFGGVDQVLPRGFN--QDGVFYNGSLYF--------ARSEPFLIVSVDLNDGKWTTATGD 269

Query:   277 SFIPVPCALTCGRLMNLKEK--LVMVGGIGKQDRPDIIKGIGIWVLNGK--EWQEVARMP 332
                P    +T  RL++  EK  L MVGGIG      I + I IW    +   W EV  +P
Sbjct:   270 GVFPADDEITFARLVSDPEKKILYMVGGIGSNG---ICRSIKIWEFKEETESWIEVETLP 326

Query:   333 ----HKFFQG-FGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCP-VTKR 386
                  KF    +  ++ V+      ++I +  Y  P +L + +  + W W  KCP + ++
Sbjct:   327 DIVCRKFTSVCYHNYEHVYCL-WHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEK 385

Query:   387 FPLQLFTGFCFEPRL 401
             +    F  F F P L
Sbjct:   386 WSCG-FRWFSFVPSL 399

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006865 "amino acid transport" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 53/212 (25%), Positives = 98/212 (46%)

Query:    44 ILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDE 103
             + PD+++ +ILA LP+ S+FR   VC+ W+ + S + F   F N LS K    +   SD 
Sbjct:     8 LFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLF-NQLSVKEQLLVAEVSDS 66

Query:   104 PIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKL- 162
                   D  LR    + L  +        SS GL+C      +   YVCNP ++ ++KL 
Sbjct:    67 SSLICVDN-LRGVSELSLDFVRDRVRIRVSSNGLLCCSSIPEKGVYYVCNPSTREYRKLP 125

Query:   163 --EEPPGLKF---SDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM 217
                E P  +F    + + + L+ D   +++ V +    +  G          ++DS++  
Sbjct:   126 KSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSFICLVFDSESNK 185

Query:   218 W---VTSWKEVLTGWRAGDESIICDGVLYFLI 246
             W   V+  +E      + ++ +  +G+L++L+
Sbjct:   186 WRKFVSVLEECSFTHMSKNQVVFVNGMLHWLM 217

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162286 AT5G42350 "AT5G42350" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
 Identities = 38/131 (29%), Positives = 64/131 (48%)

Query:    45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEP 104
             LPDD+LE  L  LP+ S+  A  VC++W  + +++RFL        Q PW F+F +  + 
Sbjct:   135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDG 194

Query:   105 IG----YAYDPILRKWYGIELPCIETSNWFIASSYGLVCF------MDNDS-RSE--LYV 151
                   + YD    KW+ IE   ++    +  +S     +      MD +S +S   + V
Sbjct:   195 CSSGDIHGYDVSQDKWHRIETDLLKGRFMYSVTSIHEEIYIVGGRSMDRNSFKSHRGILV 254

Query:   152 CNPISKSWKKL 162
              +P  K+W+K+
Sbjct:   255 FSPSIKAWRKI 265

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162301 AT5G42360 "AT5G42360" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
 Identities = 38/131 (29%), Positives = 64/131 (48%)

Query:    45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEP 104
             LPDD+LE  L  LP+ S+  A  VC++W  + +++RFL        Q PW F+F +  + 
Sbjct:   135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDG 194

Query:   105 IG----YAYDPILRKWYGIELPCIETSNWFIASSYGLVCF------MDNDS-RSE--LYV 151
                   + YD    KW+ IE   ++    +  +S     +      MD +S +S   + V
Sbjct:   195 CSSGDIHGYDVSQDKWHRIETDLLKGRFMYSVTSIHEEIYIVGGRSMDRNSFKSHRGILV 254

Query:   152 CNPISKSWKKL 162
              +P  K+W+K+
Sbjct:   255 FSPSIKAWRKI 265

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092160 AT3G26010 "AT3G26010" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 59/208 (28%), Positives = 91/208 (43%)

Query:    45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNV--LSQKPWYFMFTSSD 102
             L D +   ILA LP+  I R   V + W   + S  F   F +V   S   W  M+    
Sbjct:    10 LTDAIWTEILARLPLRIIARFKSVSKTWKSTIESVYFRRLFVSVHRKSSTSWSLMWYGQK 69

Query:   103 EPIGYAYDPI--LRKWYGIELPCIETSNWFI-ASSYGLVCFMDNDSRSELYVCNPISKSW 159
             + +G+       L K     +P   +S   I  SS+GLV   +ND     +V NP+ + W
Sbjct:    70 DLVGFHGCETWGLPKSLSFYIP---SSLCIIEGSSHGLVLISENDDDC-CFVGNPVLQQW 125

Query:   160 KKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQV--TGNFFQWELSIHIYDSDTMM 217
              K+  PP +  S +  +S  VD         +VK  +V  T N+    LS+ +Y S+T +
Sbjct:   126 IKIPPPP-VHSSVFGLVS-RVDDDGFVLGFKVVKLAEVIVTNNYVSCSLSVFVYSSETGI 183

Query:   218 WVTSWKEVLTGWRAGD-ESIICDGVLYF 244
             W    K +   ++  +  S   DG +YF
Sbjct:   184 WTC--KTIHCPYQITNFGSFTLDGTIYF 209

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M310	FBK77_ARATH	No assigned EC number	0.6722	0.9901	0.9756	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
pfam00646	48	pfam00646, F-box, F-box domain	3e-09
pfam12937	47	pfam12937, F-box-like, F-box-like	6e-09
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	9e-09
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	8e-05

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 43 LILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSN 87
          L LPDDLL  IL+ L    + R   V +RW  +V S +       
Sbjct: 4  LDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83
          LPD++L +I +YL    + R   VCRRW E+ S    LW
Sbjct: 4  LPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDS-LW 41

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 50.5 bits (122), Expect = 9e-09
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNF 85
          LPD++LE IL+ L    + R   V R+W  ++ S  F +  
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 33/200 (16%)

Query: 136 GLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALS-LSVDRVSHRYTVSIVKS 194
           GL+CF        L V NP +   + L  P   + +  S    L  D +  +Y V  +  
Sbjct: 6   GLICFSY---GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKV--LCF 60

Query: 195 KQVTGNFFQWELSIHIYDSDTMMWVTSWK--EVLTGWRAGDESIIC-DGVLYFLIYATGG 251
              +GN  Q E    +Y   +     SW+  E            +C +GVLY+L  A   
Sbjct: 61  SDRSGNRNQSEH--QVYTLGS----NSWRTIECSPPHHPLKSRGVCINGVLYYL--AYTL 112

Query: 252 GAPENRHGLISFNLSSRSSHALLIKSFIPVPC----ALTCGRLMNLKEKLVMVGGIGKQD 307
               +   ++SF++SS        K FIP+PC    ++    L+N K KL ++    K+D
Sbjct: 113 KTNPDYF-IVSFDVSSER-----FKEFIPLPCGNSDSVDYLSLINYKGKLAVL--KQKKD 164

Query: 308 RPDIIKGIGIWVLNGKEWQE 327
             +      +WVLN    QE
Sbjct: 165 TNNF----DLWVLNDAGKQE 180

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.94
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.9
PHA02713	557	hypothetical protein; Provisional	99.89
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.8
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.78
PHA02713	557	hypothetical protein; Provisional	99.78
PHA03098	534	kelch-like protein; Provisional	99.77
PHA02790	480	Kelch-like protein; Provisional	99.75
PLN02153	341	epithiospecifier protein	99.75
PLN02193	470	nitrile-specifier protein	99.71
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.71
PHA02790	480	Kelch-like protein; Provisional	99.71
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.67
PHA03098	534	kelch-like protein; Provisional	99.66
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.65
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.65
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.64
PLN02153	341	epithiospecifier protein	99.61
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.51
PLN02193	470	nitrile-specifier protein	99.51
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.14
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.07
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.98
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.94
KOG1230	521	consensus Protein containing repeated kelch motifs	98.9
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	98.87
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	98.77
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.74
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.68
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	98.66
KOG1230	521	consensus Protein containing repeated kelch motifs	98.6
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.06
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	97.98
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	97.84
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	97.47
PF13964	50	Kelch_6: Kelch motif	97.46
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	97.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.25
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.17
PF13964	50	Kelch_6: Kelch motif	97.03
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	96.88
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.78
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	96.75
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	96.55
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	96.45
smart00612	47	Kelch Kelch domain.	95.34
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.33
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	95.04
smart00612	47	Kelch Kelch domain.	94.95
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	94.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.8
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	94.35
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	94.11
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	94.1
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	94.06
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.61
PLN02772	398	guanylate kinase	93.58
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.03
KOG4341	483	consensus F-box protein containing LRR [General fu	92.58
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	92.52
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	92.52
PF13415	49	Kelch_3: Galactose oxidase, central domain	92.34
PF13415	49	Kelch_3: Galactose oxidase, central domain	92.08
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.46
PF13854	42	Kelch_5: Kelch motif	90.4
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	90.07
smart00284	255	OLF Olfactomedin-like domains.	89.83
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	89.1
KOG0293	519	consensus WD40 repeat-containing protein [Function	87.22
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	87.13
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	86.92
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	86.14
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	84.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	82.43
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	82.32
COG4946	668	Uncharacterized protein related to the periplasmic	81.59
KOG0316	307	consensus Conserved WD40 repeat-containing protein	81.44
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	81.26
PF13854	42	Kelch_5: Kelch motif	80.97
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	80.61
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	80.06

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.94  E-value=9.4e-25  Score=192.23  Aligned_cols=220  Identities=21%  Similarity=0.350  Sum_probs=148.9

Q ss_pred             EEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCC-CccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015502          131 IASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKF-SDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH  209 (405)
Q Consensus       131 ~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~-~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~  209 (405)
                      +++||||||+...   ..++||||.|++++.||+++.... .....+++++|+.+++|||+.+.......    ....++
T Consensus         1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~----~~~~~~   73 (230)
T TIGR01640         1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR----NQSEHQ   73 (230)
T ss_pred             CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC----CCccEE
Confidence            4789999988653   789999999999999997653211 11125789999999999999987532111    135789


Q ss_pred             EEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc---
Q 015502          210 IYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT---  286 (405)
Q Consensus       210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~---  286 (405)
                      ||++++++|+..... +........++++||.+||+.....   ......|++||+.+++|+.     .+++|....   
T Consensus        74 Vys~~~~~Wr~~~~~-~~~~~~~~~~v~~~G~lyw~~~~~~---~~~~~~IvsFDl~~E~f~~-----~i~~P~~~~~~~  144 (230)
T TIGR01640        74 VYTLGSNSWRTIECS-PPHHPLKSRGVCINGVLYYLAYTLK---TNPDYFIVSFDVSSERFKE-----FIPLPCGNSDSV  144 (230)
T ss_pred             EEEeCCCCccccccC-CCCccccCCeEEECCEEEEEEEECC---CCCcEEEEEEEcccceEee-----eeecCccccccc
Confidence            999999999998632 2221222348999999999986531   1122379999999999972     255565332   


Q ss_pred             -cCceEEeCCcEEEEEccccccccCccceEEEEEEeC---ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-
Q 015502          287 -CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG---KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-  361 (405)
Q Consensus       287 -~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~---~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  361 (405)
                       ...|++++|+|+++.....      ...++||.|++   .+|++..+++......+.....+.++... +.|++.... 
T Consensus       145 ~~~~L~~~~G~L~~v~~~~~------~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~-g~I~~~~~~~  217 (230)
T TIGR01640       145 DYLSLINYKGKLAVLKQKKD------TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDK-GEIVLCCEDE  217 (230)
T ss_pred             cceEEEEECCEEEEEEecCC------CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeC-CEEEEEeCCC
Confidence             3468899999999986421      24499999984   47999998874222222111123333444 555554432 


Q ss_pred             -CCeEEEEECCCC
Q 015502          362 -APSLLVYDMNLK  373 (405)
Q Consensus       362 -~~~~~~Yd~~~~  373 (405)
                       ...++.||++++
T Consensus       218 ~~~~~~~y~~~~~  230 (230)
T TIGR01640       218 NPFYIFYYNVGEN  230 (230)
T ss_pred             CceEEEEEeccCC
Confidence             234999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.90  E-value=1.2e-21  Score=191.87  Aligned_cols=247  Identities=17%  Similarity=0.220  Sum_probs=190.6

Q ss_pred             eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeEEE
Q 015502          105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS  179 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~  179 (405)
                      ....||+.++.|..+.....++....+++.+|.|+..++.+     .+.+++|||.+++|..+|+|...| ..+..+.+.
T Consensus       302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R-~~~~v~~l~  380 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR-SDFGVAVLD  380 (571)
T ss_pred             eeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc-ccceeEEEC
Confidence            56789999999999876556666667888899999998754     257999999999999999997655 323323332


Q ss_pred             EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccE
Q 015502          180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHG  259 (405)
Q Consensus       180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~  259 (405)
                             .+||++||....    .....++.||+.+++|.... +++. .+..+..+.++|+||.+|+..+  .......
T Consensus       381 -------g~iYavGG~dg~----~~l~svE~YDp~~~~W~~va-~m~~-~r~~~gv~~~~g~iYi~GG~~~--~~~~l~s  445 (571)
T KOG4441|consen  381 -------GKLYAVGGFDGE----KSLNSVECYDPVTNKWTPVA-PMLT-RRSGHGVAVLGGKLYIIGGGDG--SSNCLNS  445 (571)
T ss_pred             -------CEEEEEeccccc----cccccEEEecCCCCcccccC-CCCc-ceeeeEEEEECCEEEEEcCcCC--Cccccce
Confidence                   289999986522    22457999999999999975 4433 5667788899999999997542  1224578


Q ss_pred             EEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhcc
Q 015502          260 LISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGF  339 (405)
Q Consensus       260 i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~  339 (405)
                      +.+|||.+++|..     ..+|+..+....+++.+|+||+++|...   .....+++.|+...++|+.+..|+....   
T Consensus       446 ve~YDP~t~~W~~-----~~~M~~~R~~~g~a~~~~~iYvvGG~~~---~~~~~~VE~ydp~~~~W~~v~~m~~~rs---  514 (571)
T KOG4441|consen  446 VECYDPETNTWTL-----IAPMNTRRSGFGVAVLNGKIYVVGGFDG---TSALSSVERYDPETNQWTMVAPMTSPRS---  514 (571)
T ss_pred             EEEEcCCCCceee-----cCCcccccccceEEEECCEEEEECCccC---CCccceEEEEcCCCCceeEcccCccccc---
Confidence            9999999999984     4677777777789999999999999764   2235679999999999999988876432   


Q ss_pred             CCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCcEEEccCCCCC
Q 015502          340 GEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQWRWSHKCPVT  384 (405)
Q Consensus       340 ~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~w~~l~~~p~~  384 (405)
                           ..++...++.+|+...     ....+.+||+++++|+.++. |..
T Consensus       515 -----~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~-~~~  558 (571)
T KOG4441|consen  515 -----AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE-PES  558 (571)
T ss_pred             -----cccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC-ccc
Confidence                 2456667889998763     24689999999999999988 544

>PHA02713 hypothetical protein; Provisional

Probab=99.89  E-value=1.6e-21  Score=191.73  Aligned_cols=247  Identities=12%  Similarity=0.079  Sum_probs=177.4

Q ss_pred             eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeEEE
Q 015502          105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS  179 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~  179 (405)
                      ....||+..++|..++....++..+.++..+|.|++.++..     ...+++|||.+++|..+|+|+..+. .+..+  .
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~-~~~~~--~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC-RFSLA--V  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh-ceeEE--E
Confidence            35689999999998864334444455677789999987732     2568999999999999999986552 22222  2


Q ss_pred             EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCC------
Q 015502          180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGA------  253 (405)
Q Consensus       180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~------  253 (405)
                      .+.     +||++||....    .....+++||+.+++|...+ + ++..+.....+.++|+||++|+..+...      
T Consensus       350 ~~g-----~IYviGG~~~~----~~~~sve~Ydp~~~~W~~~~-~-mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~  418 (557)
T PHA02713        350 IDD-----TIYAIGGQNGT----NVERTIECYTMGDDKWKMLP-D-MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHH  418 (557)
T ss_pred             ECC-----EEEEECCcCCC----CCCceEEEEECCCCeEEECC-C-CCcccccccEEEECCEEEEEeCCCcccccccccc
Confidence            222     89999985311    11347999999999999864 3 3444555677888999999996532100      


Q ss_pred             ---------CCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeC-c
Q 015502          254 ---------PENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG-K  323 (405)
Q Consensus       254 ---------~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~-~  323 (405)
                               ......+.+||+.+++|+.     ..++|..+....+++.+|+||+++|.....  .....+++|+++. +
T Consensus       419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~-----v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~--~~~~~ve~Ydp~~~~  491 (557)
T PHA02713        419 MNSIDMEEDTHSSNKVIRYDTVNNIWET-----LPNFWTGTIRPGVVSHKDDIYVVCDIKDEK--NVKTCIFRYNTNTYN  491 (557)
T ss_pred             cccccccccccccceEEEECCCCCeEee-----cCCCCcccccCcEEEECCEEEEEeCCCCCC--ccceeEEEecCCCCC
Confidence                     0113579999999999984     356666666677999999999999864211  1234688999998 7


Q ss_pred             eeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC--CeEEEEECCCCcEEEccC
Q 015502          324 EWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA--PSLLVYDMNLKQWRWSHK  380 (405)
Q Consensus       324 ~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~Yd~~~~~w~~l~~  380 (405)
                      +|+.+..||....        ..++...++.||+....+  ..+.+||+.+++|+.+.+
T Consensus       492 ~W~~~~~m~~~r~--------~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        492 GWELITTTESRLS--------ALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             CeeEccccCcccc--------cceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence            9999999987533        234555688999986422  378999999999998864

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.80  E-value=4.1e-18  Score=167.07  Aligned_cols=220  Identities=16%  Similarity=0.200  Sum_probs=165.1

Q ss_pred             ecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceE
Q 015502          133 SSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELS  207 (405)
Q Consensus       133 s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~  207 (405)
                      +..+.|+..++..     .+.+..+||.+++|..++++|..+. ....+.+.-       +||++||...   .......
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~-------~lYv~GG~~~---~~~~l~~  350 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNG-------KLYVVGGYDS---GSDRLSS  350 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEECC-------EEEEEccccC---CCcccce
Confidence            5556666665533     3678899999999999999986553 222222221       8999998652   1122468


Q ss_pred             EEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015502          208 IHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC  287 (405)
Q Consensus       208 ~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~  287 (405)
                      ++.||+.+++|+..+  .+...+.....+.++|.||++|+..|   ......+.+||+.+++|+.     ..+++..+..
T Consensus       351 ve~YD~~~~~W~~~a--~M~~~R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~W~~-----va~m~~~r~~  420 (571)
T KOG4441|consen  351 VERYDPRTNQWTPVA--PMNTKRSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNKWTP-----VAPMLTRRSG  420 (571)
T ss_pred             EEEecCCCCceeccC--CccCccccceeEEECCEEEEEecccc---ccccccEEEecCCCCcccc-----cCCCCcceee
Confidence            999999999999964  25566777788999999999997653   3445689999999999984     3567766677


Q ss_pred             CceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----C
Q 015502          288 GRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----A  362 (405)
Q Consensus       288 ~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~  362 (405)
                      ...++.+|+||+++|.....  ....++++|+...+.|+.+..|+....        .+++...++.||+....     .
T Consensus       421 ~gv~~~~g~iYi~GG~~~~~--~~l~sve~YDP~t~~W~~~~~M~~~R~--------~~g~a~~~~~iYvvGG~~~~~~~  490 (571)
T KOG4441|consen  421 HGVAVLGGKLYIIGGGDGSS--NCLNSVECYDPETNTWTLIAPMNTRRS--------GFGVAVLNGKIYVVGGFDGTSAL  490 (571)
T ss_pred             eEEEEECCEEEEEcCcCCCc--cccceEEEEcCCCCceeecCCcccccc--------cceEEEECCEEEEECCccCCCcc
Confidence            78899999999999965432  146789999999999999999986432        23556678899988641     3


Q ss_pred             CeEEEEECCCCcEEEccCCCC
Q 015502          363 PSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       363 ~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      ..+..||+++++|..+.+++.
T Consensus       491 ~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  491 SSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             ceEEEEcCCCCceeEcccCcc
Confidence            568999999999999976654

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.78  E-value=5.7e-17  Score=147.40  Aligned_cols=294  Identities=18%  Similarity=0.219  Sum_probs=160.7

Q ss_pred             CCCCCHHHHHHHHhcCC-hhhhHHHhhcchhhHhhhcChhhhhhhcccCCCCCEEEEEecC-CCCeeEEecCCC---C--
Q 015502           42 DLILPDDLLERILAYLP-IASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSS-DEPIGYAYDPIL---R--  114 (405)
Q Consensus        42 ~~~LP~dll~~Il~~Lp-~~~l~r~r~VcK~W~~~i~~~~F~~~~~~~~~~~p~l~~~~~~-~~~~~~~~d~~~---~--  114 (405)
                      |++||+|||..|..+|| ..|+.|||+|||+||+.+....   . ....++.|++++.... ..+.. ..|+..   +  
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   78 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K-KNPFRTRPLILFNPINPSETLT-DDRSYISRPGAF   78 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c-cCCcccccccccCcccCCCCcc-ccccccccccce
Confidence            89999999999999997 8999999999999999987421   0 1112333665532210 11100 111100   0  


Q ss_pred             ----eeeeccCCCCCCCCeEEEecCceEEEEeCC-CCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEE
Q 015502          115 ----KWYGIELPCIETSNWFIASSYGLVCFMDND-SRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTV  189 (405)
Q Consensus       115 ----~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv  189 (405)
                          ..++++++        .++..|||.-.+.+ ..+.+.+.||+++.-..+|+-. .     ...-+.+....+.|.|
T Consensus        79 ls~~~~~r~~~~--------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~-l-----nll~f~v~ei~~~y~l  144 (373)
T PLN03215         79 LSRAAFFRVTLS--------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSES-V-----DLLEFTVSEIREAYQV  144 (373)
T ss_pred             eeeeEEEEeecC--------CCCCCCcEEEEeccccCCccEecCccccCccCCCCcc-c-----eeeeeEEEEccceEEE
Confidence                01111111        13568998887654 4577899999999976666311 0     0011111111111111


Q ss_pred             ----------------EEEeeeccCCCccc-cce------EEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeE
Q 015502          190 ----------------SIVKSKQVTGNFFQ-WEL------SIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLI  246 (405)
Q Consensus       190 ----------------~~~~~~~~~~~~~~-~~~------~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~  246 (405)
                                      +++. .. .++... ...      .+..+.  .++|+.+..    ........++++|++|.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~vl~i~~~g~l~~w~--~~~Wt~l~~----~~~~~~DIi~~kGkfYAvD  216 (373)
T PLN03215        145 LDWAKRRETRPGYQRSALVK-VK-EGDNHRDGVLGIGRDGKINYWD--GNVLKALKQ----MGYHFSDIIVHKGQTYALD  216 (373)
T ss_pred             EecccccccccceeEEEEEE-ee-cCCCcceEEEEEeecCcEeeec--CCeeeEccC----CCceeeEEEEECCEEEEEc
Confidence                            1111 00 000000 000      111122  478877642    1122346789999999996


Q ss_pred             EecCCCCCCCccEEEEEECCCC--cchhhhcccccccCC-c--cccCceEEeCCcEEEEEccccccc---------cCcc
Q 015502          247 YATGGGAPENRHGLISFNLSSR--SSHALLIKSFIPVPC-A--LTCGRLMNLKEKLVMVGGIGKQDR---------PDII  312 (405)
Q Consensus       247 ~~~~~~~~~~~~~i~~fD~~~~--~w~~~~~~~~~~~p~-~--~~~~~l~~~~G~L~~v~~~~~~~~---------~~~~  312 (405)
                      ..         ..+.++|..-+  +...++    ...+. .  ....+||++.|+|++|........         ...+
T Consensus       217 ~~---------G~l~~i~~~l~i~~v~~~i----~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t  283 (373)
T PLN03215        217 SI---------GIVYWINSDLEFSRFGTSL----DENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRT  283 (373)
T ss_pred             CC---------CeEEEEecCCceeeeccee----cccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccce
Confidence            43         26777774321  111100    00011 1  123569999999999987522110         0125


Q ss_pred             ceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEE------eeCCCEEEEEeCCCCeEEEEECCCCcEEEcc
Q 015502          313 KGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFAS------SGTDDLIYIQSYGAPSLLVYDMNLKQWRWSH  379 (405)
Q Consensus       313 ~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~  379 (405)
                      ..++||++|.  .+|++|.++....+- ++.. ..+++      ...+|.||+..  +....+||+++++-..+.
T Consensus       284 ~~f~VfklD~~~~~WveV~sLgd~aLF-lG~~-~s~sv~a~e~pG~k~NcIYFtd--d~~~~v~~~~dg~~~~~~  354 (373)
T PLN03215        284 VGFKVYKFDDELAKWMEVKTLGDNAFV-MATD-TCFSVLAHEFYGCLPNSIYFTE--DTMPKVFKLDNGNGSSIE  354 (373)
T ss_pred             eEEEEEEEcCCCCcEEEecccCCeEEE-EECC-ccEEEecCCCCCccCCEEEEEC--CCcceEEECCCCCccceE
Confidence            6799999994  689999999864321 1211 11111      23589999985  457889999999866654

>PHA02713 hypothetical protein; Provisional

Probab=99.78  E-value=1.7e-17  Score=163.34  Aligned_cols=209  Identities=12%  Similarity=0.149  Sum_probs=148.6

Q ss_pred             ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015502          147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL  226 (405)
Q Consensus       147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  226 (405)
                      ..+..|||.+++|..++++|..+. .+..+.  .+.     +||++||......   ....++.||+.++.|...+ + +
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~--l~~-----~IYviGG~~~~~~---~~~~v~~Yd~~~n~W~~~~-~-m  338 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHII-NYASAI--VDN-----EIIIAGGYNFNNP---SLNKVYKINIENKIHVELP-P-M  338 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCcccc-ceEEEE--ECC-----EEEEEcCCCCCCC---ccceEEEEECCCCeEeeCC-C-C
Confidence            457889999999999999886542 122222  222     7899987431111   1347899999999998864 3 3


Q ss_pred             ccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccc
Q 015502          227 TGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQ  306 (405)
Q Consensus       227 ~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~  306 (405)
                      +..+.....+.++|+||++|+..+   ......+.+||+.+++|+.     ..++|.......+++++|+||++||....
T Consensus       339 ~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~W~~-----~~~mp~~r~~~~~~~~~g~IYviGG~~~~  410 (557)
T PHA02713        339 IKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDKWKM-----LPDMPIALSSYGMCVLDQYIYIIGGRTEH  410 (557)
T ss_pred             cchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCeEEE-----CCCCCcccccccEEEECCEEEEEeCCCcc
Confidence            444556678889999999996532   2224579999999999984     45677766667788999999999986421


Q ss_pred             cc---------------cCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC------CeE
Q 015502          307 DR---------------PDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA------PSL  365 (405)
Q Consensus       307 ~~---------------~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~  365 (405)
                      ..               ......+++|+++.++|+.+..|+.....        .++...++.||+.....      ..+
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~--------~~~~~~~~~IYv~GG~~~~~~~~~~v  482 (557)
T PHA02713        411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR--------PGVVSHKDDIYVVCDIKDEKNVKTCI  482 (557)
T ss_pred             cccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc--------CcEEEECCEEEEEeCCCCCCccceeE
Confidence            10               01245688999999999999998764321        23445678899886421      357


Q ss_pred             EEEECCC-CcEEEccCCCCC
Q 015502          366 LVYDMNL-KQWRWSHKCPVT  384 (405)
Q Consensus       366 ~~Yd~~~-~~w~~l~~~p~~  384 (405)
                      .+||+++ ++|+.++++|..
T Consensus       483 e~Ydp~~~~~W~~~~~m~~~  502 (557)
T PHA02713        483 FRYNTNTYNGWELITTTESR  502 (557)
T ss_pred             EEecCCCCCCeeEccccCcc
Confidence            8999999 899999988853

>PHA03098 kelch-like protein; Provisional

Probab=99.77  E-value=4.4e-17  Score=161.48  Aligned_cols=247  Identities=13%  Similarity=0.130  Sum_probs=165.0

Q ss_pred             EecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeC
Q 015502          108 AYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDR  182 (405)
Q Consensus       108 ~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~  182 (405)
                      .|++...+|..+..... ...+.....++.|++.++..     .+.++.+||.|++|..+|+++.++. .+..+.  .+.
T Consensus       268 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~-~~~~~~--~~~  343 (534)
T PHA03098        268 TNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRK-NPGVTV--FNN  343 (534)
T ss_pred             ecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccc-cceEEE--ECC
Confidence            46666777776542211 12224555677777776532     2468999999999999999875542 222222  222


Q ss_pred             CCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEE
Q 015502          183 VSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLIS  262 (405)
Q Consensus       183 ~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~  262 (405)
                           +|+++||... .   .....+++||..+++|+... ++ +..+..+.++.++|+||++|+...  .......+..
T Consensus       344 -----~lyv~GG~~~-~---~~~~~v~~yd~~~~~W~~~~-~l-p~~r~~~~~~~~~~~iYv~GG~~~--~~~~~~~v~~  410 (534)
T PHA03098        344 -----RIYVIGGIYN-S---ISLNTVESWKPGESKWREEP-PL-IFPRYNPCVVNVNNLIYVIGGISK--NDELLKTVEC  410 (534)
T ss_pred             -----EEEEEeCCCC-C---EecceEEEEcCCCCceeeCC-Cc-CcCCccceEEEECCEEEEECCcCC--CCcccceEEE
Confidence                 7899987531 1   11347899999999999864 33 334555667888999999986431  1122457999


Q ss_pred             EECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCC
Q 015502          263 FNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEF  342 (405)
Q Consensus       263 fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~  342 (405)
                      ||+.+++|+.     ..++|.......++..+|+||+++|............+.+|+...++|+.+..++.....     
T Consensus       411 yd~~t~~W~~-----~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-----  480 (534)
T PHA03098        411 FSLNTNKWSK-----GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-----  480 (534)
T ss_pred             EeCCCCeeee-----cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc-----
Confidence            9999999985     345666555666788999999999864322111234578888888999999887643221     


Q ss_pred             CceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCcEEEccCCCCC
Q 015502          343 DDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQWRWSHKCPVT  384 (405)
Q Consensus       343 ~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~w~~l~~~p~~  384 (405)
                         .++...++.||+....     ...+.+||+++++|+.++..|..
T Consensus       481 ---~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  524 (534)
T PHA03098        481 ---ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKV  524 (534)
T ss_pred             ---ceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCccc
Confidence               1222247788886532     35899999999999999887653

>PHA02790 Kelch-like protein; Provisional

Probab=99.75  E-value=9.9e-17  Score=155.75  Aligned_cols=201  Identities=10%  Similarity=0.055  Sum_probs=145.6

Q ss_pred             EecCceEEEEeCCC----CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceE
Q 015502          132 ASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELS  207 (405)
Q Consensus       132 ~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~  207 (405)
                      ...++.|++.++..    ...++.|||.+++|..+|+|+.++.. ...+  ..+.     +||++||...       ...
T Consensus       268 ~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v--~~~~-----~iYviGG~~~-------~~s  332 (480)
T PHA02790        268 THVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV--PANN-----KLYVVGGLPN-------PTS  332 (480)
T ss_pred             EEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE--EECC-----EEEEECCcCC-------CCc
Confidence            34677777776632    24688999999999999998765522 2222  2222     8999987531       136


Q ss_pred             EEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015502          208 IHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC  287 (405)
Q Consensus       208 ~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~  287 (405)
                      ++.|++.+++|...+ ++ +..+..+..+.++|+||++|+..+     ....+.+||+.+++|+.     ..++|..+..
T Consensus       333 ve~ydp~~n~W~~~~-~l-~~~r~~~~~~~~~g~IYviGG~~~-----~~~~ve~ydp~~~~W~~-----~~~m~~~r~~  400 (480)
T PHA02790        333 VERWFHGDAAWVNMP-SL-LKPRCNPAVASINNVIYVIGGHSE-----TDTTTEYLLPNHDQWQF-----GPSTYYPHYK  400 (480)
T ss_pred             eEEEECCCCeEEECC-CC-CCCCcccEEEEECCEEEEecCcCC-----CCccEEEEeCCCCEEEe-----CCCCCCcccc
Confidence            899999999998864 33 344556678889999999996431     12468899999999984     3455555555


Q ss_pred             CceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----C
Q 015502          288 GRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----A  362 (405)
Q Consensus       288 ~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~  362 (405)
                      ..+++.+|+||++|+.           +++|+++.++|+.+..|+.....        .++...++.||+.+..     .
T Consensus       401 ~~~~~~~~~IYv~GG~-----------~e~ydp~~~~W~~~~~m~~~r~~--------~~~~v~~~~IYviGG~~~~~~~  461 (480)
T PHA02790        401 SCALVFGRRLFLVGRN-----------AEFYCESSNTWTLIDDPIYPRDN--------PELIIVDNKLLLIGGFYRGSYI  461 (480)
T ss_pred             ceEEEECCEEEEECCc-----------eEEecCCCCcEeEcCCCCCCccc--------cEEEEECCEEEEECCcCCCccc
Confidence            6778999999999862           67899999999999988753321        2445568889987641     2


Q ss_pred             CeEEEEECCCCcEEEc
Q 015502          363 PSLLVYDMNLKQWRWS  378 (405)
Q Consensus       363 ~~~~~Yd~~~~~w~~l  378 (405)
                      ..+.+||+++++|+.-
T Consensus       462 ~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        462 DTIEVYNNRTYSWNIW  477 (480)
T ss_pred             ceEEEEECCCCeEEec
Confidence            5799999999999754

>PLN02153 epithiospecifier protein

Probab=99.75  E-value=8.2e-16  Score=143.53  Aligned_cols=248  Identities=15%  Similarity=0.107  Sum_probs=155.1

Q ss_pred             CCCeeeeccCC----CCCCCCeEEEecCceEEEEeCCC------CceEEEEeCcccceeeccCCCC-CCCCccceeEEEE
Q 015502          112 ILRKWYGIELP----CIETSNWFIASSYGLVCFMDNDS------RSELYVCNPISKSWKKLEEPPG-LKFSDYSALSLSV  180 (405)
Q Consensus       112 ~~~~w~~~~~p----~~~~~~~~~~s~~Gll~~~~~~~------~~~~~v~NP~T~~~~~lP~~~~-~~~~~~~~~~~~~  180 (405)
                      ..+.|..+...    +.++..+.+++.++.|++.++..      .+.++++|+.+++|..+++++. ++.......+..+
T Consensus         5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~   84 (341)
T PLN02153          5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV   84 (341)
T ss_pred             cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence            45668776541    23444555667788888876632      1479999999999999987642 2211111112222


Q ss_pred             eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc----cccccCCCccEEECcEEEeeEEecCCC---C
Q 015502          181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV----LTGWRAGDESIICDGVLYFLIYATGGG---A  253 (405)
Q Consensus       181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~----~~~~~~~~~~v~~~g~iy~l~~~~~~~---~  253 (405)
                      +.     +|+++|+.....    ....+++||..+++|+.... +    .+..+..+.++.++++||++++.....   .
T Consensus        85 ~~-----~iyv~GG~~~~~----~~~~v~~yd~~t~~W~~~~~-~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~  154 (341)
T PLN02153         85 GT-----KLYIFGGRDEKR----EFSDFYSYDTVKNEWTFLTK-LDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKT  154 (341)
T ss_pred             CC-----EEEEECCCCCCC----ccCcEEEEECCCCEEEEecc-CCCCCCCCCceeeEEEEECCEEEEECCccCCCccCC
Confidence            22     789998753211    13478999999999987642 1    123344566788899999998653110   0


Q ss_pred             CCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcccccc-----ccCccceEEEEEEeCceeEEE
Q 015502          254 PENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQD-----RPDIIKGIGIWVLNGKEWQEV  328 (405)
Q Consensus       254 ~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~-----~~~~~~~~~vw~l~~~~W~~v  328 (405)
                      ......+.+||+.+++|..+-.  ....|..+....+++.+|+||++++.....     .......+++|+++..+|+++
T Consensus       155 ~~~~~~v~~yd~~~~~W~~l~~--~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~  232 (341)
T PLN02153        155 PERFRTIEAYNIADGKWVQLPD--PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV  232 (341)
T ss_pred             CcccceEEEEECCCCeEeeCCC--CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence            1112468999999999985311  111223344446788999999998753110     001135688888889999998


Q ss_pred             ecc---ChhHHhccCCCCceeEEeeCCCEEEEEeCC--------------CCeEEEEECCCCcEEEcc
Q 015502          329 ARM---PHKFFQGFGEFDDVFASSGTDDLIYIQSYG--------------APSLLVYDMNLKQWRWSH  379 (405)
Q Consensus       329 ~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~~~~Yd~~~~~w~~l~  379 (405)
                      ..+   |...        ...++...++.||+....              ...+++||+++++|+.+.
T Consensus       233 ~~~g~~P~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~  292 (341)
T PLN02153        233 ETTGAKPSAR--------SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG  292 (341)
T ss_pred             cccCCCCCCc--------ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence            653   3221        112334456788876532              137899999999999986

>PLN02193 nitrile-specifier protein

Probab=99.71  E-value=7.7e-15  Score=142.21  Aligned_cols=246  Identities=15%  Similarity=0.107  Sum_probs=156.7

Q ss_pred             CeeeeccCC---CCCCCCeEEEecCceEEEEeCCC------CceEEEEeCcccceeeccCCC-CCCCCccceeEEEEeCC
Q 015502          114 RKWYGIELP---CIETSNWFIASSYGLVCFMDNDS------RSELYVCNPISKSWKKLEEPP-GLKFSDYSALSLSVDRV  183 (405)
Q Consensus       114 ~~w~~~~~p---~~~~~~~~~~s~~Gll~~~~~~~------~~~~~v~NP~T~~~~~lP~~~-~~~~~~~~~~~~~~~~~  183 (405)
                      ++|..+...   +.++..+.++..++.|++.++..      ...++++|+.+++|..+|.+. .++.......+...+. 
T Consensus       151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~-  229 (470)
T PLN02193        151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS-  229 (470)
T ss_pred             ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC-
Confidence            789987642   23455556666777888876631      146899999999999887542 1111111112222222 


Q ss_pred             CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc-ccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEE
Q 015502          184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE-VLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLIS  262 (405)
Q Consensus       184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~-~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~  262 (405)
                          +|+++|+....    .....+++||+.+++|+..... ..+..+..+..+.++++||++++..+   ......+.+
T Consensus       230 ----~lYvfGG~~~~----~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~---~~~~~~~~~  298 (470)
T PLN02193        230 ----TLYVFGGRDAS----RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA---TARLKTLDS  298 (470)
T ss_pred             ----EEEEECCCCCC----CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC---CCCcceEEE
Confidence                78888875321    1135789999999999986421 01233555667788999999986532   223457899


Q ss_pred             EECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCC
Q 015502          263 FNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEF  342 (405)
Q Consensus       263 fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~  342 (405)
                      ||+.+++|+.+...  ..+|..+....+++.+|+||++++....    ....+.+|+++.++|+++..+......     
T Consensus       299 yd~~t~~W~~~~~~--~~~~~~R~~~~~~~~~gkiyviGG~~g~----~~~dv~~yD~~t~~W~~~~~~g~~P~~-----  367 (470)
T PLN02193        299 YNIVDKKWFHCSTP--GDSFSIRGGAGLEVVQGKVWVVYGFNGC----EVDDVHYYDPVQDKWTQVETFGVRPSE-----  367 (470)
T ss_pred             EECCCCEEEeCCCC--CCCCCCCCCcEEEEECCcEEEEECCCCC----ccCceEEEECCCCEEEEeccCCCCCCC-----
Confidence            99999999854211  1233334455677889999999985321    245688888888999998765211000     


Q ss_pred             CceeEEeeCCCEEEEEeCC--------------CCeEEEEECCCCcEEEccCCC
Q 015502          343 DDVFASSGTDDLIYIQSYG--------------APSLLVYDMNLKQWRWSHKCP  382 (405)
Q Consensus       343 ~~~~~~~~~~~~i~~~~~~--------------~~~~~~Yd~~~~~w~~l~~~p  382 (405)
                      ....++...++.||+....              ...+.+||+++++|+.++..+
T Consensus       368 R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~  421 (470)
T PLN02193        368 RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG  421 (470)
T ss_pred             cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence            0112334456778876431              125899999999999997543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.71  E-value=2.9e-15  Score=140.32  Aligned_cols=238  Identities=16%  Similarity=0.146  Sum_probs=148.3

Q ss_pred             EEEecCceEEEEeCCCCceEEEEeC--cccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCC--ccccc
Q 015502          130 FIASSYGLVCFMDNDSRSELYVCNP--ISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGN--FFQWE  205 (405)
Q Consensus       130 ~~~s~~Gll~~~~~~~~~~~~v~NP--~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~--~~~~~  205 (405)
                      ..++.++.|++.++.....++++|+  .+++|..+|++|...+..+..+  ..+.     +||++|+......  .....
T Consensus        12 ~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~--~~~~-----~iYv~GG~~~~~~~~~~~~~   84 (346)
T TIGR03547        12 TGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAA--AIDG-----KLYVFGGIGKANSEGSPQVF   84 (346)
T ss_pred             eEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEE--EECC-----EEEEEeCCCCCCCCCcceec
Confidence            4556688888887755577889985  7789999999874222222222  2222     7999998532110  00113


Q ss_pred             eEEEEEeCCCCCcccccccccccccCCCccE-EECcEEEeeEEecCCC--C----------C------------------
Q 015502          206 LSIHIYDSDTMMWVTSWKEVLTGWRAGDESI-ICDGVLYFLIYATGGG--A----------P------------------  254 (405)
Q Consensus       206 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v-~~~g~iy~l~~~~~~~--~----------~------------------  254 (405)
                      ..++.||+.+++|+....+ ++..+..+.++ .++|+||++++..+..  .          .                  
T Consensus        85 ~~v~~Yd~~~~~W~~~~~~-~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (346)
T TIGR03547        85 DDVYRYDPKKNSWQKLDTR-SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED  163 (346)
T ss_pred             ccEEEEECCCCEEecCCCC-CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence            4789999999999997532 22223333344 6899999998653100  0          0                  


Q ss_pred             -CCccEEEEEECCCCcchhhhcccccccCC-ccccCceEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEec
Q 015502          255 -ENRHGLISFNLSSRSSHALLIKSFIPVPC-ALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVAR  330 (405)
Q Consensus       255 -~~~~~i~~fD~~~~~w~~~~~~~~~~~p~-~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~  330 (405)
                       .....+.+||+.+++|+.+     .++|. ......++..+|+||++++.....  .....+.+++++.  .+|+++..
T Consensus       164 ~~~~~~v~~YDp~t~~W~~~-----~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~y~~~~~~~~W~~~~~  236 (346)
T TIGR03547       164 YFWNKNVLSYDPSTNQWRNL-----GENPFLGTAGSAIVHKGNKLLLINGEIKPG--LRTAEVKQYLFTGGKLEWNKLPP  236 (346)
T ss_pred             cCccceEEEEECCCCceeEC-----ccCCCCcCCCceEEEECCEEEEEeeeeCCC--ccchheEEEEecCCCceeeecCC
Confidence             0125799999999999853     45554 344556788999999999863221  1123455566653  59999999


Q ss_pred             cChhHHhccCCCCceeEEeeCCCEEEEEeCCC----------------------CeEEEEECCCCcEEEccCCCC
Q 015502          331 MPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA----------------------PSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       331 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      ||.......... ....+...++.||+.....                      ..+.+||+++++|+.++++|.
T Consensus       237 m~~~r~~~~~~~-~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~  310 (346)
T TIGR03547       237 LPPPKSSSQEGL-AGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ  310 (346)
T ss_pred             CCCCCCCccccc-cEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence            875321100000 0111233577888865311                      257899999999999998875

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02790 Kelch-like protein; Provisional

Probab=99.71  E-value=7.5e-16  Score=149.61  Aligned_cols=188  Identities=10%  Similarity=0.057  Sum_probs=140.1

Q ss_pred             eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCC-CCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC
Q 015502          105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDND-SRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV  183 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~  183 (405)
                      ....|||..++|..++....++.....++.+|.|++.++. ....+..|||.+++|..+|++|.++. .+.  +...++ 
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~-~~~--~~~~~g-  363 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC-NPA--VASINN-  363 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc-ccE--EEEECC-
Confidence            4567999999999887555555555667789999998874 23568899999999999999986552 222  223333 


Q ss_pred             CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEE
Q 015502          184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISF  263 (405)
Q Consensus       184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~f  263 (405)
                          +||++||...  .    ...++.||+++++|+..+ + +...+..+.++.++|+||++|+           ...+|
T Consensus       364 ----~IYviGG~~~--~----~~~ve~ydp~~~~W~~~~-~-m~~~r~~~~~~~~~~~IYv~GG-----------~~e~y  420 (480)
T PHA02790        364 ----VIYVIGGHSE--T----DTTTEYLLPNHDQWQFGP-S-TYYPHYKSCALVFGRRLFLVGR-----------NAEFY  420 (480)
T ss_pred             ----EEEEecCcCC--C----CccEEEEeCCCCEEEeCC-C-CCCccccceEEEECCEEEEECC-----------ceEEe
Confidence                8999988531  1    236889999999999864 3 3333445567789999999983           36789


Q ss_pred             ECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEE
Q 015502          264 NLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQE  327 (405)
Q Consensus       264 D~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~  327 (405)
                      |+++++|+.     ..++|..+....+++.+|+||++||....   .....+++|+.+.++|+.
T Consensus       421 dp~~~~W~~-----~~~m~~~r~~~~~~v~~~~IYviGG~~~~---~~~~~ve~Yd~~~~~W~~  476 (480)
T PHA02790        421 CESSNTWTL-----IDDPIYPRDNPELIIVDNKLLLIGGFYRG---SYIDTIEVYNNRTYSWNI  476 (480)
T ss_pred             cCCCCcEeE-----cCCCCCCccccEEEEECCEEEEECCcCCC---cccceEEEEECCCCeEEe
Confidence            999999984     34666666677899999999999986422   124679999999999975

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.67  E-value=6.8e-14  Score=132.14  Aligned_cols=263  Identities=16%  Similarity=0.133  Sum_probs=162.0

Q ss_pred             CEEEEEecCCCCeeEEecCC--CCeeeecc-CCCCCCCCeEEEecCceEEEEeCCCC----------ceEEEEeCcccce
Q 015502           93 PWYFMFTSSDEPIGYAYDPI--LRKWYGIE-LPCIETSNWFIASSYGLVCFMDNDSR----------SELYVCNPISKSW  159 (405)
Q Consensus        93 p~l~~~~~~~~~~~~~~d~~--~~~w~~~~-~p~~~~~~~~~~s~~Gll~~~~~~~~----------~~~~v~NP~T~~~  159 (405)
                      ..++++........+.||..  .+.|..++ +|..++....+++.+|.|++.++...          ..+++|||.+++|
T Consensus        39 ~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W  118 (376)
T PRK14131         39 NTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW  118 (376)
T ss_pred             CEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEE
Confidence            34444433333345677765  47898775 33334444556778899999876421          4689999999999


Q ss_pred             eeccCC-CCCCCCccceeEEE-EeCCCCcEEEEEEeeeccCC--C--------------------------cc--ccceE
Q 015502          160 KKLEEP-PGLKFSDYSALSLS-VDRVSHRYTVSIVKSKQVTG--N--------------------------FF--QWELS  207 (405)
Q Consensus       160 ~~lP~~-~~~~~~~~~~~~~~-~~~~~~~ykv~~~~~~~~~~--~--------------------------~~--~~~~~  207 (405)
                      ..++++ |..+   ....+.. .+.     +||++|+.....  .                          ..  .....
T Consensus       119 ~~~~~~~p~~~---~~~~~~~~~~~-----~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (376)
T PRK14131        119 QKLDTRSPVGL---AGHVAVSLHNG-----KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKE  190 (376)
T ss_pred             EeCCCCCCCcc---cceEEEEeeCC-----EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCce
Confidence            999853 2211   1122222 332     899998753100  0                          00  01246


Q ss_pred             EEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc-
Q 015502          208 IHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT-  286 (405)
Q Consensus       208 ~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~-  286 (405)
                      +++||..++.|+... +++...+..+..+.++++||++++....+..........||+++++|..+     .++|.... 
T Consensus       191 v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~-----~~~p~~~~~  264 (376)
T PRK14131        191 VLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKL-----PDLPPAPGG  264 (376)
T ss_pred             EEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeec-----CCCCCCCcC
Confidence            899999999999865 34332344556677899999999753211112223455678899999853     34443221 


Q ss_pred             -------cCceEEeCCcEEEEEccccccc--------------cCccceEEEEEEeCceeEEEeccChhHHhccCCCCce
Q 015502          287 -------CGRLMNLKEKLVMVGGIGKQDR--------------PDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDV  345 (405)
Q Consensus       287 -------~~~l~~~~G~L~~v~~~~~~~~--------------~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~  345 (405)
                             ....++.+|+||++++......              ......+++|+++.++|+.+..||.....        
T Consensus       265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~--------  336 (376)
T PRK14131        265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY--------  336 (376)
T ss_pred             CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc--------
Confidence                   1124678999999998642110              00112478999999999999988864321        


Q ss_pred             eEEeeCCCEEEEEeCC------CCeEEEEECCCCcEEE
Q 015502          346 FASSGTDDLIYIQSYG------APSLLVYDMNLKQWRW  377 (405)
Q Consensus       346 ~~~~~~~~~i~~~~~~------~~~~~~Yd~~~~~w~~  377 (405)
                      .++...++.||+....      ...+..|+++++++..
T Consensus       337 ~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        337 GVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             eEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            1334567778887531      2488899999888754

>PHA03098 kelch-like protein; Provisional

Probab=99.66  E-value=1.2e-14  Score=144.07  Aligned_cols=208  Identities=13%  Similarity=0.146  Sum_probs=145.8

Q ss_pred             eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC----CceEEEEeCcccceeeccCCCCCCCCccceeEEEE
Q 015502          105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV  180 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~  180 (405)
                      ....||+.+++|..++....++..+.+++.+|.|++.++..    ...+++|||.|++|..++++|.++.. ..  +...
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~--~~~~  388 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PC--VVNV  388 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ce--EEEE
Confidence            35689999999988764444555556677789998887743    25689999999999999988765522 22  2222


Q ss_pred             eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEE
Q 015502          181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGL  260 (405)
Q Consensus       181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i  260 (405)
                      +.     +|+++||.......   ...+++||..+++|+... ++ +..+..+.++.++|+||++|+..+.+.......+
T Consensus       389 ~~-----~iYv~GG~~~~~~~---~~~v~~yd~~t~~W~~~~-~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v  458 (534)
T PHA03098        389 NN-----LIYVIGGISKNDEL---LKTVECFSLNTNKWSKGS-PL-PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIV  458 (534)
T ss_pred             CC-----EEEEECCcCCCCcc---cceEEEEeCCCCeeeecC-CC-CccccCceEEEECCEEEEECCccCCCCCcccceE
Confidence            22     78998874322111   357899999999999874 33 3334556778889999999865321111113459


Q ss_pred             EEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccCh
Q 015502          261 ISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPH  333 (405)
Q Consensus       261 ~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~  333 (405)
                      .+||+.+++|+.+     .++|.......++..+|+||+++|....   .....+++|+++.++|+.+..+|.
T Consensus       459 ~~yd~~~~~W~~~-----~~~~~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        459 ESYNPVTNKWTEL-----SSLNFPRINASLCIFNNKIYVVGGDKYE---YYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             EEecCCCCceeeC-----CCCCcccccceEEEECCEEEEEcCCcCC---cccceeEEEeCCCCEEEecCCCcc
Confidence            9999999999853     3445445555678889999999986422   124568899888999999988775

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.65  E-value=2.4e-14  Score=135.28  Aligned_cols=237  Identities=15%  Similarity=0.100  Sum_probs=143.3

Q ss_pred             EEEecCceEEEEeCCCCceEEEEeCc--ccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCC--ccccc
Q 015502          130 FIASSYGLVCFMDNDSRSELYVCNPI--SKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGN--FFQWE  205 (405)
Q Consensus       130 ~~~s~~Gll~~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~--~~~~~  205 (405)
                      ..++.++-|++.++.....++++|+.  +++|..+|++|...+..+..+  ..+.     +||++|+......  .....
T Consensus        33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v--~~~~-----~IYV~GG~~~~~~~~~~~~~  105 (376)
T PRK14131         33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAA--FIDG-----KLYVFGGIGKTNSEGSPQVF  105 (376)
T ss_pred             eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEE--EECC-----EEEEEcCCCCCCCCCceeEc
Confidence            45567888888766545678888875  579999998764222222222  2222     7899987532110  01113


Q ss_pred             eEEEEEeCCCCCcccccccccccccCCCccEE-ECcEEEeeEEecCC--CC-----------------------------
Q 015502          206 LSIHIYDSDTMMWVTSWKEVLTGWRAGDESII-CDGVLYFLIYATGG--GA-----------------------------  253 (405)
Q Consensus       206 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~-~~g~iy~l~~~~~~--~~-----------------------------  253 (405)
                      ..+++||..+++|+.... ..+..+..+.++. ++++||++|+..+.  ..                             
T Consensus       106 ~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~  184 (376)
T PRK14131        106 DDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED  184 (376)
T ss_pred             ccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence            468999999999999753 2222233344444 79999999864310  00                             


Q ss_pred             CCCccEEEEEECCCCcchhhhcccccccCC-ccccCceEEeCCcEEEEEccccccccCccceEEEEEEe--CceeEEEec
Q 015502          254 PENRHGLISFNLSSRSSHALLIKSFIPVPC-ALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQEVAR  330 (405)
Q Consensus       254 ~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~-~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~~v~~  330 (405)
                      ......+.+||+.+++|+.+     .++|. ......++..+++||++++.....  .....+.+++++  +.+|+++..
T Consensus       185 ~~~~~~v~~YD~~t~~W~~~-----~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~--~~~~~~~~~~~~~~~~~W~~~~~  257 (376)
T PRK14131        185 YFFNKEVLSYDPSTNQWKNA-----GESPFLGTAGSAVVIKGNKLWLINGEIKPG--LRTDAVKQGKFTGNNLKWQKLPD  257 (376)
T ss_pred             cCcCceEEEEECCCCeeeEC-----CcCCCCCCCcceEEEECCEEEEEeeeECCC--cCChhheEEEecCCCcceeecCC
Confidence            00125799999999999852     34553 344455778899999999853221  112233344443  479999999


Q ss_pred             cChhHHhccCCCCceeE--EeeCCCEEEEEeCCC----------------------CeEEEEECCCCcEEEccCCCC
Q 015502          331 MPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGA----------------------PSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       331 i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~----------------------~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      ||........  ....+  ....++.||+.....                      ..+.+||+++++|+.++.+|.
T Consensus       258 ~p~~~~~~~~--~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~  332 (376)
T PRK14131        258 LPPAPGGSSQ--EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ  332 (376)
T ss_pred             CCCCCcCCcC--CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC
Confidence            8753211000  00111  123466788765311                      135689999999999988775

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.65  E-value=1e-13  Score=128.50  Aligned_cols=226  Identities=14%  Similarity=0.098  Sum_probs=140.6

Q ss_pred             EEEecCceEEEEeCCCC--------------ceEEEEe-Cccc-ceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEe
Q 015502          130 FIASSYGLVCFMDNDSR--------------SELYVCN-PISK-SWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVK  193 (405)
Q Consensus       130 ~~~s~~Gll~~~~~~~~--------------~~~~v~N-P~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~  193 (405)
                      .++..++.|++.++.+.              ..+++++ +..+ +|..++++|.++.. ...+  ..+.     +|+++|
T Consensus         8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~-~~~~--~~~~-----~lyviG   79 (323)
T TIGR03548         8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAY-GASV--SVEN-----GIYYIG   79 (323)
T ss_pred             eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccc-eEEE--EECC-----EEEEEc
Confidence            45556666777665321              2577774 5433 79999988765532 2222  2222     688888


Q ss_pred             eeccCCCccccceEEEEEeCCCCCc----ccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015502          194 SKQVTGNFFQWELSIHIYDSDTMMW----VTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS  269 (405)
Q Consensus       194 ~~~~~~~~~~~~~~~~vy~s~~~~W----~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~  269 (405)
                      +....    .....++.||..++.|    ... .++ +..+..+.+++++++||++++..   .......+.+||+.+++
T Consensus        80 G~~~~----~~~~~v~~~d~~~~~w~~~~~~~-~~l-p~~~~~~~~~~~~~~iYv~GG~~---~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        80 GSNSS----ERFSSVYRITLDESKEELICETI-GNL-PFTFENGSACYKDGTLYVGGGNR---NGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCCCC----CCceeEEEEEEcCCceeeeeeEc-CCC-CcCccCceEEEECCEEEEEeCcC---CCccCceEEEEcCCCCC
Confidence            74311    1135788999999988    333 233 33344566788899999998642   12234679999999999


Q ss_pred             chhhhcccccccCC-ccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE
Q 015502          270 SHALLIKSFIPVPC-ALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS  348 (405)
Q Consensus       270 w~~~~~~~~~~~p~-~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~  348 (405)
                      |+.+     .++|. .+....++..+|+||++++....    ....+.+|++++++|+.+..|+.......  .....++
T Consensus       151 W~~~-----~~~p~~~r~~~~~~~~~~~iYv~GG~~~~----~~~~~~~yd~~~~~W~~~~~~~~~~~p~~--~~~~~~~  219 (323)
T TIGR03548       151 WFEL-----PDFPGEPRVQPVCVKLQNELYVFGGGSNI----AYTDGYKYSPKKNQWQKVADPTTDSEPIS--LLGAASI  219 (323)
T ss_pred             eeEC-----CCCCCCCCCcceEEEECCEEEEEcCCCCc----cccceEEEecCCCeeEECCCCCCCCCcee--ccceeEE
Confidence            9853     33443 34444567899999999986421    12346788888899999887642100000  0011123


Q ss_pred             eeCCCEEEEEeCC-------------------------------------CCeEEEEECCCCcEEEccCCCC
Q 015502          349 SGTDDLIYIQSYG-------------------------------------APSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       349 ~~~~~~i~~~~~~-------------------------------------~~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      ...++.||+....                                     ...+.+||+++++|+.++.+|.
T Consensus       220 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~  291 (323)
T TIGR03548       220 KINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF  291 (323)
T ss_pred             EECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc
Confidence            3356677776431                                     1469999999999999987763

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.64  E-value=9.4e-14  Score=130.09  Aligned_cols=243  Identities=15%  Similarity=0.148  Sum_probs=149.2

Q ss_pred             EEEEEecCCCCeeEEecC--CCCeeeeccC-CCCCCCCeEEEecCceEEEEeCCC----------CceEEEEeCccccee
Q 015502           94 WYFMFTSSDEPIGYAYDP--ILRKWYGIEL-PCIETSNWFIASSYGLVCFMDNDS----------RSELYVCNPISKSWK  160 (405)
Q Consensus        94 ~l~~~~~~~~~~~~~~d~--~~~~w~~~~~-p~~~~~~~~~~s~~Gll~~~~~~~----------~~~~~v~NP~T~~~~  160 (405)
                      .+++.........+.||+  ..++|..++. |..++....+++.+|.|++.++..          ...+++|||.+++|.
T Consensus        19 ~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~   98 (346)
T TIGR03547        19 KVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ   98 (346)
T ss_pred             EEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence            344433322234566775  5678998763 333455556778899999987642          146899999999999


Q ss_pred             eccC-CCCCCCCccceeEE-EEeCCCCcEEEEEEeeeccCC--Cc----------------------------cccceEE
Q 015502          161 KLEE-PPGLKFSDYSALSL-SVDRVSHRYTVSIVKSKQVTG--NF----------------------------FQWELSI  208 (405)
Q Consensus       161 ~lP~-~~~~~~~~~~~~~~-~~~~~~~~ykv~~~~~~~~~~--~~----------------------------~~~~~~~  208 (405)
                      .++. +|..+   ....++ ..+.     +|+++|+.....  ..                            ......+
T Consensus        99 ~~~~~~p~~~---~~~~~~~~~~g-----~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  170 (346)
T TIGR03547        99 KLDTRSPVGL---LGASGFSLHNG-----QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV  170 (346)
T ss_pred             cCCCCCCCcc---cceeEEEEeCC-----EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence            9974 33222   222222 2232     899998753110  00                            0012479


Q ss_pred             EEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEE--ECCCCcchhhhcccccccCCcc-
Q 015502          209 HIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISF--NLSSRSSHALLIKSFIPVPCAL-  285 (405)
Q Consensus       209 ~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~f--D~~~~~w~~~~~~~~~~~p~~~-  285 (405)
                      ++||+.+++|+... +++...+..+..+.++|+||++++....  ......+..|  |+++++|+.+     .++|... 
T Consensus       171 ~~YDp~t~~W~~~~-~~p~~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~y~~~~~~~~W~~~-----~~m~~~r~  242 (346)
T TIGR03547       171 LSYDPSTNQWRNLG-ENPFLGTAGSAIVHKGNKLLLINGEIKP--GLRTAEVKQYLFTGGKLEWNKL-----PPLPPPKS  242 (346)
T ss_pred             EEEECCCCceeECc-cCCCCcCCCceEEEECCEEEEEeeeeCC--CccchheEEEEecCCCceeeec-----CCCCCCCC
Confidence            99999999999974 4433234455667889999999975321  1111234444  5577799853     3444322 


Q ss_pred             ------ccCceEEeCCcEEEEEccccccc--------------cCccceEEEEEEeCceeEEEeccChhHHhccCCCCce
Q 015502          286 ------TCGRLMNLKEKLVMVGGIGKQDR--------------PDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDV  345 (405)
Q Consensus       286 ------~~~~l~~~~G~L~~v~~~~~~~~--------------~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~  345 (405)
                            ....+++.+|+||++++......              ......+++|+++.++|+.+..||....        .
T Consensus       243 ~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~--------~  314 (346)
T TIGR03547       243 SSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA--------Y  314 (346)
T ss_pred             CccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce--------e
Confidence                  11236788999999998642110              0012368999999999999999986422        1


Q ss_pred             eEEeeCCCEEEEEeC
Q 015502          346 FASSGTDDLIYIQSY  360 (405)
Q Consensus       346 ~~~~~~~~~i~~~~~  360 (405)
                      .++...++.||+...
T Consensus       315 ~~~~~~~~~iyv~GG  329 (346)
T TIGR03547       315 GVSVSWNNGVLLIGG  329 (346)
T ss_pred             eEEEEcCCEEEEEec
Confidence            233456888888763

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=99.61  E-value=2.7e-13  Score=126.63  Aligned_cols=216  Identities=13%  Similarity=0.097  Sum_probs=134.4

Q ss_pred             eeEEecCCCCeeeeccCC-CCCCC---CeEEEecCceEEEEeCCC----CceEEEEeCcccceeeccCC-----CCCCCC
Q 015502          105 IGYAYDPILRKWYGIELP-CIETS---NWFIASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEP-----PGLKFS  171 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p-~~~~~---~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~-----~~~~~~  171 (405)
                      ..+.||+..++|..++.. ..++.   .+.+++.++.|++.++..    ...++++||.|++|..++++     |..+ .
T Consensus        51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R-~  129 (341)
T PLN02153         51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR-T  129 (341)
T ss_pred             cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc-e
Confidence            467899999999987532 23332   234667788888887632    24789999999999999876     3222 1


Q ss_pred             ccceeEEEEeCCCCcEEEEEEeeeccCCCc--cccceEEEEEeCCCCCcccccccc-cccccCCCccEEECcEEEeeEEe
Q 015502          172 DYSALSLSVDRVSHRYTVSIVKSKQVTGNF--FQWELSIHIYDSDTMMWVTSWKEV-LTGWRAGDESIICDGVLYFLIYA  248 (405)
Q Consensus       172 ~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~--~~~~~~~~vy~s~~~~W~~~~~~~-~~~~~~~~~~v~~~g~iy~l~~~  248 (405)
                      .+  .+...+.     +|+++|+....+..  ......+++||.++++|...+... ++..+..+..+.++|++|++++.
T Consensus       130 ~~--~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~  202 (341)
T PLN02153        130 FH--SMASDEN-----HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF  202 (341)
T ss_pred             ee--EEEEECC-----EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence            11  2222222     78999875422110  011246899999999999865311 12334455677889999999864


Q ss_pred             cC-----CCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcccccc-----c-cCccceEEE
Q 015502          249 TG-----GGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQD-----R-PDIIKGIGI  317 (405)
Q Consensus       249 ~~-----~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~-----~-~~~~~~~~v  317 (405)
                      .+     .........+.+||+.+++|+.+..  ...+|..+....+++.+++||++++.....     . ......+.+
T Consensus       203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~--~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~  280 (341)
T PLN02153        203 ATSILPGGKSDYESNAVQFFDPASGKWTEVET--TGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYA  280 (341)
T ss_pred             ccccccCCccceecCceEEEEcCCCcEEeccc--cCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEE
Confidence            21     0011123579999999999986421  123455555556788899999999853210     0 001224555


Q ss_pred             EEEeCceeEEEec
Q 015502          318 WVLNGKEWQEVAR  330 (405)
Q Consensus       318 w~l~~~~W~~v~~  330 (405)
                      ++++.++|+.+..
T Consensus       281 ~d~~~~~W~~~~~  293 (341)
T PLN02153        281 LDTETLVWEKLGE  293 (341)
T ss_pred             EEcCccEEEeccC
Confidence            5555789998863

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.51  E-value=1e-12  Score=121.84  Aligned_cols=222  Identities=13%  Similarity=0.050  Sum_probs=136.6

Q ss_pred             eeeeccCCCCCCCCeEEEecCceEEEEeCCC----CceEEEEeCcccce----eeccCCCCCCCCccceeEEEEeCCCCc
Q 015502          115 KWYGIELPCIETSNWFIASSYGLVCFMDNDS----RSELYVCNPISKSW----KKLEEPPGLKFSDYSALSLSVDRVSHR  186 (405)
Q Consensus       115 ~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~----~~lP~~~~~~~~~~~~~~~~~~~~~~~  186 (405)
                      +|..+.....++.....++.++.|++.++..    ...++.+|+.+++|    ..+|++|..+.. +.  +...+.    
T Consensus        52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~--~~~~~~----  124 (323)
T TIGR03548        52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN-GS--ACYKDG----  124 (323)
T ss_pred             eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC-ce--EEEECC----
Confidence            6877653233333344555677777776532    25789999999987    778888755422 22  222222    


Q ss_pred             EEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECC
Q 015502          187 YTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLS  266 (405)
Q Consensus       187 ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~  266 (405)
                       +|+++|+... ..   ....+++||..+++|.... +++...+..+..+.++++||++++..+    .....+.+||+.
T Consensus       125 -~iYv~GG~~~-~~---~~~~v~~yd~~~~~W~~~~-~~p~~~r~~~~~~~~~~~iYv~GG~~~----~~~~~~~~yd~~  194 (323)
T TIGR03548       125 -TLYVGGGNRN-GK---PSNKSYLFNLETQEWFELP-DFPGEPRVQPVCVKLQNELYVFGGGSN----IAYTDGYKYSPK  194 (323)
T ss_pred             -EEEEEeCcCC-Cc---cCceEEEEcCCCCCeeECC-CCCCCCCCcceEEEECCEEEEEcCCCC----ccccceEEEecC
Confidence             7999887421 11   1357899999999999864 333223445556788999999986431    122357899999


Q ss_pred             CCcchhhhcccccccCCcc-ccCceEEeCCcEEEEEccccccc-----------------------------cCccceEE
Q 015502          267 SRSSHALLIKSFIPVPCAL-TCGRLMNLKEKLVMVGGIGKQDR-----------------------------PDIIKGIG  316 (405)
Q Consensus       267 ~~~w~~~~~~~~~~~p~~~-~~~~l~~~~G~L~~v~~~~~~~~-----------------------------~~~~~~~~  316 (405)
                      +++|+.+......+.|... ....++..+|+||++++......                             ......++
T Consensus       195 ~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  274 (323)
T TIGR03548       195 KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKIL  274 (323)
T ss_pred             CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEE
Confidence            9999854211111223222 22334556799999998642100                             00124689


Q ss_pred             EEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC
Q 015502          317 IWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY  360 (405)
Q Consensus       317 vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  360 (405)
                      +|++..++|+.+..+|....       ...++...++.||+...
T Consensus       275 ~yd~~~~~W~~~~~~p~~~r-------~~~~~~~~~~~iyv~GG  311 (323)
T TIGR03548       275 IYNVRTGKWKSIGNSPFFAR-------CGAALLLTGNNIFSING  311 (323)
T ss_pred             EEECCCCeeeEccccccccc-------CchheEEECCEEEEEec
Confidence            99999999999987763211       11233446778888764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=99.51  E-value=3.2e-12  Score=124.00  Aligned_cols=210  Identities=12%  Similarity=0.137  Sum_probs=136.5

Q ss_pred             eeEEecCCCCeeeeccCCC-CCC---CCeEEEecCceEEEEeCCC----CceEEEEeCcccceeeccCC---CCCCCCcc
Q 015502          105 IGYAYDPILRKWYGIELPC-IET---SNWFIASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEP---PGLKFSDY  173 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~-~~~---~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~---~~~~~~~~  173 (405)
                      ..+.||+.+++|..++... .+.   ..+..++.++.|++.++..    .+.++++||.|++|..++++   |.++.   
T Consensus       194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~---  270 (470)
T PLN02193        194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS---  270 (470)
T ss_pred             cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc---
Confidence            3678999999999765321 222   2334566788888877632    25799999999999999876   33331   


Q ss_pred             ceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc-ccccccCCCccEEECcEEEeeEEecCCC
Q 015502          174 SALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE-VLTGWRAGDESIICDGVLYFLIYATGGG  252 (405)
Q Consensus       174 ~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~-~~~~~~~~~~~v~~~g~iy~l~~~~~~~  252 (405)
                      ...+...+     -+||++|+.....    ....+++||..+++|+....+ .++..+..+..++++|++|++++..+  
T Consensus       271 ~h~~~~~~-----~~iYv~GG~~~~~----~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g--  339 (470)
T PLN02193        271 FHSMAADE-----ENVYVFGGVSATA----RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG--  339 (470)
T ss_pred             ceEEEEEC-----CEEEEECCCCCCC----CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC--
Confidence            11222222     2789988753211    134689999999999886532 12233455667788999999986432  


Q ss_pred             CCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcccccccc------CccceEEEEEEeCceeE
Q 015502          253 APENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRP------DIIKGIGIWVLNGKEWQ  326 (405)
Q Consensus       253 ~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~------~~~~~~~vw~l~~~~W~  326 (405)
                        .....+.+||+.+++|+.+..  ....|..+....++..+++||++++.......      .....+.+|+++..+|+
T Consensus       340 --~~~~dv~~yD~~t~~W~~~~~--~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        340 --CEVDDVHYYDPVQDKWTQVET--FGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             --CccCceEEEECCCCEEEEecc--CCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence              124679999999999986421  11335445555678889999999986421100      01223555555578999


Q ss_pred             EEeccC
Q 015502          327 EVARMP  332 (405)
Q Consensus       327 ~v~~i~  332 (405)
                      .+..++
T Consensus       416 ~~~~~~  421 (470)
T PLN02193        416 RLDKFG  421 (470)
T ss_pred             EcccCC
Confidence            987665

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.14  E-value=3e-09  Score=90.23  Aligned_cols=231  Identities=15%  Similarity=0.202  Sum_probs=143.1

Q ss_pred             eEEecCCCCeeeeccCC-----------CCCCC--CeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccC---
Q 015502          106 GYAYDPILRKWYGIELP-----------CIETS--NWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEE---  164 (405)
Q Consensus       106 ~~~~d~~~~~w~~~~~p-----------~~~~~--~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~---  164 (405)
                      ...++...-+|..++.-           ..|..  -+.+..-.+-+++.++.+     .+.++-+||-|.+|...--   
T Consensus        46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~  125 (392)
T KOG4693|consen   46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGF  125 (392)
T ss_pred             eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeee
Confidence            34455556688877531           11111  123445566677766533     3578999999999987532   


Q ss_pred             CCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccc-cccccccCCCccEEECcEEE
Q 015502          165 PPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWK-EVLTGWRAGDESIICDGVLY  243 (405)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~~~~~~~~~~v~~~g~iy  243 (405)
                      .|..+ -.++++.++-       ..+++|+.....+..  -..++++|..+-.|+.+.. ..|++++..+.++++++.+|
T Consensus       126 vPgaR-DGHsAcV~gn-------~MyiFGGye~~a~~F--S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MY  195 (392)
T KOG4693|consen  126 VPGAR-DGHSACVWGN-------QMYIFGGYEEDAQRF--SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMY  195 (392)
T ss_pred             cCCcc-CCceeeEECc-------EEEEecChHHHHHhh--hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEE
Confidence            12222 2245555553       456666643221111  2468899999999999863 56788899999999999999


Q ss_pred             eeEEecCC----CCC--CCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEE
Q 015502          244 FLIYATGG----GAP--ENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGI  317 (405)
Q Consensus       244 ~l~~~~~~----~~~--~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~v  317 (405)
                      ++++..+.    ...  ..-..|+++|+.|+.|...  +.....|..+-.....+.+|++|++++......   ...-++
T Consensus       196 iFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~--p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln---~HfndL  270 (392)
T KOG4693|consen  196 IFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT--PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN---VHFNDL  270 (392)
T ss_pred             EeccccccCCCccchhhhhcceeEEEeccccccccC--CCCCcCCCcccccceEEEcceEEEecccchhhh---hhhcce
Confidence            99976542    111  1124799999999999742  112233444444567899999999998753321   234567


Q ss_pred             EEEeC--ceeEEEecc---ChhHHhccCCCCceeEEeeCCCEEEEEe
Q 015502          318 WVLNG--KEWQEVARM---PHKFFQGFGEFDDVFASSGTDDLIYIQS  359 (405)
Q Consensus       318 w~l~~--~~W~~v~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~  359 (405)
                      |.++.  ..|.++..-   |....        -.+++..|+.||+-.
T Consensus       271 y~FdP~t~~W~~I~~~Gk~P~aRR--------RqC~~v~g~kv~LFG  309 (392)
T KOG4693|consen  271 YCFDPKTSMWSVISVRGKYPSARR--------RQCSVVSGGKVYLFG  309 (392)
T ss_pred             eecccccchheeeeccCCCCCccc--------ceeEEEECCEEEEec
Confidence            77774  679987543   22211        123455677777753

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.07  E-value=2.7e-09  Score=84.66  Aligned_cols=109  Identities=24%  Similarity=0.447  Sum_probs=76.2

Q ss_pred             cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccC----CccccCceEEeCCcEEEEEccccccccC
Q 015502          235 SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVP----CALTCGRLMNLKEKLVMVGGIGKQDRPD  310 (405)
Q Consensus       235 ~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p----~~~~~~~l~~~~G~L~~v~~~~~~~~~~  310 (405)
                      ++++||.+||++...    ......|++||+++|+|+      .++.|    .......|++++|+|+++......    
T Consensus         1 gicinGvly~~a~~~----~~~~~~IvsFDv~~E~f~------~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~----   66 (129)
T PF08268_consen    1 GICINGVLYWLAWSE----DSDNNVIVSFDVRSEKFR------FIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQG----   66 (129)
T ss_pred             CEEECcEEEeEEEEC----CCCCcEEEEEEcCCceEE------EEEeeeeeccccCccEEEEeCCeEEEEEecCCC----
Confidence            478999999999762    234578999999999997      45665    223456799999999999764321    


Q ss_pred             ccceEEEEEEeC---ceeEEEec-cChhHHhcc-CCCCceeEEeeCCCEEEE
Q 015502          311 IIKGIGIWVLNG---KEWQEVAR-MPHKFFQGF-GEFDDVFASSGTDDLIYI  357 (405)
Q Consensus       311 ~~~~~~vw~l~~---~~W~~v~~-i~~~~~~~~-~~~~~~~~~~~~~~~i~~  357 (405)
                      ....+++|.|++   ++|++... +|....... +....++++...|++|++
T Consensus        67 ~~~~~~iWvLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   67 EPDSIDIWVLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             CcceEEEEEeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence            135699999995   68999866 554332211 112345666777888888

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.98  E-value=1.8e-08  Score=85.67  Aligned_cols=217  Identities=12%  Similarity=0.129  Sum_probs=138.1

Q ss_pred             ceEEEEeCcccceeeccCCCC------C----CCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCC
Q 015502          147 SELYVCNPISKSWKKLEEPPG------L----KFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTM  216 (405)
Q Consensus       147 ~~~~v~NP~T~~~~~lP~~~~------~----~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~  216 (405)
                      -.+.++|..+-.|..+|+--.      .    ....+......++.     ++++-|+.+..-+.   -..++-||++++
T Consensus        44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-----~~yvWGGRND~ega---CN~Ly~fDp~t~  115 (392)
T KOG4693|consen   44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-----KAYVWGGRNDDEGA---CNLLYEFDPETN  115 (392)
T ss_pred             ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-----eEEEEcCccCcccc---cceeeeeccccc
Confidence            478999999999999987211      0    11122233344433     78887775432221   235778999999


Q ss_pred             Ccccccc-cccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCC
Q 015502          217 MWVTSWK-EVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKE  295 (405)
Q Consensus       217 ~W~~~~~-~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G  295 (405)
                      .|...+. ...++.+.++++++.++.+|++++... +.......+.++|+.|.+|..+-+  ....|.-+.....++.+|
T Consensus       116 ~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~-~a~~FS~d~h~ld~~TmtWr~~~T--kg~PprwRDFH~a~~~~~  192 (392)
T KOG4693|consen  116 VWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEE-DAQRFSQDTHVLDFATMTWREMHT--KGDPPRWRDFHTASVIDG  192 (392)
T ss_pred             cccccceeeecCCccCCceeeEECcEEEEecChHH-HHHhhhccceeEeccceeeeehhc--cCCCchhhhhhhhhhccc
Confidence            9988652 345566788899999999999996642 233444679999999999986422  233344344455677889


Q ss_pred             cEEEEEcccccccc------CccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC-------CC
Q 015502          296 KLVMVGGIGKQDRP------DIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-------GA  362 (405)
Q Consensus       296 ~L~~v~~~~~~~~~------~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~  362 (405)
                      ..|++++.......      .-..++...++..+.|..-..-+.  .. -|..+.  ...+.++.+|+-..       --
T Consensus       193 ~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~--~P-~GRRSH--S~fvYng~~Y~FGGYng~ln~Hf  267 (392)
T KOG4693|consen  193 MMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM--KP-GGRRSH--STFVYNGKMYMFGGYNGTLNVHF  267 (392)
T ss_pred             eEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc--CC-Cccccc--ceEEEcceEEEecccchhhhhhh
Confidence            99999987433211      123568888888899987522111  10 000111  11234667776432       12


Q ss_pred             CeEEEEECCCCcEEEcc
Q 015502          363 PSLLVYDMNLKQWRWSH  379 (405)
Q Consensus       363 ~~~~~Yd~~~~~w~~l~  379 (405)
                      ..+..||+++..|+.+.
T Consensus       268 ndLy~FdP~t~~W~~I~  284 (392)
T KOG4693|consen  268 NDLYCFDPKTSMWSVIS  284 (392)
T ss_pred             cceeecccccchheeee
Confidence            48999999999999986

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.94  E-value=9.3e-10  Score=70.25  Aligned_cols=42  Identities=33%  Similarity=0.661  Sum_probs=36.0

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhh
Q 015502           42 DLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW   83 (405)
Q Consensus        42 ~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~   83 (405)
                      |..||+|++.+||+.|+.+|+.+++.|||+|+.++.++.+.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~   42 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR   42 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence            458999999999999999999999999999999998875443

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.90  E-value=4.3e-08  Score=88.31  Aligned_cols=219  Identities=15%  Similarity=0.167  Sum_probs=137.9

Q ss_pred             ceEEEEeCcccceeeccCC--CCCCCCccceeEEEEeCCCCcEEEEEEee-eccCCCcc-ccceEEEEEeCCCCCccccc
Q 015502          147 SELYVCNPISKSWKKLEEP--PGLKFSDYSALSLSVDRVSHRYTVSIVKS-KQVTGNFF-QWELSIHIYDSDTMMWVTSW  222 (405)
Q Consensus       147 ~~~~v~NP~T~~~~~lP~~--~~~~~~~~~~~~~~~~~~~~~ykv~~~~~-~~~~~~~~-~~~~~~~vy~s~~~~W~~~~  222 (405)
                      +.+|+||-.+++|+.+-.+  |.++ ..+.   +++.++.   .++++|+ ...++... ......++|+..+++|..+.
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pR-sshq---~va~~s~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~  170 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPR-SSHQ---AVAVPSN---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE  170 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCC-ccce---eEEeccC---eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence            6789999999999987433  3223 2222   2222322   3455544 33333211 11345889999999999987


Q ss_pred             ccccccccCCCccEEECcEEEeeEEecCC-CCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEe-CCcEEEE
Q 015502          223 KEVLTGWRAGDESIICDGVLYFLIYATGG-GAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL-KEKLVMV  300 (405)
Q Consensus       223 ~~~~~~~~~~~~~v~~~g~iy~l~~~~~~-~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G~L~~v  300 (405)
                      .+--++.+.+|+.|.....|+.+|+..+- ......+.+.+||+.+=+|+.+.+.  ...|..+..+++.+. +|.|++.
T Consensus       171 ~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps--ga~PtpRSGcq~~vtpqg~i~vy  248 (521)
T KOG1230|consen  171 FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS--GAGPTPRSGCQFSVTPQGGIVVY  248 (521)
T ss_pred             cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC--CCCCCCCCcceEEecCCCcEEEE
Confidence            54445667788889888899998866432 1222345799999999999987552  225666777777777 9999999


Q ss_pred             Eccccccc----cCccceEEEEEEeC-------ceeEEEeccCh--hHHhccCCCCceeEEeeCCCEEEEEeC-------
Q 015502          301 GGIGKQDR----PDIIKGIGIWVLNG-------KEWQEVARMPH--KFFQGFGEFDDVFASSGTDDLIYIQSY-------  360 (405)
Q Consensus       301 ~~~~~~~~----~~~~~~~~vw~l~~-------~~W~~v~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~-------  360 (405)
                      +++.....    ...+.+-++|.|+.       ..|+++-....  .-..+|     .+++...+..++|-.-       
T Consensus       249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf-----sv~va~n~kal~FGGV~D~eeee  323 (521)
T KOG1230|consen  249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF-----SVAVAKNHKALFFGGVCDLEEEE  323 (521)
T ss_pred             cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce-----eEEEecCCceEEecceecccccc
Confidence            98743321    12356788999983       36888755432  111111     1233334455555220       


Q ss_pred             ------CCCeEEEEECCCCcEEEcc
Q 015502          361 ------GAPSLLVYDMNLKQWRWSH  379 (405)
Q Consensus       361 ------~~~~~~~Yd~~~~~w~~l~  379 (405)
                            --..++.||+..++|....
T Consensus       324 Esl~g~F~NDLy~fdlt~nrW~~~q  348 (521)
T KOG1230|consen  324 ESLSGEFFNDLYFFDLTRNRWSEGQ  348 (521)
T ss_pred             hhhhhhhhhhhhheecccchhhHhh
Confidence                  0137899999999998863

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=98.87  E-value=2.1e-07  Score=90.48  Aligned_cols=213  Identities=16%  Similarity=0.164  Sum_probs=135.9

Q ss_pred             eEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccc-ccc
Q 015502          148 ELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWK-EVL  226 (405)
Q Consensus       148 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~  226 (405)
                      +++++|--+..|.....-...............+     -+++++|+....   ......+++||..++.|+.... ..+
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-----~~l~lfGG~~~~---~~~~~~l~~~d~~t~~W~~l~~~~~~  160 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-----DKLYLFGGTDKK---YRNLNELHSLDLSTRTWSLLSPTGDP  160 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEEC-----CeEEEEccccCC---CCChhheEeccCCCCcEEEecCcCCC
Confidence            5999999999998876532111111222222222     178888875421   1124589999999999988753 223


Q ss_pred             ccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccc
Q 015502          227 TGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQ  306 (405)
Q Consensus       227 ~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~  306 (405)
                      +..+..+.++.++.++|+.|+....  ......+.+||+++.+|.++...  .+.|..+....+++.+++++++++....
T Consensus       161 P~~r~~Hs~~~~g~~l~vfGG~~~~--~~~~ndl~i~d~~~~~W~~~~~~--g~~P~pR~gH~~~~~~~~~~v~gG~~~~  236 (482)
T KOG0379|consen  161 PPPRAGHSATVVGTKLVVFGGIGGT--GDSLNDLHIYDLETSTWSELDTQ--GEAPSPRYGHAMVVVGNKLLVFGGGDDG  236 (482)
T ss_pred             CCCcccceEEEECCEEEEECCccCc--ccceeeeeeeccccccceecccC--CCCCCCCCCceEEEECCeEEEEeccccC
Confidence            4456678889999999999865421  22457899999999999976433  3455556667788999999999886522


Q ss_pred             cccCccceEEEEEEeCceeEEEecc---ChhHHhccCCCCceeEEeeCCCEEEEEeC-------CCCeEEEEECCCCcEE
Q 015502          307 DRPDIIKGIGIWVLNGKEWQEVARM---PHKFFQGFGEFDDVFASSGTDDLIYIQSY-------GAPSLLVYDMNLKQWR  376 (405)
Q Consensus       307 ~~~~~~~~~~vw~l~~~~W~~v~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~Yd~~~~~w~  376 (405)
                      .  .....+.+.+|...+|.++...   |....        .......++.+++...       ....++.||++++.|.
T Consensus       237 ~--~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~--------~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~  306 (482)
T KOG0379|consen  237 D--VYLNDVHILDLSTWEWKLLPTGGDLPSPRS--------GHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWS  306 (482)
T ss_pred             C--ceecceEeeecccceeeeccccCCCCCCcc--------eeeeEEECCEEEEEcCCccccccccccccccccccccee
Confidence            1  1233344444446788865432   22111        0111235666666532       2457889999999999


Q ss_pred             EccCCC
Q 015502          377 WSHKCP  382 (405)
Q Consensus       377 ~l~~~p  382 (405)
                      ++....
T Consensus       307 ~~~~~~  312 (482)
T KOG0379|consen  307 KVESVG  312 (482)
T ss_pred             eeeccc
Confidence            998665

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=98.77  E-value=7.2e-07  Score=86.76  Aligned_cols=212  Identities=14%  Similarity=0.118  Sum_probs=136.0

Q ss_pred             eEEecCCCCeeeeccCC---CCCCCCeEEEecCceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCCccceeE
Q 015502          106 GYAYDPILRKWYGIELP---CIETSNWFIASSYGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFSDYSALS  177 (405)
Q Consensus       106 ~~~~d~~~~~w~~~~~p---~~~~~~~~~~s~~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~  177 (405)
                      .+.+|..+..|.....-   +.+...+.+.+.+..|++.++..     ..++..+|+.|++|..+..............+
T Consensus        90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~  169 (482)
T KOG0379|consen   90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSA  169 (482)
T ss_pred             eEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceE
Confidence            56778887777654321   12333444555556666665532     14799999999999998754331111122223


Q ss_pred             EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccc-cccccccCCCccEEECcEEEeeEEecCCCCCCC
Q 015502          178 LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWK-EVLTGWRAGDESIICDGVLYFLIYATGGGAPEN  256 (405)
Q Consensus       178 ~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~  256 (405)
                      ..++.     +|+++|+.....+   ....+++||..+.+|..... ...+..+.++..+.++++++++++..  .....
T Consensus       170 ~~~g~-----~l~vfGG~~~~~~---~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~--~~~~~  239 (482)
T KOG0379|consen  170 TVVGT-----KLVVFGGIGGTGD---SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGD--DGDVY  239 (482)
T ss_pred             EEECC-----EEEEECCccCccc---ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccc--cCCce
Confidence            33322     7888887654332   35689999999999988763 22334577888899999999998643  12334


Q ss_pred             ccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEe--CceeEEEeccC
Q 015502          257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQEVARMP  332 (405)
Q Consensus       257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~~v~~i~  332 (405)
                      ...+..+|+.+.+|...  ......|..+....++..+.+++++++...+  . ...--++|.|+  +..|..+..+.
T Consensus       240 l~D~~~ldl~~~~W~~~--~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~--~-~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  240 LNDVHILDLSTWEWKLL--PTGGDLPSPRSGHSLTVSGDHLLLFGGGTDP--K-QEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             ecceEeeecccceeeec--cccCCCCCCcceeeeEEECCEEEEEcCCccc--c-cccccccccccccccceeeeeccc
Confidence            56799999999999733  2234556666666677788899999886432  0 00234555555  57899987766

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.74  E-value=1e-08  Score=63.42  Aligned_cols=39  Identities=41%  Similarity=0.830  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhh
Q 015502           45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW   83 (405)
Q Consensus        45 LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~   83 (405)
                      ||+|++.+|+.+|+..++.+++.|||+|+.++.++.|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999987653

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.68  E-value=1.9e-08  Score=64.55  Aligned_cols=43  Identities=35%  Similarity=0.660  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhhhh
Q 015502           43 LILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNF   85 (405)
Q Consensus        43 ~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~~~   85 (405)
                      ..||+|++.+||.+|+++++.+++.|||+|++++.++.+...+
T Consensus         4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            4799999999999999999999999999999999998876543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=98.66  E-value=8.9e-07  Score=73.34  Aligned_cols=131  Identities=13%  Similarity=0.209  Sum_probs=77.6

Q ss_pred             cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc----cCce-EEeCCcEEEEEcccccccc
Q 015502          235 SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT----CGRL-MNLKEKLVMVGGIGKQDRP  309 (405)
Q Consensus       235 ~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~----~~~l-~~~~G~L~~v~~~~~~~~~  309 (405)
                      +|++||.+||++.....   .....|++||+.+|+++.     .+++|....    ...| ++.+|+|+++....     
T Consensus         1 gV~vnG~~hW~~~~~~~---~~~~~IlsFDl~~E~F~~-----~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~-----   67 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENN---DEKDFILSFDLSTEKFGR-----SLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD-----   67 (164)
T ss_pred             CEEECCEEEeeEEecCC---CCceEEEEEeccccccCC-----EECCCCccCccCCEEEEEEecCCEEEEEEecc-----
Confidence            48899999999976421   111279999999999842     466676544    2335 34477999986421     


Q ss_pred             CccceEEEEEEeC-----ceeEEEeccChhHHhccCCC-CceeEEeeCCCEEEEE-eCC--C---CeEEEEECCCCcEEE
Q 015502          310 DIIKGIGIWVLNG-----KEWQEVARMPHKFFQGFGEF-DDVFASSGTDDLIYIQ-SYG--A---PSLLVYDMNLKQWRW  377 (405)
Q Consensus       310 ~~~~~~~vw~l~~-----~~W~~v~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~-~~~--~---~~~~~Yd~~~~~w~~  377 (405)
                       ....++||.+++     .+|++..+++......+... ...-.+...++.+.+. ...  .   ..+++|+ +++..++
T Consensus        68 -~~~~~~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~  145 (164)
T PF07734_consen   68 -ETSKIEIWVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIE  145 (164)
T ss_pred             -CCccEEEEEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEE
Confidence             134599999993     58999988874222211000 0011112233333333 211  1   4677887 7777777


Q ss_pred             ccC
Q 015502          378 SHK  380 (405)
Q Consensus       378 l~~  380 (405)
                      +..
T Consensus       146 ~~~  148 (164)
T PF07734_consen  146 VDI  148 (164)
T ss_pred             ccc
Confidence            753

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.60  E-value=4.9e-06  Score=75.34  Aligned_cols=150  Identities=15%  Similarity=0.221  Sum_probs=98.1

Q ss_pred             eEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE-CcEEEeeEEecCC-CC
Q 015502          176 LSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC-DGVLYFLIYATGG-GA  253 (405)
Q Consensus       176 ~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g~iy~l~~~~~~-~~  253 (405)
                      +.|.+.|.-.  .++.+|+.-..+.-..-...++.|+.+++.|+....|..+..+..+.+|++ .|.+|..|+.-.- ..
T Consensus        70 ~sl~~nPeke--ELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq  147 (521)
T KOG1230|consen   70 PSLFANPEKE--ELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQ  147 (521)
T ss_pred             cceeeccCcc--eeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcch
Confidence            3455555433  455555433332211113457899999999999876555555666777766 5888887753210 00


Q ss_pred             C--CCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccC-ccceEEEEEEeCceeEEEec
Q 015502          254 P--ENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPD-IIKGIGIWVLNGKEWQEVAR  330 (405)
Q Consensus       254 ~--~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~-~~~~~~vw~l~~~~W~~v~~  330 (405)
                      .  .....+..||+.+.+|+++.   ..-.|..+....++++..+|.+++++....+.. ....+.+|.|+...|.++..
T Consensus       148 ~qF~HYkD~W~fd~~trkweql~---~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep  224 (521)
T KOG1230|consen  148 EQFHHYKDLWLFDLKTRKWEQLE---FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP  224 (521)
T ss_pred             hhhhhhhheeeeeeccchheeec---cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence            1  11236899999999999752   334567777888999999999999975443321 24557888888999999865

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.06  E-value=0.00054  Score=60.93  Aligned_cols=38  Identities=34%  Similarity=0.686  Sum_probs=35.8

Q ss_pred             CCCC----HHHHHHHHhcCChhhhHHHhhcchhhHhhhcChh
Q 015502           43 LILP----DDLLERILAYLPIASIFRAGCVCRRWHEIVSSRR   80 (405)
Q Consensus        43 ~~LP----~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~   80 (405)
                      ..||    +++.+.||+.|...+|..+..|||+|+.+++++.
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~  117 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGM  117 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccch
Confidence            3689    9999999999999999999999999999999885

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.98  E-value=0.00061  Score=63.78  Aligned_cols=121  Identities=12%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             cCCCccEEE------CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcc
Q 015502          230 RAGDESIIC------DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGI  303 (405)
Q Consensus       230 ~~~~~~v~~------~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~  303 (405)
                      +..+.+|..      ..++|+.++-.|.    ....+..+|+++..|++....-+.++|..  -......++|+|+.+++
T Consensus       200 RESHTAViY~eKDs~~skmvvyGGM~G~----RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRS--LHsa~~IGnKMyvfGGW  273 (830)
T KOG4152|consen  200 RESHTAVIYTEKDSKKSKMVVYGGMSGC----RLGDLWTLDLDTLTWNKPSLSGVAPLPRS--LHSATTIGNKMYVFGGW  273 (830)
T ss_pred             cccceeEEEEeccCCcceEEEEcccccc----cccceeEEecceeecccccccCCCCCCcc--cccceeecceeEEecce
Confidence            445566655      3478888754432    23578999999999997655445566653  33456788999999987


Q ss_pred             ccc----------cccC-ccceEEEEEEeCceeEEEec--cChh-HHhccCCCCceeEEeeCCCEEEEEeC
Q 015502          304 GKQ----------DRPD-IIKGIGIWVLNGKEWQEVAR--MPHK-FFQGFGEFDDVFASSGTDDLIYIQSY  360 (405)
Q Consensus       304 ~~~----------~~~~-~~~~~~vw~l~~~~W~~v~~--i~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~  360 (405)
                      ...          +.++ .+..+..|.|++.+|+.+..  ..+. +-+.    ...-+..+.|..+||.+.
T Consensus       274 VPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~----RAGHCAvAigtRlYiWSG  340 (830)
T KOG4152|consen  274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRA----RAGHCAVAIGTRLYIWSG  340 (830)
T ss_pred             eeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccc----cccceeEEeccEEEEEec
Confidence            322          1111 25779999999999998642  2111 1010    011133556888888753

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.84  E-value=0.0012  Score=59.25  Aligned_cols=173  Identities=17%  Similarity=0.194  Sum_probs=102.6

Q ss_pred             ceEEEEeCc--ccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCC-ccccceEEEEEeCCCCCcccccc
Q 015502          147 SELYVCNPI--SKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGN-FFQWELSIHIYDSDTMMWVTSWK  223 (405)
Q Consensus       147 ~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~-~~~~~~~~~vy~s~~~~W~~~~~  223 (405)
                      ..+|+.|.-  .+.|+.+...|...+....+++++-       +++++++...... ..+-...++.|++.+++|.....
T Consensus        58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~-------kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t  130 (381)
T COG3055          58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGG-------KLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT  130 (381)
T ss_pred             ccceehhhhcCCCCceEcccCCCcccccchheeeCC-------eEEEeeccccCCCCCceEeeeeEEecCCCChhheecc
Confidence            445555544  4689999887755443333333322       7888776432221 12223568899999999998875


Q ss_pred             cccccccCCCccEEECc-EEEeeEEecCC--C-----------------------------CCCCccEEEEEECCCCcch
Q 015502          224 EVLTGWRAGDESIICDG-VLYFLIYATGG--G-----------------------------APENRHGLISFNLSSRSSH  271 (405)
Q Consensus       224 ~~~~~~~~~~~~v~~~g-~iy~l~~~~~~--~-----------------------------~~~~~~~i~~fD~~~~~w~  271 (405)
                      ..|.. ...+..+.+++ .+|+.++....  +                             +......+++||+.+++|+
T Consensus       131 ~sP~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~  209 (381)
T COG3055         131 RSPTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWR  209 (381)
T ss_pred             ccccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhh
Confidence            44444 34455566666 89998753210  0                             0111235899999999998


Q ss_pred             hhhcccccccCCccccCceEEe-CCcEEEEEccccccccCccceEEEEEEe--CceeEEEeccChh
Q 015502          272 ALLIKSFIPVPCALTCGRLMNL-KEKLVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQEVARMPHK  334 (405)
Q Consensus       272 ~~~~~~~~~~p~~~~~~~l~~~-~G~L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~~v~~i~~~  334 (405)
                      .     .-..|....++..++. +++|.+|.+.-.+--  .+..+....+.  ..+|.+...+|..
T Consensus       210 ~-----~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGL--Rt~~~k~~~~~~~~~~w~~l~~lp~~  268 (381)
T COG3055         210 N-----LGENPFYGNAGSAVVIKGNKLTLINGEIKPGL--RTAEVKQADFGGDNLKWLKLSDLPAP  268 (381)
T ss_pred             h-----cCcCcccCccCcceeecCCeEEEEcceecCCc--cccceeEEEeccCceeeeeccCCCCC
Confidence            4     2445654445544554 456999987533311  13333444443  4689999887753

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.014  Score=52.76  Aligned_cols=219  Identities=15%  Similarity=0.175  Sum_probs=121.5

Q ss_pred             eEEecCC--CCeeeecc-CCCCCCCCeEEEecCceEEEEeCCC---------CceEEEEeCcccceeeccCCCCCCCCcc
Q 015502          106 GYAYDPI--LRKWYGIE-LPCIETSNWFIASSYGLVCFMDNDS---------RSELYVCNPISKSWKKLEEPPGLKFSDY  173 (405)
Q Consensus       106 ~~~~d~~--~~~w~~~~-~p~~~~~~~~~~s~~Gll~~~~~~~---------~~~~~v~NP~T~~~~~lP~~~~~~~~~~  173 (405)
                      .+..|..  ...|.... .|..++.-.+.+.++|-|+.-++..         .+.+|.+||.+++|..|.... +.. ..
T Consensus        60 fy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~g-l~  137 (381)
T COG3055          60 FYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTG-LV  137 (381)
T ss_pred             ceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccc-cc
Confidence            3444543  34677764 4555555566777888888765421         146899999999999997531 111 11


Q ss_pred             ceeEEEEeCCCCcEEEEEEeeec------------------------------cCCCccccceEEEEEeCCCCCcccccc
Q 015502          174 SALSLSVDRVSHRYTVSIVKSKQ------------------------------VTGNFFQWELSIHIYDSDTMMWVTSWK  223 (405)
Q Consensus       174 ~~~~~~~~~~~~~ykv~~~~~~~------------------------------~~~~~~~~~~~~~vy~s~~~~W~~~~~  223 (405)
                      .+.....++    -+|++.++..                              .......+...+.+|++.++.|+....
T Consensus       138 G~~~~~~~~----~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~  213 (381)
T COG3055         138 GASTFSLNG----TKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE  213 (381)
T ss_pred             cceeEecCC----ceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc
Confidence            222333222    2566665432                              011122234568899999999999752


Q ss_pred             cccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc-----cCceEEeCCcEE
Q 015502          224 EVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT-----CGRLMNLKEKLV  298 (405)
Q Consensus       224 ~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~-----~~~l~~~~G~L~  298 (405)
                       .+....+....+.-++++-.+.+.-............-|.-...+|..+-   -.+.|....     ...-...+|.+.
T Consensus       214 -~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~l  289 (381)
T COG3055         214 -NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVL  289 (381)
T ss_pred             -CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEE
Confidence             22222333333333666777765432223333445666666788887531   122222111     112234667777


Q ss_pred             EEEccccc--------------cccCccceEEEEEEeCceeEEEeccChh
Q 015502          299 MVGGIGKQ--------------DRPDIIKGIGIWVLNGKEWQEVARMPHK  334 (405)
Q Consensus       299 ~v~~~~~~--------------~~~~~~~~~~vw~l~~~~W~~v~~i~~~  334 (405)
                      +.++-..+              .+..-.-+=+||.++++.|..+..||..
T Consensus       290 v~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~~  339 (381)
T COG3055         290 VAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQG  339 (381)
T ss_pred             EecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCCC
Confidence            77654221              1001122468899999999999999973

>PF13964 Kelch_6: Kelch motif

Probab=97.46  E-value=0.0004  Score=44.62  Aligned_cols=40  Identities=13%  Similarity=0.250  Sum_probs=31.8

Q ss_pred             eEEEecCceEEEEeCCCC-----ceEEEEeCcccceeeccCCCCC
Q 015502          129 WFIASSYGLVCFMDNDSR-----SELYVCNPISKSWKKLEEPPGL  168 (405)
Q Consensus       129 ~~~~s~~Gll~~~~~~~~-----~~~~v~NP~T~~~~~lP~~~~~  168 (405)
                      +-+++.+|-|++.++...     +.++++||.|++|..+|+||.+
T Consensus         5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence            345667788888776433     6899999999999999999854

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.26  E-value=0.00074  Score=42.69  Aligned_cols=44  Identities=16%  Similarity=0.403  Sum_probs=35.9

Q ss_pred             cCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015502          287 CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP  332 (405)
Q Consensus       287 ~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~  332 (405)
                      ...++..+++||+++|....  ......+++|+++++.|+++..||
T Consensus         4 ~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    4 GHAAVVVGNKIYVIGGYDGN--NQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             SEEEEEETTEEEEEEEBEST--SSBEEEEEEEETTTTEEEEEEEES
T ss_pred             cCEEEEECCEEEEEeeeccc--CceeeeEEEEeCCCCEEEEcCCCC
Confidence            34578899999999997652  335788999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00028  Score=62.06  Aligned_cols=39  Identities=26%  Similarity=0.446  Sum_probs=36.9

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChh
Q 015502           42 DLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRR   80 (405)
Q Consensus        42 ~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~   80 (405)
                      |-.||||+++.||+.|+.++|.++..|||+|+.+.++..
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~  136 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES  136 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence            779999999999999999999999999999999988765

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.17  E-value=0.17  Score=50.08  Aligned_cols=42  Identities=24%  Similarity=0.548  Sum_probs=37.6

Q ss_pred             cCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhh
Q 015502           41 VDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFL   82 (405)
Q Consensus        41 ~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~   82 (405)
                      ....||.++...||..|+.++++.++.||+.|+.++.+....
T Consensus       107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~  148 (537)
T KOG0274|consen  107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW  148 (537)
T ss_pred             hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence            345799999999999999999999999999999999876544

>PF13964 Kelch_6: Kelch motif

Probab=97.03  E-value=0.0013  Score=42.20  Aligned_cols=45  Identities=13%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             cCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccCh
Q 015502          287 CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPH  333 (405)
Q Consensus       287 ~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~  333 (405)
                      ...++..+|+||+++|....  ......+.+|++++++|+++..||.
T Consensus         4 ~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    4 GHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             cCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCC
Confidence            44678999999999997542  2246778999999999999998874

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.88  E-value=0.0019  Score=40.73  Aligned_cols=40  Identities=8%  Similarity=0.238  Sum_probs=32.0

Q ss_pred             CCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchh
Q 015502          231 AGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHA  272 (405)
Q Consensus       231 ~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~  272 (405)
                      ..+..+.++++||++|+..+  .......+..||+.+++|..
T Consensus         3 ~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~W~~   42 (47)
T PF01344_consen    3 SGHAAVVVGNKIYVIGGYDG--NNQPTNSVEVYDPETNTWEE   42 (47)
T ss_dssp             BSEEEEEETTEEEEEEEBES--TSSBEEEEEEEETTTTEEEE
T ss_pred             ccCEEEEECCEEEEEeeecc--cCceeeeEEEEeCCCCEEEE
Confidence            34567889999999998753  24556789999999999984

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.78  E-value=0.0011  Score=58.50  Aligned_cols=81  Identities=17%  Similarity=0.137  Sum_probs=51.5

Q ss_pred             cceeeecchhhhcccccccccccCCcCCCcc-ccccccCCCCCHHHHHHHHhcCC-----hhhhHHHhhcchhhHhhhcC
Q 015502            5 TSWINHCIDDMARGINEFDSFLELSDEGNKE-ASTLSVDLILPDDLLERILAYLP-----IASIFRAGCVCRRWHEIVSS   78 (405)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LP~dll~~Il~~Lp-----~~~l~r~r~VcK~W~~~i~~   78 (405)
                      .+|.++-.|+..++..-+-..+....+-.-. .++....+.||+|+|.+||.++=     ..+|.++.+|||.|+..+++
T Consensus        69 ~~~l~l~~D~~~~~~~~s~f~~tLt~qe~v~~qp~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~  148 (366)
T KOG2997|consen   69 NSYLELNDDASKMADLLSYFQQTLTFQESVLCQPELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARD  148 (366)
T ss_pred             cchhhccccchhhcCchhccccccccccccccchhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcC
Confidence            4677777776655554111111111111111 12211224799999999998763     59999999999999999999


Q ss_pred             hhhhhhh
Q 015502           79 RRFLWNF   85 (405)
Q Consensus        79 ~~F~~~~   85 (405)
                      |.|.+..
T Consensus       149 ~~lwR~a  155 (366)
T KOG2997|consen  149 PELWRLA  155 (366)
T ss_pred             hHHHHHH
Confidence            9876554

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.75  E-value=0.0037  Score=39.87  Aligned_cols=45  Identities=18%  Similarity=0.378  Sum_probs=31.4

Q ss_pred             CceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015502          288 GRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP  332 (405)
Q Consensus       288 ~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~  332 (405)
                      ...++.+++||++++............+.+|++++.+|+++..+|
T Consensus         5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            346789999999999721222223455777777789999988764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.55  E-value=0.0052  Score=39.18  Aligned_cols=42  Identities=12%  Similarity=0.218  Sum_probs=32.0

Q ss_pred             CCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchh
Q 015502          231 AGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHA  272 (405)
Q Consensus       231 ~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~  272 (405)
                      ..+.+++++++||++++............+..||+++.+|+.
T Consensus         3 ~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~   44 (49)
T PF07646_consen    3 YGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTE   44 (49)
T ss_pred             cceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEee
Confidence            456788999999999976111234455789999999999984

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.45  E-value=0.023  Score=53.57  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=89.4

Q ss_pred             EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccc-cccccccCCCccEEECcEEEeeEEecCC--C----
Q 015502          180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWK-EVLTGWRAGDESIICDGVLYFLIYATGG--G----  252 (405)
Q Consensus       180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~~~~~~~~~~v~~~g~iy~l~~~~~~--~----  252 (405)
                      +..+++.-|+++.|++....     .-.++..|.++-.|..... ...+-.+..+.++.+++++|++++-...  .    
T Consensus       209 ~eKDs~~skmvvyGGM~G~R-----LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~  283 (830)
T KOG4152|consen  209 TEKDSKKSKMVVYGGMSGCR-----LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKV  283 (830)
T ss_pred             EeccCCcceEEEEccccccc-----ccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeecccccc
Confidence            34556677889988764221     2256778899999988753 2223335567889999999999853211  0    


Q ss_pred             ---CCCC--ccEEEEEECCCCcchhhhcccc--cccCCccccCceEEeCCcEEEEEccccccc--cCccceEEEEEEeC
Q 015502          253 ---APEN--RHGLISFNLSSRSSHALLIKSF--IPVPCALTCGRLMNLKEKLVMVGGIGKQDR--PDIIKGIGIWVLNG  322 (405)
Q Consensus       253 ---~~~~--~~~i~~fD~~~~~w~~~~~~~~--~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~--~~~~~~~~vw~l~~  322 (405)
                         ..+.  ...+-++|+.+..|..+.....  -..|..+.....+..+.+||+-++.++...  .....+-++|-||.
T Consensus       284 ~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT  362 (830)
T KOG4152|consen  284 ATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT  362 (830)
T ss_pred             ccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence               1111  2358999999999986533221  123555556678889999999988755432  22356678888884

>smart00612 Kelch Kelch domain

Probab=95.34  E-value=0.036  Score=34.49  Aligned_cols=47  Identities=21%  Similarity=0.331  Sum_probs=28.9

Q ss_pred             EEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECc
Q 015502          188 TVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDG  240 (405)
Q Consensus       188 kv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g  240 (405)
                      +|+++|+...  .  .....+++||+++++|+... + ++..+..+..+.++|
T Consensus         1 ~iyv~GG~~~--~--~~~~~v~~yd~~~~~W~~~~-~-~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDG--G--QRLKSVEVYDPETNKWTPLP-S-MPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCC--C--ceeeeEEEECCCCCeEccCC-C-CCCccccceEEEeCC
Confidence            3677777531  1  11457899999999999864 3 333344444555543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.33  E-value=0.68  Score=40.89  Aligned_cols=166  Identities=14%  Similarity=0.149  Sum_probs=89.7

Q ss_pred             ceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc
Q 015502          205 ELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA  284 (405)
Q Consensus       205 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~  284 (405)
                      ...+..|+..+++=... .+++.. ..+...+.+++++|-|....        ...+.||..+-+  .     .-..+..
T Consensus        67 ~S~l~~~d~~tg~~~~~-~~l~~~-~FgEGit~~~d~l~qLTWk~--------~~~f~yd~~tl~--~-----~~~~~y~  129 (264)
T PF05096_consen   67 QSSLRKVDLETGKVLQS-VPLPPR-YFGEGITILGDKLYQLTWKE--------GTGFVYDPNTLK--K-----IGTFPYP  129 (264)
T ss_dssp             EEEEEEEETTTSSEEEE-EE-TTT---EEEEEEETTEEEEEESSS--------SEEEEEETTTTE--E-----EEEEE-S
T ss_pred             cEEEEEEECCCCcEEEE-EECCcc-ccceeEEEECCEEEEEEecC--------CeEEEEccccce--E-----EEEEecC
Confidence            45889999988864332 233322 23345677899999999754        479999998654  1     1222333


Q ss_pred             cccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCe
Q 015502          285 LTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPS  364 (405)
Q Consensus       285 ~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  364 (405)
                      .....|..-+..|++-.+.         .  .++.++....+.+.++.-.. .+.. -..+--.--.++.||.+--....
T Consensus       130 ~EGWGLt~dg~~Li~SDGS---------~--~L~~~dP~~f~~~~~i~V~~-~g~p-v~~LNELE~i~G~IyANVW~td~  196 (264)
T PF05096_consen  130 GEGWGLTSDGKRLIMSDGS---------S--RLYFLDPETFKEVRTIQVTD-NGRP-VSNLNELEYINGKIYANVWQTDR  196 (264)
T ss_dssp             SS--EEEECSSCEEEE-SS---------S--EEEEE-TTT-SEEEEEE-EE-TTEE----EEEEEEETTEEEEEETTSSE
T ss_pred             CcceEEEcCCCEEEEECCc---------c--ceEEECCcccceEEEEEEEE-CCEE-CCCcEeEEEEcCEEEEEeCCCCe
Confidence            3556677666677776652         2  34455554444444432100 0000 00000111237789987766789


Q ss_pred             EEEEECCCCcEEEccCCC-------CC--CCCcccceeeeeecee
Q 015502          365 LLVYDMNLKQWRWSHKCP-------VT--KRFPLQLFTGFCFEPR  400 (405)
Q Consensus       365 ~~~Yd~~~~~w~~l~~~p-------~~--~~~~~~~~~~~~~~p~  400 (405)
                      ++..|+++++....-++-       ..  .....+.++|+||.|.
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~  241 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE  241 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence            999999999887742211       00  1112678999999875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=95.04  E-value=0.054  Score=34.34  Aligned_cols=32  Identities=22%  Similarity=0.464  Sum_probs=18.5

Q ss_pred             CCEEEEEeC------CCCeEEEEECCCCcEEEccCCCC
Q 015502          352 DDLIYIQSY------GAPSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       352 ~~~i~~~~~------~~~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      ++.||+...      ....+.+||+++++|++++++|.
T Consensus        12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen   12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred             CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence            456666432      13489999999999999987773

>smart00612 Kelch Kelch domain

Probab=94.95  E-value=0.071  Score=33.09  Aligned_cols=46  Identities=4%  Similarity=0.059  Sum_probs=29.1

Q ss_pred             EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeC
Q 015502          241 VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK  294 (405)
Q Consensus       241 ~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~  294 (405)
                      +||++++..   .......+.+||+.+++|+.     ..++|..+....++..+
T Consensus         1 ~iyv~GG~~---~~~~~~~v~~yd~~~~~W~~-----~~~~~~~r~~~~~~~~~   46 (47)
T smart00612        1 KIYVVGGFD---GGQRLKSVEVYDPETNKWTP-----LPSMPTPRSGHGVAVIN   46 (47)
T ss_pred             CEEEEeCCC---CCceeeeEEEECCCCCeEcc-----CCCCCCccccceEEEeC
Confidence            378887543   12334679999999999984     34556554444444444

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=94.91  E-value=0.73  Score=43.00  Aligned_cols=128  Identities=13%  Similarity=0.202  Sum_probs=74.3

Q ss_pred             ECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc---cccCceEEeCCcEEEEEccccccccCc--c
Q 015502          238 CDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA---LTCGRLMNLKEKLVMVGGIGKQDRPDI--I  312 (405)
Q Consensus       238 ~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~---~~~~~l~~~~G~L~~v~~~~~~~~~~~--~  312 (405)
                      .+.+|..+...         ...+.||.++..-        ..+|.-   ....-.+..+|+||++...........  .
T Consensus        75 ~gskIv~~d~~---------~~t~vyDt~t~av--------~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~  137 (342)
T PF07893_consen   75 HGSKIVAVDQS---------GRTLVYDTDTRAV--------ATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDF  137 (342)
T ss_pred             cCCeEEEEcCC---------CCeEEEECCCCeE--------eccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccc
Confidence            36777777532         3699999999883        233432   122334566889999987633211100  0


Q ss_pred             ceEEEEEEe--------C--ceeEEEeccChhHHhccCCCC--cee--EEeeCCCEEEEEeCC-CCeEEEEECCCCcEEE
Q 015502          313 KGIGIWVLN--------G--KEWQEVARMPHKFFQGFGEFD--DVF--ASSGTDDLIYIQSYG-APSLLVYDMNLKQWRW  377 (405)
Q Consensus       313 ~~~~vw~l~--------~--~~W~~v~~i~~~~~~~~~~~~--~~~--~~~~~~~~i~~~~~~-~~~~~~Yd~~~~~w~~  377 (405)
                      ..+++....        .  ..|..+..-|   +.......  .+.  ++. +|..||+.... ....++||.++.+|++
T Consensus       138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP~PP---f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~  213 (342)
T PF07893_consen  138 PCFEALVYRPPPDDPSPEESWSWRSLPPPP---FVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRK  213 (342)
T ss_pred             eeEEEeccccccccccCCCcceEEcCCCCC---ccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceee
Confidence            156666433        1  2676654422   22111000  033  344 68999996532 2379999999999999


Q ss_pred             ccC--CCCCCC
Q 015502          378 SHK--CPVTKR  386 (405)
Q Consensus       378 l~~--~p~~~~  386 (405)
                      +..  +|..+.
T Consensus       214 ~GdW~LPF~G~  224 (342)
T PF07893_consen  214 HGDWMLPFHGQ  224 (342)
T ss_pred             ccceecCcCCc
Confidence            975  665543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.80  E-value=2.5  Score=36.78  Aligned_cols=186  Identities=16%  Similarity=0.232  Sum_probs=98.9

Q ss_pred             cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015502          134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS  213 (405)
Q Consensus       134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s  213 (405)
                      .+|.++....  ...++.+|+.|++..---.++.....    .....+.     +|++...          ...+..+|.
T Consensus        35 ~~~~v~~~~~--~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~-----~v~v~~~----------~~~l~~~d~   93 (238)
T PF13360_consen   35 DGGRVYVASG--DGNLYALDAKTGKVLWRFDLPGPISG----APVVDGG-----RVYVGTS----------DGSLYALDA   93 (238)
T ss_dssp             ETTEEEEEET--TSEEEEEETTTSEEEEEEECSSCGGS----GEEEETT-----EEEEEET----------TSEEEEEET
T ss_pred             eCCEEEEEcC--CCEEEEEECCCCCEEEEeeccccccc----eeeeccc-----ccccccc----------eeeeEeccc
Confidence            6788887643  58899999999875432222211101    1121111     4444431          116677774


Q ss_pred             --CCCCccc-ccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCccc--
Q 015502          214 --DTMMWVT-SWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCALT--  286 (405)
Q Consensus       214 --~~~~W~~-~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~~--  286 (405)
                        +.-.|+. ................+.++.+|+....         ..+.++|+++.+  |+.    . ...|....  
T Consensus        94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~l~~~d~~tG~~~w~~----~-~~~~~~~~~~  159 (238)
T PF13360_consen   94 KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS---------GKLVALDPKTGKLLWKY----P-VGEPRGSSPI  159 (238)
T ss_dssp             TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC---------SEEEEEETTTTEEEEEE----E-SSTT-SS--E
T ss_pred             CCcceeeeeccccccccccccccCceEecCEEEEEecc---------CcEEEEecCCCcEEEEe----e-cCCCCCCcce
Confidence              4455873 2211111112222344457777776532         489999998765  431    1 23322111  


Q ss_pred             ------cCceEEeCCcEEEEEccccccccCccceEEEEEEeCce--eEEEeccChhHHhccCCCCceeE-EeeCCCEEEE
Q 015502          287 ------CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE--WQEVARMPHKFFQGFGEFDDVFA-SSGTDDLIYI  357 (405)
Q Consensus       287 ------~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~--W~~v~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~  357 (405)
                            ...++..+|.+|+....+        ..+.+ ++..++  |+. . +..           ... ....++.+|+
T Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~g--------~~~~~-d~~tg~~~w~~-~-~~~-----------~~~~~~~~~~~l~~  217 (238)
T PF13360_consen  160 SSFSDINGSPVISDGRVYVSSGDG--------RVVAV-DLATGEKLWSK-P-ISG-----------IYSLPSVDGGTLYV  217 (238)
T ss_dssp             EEETTEEEEEECCTTEEEEECCTS--------SEEEE-ETTTTEEEEEE-C-SS------------ECECEECCCTEEEE
T ss_pred             eeecccccceEEECCEEEEEcCCC--------eEEEE-ECCCCCEEEEe-c-CCC-----------ccCCceeeCCEEEE
Confidence                  123445567777766421        12444 666544  733 2 222           122 3557899999


Q ss_pred             EeCCCCeEEEEECCCCcEEE
Q 015502          358 QSYGAPSLLVYDMNLKQWRW  377 (405)
Q Consensus       358 ~~~~~~~~~~Yd~~~~~w~~  377 (405)
                      .. .+..++++|+++++-.+
T Consensus       218 ~~-~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  218 TS-SDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EE-TTTEEEEEETTTTEEEE
T ss_pred             Ee-CCCEEEEEECCCCCEEe
Confidence            87 57899999999996544

...

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=94.35  E-value=0.067  Score=50.53  Aligned_cols=171  Identities=13%  Similarity=0.096  Sum_probs=95.2

Q ss_pred             EEeCcccceeeccCCCCC------CCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc
Q 015502          151 VCNPISKSWKKLEEPPGL------KFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE  224 (405)
Q Consensus       151 v~NP~T~~~~~lP~~~~~------~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~  224 (405)
                      .=-|.+-+|..+|+-...      +......--|.+++.  .-.||..||-..    .+.....++|+.+.+.|..+...
T Consensus       233 ~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~--~~CiYLYGGWdG----~~~l~DFW~Y~v~e~~W~~iN~~  306 (723)
T KOG2437|consen  233 SQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ--TECVYLYGGWDG----TQDLADFWAYSVKENQWTCINRD  306 (723)
T ss_pred             hcccccccccccCchhhcccccccCccccCcceEEEeCC--CcEEEEecCccc----chhHHHHHhhcCCcceeEEeecC
Confidence            345777888887753210      101112233444442  224666665321    12234678999999999887532


Q ss_pred             -ccccccCCCccEEE--CcEEEeeEEecCC---CCCCCccEEEEEECCCCcchhhhccccc-ccCCccccCceEEeCCc-
Q 015502          225 -VLTGWRAGDESIIC--DGVLYFLIYATGG---GAPENRHGLISFNLSSRSSHALLIKSFI-PVPCALTCGRLMNLKEK-  296 (405)
Q Consensus       225 -~~~~~~~~~~~v~~--~g~iy~l~~~~~~---~~~~~~~~i~~fD~~~~~w~~~~~~~~~-~~p~~~~~~~l~~~~G~-  296 (405)
                       -.++.+..++.|..  ..++|.+|.+-+-   ..-..+..+..||..++.|.-+-..... --|......++++-+.+ 
T Consensus       307 t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~  386 (723)
T KOG2437|consen  307 TEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKH  386 (723)
T ss_pred             CCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcc
Confidence             13455555666665  3499999876432   1223456799999999999732110000 01222234566776666 


Q ss_pred             -EEEEEccccccccCccceEEEEEEeCceeEE
Q 015502          297 -LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQE  327 (405)
Q Consensus       297 -L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~  327 (405)
                       ||+.+|+.....+.....+-.|.++..-|+.
T Consensus       387 ~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~  418 (723)
T KOG2437|consen  387 MIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL  418 (723)
T ss_pred             eEEEecCeeccCCCccccceEEEecCCccHHH
Confidence             9999887433222334556667666666643

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=94.11  E-value=0.06  Score=50.82  Aligned_cols=159  Identities=14%  Similarity=0.252  Sum_probs=98.1

Q ss_pred             CCCcccccccc--------cccccCCCccEEECc--EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc
Q 015502          215 TMMWVTSWKEV--------LTGWRAGDESIICDG--VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA  284 (405)
Q Consensus       215 ~~~W~~~~~~~--------~~~~~~~~~~v~~~g--~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~  284 (405)
                      +..|..+....        -+..+.++..|...+  .+|..|+-.|   .+......+|+...+.|...-  +....|..
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG---~~~l~DFW~Y~v~e~~W~~iN--~~t~~PG~  312 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG---TQDLADFWAYSVKENQWTCIN--RDTEGPGA  312 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc---chhHHHHHhhcCCcceeEEee--cCCCCCcc
Confidence            67787764311        123455677777766  9999986543   333456889999999998432  22356777


Q ss_pred             cccCceEE--eCCcEEEEEccccccc-cCccceEEEEEEe--CceeEEEeccChhHHhccC-CCCceeEEeeCCCEEEEE
Q 015502          285 LTCGRLMN--LKEKLVMVGGIGKQDR-PDIIKGIGIWVLN--GKEWQEVARMPHKFFQGFG-EFDDVFASSGTDDLIYIQ  358 (405)
Q Consensus       285 ~~~~~l~~--~~G~L~~v~~~~~~~~-~~~~~~~~vw~l~--~~~W~~v~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~  358 (405)
                      +.+..+|.  +..|||+.+....... .....+-++|++|  +..|..+.-=.. .--+.+ ..+.-+++.++.+.||+.
T Consensus       313 RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~-~dGGP~~vfDHqM~Vd~~k~~iyVf  391 (723)
T KOG2437|consen  313 RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTA-ADGGPKLVFDHQMCVDSEKHMIYVF  391 (723)
T ss_pred             hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccc-ccCCcceeecceeeEecCcceEEEe
Confidence            77777774  4569999987632211 1224567888888  478987542111 000000 012334556666678886


Q ss_pred             eC--------CCCeEEEEECCCCcEEEcc
Q 015502          359 SY--------GAPSLLVYDMNLKQWRWSH  379 (405)
Q Consensus       359 ~~--------~~~~~~~Yd~~~~~w~~l~  379 (405)
                      ..        .-..+++||.....|+.+.
T Consensus       392 GGr~~~~~e~~f~GLYaf~~~~~~w~~l~  420 (723)
T KOG2437|consen  392 GGRILTCNEPQFSGLYAFNCQCQTWKLLR  420 (723)
T ss_pred             cCeeccCCCccccceEEEecCCccHHHHH
Confidence            43        1148999999999998864

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=94.10  E-value=0.06  Score=34.11  Aligned_cols=40  Identities=13%  Similarity=0.202  Sum_probs=25.1

Q ss_pred             CCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchh
Q 015502          231 AGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHA  272 (405)
Q Consensus       231 ~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~  272 (405)
                      ..+.++.+ ++.||++|+...  .......+..||+++++|++
T Consensus         3 ~~h~~~~~~~~~i~v~GG~~~--~~~~~~d~~~~d~~~~~W~~   43 (49)
T PF13418_consen    3 YGHSAVSIGDNSIYVFGGRDS--SGSPLNDLWIFDIETNTWTR   43 (49)
T ss_dssp             BS-EEEEE-TTEEEEE--EEE---TEE---EEEEETTTTEEEE
T ss_pred             ceEEEEEEeCCeEEEECCCCC--CCcccCCEEEEECCCCEEEE
Confidence            44567777 699999986642  11344579999999999985

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=94.06  E-value=5.2  Score=37.40  Aligned_cols=246  Identities=13%  Similarity=0.170  Sum_probs=122.8

Q ss_pred             eeEEecCCCCeeeeccC-CCCCCCCe-EEEecCceEEEEeCC--CCce--EEEEeCcccceeeccCCCCCCCCccceeEE
Q 015502          105 IGYAYDPILRKWYGIEL-PCIETSNW-FIASSYGLVCFMDND--SRSE--LYVCNPISKSWKKLEEPPGLKFSDYSALSL  178 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~-p~~~~~~~-~~~s~~Gll~~~~~~--~~~~--~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~  178 (405)
                      ..+.||...+++..+.. .......+ .+...+.+|+.....  ....  .+-+++.+++...+...+...   ...+.+
T Consensus        16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g---~~p~~i   92 (345)
T PF10282_consen   16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG---SSPCHI   92 (345)
T ss_dssp             EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS---SCEEEE
T ss_pred             EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC---CCcEEE
Confidence            45567777777765542 12222223 344456777776653  2334  345566666776665433111   122455


Q ss_pred             EEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC-ccccc-------c-cccccccCCC-ccEEE--CcEEEeeE
Q 015502          179 SVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM-WVTSW-------K-EVLTGWRAGD-ESIIC--DGVLYFLI  246 (405)
Q Consensus       179 ~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~-W~~~~-------~-~~~~~~~~~~-~~v~~--~g~iy~l~  246 (405)
                      ..++. +.|.+++ .+.         .-.+.+|+...+- =....       . +.+......+ ..+..  +|+..++.
T Consensus        93 ~~~~~-g~~l~va-ny~---------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   93 AVDPD-GRFLYVA-NYG---------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EECTT-SSEEEEE-ETT---------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             EEecC-CCEEEEE-Ecc---------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            56554 3443333 221         1156666655431 11110       0 0000000111 12333  45544444


Q ss_pred             EecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCccccCceEEe-CC-cEEEEEccccccccCccceEEEEEEe-
Q 015502          247 YATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCALTCGRLMNL-KE-KLVMVGGIGKQDRPDIIKGIGIWVLN-  321 (405)
Q Consensus       247 ~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~~~~~l~~~-~G-~L~~v~~~~~~~~~~~~~~~~vw~l~-  321 (405)
                      ..+       ...|..|+...+.  ...   ...+..|....-++++.. +| .+|++...        ...+.++.++ 
T Consensus       162 dlG-------~D~v~~~~~~~~~~~l~~---~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~--------s~~v~v~~~~~  223 (345)
T PF10282_consen  162 DLG-------ADRVYVYDIDDDTGKLTP---VDSIKVPPGSGPRHLAFSPDGKYAYVVNEL--------SNTVSVFDYDP  223 (345)
T ss_dssp             ETT-------TTEEEEEEE-TTS-TEEE---EEEEECSTTSSEEEEEE-TTSSEEEEEETT--------TTEEEEEEEET
T ss_pred             ecC-------CCEEEEEEEeCCCceEEE---eeccccccCCCCcEEEEcCCcCEEEEecCC--------CCcEEEEeecc
Confidence            322       2578888887655  332   112344544444456554 44 56666643        4669999999 


Q ss_pred             -CceeEEEecc---ChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEEC--CCCcEEEccCCCCC
Q 015502          322 -GKEWQEVARM---PHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDM--NLKQWRWSHKCPVT  384 (405)
Q Consensus       322 -~~~W~~v~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~--~~~~w~~l~~~p~~  384 (405)
                       +..++.+..+   |.. +..- ....-+.+..+|+.+|+.+.....+.+|++  ++++.+.+...+..
T Consensus       224 ~~g~~~~~~~~~~~~~~-~~~~-~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~  290 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEG-FTGE-NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG  290 (345)
T ss_dssp             TTTEEEEEEEEESCETT-SCSS-SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred             cCCceeEEEEeeecccc-cccc-CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence             4566665544   331 1100 011223456779999999888889999998  45688877665543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.61  E-value=1.7  Score=38.16  Aligned_cols=156  Identities=12%  Similarity=0.050  Sum_probs=82.1

Q ss_pred             EEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCC----CcchhhhcccccccC
Q 015502          207 SIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSS----RSSHALLIKSFIPVP  282 (405)
Q Consensus       207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~----~~w~~~~~~~~~~~p  282 (405)
                      .-.+||..+++++....  .....+....+.-||.+...++..+     ....+..|++.+    ..|.+.    .-.+-
T Consensus        47 ~s~~yD~~tn~~rpl~v--~td~FCSgg~~L~dG~ll~tGG~~~-----G~~~ir~~~p~~~~~~~~w~e~----~~~m~  115 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTV--QTDTFCSGGAFLPDGRLLQTGGDND-----GNKAIRIFTPCTSDGTCDWTES----PNDMQ  115 (243)
T ss_pred             EEEEEecCCCcEEeccC--CCCCcccCcCCCCCCCEEEeCCCCc-----cccceEEEecCCCCCCCCceEC----ccccc
Confidence            45689999999987642  2222222233444999998876532     234677888876    456421    11122


Q ss_pred             CccccCc-eEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeE-EeeCCCEEEEE
Q 015502          283 CALTCGR-LMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFA-SSGTDDLIYIQ  358 (405)
Q Consensus       283 ~~~~~~~-l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~~  358 (405)
                      ..+.-.. ...-+|+++++++...       ...+.|--..  .......-+. ............+. +...|+++++.
T Consensus       116 ~~RWYpT~~~L~DG~vlIvGG~~~-------~t~E~~P~~~~~~~~~~~~~l~-~~~~~~~~nlYP~~~llPdG~lFi~a  187 (243)
T PF07250_consen  116 SGRWYPTATTLPDGRVLIVGGSNN-------PTYEFWPPKGPGPGPVTLPFLS-QTSDTLPNNLYPFVHLLPDGNLFIFA  187 (243)
T ss_pred             CCCccccceECCCCCEEEEeCcCC-------CcccccCCccCCCCceeeecch-hhhccCccccCceEEEcCCCCEEEEE
Confidence            2233333 3345799999998642       2345443321  1111111111 00000111112333 34455554444


Q ss_pred             eCCCCeEEEEECCCCcE-EEccCCCCC
Q 015502          359 SYGAPSLLVYDMNLKQW-RWSHKCPVT  384 (405)
Q Consensus       359 ~~~~~~~~~Yd~~~~~w-~~l~~~p~~  384 (405)
                      .   ..-.+||..++++ +.+|.+|..
T Consensus       188 n---~~s~i~d~~~n~v~~~lP~lPg~  211 (243)
T PF07250_consen  188 N---RGSIIYDYKTNTVVRTLPDLPGG  211 (243)
T ss_pred             c---CCcEEEeCCCCeEEeeCCCCCCC
Confidence            3   3678899999987 788888854

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02772 guanylate kinase

Probab=93.58  E-value=0.38  Score=45.13  Aligned_cols=80  Identities=11%  Similarity=0.106  Sum_probs=52.9

Q ss_pred             CCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEe-CCcEEEEEcccccccc
Q 015502          231 AGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL-KEKLVMVGGIGKQDRP  309 (405)
Q Consensus       231 ~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~-~G~L~~v~~~~~~~~~  309 (405)
                      ..+.++.+++++|++|+..+  ....-..+.+||..+.+|......  ...|..+.....+.. +++|+++......   
T Consensus        26 ~~~tav~igdk~yv~GG~~d--~~~~~~~v~i~D~~t~~W~~P~V~--G~~P~~r~GhSa~v~~~~rilv~~~~~~~---   98 (398)
T PLN02772         26 NRETSVTIGDKTYVIGGNHE--GNTLSIGVQILDKITNNWVSPIVL--GTGPKPCKGYSAVVLNKDRILVIKKGSAP---   98 (398)
T ss_pred             CcceeEEECCEEEEEcccCC--CccccceEEEEECCCCcEeccccc--CCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence            34678999999999996432  111335899999999999854222  233444444445545 6899999865322   


Q ss_pred             CccceEEEEEEe
Q 015502          310 DIIKGIGIWVLN  321 (405)
Q Consensus       310 ~~~~~~~vw~l~  321 (405)
                          .=.+|-|+
T Consensus        99 ----~~~~w~l~  106 (398)
T PLN02772         99 ----DDSIWFLE  106 (398)
T ss_pred             ----ccceEEEE
Confidence                25688887

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.03  E-value=1.2  Score=39.13  Aligned_cols=154  Identities=14%  Similarity=0.129  Sum_probs=80.4

Q ss_pred             eEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCC----CCcccccc
Q 015502          148 ELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDT----MMWVTSWK  223 (405)
Q Consensus       148 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~----~~W~~~~~  223 (405)
                      .-.+|||.|++++.+.....   ..++.-++..|+     +++..|+... +     ...+.+|++.+    ..|.+...
T Consensus        47 ~s~~yD~~tn~~rpl~v~td---~FCSgg~~L~dG-----~ll~tGG~~~-G-----~~~ir~~~p~~~~~~~~w~e~~~  112 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTD---TFCSGGAFLPDG-----RLLQTGGDND-G-----NKAIRIFTPCTSDGTCDWTESPN  112 (243)
T ss_pred             EEEEEecCCCcEEeccCCCC---CcccCcCCCCCC-----CEEEeCCCCc-c-----ccceEEEecCCCCCCCCceECcc
Confidence            34689999999999875421   112222222233     6777776532 1     34677787644    67877643


Q ss_pred             cccccccCCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccc-----cCCccccCceEEeCCcE
Q 015502          224 EVLTGWRAGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIP-----VPCALTCGRLMNLKEKL  297 (405)
Q Consensus       224 ~~~~~~~~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~-----~p~~~~~~~l~~~~G~L  297 (405)
                      . +...+...+.+.+ ||.+.++++..        .....|-+....-.......++.     .+....-.-.+.-+|+|
T Consensus       113 ~-m~~~RWYpT~~~L~DG~vlIvGG~~--------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~l  183 (243)
T PF07250_consen  113 D-MQSGRWYPTATTLPDGRVLIVGGSN--------NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNL  183 (243)
T ss_pred             c-ccCCCccccceECCCCCEEEEeCcC--------CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCE
Confidence            3 3334444444444 99999998643        11222333311100000000010     11111111234558999


Q ss_pred             EEEEccccccccCccceEEEEEEeCcee-EEEeccChh
Q 015502          298 VMVGGIGKQDRPDIIKGIGIWVLNGKEW-QEVARMPHK  334 (405)
Q Consensus       298 ~~v~~~~~~~~~~~~~~~~vw~l~~~~W-~~v~~i~~~  334 (405)
                      ++....          .-.+|+.+.+++ ..+..||..
T Consensus       184 Fi~an~----------~s~i~d~~~n~v~~~lP~lPg~  211 (243)
T PF07250_consen  184 FIFANR----------GSIIYDYKTNTVVRTLPDLPGG  211 (243)
T ss_pred             EEEEcC----------CcEEEeCCCCeEEeeCCCCCCC
Confidence            988753          267787777765 556677753

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.58  E-value=0.089  Score=48.90  Aligned_cols=43  Identities=23%  Similarity=0.465  Sum_probs=37.9

Q ss_pred             cccccCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChh
Q 015502           37 STLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRR   80 (405)
Q Consensus        37 ~~~~~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~   80 (405)
                      .....| .||.+++..|++.|..+++.|++.+|+.|+..+.+..
T Consensus        68 ~~~~~~-~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~  110 (483)
T KOG4341|consen   68 NNSISR-SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS  110 (483)
T ss_pred             cccccc-cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence            334446 8999999999999999999999999999999998763

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=92.52  E-value=10  Score=36.20  Aligned_cols=180  Identities=11%  Similarity=0.062  Sum_probs=94.1

Q ss_pred             cCceEEEEeCCCCceEEEEeCcccc--eee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEE
Q 015502          134 SYGLVCFMDNDSRSELYVCNPISKS--WKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHI  210 (405)
Q Consensus       134 ~~Gll~~~~~~~~~~~~v~NP~T~~--~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~v  210 (405)
                      .+|.|++...  ...++.+|+.|++  |+. ++...      ...-.+ .+.     +|++..+          .-.+..
T Consensus       119 ~~~~v~v~~~--~g~l~ald~~tG~~~W~~~~~~~~------~ssP~v-~~~-----~v~v~~~----------~g~l~a  174 (394)
T PRK11138        119 AGGKVYIGSE--KGQVYALNAEDGEVAWQTKVAGEA------LSRPVV-SDG-----LVLVHTS----------NGMLQA  174 (394)
T ss_pred             ECCEEEEEcC--CCEEEEEECCCCCCcccccCCCce------ecCCEE-ECC-----EEEEECC----------CCEEEE
Confidence            4677776543  4678999999975  432 22110      111111 111     3444221          125677


Q ss_pred             EeCCCC--CcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCcc-
Q 015502          211 YDSDTM--MWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCAL-  285 (405)
Q Consensus       211 y~s~~~--~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~-  285 (405)
                      +|..++  .|+...............++..+|.+|+-...         ..+.++|..+.+  |+.    + +..|... 
T Consensus       175 ld~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~~W~~----~-~~~~~~~~  240 (394)
T PRK11138        175 LNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN---------GRVSAVLMEQGQLIWQQ----R-ISQPTGAT  240 (394)
T ss_pred             EEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC---------CEEEEEEccCChhhhee----c-cccCCCcc
Confidence            777554  48764321111112234667778888876532         379999998765  542    1 1112110 


Q ss_pred             -------ccCceEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEE
Q 015502          286 -------TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIY  356 (405)
Q Consensus       286 -------~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~  356 (405)
                             ....-+..+|.||+.+..         ..+...++.+  ..|+.-.  ..           .......++.||
T Consensus       241 ~~~~~~~~~~sP~v~~~~vy~~~~~---------g~l~ald~~tG~~~W~~~~--~~-----------~~~~~~~~~~vy  298 (394)
T PRK11138        241 EIDRLVDVDTTPVVVGGVVYALAYN---------GNLVALDLRSGQIVWKREY--GS-----------VNDFAVDGGRIY  298 (394)
T ss_pred             chhcccccCCCcEEECCEEEEEEcC---------CeEEEEECCCCCEEEeecC--CC-----------ccCcEEECCEEE
Confidence                   112334568888877642         2244444443  3587521  11           001123577888


Q ss_pred             EEeCCCCeEEEEECCCCc
Q 015502          357 IQSYGAPSLLVYDMNLKQ  374 (405)
Q Consensus       357 ~~~~~~~~~~~Yd~~~~~  374 (405)
                      +.. .+..++++|.++++
T Consensus       299 ~~~-~~g~l~ald~~tG~  315 (394)
T PRK11138        299 LVD-QNDRVYALDTRGGV  315 (394)
T ss_pred             EEc-CCCeEEEEECCCCc
Confidence            865 45689999999885

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=92.52  E-value=2.5  Score=39.42  Aligned_cols=128  Identities=15%  Similarity=0.102  Sum_probs=67.3

Q ss_pred             EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCcc---ccce
Q 015502          130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFF---QWEL  206 (405)
Q Consensus       130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~---~~~~  206 (405)
                      +.+..+..|++.+.  .....|||+.|+....+|.+......   .+.+.+..     +||++..........   ....
T Consensus        71 F~al~gskIv~~d~--~~~t~vyDt~t~av~~~P~l~~pk~~---pisv~VG~-----~LY~m~~~~~~~~~~~~~~~~F  140 (342)
T PF07893_consen   71 FFALHGSKIVAVDQ--SGRTLVYDTDTRAVATGPRLHSPKRC---PISVSVGD-----KLYAMDRSPFPEPAGRPDFPCF  140 (342)
T ss_pred             EEEecCCeEEEEcC--CCCeEEEECCCCeEeccCCCCCCCcc---eEEEEeCC-----eEEEeeccCccccccCccceeE
Confidence            44445666666543  36689999999999999987654422   23333311     588876532111100   0022


Q ss_pred             EEEEEe--------CCCCCcccccccccccccC-----CCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhh
Q 015502          207 SIHIYD--------SDTMMWVTSWKEVLTGWRA-----GDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHAL  273 (405)
Q Consensus       207 ~~~vy~--------s~~~~W~~~~~~~~~~~~~-----~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~  273 (405)
                      ++.+|+        ....+|+..+.|.......     ..+-++++|.-.|+....      ......+||.++.+|+.+
T Consensus       141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~------~~~GTysfDt~~~~W~~~  214 (342)
T PF07893_consen  141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNG------RRWGTYSFDTESHEWRKH  214 (342)
T ss_pred             EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecC------CceEEEEEEcCCcceeec
Confidence            344454        2345677754322111111     112234456555554221      013699999999999854

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=92.34  E-value=0.29  Score=30.96  Aligned_cols=43  Identities=12%  Similarity=0.108  Sum_probs=28.7

Q ss_pred             CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015502          239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC  287 (405)
Q Consensus       239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~  287 (405)
                      |+++|+.++... ........+.+||+.+.+|+.+     .++|..+..
T Consensus         1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~-----~~~P~~R~~   43 (49)
T PF13415_consen    1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRI-----GDLPPPRSG   43 (49)
T ss_pred             CCEEEEECCcCC-CCCCEecCEEEEECCCCEEEEC-----CCCCCCccc
Confidence            578899986541 1233446799999999999853     445554443

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=92.08  E-value=0.2  Score=31.71  Aligned_cols=40  Identities=20%  Similarity=0.496  Sum_probs=27.8

Q ss_pred             CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChh
Q 015502          294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHK  334 (405)
Q Consensus       294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~  334 (405)
                      +++||++++... ........+-+++++..+|+++..+|..
T Consensus         1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~~~~P~~   40 (49)
T PF13415_consen    1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRIGDLPPP   40 (49)
T ss_pred             CCEEEEECCcCC-CCCCEecCEEEEECCCCEEEECCCCCCC
Confidence            578999998752 1122345566777768899999877764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.46  E-value=14  Score=35.50  Aligned_cols=147  Identities=14%  Similarity=0.076  Sum_probs=78.4

Q ss_pred             eEEEEEeCCCC-----CcccccccccccccCCCc-cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc---chhhhcc
Q 015502          206 LSIHIYDSDTM-----MWVTSWKEVLTGWRAGDE-SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS---SHALLIK  276 (405)
Q Consensus       206 ~~~~vy~s~~~-----~W~~~~~~~~~~~~~~~~-~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~---w~~~~~~  276 (405)
                      ..+.+.+...+     .|+.+...    ...... ....++.+|++...     ......|+++++.+-.   |..+   
T Consensus       252 s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~~~~~yi~Tn~-----~a~~~~l~~~~l~~~~~~~~~~~---  319 (414)
T PF02897_consen  252 SEVYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHHGDRLYILTND-----DAPNGRLVAVDLADPSPAEWWTV---  319 (414)
T ss_dssp             EEEEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEETTEEEEEE-T-----T-TT-EEEEEETTSTSGGGEEEE---
T ss_pred             CeEEEEeccccCCCcCCcEEEeCC----CCceEEEEEccCCEEEEeeCC-----CCCCcEEEEecccccccccceeE---
Confidence            46777887664     56554321    111111 23448899998853     2334689999998766   4321   


Q ss_pred             cccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCE
Q 015502          277 SFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDL  354 (405)
Q Consensus       277 ~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~  354 (405)
                       +++-.....-..+...++.|++....+      ....+.++.++.+.......+|...        .+.+.  ...++.
T Consensus       320 -l~~~~~~~~l~~~~~~~~~Lvl~~~~~------~~~~l~v~~~~~~~~~~~~~~p~~g--------~v~~~~~~~~~~~  384 (414)
T PF02897_consen  320 -LIPEDEDVSLEDVSLFKDYLVLSYREN------GSSRLRVYDLDDGKESREIPLPEAG--------SVSGVSGDFDSDE  384 (414)
T ss_dssp             -EE--SSSEEEEEEEEETTEEEEEEEET------TEEEEEEEETT-TEEEEEEESSSSS--------EEEEEES-TT-SE
T ss_pred             -EcCCCCceeEEEEEEECCEEEEEEEEC------CccEEEEEECCCCcEEeeecCCcce--------EEeccCCCCCCCE
Confidence             122111112233455678888776532      3567888877722222223333211        12222  235667


Q ss_pred             EEEEeC---CCCeEEEEECCCCcEEEcc
Q 015502          355 IYIQSY---GAPSLLVYDMNLKQWRWSH  379 (405)
Q Consensus       355 i~~~~~---~~~~~~~Yd~~~~~w~~l~  379 (405)
                      +++...   ....++.||+++++.+.+.
T Consensus       385 ~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  385 LRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             EEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             EEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence            776532   3468999999999988763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF13854 Kelch_5: Kelch motif

Probab=90.40  E-value=0.6  Score=28.38  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=26.5

Q ss_pred             ccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCC
Q 015502          229 WRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSS  267 (405)
Q Consensus       229 ~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~  267 (405)
                      .+..+.++.+++.||+.|+..+ ........+..||+.+
T Consensus         4 ~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    4 PRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence            3556778889999999996542 1233445788888764

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=90.07  E-value=5.9  Score=35.07  Aligned_cols=138  Identities=15%  Similarity=0.250  Sum_probs=79.4

Q ss_pred             CCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc------------cCceEEeCCcEE
Q 015502          231 AGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT------------CGRLMNLKEKLV  298 (405)
Q Consensus       231 ~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~------------~~~l~~~~G~L~  298 (405)
                      .+...|+.||.+|.-...        ...|+.||+.++.-..     ...+|....            ...+++-+..|.
T Consensus        70 ~GtG~vVYngslYY~~~~--------s~~IvkydL~t~~v~~-----~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLW  136 (250)
T PF02191_consen   70 QGTGHVVYNGSLYYNKYN--------SRNIVKYDLTTRSVVA-----RRELPGAGYNNRFPYYWSGYTDIDFAVDENGLW  136 (250)
T ss_pred             ccCCeEEECCcEEEEecC--------CceEEEEECcCCcEEE-----EEECCccccccccceecCCCceEEEEEcCCCEE
Confidence            345678899999998743        3689999999988431     123343211            123566677888


Q ss_pred             EEEccccccccCccceEEEEEEeC------ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC----CCCeEEEE
Q 015502          299 MVGGIGKQDRPDIIKGIGIWVLNG------KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY----GAPSLLVY  368 (405)
Q Consensus       299 ~v~~~~~~~~~~~~~~~~vw~l~~------~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~Y  368 (405)
                      +|-.....     ...+.|=+|+.      +.|..  .++.....   +  .++.    .+++|....    ..+..++|
T Consensus       137 vIYat~~~-----~g~ivvskld~~tL~v~~tw~T--~~~k~~~~---n--aFmv----CGvLY~~~s~~~~~~~I~yaf  200 (250)
T PF02191_consen  137 VIYATEDN-----NGNIVVSKLDPETLSVEQTWNT--SYPKRSAG---N--AFMV----CGVLYATDSYDTRDTEIFYAF  200 (250)
T ss_pred             EEEecCCC-----CCcEEEEeeCcccCceEEEEEe--ccCchhhc---c--eeeE----eeEEEEEEECCCCCcEEEEEE
Confidence            88554321     12367777774      46764  23322111   0  1222    357777643    24577899


Q ss_pred             ECCCCcEEEccCCCCCCCCcccceeeeeecee
Q 015502          369 DMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPR  400 (405)
Q Consensus       369 d~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p~  400 (405)
                      |+.+++-+.+ ..|....  ......+.|-|+
T Consensus       201 Dt~t~~~~~~-~i~f~~~--~~~~~~l~YNP~  229 (250)
T PF02191_consen  201 DTYTGKEEDV-SIPFPNP--YGNISMLSYNPR  229 (250)
T ss_pred             ECCCCceece-eeeeccc--cCceEeeeECCC
Confidence            9999987654 3443322  233456666664

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>smart00284 OLF Olfactomedin-like domains

Probab=89.83  E-value=4.7  Score=35.61  Aligned_cols=137  Identities=17%  Similarity=0.267  Sum_probs=76.7

Q ss_pred             CCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc-------c-----ccCceEEeCCcEEE
Q 015502          232 GDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA-------L-----TCGRLMNLKEKLVM  299 (405)
Q Consensus       232 ~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~-------~-----~~~~l~~~~G~L~~  299 (405)
                      +...|+.||.+|+-...        ...|+.||+.++.-..     ...+|..       +     ....+++-+.-|-+
T Consensus        76 GtG~VVYngslYY~~~~--------s~~iiKydL~t~~v~~-----~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWv  142 (255)
T smart00284       76 GTGVVVYNGSLYFNKFN--------SHDICRFDLTTETYQK-----EPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWV  142 (255)
T ss_pred             cccEEEECceEEEEecC--------CccEEEEECCCCcEEE-----EEecCccccccccccccCCCccEEEEEcCCceEE
Confidence            45678999999996532        2579999999988531     1223321       1     11236677778888


Q ss_pred             EEccccccccCccceEEEEEEeC------ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC----CCCeEEEEE
Q 015502          300 VGGIGKQDRPDIIKGIGIWVLNG------KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY----GAPSLLVYD  369 (405)
Q Consensus       300 v~~~~~~~~~~~~~~~~vw~l~~------~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~Yd  369 (405)
                      |=.....     ...+.|=+|++      +.|..  .++..-.   +  ..++.    .+++|+...    ..+..++||
T Consensus       143 IYat~~~-----~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa---~--naFmv----CGvLY~~~s~~~~~~~I~yayD  206 (255)
T smart00284      143 IYATEQN-----AGKIVISKLNPATLTIENTWIT--TYNKRSA---S--NAFMI----CGILYVTRSLGSKGEKVFYAYD  206 (255)
T ss_pred             EEeccCC-----CCCEEEEeeCcccceEEEEEEc--CCCcccc---c--ccEEE----eeEEEEEccCCCCCcEEEEEEE
Confidence            8543221     24466667764      46766  2222111   1  01222    357777642    346788999


Q ss_pred             CCCCcEEEccCCCCCCCCcccceeeeeecee
Q 015502          370 MNLKQWRWSHKCPVTKRFPLQLFTGFCFEPR  400 (405)
Q Consensus       370 ~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p~  400 (405)
                      ..+++-+.+ ..|....  ......+-|-|+
T Consensus       207 t~t~~~~~~-~i~f~n~--y~~~s~l~YNP~  234 (255)
T smart00284      207 TNTGKEGHL-DIPFENM--YEYISMLDYNPN  234 (255)
T ss_pred             CCCCcccee-eeeeccc--cccceeceeCCC
Confidence            999875543 4443322  233445555553

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.25  E-value=9.5  Score=33.88  Aligned_cols=116  Identities=16%  Similarity=0.171  Sum_probs=67.0

Q ss_pred             EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015502          130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH  209 (405)
Q Consensus       130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~  209 (405)
                      +|+.-+|-|...... .+-+..+||+++.-..+|.+.... ...  =.+..|+..   .+.+. ...        .-.++
T Consensus       194 i~atpdGsvwyasla-gnaiaridp~~~~aev~p~P~~~~-~gs--Rriwsdpig---~~wit-twg--------~g~l~  257 (353)
T COG4257         194 ICATPDGSVWYASLA-GNAIARIDPFAGHAEVVPQPNALK-AGS--RRIWSDPIG---RAWIT-TWG--------TGSLH  257 (353)
T ss_pred             eEECCCCcEEEEecc-ccceEEcccccCCcceecCCCccc-ccc--cccccCccC---cEEEe-ccC--------Cceee
Confidence            677778887776432 366788999999888887664211 100  112233332   23332 111        23789


Q ss_pred             EEeCCCCCcccccccccccccCCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcch
Q 015502          210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSH  271 (405)
Q Consensus       210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~  271 (405)
                      .|+....+|++-..|   +......++.+ +.-..|+...       ....|..||+++.+|+
T Consensus       258 rfdPs~~sW~eypLP---gs~arpys~rVD~~grVW~sea-------~agai~rfdpeta~ft  310 (353)
T COG4257         258 RFDPSVTSWIEYPLP---GSKARPYSMRVDRHGRVWLSEA-------DAGAIGRFDPETARFT  310 (353)
T ss_pred             EeCcccccceeeeCC---CCCCCcceeeeccCCcEEeecc-------ccCceeecCcccceEE
Confidence            999999999885422   22222234554 2234455322       1258999999999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=89.10  E-value=15  Score=32.26  Aligned_cols=202  Identities=17%  Similarity=0.205  Sum_probs=102.2

Q ss_pred             cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015502          134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS  213 (405)
Q Consensus       134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s  213 (405)
                      ..|-|++.+.. ...++.++|.+++...+..+.        ..++.++...  -++++...           ....++|.
T Consensus        10 ~~g~l~~~D~~-~~~i~~~~~~~~~~~~~~~~~--------~~G~~~~~~~--g~l~v~~~-----------~~~~~~d~   67 (246)
T PF08450_consen   10 RDGRLYWVDIP-GGRIYRVDPDTGEVEVIDLPG--------PNGMAFDRPD--GRLYVADS-----------GGIAVVDP   67 (246)
T ss_dssp             TTTEEEEEETT-TTEEEEEETTTTEEEEEESSS--------EEEEEEECTT--SEEEEEET-----------TCEEEEET
T ss_pred             CCCEEEEEEcC-CCEEEEEECCCCeEEEEecCC--------CceEEEEccC--CEEEEEEc-----------CceEEEec
Confidence            35667776643 478999999999876654332        2355554211  24454432           24566688


Q ss_pred             CCCCcccccccccc--cccCCCcc-EEECcEEEeeEEecCCCCCCCc--cEEEEEECCCCcchhhhcccccccCCccccC
Q 015502          214 DTMMWVTSWKEVLT--GWRAGDES-IICDGVLYFLIYATGGGAPENR--HGLISFNLSSRSSHALLIKSFIPVPCALTCG  288 (405)
Q Consensus       214 ~~~~W~~~~~~~~~--~~~~~~~~-v~~~g~iy~l~~~~~~~~~~~~--~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~  288 (405)
                      .++.++........  .....+.. +--+|.+|+-......  ....  ..++.+++. .+...+.  ..+..|    . 
T Consensus        68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~--~~~~~~g~v~~~~~~-~~~~~~~--~~~~~p----N-  137 (246)
T PF08450_consen   68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG--ASGIDPGSVYRIDPD-GKVTVVA--DGLGFP----N-  137 (246)
T ss_dssp             TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC--TTCGGSEEEEEEETT-SEEEEEE--EEESSE----E-
T ss_pred             CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc--cccccccceEEECCC-CeEEEEe--cCcccc----c-
Confidence            88888765432100  11111112 2228888876543211  1112  579999998 4433110  111222    1 


Q ss_pred             ceE-EeCCc-EEEEEccccccccCccceEEEEEEeCc--eeEEEe---ccChhHHhccCCCCceeEEeeCCCEEEEEeCC
Q 015502          289 RLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGK--EWQEVA---RMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG  361 (405)
Q Consensus       289 ~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~--~W~~v~---~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  361 (405)
                      .++ .-+|+ ||+....        ...+..+.++..  ++....   .++...     ...+-+++.. .+.||+....
T Consensus       138 Gi~~s~dg~~lyv~ds~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----g~pDG~~vD~-~G~l~va~~~  203 (246)
T PF08450_consen  138 GIAFSPDGKTLYVADSF--------NGRIWRFDLDADGGELSNRRVFIDFPGGP-----GYPDGLAVDS-DGNLWVADWG  203 (246)
T ss_dssp             EEEEETTSSEEEEEETT--------TTEEEEEEEETTTCCEEEEEEEEE-SSSS-----CEEEEEEEBT-TS-EEEEEET
T ss_pred             ceEECCcchheeecccc--------cceeEEEeccccccceeeeeeEEEcCCCC-----cCCCcceEcC-CCCEEEEEcC
Confidence            233 34565 6665542        244666777642  344322   222211     0112334333 5567887666


Q ss_pred             CCeEEEEECCCCcEEEccCCC
Q 015502          362 APSLLVYDMNLKQWRWSHKCP  382 (405)
Q Consensus       362 ~~~~~~Yd~~~~~w~~l~~~p  382 (405)
                      ...+++||++.+....++ .|
T Consensus       204 ~~~I~~~~p~G~~~~~i~-~p  223 (246)
T PF08450_consen  204 GGRIVVFDPDGKLLREIE-LP  223 (246)
T ss_dssp             TTEEEEEETTSCEEEEEE--S
T ss_pred             CCEEEEECCCccEEEEEc-CC
Confidence            789999999965555553 44

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=87.22  E-value=26  Score=32.90  Aligned_cols=179  Identities=16%  Similarity=0.144  Sum_probs=86.3

Q ss_pred             ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC---CCCcccccc
Q 015502          147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD---TMMWVTSWK  223 (405)
Q Consensus       147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~---~~~W~~~~~  223 (405)
                      ..+.+||..|++.+.+-+..  ..  .+....+..|++  +. ++.|+.         ...+..+|..   -+.|+-...
T Consensus       291 e~~~lwDv~tgd~~~~y~~~--~~--~S~~sc~W~pDg--~~-~V~Gs~---------dr~i~~wdlDgn~~~~W~gvr~  354 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSG--LG--FSVSSCAWCPDG--FR-FVTGSP---------DRTIIMWDLDGNILGNWEGVRD  354 (519)
T ss_pred             HheeeccCCcchhhhhcccC--cC--CCcceeEEccCC--ce-eEecCC---------CCcEEEecCCcchhhccccccc
Confidence            45778999998887663321  11  111222222332  22 333421         2356666653   567877643


Q ss_pred             cccccccCCCccEEECc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEc
Q 015502          224 EVLTGWRAGDESIICDG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGG  302 (405)
Q Consensus       224 ~~~~~~~~~~~~v~~~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~  302 (405)
                      |-..     .-++..+| .++.++..         ..+.-|+.++..=..     .+..... ....-...+|++.++..
T Consensus       355 ~~v~-----dlait~Dgk~vl~v~~d---------~~i~l~~~e~~~dr~-----lise~~~-its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  355 PKVH-----DLAITYDGKYVLLVTVD---------KKIRLYNREARVDRG-----LISEEQP-ITSFSISKDGKLALVNL  414 (519)
T ss_pred             ceeE-----EEEEcCCCcEEEEEecc---------cceeeechhhhhhhc-----cccccCc-eeEEEEcCCCcEEEEEc
Confidence            2110     11233344 44445432         357777776654110     1221111 12223455789999986


Q ss_pred             cccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe-CCCCeEEEEECCCCcE
Q 015502          303 IGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS-YGAPSLLVYDMNLKQW  375 (405)
Q Consensus       303 ~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~Yd~~~~~w  375 (405)
                      .        ...+.+|+++  +|..+.+.    +---.+...+-.|.|.++.-|+.+ .++..++++|..+++-
T Consensus       415 ~--------~qei~LWDl~--e~~lv~kY----~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl  474 (519)
T KOG0293|consen  415 Q--------DQEIHLWDLE--ENKLVRKY----FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL  474 (519)
T ss_pred             c--------cCeeEEeecc--hhhHHHHh----hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence            3        3569999998  55443321    100000112334544444334433 3566777777776654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=87.13  E-value=27  Score=32.93  Aligned_cols=213  Identities=15%  Similarity=0.150  Sum_probs=105.7

Q ss_pred             CeeEEecCCCCe--eeeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEe
Q 015502          104 PIGYAYDPILRK--WYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVD  181 (405)
Q Consensus       104 ~~~~~~d~~~~~--w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~  181 (405)
                      ...+++|...++  |.. .++.....  -....++.+++...  ...++.+|+.|++-.---..+...   .....+ . 
T Consensus        75 g~v~a~d~~tG~~~W~~-~~~~~~~~--~p~v~~~~v~v~~~--~g~l~ald~~tG~~~W~~~~~~~~---~~~p~v-~-  144 (377)
T TIGR03300        75 GTVVALDAETGKRLWRV-DLDERLSG--GVGADGGLVFVGTE--KGEVIALDAEDGKELWRAKLSSEV---LSPPLV-A-  144 (377)
T ss_pred             CeEEEEEccCCcEeeee-cCCCCccc--ceEEcCCEEEEEcC--CCEEEEEECCCCcEeeeeccCcee---ecCCEE-E-
Confidence            357788876654  532 22211111  12234677776543  367889999887643211111100   000111 1 


Q ss_pred             CCCCcEEEEEEeeeccCCCccccceEEEEEeCCC--CCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccE
Q 015502          182 RVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDT--MMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHG  259 (405)
Q Consensus       182 ~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~--~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~  259 (405)
                         +. +|++...          .-.+..+|..+  -.|+...............++..+|.+|+-..         ...
T Consensus       145 ---~~-~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~---------~g~  201 (377)
T TIGR03300       145 ---NG-LVVVRTN----------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA---------GGK  201 (377)
T ss_pred             ---CC-EEEEECC----------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC---------CCE
Confidence               11 3444321          12567777654  45765432111112223456777887765432         137


Q ss_pred             EEEEECCCCc--chhhhcccccccCCcc--------ccCceEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEE
Q 015502          260 LISFNLSSRS--SHALLIKSFIPVPCAL--------TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQE  327 (405)
Q Consensus       260 i~~fD~~~~~--w~~~~~~~~~~~p~~~--------~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~  327 (405)
                      +.++|+++.+  |+.    . ...|...        .....+..+|.+|+.+..         ..+..+++++  ..|..
T Consensus       202 v~ald~~tG~~~W~~----~-~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~---------g~l~a~d~~tG~~~W~~  267 (377)
T TIGR03300       202 LVALDLQTGQPLWEQ----R-VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ---------GRVAALDLRSGRVLWKR  267 (377)
T ss_pred             EEEEEccCCCEeeee----c-cccCCCCCchhhhhccCCccEEECCEEEEEEcC---------CEEEEEECCCCcEEEee
Confidence            9999997754  542    1 1112110        112334567888877642         2366666654  35765


Q ss_pred             EeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCc--EEE
Q 015502          328 VARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQ--WRW  377 (405)
Q Consensus       328 v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~--w~~  377 (405)
                      -.  +.        . ..+  ...++.||+.. .+..++++|..+++  |+.
T Consensus       268 ~~--~~--------~-~~p--~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       268 DA--SS--------Y-QGP--AVDDNRLYVTD-ADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             cc--CC--------c-cCc--eEeCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence            31  10        0 011  12577888864 45689999998874  544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=86.92  E-value=29  Score=33.05  Aligned_cols=105  Identities=12%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCccccCceEEeCCcEEEEEccccccccC
Q 015502          233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPD  310 (405)
Q Consensus       233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~  310 (405)
                      ..+++.+|.+|+....         ..+.++|+.+.+  |+.       +...   ...++..+|+||+....       
T Consensus       250 ~sP~v~~~~vy~~~~~---------g~l~ald~~tG~~~W~~-------~~~~---~~~~~~~~~~vy~~~~~-------  303 (394)
T PRK11138        250 TTPVVVGGVVYALAYN---------GNLVALDLRSGQIVWKR-------EYGS---VNDFAVDGGRIYLVDQN-------  303 (394)
T ss_pred             CCcEEECCEEEEEEcC---------CeEEEEECCCCCEEEee-------cCCC---ccCcEEECCEEEEEcCC-------
Confidence            4577889999987643         379999998764  542       1111   12356678899987642       


Q ss_pred             ccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015502          311 IIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR  376 (405)
Q Consensus       311 ~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~  376 (405)
                        ..+...+.++  ..|..-. +.....      ...   ...++.||+.. .+..++++|.++++-.
T Consensus       304 --g~l~ald~~tG~~~W~~~~-~~~~~~------~sp---~v~~g~l~v~~-~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        304 --DRVYALDTRGGVELWSQSD-LLHRLL------TAP---VLYNGYLVVGD-SEGYLHWINREDGRFV  358 (394)
T ss_pred             --CeEEEEECCCCcEEEcccc-cCCCcc------cCC---EEECCEEEEEe-CCCEEEEEECCCCCEE
Confidence              2244444443  3575311 111000      011   12467788764 4567889999988643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=86.14  E-value=29  Score=32.35  Aligned_cols=118  Identities=14%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             cEEEeeEEecCCCCCCCccEEEEEECC--CCcchhhhcccccccCCcc----ccCceEEe-CCc-EEEEEccccccccCc
Q 015502          240 GVLYFLIYATGGGAPENRHGLISFNLS--SRSSHALLIKSFIPVPCAL----TCGRLMNL-KEK-LVMVGGIGKQDRPDI  311 (405)
Q Consensus       240 g~iy~l~~~~~~~~~~~~~~i~~fD~~--~~~w~~~~~~~~~~~p~~~----~~~~l~~~-~G~-L~~v~~~~~~~~~~~  311 (405)
                      ..+|++...        ...|.+|+..  +..++.+-.  .-..|...    ....+... +|+ ||+..+.        
T Consensus       204 ~~~Yv~~e~--------s~~v~v~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--------  265 (345)
T PF10282_consen  204 KYAYVVNEL--------SNTVSVFDYDPSDGSLTEIQT--ISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--------  265 (345)
T ss_dssp             SEEEEEETT--------TTEEEEEEEETTTTEEEEEEE--EESCETTSCSSSSEEEEEE-TTSSEEEEEECT--------
T ss_pred             CEEEEecCC--------CCcEEEEeecccCCceeEEEE--eeeccccccccCCceeEEEecCCCEEEEEecc--------
Confidence            467787633        2466666666  555443211  11223222    12234444 565 5554432        


Q ss_pred             cceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEE--CCCCcEEEccC
Q 015502          312 IKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYD--MNLKQWRWSHK  380 (405)
Q Consensus       312 ~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd--~~~~~w~~l~~  380 (405)
                      ...+.+|.++.  +..+.+..++..     +..+.-+.+...|+.+|+.......+.+|+  .++++++.+..
T Consensus       266 ~~sI~vf~~d~~~g~l~~~~~~~~~-----G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~  333 (345)
T PF10282_consen  266 SNSISVFDLDPATGTLTLVQTVPTG-----GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS  333 (345)
T ss_dssp             TTEEEEEEECTTTTTEEEEEEEEES-----SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEEEecCCCceEEEEEEeCC-----CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence            46799999964  466666555421     111233555678999999887777888885  57888988763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=84.44  E-value=27  Score=30.55  Aligned_cols=219  Identities=16%  Similarity=0.096  Sum_probs=102.4

Q ss_pred             cCCCCeeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEE
Q 015502          100 SSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS  179 (405)
Q Consensus       100 ~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~  179 (405)
                      .......+.+++..+....+..+. + .-..+...+|.+++...   ....++|+.++++..+...+.........--+.
T Consensus        18 D~~~~~i~~~~~~~~~~~~~~~~~-~-~G~~~~~~~g~l~v~~~---~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~   92 (246)
T PF08450_consen   18 DIPGGRIYRVDPDTGEVEVIDLPG-P-NGMAFDRPDGRLYVADS---GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVA   92 (246)
T ss_dssp             ETTTTEEEEEETTTTEEEEEESSS-E-EEEEEECTTSEEEEEET---TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEE
T ss_pred             EcCCCEEEEEECCCCeEEEEecCC-C-ceEEEEccCCEEEEEEc---CceEEEecCCCcEEEEeeccCCCcccCCCceEE
Confidence            334445677888777655555443 1 11123334677777654   445666999999988765531110111122344


Q ss_pred             EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCC
Q 015502          180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPEN  256 (405)
Q Consensus       180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~  256 (405)
                      +|+..   .+++........... ..-.+..++.. ++.......    .. ..+++.+  +| .+|+...        .
T Consensus        93 vd~~G---~ly~t~~~~~~~~~~-~~g~v~~~~~~-~~~~~~~~~----~~-~pNGi~~s~dg~~lyv~ds--------~  154 (246)
T PF08450_consen   93 VDPDG---NLYVTDSGGGGASGI-DPGSVYRIDPD-GKVTVVADG----LG-FPNGIAFSPDGKTLYVADS--------F  154 (246)
T ss_dssp             E-TTS----EEEEEECCBCTTCG-GSEEEEEEETT-SEEEEEEEE----ES-SEEEEEEETTSSEEEEEET--------T
T ss_pred             EcCCC---CEEEEecCCCccccc-cccceEEECCC-CeEEEEecC----cc-cccceEECCcchheeeccc--------c
Confidence            55544   355543211111100 01356667766 554443221    11 1234444  45 5777542        2


Q ss_pred             ccEEEEEECCCCcc--hhhhcccccccCCcc--ccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015502          257 RHGLISFNLSSRSS--HALLIKSFIPVPCAL--TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP  332 (405)
Q Consensus       257 ~~~i~~fD~~~~~w--~~~~~~~~~~~p~~~--~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~  332 (405)
                      ...|.+||+..+..  ...  ..++..+...  ..+-.+..+|.|++....        ...+.++..+ ++=...-.+|
T Consensus       155 ~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--------~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNR--RVFIDFPGGPGYPDGLAVDSDGNLWVADWG--------GGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEE--EEEEE-SSSSCEEEEEEEBTTS-EEEEEET--------TTEEEEEETT-SCEEEEEE-S
T ss_pred             cceeEEEeccccccceeee--eeEEEcCCCCcCCCcceEcCCCCEEEEEcC--------CCEEEEECCC-ccEEEEEcCC
Confidence            35799999965442  211  0122333322  112234467999988642        2346666655 3333333344


Q ss_pred             hhHHhccCCCCceeEEee-CCCEEEEEe
Q 015502          333 HKFFQGFGEFDDVFASSG-TDDLIYIQS  359 (405)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~  359 (405)
                      -..       ..-+++.+ ..+.+|+..
T Consensus       224 ~~~-------~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  224 VPR-------PTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSS-------EEEEEEESTTSSEEEEEE
T ss_pred             CCC-------EEEEEEECCCCCEEEEEe
Confidence            211       11223333 567888864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=82.43  E-value=31  Score=29.72  Aligned_cols=108  Identities=9%  Similarity=0.094  Sum_probs=61.6

Q ss_pred             cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCccccCceEEeCCcEEEEEccccccccCcc
Q 015502          235 SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDII  312 (405)
Q Consensus       235 ~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~  312 (405)
                      ++.-+|.+|+...         ...|.++|..+.+  |+       ...+...... ....+++|++....         
T Consensus        32 ~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~W~-------~~~~~~~~~~-~~~~~~~v~v~~~~---------   85 (238)
T PF13360_consen   32 AVPDGGRVYVASG---------DGNLYALDAKTGKVLWR-------FDLPGPISGA-PVVDGGRVYVGTSD---------   85 (238)
T ss_dssp             EEEETTEEEEEET---------TSEEEEEETTTSEEEEE-------EECSSCGGSG-EEEETTEEEEEETT---------
T ss_pred             EEEeCCEEEEEcC---------CCEEEEEECCCCCEEEE-------eeccccccce-eeecccccccccce---------
Confidence            3447889988842         2489999997765  43       2323322222 46778888888731         


Q ss_pred             ceEEEEEEeC--ceeE-EEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015502          313 KGIGIWVLNG--KEWQ-EVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW  375 (405)
Q Consensus       313 ~~~~vw~l~~--~~W~-~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w  375 (405)
                      ..+..++..+  ..|+ ....-+.....      ........++.+++... ...++++|+++++-
T Consensus        86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~  144 (238)
T PF13360_consen   86 GSLYALDAKTGKVLWSIYLTSSPPAGVR------SSSSPAVDGDRLYVGTS-SGKLVALDPKTGKL  144 (238)
T ss_dssp             SEEEEEETTTSCEEEEEEE-SSCTCSTB--------SEEEEETTEEEEEET-CSEEEEEETTTTEE
T ss_pred             eeeEecccCCcceeeeeccccccccccc------cccCceEecCEEEEEec-cCcEEEEecCCCcE
Confidence            2244444333  3688 44332221110      11122234778877653 56899999998855

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=82.32  E-value=42  Score=31.08  Aligned_cols=83  Identities=28%  Similarity=0.360  Sum_probs=46.1

Q ss_pred             CceEEe---CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCC-EEEEEeCCCC
Q 015502          288 GRLMNL---KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDD-LIYIQSYGAP  363 (405)
Q Consensus       288 ~~l~~~---~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~  363 (405)
                      .+++.+   .|+||++.+.+ .........-+||.+|-..=+++.+++.+--.      ..+++..+.+ ++|.....+.
T Consensus       240 ~Q~~A~~~~~~rlyvLMh~g-~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~------~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  240 WQLIAYHAASGRLYVLMHQG-GEGSHKDPGTEVWVYDLKTHKRVARIPLEHPI------DSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             SS-EEEETTTTEEEEEEEE---TT-TTS-EEEEEEEETTTTEEEEEEEEEEEE------SEEEEESSSS-EEEEEETTTT
T ss_pred             eeeeeeccccCeEEEEecCC-CCCCccCCceEEEEEECCCCeEEEEEeCCCcc------ceEEEccCCCcEEEEEcCCCC
Confidence            344443   47999886532 22233345689999996554566666532100      1234444444 5665555667


Q ss_pred             eEEEEECCCCcEEE
Q 015502          364 SLLVYDMNLKQWRW  377 (405)
Q Consensus       364 ~~~~Yd~~~~~w~~  377 (405)
                      .+++||..+++-..
T Consensus       313 ~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  313 TLDVYDAATGKLVR  326 (342)
T ss_dssp             EEEEEETTT--EEE
T ss_pred             eEEEEeCcCCcEEe
Confidence            89999999996543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=81.59  E-value=52  Score=31.69  Aligned_cols=149  Identities=17%  Similarity=0.168  Sum_probs=0.0

Q ss_pred             CccEEECcEEEeeEEecCCCCC---------------------------------CCccEEEEEECCCCcchhhhccccc
Q 015502          233 DESIICDGVLYFLIYATGGGAP---------------------------------ENRHGLISFNLSSRSSHALLIKSFI  279 (405)
Q Consensus       233 ~~~v~~~g~iy~l~~~~~~~~~---------------------------------~~~~~i~~fD~~~~~w~~~~~~~~~  279 (405)
                      ..++.+++.+|++..+.|.+.-                                 +....|.-|||++++-+.+    .|
T Consensus       229 S~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekl----dI  304 (668)
T COG4946         229 SSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKL----DI  304 (668)
T ss_pred             CCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceee----ec


Q ss_pred             ccCCcc---------------------ccCceEEeCCcEEEEEccccc-----------------------cccCccceE
Q 015502          280 PVPCAL---------------------TCGRLMNLKEKLVMVGGIGKQ-----------------------DRPDIIKGI  315 (405)
Q Consensus       280 ~~p~~~---------------------~~~~l~~~~G~L~~v~~~~~~-----------------------~~~~~~~~~  315 (405)
                      .+|..+                     ......++.|+-++.......                       .+....+.+
T Consensus       305 ~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l  384 (668)
T COG4946         305 GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKL  384 (668)
T ss_pred             CCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceE


Q ss_pred             EEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCCCCcccceeee
Q 015502          316 GIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGF  395 (405)
Q Consensus       316 ~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~  395 (405)
                      .|+..+..+-+++..=-..++.        +++...|+.+.+.+ ....+.++|+++++-+.+      ...+....++|
T Consensus       385 ~iyd~~~~e~kr~e~~lg~I~a--------v~vs~dGK~~vvaN-dr~el~vididngnv~~i------dkS~~~lItdf  449 (668)
T COG4946         385 GIYDKDGGEVKRIEKDLGNIEA--------VKVSPDGKKVVVAN-DRFELWVIDIDNGNVRLI------DKSEYGLITDF  449 (668)
T ss_pred             EEEecCCceEEEeeCCccceEE--------EEEcCCCcEEEEEc-CceEEEEEEecCCCeeEe------cccccceeEEE


Q ss_pred             eecee
Q 015502          396 CFEPR  400 (405)
Q Consensus       396 ~~~p~  400 (405)
                      ...|+
T Consensus       450 ~~~~n  454 (668)
T COG4946         450 DWHPN  454 (668)
T ss_pred             EEcCC

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=81.44  E-value=35  Score=29.65  Aligned_cols=97  Identities=9%  Similarity=0.074  Sum_probs=59.0

Q ss_pred             CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015502          146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV  225 (405)
Q Consensus       146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~  225 (405)
                      ++.+++||..|++..+---   .+....+++.|.-+.     .|++.++.         ...+.+||-++.+-..+.  .
T Consensus        80 Dk~v~vwDV~TGkv~Rr~r---gH~aqVNtV~fNees-----SVv~Sgsf---------D~s~r~wDCRS~s~ePiQ--i  140 (307)
T KOG0316|consen   80 DKAVQVWDVNTGKVDRRFR---GHLAQVNTVRFNEES-----SVVASGSF---------DSSVRLWDCRSRSFEPIQ--I  140 (307)
T ss_pred             CceEEEEEcccCeeeeecc---cccceeeEEEecCcc-----eEEEeccc---------cceeEEEEcccCCCCccc--h
Confidence            4889999999998754210   111112334443221     46665543         347889998888775543  2


Q ss_pred             cccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015502          226 LTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS  269 (405)
Q Consensus       226 ~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~  269 (405)
                      .........++.+.+...+-+...        ..+-.||+...+
T Consensus       141 ldea~D~V~Si~v~~heIvaGS~D--------GtvRtydiR~G~  176 (307)
T KOG0316|consen  141 LDEAKDGVSSIDVAEHEIVAGSVD--------GTVRTYDIRKGT  176 (307)
T ss_pred             hhhhcCceeEEEecccEEEeeccC--------CcEEEEEeecce
Confidence            333344556777888777766432        378999997665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=81.26  E-value=26  Score=31.15  Aligned_cols=106  Identities=15%  Similarity=0.159  Sum_probs=64.3

Q ss_pred             ECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEE
Q 015502          238 CDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGI  317 (405)
Q Consensus       238 ~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~v  317 (405)
                      .+|.+|--.+.      ..+..|..+|+.+.+-.     ...++|.....=.+...+++|+.++=.        ....-+
T Consensus        54 ~~g~LyESTG~------yG~S~l~~~d~~tg~~~-----~~~~l~~~~FgEGit~~~d~l~qLTWk--------~~~~f~  114 (264)
T PF05096_consen   54 DDGTLYESTGL------YGQSSLRKVDLETGKVL-----QSVPLPPRYFGEGITILGDKLYQLTWK--------EGTGFV  114 (264)
T ss_dssp             ETTEEEEEECS------TTEEEEEEEETTTSSEE-----EEEE-TTT--EEEEEEETTEEEEEESS--------SSEEEE
T ss_pred             CCCEEEEeCCC------CCcEEEEEEECCCCcEE-----EEEECCccccceeEEEECCEEEEEEec--------CCeEEE
Confidence            46788877643      24578999999998743     246778777666788999999999842        233555


Q ss_pred             EEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCC
Q 015502          318 WVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLK  373 (405)
Q Consensus       318 w~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~  373 (405)
                      |+.  ...+++.+++..     +   ...|.+.+|+.+++.. +...+...|+++=
T Consensus       115 yd~--~tl~~~~~~~y~-----~---EGWGLt~dg~~Li~SD-GS~~L~~~dP~~f  159 (264)
T PF05096_consen  115 YDP--NTLKKIGTFPYP-----G---EGWGLTSDGKRLIMSD-GSSRLYFLDPETF  159 (264)
T ss_dssp             EET--TTTEEEEEEE-S-----S---S--EEEECSSCEEEE--SSSEEEEE-TTT-
T ss_pred             Ecc--ccceEEEEEecC-----C---cceEEEcCCCEEEEEC-CccceEEECCccc
Confidence            544  445555554431     0   1235555666666653 5678888888764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13854 Kelch_5: Kelch motif

Probab=80.97  E-value=3.6  Score=24.88  Aligned_cols=37  Identities=14%  Similarity=0.231  Sum_probs=24.2

Q ss_pred             CCccccCceEEeCCcEEEEEccccccccCccceEEEEEEe
Q 015502          282 PCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN  321 (405)
Q Consensus       282 p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~  321 (405)
                      |..+....++..+++||+.++.... .  ....=++|.|+
T Consensus         2 P~~R~~hs~~~~~~~iyi~GG~~~~-~--~~~~~d~~~l~   38 (42)
T PF13854_consen    2 PSPRYGHSAVVVGNNIYIFGGYSGN-N--NSYSNDLYVLD   38 (42)
T ss_pred             CCCccceEEEEECCEEEEEcCccCC-C--CCEECcEEEEE
Confidence            5556666788889999999997531 1  12334666665

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=80.61  E-value=37  Score=29.40  Aligned_cols=162  Identities=11%  Similarity=0.042  Sum_probs=80.2

Q ss_pred             EEEEEeCCCCCcccccccccccccCCC--ccEEEC-----cEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccc
Q 015502          207 SIHIYDSDTMMWVTSWKEVLTGWRAGD--ESIICD-----GVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFI  279 (405)
Q Consensus       207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~--~~v~~~-----g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~  279 (405)
                      .+.|+++.|++|+..+.+.........  .+.-++     =|+-.+....+   ......+..|++.++.|..+.    .
T Consensus        15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~---~~~~~~~~Vys~~~~~Wr~~~----~   87 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG---NRNQSEHQVYTLGSNSWRTIE----C   87 (230)
T ss_pred             cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC---CCCCccEEEEEeCCCCccccc----c
Confidence            678999999999887532111000000  011111     13333322110   112357889999999998532    1


Q ss_pred             ccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe
Q 015502          280 PVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS  359 (405)
Q Consensus       280 ~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  359 (405)
                      ..+.......-+..+|.||.+.......   ....+-.|++.+++|.+.-.+|......   . ....+..-++.+.+..
T Consensus        88 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~P~~~~~~---~-~~~~L~~~~G~L~~v~  160 (230)
T TIGR01640        88 SPPHHPLKSRGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPLPCGNSDS---V-DYLSLINYKGKLAVLK  160 (230)
T ss_pred             CCCCccccCCeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeecCcccccc---c-cceEEEEECCEEEEEE
Confidence            1121111222456799999997542211   1125777888899999633455422110   0 0112222234555443


Q ss_pred             C--CCCeEEEEECC---CCcEEEccCCC
Q 015502          360 Y--GAPSLLVYDMN---LKQWRWSHKCP  382 (405)
Q Consensus       360 ~--~~~~~~~Yd~~---~~~w~~l~~~p  382 (405)
                      .  ....+.++-++   .++|+++-..+
T Consensus       161 ~~~~~~~~~IWvl~d~~~~~W~k~~~i~  188 (230)
T TIGR01640       161 QKKDTNNFDLWVLNDAGKQEWSKLFTVP  188 (230)
T ss_pred             ecCCCCcEEEEEECCCCCCceeEEEEEc
Confidence            2  11235565555   56798864443

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=80.06  E-value=44  Score=29.89  Aligned_cols=222  Identities=12%  Similarity=0.109  Sum_probs=118.8

Q ss_pred             EecCCCCeeeeccCCCCCCCCe-EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCc
Q 015502          108 AYDPILRKWYGIELPCIETSNW-FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHR  186 (405)
Q Consensus       108 ~~d~~~~~w~~~~~p~~~~~~~-~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~  186 (405)
                      ..||.+++....+++.-...+. +++-.++..++ +.  ..-+.-++|.|.+..+.|-+-. + ...+.--..+|+..  
T Consensus        87 hLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit-d~--~~aI~R~dpkt~evt~f~lp~~-~-a~~nlet~vfD~~G--  159 (353)
T COG4257          87 HLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT-DT--GLAIGRLDPKTLEVTRFPLPLE-H-ADANLETAVFDPWG--  159 (353)
T ss_pred             ecCCCCCceEEEecCCCCCCceEEECCCCCeeEe-cC--cceeEEecCcccceEEeecccc-c-CCCcccceeeCCCc--
Confidence            4788888888888775444444 44444444433 22  2367788999998888764421 1 11111122345443  


Q ss_pred             EEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEE
Q 015502          187 YTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFN  264 (405)
Q Consensus       187 ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD  264 (405)
                       .|.+.+....-+...-.+..+.||..-            .+.  ....++.  +|.+|+-...+        +.|...|
T Consensus       160 -~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~--gpyGi~atpdGsvwyaslag--------naiarid  216 (353)
T COG4257         160 -NLWFTGQIGAYGRLDPARNVISVFPAP------------QGG--GPYGICATPDGSVWYASLAG--------NAIARID  216 (353)
T ss_pred             -cEEEeeccccceecCcccCceeeeccC------------CCC--CCcceEECCCCcEEEEeccc--------cceEEcc
Confidence             444443211111000012344555421            111  1123444  89998875332        5789999


Q ss_pred             CCCCcchhhhcccccccCCcccc--CceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCC
Q 015502          265 LSSRSSHALLIKSFIPVPCALTC--GRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGE  341 (405)
Q Consensus       265 ~~~~~w~~~~~~~~~~~p~~~~~--~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~  341 (405)
                      +.+..=      ++++.|.....  +.+. ...|++.+..-.        ...+..|+....+|.+. .+|..--+    
T Consensus       217 p~~~~a------ev~p~P~~~~~gsRriwsdpig~~wittwg--------~g~l~rfdPs~~sW~ey-pLPgs~ar----  277 (353)
T COG4257         217 PFAGHA------EVVPQPNALKAGSRRIWSDPIGRAWITTWG--------TGSLHRFDPSVTSWIEY-PLPGSKAR----  277 (353)
T ss_pred             cccCCc------ceecCCCcccccccccccCccCcEEEeccC--------CceeeEeCcccccceee-eCCCCCCC----
Confidence            988752      35666765322  2222 334666655321        23456666666678773 34431111    


Q ss_pred             CCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccC
Q 015502          342 FDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHK  380 (405)
Q Consensus       342 ~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~  380 (405)
                       ..-+. +..-+.|++.......+..||+++.+++.++.
T Consensus       278 -pys~r-VD~~grVW~sea~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         278 -PYSMR-VDRHGRVWLSEADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             -cceee-eccCCcEEeeccccCceeecCcccceEEEecC
Confidence             01122 33456778865566789999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	3e-09
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-07
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	7e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	7e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	5e-04

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83
          LPD+LL  I + L +  + +   VC+RW+ + S    LW
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES-LW 49

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 51.1 bits (121), Expect = 2e-07
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 13/161 (8%)

Query: 31  EGNKEASTLSVDLI--LPDDLLERILAYLPIASIFRAG-CVCRRWHEIVSSRRF------ 81
           E  +E    +V+ +  LP+ LL R+LA LP   + +A   VC RW E+V           
Sbjct: 38  EAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ 97

Query: 82  ----LWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGL 137
               +   S    +  W   +  S        +P   +            + +       
Sbjct: 98  QEGLVPEGSADEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPG 157

Query: 138 VCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSL 178
              ++      +      S  W +  +   L+   Y    L
Sbjct: 158 DNGVEFTQDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELL 198

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 49.7 bits (118), Expect = 7e-07
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83
          LP D+   IL++L    + + G     W+E V     LW
Sbjct: 8  LPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPI-LW 45

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83
          LPD+LL  I + L +  + +   VC+RW+ + S    LW
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES-LW 49

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 45 LPDDLLERILAYLPIAS-IFRAGCVCRRWHEIVSSRRF 81
           P+++LE + +++ +         VC+ W+EI    R 
Sbjct: 9  FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRR 46

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 20/90 (22%)

Query: 45  LPDDLLERILAYLPIAS-IFRAGCVCRRWHEI---------------VSSRRFLWNFSNV 88
             DD++E+++ Y+        A  VCRRW +I                +  R    F N+
Sbjct: 16  TVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNL 75

Query: 89  ----LSQKPWYFMFTSSDEPIGYAYDPILR 114
               L  KP   MF    E  G    P + 
Sbjct: 76  RSLKLKGKPRAAMFNLIPENWGGYVTPWVT 105

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 39  LSVDLI--LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYF 96
           L  DLI  LP ++  +I  YL    I  +  V + W++I+     LW    +        
Sbjct: 10  LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPK 69

Query: 97  MFTSSDEPIGYAY 109
            F S +  +   Y
Sbjct: 70  GFNSLNLKLSQKY 82

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 38 TLSVDLI--LPDDLLERILAYLPIASIFRAGCVCRRWHEIVS 77
              D I  LP +L   +L++L    + +A   CR W  +  
Sbjct: 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.88
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.86
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.86
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.86
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.85
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.85
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.76
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.76
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.75
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.74
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.73
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.72
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.68
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.61
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.46
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.42
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.1
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.0
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.86
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.71
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.99
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.46
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.11
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.96
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	95.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.4
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.29
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.27
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.01
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.97
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.39
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	93.63
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	93.48
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	93.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	92.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	92.72
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	92.72
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	92.6
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	91.99
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.69
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	91.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	90.69
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	90.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	89.38
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	88.09
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	87.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	87.79
3jro_A	753	Fusion protein of protein transport protein SEC13	87.62
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	87.27
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	86.98
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	86.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	86.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	86.57
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	86.51
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	84.76
3jrp_A	379	Fusion protein of protein transport protein SEC13	84.65
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	83.92
3v9f_A	781	Two-component system sensor histidine kinase/RESP	83.73
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	83.68
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	83.66
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	83.66
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	83.65
3jrp_A	379	Fusion protein of protein transport protein SEC13	83.36
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	83.2
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	80.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	80.32

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.88  E-value=2.1e-20  Score=170.95  Aligned_cols=262  Identities=16%  Similarity=0.234  Sum_probs=185.0

Q ss_pred             CEEEEEecCC-CCeeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC---CceEEEEeCcccceeeccCCCCC
Q 015502           93 PWYFMFTSSD-EPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS---RSELYVCNPISKSWKKLEEPPGL  168 (405)
Q Consensus        93 p~l~~~~~~~-~~~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~---~~~~~v~NP~T~~~~~lP~~~~~  168 (405)
                      ..++++.... ......||+.+++|..++....++..+.++..+|.|++.++..   ...++++||.|++|..++++|..
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4555554433 3467899999999998875445555566667788888887632   36799999999999999988765


Q ss_pred             CCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEe
Q 015502          169 KFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYA  248 (405)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~  248 (405)
                      +.. +.  +...+.     +|+++|+.....   .....+++||..+++|+... + ++..+..+.++.++|+||++++.
T Consensus        92 r~~-~~--~~~~~~-----~iyv~GG~~~~~---~~~~~~~~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~  158 (306)
T 3ii7_A           92 RDS-LA--ACAAEG-----KIYTSGGSEVGN---SALYLFECYDTRTESWHTKP-S-MLTQRCSHGMVEANGLIYVCGGS  158 (306)
T ss_dssp             CBS-CE--EEEETT-----EEEEECCBBTTB---SCCCCEEEEETTTTEEEEEC-C-CSSCCBSCEEEEETTEEEEECCE
T ss_pred             ccc-ee--EEEECC-----EEEEECCCCCCC---cEeeeEEEEeCCCCceEeCC-C-CcCCcceeEEEEECCEEEEECCC
Confidence            522 22  222322     788888753111   12357999999999999874 3 33345666778899999999975


Q ss_pred             cCCCC-CCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEE
Q 015502          249 TGGGA-PENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQE  327 (405)
Q Consensus       249 ~~~~~-~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~  327 (405)
                      .+... ......+.+||+.+++|+.+     .++|..+....++..+|+||++++....   .....+.+|+++.++|+.
T Consensus       159 ~~~~~~~~~~~~~~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~i~v~GG~~~~---~~~~~~~~yd~~~~~W~~  230 (306)
T 3ii7_A          159 LGNNVSGRVLNSCEVYDPATETWTEL-----CPMIEARKNHGLVFVKDKIFAVGGQNGL---GGLDNVEYYDIKLNEWKM  230 (306)
T ss_dssp             ESCTTTCEECCCEEEEETTTTEEEEE-----CCCSSCCBSCEEEEETTEEEEECCEETT---EEBCCEEEEETTTTEEEE
T ss_pred             CCCCCcccccceEEEeCCCCCeEEEC-----CCccchhhcceEEEECCEEEEEeCCCCC---CCCceEEEeeCCCCcEEE
Confidence            42110 01146799999999999853     4566666667788899999999986432   124568888888899999


Q ss_pred             EeccChhHHhccCCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCcEEEccCCCC
Q 015502          328 VARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       328 v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      +..+|....        ..++...++.||+...     ....+.+||+++++|+.++.+|.
T Consensus       231 ~~~~p~~r~--------~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~  283 (306)
T 3ii7_A          231 VSPMPWKGV--------TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRA  283 (306)
T ss_dssp             CCCCSCCBS--------CCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEEC
T ss_pred             CCCCCCCcc--------ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCccc
Confidence            988875322        1233334778888753     23689999999999999987764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.86  E-value=9.3e-20  Score=166.80  Aligned_cols=247  Identities=15%  Similarity=0.181  Sum_probs=177.2

Q ss_pred             eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCC----C----CceEEEEeCcccceeeccCCCCCCCCcccee
Q 015502          105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDND----S----RSELYVCNPISKSWKKLEEPPGLKFSDYSAL  176 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~----~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~  176 (405)
                      ....||+..++|..++....++..+.++..+|.|++.++.    .    ...++++||.|++|..++++|..+.. +.  
T Consensus        40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~--  116 (308)
T 1zgk_A           40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-IG--  116 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-CE--
T ss_pred             eEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc-cE--
Confidence            5678999999999986444444455566678888888763    1    25689999999999999988765522 22  


Q ss_pred             EEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCC
Q 015502          177 SLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPEN  256 (405)
Q Consensus       177 ~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~  256 (405)
                      +...+.     +|+++|+....    .....+++||..+++|+... + ++..+..+.++.++++||++++..+   ...
T Consensus       117 ~~~~~~-----~iyv~GG~~~~----~~~~~~~~yd~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~  182 (308)
T 1zgk_A          117 VGVIDG-----HIYAVGGSHGC----IHHNSVERYEPERDEWHLVA-P-MLTRRIGVGVAVLNRLLYAVGGFDG---TNR  182 (308)
T ss_dssp             EEEETT-----EEEEECCEETT----EECCCEEEEETTTTEEEECC-C-CSSCCBSCEEEEETTEEEEECCBCS---SCB
T ss_pred             EEEECC-----EEEEEcCCCCC----cccccEEEECCCCCeEeECC-C-CCccccceEEEEECCEEEEEeCCCC---CCc
Confidence            222222     78888875321    11357899999999999875 3 3334556677888999999986542   222


Q ss_pred             ccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHH
Q 015502          257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFF  336 (405)
Q Consensus       257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~  336 (405)
                      ...+..||+.+++|+.+     .++|..+....++..+|+||++++....   .....+.+|+++.++|+++..+|....
T Consensus       183 ~~~~~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~~r~  254 (308)
T 1zgk_A          183 LNSAECYYPERNEWRMI-----TAMNTIRSGAGVCVLHNCIYAAGGYDGQ---DQLNSVERYDVETETWTFVAPMKHRRS  254 (308)
T ss_dssp             CCCEEEEETTTTEEEEC-----CCCSSCCBSCEEEEETTEEEEECCBCSS---SBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CceEEEEeCCCCeEeeC-----CCCCCccccceEEEECCEEEEEeCCCCC---CccceEEEEeCCCCcEEECCCCCCCcc
Confidence            46799999999999853     4556656666788889999999986432   124668888888899999988875322


Q ss_pred             hccCCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCcEEEccCCCCC
Q 015502          337 QGFGEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQWRWSHKCPVT  384 (405)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~w~~l~~~p~~  384 (405)
                              ..++...++.||+...     ....+.+||+++++|+.++.+|..
T Consensus       255 --------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  299 (308)
T 1zgk_A          255 --------ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSG  299 (308)
T ss_dssp             --------SCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC
T ss_pred             --------ceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCC
Confidence                    1223334678888653     246899999999999999888753

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.86  E-value=1.1e-19  Score=166.99  Aligned_cols=251  Identities=11%  Similarity=0.161  Sum_probs=175.1

Q ss_pred             CeeEEecCCCCeeeeccCCC-CCCCCeEEEecCceEEEEeCC-----C-----CceEEEEeCcccceeeccCCCCCCCCc
Q 015502          104 PIGYAYDPILRKWYGIELPC-IETSNWFIASSYGLVCFMDND-----S-----RSELYVCNPISKSWKKLEEPPGLKFSD  172 (405)
Q Consensus       104 ~~~~~~d~~~~~w~~~~~p~-~~~~~~~~~s~~Gll~~~~~~-----~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~  172 (405)
                      .....||+..++|...++|. .++..+.++..+|.|++.++.     .     ...++++||.|++|..++++|.++.. 
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-
Confidence            35789999999998765653 344555666778888887652     1     13489999999999999988855422 


Q ss_pred             cceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCC
Q 015502          173 YSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGG  252 (405)
Q Consensus       173 ~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~  252 (405)
                      +.  +...+.     +|+++|+...... ......+++||..+++|+... + ++..+..+.++.++++||++++..  .
T Consensus        92 ~~--~~~~~~-----~lyv~GG~~~~~~-~~~~~~~~~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~--~  159 (315)
T 4asc_A           92 FG--LGEALN-----SIYVVGGREIKDG-ERCLDSVMCYDRLSFKWGESD-P-LPYVVYGHTVLSHMDLVYVIGGKG--S  159 (315)
T ss_dssp             CE--EEEETT-----EEEEECCEESSTT-CCBCCCEEEEETTTTEEEECC-C-CSSCCBSCEEEEETTEEEEECCBC--T
T ss_pred             ee--EEEECC-----EEEEEeCCcCCCC-CcccceEEEECCCCCcEeECC-C-CCCcccceeEEEECCEEEEEeCCC--C
Confidence            22  222222     7888887542111 112457999999999999875 3 334456677888999999999652  1


Q ss_pred             CCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015502          253 APENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP  332 (405)
Q Consensus       253 ~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~  332 (405)
                      .......+..||+.+++|+.     ..++|..+....++..+|+||++++....   .....+.+|+++.++|+.+..+|
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~-----~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~yd~~~~~W~~~~~~p  231 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKE-----LAPMQTARSLFGATVHDGRIIVAAGVTDT---GLTSSAEVYSITDNKWAPFEAFP  231 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEE-----CCCCSSCCBSCEEEEETTEEEEEEEECSS---SEEEEEEEEETTTTEEEEECCCS
T ss_pred             CCcccceEEEEeCCCCeEEE-----CCCCCCchhceEEEEECCEEEEEeccCCC---CccceEEEEECCCCeEEECCCCC
Confidence            22334689999999999985     34567666667788899999999986432   12456777777789999998887


Q ss_pred             hhHHhccCCCCceeEEeeCCCEEEEEeCC--------------CCeEEEEECCCCcEEEccCCCC
Q 015502          333 HKFFQGFGEFDDVFASSGTDDLIYIQSYG--------------APSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      .....        .++...++.||+....              ...+.+||+++++|+.+.+.|.
T Consensus       232 ~~r~~--------~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~r  288 (315)
T 4asc_A          232 QERSS--------LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIA  288 (315)
T ss_dssp             SCCBS--------CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCSS
T ss_pred             Ccccc--------eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCCc
Confidence            54221        1233346677775421              1468899999999999966654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.86  E-value=1.6e-19  Score=166.04  Aligned_cols=245  Identities=18%  Similarity=0.254  Sum_probs=172.0

Q ss_pred             eeEEecCCCCeeeeccCCC-CCCCCeEEEecCceEEEEeCCC----------CceEEEEeCcccceeeccCCCCCCCCcc
Q 015502          105 IGYAYDPILRKWYGIELPC-IETSNWFIASSYGLVCFMDNDS----------RSELYVCNPISKSWKKLEEPPGLKFSDY  173 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~-~~~~~~~~~s~~Gll~~~~~~~----------~~~~~v~NP~T~~~~~lP~~~~~~~~~~  173 (405)
                      ....||+..++|...++|. .++..+.++..+|.|++.++..          ...++++||.|++|..++++|..+. .+
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC-LF  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC-SC
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc-cc
Confidence            4789999999999866554 4455556677788888887621          1238999999999999998886552 22


Q ss_pred             ceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCC
Q 015502          174 SALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGA  253 (405)
Q Consensus       174 ~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~  253 (405)
                      .  +...+.     +|+++|+......  .....+++||..+++|+... ++ +..+..+.++.++|+||++++...  .
T Consensus       104 ~--~~~~~~-----~iyv~GG~~~~~~--~~~~~~~~yd~~~~~W~~~~-~~-p~~r~~~~~~~~~~~iyv~GG~~~--~  170 (318)
T 2woz_A          104 G--LGEVDD-----KIYVVAGKDLQTE--ASLDSVLCYDPVAAKWSEVK-NL-PIKVYGHNVISHNGMIYCLGGKTD--D  170 (318)
T ss_dssp             E--EEEETT-----EEEEEEEEBTTTC--CEEEEEEEEETTTTEEEEEC-CC-SSCEESCEEEEETTEEEEECCEES--S
T ss_pred             c--eEEECC-----EEEEEcCccCCCC--cccceEEEEeCCCCCEeECC-CC-CCcccccEEEEECCEEEEEcCCCC--C
Confidence            2  222222     7888887542111  12457999999999999874 32 334556677889999999986531  1


Q ss_pred             CCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccCh
Q 015502          254 PENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPH  333 (405)
Q Consensus       254 ~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~  333 (405)
                      ......+..||+.+++|+.+     .++|..+....++..+|+||++++....   .....+++|+++.++|+++..+|.
T Consensus       171 ~~~~~~~~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~yd~~~~~W~~~~~~p~  242 (318)
T 2woz_A          171 KKCTNRVFIYNPKKGDWKDL-----APMKTPRSMFGVAIHKGKIVIAGGVTED---GLSASVEAFDLKTNKWEVMTEFPQ  242 (318)
T ss_dssp             SCBCCCEEEEETTTTEEEEE-----CCCSSCCBSCEEEEETTEEEEEEEEETT---EEEEEEEEEETTTCCEEECCCCSS
T ss_pred             CCccceEEEEcCCCCEEEEC-----CCCCCCcccceEEEECCEEEEEcCcCCC---CccceEEEEECCCCeEEECCCCCC
Confidence            22345799999999999853     4566666666788899999999986432   124567777777899999988875


Q ss_pred             hHHhccCCCCceeEEeeCCCEEEEEeC--------------CCCeEEEEECCCCcEEEcc
Q 015502          334 KFFQGFGEFDDVFASSGTDDLIYIQSY--------------GAPSLLVYDMNLKQWRWSH  379 (405)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------~~~~~~~Yd~~~~~w~~l~  379 (405)
                      ....        .++...++.||+...              ....+.+||+++++|+.+.
T Consensus       243 ~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  294 (318)
T 2woz_A          243 ERSS--------ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML  294 (318)
T ss_dssp             CCBS--------CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEE
T ss_pred             cccc--------eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhc
Confidence            3221        123334667777642              1357999999999999993

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.85  E-value=2.6e-19  Score=163.35  Aligned_cols=248  Identities=13%  Similarity=0.139  Sum_probs=175.1

Q ss_pred             eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC----CceEEEEeCcccceeeccCCCCCCCCccceeEEEE
Q 015502          105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV  180 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~  180 (405)
                      ....||+..++|..++....++..+.+...+|.|++.++..    ...++++||.|++|..++++|..+.. +.  +...
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~--~~~~  107 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LG--AAVL  107 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CE--EEEE
T ss_pred             cEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eE--EEEE
Confidence            46789999999998864334444455666788888887632    25799999999999999988765522 22  2222


Q ss_pred             eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEE
Q 015502          181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGL  260 (405)
Q Consensus       181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i  260 (405)
                      +.     +|+++|+....    .....+++||..+++|+... + ++..+..+.++.++|+||++++..+. .......+
T Consensus       108 ~~-----~iyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~  175 (302)
T 2xn4_A          108 NG-----LLYAVGGFDGS----TGLSSVEAYNIKSNEWFHVA-P-MNTRRSSVGVGVVGGLLYAVGGYDVA-SRQCLSTV  175 (302)
T ss_dssp             TT-----EEEEEEEECSS----CEEEEEEEEETTTTEEEEEC-C-CSSCCBSCEEEEETTEEEEECCEETT-TTEECCCE
T ss_pred             CC-----EEEEEcCCCCC----ccCceEEEEeCCCCeEeecC-C-CCCcccCceEEEECCEEEEEeCCCCC-CCccccEE
Confidence            22     78888875321    11357999999999999874 3 33345566778899999999865421 01123579


Q ss_pred             EEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccC
Q 015502          261 ISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFG  340 (405)
Q Consensus       261 ~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~  340 (405)
                      ..||+.+++|+.+     .++|..+....++..+|+||++++....   .....+.+|+++.++|+.+..+|....    
T Consensus       176 ~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~yd~~~~~W~~~~~~~~~r~----  243 (302)
T 2xn4_A          176 ECYNATTNEWTYI-----AEMSTRRSGAGVGVLNNLLYAVGGHDGP---LVRKSVEVYDPTTNAWRQVADMNMCRR----  243 (302)
T ss_dssp             EEEETTTTEEEEE-----CCCSSCCBSCEEEEETTEEEEECCBSSS---SBCCCEEEEETTTTEEEEECCCSSCCB----
T ss_pred             EEEeCCCCcEEEC-----CCCccccccccEEEECCEEEEECCCCCC---cccceEEEEeCCCCCEeeCCCCCCccc----
Confidence            9999999999853     4566666666788899999999986432   124568888888899999998875321    


Q ss_pred             CCCceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCcEEEcc-CCCC
Q 015502          341 EFDDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQWRWSH-KCPV  383 (405)
Q Consensus       341 ~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~w~~l~-~~p~  383 (405)
                          ..++...++.||+....     ...+.+||+++++|+.++ .+|.
T Consensus       244 ----~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~  288 (302)
T 2xn4_A          244 ----NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMST  288 (302)
T ss_dssp             ----SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSS
T ss_pred             ----cCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCc
Confidence                11233347788887531     357999999999999997 5554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.85  E-value=1.9e-19  Score=164.04  Aligned_cols=246  Identities=13%  Similarity=0.177  Sum_probs=176.1

Q ss_pred             eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC----CceEEEEeCcccc---eeeccCCCCCCCCccceeE
Q 015502          105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS----RSELYVCNPISKS---WKKLEEPPGLKFSDYSALS  177 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~----~~~~~v~NP~T~~---~~~lP~~~~~~~~~~~~~~  177 (405)
                      ....||+..++|..++....++..+.....+|.|++.++..    ...++++||.|++   |..++++|..+.. +.  +
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~--~  108 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AG--A  108 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CE--E
T ss_pred             EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-ee--E
Confidence            56789999999998864334444556666788888876632    3579999999999   9999988765522 22  2


Q ss_pred             EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCc
Q 015502          178 LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENR  257 (405)
Q Consensus       178 ~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~  257 (405)
                      ...+.     +|+++|+.... .   ....+++||..+++|+... + ++..+..+..+.++|+||++++..+   ....
T Consensus       109 ~~~~~-----~lyv~GG~~~~-~---~~~~~~~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~  174 (301)
T 2vpj_A          109 TTLGD-----MIYVSGGFDGS-R---RHTSMERYDPNIDQWSMLG-D-MQTAREGAGLVVASGVIYCLGGYDG---LNIL  174 (301)
T ss_dssp             EEETT-----EEEEECCBCSS-C---BCCEEEEEETTTTEEEEEE-E-CSSCCBSCEEEEETTEEEEECCBCS---SCBC
T ss_pred             EEECC-----EEEEEcccCCC-c---ccceEEEEcCCCCeEEECC-C-CCCCcccceEEEECCEEEEECCCCC---Cccc
Confidence            22222     78888875421 1   1357999999999999874 3 2334556677888999999986532   2234


Q ss_pred             cEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHh
Q 015502          258 HGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQ  337 (405)
Q Consensus       258 ~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~  337 (405)
                      ..+.+||+.+++|+.+     .++|..+....++..+|+||++++....   .....+.+|+++.++|+++..+|.... 
T Consensus       175 ~~~~~~d~~~~~W~~~-----~~~p~~r~~~~~~~~~~~i~v~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~~r~-  245 (301)
T 2vpj_A          175 NSVEKYDPHTGHWTNV-----TPMATKRSGAGVALLNDHIYVVGGFDGT---AHLSSVEAYNIRTDSWTTVTSMTTPRC-  245 (301)
T ss_dssp             CCEEEEETTTTEEEEE-----CCCSSCCBSCEEEEETTEEEEECCBCSS---SBCCCEEEEETTTTEEEEECCCSSCCB-
T ss_pred             ceEEEEeCCCCcEEeC-----CCCCcccccceEEEECCEEEEEeCCCCC---cccceEEEEeCCCCcEEECCCCCCccc-
Confidence            6799999999999853     4566666666788899999999986432   124568888888899999988875322 


Q ss_pred             ccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCcEEEccCCCC
Q 015502          338 GFGEFDDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       338 ~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                             ..++...++.||+....     ...+.+||+++++|+.++.+|.
T Consensus       246 -------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~  289 (301)
T 2vpj_A          246 -------YVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGT  289 (301)
T ss_dssp             -------SCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEE
T ss_pred             -------ceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCc
Confidence                   12233347778887531     1578999999999999988775

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.76  E-value=4.1e-17  Score=149.16  Aligned_cols=222  Identities=15%  Similarity=0.150  Sum_probs=152.9

Q ss_pred             ecCceEEEEeC---CCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015502          133 SSYGLVCFMDN---DSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH  209 (405)
Q Consensus       133 s~~Gll~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~  209 (405)
                      ..++.|++.++   .....++++||.+++|..++.+|..+.. +.  +...+.     +|+++|+.............++
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~--~~~~~~-----~lyv~GG~~~~~~~~~~~~~~~   93 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LA--GCVVGG-----LLYAVGGRNNSPDGNTDSSALD   93 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CE--EEEETT-----EEEEECCEEEETTEEEECCCEE
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ce--EEEECC-----EEEEECCCcCCCCCCeecceEE
Confidence            33455555544   2236799999999999999988765532 22  222222     7888887521001111234689


Q ss_pred             EEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015502          210 IYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR  289 (405)
Q Consensus       210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~  289 (405)
                      +||..+++|+... + ++..+..+..+.++|+||++++..+   ......+..||+.+++|+.+     .++|..+....
T Consensus        94 ~~d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~yd~~~~~W~~~-----~~~p~~r~~~~  163 (308)
T 1zgk_A           94 CYNPMTNQWSPCA-P-MSVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDEWHLV-----APMLTRRIGVG  163 (308)
T ss_dssp             EEETTTTEEEECC-C-CSSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTEEEEC-----CCCSSCCBSCE
T ss_pred             EECCCCCeEeECC-C-CCcCccccEEEEECCEEEEEcCCCC---CcccccEEEECCCCCeEeEC-----CCCCccccceE
Confidence            9999999999875 3 3334556677888999999986542   12235799999999999853     45666666667


Q ss_pred             eEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCe
Q 015502          290 LMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APS  364 (405)
Q Consensus       290 l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~  364 (405)
                      ++..+|+||++++.....   ....+.+|+++.++|+.+..+|....        ..++...++.||+....     ...
T Consensus       164 ~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r~--------~~~~~~~~~~iyv~GG~~~~~~~~~  232 (308)
T 1zgk_A          164 VAVLNRLLYAVGGFDGTN---RLNSAECYYPERNEWRMITAMNTIRS--------GAGVCVLHNCIYAAGGYDGQDQLNS  232 (308)
T ss_dssp             EEEETTEEEEECCBCSSC---BCCCEEEEETTTTEEEECCCCSSCCB--------SCEEEEETTEEEEECCBCSSSBCCC
T ss_pred             EEEECCEEEEEeCCCCCC---cCceEEEEeCCCCeEeeCCCCCCccc--------cceEEEECCEEEEEeCCCCCCccce
Confidence            788899999999864321   24668888888899999988875321        12233347788887531     368


Q ss_pred             EEEEECCCCcEEEccCCCC
Q 015502          365 LLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       365 ~~~Yd~~~~~w~~l~~~p~  383 (405)
                      +.+||+++++|+.++.+|.
T Consensus       233 v~~yd~~~~~W~~~~~~p~  251 (308)
T 1zgk_A          233 VERYDVETETWTFVAPMKH  251 (308)
T ss_dssp             EEEEETTTTEEEECCCCSS
T ss_pred             EEEEeCCCCcEEECCCCCC
Confidence            9999999999999987774

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.76  E-value=7.5e-17  Score=150.56  Aligned_cols=271  Identities=11%  Similarity=0.074  Sum_probs=166.9

Q ss_pred             CEEEEEecCCCCeeEEecCC--CCeeeeccC-CCCCCCCeEEEecCceEEEEeCC-C--------CceEEEEeCccccee
Q 015502           93 PWYFMFTSSDEPIGYAYDPI--LRKWYGIEL-PCIETSNWFIASSYGLVCFMDND-S--------RSELYVCNPISKSWK  160 (405)
Q Consensus        93 p~l~~~~~~~~~~~~~~d~~--~~~w~~~~~-p~~~~~~~~~~s~~Gll~~~~~~-~--------~~~~~v~NP~T~~~~  160 (405)
                      ..++++........+.||+.  +++|..++. |..++..+.++..+|.|++.++. .        ...++++||.|++|.
T Consensus        20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~   99 (357)
T 2uvk_A           20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV   99 (357)
T ss_dssp             TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred             CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence            44555554334467889987  489998863 42555566677778999888764 1        257999999999999


Q ss_pred             eccCCC-CCCCCccceeEEEEeCCCCcEEEEEEeeeccCCC------------------------------ccccceEEE
Q 015502          161 KLEEPP-GLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGN------------------------------FFQWELSIH  209 (405)
Q Consensus       161 ~lP~~~-~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~------------------------------~~~~~~~~~  209 (405)
                      .+++++ ..+   ....+...+.     +|+++|+......                              .......++
T Consensus       100 ~~~~~~p~~r---~~~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  171 (357)
T 2uvk_A          100 KLMSHAPMGM---AGHVTFVHNG-----KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL  171 (357)
T ss_dssp             ECSCCCSSCC---SSEEEEEETT-----EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred             ECCCCCCccc---ccceEEEECC-----EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence            999876 333   2222222333     7888887431100                              000125899


Q ss_pred             EEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEEC--CCCcchhhhcccccccCCcccc
Q 015502          210 IYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNL--SSRSSHALLIKSFIPVPCALTC  287 (405)
Q Consensus       210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~--~~~~w~~~~~~~~~~~p~~~~~  287 (405)
                      +||..+++|+... +++...+..+..+.++++||++++..+  .......+..||+  .+++|+.+.   ..+.|.....
T Consensus       172 ~yd~~~~~W~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~~d~d~~~~~W~~~~---~~~~~~~~~~  245 (357)
T 2uvk_A          172 SFDPSTQQWSYAG-ESPWYGTAGAAVVNKGDKTWLINGEAK--PGLRTDAVFELDFTGNNLKWNKLA---PVSSPDGVAG  245 (357)
T ss_dssp             EEETTTTEEEEEE-ECSSCCCBSCEEEEETTEEEEECCEEE--TTEECCCEEEEECC---CEEEECC---CSSTTTCCBS
T ss_pred             EEeCCCCcEEECC-CCCCCCcccccEEEECCEEEEEeeecC--CCcccCceEEEEecCCCCcEEecC---CCCCCccccc
Confidence            9999999999874 333333344677888999999986431  1112346888876  999998531   1222333334


Q ss_pred             CceEEeCCcEEEEEcccccc--------------ccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCC
Q 015502          288 GRLMNLKEKLVMVGGIGKQD--------------RPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDD  353 (405)
Q Consensus       288 ~~l~~~~G~L~~v~~~~~~~--------------~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~  353 (405)
                      ..++..+|+||++++.....              .......+++|+++.++|+++..+|.....        .++...++
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~  317 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--------GVSLPWNN  317 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--------SEEEEETT
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--------ceeEEeCC
Confidence            45788999999999853210              011124678888888999999988854221        12333567


Q ss_pred             EEEEEeCC------CCeEEEEECCCCcEEEccCCCCCC
Q 015502          354 LIYIQSYG------APSLLVYDMNLKQWRWSHKCPVTK  385 (405)
Q Consensus       354 ~i~~~~~~------~~~~~~Yd~~~~~w~~l~~~p~~~  385 (405)
                      .||+....      ...+++|++++++|.++.+.|-+|
T Consensus       318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~  355 (357)
T 2uvk_A          318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHHH  355 (357)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC------
T ss_pred             EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccccc
Confidence            77776431      257889999999999998877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.75  E-value=1.3e-16  Score=145.72  Aligned_cols=218  Identities=13%  Similarity=0.123  Sum_probs=152.4

Q ss_pred             ceEEEEeCC-CCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015502          136 GLVCFMDND-SRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD  214 (405)
Q Consensus       136 Gll~~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~  214 (405)
                      +.|++.++. ....++++||.+++|..++++|..+.. +.  +...+.     +|+++|+..  .   .....+++||..
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~--~~~~~~-----~lyv~GG~~--~---~~~~~~~~~d~~   78 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AA--CVFWDN-----VVYILGGSQ--L---FPIKRMDCYNVV   78 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CE--EEEETT-----EEEEECCBS--S---SBCCEEEEEETT
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eE--EEEECC-----EEEEEeCCC--C---CCcceEEEEeCC
Confidence            455555442 247899999999999999988865522 22  222322     688888754  1   124579999999


Q ss_pred             CCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeC
Q 015502          215 TMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK  294 (405)
Q Consensus       215 ~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~  294 (405)
                      +++|+... + ++..+..+.++.++++||++++...  .......+..||+.+++|+.     ..++|..+....++..+
T Consensus        79 ~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~~d~~~~~W~~-----~~~~p~~r~~~~~~~~~  149 (306)
T 3ii7_A           79 KDSWYSKL-G-PPTPRDSLAACAAEGKIYTSGGSEV--GNSALYLFECYDTRTESWHT-----KPSMLTQRCSHGMVEAN  149 (306)
T ss_dssp             TTEEEEEE-C-CSSCCBSCEEEEETTEEEEECCBBT--TBSCCCCEEEEETTTTEEEE-----ECCCSSCCBSCEEEEET
T ss_pred             CCeEEECC-C-CCccccceeEEEECCEEEEECCCCC--CCcEeeeEEEEeCCCCceEe-----CCCCcCCcceeEEEEEC
Confidence            99998864 3 3344556778888999999986531  12334579999999999985     34566666666788899


Q ss_pred             CcEEEEEcccccccc-CccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEE
Q 015502          295 EKLVMVGGIGKQDRP-DIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLLVY  368 (405)
Q Consensus       295 G~L~~v~~~~~~~~~-~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Y  368 (405)
                      |+||++++....... .....+.+|+++.++|+++..+|.....        .++...++.||+....     ...+.+|
T Consensus       150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~~~~y  221 (306)
T 3ii7_A          150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN--------HGLVFVKDKIFAVGGQNGLGGLDNVEYY  221 (306)
T ss_dssp             TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEECCEETTEEBCCEEEE
T ss_pred             CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc--------ceEEEECCEEEEEeCCCCCCCCceEEEe
Confidence            999999986432110 0146688888888999999888753221        1233347778886421     3579999


Q ss_pred             ECCCCcEEEccCCCC
Q 015502          369 DMNLKQWRWSHKCPV  383 (405)
Q Consensus       369 d~~~~~w~~l~~~p~  383 (405)
                      |+++++|+.++++|.
T Consensus       222 d~~~~~W~~~~~~p~  236 (306)
T 3ii7_A          222 DIKLNEWKMVSPMPW  236 (306)
T ss_dssp             ETTTTEEEECCCCSC
T ss_pred             eCCCCcEEECCCCCC
Confidence            999999999988775

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.75  E-value=2.1e-16  Score=143.88  Aligned_cols=217  Identities=13%  Similarity=0.145  Sum_probs=153.0

Q ss_pred             cCceEEEEeC-CC----CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEE
Q 015502          134 SYGLVCFMDN-DS----RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSI  208 (405)
Q Consensus       134 ~~Gll~~~~~-~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~  208 (405)
                      .+|.|++.++ ..    ...++++||.+++|..++.+|..+. .+.  +...+.     +|+++|+... .   .....+
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~--~~~~~~-----~l~v~GG~~~-~---~~~~~~   80 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR-YVA--SVSLHD-----RIYVIGGYDG-R---SRLSSV   80 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCB-SCE--EEEETT-----EEEEECCBCS-S---CBCCCE
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhc-ccc--EEEECC-----EEEEEcCCCC-C---ccCceE
Confidence            4555666555 21    3578999999999999998876442 222  222222     7888887531 1   113578


Q ss_pred             EEEeCCCCC---cccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc
Q 015502          209 HIYDSDTMM---WVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL  285 (405)
Q Consensus       209 ~vy~s~~~~---W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~  285 (405)
                      ++||..+++   |+... + ++..+..+.++.+++++|++++..+   ......+..||+.+++|+.+     .++|..+
T Consensus        81 ~~~d~~~~~~~~W~~~~-~-~p~~r~~~~~~~~~~~lyv~GG~~~---~~~~~~~~~~d~~~~~W~~~-----~~~p~~r  150 (301)
T 2vpj_A           81 ECLDYTADEDGVWYSVA-P-MNVRRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQWSML-----GDMQTAR  150 (301)
T ss_dssp             EEEETTCCTTCCCEEEC-C-CSSCCBSCEEEEETTEEEEECCBCS---SCBCCEEEEEETTTTEEEEE-----EECSSCC
T ss_pred             EEEECCCCCCCeeEECC-C-CCCCccceeEEEECCEEEEEcccCC---CcccceEEEEcCCCCeEEEC-----CCCCCCc
Confidence            999999999   99874 3 3334556678888999999986542   22346899999999999853     4556656


Q ss_pred             ccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC----
Q 015502          286 TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG----  361 (405)
Q Consensus       286 ~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----  361 (405)
                      ....++..+|+||++++....   .....+.+|+++.++|+++..+|....        ..++...++.||+....    
T Consensus       151 ~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~d~~~~~W~~~~~~p~~r~--------~~~~~~~~~~i~v~GG~~~~~  219 (301)
T 2vpj_A          151 EGAGLVVASGVIYCLGGYDGL---NILNSVEKYDPHTGHWTNVTPMATKRS--------GAGVALLNDHIYVVGGFDGTA  219 (301)
T ss_dssp             BSCEEEEETTEEEEECCBCSS---CBCCCEEEEETTTTEEEEECCCSSCCB--------SCEEEEETTEEEEECCBCSSS
T ss_pred             ccceEEEECCEEEEECCCCCC---cccceEEEEeCCCCcEEeCCCCCcccc--------cceEEEECCEEEEEeCCCCCc
Confidence            666778889999999986432   135668888888899999988875322        12333347788887531    


Q ss_pred             -CCeEEEEECCCCcEEEccCCCC
Q 015502          362 -APSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       362 -~~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                       ...+.+||+++++|+.++.+|.
T Consensus       220 ~~~~v~~yd~~~~~W~~~~~~p~  242 (301)
T 2vpj_A          220 HLSSVEAYNIRTDSWTTVTSMTT  242 (301)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSS
T ss_pred             ccceEEEEeCCCCcEEECCCCCC
Confidence             4589999999999999987774

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.74  E-value=2.7e-16  Score=143.19  Aligned_cols=218  Identities=16%  Similarity=0.210  Sum_probs=152.0

Q ss_pred             CceEEEEeCC---CCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015502          135 YGLVCFMDND---SRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY  211 (405)
Q Consensus       135 ~Gll~~~~~~---~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy  211 (405)
                      ++.|++.++.   ....++++||.+++|..++.+|..+. .+.  +...+.     +|+++|+.... .   ....+++|
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~--~~~~~~-----~lyv~GG~~~~-~---~~~~~~~~   82 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC-RAG--MVYMAG-----LVFAVGGFNGS-L---RVRTVDSY   82 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCE--EEEETT-----EEEEESCBCSS-S---BCCCEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc-cce--EEEECC-----EEEEEeCcCCC-c---cccceEEE
Confidence            4445555442   13578999999999999998876552 222  222222     68888875321 1   13578999


Q ss_pred             eCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE
Q 015502          212 DSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM  291 (405)
Q Consensus       212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~  291 (405)
                      |..+++|+... + ++..+..+.++.++|+||++++..+   ......+..||+.+++|+.+     .++|..+....++
T Consensus        83 d~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~d~~~~~W~~~-----~~~p~~r~~~~~~  152 (302)
T 2xn4_A           83 DPVKDQWTSVA-N-MRDRRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNEWFHV-----APMNTRRSSVGVG  152 (302)
T ss_dssp             ETTTTEEEEEC-C-CSSCCBSCEEEEETTEEEEEEEECS---SCEEEEEEEEETTTTEEEEE-----CCCSSCCBSCEEE
T ss_pred             CCCCCceeeCC-C-CCccccceEEEEECCEEEEEcCCCC---CccCceEEEEeCCCCeEeec-----CCCCCcccCceEE
Confidence            99999999875 3 3344556778888999999997642   22345799999999999853     4566666666778


Q ss_pred             EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEE
Q 015502          292 NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLL  366 (405)
Q Consensus       292 ~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~  366 (405)
                      ..+|+||++++...... .....+.+|+++.++|+++..+|....        ..++...++.||+....     ...+.
T Consensus       153 ~~~~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~--------~~~~~~~~~~iyv~GG~~~~~~~~~~~  223 (302)
T 2xn4_A          153 VVGGLLYAVGGYDVASR-QCLSTVECYNATTNEWTYIAEMSTRRS--------GAGVGVLNNLLYAVGGHDGPLVRKSVE  223 (302)
T ss_dssp             EETTEEEEECCEETTTT-EECCCEEEEETTTTEEEEECCCSSCCB--------SCEEEEETTEEEEECCBSSSSBCCCEE
T ss_pred             EECCEEEEEeCCCCCCC-ccccEEEEEeCCCCcEEECCCCccccc--------cccEEEECCEEEEECCCCCCcccceEE
Confidence            89999999998643210 124568888888899999988875322        12333447788887531     35899


Q ss_pred             EEECCCCcEEEccCCCC
Q 015502          367 VYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       367 ~Yd~~~~~w~~l~~~p~  383 (405)
                      +||+++++|+.++.+|.
T Consensus       224 ~yd~~~~~W~~~~~~~~  240 (302)
T 2xn4_A          224 VYDPTTNAWRQVADMNM  240 (302)
T ss_dssp             EEETTTTEEEEECCCSS
T ss_pred             EEeCCCCCEeeCCCCCC
Confidence            99999999999987774

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.73  E-value=1.1e-16  Score=149.40  Aligned_cols=235  Identities=16%  Similarity=0.088  Sum_probs=151.1

Q ss_pred             CCeEEEecCceEEEEeCCCCceEEEEeCc--ccceeeccCCC-CCCCCccceeEEEEeCCCCcEEEEEEeeecc-CCCcc
Q 015502          127 SNWFIASSYGLVCFMDNDSRSELYVCNPI--SKSWKKLEEPP-GLKFSDYSALSLSVDRVSHRYTVSIVKSKQV-TGNFF  202 (405)
Q Consensus       127 ~~~~~~s~~Gll~~~~~~~~~~~~v~NP~--T~~~~~lP~~~-~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~-~~~~~  202 (405)
                      .....+..+|.|++.++.....++++|+.  +++|..++++| .++ ..+.  +..++.     +|+++|+... .....
T Consensus        11 ~~~~~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R-~~~~--~~~~~~-----~lyv~GG~~~~~~~~~   82 (357)
T 2uvk_A           11 KSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR-DQAT--SAFIDG-----NLYVFGGIGKNSEGLT   82 (357)
T ss_dssp             CSCEEEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCC-BSCE--EEEETT-----EEEEECCEEECTTSCE
T ss_pred             cceEEEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcC-ccce--EEEECC-----EEEEEcCCCCCCCccc
Confidence            34455566899999887656789999998  49999999887 444 2222  222322     7898887621 11111


Q ss_pred             ccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCC------------------------------
Q 015502          203 QWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGG------------------------------  252 (405)
Q Consensus       203 ~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~------------------------------  252 (405)
                      .....+++||..+++|+.... +++..+..+.++.++|+||++++..+..                              
T Consensus        83 ~~~~~v~~yd~~~~~W~~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (357)
T 2uvk_A           83 QVFNDVHKYNPKTNSWVKLMS-HAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA  161 (357)
T ss_dssp             EECCCEEEEETTTTEEEECSC-CCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred             eeeccEEEEeCCCCcEEECCC-CCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence            224579999999999999753 3324455566677999999999642100                              


Q ss_pred             -CCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceEEeCCcEEEEEccccccccCccceEEEEEE--eCceeEEE
Q 015502          253 -APENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVL--NGKEWQEV  328 (405)
Q Consensus       253 -~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l--~~~~W~~v  328 (405)
                       .......+.+||+.+++|+.+     .++|..... ..++..+|+||++++.....  .....+.+|++  +..+|+++
T Consensus       162 ~~~~~~~~v~~yd~~~~~W~~~-----~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~~d~d~~~~~W~~~  234 (357)
T 2uvk_A          162 EDYFFNKFLLSFDPSTQQWSYA-----GESPWYGTAGAAVVNKGDKTWLINGEAKPG--LRTDAVFELDFTGNNLKWNKL  234 (357)
T ss_dssp             GGGCCCCEEEEEETTTTEEEEE-----EECSSCCCBSCEEEEETTEEEEECCEEETT--EECCCEEEEECC---CEEEEC
T ss_pred             cccCCcccEEEEeCCCCcEEEC-----CCCCCCCcccccEEEECCEEEEEeeecCCC--cccCceEEEEecCCCCcEEec
Confidence             001125899999999999853     455543333 56788999999999864221  12345666766  46899999


Q ss_pred             eccChhHHhccCCCCceeEEeeCCCEEEEEeCCC----------------------CeEEEEECCCCcEEEccCCCC
Q 015502          329 ARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA----------------------PSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       329 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      ..++.....      ...++...++.||+.....                      ..+.+||+++++|+.++.+|.
T Consensus       235 ~~~~~~~~~------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~  305 (357)
T 2uvk_A          235 APVSSPDGV------AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ  305 (357)
T ss_dssp             CCSSTTTCC------BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS
T ss_pred             CCCCCCccc------ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC
Confidence            888643211      1112344577888865310                      368899999999999988775

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.72  E-value=3.7e-16  Score=143.28  Aligned_cols=220  Identities=12%  Similarity=0.104  Sum_probs=146.2

Q ss_pred             eEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccC--CCccccceEEEEEeCC
Q 015502          137 LVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVT--GNFFQWELSIHIYDSD  214 (405)
Q Consensus       137 ll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~--~~~~~~~~~~~vy~s~  214 (405)
                      .|++.++   ..++++||.|++|.. +++|.+. ......+...+     -+|+++|+....  .........+++||..
T Consensus         6 ~l~~~GG---~~~~~yd~~~~~W~~-~~~~~p~-~r~~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~   75 (315)
T 4asc_A            6 LIFMISE---EGAVAYDPAANECYC-ASLSSQV-PKNHVSLVTKE-----NQVFVAGGLFYNEDNKEDPMSAYFLQFDHL   75 (315)
T ss_dssp             EEEEEET---TEEEEEETTTTEEEE-EECCCCS-CSSEEEEECTT-----CCEEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred             EEEEEcC---CceEEECCCCCeEec-CCCCCCC-CccceEEEEEC-----CEEEEEcCcccCCCCCccccccceEEecCC
Confidence            4455554   689999999999987 4443221 11111111111     167888874211  1111112348999999


Q ss_pred             CCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeC
Q 015502          215 TMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLK  294 (405)
Q Consensus       215 ~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~  294 (405)
                      +++|+... + ++..+..+..+.++++||++++............+..||+.+++|+.     ..++|..+....++..+
T Consensus        76 ~~~W~~~~-~-~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-----~~~~p~~r~~~~~~~~~  148 (315)
T 4asc_A           76 DSEWLGMP-P-LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-----SDPLPYVVYGHTVLSHM  148 (315)
T ss_dssp             TTEEEECC-C-BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-----CCCCSSCCBSCEEEEET
T ss_pred             CCeEEECC-C-CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-----CCCCCCcccceeEEEEC
Confidence            99998864 3 33445567788889999999875311113344679999999999985     34667666667788899


Q ss_pred             CcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEEE
Q 015502          295 EKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLLVYD  369 (405)
Q Consensus       295 G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd  369 (405)
                      |+||++++....  ......+.+|++..++|+++..+|.....        .++...++.||+....     ...+.+||
T Consensus       149 ~~iyv~GG~~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd  218 (315)
T 4asc_A          149 DLVYVIGGKGSD--RKCLNKMCVYDPKKFEWKELAPMQTARSL--------FGATVHDGRIIVAAGVTDTGLTSSAEVYS  218 (315)
T ss_dssp             TEEEEECCBCTT--SCBCCCEEEEETTTTEEEECCCCSSCCBS--------CEEEEETTEEEEEEEECSSSEEEEEEEEE
T ss_pred             CEEEEEeCCCCC--CcccceEEEEeCCCCeEEECCCCCCchhc--------eEEEEECCEEEEEeccCCCCccceEEEEE
Confidence            999999986322  22356688888888999999888753221        2233347788886531     24799999


Q ss_pred             CCCCcEEEccCCCC
Q 015502          370 MNLKQWRWSHKCPV  383 (405)
Q Consensus       370 ~~~~~w~~l~~~p~  383 (405)
                      +++++|+.++++|.
T Consensus       219 ~~~~~W~~~~~~p~  232 (315)
T 4asc_A          219 ITDNKWAPFEAFPQ  232 (315)
T ss_dssp             TTTTEEEEECCCSS
T ss_pred             CCCCeEEECCCCCC
Confidence            99999999988764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.68  E-value=1.6e-15  Score=139.23  Aligned_cols=202  Identities=14%  Similarity=0.201  Sum_probs=142.7

Q ss_pred             eEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCCC------CceEEEEeCcccceeeccCCCCCCCCccceeEEE
Q 015502          106 GYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDS------RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS  179 (405)
Q Consensus       106 ~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~~------~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~  179 (405)
                      ...||+..++|..++....++..+..+..+|.|++.++..      ...++++||.|++|..++++|..+.. +  .+..
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~--~~~~  156 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-H--NVIS  156 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-C--EEEE
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-c--EEEE
Confidence            5689999999998864444555666677788888876532      24699999999999999988755422 2  2222


Q ss_pred             EeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccE
Q 015502          180 VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHG  259 (405)
Q Consensus       180 ~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~  259 (405)
                      .+.     +|+++|+......   ....+++||..+++|+... + ++..+..+.++.++|+||++++..+   ......
T Consensus       157 ~~~-----~iyv~GG~~~~~~---~~~~~~~yd~~~~~W~~~~-~-~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~  223 (318)
T 2woz_A          157 HNG-----MIYCLGGKTDDKK---CTNRVFIYNPKKGDWKDLA-P-MKTPRSMFGVAIHKGKIVIAGGVTE---DGLSAS  223 (318)
T ss_dssp             ETT-----EEEEECCEESSSC---BCCCEEEEETTTTEEEEEC-C-CSSCCBSCEEEEETTEEEEEEEEET---TEEEEE
T ss_pred             ECC-----EEEEEcCCCCCCC---ccceEEEEcCCCCEEEECC-C-CCCCcccceEEEECCEEEEEcCcCC---CCccce
Confidence            332     7888887532221   1347999999999999874 3 3334556677889999999997642   112357


Q ss_pred             EEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccc------cCccceEEEEEEeCceeEEE
Q 015502          260 LISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDR------PDIIKGIGIWVLNGKEWQEV  328 (405)
Q Consensus       260 i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~------~~~~~~~~vw~l~~~~W~~v  328 (405)
                      +..||+.+++|+.+     .++|..+....++..+|+||++++......      ......+.+|++++++|+++
T Consensus       224 ~~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          224 VEAFDLKTNKWEVM-----TEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEEEETTTCCEEEC-----CCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EEEEECCCCeEEEC-----CCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            89999999999853     456666666678899999999998643210      01235577777778999998

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.61  E-value=6.2e-15  Score=148.70  Aligned_cols=252  Identities=14%  Similarity=0.076  Sum_probs=156.1

Q ss_pred             eEEecCCCCeeeecc-CCCCCCCCeEEEec-CceEEEEeCCCC----------ceEEEEeCcccceeeccCCCCCCCCcc
Q 015502          106 GYAYDPILRKWYGIE-LPCIETSNWFIASS-YGLVCFMDNDSR----------SELYVCNPISKSWKKLEEPPGLKFSDY  173 (405)
Q Consensus       106 ~~~~d~~~~~w~~~~-~p~~~~~~~~~~s~-~Gll~~~~~~~~----------~~~~v~NP~T~~~~~lP~~~~~~~~~~  173 (405)
                      ...||+..++|..+. +|.  ......... +|.|++.++...          ..+++|||.|++|..++.++..+....
T Consensus       168 ~~~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~  245 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC  245 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred             cccCCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence            346899999998753 443  223333333 888888764211          268999999999999988765443222


Q ss_pred             ceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE-CcEEEeeEEecCCC
Q 015502          174 SALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC-DGVLYFLIYATGGG  252 (405)
Q Consensus       174 ~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g~iy~l~~~~~~~  252 (405)
                      ..+++..+.     +|+++|+...        ..+++||..+++|.... + ++..+..+.++.+ +|+||++++..  .
T Consensus       246 ~~~~~~~~g-----~lyv~GG~~~--------~~v~~yd~~t~~W~~~~-~-~~~~R~~~s~~~~~dg~iyv~GG~~--~  308 (656)
T 1k3i_A          246 PGISMDGNG-----QIVVTGGNDA--------KKTSLYDSSSDSWIPGP-D-MQVARGYQSSATMSDGRVFTIGGSW--S  308 (656)
T ss_dssp             CEEEECTTS-----CEEEECSSST--------TCEEEEEGGGTEEEECC-C-CSSCCSSCEEEECTTSCEEEECCCC--C
T ss_pred             ccccCCCCC-----CEEEeCCCCC--------CceEEecCcCCceeECC-C-CCccccccceEEecCCeEEEEeCcc--c
Confidence            223332222     6888887431        26899999999999874 3 3444556677788 99999998632  1


Q ss_pred             CCCCccEEEEEECCCCcchhhhcccccccCCcc-----------------------------------------------
Q 015502          253 APENRHGLISFNLSSRSSHALLIKSFIPVPCAL-----------------------------------------------  285 (405)
Q Consensus       253 ~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~-----------------------------------------------  285 (405)
                      .......+..||+.+++|+.+-.....+++...                                               
T Consensus       309 ~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~  388 (656)
T 1k3i_A          309 GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR  388 (656)
T ss_dssp             SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC
T ss_pred             CCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc
Confidence            122345799999999999863100001111110                                               


Q ss_pred             ----------ccCceE---EeCCcEEEEEccccccccCcc---ceEEEEEEeCceeEEEe--ccChhHHhccCCCCceeE
Q 015502          286 ----------TCGRLM---NLKEKLVMVGGIGKQDRPDII---KGIGIWVLNGKEWQEVA--RMPHKFFQGFGEFDDVFA  347 (405)
Q Consensus       286 ----------~~~~l~---~~~G~L~~v~~~~~~~~~~~~---~~~~vw~l~~~~W~~v~--~i~~~~~~~~~~~~~~~~  347 (405)
                                .....+   ..+|+||++++..........   ..+++|+++.+.|.++.  .||.....       .-+
T Consensus       389 ~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~-------~~~  461 (656)
T 1k3i_A          389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-------HTS  461 (656)
T ss_dssp             EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS-------CEE
T ss_pred             ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc-------CCe
Confidence                      011112   248999999985322111112   25777777778999987  77653211       112


Q ss_pred             EeeCCCEEEEEeCC-----------CCeEEEEECCCCcEEEccCCCC
Q 015502          348 SSGTDDLIYIQSYG-----------APSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       348 ~~~~~~~i~~~~~~-----------~~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      +...++.||+....           ...+.+||+++++|+.++.+|.
T Consensus       462 ~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~  508 (656)
T 1k3i_A          462 VVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI  508 (656)
T ss_dssp             EECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred             EECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC
Confidence            23336667766421           2578999999999999987664

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.56  E-value=2.8e-13  Score=136.96  Aligned_cols=220  Identities=11%  Similarity=0.056  Sum_probs=145.3

Q ss_pred             EEecCceEEEEeCC---CCceEEEEeCcccceeecc-C-----CCCCCCCccceeEEEE--eCCCCcEEEEEEeeeccCC
Q 015502          131 IASSYGLVCFMDND---SRSELYVCNPISKSWKKLE-E-----PPGLKFSDYSALSLSV--DRVSHRYTVSIVKSKQVTG  199 (405)
Q Consensus       131 ~~s~~Gll~~~~~~---~~~~~~v~NP~T~~~~~lP-~-----~~~~~~~~~~~~~~~~--~~~~~~ykv~~~~~~~~~~  199 (405)
                      +++.+|.|++.++.   ..+.++++||.+++|..++ +     +|..+ .  ...+...  +.     +|+++||.....
T Consensus       393 ~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R-~--~hs~~~~~~~~-----~lyv~GG~~~~~  464 (695)
T 2zwa_A          393 VDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR-M--CHTFTTISRNN-----QLLLIGGRKAPH  464 (695)
T ss_dssp             EEECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCC-B--SCEEEEETTTT-----EEEEECCBSSTT
T ss_pred             EEEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccc-c--ceEEEEEccCC-----EEEEEcCCCCCC
Confidence            34477888888763   2357999999999999998 5     33333 2  1222222  22     689998764322


Q ss_pred             CccccceEEEEEeCCCCCcccccccccccccCCCccEEE-CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccc
Q 015502          200 NFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC-DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSF  278 (405)
Q Consensus       200 ~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~  278 (405)
                      .   ....+++||..+++|+... + ++..+..+.++.+ +|+||++|+..+.     . .+..||+.+++|+.+..  .
T Consensus       465 ~---~~~dv~~yd~~t~~W~~~~-~-~p~~R~~h~~~~~~~~~iyv~GG~~~~-----~-~v~~yd~~t~~W~~~~~--~  531 (695)
T 2zwa_A          465 Q---GLSDNWIFDMKTREWSMIK-S-LSHTRFRHSACSLPDGNVLILGGVTEG-----P-AMLLYNVTEEIFKDVTP--K  531 (695)
T ss_dssp             C---BCCCCEEEETTTTEEEECC-C-CSBCCBSCEEEECTTSCEEEECCBCSS-----C-SEEEEETTTTEEEECCC--S
T ss_pred             C---ccccEEEEeCCCCcEEECC-C-CCCCcccceEEEEcCCEEEEECCCCCC-----C-CEEEEECCCCceEEccC--C
Confidence            1   1347899999999999974 3 3344566777775 9999999865421     1 79999999999985421  1


Q ss_pred             cccCCccccCceEEeC---CcEEEEEccccccccCccceEEEEEEeCce------eEEEeccChhHHhccCCCCceeEEe
Q 015502          279 IPVPCALTCGRLMNLK---EKLVMVGGIGKQDRPDIIKGIGIWVLNGKE------WQEVARMPHKFFQGFGEFDDVFASS  349 (405)
Q Consensus       279 ~~~p~~~~~~~l~~~~---G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~------W~~v~~i~~~~~~~~~~~~~~~~~~  349 (405)
                      .++|..+.....++++   |+||+++|..... ......+.+|+++.++      |+++..+|..  ..+     ..++.
T Consensus       532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~--~R~-----~~~~~  603 (695)
T 2zwa_A          532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-TTVSDKAIIFKYDAENATEPITVIKKLQHPLF--QRY-----GSQIK  603 (695)
T ss_dssp             SGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-SCBCCEEEEEEECTTCSSCCEEEEEEEECGGG--CCB-----SCEEE
T ss_pred             CCCCCcccceeEEEEeCCCCEEEEECCcCCCC-CeeeCcEEEEEccCCccccceEEEEcCCCCCC--Ccc-----cceEE
Confidence            1255555555545555   8999999863221 1235678888888887      8998876421  111     11222


Q ss_pred             eCC-CEEEEEeC--------CCCeEEEEECCCCcEEEcc
Q 015502          350 GTD-DLIYIQSY--------GAPSLLVYDMNLKQWRWSH  379 (405)
Q Consensus       350 ~~~-~~i~~~~~--------~~~~~~~Yd~~~~~w~~l~  379 (405)
                      ..+ +.||+...        ....+.+||+++++|+.++
T Consensus       604 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  642 (695)
T 2zwa_A          604 YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP  642 (695)
T ss_dssp             EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred             EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence            334 78888653        1457999999999999753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.46  E-value=3e-12  Score=129.04  Aligned_cols=215  Identities=12%  Similarity=0.098  Sum_probs=138.1

Q ss_pred             eeEEecCCCCeeeeccCCCCCCCCe---EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEE-
Q 015502          105 IGYAYDPILRKWYGIELPCIETSNW---FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV-  180 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~~~---~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~-  180 (405)
                      ....||+.+++|..++....++..+   .....+|.|++.++.....+++|||.|++|..+++++..| ..+.  +... 
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s--~~~~~  296 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQS--SATMS  296 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCE--EEECT
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccc-cccc--eEEec
Confidence            4568999999998875332333322   3344689999998865568999999999999999887655 2222  2222 


Q ss_pred             eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccc----ccccccc---------------------------
Q 015502          181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSW----KEVLTGW---------------------------  229 (405)
Q Consensus       181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~----~~~~~~~---------------------------  229 (405)
                      +.     +|+++|+......   ....+++||..+++|+...    .+++...                           
T Consensus       297 dg-----~iyv~GG~~~~~~---~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~  368 (656)
T 1k3i_A          297 DG-----RVFTIGGSWSGGV---FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS  368 (656)
T ss_dssp             TS-----CEEEECCCCCSSS---CCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred             CC-----eEEEEeCcccCCc---ccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCc
Confidence            22     7888887321111   1357899999999998752    1111100                           


Q ss_pred             -----------------------------cCCCccEE---ECcEEEeeEEecCCCCCCCc---cEEEEEECCCCcchhhh
Q 015502          230 -----------------------------RAGDESII---CDGVLYFLIYATGGGAPENR---HGLISFNLSSRSSHALL  274 (405)
Q Consensus       230 -----------------------------~~~~~~v~---~~g~iy~l~~~~~~~~~~~~---~~i~~fD~~~~~w~~~~  274 (405)
                                                   +....+++   .+|+||++++..+.......   ..+..||+.+++|..+.
T Consensus       369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  448 (656)
T 1k3i_A          369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA  448 (656)
T ss_dssp             SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC
T ss_pred             cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc
Confidence                                         00112232   38999999864321111111   26889999999997421


Q ss_pred             cccccccCCccccCceEEe-CCcEEEEEcccccc---ccCccceEEEEEEeCceeEEEeccCh
Q 015502          275 IKSFIPVPCALTCGRLMNL-KEKLVMVGGIGKQD---RPDIIKGIGIWVLNGKEWQEVARMPH  333 (405)
Q Consensus       275 ~~~~~~~p~~~~~~~l~~~-~G~L~~v~~~~~~~---~~~~~~~~~vw~l~~~~W~~v~~i~~  333 (405)
                         .-++|..+....++.. +|+||++++.....   .......+++|+++.++|+.+..++.
T Consensus       449 ---~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~  508 (656)
T 1k3i_A          449 ---SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI  508 (656)
T ss_dssp             ---TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred             ---cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC
Confidence               1266766666666666 99999999854211   11235678999999999999887764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.42  E-value=1.3e-11  Score=124.92  Aligned_cols=209  Identities=11%  Similarity=0.049  Sum_probs=140.2

Q ss_pred             eeEEecCCCCeeeeccCC------CCCCCCeEEEec--CceEEEEeCCC-----CceEEEEeCcccceeeccCCCCCCCC
Q 015502          105 IGYAYDPILRKWYGIELP------CIETSNWFIASS--YGLVCFMDNDS-----RSELYVCNPISKSWKKLEEPPGLKFS  171 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p------~~~~~~~~~~s~--~Gll~~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~  171 (405)
                      ....||+..++|..++++      ..++..+..+..  +|.|++.++..     .+.++++||.|++|..++++|.++..
T Consensus       413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~  492 (695)
T 2zwa_A          413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR  492 (695)
T ss_dssp             CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS
T ss_pred             cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc
Confidence            467899999999988732      233444556666  89899887632     25799999999999999988865522


Q ss_pred             ccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccc-ccccccCCCccEEEC---cEEEeeEE
Q 015502          172 DYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKE-VLTGWRAGDESIICD---GVLYFLIY  247 (405)
Q Consensus       172 ~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~-~~~~~~~~~~~v~~~---g~iy~l~~  247 (405)
                       +.++.+ .+.     +|+++||....      . .+++||..+++|+..... .++..+..+.+++++   |+||++|+
T Consensus       493 -h~~~~~-~~~-----~iyv~GG~~~~------~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG  558 (695)
T 2zwa_A          493 -HSACSL-PDG-----NVLILGGVTEG------P-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG  558 (695)
T ss_dssp             -CEEEEC-TTS-----CEEEECCBCSS------C-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred             -ceEEEE-cCC-----EEEEECCCCCC------C-CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence             221211 122     68888875321      1 789999999999987531 123334555656766   99999986


Q ss_pred             ecCCCCCCCccEEEEEECCCCc------chhhhccccccc-CCccccCceEEeC-CcEEEEEccccccccCccceEEEEE
Q 015502          248 ATGGGAPENRHGLISFNLSSRS------SHALLIKSFIPV-PCALTCGRLMNLK-EKLVMVGGIGKQDRPDIIKGIGIWV  319 (405)
Q Consensus       248 ~~~~~~~~~~~~i~~fD~~~~~------w~~~~~~~~~~~-p~~~~~~~l~~~~-G~L~~v~~~~~~~~~~~~~~~~vw~  319 (405)
                      .... .......+.+||+.+++      |+.+     .++ +..+....++..+ |+||+++|............+.+|+
T Consensus       559 ~~~~-~~~~~~~v~~yd~~~~~w~~~~~W~~~-----~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          559 GFMD-QTTVSDKAIIFKYDAENATEPITVIKK-----LQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             BCTT-SSCBCCEEEEEEECTTCSSCCEEEEEE-----EECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             cCCC-CCeeeCcEEEEEccCCccccceEEEEc-----CCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            5311 11334689999999999      5532     222 2344555677888 9999999864322112356788998


Q ss_pred             EeCceeEEEeccChh
Q 015502          320 LNGKEWQEVARMPHK  334 (405)
Q Consensus       320 l~~~~W~~v~~i~~~  334 (405)
                      ++.++|+. ..+|..
T Consensus       633 ~~t~~W~~-~~~p~~  646 (695)
T 2zwa_A          633 PLSETLTS-IPISRR  646 (695)
T ss_dssp             TTTTEEEE-CCCCHH
T ss_pred             CCCCeEEE-eecccc
Confidence            88999994 355654

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.10  E-value=6.4e-11  Score=77.00  Aligned_cols=43  Identities=28%  Similarity=0.534  Sum_probs=38.7

Q ss_pred             ccCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhh
Q 015502           40 SVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFL   82 (405)
Q Consensus        40 ~~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~   82 (405)
                      ..+..||+|++.+||++||.+++.++++|||+|+.++.++.|.
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW   49 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence            3466999999999999999999999999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.00  E-value=8.2e-07  Score=84.68  Aligned_cols=43  Identities=21%  Similarity=0.458  Sum_probs=38.5

Q ss_pred             cCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhh
Q 015502           41 VDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW   83 (405)
Q Consensus        41 ~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~   83 (405)
                      +...||+|++..||+.|++++|.++..|||+|+.++.++.+.+
T Consensus        18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~   60 (445)
T 2ovr_B           18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR   60 (445)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred             hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhh
Confidence            3558999999999999999999999999999999998876544

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.96  E-value=3.2e-10  Score=100.32  Aligned_cols=47  Identities=32%  Similarity=0.492  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHhcCChhhhH-HHhhcchhhHhhhcChhhhhhhccc
Q 015502           42 DLILPDDLLERILAYLPIASIF-RAGCVCRRWHEIVSSRRFLWNFSNV   88 (405)
Q Consensus        42 ~~~LP~dll~~Il~~Lp~~~l~-r~r~VcK~W~~~i~~~~F~~~~~~~   88 (405)
                      ...||+|||.+||++||+++|+ |+++|||+|+.++.++.|.+.+...
T Consensus        51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~   98 (297)
T 2e31_A           51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQ   98 (297)
T ss_dssp             TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhc
Confidence            4589999999999999999999 9999999999999999998887654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.86  E-value=2.9e-06  Score=81.15  Aligned_cols=39  Identities=23%  Similarity=0.435  Sum_probs=36.0

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcC-hh
Q 015502           42 DLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSS-RR   80 (405)
Q Consensus        42 ~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~-~~   80 (405)
                      ...||+||+.+||+.|++++|+++..|||.|+.++.+ +.
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~   54 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS   54 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHH
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHH
Confidence            3479999999999999999999999999999999998 53

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.71  E-value=1.8e-06  Score=82.09  Aligned_cols=38  Identities=34%  Similarity=0.620  Sum_probs=35.1

Q ss_pred             CCCCHH----HHHHHHhcCChhhhHHHhhcchhhHhhhcChh
Q 015502           43 LILPDD----LLERILAYLPIASIFRAGCVCRRWHEIVSSRR   80 (405)
Q Consensus        43 ~~LP~d----ll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~   80 (405)
                      +.||+|    |+..||+.|++++|.++..|||+|+.++.++.
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~   53 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGM   53 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTT
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChH
Confidence            369999    99999999999999999999999999998764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.99  E-value=2.1e-06  Score=75.05  Aligned_cols=48  Identities=25%  Similarity=0.302  Sum_probs=41.6

Q ss_pred             ccCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhhhhcc
Q 015502           40 SVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSN   87 (405)
Q Consensus        40 ~~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~~~~~   87 (405)
                      +.+..||+|++..||+.|+++||+++.+|||+|+.+++++..-+.+..
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~   50 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL   50 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence            344589999999999999999999999999999999999976554433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.57  E-value=3.5e-05  Score=70.38  Aligned_cols=42  Identities=29%  Similarity=0.552  Sum_probs=38.2

Q ss_pred             ccCCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhh
Q 015502           40 SVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRF   81 (405)
Q Consensus        40 ~~~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F   81 (405)
                      ..|..||+|++.+||.+|+.+++.+++.|||+|+.++.++..
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            347799999999999999999999999999999999987653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.94  E-value=0.00038  Score=68.79  Aligned_cols=36  Identities=25%  Similarity=0.651  Sum_probs=29.5

Q ss_pred             ccCCCCCHHHHHHHHhcCC-hhhhHHHhhcchhhHhh
Q 015502           40 SVDLILPDDLLERILAYLP-IASIFRAGCVCRRWHEI   75 (405)
Q Consensus        40 ~~~~~LP~dll~~Il~~Lp-~~~l~r~r~VcK~W~~~   75 (405)
                      ..|+.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            3577899999999999999 99999999999999988

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.60  E-value=0.2  Score=42.85  Aligned_cols=183  Identities=15%  Similarity=0.076  Sum_probs=100.1

Q ss_pred             EEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCC
Q 015502          177 SLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPEN  256 (405)
Q Consensus       177 ~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~  256 (405)
                      ++.+++.    .++...+..  +     ...+.++|..+++=.... +++. .......+..++.+|.+....       
T Consensus        25 GL~~~~~----~LyestG~~--g-----~S~v~~vD~~tgkv~~~~-~l~~-~~fgeGi~~~~~~ly~ltw~~-------   84 (243)
T 3mbr_X           25 GLFYLRG----HLYESTGET--G-----RSSVRKVDLETGRILQRA-EVPP-PYFGAGIVAWRDRLIQLTWRN-------   84 (243)
T ss_dssp             EEEEETT----EEEEEECCT--T-----SCEEEEEETTTCCEEEEE-ECCT-TCCEEEEEEETTEEEEEESSS-------
T ss_pred             cEEEECC----EEEEECCCC--C-----CceEEEEECCCCCEEEEE-eCCC-CcceeEEEEeCCEEEEEEeeC-------
Confidence            6666652    466544321  0     247899999887543321 2211 112223456699999997543       


Q ss_pred             ccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHH
Q 015502          257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFF  336 (405)
Q Consensus       257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~  336 (405)
                       ..+.+||+.+.+-.     ..++.+  .....|..-+++|++..+.         .  .|+.+|...-+.+.+++-.. 
T Consensus        85 -~~v~v~D~~tl~~~-----~ti~~~--~~Gwglt~dg~~L~vSdgs---------~--~l~~iDp~t~~~~~~I~V~~-  144 (243)
T 3mbr_X           85 -HEGFVYDLATLTPR-----ARFRYP--GEGWALTSDDSHLYMSDGT---------A--VIRKLDPDTLQQVGSIKVTA-  144 (243)
T ss_dssp             -SEEEEEETTTTEEE-----EEEECS--SCCCEEEECSSCEEEECSS---------S--EEEEECTTTCCEEEEEECEE-
T ss_pred             -CEEEEEECCcCcEE-----EEEeCC--CCceEEeeCCCEEEEECCC---------C--eEEEEeCCCCeEEEEEEEcc-
Confidence             58999999887632     123333  2334455555678877641         2  35555654433444433110 


Q ss_pred             hccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCC-CCC------CCcccceeeeeecee
Q 015502          337 QGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCP-VTK------RFPLQLFTGFCFEPR  400 (405)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p-~~~------~~~~~~~~~~~~~p~  400 (405)
                      ..+.- ..+-.....++.||........+.+.|+++++....-++. +.+      ....+.++|+||.|.
T Consensus       145 ~g~~~-~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~  214 (243)
T 3mbr_X          145 GGRPL-DNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE  214 (243)
T ss_dssp             TTEEC-CCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred             CCccc-ccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence            00000 0011122237789988766789999999999875532221 111      113457899999884

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.56  E-value=0.4  Score=43.02  Aligned_cols=230  Identities=7%  Similarity=0.002  Sum_probs=120.2

Q ss_pred             CeeEEecCCCCeeeecc----CC-CCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccce-eeccCCCCCCCCccceeE
Q 015502          104 PIGYAYDPILRKWYGIE----LP-CIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSW-KKLEEPPGLKFSDYSALS  177 (405)
Q Consensus       104 ~~~~~~d~~~~~w~~~~----~p-~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~-~~lP~~~~~~~~~~~~~~  177 (405)
                      .....+|+.+++....-    .. .+...-.-+.-.++.+++... ....+.++|+.|++. ..++....     .  ..
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~-~~~~v~viD~~t~~~~~~i~~~~~-----p--~~   88 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN-NSHVIFAIDINTFKEVGRITGFTS-----P--RY   88 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG-GGTEEEEEETTTCCEEEEEECCSS-----E--EE
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc-CCCEEEEEECcccEEEEEcCCCCC-----C--cE
Confidence            45678899887764311    00 011111223335677777654 247899999999887 44643211     1  23


Q ss_pred             EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccc-cccccccc-ccCCCccEEECcEEEeeEEecCCCCCC
Q 015502          178 LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVT-SWKEVLTG-WRAGDESIICDGVLYFLIYATGGGAPE  255 (405)
Q Consensus       178 ~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~-~~~~~~~~-~~~~~~~v~~~g~iy~l~~~~~~~~~~  255 (405)
                      +..++.  . ++++....         ...+.++|..+++-.. +..+.... .......++.++.+|+....       
T Consensus        89 i~~~~~--g-~lyv~~~~---------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-------  149 (328)
T 3dsm_A           89 IHFLSD--E-KAYVTQIW---------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-------  149 (328)
T ss_dssp             EEEEET--T-EEEEEEBS---------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-------
T ss_pred             EEEeCC--C-eEEEEECC---------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-------
Confidence            334333  2 57765421         1378889987765321 11110000 00122333468899887531       


Q ss_pred             CccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEcccccccc--CccceEEEEEEeCceeEEEeccC
Q 015502          256 NRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGGIGKQDRP--DIIKGIGIWVLNGKEWQEVARMP  332 (405)
Q Consensus       256 ~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~~~~~~~~--~~~~~~~vw~l~~~~W~~v~~i~  332 (405)
                      ....|..+|+.+.+...     .++...  ....+. .-+|+|+++.........  .....+.+++.+..+....-.++
T Consensus       150 ~~~~v~viD~~t~~~~~-----~i~~g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~  222 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVD-----ELTIGI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK  222 (328)
T ss_dssp             TCCEEEEEETTTTEEEE-----EEECSS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC
T ss_pred             CCCEEEEEECCCCeEEE-----EEEcCC--CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC
Confidence            12489999999877432     222221  112233 346898887642110000  00134666665555544333333


Q ss_pred             hhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015502          333 HKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR  376 (405)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~  376 (405)
                      ..      ....-+++...++.+|+...   .+.+||+++++..
T Consensus       223 ~g------~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~  257 (328)
T 3dsm_A          223 LG------DWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVP  257 (328)
T ss_dssp             TT------CCCEEEEECTTSCEEEEESS---SEEEEETTCSSCC
T ss_pred             CC------CCceeEEEecCCCEEEEEcc---EEEEEECCCCcee
Confidence            21      11223455567899999753   7999999998863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.46  E-value=0.34  Score=43.44  Aligned_cols=232  Identities=10%  Similarity=-0.023  Sum_probs=116.0

Q ss_pred             CeeEEecCCCCee-eeccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCccccee-eccCCCCC-CCCccceeEEEE
Q 015502          104 PIGYAYDPILRKW-YGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWK-KLEEPPGL-KFSDYSALSLSV  180 (405)
Q Consensus       104 ~~~~~~d~~~~~w-~~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~-~lP~~~~~-~~~~~~~~~~~~  180 (405)
                      .....+|+.+++. ..++  .......+..+.+|.+++.+. ....+.++|+.|++.. .++..... .......+++  
T Consensus        64 ~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~lyv~~~-~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--  138 (328)
T 3dsm_A           64 HVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEKAYVTQI-WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--  138 (328)
T ss_dssp             TEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTEEEEEEB-SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--
T ss_pred             CEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCeEEEEEC-CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--
Confidence            3566788877654 2232  222223345556788888763 2478999999998765 34422100 0001112233  


Q ss_pred             eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCC--CCC
Q 015502          181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGA--PEN  256 (405)
Q Consensus       181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~--~~~  256 (405)
                      +..    ++++.....        ...+.++|..+++....- +  ... .. ..+.+  +|.+|+.........  ...
T Consensus       139 ~~~----~lyv~~~~~--------~~~v~viD~~t~~~~~~i-~--~g~-~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~  201 (328)
T 3dsm_A          139 YGK----YVYVNCWSY--------QNRILKIDTETDKVVDEL-T--IGI-QP-TSLVMDKYNKMWTITDGGYEGSPYGYE  201 (328)
T ss_dssp             ETT----EEEEEECTT--------CCEEEEEETTTTEEEEEE-E--CSS-CB-CCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred             ECC----EEEEEcCCC--------CCEEEEEECCCCeEEEEE-E--cCC-Cc-cceEEcCCCCEEEEECCCccCCccccC
Confidence            321    566653210        137889998887653321 1  111 11 12333  689888763210000  000


Q ss_pred             ccEEEEEECCCCcchhhhcccccccCCccccCceEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChh
Q 015502          257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHK  334 (405)
Q Consensus       257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~  334 (405)
                      ...|..+|+.+.+...     .+..|.......++..  ++.||++..           .+.+|+++..+......++..
T Consensus       202 ~~~v~~id~~t~~v~~-----~~~~~~g~~p~~la~~~d~~~lyv~~~-----------~v~~~d~~t~~~~~~~~~~~~  265 (328)
T 3dsm_A          202 APSLYRIDAETFTVEK-----QFKFKLGDWPSEVQLNGTRDTLYWINN-----------DIWRMPVEADRVPVRPFLEFR  265 (328)
T ss_dssp             CCEEEEEETTTTEEEE-----EEECCTTCCCEEEEECTTSCEEEEESS-----------SEEEEETTCSSCCSSCSBCCC
T ss_pred             CceEEEEECCCCeEEE-----EEecCCCCCceeEEEecCCCEEEEEcc-----------EEEEEECCCCceeeeeeecCC
Confidence            2589999999877431     2334322222235544  345565432           255555554443211111110


Q ss_pred             HHhccCCCCceeEEeeCCCEEEEEe----CCCCeEEEEECCCCcEEEc
Q 015502          335 FFQGFGEFDDVFASSGTDDLIYIQS----YGAPSLLVYDMNLKQWRWS  378 (405)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~Yd~~~~~w~~l  378 (405)
                           +....-+++...++.||+..    .....+.+||++.+.-..+
T Consensus       266 -----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i  308 (328)
T 3dsm_A          266 -----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEF  308 (328)
T ss_dssp             -----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEE
T ss_pred             -----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEE
Confidence                 11112234444688899987    4567899999995444444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.21  E-value=0.32  Score=42.04  Aligned_cols=164  Identities=11%  Similarity=0.058  Sum_probs=91.2

Q ss_pred             eEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcc
Q 015502          206 LSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCAL  285 (405)
Q Consensus       206 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~  285 (405)
                      ..+.++|..+++=... .++... ......+..++.+|.+....        ..+.+||+++.+-.     ..++.+.  
T Consensus        65 S~v~~vD~~Tgkv~~~-~~l~~~-~FgeGit~~g~~ly~ltw~~--------~~v~v~D~~t~~~~-----~ti~~~~--  127 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQ-IELGKR-YFGEGISDWKDKIVGLTWKN--------GLGFVWNIRNLRQV-----RSFNYDG--  127 (262)
T ss_dssp             EEEEEECTTTCCEEEE-EECCTT-CCEEEEEEETTEEEEEESSS--------SEEEEEETTTCCEE-----EEEECSS--
T ss_pred             ceEEEEECCCCcEEEE-EecCCc-cceeEEEEeCCEEEEEEeeC--------CEEEEEECccCcEE-----EEEECCC--
Confidence            4789999988764332 122111 11122355689999997543        58999999887732     1233332  


Q ss_pred             ccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHH-hccCCCCceeEEeeCCCEEEEEeCCCCe
Q 015502          286 TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFF-QGFGEFDDVFASSGTDDLIYIQSYGAPS  364 (405)
Q Consensus       286 ~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~  364 (405)
                      ....+..-+++|++..+.         .  .++.+|...-+.+.+++-..- ..+. .-.-+.+  .++.||+.......
T Consensus       128 eG~glt~dg~~L~~SdGs---------~--~i~~iDp~T~~v~~~I~V~~~g~~~~-~lNELe~--~~G~lyan~w~~~~  193 (262)
T 3nol_A          128 EGWGLTHNDQYLIMSDGT---------P--VLRFLDPESLTPVRTITVTAHGEELP-ELNELEW--VDGEIFANVWQTNK  193 (262)
T ss_dssp             CCCCEEECSSCEEECCSS---------S--EEEEECTTTCSEEEEEECEETTEECC-CEEEEEE--ETTEEEEEETTSSE
T ss_pred             CceEEecCCCEEEEECCC---------C--eEEEEcCCCCeEEEEEEeccCCcccc-ccceeEE--ECCEEEEEEccCCe
Confidence            333455445577766541         2  356666544344444332100 0000 0000222  25689988767789


Q ss_pred             EEEEECCCCcEEEccCCC-CCC-----CCcccceeeeeecee
Q 015502          365 LLVYDMNLKQWRWSHKCP-VTK-----RFPLQLFTGFCFEPR  400 (405)
Q Consensus       365 ~~~Yd~~~~~w~~l~~~p-~~~-----~~~~~~~~~~~~~p~  400 (405)
                      +.+.|+++++....-+.+ +.+     ....+.++|+||.|.
T Consensus       194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred             EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence            999999999876543332 111     112457899999884

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.11  E-value=0.0021  Score=63.37  Aligned_cols=34  Identities=32%  Similarity=0.645  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHhcC-ChhhhHHHhhcchhhHhhh
Q 015502           43 LILPDDLLERILAYL-PIASIFRAGCVCRRWHEIV   76 (405)
Q Consensus        43 ~~LP~dll~~Il~~L-p~~~l~r~r~VcK~W~~~i   76 (405)
                      +.||+|++.+||++| +.+++.+++.|||+|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            469999999999999 8999999999999999884

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.96  E-value=0.8  Score=40.53  Aligned_cols=245  Identities=8%  Similarity=-0.003  Sum_probs=118.0

Q ss_pred             CeeEEecCCCCeeeeccCCCCCCCCe-EEEecCceEEEEeCCCCc--eEEEEeCcccceeeccCCCCCCCCccceeEEEE
Q 015502          104 PIGYAYDPILRKWYGIELPCIETSNW-FIASSYGLVCFMDNDSRS--ELYVCNPISKSWKKLEEPPGLKFSDYSALSLSV  180 (405)
Q Consensus       104 ~~~~~~d~~~~~w~~~~~p~~~~~~~-~~~s~~Gll~~~~~~~~~--~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~  180 (405)
                      .....+|+..++.....+........ +.-+.+|-.+........  .+.++|+.+++....-+..  .    ....+.+
T Consensus        62 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~----~~~~~~~  135 (331)
T 3u4y_A           62 QTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--Y----DAVGIAI  135 (331)
T ss_dssp             CEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--T----TEEEEEE
T ss_pred             CeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--C----CccceEE
Confidence            35566777665531111111112223 444444443334332223  8999999998775532211  1    1235556


Q ss_pred             eCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC-cccccccccccccCCCccEEE--CcE-EEeeEEecCCCCCCC
Q 015502          181 DRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM-WVTSWKEVLTGWRAGDESIIC--DGV-LYFLIYATGGGAPEN  256 (405)
Q Consensus       181 ~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~-W~~~~~~~~~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~  256 (405)
                      ++..+ + +++.....        ...+.+|+...+. -......... .......+.+  +|. +|+.+..        
T Consensus       136 spdg~-~-l~~~~~~~--------~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~--------  196 (331)
T 3u4y_A          136 SPNGN-G-LILIDRSS--------ANTVRRFKIDADGVLFDTGQEFIS-GGTRPFNITFTPDGNFAFVANLI--------  196 (331)
T ss_dssp             CTTSS-C-EEEEEETT--------TTEEEEEEECTTCCEEEEEEEEEC-SSSSEEEEEECTTSSEEEEEETT--------
T ss_pred             CCCCC-E-EEEEecCC--------CceEEEEEECCCCcEeecCCcccc-CCCCccceEECCCCCEEEEEeCC--------
Confidence            66543 3 44433211        1126677654322 1110000000 0001112222  565 6665422        


Q ss_pred             ccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEeCceeEEEeccChh
Q 015502          257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHK  334 (405)
Q Consensus       257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~  334 (405)
                      ...+..||+.+.+..+    .....+.......+. .-+|+ ||+....        ...+.+|+++..+.+.+..++..
T Consensus       197 ~~~v~v~d~~~~~~~~----~~~~~~~~~~~~~~~~spdg~~l~v~~~~--------~~~i~~~d~~~~~~~~~~~~~~~  264 (331)
T 3u4y_A          197 GNSIGILETQNPENIT----LLNAVGTNNLPGTIVVSRDGSTVYVLTES--------TVDVFNFNQLSGTLSFVKSFGHG  264 (331)
T ss_dssp             TTEEEEEECSSTTSCE----EEEEEECSSCCCCEEECTTSSEEEEECSS--------EEEEEEEETTTTEEEEEEEEECC
T ss_pred             CCeEEEEECCCCcccc----eeeeccCCCCCceEEECCCCCEEEEEEcC--------CCEEEEEECCCCceeeecccccc
Confidence            2479999998766310    011112211122333 33577 5544431        24588888887766555544322


Q ss_pred             HH--hccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCCCCC
Q 015502          335 FF--QGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCPVTK  385 (405)
Q Consensus       335 ~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p~~~  385 (405)
                      +.  .........+++...|+.+|+.......+.+||++++.-..+......+
T Consensus       265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g  317 (331)
T 3u4y_A          265 LLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANG  317 (331)
T ss_dssp             CCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBS
T ss_pred             cccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccC
Confidence            10  0000000124566788899998766779999999999888776655433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.91  E-value=0.2  Score=43.43  Aligned_cols=163  Identities=14%  Similarity=0.059  Sum_probs=89.3

Q ss_pred             EEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc
Q 015502          207 SIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT  286 (405)
Q Consensus       207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~  286 (405)
                      .+.++|..+++=....  ++. .......+..++.+|.+....        ..+.+||+++.+-.     ..++.+  ..
T Consensus        76 ~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~~g~~Ly~ltw~~--------~~v~V~D~~Tl~~~-----~ti~~~--~e  137 (268)
T 3nok_A           76 TLRQLSLESAQPVWME--RLG-NIFAEGLASDGERLYQLTWTE--------GLLFTWSGMPPQRE-----RTTRYS--GE  137 (268)
T ss_dssp             EEEECCSSCSSCSEEE--ECT-TCCEEEEEECSSCEEEEESSS--------CEEEEEETTTTEEE-----EEEECS--SC
T ss_pred             EEEEEECCCCcEEeEE--CCC-CcceeEEEEeCCEEEEEEccC--------CEEEEEECCcCcEE-----EEEeCC--Cc
Confidence            4888898877643321  111 111122345589999997543        58999999987732     123333  23


Q ss_pred             cCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEE
Q 015502          287 CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL  366 (405)
Q Consensus       287 ~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  366 (405)
                      ...|..-+++||+..+.         .  .++.+|...-+.+.+++-.. .... -..+-.....++.||+.......+.
T Consensus       138 GwGLt~Dg~~L~vSdGs---------~--~l~~iDp~T~~v~~~I~V~~-~g~~-v~~lNeLe~~dG~lyanvw~s~~I~  204 (268)
T 3nok_A          138 GWGLCYWNGKLVRSDGG---------T--MLTFHEPDGFALVGAVQVKL-RGQP-VELINELECANGVIYANIWHSSDVL  204 (268)
T ss_dssp             CCCEEEETTEEEEECSS---------S--EEEEECTTTCCEEEEEECEE-TTEE-CCCEEEEEEETTEEEEEETTCSEEE
T ss_pred             eeEEecCCCEEEEECCC---------C--EEEEEcCCCCeEEEEEEeCC-CCcc-cccccccEEeCCEEEEEECCCCeEE
Confidence            34556556677777641         2  45555654333444433110 0000 0001111122668998876678999


Q ss_pred             EEECCCCcEEEccCCC-CC------CCCcccceeeeeecee
Q 015502          367 VYDMNLKQWRWSHKCP-VT------KRFPLQLFTGFCFEPR  400 (405)
Q Consensus       367 ~Yd~~~~~w~~l~~~p-~~------~~~~~~~~~~~~~~p~  400 (405)
                      +.|+++++....-+.. ..      .....+.++|+||.|.
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence            9999999875532221 10      1113467899999984

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=95.87  E-value=0.87  Score=40.26  Aligned_cols=77  Identities=9%  Similarity=0.015  Sum_probs=49.2

Q ss_pred             ceEEEEEEe--CceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE--ECCCCcEEEccCCCCCCCCc
Q 015502          313 KGIGIWVLN--GKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY--DMNLKQWRWSHKCPVTKRFP  388 (405)
Q Consensus       313 ~~~~vw~l~--~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y--d~~~~~w~~l~~~p~~~~~~  388 (405)
                      ..+.+|+++  .+.++.+..++...      ....+++...|+.+|+....+..+.+|  |.++++++.+...+... . 
T Consensus       253 ~~i~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~-~-  324 (343)
T 1ri6_A          253 SLITVFSVSEDGSVLSKEGFQPTET------QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQ-G-  324 (343)
T ss_dssp             TEEEEEEECTTSCCEEEEEEEECSS------SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSS-S-
T ss_pred             CEEEEEEEcCCCCceEEeeeecCCC------ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCC-C-
Confidence            469999998  45677666554210      112345556788888876556778888  77788898887655421 1 


Q ss_pred             ccceeeeeecee
Q 015502          389 LQLFTGFCFEPR  400 (405)
Q Consensus       389 ~~~~~~~~~~p~  400 (405)
                         -.+++|.|.
T Consensus       325 ---p~~i~~~~~  333 (343)
T 1ri6_A          325 ---PMWVVVNAH  333 (343)
T ss_dssp             ---CCEEEEEEE
T ss_pred             ---CeeEEEEcc
Confidence               236666664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.40  E-value=1.4  Score=39.35  Aligned_cols=241  Identities=10%  Similarity=0.094  Sum_probs=115.5

Q ss_pred             eEEecCCCCeeeeccCC-CCCCCCeEEEecCceEEEEeC-CCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC
Q 015502          106 GYAYDPILRKWYGIELP-CIETSNWFIASSYGLVCFMDN-DSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV  183 (405)
Q Consensus       106 ~~~~d~~~~~w~~~~~p-~~~~~~~~~~s~~Gll~~~~~-~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~  183 (405)
                      .+.+|...++...+... .......+.-+.+|-|+.... .....+++|+..+++...+....... .  ....+.+++.
T Consensus        20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~--~p~~~a~spd   96 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-T--PPAYVAVDEA   96 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-C--CCSEEEEETT
T ss_pred             EEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCC-C--CCEEEEECCC
Confidence            45567766665543321 112223345566776555443 22468999999888766654321100 1  1124445554


Q ss_pred             CCcEEEEEEeeeccCCCccccceEEEEEeCC-CCCccccccccccc-----cc---CCCccEEE--CcEEEeeEEecCCC
Q 015502          184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSD-TMMWVTSWKEVLTG-----WR---AGDESIIC--DGVLYFLIYATGGG  252 (405)
Q Consensus       184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~-~~~W~~~~~~~~~~-----~~---~~~~~v~~--~g~iy~l~~~~~~~  252 (405)
                      . ++ +++....         ...+.+|+.. ++....... ....     .+   .....+.+  +|.+|+....    
T Consensus        97 g-~~-l~~~~~~---------~~~v~v~~~~~~g~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~----  160 (347)
T 3hfq_A           97 R-QL-VYSANYH---------KGTAEVMKIAADGALTLTDT-VQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG----  160 (347)
T ss_dssp             T-TE-EEEEETT---------TTEEEEEEECTTSCEEEEEE-EECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT----
T ss_pred             C-CE-EEEEeCC---------CCEEEEEEeCCCCCeeecce-eecCCCCCCccccCCCceEEEECCCCcEEEEeCC----
Confidence            3 22 4443311         1256777763 333322211 0000     00   00112333  6776654421    


Q ss_pred             CCCCccEEEEEECC-CCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEeC--ceeEE
Q 015502          253 APENRHGLISFNLS-SRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQE  327 (405)
Q Consensus       253 ~~~~~~~i~~fD~~-~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~  327 (405)
                          ...+..||+. +.+....   .....+.......+. .-+|+ ||+....        ...+.+|+++.  ++++.
T Consensus       161 ----~~~v~~~~~~~~g~~~~~---~~~~~~~g~~p~~~~~spdg~~l~v~~~~--------~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          161 ----SDKVYVYNVSDAGQLSEQ---SVLTMEAGFGPRHLVFSPDGQYAFLAGEL--------SSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             ----TTEEEEEEECTTSCEEEE---EEEECCTTCCEEEEEECTTSSEEEEEETT--------TTEEEEEEEETTTTEEEE
T ss_pred             ----CCEEEEEEECCCCcEEEe---eeEEcCCCCCCceEEECCCCCEEEEEeCC--------CCEEEEEEecCCCCceEE
Confidence                2478889987 4433211   011112111111233 33576 6655532        24689999995  56655


Q ss_pred             Eecc---ChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECC-CCcEEEccCCC
Q 015502          328 VARM---PHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMN-LKQWRWSHKCP  382 (405)
Q Consensus       328 v~~i---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~-~~~w~~l~~~p  382 (405)
                      +..+   +..... . ....-+++...|+.+|+.......+.+||++ +++++.+...+
T Consensus       226 ~~~~~~~~~~~~~-~-~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~  282 (347)
T 3hfq_A          226 LGIVKTIPADYTA-H-NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS  282 (347)
T ss_dssp             EEEEESSCTTCCS-C-CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE
T ss_pred             eeeeeecCCCCCC-C-CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe
Confidence            4433   321000 0 0011234556788898877667789999997 34666655443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.29  E-value=1.6  Score=39.52  Aligned_cols=221  Identities=10%  Similarity=0.045  Sum_probs=108.8

Q ss_pred             cCCCCeeEEecCCCCeeee-ccCCCCCCCCeEEEecCc-eEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeE
Q 015502          100 SSDEPIGYAYDPILRKWYG-IELPCIETSNWFIASSYG-LVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALS  177 (405)
Q Consensus       100 ~~~~~~~~~~d~~~~~w~~-~~~p~~~~~~~~~~s~~G-ll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~  177 (405)
                      .........+|...++... +...  .....+.-+.+| .+++.+. ....+.+||+.+++....-....      ....
T Consensus         8 ~~~d~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~-~d~~i~v~d~~~~~~~~~~~~~~------~v~~   78 (391)
T 1l0q_A            8 NSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANA-HSNDVSIIDTATNNVIATVPAGS------SPQG   78 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEG-GGTEEEEEETTTTEEEEEEECSS------SEEE
T ss_pred             cCCCCEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECC-CCCeEEEEECCCCeEEEEEECCC------Cccc
Confidence            3344456677776665332 1211  111123334455 4444432 24789999999987755422211      2234


Q ss_pred             EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcE-EEeeEEecCCCCC
Q 015502          178 LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGV-LYFLIYATGGGAP  254 (405)
Q Consensus       178 ~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~  254 (405)
                      +.+++.. . .+++.+..         ...+.+||..++.-.....    . ......+.+  +|. +|+.+..      
T Consensus        79 ~~~spdg-~-~l~~~~~~---------~~~v~v~d~~~~~~~~~~~----~-~~~~~~~~~s~dg~~l~~~~~~------  136 (391)
T 1l0q_A           79 VAVSPDG-K-QVYVTNMA---------SSTLSVIDTTSNTVAGTVK----T-GKSPLGLALSPDGKKLYVTNNG------  136 (391)
T ss_dssp             EEECTTS-S-EEEEEETT---------TTEEEEEETTTTEEEEEEE----C-SSSEEEEEECTTSSEEEEEETT------
T ss_pred             eEECCCC-C-EEEEEECC---------CCEEEEEECCCCeEEEEEe----C-CCCcceEEECCCCCEEEEEeCC------
Confidence            5555533 2 24443321         1378899987765422110    0 011122333  444 5555421      


Q ss_pred             CCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEeCceeEEEeccC
Q 015502          255 ENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMP  332 (405)
Q Consensus       255 ~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~  332 (405)
                        ...|..+|+.+.+...     .+....  ....+. .-+|+ |++.+..        ...+.+|++...+-.......
T Consensus       137 --~~~v~~~d~~~~~~~~-----~~~~~~--~~~~~~~~~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~~~~~  199 (391)
T 1l0q_A          137 --DKTVSVINTVTKAVIN-----TVSVGR--SPKGIAVTPDGTKVYVANFD--------SMSISVIDTVTNSVIDTVKVE  199 (391)
T ss_dssp             --TTEEEEEETTTTEEEE-----EEECCS--SEEEEEECTTSSEEEEEETT--------TTEEEEEETTTTEEEEEEECS
T ss_pred             --CCEEEEEECCCCcEEE-----EEecCC--CcceEEECCCCCEEEEEeCC--------CCEEEEEECCCCeEEEEEecC
Confidence              2479999998876431     121111  111222 22454 4444432        245889988765433322211


Q ss_pred             hhHHhccCCCCceeEEeeCCCEEEEEeC--CCCeEEEEECCCCcEE
Q 015502          333 HKFFQGFGEFDDVFASSGTDDLIYIQSY--GAPSLLVYDMNLKQWR  376 (405)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~Yd~~~~~w~  376 (405)
                      ..        ...+++...++.+++...  ....+.+||+++++-.
T Consensus       200 ~~--------~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          200 AA--------PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             SE--------EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CC--------ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            10        012234456778887764  4678999999887543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.29  E-value=1.1  Score=39.66  Aligned_cols=239  Identities=8%  Similarity=0.012  Sum_probs=116.8

Q ss_pred             CEEEEEecCCCCeeEEecCCCCeeeec-cCCCCCCCCeEEEecCc-eEEEEeCCCCceEEEEeCcccce-ee-ccCCCCC
Q 015502           93 PWYFMFTSSDEPIGYAYDPILRKWYGI-ELPCIETSNWFIASSYG-LVCFMDNDSRSELYVCNPISKSW-KK-LEEPPGL  168 (405)
Q Consensus        93 p~l~~~~~~~~~~~~~~d~~~~~w~~~-~~p~~~~~~~~~~s~~G-ll~~~~~~~~~~~~v~NP~T~~~-~~-lP~~~~~  168 (405)
                      ..+++. .........+|+..++.... ..+..+ . .+.-+.+| .+++... ....++++|+.+++. .. +....  
T Consensus        10 ~~~~v~-~~~~~~v~~~d~~~~~~~~~~~~~~~~-~-~~~~s~dg~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~--   83 (331)
T 3u4y_A           10 NFGIVV-EQHLRRISFFSTDTLEILNQITLGYDF-V-DTAITSDCSNVVVTSD-FCQTLVQIETQLEPPKVVAIQEGQ--   83 (331)
T ss_dssp             CEEEEE-EGGGTEEEEEETTTCCEEEEEECCCCE-E-EEEECSSSCEEEEEES-TTCEEEEEECSSSSCEEEEEEECS--
T ss_pred             CEEEEE-ecCCCeEEEEeCcccceeeeEEccCCc-c-eEEEcCCCCEEEEEeC-CCCeEEEEECCCCceeEEecccCC--
Confidence            344432 33334667788877665332 322111 1 34444455 4555543 246899999999875 22 22211  


Q ss_pred             CCCccceeE-EEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcE-EEe
Q 015502          169 KFSDYSALS-LSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGV-LYF  244 (405)
Q Consensus       169 ~~~~~~~~~-~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~-iy~  244 (405)
                           .... +.+++.. .+ ++ +....  +.    ...+.+|+..++.-....   ...  .....+.+  +|. +|+
T Consensus        84 -----~~~~~~~~s~dg-~~-l~-~~~~~--~~----~~~i~v~d~~~~~~~~~~---~~~--~~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           84 -----SSMADVDITPDD-QF-AV-TVTGL--NH----PFNMQSYSFLKNKFISTI---PIP--YDAVGIAISPNGNGLIL  144 (331)
T ss_dssp             -----SCCCCEEECTTS-SE-EE-ECCCS--SS----SCEEEEEETTTTEEEEEE---ECC--TTEEEEEECTTSSCEEE
T ss_pred             -----CCccceEECCCC-CE-EE-EecCC--CC----cccEEEEECCCCCeEEEE---ECC--CCccceEECCCCCEEEE
Confidence                 1112 4455532 23 33 32211  00    127889998776543211   110  01122232  554 666


Q ss_pred             eEEecCCCCCCCccE-EEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEe
Q 015502          245 LIYATGGGAPENRHG-LISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLN  321 (405)
Q Consensus       245 l~~~~~~~~~~~~~~-i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~  321 (405)
                      .....        .. +..||+..+.-.  ........+.......+. .-+|+ |++....        ...+.+|+++
T Consensus       145 ~~~~~--------~~~i~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--------~~~v~v~d~~  206 (331)
T 3u4y_A          145 IDRSS--------ANTVRRFKIDADGVL--FDTGQEFISGGTRPFNITFTPDGNFAFVANLI--------GNSIGILETQ  206 (331)
T ss_dssp             EEETT--------TTEEEEEEECTTCCE--EEEEEEEECSSSSEEEEEECTTSSEEEEEETT--------TTEEEEEECS
T ss_pred             EecCC--------CceEEEEEECCCCcE--eecCCccccCCCCccceEECCCCCEEEEEeCC--------CCeEEEEECC
Confidence            65321        24 777776543210  000000011111111232 23566 6665532        2459999988


Q ss_pred             Ccee-EEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccC
Q 015502          322 GKEW-QEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHK  380 (405)
Q Consensus       322 ~~~W-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~  380 (405)
                      ..+. ..+..++..      ....-+++...|+.+|+.......+.+||+++++.+.+..
T Consensus       207 ~~~~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~  260 (331)
T 3u4y_A          207 NPENITLLNAVGTN------NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKS  260 (331)
T ss_dssp             STTSCEEEEEEECS------SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred             CCcccceeeeccCC------CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecc
Confidence            6554 223333321      0112345566788898876656689999999998866553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.27  E-value=1.7  Score=39.49  Aligned_cols=214  Identities=11%  Similarity=0.011  Sum_probs=109.5

Q ss_pred             CeeEEecCCCC--eeeeccCCCC-------CCCC-eEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCcc
Q 015502          104 PIGYAYDPILR--KWYGIELPCI-------ETSN-WFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDY  173 (405)
Q Consensus       104 ~~~~~~d~~~~--~w~~~~~p~~-------~~~~-~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~  173 (405)
                      ....++|..++  .|.. .++..       .... ......+|.|++...  ...++.+|+.|++..---..+...   .
T Consensus        63 g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--~g~l~a~d~~tG~~~W~~~~~~~~---~  136 (376)
T 3q7m_A           63 GLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--KAQVYALNTSDGTVAWQTKVAGEA---L  136 (376)
T ss_dssp             SEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEEETTEEEEEET--TSEEEEEETTTCCEEEEEECSSCC---C
T ss_pred             CeEEEEEccCCceeeee-cCccccccccccCcccccCceEeCCEEEEEcC--CCEEEEEECCCCCEEEEEeCCCce---E
Confidence            36778888655  3532 22111       1111 124456788887654  378999999998643211111100   1


Q ss_pred             ceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC--cccccccccccccCCCccEEECcEEEeeEEecCC
Q 015502          174 SALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM--WVTSWKEVLTGWRAGDESIICDGVLYFLIYATGG  251 (405)
Q Consensus       174 ~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~--W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~  251 (405)
                      ....+ .+    . .|++...          .-.+..||..+++  |+...............++..+|.+|+-..    
T Consensus       137 ~~p~~-~~----~-~v~v~~~----------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~----  196 (376)
T 3q7m_A          137 SRPVV-SD----G-LVLIHTS----------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD----  196 (376)
T ss_dssp             SCCEE-ET----T-EEEEECT----------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT----
T ss_pred             cCCEE-EC----C-EEEEEcC----------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC----
Confidence            11111 11    1 4444321          1267888876654  876432111111223456777888877432    


Q ss_pred             CCCCCccEEEEEECCCCc--chhhhcccccccCCcc--------ccCceEEeCCcEEEEEccccccccCccceEEEEEEe
Q 015502          252 GAPENRHGLISFNLSSRS--SHALLIKSFIPVPCAL--------TCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLN  321 (405)
Q Consensus       252 ~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~~--------~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~  321 (405)
                           ...+.+||+.+.+  |+.     ....|...        .....+..+|.||+.+..         ..+..++++
T Consensus       197 -----~g~l~~~d~~tG~~~w~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~---------g~l~~~d~~  257 (376)
T 3q7m_A          197 -----NGRVSAVLMEQGQMIWQQ-----RISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN---------GNLTALDLR  257 (376)
T ss_dssp             -----TTEEEEEETTTCCEEEEE-----ECCC-----------CCCCCCEEETTEEEEECTT---------SCEEEEETT
T ss_pred             -----CCEEEEEECCCCcEEEEE-----ecccCCCCcccccccccCCCcEEECCEEEEEecC---------cEEEEEECC
Confidence                 2479999997655  431     11212110        112345567888876531         235556555


Q ss_pred             Cc--eeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015502          322 GK--EWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR  376 (405)
Q Consensus       322 ~~--~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~  376 (405)
                      ++  .|..-  ++           ........++.||+... ...+++||+++++-.
T Consensus       258 tG~~~w~~~--~~-----------~~~~~~~~~~~l~~~~~-~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          258 SGQIMWKRE--LG-----------SVNDFIVDGNRIYLVDQ-NDRVMALTIDGGVTL  300 (376)
T ss_dssp             TCCEEEEEC--CC-----------CEEEEEEETTEEEEEET-TCCEEEEETTTCCEE
T ss_pred             CCcEEeecc--CC-----------CCCCceEECCEEEEEcC-CCeEEEEECCCCcEE
Confidence            43  57642  11           11122335788888763 468999999988643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.01  E-value=2.1  Score=39.35  Aligned_cols=204  Identities=11%  Similarity=0.108  Sum_probs=99.5

Q ss_pred             cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015502          134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS  213 (405)
Q Consensus       134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s  213 (405)
                      .+|.+++.+.. ...+.+||+.+++...................+..++..   ++++.++.         ...+.+|+.
T Consensus       132 ~~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~s~~~---------d~~v~~~d~  198 (433)
T 3bws_A          132 DNTRLAIPLLE-DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN---ELWVSQMQ---------ANAVHVFDL  198 (433)
T ss_dssp             SSSEEEEEBTT-SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT---EEEEEEGG---------GTEEEEEET
T ss_pred             CCCeEEEEeCC-CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC---EEEEEECC---------CCEEEEEEC
Confidence            36777666542 367999999998877643321111111112233443322   34444432         237889998


Q ss_pred             CCCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCce
Q 015502          214 DTMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRL  290 (405)
Q Consensus       214 ~~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l  290 (405)
                      .+++-...-.    ........+.+  +| .+|+.+..        ...|..||+.+.+...     .+....  ....+
T Consensus       199 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~--------~~~i~~~d~~~~~~~~-----~~~~~~--~~~~~  259 (433)
T 3bws_A          199 KTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWI--------SEDISVIDRKTKLEIR-----KTDKIG--LPRGL  259 (433)
T ss_dssp             TTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETT--------TTEEEEEETTTTEEEE-----ECCCCS--EEEEE
T ss_pred             CCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecC--------CCcEEEEECCCCcEEE-----EecCCC--CceEE
Confidence            7654322110    00011112222  34 45555422        2479999998776321     122111  11122


Q ss_pred             EE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEE
Q 015502          291 MN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYD  369 (405)
Q Consensus       291 ~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd  369 (405)
                      .. -+|+.++++.............+.+|++...+-......+..        ...+++...++.+|+....+..+.+||
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~g~~l~~~~~~~~~v~v~d  331 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN--------KRHIVSGNTENKIYVSDMCCSKIEVYD  331 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC--------EEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC--------cceEEECCCCCEEEEEecCCCEEEEEE
Confidence            22 256555554432110000124688898876543222111110        012334556778888766778999999


Q ss_pred             CCCCcEEE
Q 015502          370 MNLKQWRW  377 (405)
Q Consensus       370 ~~~~~w~~  377 (405)
                      +++++...
T Consensus       332 ~~~~~~~~  339 (433)
T 3bws_A          332 LKEKKVQK  339 (433)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCcEEE
Confidence            99876543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.97  E-value=1.4  Score=40.08  Aligned_cols=188  Identities=13%  Similarity=0.101  Sum_probs=97.3

Q ss_pred             eEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCC
Q 015502          137 LVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTM  216 (405)
Q Consensus       137 ll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~  216 (405)
                      .+++.+. ....+.+||..+++....-...    .  ....+.+++.. . .+++.++.         ...+.+||..++
T Consensus         3 ~l~vs~~-~d~~v~v~d~~~~~~~~~~~~~----~--~~~~~~~s~dg-~-~l~~~~~~---------d~~i~v~d~~~~   64 (391)
T 1l0q_A            3 FAYIANS-ESDNISVIDVTSNKVTATIPVG----S--NPMGAVISPDG-T-KVYVANAH---------SNDVSIIDTATN   64 (391)
T ss_dssp             EEEEEET-TTTEEEEEETTTTEEEEEEECS----S--SEEEEEECTTS-S-EEEEEEGG---------GTEEEEEETTTT
T ss_pred             EEEEEcC-CCCEEEEEECCCCeEEEEeecC----C--CcceEEECCCC-C-EEEEECCC---------CCeEEEEECCCC
Confidence            3444443 3478999999988765432211    1  12344454432 2 34444321         237889998776


Q ss_pred             CcccccccccccccCCCccEEE--CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEE-
Q 015502          217 MWVTSWKEVLTGWRAGDESIIC--DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMN-  292 (405)
Q Consensus       217 ~W~~~~~~~~~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~-  292 (405)
                      +-...-   ...  .....+.+  +|. +|+.+..        ...|..||+.+.+...     .+....  ....+.. 
T Consensus        65 ~~~~~~---~~~--~~v~~~~~spdg~~l~~~~~~--------~~~v~v~d~~~~~~~~-----~~~~~~--~~~~~~~s  124 (391)
T 1l0q_A           65 NVIATV---PAG--SSPQGVAVSPDGKQVYVTNMA--------SSTLSVIDTTSNTVAG-----TVKTGK--SPLGLALS  124 (391)
T ss_dssp             EEEEEE---ECS--SSEEEEEECTTSSEEEEEETT--------TTEEEEEETTTTEEEE-----EEECSS--SEEEEEEC
T ss_pred             eEEEEE---ECC--CCccceEECCCCCEEEEEECC--------CCEEEEEECCCCeEEE-----EEeCCC--CcceEEEC
Confidence            543211   000  01122323  344 5554421        2479999998876321     122111  1112322 


Q ss_pred             eCCc-EEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECC
Q 015502          293 LKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMN  371 (405)
Q Consensus       293 ~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~  371 (405)
                      .+|+ |++.+..        ...+.+|++...+..........        ...+.+...++.+|+....+..+.+||++
T Consensus       125 ~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~~~~~~~--------~~~~~~~~dg~~l~~~~~~~~~v~~~d~~  188 (391)
T 1l0q_A          125 PDGKKLYVTNNG--------DKTVSVINTVTKAVINTVSVGRS--------PKGIAVTPDGTKVYVANFDSMSISVIDTV  188 (391)
T ss_dssp             TTSSEEEEEETT--------TTEEEEEETTTTEEEEEEECCSS--------EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEEEeCC--------CCEEEEEECCCCcEEEEEecCCC--------cceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            3465 4455432        24689998887655443322211        11234455677888876667789999999


Q ss_pred             CCcEEEc
Q 015502          372 LKQWRWS  378 (405)
Q Consensus       372 ~~~w~~l  378 (405)
                      +++....
T Consensus       189 ~~~~~~~  195 (391)
T 1l0q_A          189 TNSVIDT  195 (391)
T ss_dssp             TTEEEEE
T ss_pred             CCeEEEE
Confidence            8865443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.49  E-value=2.2  Score=37.01  Aligned_cols=186  Identities=8%  Similarity=-0.002  Sum_probs=95.9

Q ss_pred             eEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCC
Q 015502          176 LSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPE  255 (405)
Q Consensus       176 ~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~  255 (405)
                      -++.+++..   .+|+..+..  .     ...+.++|..+++=... .++.. .......+..++.+|++...       
T Consensus        24 ~Gl~~~~dg---~Lyvstg~~--~-----~s~v~~iD~~tg~v~~~-i~l~~-~~fgeGi~~~g~~lyv~t~~-------   84 (266)
T 2iwa_A           24 QGLVYAEND---TLFESTGLY--G-----RSSVRQVALQTGKVENI-HKMDD-SYFGEGLTLLNEKLYQVVWL-------   84 (266)
T ss_dssp             EEEEECSTT---EEEEEECST--T-----TCEEEEEETTTCCEEEE-EECCT-TCCEEEEEEETTEEEEEETT-------
T ss_pred             ccEEEeCCC---eEEEECCCC--C-----CCEEEEEECCCCCEEEE-EecCC-CcceEEEEEeCCEEEEEEec-------
Confidence            366676642   567654321  0     24889999988763221 11111 11111234457899999743       


Q ss_pred             CccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhH
Q 015502          256 NRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKF  335 (405)
Q Consensus       256 ~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~  335 (405)
                       ...+.+||+.+.+-.     ..++.+ ......+..-+++||+..+         ..  .++.+|...-+.+.+++-..
T Consensus        85 -~~~v~viD~~t~~v~-----~~i~~g-~~~g~glt~Dg~~l~vs~g---------s~--~l~viD~~t~~v~~~I~Vg~  146 (266)
T 2iwa_A           85 -KNIGFIYDRRTLSNI-----KNFTHQ-MKDGWGLATDGKILYGSDG---------TS--ILYEIDPHTFKLIKKHNVKY  146 (266)
T ss_dssp             -CSEEEEEETTTTEEE-----EEEECC-SSSCCEEEECSSSEEEECS---------SS--EEEEECTTTCCEEEEEECEE
T ss_pred             -CCEEEEEECCCCcEE-----EEEECC-CCCeEEEEECCCEEEEECC---------CC--eEEEEECCCCcEEEEEEECC
Confidence             258999999876521     123333 1222234444457776542         12  45555654444444443110


Q ss_pred             HhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCC-C------CCCCcccceeeeeecee
Q 015502          336 FQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCP-V------TKRFPLQLFTGFCFEPR  400 (405)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p-~------~~~~~~~~~~~~~~~p~  400 (405)
                      -....  ..+..+...++.+|+.......+.+.|+++++....-+.+ .      ..........|++|.|.
T Consensus       147 ~~~p~--~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~  216 (266)
T 2iwa_A          147 NGHRV--IRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE  216 (266)
T ss_dssp             TTEEC--CCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred             CCccc--ccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC
Confidence            00000  0111221125689988766789999999999764422221 0      00111245678888874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.39  E-value=0.62  Score=39.79  Aligned_cols=111  Identities=15%  Similarity=0.135  Sum_probs=73.2

Q ss_pred             EEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceE
Q 015502          236 IICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGI  315 (405)
Q Consensus       236 v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~  315 (405)
                      .+.++.+|.-++..      ....|..+|+++.+-.     ..+++|.....-.+...+++||+++-..        ..+
T Consensus        27 ~~~~~~LyestG~~------g~S~v~~vD~~tgkv~-----~~~~l~~~~fgeGi~~~~~~ly~ltw~~--------~~v   87 (243)
T 3mbr_X           27 FYLRGHLYESTGET------GRSSVRKVDLETGRIL-----QRAEVPPPYFGAGIVAWRDRLIQLTWRN--------HEG   87 (243)
T ss_dssp             EEETTEEEEEECCT------TSCEEEEEETTTCCEE-----EEEECCTTCCEEEEEEETTEEEEEESSS--------SEE
T ss_pred             EEECCEEEEECCCC------CCceEEEEECCCCCEE-----EEEeCCCCcceeEEEEeCCEEEEEEeeC--------CEE
Confidence            34578888876432      2458999999998743     2356666555556778899999997421        334


Q ss_pred             EEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015502          316 GIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR  376 (405)
Q Consensus       316 ~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~  376 (405)
                      .|+  |...-+.+.+++...        ...++...++.+|+.. ....+.++|+++.+..
T Consensus        88 ~v~--D~~tl~~~~ti~~~~--------~Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~  137 (243)
T 3mbr_X           88 FVY--DLATLTPRARFRYPG--------EGWALTSDDSHLYMSD-GTAVIRKLDPDTLQQV  137 (243)
T ss_dssp             EEE--ETTTTEEEEEEECSS--------CCCEEEECSSCEEEEC-SSSEEEEECTTTCCEE
T ss_pred             EEE--ECCcCcEEEEEeCCC--------CceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEE
Confidence            444  555555665555321        1246666788888886 4789999999997553

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=93.63  E-value=3.9  Score=36.81  Aligned_cols=211  Identities=10%  Similarity=0.089  Sum_probs=91.0

Q ss_pred             ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015502          133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD  212 (405)
Q Consensus       133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~  212 (405)
                      +.+|.++....  .+.+.|||..+++........... ..-....+.+.+.. .  .++.++.         .-.+.+||
T Consensus       103 s~d~~~l~~s~--dg~v~lWd~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg-~--~l~sgs~---------dg~v~iwd  167 (357)
T 4g56_B          103 VSEKGILVASD--SGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDG-T--QAVSGGK---------DFSVKVWD  167 (357)
T ss_dssp             ETTTEEEEEET--TSCEEEC--------CCCCEEECC-CSSCEEEEEECSSS-S--EEEEEET---------TSCEEEEE
T ss_pred             cCCCCEEEEEC--CCEEEEeeccccceeEEEeeccCC-CCCCEEEEEECCCC-C--EEEEEeC---------CCeEEEEE
Confidence            44565555544  367999999988765443221100 11122344454432 2  2333332         12688898


Q ss_pred             CCCCCcccccccccccccCCCccEEE--CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015502          213 SDTMMWVTSWKEVLTGWRAGDESIIC--DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR  289 (405)
Q Consensus       213 s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~  289 (405)
                      ..++.-...    ..........+.+  ++. +++.+..        ...|..+|+.+.+-..     .+..........
T Consensus       168 ~~~~~~~~~----~~~h~~~v~~v~~s~~~~~~~~s~~~--------dg~v~~wd~~~~~~~~-----~~~~~~~~~~v~  230 (357)
T 4g56_B          168 LSQKAVLKS----YNAHSSEVNCVAACPGKDTIFLSCGE--------DGRILLWDTRKPKPAT-----RIDFCASDTIPT  230 (357)
T ss_dssp             TTTTEEEEE----ECCCSSCEEEEEECTTCSSCEEEEET--------TSCEEECCTTSSSCBC-----BCCCTTCCSCEE
T ss_pred             CCCCcEEEE----EcCCCCCEEEEEEccCCCceeeeecc--------CCceEEEECCCCceee-----eeeecccccccc
Confidence            776543221    1111111122222  222 3333322        1368888887765221     111111111111


Q ss_pred             -eEEe--CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCe
Q 015502          290 -LMNL--KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPS  364 (405)
Q Consensus       290 -l~~~--~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~  364 (405)
                       +...  ++++++++..+        ..+.+|++...+=.......         ...+.+  +...++.+++....+..
T Consensus       231 ~v~~sp~~~~~la~g~~d--------~~i~~wd~~~~~~~~~~~~~---------~~~v~~l~~sp~~~~~lasgs~D~~  293 (357)
T 4g56_B          231 SVTWHPEKDDTFACGDET--------GNVSLVNIKNPDSAQTSAVH---------SQNITGLAYSYHSSPFLASISEDCT  293 (357)
T ss_dssp             EEEECTTSTTEEEEEESS--------SCEEEEESSCGGGCEEECCC---------SSCEEEEEECSSSSCCEEEEETTSC
T ss_pred             chhhhhcccceEEEeecc--------cceeEEECCCCcEeEEEecc---------ceeEEEEEEcCCCCCEEEEEeCCCE
Confidence             2221  45676665432        45899988754311111111         112222  23345444444445678


Q ss_pred             EEEEECCCCcEEEccCCCCCCCCcccceeeeeece
Q 015502          365 LLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEP  399 (405)
Q Consensus       365 ~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p  399 (405)
                      +.+||+++++....-    .|.   ....+++|.|
T Consensus       294 i~iwd~~~~~~~~~~----~H~---~~V~~vafsP  321 (357)
T 4g56_B          294 VAVLDADFSEVFRDL----SHR---DFVTGVAWSP  321 (357)
T ss_dssp             EEEECTTSCEEEEEC----CCS---SCEEEEEECS
T ss_pred             EEEEECCCCcEeEEC----CCC---CCEEEEEEeC
Confidence            999999988654431    232   2356777776

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=93.48  E-value=4.2  Score=36.71  Aligned_cols=196  Identities=11%  Similarity=0.066  Sum_probs=94.0

Q ss_pred             cCceEEEEeCCCCceEEEEeCccccee--eccCCCCC--CC-CccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEE
Q 015502          134 SYGLVCFMDNDSRSELYVCNPISKSWK--KLEEPPGL--KF-SDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSI  208 (405)
Q Consensus       134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~--~lP~~~~~--~~-~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~  208 (405)
                      .+|.|++...  ...++.+|+.|++..  .-......  .. ..........+..    +|++...          .-.+
T Consensus        52 ~~~~v~~~~~--~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~v~~~----------~g~l  115 (376)
T 3q7m_A           52 ADNVVYAADR--AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG----HVYIGSE----------KAQV  115 (376)
T ss_dssp             ETTEEEEECT--TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT----EEEEEET----------TSEE
T ss_pred             ECCEEEEEcC--CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC----EEEEEcC----------CCEE
Confidence            4677776543  367888999887643  22111000  00 0011112222221    4554321          1267


Q ss_pred             EEEeCCCC--CcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCc
Q 015502          209 HIYDSDTM--MWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCA  284 (405)
Q Consensus       209 ~vy~s~~~--~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~  284 (405)
                      ..+|..++  .|+.....     .....++..+|.+|+-..         ...+.+||+.+.+  |+.    . ...+..
T Consensus       116 ~a~d~~tG~~~W~~~~~~-----~~~~~p~~~~~~v~v~~~---------~g~l~~~d~~tG~~~W~~----~-~~~~~~  176 (376)
T 3q7m_A          116 YALNTSDGTVAWQTKVAG-----EALSRPVVSDGLVLIHTS---------NGQLQALNEADGAVKWTV----N-LDMPSL  176 (376)
T ss_dssp             EEEETTTCCEEEEEECSS-----CCCSCCEEETTEEEEECT---------TSEEEEEETTTCCEEEEE----E-CCC---
T ss_pred             EEEECCCCCEEEEEeCCC-----ceEcCCEEECCEEEEEcC---------CCeEEEEECCCCcEEEEE----e-CCCCce
Confidence            88887655  47653211     112346777898887642         2479999997765  542    1 111110


Q ss_pred             --cccCceEEeCCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHH--hccCCCCceeEEeeCCCEEEEE
Q 015502          285 --LTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFF--QGFGEFDDVFASSGTDDLIYIQ  358 (405)
Q Consensus       285 --~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~  358 (405)
                        ......+..+|.|++...         ...+..+++++  ..|+.-...+....  ..+.....  .....++.||+.
T Consensus       177 ~~~~~~~~~~~~~~v~~g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~v~~~  245 (376)
T 3q7m_A          177 SLRGESAPTTAFGAAVVGGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT--TPVVVNGVVFAL  245 (376)
T ss_dssp             --CCCCCCEEETTEEEECCT---------TTEEEEEETTTCCEEEEEECCC-----------CCCC--CCEEETTEEEEE
T ss_pred             eecCCCCcEEECCEEEEEcC---------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCC--CcEEECCEEEEE
Confidence              011234455777665332         12355555543  35776433322110  00000000  011246788886


Q ss_pred             eCCCCeEEEEECCCCcEE
Q 015502          359 SYGAPSLLVYDMNLKQWR  376 (405)
Q Consensus       359 ~~~~~~~~~Yd~~~~~w~  376 (405)
                      . ....+.++|+++++-.
T Consensus       246 ~-~~g~l~~~d~~tG~~~  262 (376)
T 3q7m_A          246 A-YNGNLTALDLRSGQIM  262 (376)
T ss_dssp             C-TTSCEEEEETTTCCEE
T ss_pred             e-cCcEEEEEECCCCcEE
Confidence            5 3568999999888543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=93.14  E-value=5.3  Score=36.90  Aligned_cols=136  Identities=14%  Similarity=0.148  Sum_probs=62.3

Q ss_pred             EEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccc
Q 015502          207 SIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALT  286 (405)
Q Consensus       207 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~  286 (405)
                      .+.+||..++.=...    ..........+..++...+.+...        ..|..||+.+.+-.       ........
T Consensus       277 ~i~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~-------~~~~~h~~  337 (435)
T 1p22_A          277 TIKVWNTSTCEFVRT----LNGHKRGIACLQYRDRLVVSGSSD--------NTIRLWDIECGACL-------RVLEGHEE  337 (435)
T ss_dssp             EEEEEETTTCCEEEE----EECCSSCEEEEEEETTEEEEEETT--------SCEEEEETTTCCEE-------EEECCCSS
T ss_pred             eEEEEECCcCcEEEE----EcCCCCcEEEEEeCCCEEEEEeCC--------CeEEEEECCCCCEE-------EEEeCCcC
Confidence            788999876532111    111111112334455555555332        47999999876521       11111111


Q ss_pred             cCceEEeCCcEEEEEccccccccCccceEEEEEEeCce-------eEEEeccChhHHhccCCCCceeEEeeCCCEEEEEe
Q 015502          287 CGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKE-------WQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQS  359 (405)
Q Consensus       287 ~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~-------W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  359 (405)
                      ....+..+|+++++++.+        ..+.+|++....       ...+..+.       +....+.++...++.+.. .
T Consensus       338 ~v~~~~~~~~~l~sg~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~l~s-~  401 (435)
T 1p22_A          338 LVRCIRFDNKRIVSGAYD--------GKIKVWDLVAALDPRAPAGTLCLRTLV-------EHSGRVFRLQFDEFQIVS-S  401 (435)
T ss_dssp             CEEEEECCSSEEEEEETT--------SCEEEEEHHHHTSTTSCTTTTEEEEEC-------CCSSCCCCEEECSSCEEE-C
T ss_pred             cEEEEEecCCEEEEEeCC--------CcEEEEECCCCCCccccccchheeecc-------CCCCCeEEEEeCCCEEEE-E
Confidence            122234477777666532        459999987421       11111111       011123333335555444 3


Q ss_pred             CCCCeEEEEECCCCcEEE
Q 015502          360 YGAPSLLVYDMNLKQWRW  377 (405)
Q Consensus       360 ~~~~~~~~Yd~~~~~w~~  377 (405)
                      ..+..+.+||+.++.-..
T Consensus       402 s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          402 SHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             CSSSEEEEEC--------
T ss_pred             eCCCEEEEEECCCCCCcc
Confidence            457799999998875433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=92.87  E-value=1.1  Score=38.62  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=70.8

Q ss_pred             EECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEE
Q 015502          237 ICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIG  316 (405)
Q Consensus       237 ~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~  316 (405)
                      +.+|.+|.-++..      ....|..+|+++.+-.     ..++++.....-.+...+++||++.-..        ..+.
T Consensus        50 ~~~~~LyestG~~------g~S~v~~vD~~Tgkv~-----~~~~l~~~~FgeGit~~g~~ly~ltw~~--------~~v~  110 (262)
T 3nol_A           50 YRNGYFYESTGLN------GRSSIRKVDIESGKTL-----QQIELGKRYFGEGISDWKDKIVGLTWKN--------GLGF  110 (262)
T ss_dssp             EETTEEEEEEEET------TEEEEEEECTTTCCEE-----EEEECCTTCCEEEEEEETTEEEEEESSS--------SEEE
T ss_pred             EECCEEEEECCCC------CCceEEEEECCCCcEE-----EEEecCCccceeEEEEeCCEEEEEEeeC--------CEEE
Confidence            4478888887643      2358999999998743     2345555444445777899999997522        3355


Q ss_pred             EEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015502          317 IWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR  376 (405)
Q Consensus       317 vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~  376 (405)
                      ++  |...-+.+.+++...        ...++...++.+|+.. ....+.++|+++.+..
T Consensus       111 v~--D~~t~~~~~ti~~~~--------eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~  159 (262)
T 3nol_A          111 VW--NIRNLRQVRSFNYDG--------EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPV  159 (262)
T ss_dssp             EE--ETTTCCEEEEEECSS--------CCCCEEECSSCEEECC-SSSEEEEECTTTCSEE
T ss_pred             EE--ECccCcEEEEEECCC--------CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEE
Confidence            55  444444555554321        1235556788888876 4678999999986543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=92.72  E-value=5.7  Score=36.18  Aligned_cols=191  Identities=11%  Similarity=0.009  Sum_probs=90.7

Q ss_pred             CceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015502          135 YGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD  214 (405)
Q Consensus       135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~  214 (405)
                      ++.++..+.  .+.+++||..+++...+-...  .  ......+.+.+. +.+  +++++.         .-.+.+|+..
T Consensus       103 ~~~l~~~~~--d~~v~lw~~~~~~~~~~~~~~--~--~~~v~~v~~s~~-~~~--l~~~~~---------dg~i~iwd~~  164 (401)
T 4aez_A          103 NLNVVAVAL--ERNVYVWNADSGSVSALAETD--E--STYVASVKWSHD-GSF--LSVGLG---------NGLVDIYDVE  164 (401)
T ss_dssp             TTSEEEEEE--TTEEEEEETTTCCEEEEEECC--T--TCCEEEEEECTT-SSE--EEEEET---------TSCEEEEETT
T ss_pred             CCCEEEEEC--CCeEEEeeCCCCcEeEeeecC--C--CCCEEEEEECCC-CCE--EEEECC---------CCeEEEEECc
Confidence            344444333  478999999999877654332  1  112234555553 233  333331         1268889887


Q ss_pred             CCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceEE-
Q 015502          215 TMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLMN-  292 (405)
Q Consensus       215 ~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~-  292 (405)
                      ++.-...    ..........+..++.+.+.+...        ..+..+|+.+..-.      .......... ..+.. 
T Consensus       165 ~~~~~~~----~~~~~~~v~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~------~~~~~~~~~~v~~~~~~  226 (401)
T 4aez_A          165 SQTKLRT----MAGHQARVGCLSWNRHVLSSGSRS--------GAIHHHDVRIANHQ------IGTLQGHSSEVCGLAWR  226 (401)
T ss_dssp             TCCEEEE----ECCCSSCEEEEEEETTEEEEEETT--------SEEEEEETTSSSCE------EEEEECCSSCEEEEEEC
T ss_pred             CCeEEEE----ecCCCCceEEEEECCCEEEEEcCC--------CCEEEEecccCcce------eeEEcCCCCCeeEEEEc
Confidence            6643221    111111122344455555555332        47999999754311      1111111111 11222 


Q ss_pred             eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC--CCCeEEEEEC
Q 015502          293 LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY--GAPSLLVYDM  370 (405)
Q Consensus       293 ~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~Yd~  370 (405)
                      -+|+++++++.+        ..+.+|++...+=.....-.....       ..+++...++.+++...  .+..+.+||+
T Consensus       227 ~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~v-------~~~~~~p~~~~ll~~~~gs~d~~i~i~d~  291 (401)
T 4aez_A          227 SDGLQLASGGND--------NVVQIWDARSSIPKFTKTNHNAAV-------KAVAWCPWQSNLLATGGGTMDKQIHFWNA  291 (401)
T ss_dssp             TTSSEEEEEETT--------SCEEEEETTCSSEEEEECCCSSCC-------CEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred             CCCCEEEEEeCC--------CeEEEccCCCCCccEEecCCcceE-------EEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence            256776666532        459999988643221111000000       11233333444444432  4667888888


Q ss_pred             CCCcEE
Q 015502          371 NLKQWR  376 (405)
Q Consensus       371 ~~~~w~  376 (405)
                      ++++-.
T Consensus       292 ~~~~~~  297 (401)
T 4aez_A          292 ATGARV  297 (401)
T ss_dssp             TTCCEE
T ss_pred             CCCCEE
Confidence            877543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=92.72  E-value=5  Score=35.54  Aligned_cols=75  Identities=11%  Similarity=0.240  Sum_probs=47.4

Q ss_pred             eCCc-EEEEEccccccccCccceEEEEEEeC-ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE--
Q 015502          293 LKEK-LVMVGGIGKQDRPDIIKGIGIWVLNG-KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY--  368 (405)
Q Consensus       293 ~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~-~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y--  368 (405)
                      -+|+ ||+....        ...+.+|+++. +.++.+..++..     +....-+++...|+.+|+.......+.+|  
T Consensus       249 pdG~~l~v~~~~--------~~~v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          249 HDGHFLYVSNRG--------YNTLAVFAVTADGHLTLIQQISTE-----GDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             TTSCEEEEEEET--------TTEEEEEEECGGGCEEEEEEEECS-----SSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEeCC--------CCEEEEEEECCCCcEEEeEEEecC-----CCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            4576 5555432        24699999984 466666554421     01112345567788899987666778888  


Q ss_pred             ECCCCcEEEccC
Q 015502          369 DMNLKQWRWSHK  380 (405)
Q Consensus       369 d~~~~~w~~l~~  380 (405)
                      |.++++.+.+..
T Consensus       316 d~~tg~l~~~~~  327 (347)
T 3hfq_A          316 DLTSGKLSLLQK  327 (347)
T ss_dssp             CTTTCCEEEEEE
T ss_pred             eCCCCeEEeccc
Confidence            778888887653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=92.60  E-value=4.9  Score=35.07  Aligned_cols=198  Identities=11%  Similarity=0.038  Sum_probs=92.9

Q ss_pred             ecCceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015502          133 SSYGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY  211 (405)
Q Consensus       133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy  211 (405)
                      +.+|-++..+.  .+.+.+||..+++... +....... .......+.+.+.. .+  +++++.         .-.+.+|
T Consensus        60 ~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~--l~~~~~---------d~~i~~~  124 (337)
T 1gxr_A           60 SNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLN-RDNYIRSCKLLPDG-CT--LIVGGE---------ASTLSIW  124 (337)
T ss_dssp             CSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSC-TTSBEEEEEECTTS-SE--EEEEES---------SSEEEEE
T ss_pred             ecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccC-CCCcEEEEEEcCCC-CE--EEEEcC---------CCcEEEE
Confidence            34555544443  4788999988765322 11111000 11123345555532 22  333321         1378899


Q ss_pred             eCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015502          212 DSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR  289 (405)
Q Consensus       212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~  289 (405)
                      +..++.......  ..........+..  +|...+.+...        ..+..||+.+.+...     .+..... ....
T Consensus       125 d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~-----~~~~~~~-~i~~  188 (337)
T 1gxr_A          125 DLAAPTPRIKAE--LTSSAPACYALAISPDSKVCFSCCSD--------GNIAVWDLHNQTLVR-----QFQGHTD-GASC  188 (337)
T ss_dssp             ECCCC--EEEEE--EECSSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTTEEEE-----EECCCSS-CEEE
T ss_pred             ECCCCCcceeee--cccCCCceEEEEECCCCCEEEEEeCC--------CcEEEEeCCCCceee-----eeecccC-ceEE
Confidence            988776433211  1111111112222  45555554322        368899998765321     1111110 1111


Q ss_pred             eEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEE
Q 015502          290 LMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVY  368 (405)
Q Consensus       290 l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Y  368 (405)
                      +.. -+|++++++..        ...+.+|++...+-......+...        ..+.+...++.+++.. .+..+.+|
T Consensus       189 ~~~~~~~~~l~~~~~--------dg~i~~~d~~~~~~~~~~~~~~~v--------~~~~~s~~~~~l~~~~-~~~~i~~~  251 (337)
T 1gxr_A          189 IDISNDGTKLWTGGL--------DNTVRSWDLREGRQLQQHDFTSQI--------FSLGYCPTGEWLAVGM-ESSNVEVL  251 (337)
T ss_dssp             EEECTTSSEEEEEET--------TSEEEEEETTTTEEEEEEECSSCE--------EEEEECTTSSEEEEEE-TTSCEEEE
T ss_pred             EEECCCCCEEEEEec--------CCcEEEEECCCCceEeeecCCCce--------EEEEECCCCCEEEEEc-CCCcEEEE
Confidence            222 25666666543        245999988865433222221110        1123344566666654 45689999


Q ss_pred             ECCCCcEEEc
Q 015502          369 DMNLKQWRWS  378 (405)
Q Consensus       369 d~~~~~w~~l  378 (405)
                      |+++++-..+
T Consensus       252 ~~~~~~~~~~  261 (337)
T 1gxr_A          252 HVNKPDKYQL  261 (337)
T ss_dssp             ETTSSCEEEE
T ss_pred             ECCCCCeEEE
Confidence            9998875544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=91.99  E-value=6.6  Score=35.18  Aligned_cols=210  Identities=10%  Similarity=0.020  Sum_probs=95.8

Q ss_pred             ecCceEEEEeCCCCceEEEEeCcccceeeccCCC-CCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015502          133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPP-GLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY  211 (405)
Q Consensus       133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~-~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy  211 (405)
                      +.++.++....  .+.+.|||..+++........ ..+.  -....+.+.+.. .  .++.++.         ...+.+|
T Consensus        91 s~d~~l~~~s~--dg~v~lWd~~~~~~~~~~~~~~~~H~--~~V~~v~~spdg-~--~l~sgs~---------d~~i~iw  154 (344)
T 4gqb_B           91 VGERGILVASD--SGAVELWELDENETLIVSKFCKYEHD--DIVSTVSVLSSG-T--QAVSGSK---------DICIKVW  154 (344)
T ss_dssp             ETTTEEEEEET--TSEEEEEEECTTSSCEEEEEEEECCS--SCEEEEEECTTS-S--EEEEEET---------TSCEEEE
T ss_pred             eCCCeEEEEEC--CCEEEEEeccCCCceeEeeccccCCC--CCEEEEEECCCC-C--EEEEEeC---------CCeEEEE
Confidence            34566555443  478999999988765433211 0111  112344454433 2  3333332         1368889


Q ss_pred             eCCCCCcccccccccccccCCCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccC
Q 015502          212 DSDTMMWVTSWKEVLTGWRAGDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCG  288 (405)
Q Consensus       212 ~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~  288 (405)
                      |..++.=...    ..........+.+  ++ .+.+-+..        ...|..+|+.+.+-..     .+.........
T Consensus       155 d~~~~~~~~~----~~~h~~~V~~~~~~~~~~~~l~s~s~--------D~~v~iwd~~~~~~~~-----~~~~~~~~~~~  217 (344)
T 4gqb_B          155 DLAQQVVLSS----YRAHAAQVTCVAASPHKDSVFLSCSE--------DNRILLWDTRCPKPAS-----QIGCSAPGYLP  217 (344)
T ss_dssp             ETTTTEEEEE----ECCCSSCEEEEEECSSCTTEEEEEET--------TSCEEEEETTSSSCEE-----ECC----CCCE
T ss_pred             ECCCCcEEEE----EcCcCCceEEEEecCCCCCceeeecc--------ccccccccccccceee-----eeecceeeccc
Confidence            8876532110    1111111112222  23 23333322        1368889998766221     11111111111


Q ss_pred             -ceEE--eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCC
Q 015502          289 -RLMN--LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAP  363 (405)
Q Consensus       289 -~l~~--~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~  363 (405)
                       .+..  .++++++.+..+        ..+.+|++...+=..  .+.       +....+.++  ...+..+++....+.
T Consensus       218 ~~~~~~p~~~~~l~sg~~d--------g~v~~wd~~~~~~~~--~~~-------~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDEN--------GTVSLVDTKSTSCVL--SSA-------VHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             EEEEECSSCTTEEEEEETT--------SEEEEEESCC--CCE--EEE-------CCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             eeeeecCCCCcceEEeccC--------CcEEEEECCCCcEEE--EEc-------CCCCCEEEEEEccCCCeEEEEEeCCC
Confidence             1222  245677666532        459999887543111  110       001123332  334544444444567


Q ss_pred             eEEEEECCCCcEEEccCCCCCCCCcccceeeeeece
Q 015502          364 SLLVYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEP  399 (405)
Q Consensus       364 ~~~~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p  399 (405)
                      .+.+||+++++...+.    .|.   ....+++|.|
T Consensus       281 ~i~vwd~~~~~~~~~~----~H~---~~V~~v~~sp  309 (344)
T 4gqb_B          281 SLAVLDSSLSELFRSQ----AHR---DFVRDATWSP  309 (344)
T ss_dssp             CEEEECTTCCEEEEEC----CCS---SCEEEEEECS
T ss_pred             eEEEEECCCCcEEEEc----CCC---CCEEEEEEeC
Confidence            8999999988755432    122   2245667765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.69  E-value=1.3  Score=38.21  Aligned_cols=108  Identities=11%  Similarity=-0.026  Sum_probs=69.2

Q ss_pred             EECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEE
Q 015502          237 ICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIG  316 (405)
Q Consensus       237 ~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~  316 (405)
                      +.++.+|.-++..        ..|..+|+++.+-..     .+ +|.....-.+...+++||+++...        ..+ 
T Consensus        62 ~~~~~Ly~stG~~--------g~v~~iD~~Tgkv~~-----~~-l~~~~FgeGit~~g~~Ly~ltw~~--------~~v-  118 (268)
T 3nok_A           62 FHQGHFFESTGHQ--------GTLRQLSLESAQPVW-----ME-RLGNIFAEGLASDGERLYQLTWTE--------GLL-  118 (268)
T ss_dssp             EETTEEEEEETTT--------TEEEECCSSCSSCSE-----EE-ECTTCCEEEEEECSSCEEEEESSS--------CEE-
T ss_pred             EECCEEEEEcCCC--------CEEEEEECCCCcEEe-----EE-CCCCcceeEEEEeCCEEEEEEccC--------CEE-
Confidence            4478888877432        249999999988432     23 554443345777889999987421        234 


Q ss_pred             EEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015502          317 IWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW  377 (405)
Q Consensus       317 vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~  377 (405)
                       |..|...-+.+.+++..   .     ...++...++.+|+.. ....+.++|+++.+...
T Consensus       119 -~V~D~~Tl~~~~ti~~~---~-----eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~  169 (268)
T 3nok_A          119 -FTWSGMPPQRERTTRYS---G-----EGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVG  169 (268)
T ss_dssp             -EEEETTTTEEEEEEECS---S-----CCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEE
T ss_pred             -EEEECCcCcEEEEEeCC---C-----ceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEE
Confidence             44455555555555431   0     1235556788888886 47899999999976543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=91.38  E-value=7.1  Score=34.38  Aligned_cols=226  Identities=12%  Similarity=0.026  Sum_probs=112.2

Q ss_pred             eeEEecCCCCeeee-ccCCCCCCCCeEEEe-cCceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCC---CccceeEE
Q 015502          105 IGYAYDPILRKWYG-IELPCIETSNWFIAS-SYGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKF---SDYSALSL  178 (405)
Q Consensus       105 ~~~~~d~~~~~w~~-~~~p~~~~~~~~~~s-~~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~---~~~~~~~~  178 (405)
                      ....+|+..++... ++....  ...+.-+ .+..+++... ....+.++|+.+++... ++.......   .......+
T Consensus        70 ~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQAIHNDLK--PFGATINNTTQTLWFGNT-VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL  146 (353)
T ss_dssp             EEEEECTTTCCEEEEEEESSC--CCSEEEETTTTEEEEEET-TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE
T ss_pred             cEEEEcCCCCeEEEEEecCCC--cceEEECCCCCEEEEEec-CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE
Confidence            45667776654322 222211  1223333 4455666544 24689999999987643 332111110   01112345


Q ss_pred             EEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE-Cc-EEEeeEEecCCCCCCC
Q 015502          179 SVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC-DG-VLYFLIYATGGGAPEN  256 (405)
Q Consensus       179 ~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~-~g-~iy~l~~~~~~~~~~~  256 (405)
                      .+++..+ + +++.....        ...+.+||..++.=.... +. .. .......+. +| .+|+...         
T Consensus       147 ~~s~dg~-~-l~~~~~~~--------~~~i~~~d~~~~~~~~~~-~~-~~-~~~~~~~~s~dg~~l~~~~~---------  204 (353)
T 3vgz_A          147 VADDATN-T-VYISGIGK--------ESVIWVVDGGNIKLKTAI-QN-TG-KMSTGLALDSEGKRLYTTNA---------  204 (353)
T ss_dssp             EEETTTT-E-EEEEEESS--------SCEEEEEETTTTEEEEEE-CC-CC-TTCCCCEEETTTTEEEEECT---------
T ss_pred             EECCCCC-E-EEEEecCC--------CceEEEEcCCCCceEEEe-cC-CC-CccceEEECCCCCEEEEEcC---------
Confidence            5666543 2 44433211        136888988655422110 00 11 111122222 44 4555432         


Q ss_pred             ccEEEEEECCCCcchhhhcccccccCCcc---ccCceEE-eCCc-EEEEEccccccccCccceEEEEEEeCceeEEEecc
Q 015502          257 RHGLISFNLSSRSSHALLIKSFIPVPCAL---TCGRLMN-LKEK-LVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARM  331 (405)
Q Consensus       257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~---~~~~l~~-~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i  331 (405)
                      ...+..||+.+.+-..     .+..+...   ....+.. -+|+ ||+....        ...+.+|+++..+-.....+
T Consensus       205 ~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          205 DGELITIDTADNKILS-----RKKLLDDGKEHFFINISLDTARQRAFITDSK--------AAEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             TSEEEEEETTTTEEEE-----EEECCCSSSCCCEEEEEEETTTTEEEEEESS--------SSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCeEEE-----EEEcCCCCCCcccceEEECCCCCEEEEEeCC--------CCEEEEEECCCCcEEEEEEc
Confidence            2478899998876321     12221110   1111333 3455 6555431        24588888776554433333


Q ss_pred             ChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015502          332 PHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW  377 (405)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~  377 (405)
                      +..         ..+++...++.+|+.......+.+||+++++...
T Consensus       272 ~~~---------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          272 PES---------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             SSC---------CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCC---------ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            221         1245566788899987667899999999887654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=90.69  E-value=7.8  Score=33.64  Aligned_cols=199  Identities=8%  Similarity=0.034  Sum_probs=97.3

Q ss_pred             CceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCC
Q 015502          135 YGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSD  214 (405)
Q Consensus       135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~  214 (405)
                      +|.|+..+.. ...++.+||.+++...+....       ...++..++..+   +++..           ...+.+|+..
T Consensus        24 ~~~l~~~d~~-~~~i~~~d~~~~~~~~~~~~~-------~~~~i~~~~dG~---l~v~~-----------~~~l~~~d~~   81 (297)
T 3g4e_A           24 SNSLLFVDIP-AKKVCRWDSFTKQVQRVTMDA-------PVSSVALRQSGG---YVATI-----------GTKFCALNWK   81 (297)
T ss_dssp             TTEEEEEETT-TTEEEEEETTTCCEEEEECSS-------CEEEEEEBTTSS---EEEEE-----------TTEEEEEETT
T ss_pred             CCEEEEEECC-CCEEEEEECCCCcEEEEeCCC-------ceEEEEECCCCC---EEEEE-----------CCeEEEEECC
Confidence            4556665542 478899999998775543221       123455565543   33322           1267889988


Q ss_pred             CCCcccccccccccccCCCccEEE--CcEEEeeEEecCCC---CCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015502          215 TMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGG---APENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR  289 (405)
Q Consensus       215 ~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~---~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~  289 (405)
                      ++..+................+.+  +|.+|+-....+..   .......|..+|+.... ..+  ......|     ..
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~--~~~~~~p-----ng  153 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKY--FDQVDIS-----NG  153 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEE--EEEESBE-----EE
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEE--eeccccc-----cc
Confidence            887755422100000000122333  68877644321100   01223578889886332 110  0011111     12


Q ss_pred             eEE-eCCc-EEEEEccccccccCccceEEEEEEe--CceeE---EEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC
Q 015502          290 LMN-LKEK-LVMVGGIGKQDRPDIIKGIGIWVLN--GKEWQ---EVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA  362 (405)
Q Consensus       290 l~~-~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~--~~~W~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  362 (405)
                      ++. -+|+ ||++...        ...+.+|.++  ++...   .+..++...     ....-+++.. ++.||+.....
T Consensus       154 i~~spdg~~lyv~~~~--------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-----~~p~g~~~d~-~G~lwva~~~~  219 (297)
T 3g4e_A          154 LDWSLDHKIFYYIDSL--------SYSVDAFDYDLQTGQISNRRSVYKLEKEE-----QIPDGMCIDA-EGKLWVACYNG  219 (297)
T ss_dssp             EEECTTSCEEEEEEGG--------GTEEEEEEECTTTCCEEEEEEEEECCGGG-----CEEEEEEEBT-TSCEEEEEETT
T ss_pred             eEEcCCCCEEEEecCC--------CCcEEEEeccCCCCcccCcEEEEECCCCC-----CCCCeeEECC-CCCEEEEEcCC
Confidence            333 2454 7766642        2457888875  33332   122333210     0011223333 44678876555


Q ss_pred             CeEEEEECCCCcEEE
Q 015502          363 PSLLVYDMNLKQWRW  377 (405)
Q Consensus       363 ~~~~~Yd~~~~~w~~  377 (405)
                      ..+.+||+++++...
T Consensus       220 ~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             TEEEEECTTTCCEEE
T ss_pred             CEEEEEcCCCceEEE
Confidence            689999999876644

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=90.39  E-value=2.1  Score=37.10  Aligned_cols=108  Identities=15%  Similarity=0.112  Sum_probs=67.4

Q ss_pred             cEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEE
Q 015502          240 GVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWV  319 (405)
Q Consensus       240 g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~  319 (405)
                      |.+|.-.+..      ....|..+|+.+.+-.     ..++++.....-.+...+++||+..-.        ...+.|+ 
T Consensus        32 g~Lyvstg~~------~~s~v~~iD~~tg~v~-----~~i~l~~~~fgeGi~~~g~~lyv~t~~--------~~~v~vi-   91 (266)
T 2iwa_A           32 DTLFESTGLY------GRSSVRQVALQTGKVE-----NIHKMDDSYFGEGLTLLNEKLYQVVWL--------KNIGFIY-   91 (266)
T ss_dssp             TEEEEEECST------TTCEEEEEETTTCCEE-----EEEECCTTCCEEEEEEETTEEEEEETT--------CSEEEEE-
T ss_pred             CeEEEECCCC------CCCEEEEEECCCCCEE-----EEEecCCCcceEEEEEeCCEEEEEEec--------CCEEEEE-
Confidence            7888876421      2358999999998733     234444433333466678899988742        2335555 


Q ss_pred             EeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015502          320 LNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR  376 (405)
Q Consensus       320 l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~  376 (405)
                       |....+.+.+++..  .     ....++...|+.+|+.. ....+.++|+++.+-.
T Consensus        92 -D~~t~~v~~~i~~g--~-----~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~  139 (266)
T 2iwa_A           92 -DRRTLSNIKNFTHQ--M-----KDGWGLATDGKILYGSD-GTSILYEIDPHTFKLI  139 (266)
T ss_dssp             -ETTTTEEEEEEECC--S-----SSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEE
T ss_pred             -ECCCCcEEEEEECC--C-----CCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEE
Confidence             44444555555432  1     11245566788899876 5789999999997543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=89.38  E-value=8.9  Score=32.31  Aligned_cols=190  Identities=11%  Similarity=0.078  Sum_probs=97.3

Q ss_pred             EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015502          130 FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH  209 (405)
Q Consensus       130 ~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~  209 (405)
                      +.-..+|.+++.+.  ...++++|+.++....++....     ....++..++..   ++++....         ...+.
T Consensus        72 i~~~~~g~l~v~~~--~~~i~~~d~~~~~~~~~~~~~~-----~~p~~i~~~~~g---~l~v~~~~---------~~~i~  132 (270)
T 1rwi_B           72 LAVDGAGTVYVTDF--NNRVVTLAAGSNNQTVLPFDGL-----NYPEGLAVDTQG---AVYVADRG---------NNRVV  132 (270)
T ss_dssp             EEECTTCCEEEEET--TTEEEEECTTCSCCEECCCCSC-----SSEEEEEECTTC---CEEEEEGG---------GTEEE
T ss_pred             eEECCCCCEEEEcC--CCEEEEEeCCCceEeeeecCCc-----CCCcceEECCCC---CEEEEECC---------CCEEE
Confidence            44445677777664  4789999998877665542210     122456666643   35554321         12677


Q ss_pred             EEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015502          210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC  287 (405)
Q Consensus       210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~  287 (405)
                      +|+.++........   .... ....+.+  +|.+|+....        ...|..||+.+.....      .........
T Consensus       133 ~~~~~~~~~~~~~~---~~~~-~p~~i~~~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~------~~~~~~~~p  194 (270)
T 1rwi_B          133 KLAAGSKTQTVLPF---TGLN-DPDGVAVDNSGNVYVTDTD--------NNRVVKLEAESNNQVV------LPFTDITAP  194 (270)
T ss_dssp             EECTTCCSCEECCC---CSCC-SCCCEEECTTCCEEEEEGG--------GTEEEEECTTTCCEEE------CCCSSCCSE
T ss_pred             EEECCCceeEeecc---ccCC-CceeEEEeCCCCEEEEECC--------CCEEEEEecCCCceEe------ecccCCCCc
Confidence            77765544332111   1111 1123444  6888876532        2479999988765221      111110111


Q ss_pred             CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCCe
Q 015502          288 GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAPS  364 (405)
Q Consensus       288 ~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~  364 (405)
                      ..++. .+|.||+....        ...+.+|..+...-..   ++.   ..+   ..+.++  ...| .+|+.......
T Consensus       195 ~~i~~d~~g~l~v~~~~--------~~~v~~~~~~~~~~~~---~~~---~~~---~~p~~i~~~~~g-~l~v~~~~~~~  256 (270)
T 1rwi_B          195 WGIAVDEAGTVYVTEHN--------TNQVVKLLAGSTTSTV---LPF---TGL---NTPLAVAVDSDR-TVYVADRGNDR  256 (270)
T ss_dssp             EEEEECTTCCEEEEETT--------TSCEEEECTTCSCCEE---CCC---CSC---SCEEEEEECTTC-CEEEEEGGGTE
T ss_pred             eEEEECCCCCEEEEECC--------CCcEEEEcCCCCccee---ecc---CCC---CCceeEEECCCC-CEEEEECCCCE
Confidence            12333 35788887742        1346666655432111   110   000   122333  3344 58887766778


Q ss_pred             EEEEECCCCc
Q 015502          365 LLVYDMNLKQ  374 (405)
Q Consensus       365 ~~~Yd~~~~~  374 (405)
                      +.+|++..++
T Consensus       257 v~~~~~~~~~  266 (270)
T 1rwi_B          257 VVKLTSLEHH  266 (270)
T ss_dssp             EEEECCCGGG
T ss_pred             EEEEcCCCcc
Confidence            9999987654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=88.09  E-value=13  Score=32.44  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=28.9

Q ss_pred             ceEEEEEEeCceeEEEeccChhHHhccCCCCceeEE--eeCCCEEEEEeCCCCeEEEEECCCCc
Q 015502          313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFAS--SGTDDLIYIQSYGAPSLLVYDMNLKQ  374 (405)
Q Consensus       313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Yd~~~~~  374 (405)
                      ..+.+|+++...-.....-+.......+....+.++  ...++.|+.. ..+..+.+||+++++
T Consensus       277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG-YTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE-ETTSCEEEEEEEC--
T ss_pred             CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEeCCCcC
Confidence            458999887654222211111111000111233333  3456655543 457789999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=87.95  E-value=15  Score=33.20  Aligned_cols=223  Identities=10%  Similarity=0.005  Sum_probs=104.8

Q ss_pred             CceEEEEeCCCCceEEEEeCcccceeecc-CCC-CCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015502          135 YGLVCFMDNDSRSELYVCNPISKSWKKLE-EPP-GLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD  212 (405)
Q Consensus       135 ~Gll~~~~~~~~~~~~v~NP~T~~~~~lP-~~~-~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~  212 (405)
                      +|-+++.+. .+..+.|||..++....-. .+. ...........+.+.+....+ ++. ++.         ...+.+||
T Consensus        93 ~~~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-l~s-~~~---------dg~i~iwd  160 (402)
T 2aq5_A           93 NDNVIASGS-EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV-LLS-AGC---------DNVILVWD  160 (402)
T ss_dssp             CTTEEEEEE-TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTE-EEE-EET---------TSCEEEEE
T ss_pred             CCCEEEEEe-CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCE-EEE-EcC---------CCEEEEEE
Confidence            444444332 2478999999887542211 000 000011122344555543233 333 321         12688999


Q ss_pred             CCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccc-ccCCccccCc
Q 015502          213 SDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFI-PVPCALTCGR  289 (405)
Q Consensus       213 s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~-~~p~~~~~~~  289 (405)
                      ..++.....-.  ..........+..  +|...+.+...        ..|..||+.+.+-..     .+ ..........
T Consensus       161 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~  225 (402)
T 2aq5_A          161 VGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD--------KRVRVIEPRKGTVVA-----EKDRPHEGTRPVH  225 (402)
T ss_dssp             TTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT--------SEEEEEETTTTEEEE-----EEECSSCSSSCCE
T ss_pred             CCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC--------CcEEEEeCCCCceee-----eeccCCCCCcceE
Confidence            87765422110  0111111122323  55555544322        479999998765221     11 1111111122


Q ss_pred             eE-EeCCcEEEEEccccccccCccceEEEEEEeCcee-EEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEE
Q 015502          290 LM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEW-QEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLV  367 (405)
Q Consensus       290 l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  367 (405)
                      +. .-+|++++++....     ....+.+|++...+- .....++..      ..-..+.+...++.+++....+..+.+
T Consensus       226 ~~~~~~~~~l~~g~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~g~~dg~i~i  294 (402)
T 2aq5_A          226 AVFVSEGKILTTGFSRM-----SERQVALWDTKHLEEPLSLQELDTS------SGVLLPFFDPDTNIVYLCGKGDSSIRY  294 (402)
T ss_dssp             EEECSTTEEEEEEECTT-----CCEEEEEEETTBCSSCSEEEECCCC------SSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred             EEEcCCCcEEEEeccCC-----CCceEEEEcCccccCCceEEeccCC------CceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence            22 23577766652100     135699998875321 112222210      000122345678888887766789999


Q ss_pred             EECCCCc--EEEccCCCCCCCCcccceeeeeecee
Q 015502          368 YDMNLKQ--WRWSHKCPVTKRFPLQLFTGFCFEPR  400 (405)
Q Consensus       368 Yd~~~~~--w~~l~~~p~~~~~~~~~~~~~~~~p~  400 (405)
                      ||+++++  ...+.....     .....+++|.|.
T Consensus       295 ~d~~~~~~~~~~l~~~~~-----~~~v~~~~~sp~  324 (402)
T 2aq5_A          295 FEITSEAPFLHYLSMFSS-----KESQRGMGYMPK  324 (402)
T ss_dssp             EEECSSTTCEEEEEEECC-----SSCCSEEEECCG
T ss_pred             EEecCCCcceEeeccccc-----CCcccceEEecc
Confidence            9999987  555543321     112446666654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=87.79  E-value=16  Score=33.35  Aligned_cols=107  Identities=11%  Similarity=0.077  Sum_probs=55.0

Q ss_pred             ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015502          133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD  212 (405)
Q Consensus       133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~  212 (405)
                      |.+++|.+. .  .+.++|||..|++...+-....   .......+.+.+.+ .|  +++++.         .-.+.+|+
T Consensus       114 S~~n~lAvg-l--d~tV~lWd~~tg~~~~~~~~~~---~~~~V~sv~fspdg-~~--lasgs~---------Dg~v~iWd  175 (420)
T 4gga_A          114 SSGNVLAVA-L--DNSVYLWSASSGDILQLLQMEQ---PGEYISSVAWIKEG-NY--LAVGTS---------SAEVQLWD  175 (420)
T ss_dssp             CTTSEEEEE-E--TTEEEEEETTTCCEEEEEECCS---TTCCEEEEEECTTS-SE--EEEEET---------TSCEEEEE
T ss_pred             CCCCEEEEE-e--CCEEEEEECCCCCEEEEEEecC---CCCcEEEEEECCCC-CE--EEEEEC---------CCeEEEEE
Confidence            445655443 3  3789999999998876543321   11122345555543 33  444432         13788999


Q ss_pred             CCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc
Q 015502          213 SDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS  269 (405)
Q Consensus       213 s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~  269 (405)
                      ..++.-...    .........++..++.+...+...        ..+..+|.....
T Consensus       176 ~~~~~~~~~----~~~h~~~v~~~s~~~~~l~sgs~d--------~~i~~~d~~~~~  220 (420)
T 4gga_A          176 VQQQKRLRN----MTSHSARVGSLSWNSYILSSGSRS--------GHIHHHDVRVAE  220 (420)
T ss_dssp             TTTTEEEEE----ECCCSSCEEEEEEETTEEEEEETT--------SEEEEEETTSSS
T ss_pred             cCCCcEEEE----EeCCCCceEEEeeCCCEEEEEeCC--------CceeEeeecccc
Confidence            876542111    111111112344456554444322        467778876554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=87.62  E-value=25  Score=35.29  Aligned_cols=185  Identities=11%  Similarity=0.099  Sum_probs=87.6

Q ss_pred             ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015502          147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL  226 (405)
Q Consensus       147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  226 (405)
                      +.+.|||..++.+..+..... +  ......+.+.+..+.-.++. ++.         .-.+.+|+..++.|.....  .
T Consensus        31 g~I~vwd~~~~~~~~~~~l~~-h--~~~V~~l~~s~~~~~~~l~s-~s~---------Dg~I~vwd~~~~~~~~~~~--~   95 (753)
T 3jro_A           31 KTIKIFEVEGETHKLIDTLTG-H--EGPVWRVDWAHPKFGTILAS-CSY---------DGKVLIWKEENGRWSQIAV--H   95 (753)
T ss_dssp             TEEEEEEEETTEEEEEEEECC-C--SSCEEEEEECCTTSCSEEEE-EET---------TSCEEEEEEETTEEEEEEE--E
T ss_pred             CcEEEEecCCCCCccceeccC-C--cCceEEEEecCCCCCCEEEE-EeC---------CCeEEEEECCCCccccccc--c
Confidence            667788877555544433321 1  11223444544321223333 321         1268889988877654321  1


Q ss_pred             ccccCCCccEEE--C--cEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceEEe--------
Q 015502          227 TGWRAGDESIIC--D--GVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLMNL--------  293 (405)
Q Consensus       227 ~~~~~~~~~v~~--~--g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~~--------  293 (405)
                      .........+..  +  |.+.+.+...        ..+..||+.+..-..     .......... ..+...        
T Consensus        96 ~~h~~~V~~v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~~~~~-----~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           96 AVHSASVNSVQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTTS-----PIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETT--------SEEEEEECCSSSCCC-----CEEEECCSSCEEEEEECCCC-----
T ss_pred             cCCCCCeEEEEECCCCCCCEEEEEeCC--------CcEEEEEeecCCCcc-----eeEeecCCCceEEEEecCccccccc
Confidence            111111122333  2  5555555332        478899987763211     0111110000 011111        


Q ss_pred             ------CCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEE--eeCC--CEEEEEeCC
Q 015502          294 ------KEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFAS--SGTD--DLIYIQSYG  361 (405)
Q Consensus       294 ------~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~--~~i~~~~~~  361 (405)
                            +|+++++++.+        ..+.+|++..  ..+..+..+...       ...+.++  ...+  +.+++....
T Consensus       163 ~~~~~~d~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~~~l~s~s~  227 (753)
T 3jro_A          163 EHNGTKESRKFVTGGAD--------NLVKIWKYNSDAQTYVLESTLEGH-------SDWVRDVAWSPTVLLRSYLASVSQ  227 (753)
T ss_dssp             ----CGGGCCEEEEETT--------SCEEEEEEETTTTEEEEEEEECCC-------SSCEEEEEECCCCSSSEEEEEEES
T ss_pred             ccccCCCCCEEEEEECC--------CeEEEEeccCCcccceeeeeecCC-------CCcEEEEEeccCCCCCCEEEEEec
Confidence                  35666665532        4599999985  355555444310       1123333  3341  444444445


Q ss_pred             CCeEEEEECCCCc
Q 015502          362 APSLLVYDMNLKQ  374 (405)
Q Consensus       362 ~~~~~~Yd~~~~~  374 (405)
                      +..+.+||+++++
T Consensus       228 Dg~I~iwd~~~~~  240 (753)
T 3jro_A          228 DRTCIIWTQDNEQ  240 (753)
T ss_dssp             SSCEEEEEESSSS
T ss_pred             CCEEEEecCCCCC
Confidence            7789999999863

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=87.27  E-value=15  Score=32.27  Aligned_cols=190  Identities=8%  Similarity=-0.012  Sum_probs=91.8

Q ss_pred             CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015502          146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV  225 (405)
Q Consensus       146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~  225 (405)
                      ...++++|+.|++....-+... .     ...+.+++..+ + +++....         ...+.+||..+++-...- +.
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~s~dg~-~-l~v~~~~---------~~~v~~~d~~~~~~~~~~-~~  129 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDL-K-----PFGATINNTTQ-T-LWFGNTV---------NSAVTAIDAKTGEVKGRL-VL  129 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-C-----CCSEEEETTTT-E-EEEEETT---------TTEEEEEETTTCCEEEEE-ES
T ss_pred             CccEEEEcCCCCeEEEEEecCC-C-----cceEEECCCCC-E-EEEEecC---------CCEEEEEeCCCCeeEEEE-ec
Confidence            3679999999987654322111 1     12344444432 2 4444321         137888988776532110 10


Q ss_pred             ccccc------CCCccEEE--Cc-EEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCC
Q 015502          226 LTGWR------AGDESIIC--DG-VLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKE  295 (405)
Q Consensus       226 ~~~~~------~~~~~v~~--~g-~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G  295 (405)
                      .....      .....+.+  +| .+|+.....       ...|..+|+.+.+-..     .++... .....+. .-+|
T Consensus       130 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~~~~-----~~~~~~-~~~~~~~~s~dg  196 (353)
T 3vgz_A          130 DDRKRTEEVRPLQPRELVADDATNTVYISGIGK-------ESVIWVVDGGNIKLKT-----AIQNTG-KMSTGLALDSEG  196 (353)
T ss_dssp             CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-------SCEEEEEETTTTEEEE-----EECCCC-TTCCCCEEETTT
T ss_pred             CCCccccccCCCCCceEEECCCCCEEEEEecCC-------CceEEEEcCCCCceEE-----EecCCC-CccceEEECCCC
Confidence            00000      00112333  44 466554211       2479999998776321     122111 1112233 3356


Q ss_pred             cEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015502          296 KLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW  375 (405)
Q Consensus       296 ~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w  375 (405)
                      +.+++...        ...+.+|++...+-......+..-..   ....-+++...++.+|+.......+.+||+++++.
T Consensus       197 ~~l~~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          197 KRLYTTNA--------DGELITIDTADNKILSRKKLLDDGKE---HFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             TEEEEECT--------TSEEEEEETTTTEEEEEEECCCSSSC---CCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred             CEEEEEcC--------CCeEEEEECCCCeEEEEEEcCCCCCC---cccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            54444432        13467777765432222222110000   00011345567888998876668999999998876


Q ss_pred             EE
Q 015502          376 RW  377 (405)
Q Consensus       376 ~~  377 (405)
                      ..
T Consensus       266 ~~  267 (353)
T 3vgz_A          266 LA  267 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=86.98  E-value=19  Score=33.16  Aligned_cols=112  Identities=13%  Similarity=0.214  Sum_probs=59.6

Q ss_pred             cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccce
Q 015502          235 SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKG  314 (405)
Q Consensus       235 ~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~  314 (405)
                      .+..+|...+.+...        ..+..||+.+.+-.       ............+..+|+++++++.+        ..
T Consensus       284 ~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~-------~~~~~~~~~v~~~~~~~~~l~~~~~d--------g~  340 (445)
T 2ovr_B          284 SLQFDGIHVVSGSLD--------TSIRVWDVETGNCI-------HTLTGHQSLTSGMELKDNILVSGNAD--------ST  340 (445)
T ss_dssp             EEEECSSEEEEEETT--------SCEEEEETTTCCEE-------EEECCCCSCEEEEEEETTEEEEEETT--------SC
T ss_pred             EEEECCCEEEEEeCC--------CeEEEEECCCCCEE-------EEEcCCcccEEEEEEeCCEEEEEeCC--------Ce
Confidence            344466665555432        46999999876621       11111111112234456666665532        45


Q ss_pred             EEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEE
Q 015502          315 IGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWR  376 (405)
Q Consensus       315 ~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~  376 (405)
                      +.+|++...+-......+..      ....+.++...++.++... .+..+.+||+++++..
T Consensus       341 i~vwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~  395 (445)
T 2ovr_B          341 VKIWDIKTGQCLQTLQGPNK------HQSAVTCLQFNKNFVITSS-DDGTVKLWDLKTGEFI  395 (445)
T ss_dssp             EEEEETTTCCEEEEECSTTS------CSSCEEEEEECSSEEEEEE-TTSEEEEEETTTCCEE
T ss_pred             EEEEECCCCcEEEEEccCCC------CCCCEEEEEECCCEEEEEe-CCCeEEEEECCCCcee
Confidence            99999876543222211110      0123444444566655544 5679999999988653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=86.83  E-value=16  Score=32.33  Aligned_cols=180  Identities=8%  Similarity=0.101  Sum_probs=81.9

Q ss_pred             CceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccc
Q 015502          146 RSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEV  225 (405)
Q Consensus       146 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~  225 (405)
                      ++.+.|||..++++.........+.  .....+.+.+.. .+  ++.++.         ...+.+|+..++.+.....  
T Consensus        37 D~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~g-~~--l~s~s~---------D~~v~iw~~~~~~~~~~~~--  100 (345)
T 3fm0_A           37 DRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSPCG-NY--LASASF---------DATTCIWKKNQDDFECVTT--  100 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECSSCS--SCEEEEEECTTS-SE--EEEEET---------TSCEEEEEECCC-EEEEEE--
T ss_pred             CCeEEEEEcCCCcceeeeeeccccC--CcEEEEEECCCC-CE--EEEEEC---------CCcEEEEEccCCCeEEEEE--
Confidence            3678889988877653321111111  122344555533 22  333332         1267788776665533211  


Q ss_pred             cccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccc-cCCccccC-ceE-EeCCcEEEE
Q 015502          226 LTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIP-VPCALTCG-RLM-NLKEKLVMV  300 (405)
Q Consensus       226 ~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~-~p~~~~~~-~l~-~~~G~L~~v  300 (405)
                      ..........+..  +|.+.+.+...        ..+..+|+.+..-..     .+. ........ .+. .-+|++++.
T Consensus       101 ~~~h~~~v~~v~~sp~~~~l~s~s~D--------~~v~iwd~~~~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A          101 LEGHENEVKSVAWAPSGNLLATCSRD--------KSVWVWEVDEEDEYE-----CVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEEECTTSCEE-----EEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             ccCCCCCceEEEEeCCCCEEEEEECC--------CeEEEEECCCCCCeE-----EEEEecCcCCCeEEEEECCCCCEEEE
Confidence            1111111112222  45544444322        368888886643110     011 11101111 122 124666655


Q ss_pred             EccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCeEEEEEC
Q 015502          301 GGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPSLLVYDM  370 (405)
Q Consensus       301 ~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~Yd~  370 (405)
                      +..+        ..+.+|++...+|..+..+...       ...+.+  +...++.+.... .+..+.+||.
T Consensus       168 ~s~d--------~~i~~w~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~  223 (345)
T 3fm0_A          168 ASYD--------DTVKLYREEEDDWVCCATLEGH-------ESTVWSLAFDPSGQRLASCS-DDRTVRIWRQ  223 (345)
T ss_dssp             EETT--------SCEEEEEEETTEEEEEEEECCC-------SSCEEEEEECTTSSEEEEEE-TTSCEEEEEE
T ss_pred             EeCC--------CcEEEEEecCCCEEEEEEecCC-------CCceEEEEECCCCCEEEEEe-CCCeEEEecc
Confidence            5432        4599999999888766554320       112222  233455444433 4567777775

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=86.77  E-value=19  Score=33.04  Aligned_cols=204  Identities=12%  Similarity=0.022  Sum_probs=104.6

Q ss_pred             ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015502          147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL  226 (405)
Q Consensus       147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  226 (405)
                      ..++++|..+++...+...+.      ....+.+.|++ .+ |++.+...  +     ...+.+|+..++.......   
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~------~~~~~~~spdg-~~-la~~~~~~--g-----~~~i~~~d~~~~~~~~l~~---  264 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR------HNGAPAFSPDG-SK-LAFALSKT--G-----SLNLYVMDLASGQIRQVTD---  264 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS------CEEEEEECTTS-SE-EEEEECTT--S-----SCEEEEEETTTCCEEECCC---
T ss_pred             cEEEEEECCCCcEEEeecCCC------cccCEEEcCCC-CE-EEEEEecC--C-----CceEEEEECCCCCEEeCcC---
Confidence            589999999998877654321      12344455543 23 33333211  1     2478899988776543221   


Q ss_pred             ccccCCCccEEE--CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEcc
Q 015502          227 TGWRAGDESIIC--DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGI  303 (405)
Q Consensus       227 ~~~~~~~~~v~~--~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~  303 (405)
                        .......+..  +|. |++.....      ....|..+|+.+.+-.      .+.........-...-+|+.+++...
T Consensus       265 --~~~~~~~~~~spdg~~l~~~s~~~------g~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          265 --GRSNNTEPTWFPDSQNLAFTSDQA------GRPQVYKVNINGGAPQ------RITWEGSQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             --CSSCEEEEEECTTSSEEEEEECTT------SSCEEEEEETTSSCCE------ECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             --CCCcccceEECCCCCEEEEEECCC------CCcEEEEEECCCCCEE------EEecCCCcccCeEECCCCCEEEEEEC
Confidence              0111112222  554 44443211      1247888999876532      11111111111112235665555432


Q ss_pred             ccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC--CeEEEEECCCCcEEEccCC
Q 015502          304 GKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA--PSLLVYDMNLKQWRWSHKC  381 (405)
Q Consensus       304 ~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~Yd~~~~~w~~l~~~  381 (405)
                      ..     ....+.+|+++.++...+..-.    .     ...++....|..|++.....  ..+.++|++++..+.++..
T Consensus       331 ~~-----g~~~i~~~d~~~~~~~~l~~~~----~-----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~  396 (415)
T 2hqs_A          331 NG-----GQQHIAKQDLATGGVQVLSSTF----L-----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT  396 (415)
T ss_dssp             CS-----SCEEEEEEETTTCCEEECCCSS----S-----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred             cC-----CceEEEEEECCCCCEEEecCCC----C-----cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC
Confidence            11     1245778877776654332111    0     12234456777777655322  2799999999888887532


Q ss_pred             CCCCCCcccceeeeeeceeccC
Q 015502          382 PVTKRFPLQLFTGFCFEPRLEI  403 (405)
Q Consensus       382 p~~~~~~~~~~~~~~~~p~~~~  403 (405)
                      .       ......+|.|..|-
T Consensus       397 ~-------~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          397 D-------GQVKFPAWSPYLHH  411 (415)
T ss_dssp             S-------SEEEEEEECCCCCC
T ss_pred             C-------CCCcCCcccccccc
Confidence            2       12457788887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=86.57  E-value=17  Score=32.26  Aligned_cols=68  Identities=6%  Similarity=-0.049  Sum_probs=42.0

Q ss_pred             ceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-CCeEEEEECC--CCcEEEccCCC
Q 015502          313 KGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-APSLLVYDMN--LKQWRWSHKCP  382 (405)
Q Consensus       313 ~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~Yd~~--~~~w~~l~~~p  382 (405)
                      ..+.+|+++.++.+.+..++... ..+. ...-+++...|+.+|+.... ...+.+|+++  +++++.+...+
T Consensus       233 ~~v~v~~~~~g~~~~~~~~~~~~-~~~~-~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~  303 (361)
T 3scy_A          233 GTVIAFRYADGMLDEIQTVAADT-VNAQ-GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL  303 (361)
T ss_dssp             CEEEEEEEETTEEEEEEEEESCS-SCCC-CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred             CeEEEEEecCCceEEeEEEecCC-CCCC-CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
Confidence            45999999987776655443110 0000 01123456678889887765 6789999885  67777665443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=86.51  E-value=17  Score=32.40  Aligned_cols=178  Identities=11%  Similarity=0.067  Sum_probs=81.9

Q ss_pred             ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015502          147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL  226 (405)
Q Consensus       147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  226 (405)
                      ..+.+||..+++....-.... +  ......+.+.+...  ..++.++.         ...+.+|+..++........  
T Consensus        96 g~i~iwd~~~~~~~~~~~~~~-h--~~~v~~~~~~~~~~--~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~--  159 (383)
T 3ei3_B           96 GDIILWDYDVQNKTSFIQGMG-P--GDAITGMKFNQFNT--NQLFVSSI---------RGATTLRDFSGSVIQVFAKT--  159 (383)
T ss_dssp             SCEEEEETTSTTCEEEECCCS-T--TCBEEEEEEETTEE--EEEEEEET---------TTEEEEEETTSCEEEEEECC--
T ss_pred             CeEEEEeCCCcccceeeecCC-c--CCceeEEEeCCCCC--CEEEEEeC---------CCEEEEEECCCCceEEEecc--
Confidence            667888888877665433211 1  11223444444222  23333332         13788898875443332110  


Q ss_pred             ccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCCc-EEEEEc
Q 015502          227 TGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGG  302 (405)
Q Consensus       227 ~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~  302 (405)
                      .........+.+  +|.+.+.+...        ..+..||+..+...      .+..... .-..+. .-+|+ +++.++
T Consensus       160 ~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~------~~~~h~~-~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          160 DSWDYWYCCVDVSVSRQMLATGDST--------GRLLLLGLDGHEIF------KEKLHKA-KVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             CCSSCCEEEEEEETTTTEEEEEETT--------SEEEEEETTSCEEE------EEECSSS-CEEEEEECSSCTTEEEEEE
T ss_pred             CCCCCCeEEEEECCCCCEEEEECCC--------CCEEEEECCCCEEE------EeccCCC-cEEEEEECCCCCCEEEEEe
Confidence            000011111222  45544444322        47889998543321      1111110 011122 22455 666654


Q ss_pred             cccccccCccceEEEEEEeC----ceeEEEeccChhHHhccCCCCcee--EEee-CCCEEEEEeCCCCeEEEEECCCCc
Q 015502          303 IGKQDRPDIIKGIGIWVLNG----KEWQEVARMPHKFFQGFGEFDDVF--ASSG-TDDLIYIQSYGAPSLLVYDMNLKQ  374 (405)
Q Consensus       303 ~~~~~~~~~~~~~~vw~l~~----~~W~~v~~i~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~~Yd~~~~~  374 (405)
                      .+        ..+.+|++..    ......  +..        ...+.  ++.. .++.++... .+..+.+||+++++
T Consensus       225 ~d--------~~i~iwd~~~~~~~~~~~~~--~~~--------~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          225 VD--------ATVKLWDLRNIKDKNSYIAE--MPH--------EKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSYDWS  284 (383)
T ss_dssp             TT--------SEEEEEEGGGCCSTTCEEEE--EEC--------SSCEEEEEECTTTSCEEEEEE-SSSEEEEEETTBTT
T ss_pred             CC--------CEEEEEeCCCCCcccceEEE--ecC--------CCceEEEEEcCCCCCEEEEEc-CCCcEEEEECCCCc
Confidence            32        4599999985    222221  111        11222  2334 555555543 46789999988754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=84.76  E-value=19  Score=31.34  Aligned_cols=59  Identities=8%  Similarity=-0.074  Sum_probs=33.9

Q ss_pred             CCCeeEEecCCCCeee-eccCCCCCCCCeEEEecCc-eEEEEeCCCCceEEEEeCcccceee
Q 015502          102 DEPIGYAYDPILRKWY-GIELPCIETSNWFIASSYG-LVCFMDNDSRSELYVCNPISKSWKK  161 (405)
Q Consensus       102 ~~~~~~~~d~~~~~w~-~~~~p~~~~~~~~~~s~~G-ll~~~~~~~~~~~~v~NP~T~~~~~  161 (405)
                      .......+|...++.. .++.+.......+.-+.+| .+++... ....++++|+.|++...
T Consensus        19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B           19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN-HYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC-CCCcEEEEeCCCCcEEE
Confidence            3446778888776543 2333321122334445555 4555543 34789999999987653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=84.65  E-value=20  Score=31.53  Aligned_cols=71  Identities=11%  Similarity=0.245  Sum_probs=39.4

Q ss_pred             CcEEEEEccccccccCccceEEEEEEeCce--eEEEeccChhHHhccCCCCcee--EEeeCCCEEEEEeCCCCeEEEEEC
Q 015502          295 EKLVMVGGIGKQDRPDIIKGIGIWVLNGKE--WQEVARMPHKFFQGFGEFDDVF--ASSGTDDLIYIQSYGAPSLLVYDM  370 (405)
Q Consensus       295 G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~--W~~v~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Yd~  370 (405)
                      |++++.++.+        ..+.+|++....  +........      .....+.  ++...++.++... .+..+.+||+
T Consensus       221 ~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iw~~  285 (379)
T 3jrp_A          221 RSYLASVSQD--------RTCIIWTQDNEQGPWKKTLLKEE------KFPDVLWRASWSLSGNVLALSG-GDNKVTLWKE  285 (379)
T ss_dssp             SEEEEEEETT--------SCEEEEEESSTTSCCEEEESSSS------CCSSCEEEEEECSSSCCEEEEE-SSSSEEEEEE
T ss_pred             CCeEEEEeCC--------CEEEEEeCCCCCccceeeeeccc------cCCCcEEEEEEcCCCCEEEEec-CCCcEEEEeC
Confidence            5666665532        359999999642  222111000      0011222  3345566666554 4678999999


Q ss_pred             C-CCcEEEccC
Q 015502          371 N-LKQWRWSHK  380 (405)
Q Consensus       371 ~-~~~w~~l~~  380 (405)
                      + .++|+.+..
T Consensus       286 ~~~~~~~~~~~  296 (379)
T 3jrp_A          286 NLEGKWEPAGE  296 (379)
T ss_dssp             EETTEEEEEEE
T ss_pred             CCCCccccccc
Confidence            8 567877654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=83.92  E-value=34  Score=34.09  Aligned_cols=110  Identities=9%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc-CceEEe--CCcEEEEEccccccccCccceE
Q 015502          239 DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC-GRLMNL--KEKLVMVGGIGKQDRPDIIKGI  315 (405)
Q Consensus       239 ~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~~--~G~L~~v~~~~~~~~~~~~~~~  315 (405)
                      +|.|||....       ....|..+++....-..     ++..  .... ..|+..  +++||++...        ...|
T Consensus       507 ~g~ly~td~~-------~~~~I~~~~~dG~~~~~-----l~~~--~l~~PnGlavd~~~~~LY~aD~~--------~~~I  564 (699)
T 1n7d_A          507 HGFMYWTDWG-------TPAKIKKGGLNGVDIYS-----LVTE--NIQWPNGITLDLLSGRLYWVDSK--------LHSI  564 (699)
T ss_dssp             SSCCEECCCS-------SSCCEEBCCSSSCCCCE-----ESCS--SCSSCCCEEECTTTCCEEEEETT--------TTEE
T ss_pred             CCcEEEcccC-------CCCeEEEEeCCCCCeeE-----EEeC--CCCCccEEEEeccCCEEEEEecC--------CCeE
Confidence            6889997521       12468888876443111     1111  1111 234443  5899988752        2457


Q ss_pred             EEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEE
Q 015502          316 GIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRW  377 (405)
Q Consensus       316 ~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~  377 (405)
                      .++.++...-..+...+..+       ....++...++.||+.......|.++|..+++-..
T Consensus       565 ~~~d~dG~~~~~~~~~~~~~-------~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          565 SSIDVNGGNRKTILEDEKRL-------AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             EEECSSSSCCEEECCCSSSC-------SSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred             EEEccCCCceEEEEecCCcC-------CCceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence            77777643323332211110       12334444567888887667799999998776544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=83.73  E-value=39  Score=33.98  Aligned_cols=219  Identities=15%  Similarity=0.133  Sum_probs=105.3

Q ss_pred             EEecCCCCeeeeccCCCCCC-CCe-EEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCC
Q 015502          107 YAYDPILRKWYGIELPCIET-SNW-FIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVS  184 (405)
Q Consensus       107 ~~~d~~~~~w~~~~~p~~~~-~~~-~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~  184 (405)
                      ..||+..+++..+..+.+.. ... +....+|.|.+...   ..++++||.++++..+...+...........+..|...
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~---~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  506 (781)
T 3v9f_A          430 SYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH---AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG  506 (781)
T ss_dssp             EEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET---TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC
T ss_pred             EEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC---CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC
Confidence            45676666665554321111 222 33344677776543   57899999999987765432111011112334444432


Q ss_pred             CcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccC-CCccEEE--CcEEEeeEEecCCCCCCCccEE-
Q 015502          185 HRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRA-GDESIIC--DGVLYFLIYATGGGAPENRHGL-  260 (405)
Q Consensus       185 ~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~-~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i-  260 (405)
                         .|.+ +..         ...+..|+..++.+.....+  ..... ...+++.  +|.+++ +..         ..+ 
T Consensus       507 ---~lWi-gt~---------~~Gl~~~~~~~~~~~~~~~~--~~l~~~~i~~i~~d~~g~lWi-~T~---------~Glv  561 (781)
T 3v9f_A          507 ---RFWI-GTF---------GGGVGIYTPDMQLVRKFNQY--EGFCSNTINQIYRSSKGQMWL-ATG---------EGLV  561 (781)
T ss_dssp             ---CEEE-EES---------SSCEEEECTTCCEEEEECTT--TTCSCSCEEEEEECTTSCEEE-EET---------TEEE
T ss_pred             ---CEEE-EEc---------CCCEEEEeCCCCeEEEccCC--CCCCCCeeEEEEECCCCCEEE-EEC---------CCce
Confidence               3333 221         01466788777776553211  11111 1123333  466544 422         256 


Q ss_pred             EEEECCCCcchhhhcccccccCCccccCceE-EeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhcc
Q 015502          261 ISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGF  339 (405)
Q Consensus       261 ~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~  339 (405)
                      ..||+.+.++......  --+|.... ..++ ..+|.|.+.+.          ..+..+..+...+.....-.     ++
T Consensus       562 ~~~d~~~~~~~~~~~~--~gl~~~~i-~~i~~d~~g~lW~~t~----------~Gl~~~~~~~~~~~~~~~~d-----Gl  623 (781)
T 3v9f_A          562 CFPSARNFDYQVFQRK--EGLPNTHI-RAISEDKNGNIWASTN----------TGISCYITSKKCFYTYDHSN-----NI  623 (781)
T ss_dssp             EESCTTTCCCEEECGG--GTCSCCCC-CEEEECSSSCEEEECS----------SCEEEEETTTTEEEEECGGG-----TC
T ss_pred             EEECCCCCcEEEcccc--CCCCCceE-EEEEECCCCCEEEEcC----------CceEEEECCCCceEEecccC-----Cc
Confidence            9999998886532100  11222211 2233 34688887763          22666666666665543211     11


Q ss_pred             CCCC-ceeE-EeeCCCEEEEEeCCCCeEEEEECCCC
Q 015502          340 GEFD-DVFA-SSGTDDLIYIQSYGAPSLLVYDMNLK  373 (405)
Q Consensus       340 ~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~Yd~~~~  373 (405)
                      .... ..-+ +...++.+|+..  ...+..||++.-
T Consensus       624 ~~~~f~~~~~~~~~~G~l~~g~--~~Gl~~f~p~~~  657 (781)
T 3v9f_A          624 PQGSFISGCVTKDHNGLIYFGS--INGLCFFNPDIA  657 (781)
T ss_dssp             CSSCEEEEEEEECTTSCEEEEE--TTEEEEECSCCG
T ss_pred             cccccccCceEECCCCEEEEEC--CCceEEEChhhc
Confidence            0000 0112 233466677754  346888887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=83.68  E-value=21  Score=30.93  Aligned_cols=111  Identities=12%  Similarity=0.088  Sum_probs=57.8

Q ss_pred             cEEEEEECCC-CcchhhhcccccccCCccccCceE-EeCCc-EEEEEccccccccCccceEEEEEEeC--ceeEE---Ee
Q 015502          258 HGLISFNLSS-RSSHALLIKSFIPVPCALTCGRLM-NLKEK-LVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQE---VA  329 (405)
Q Consensus       258 ~~i~~fD~~~-~~w~~~~~~~~~~~p~~~~~~~l~-~~~G~-L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~---v~  329 (405)
                      ..+..||+.+ .+....... ....+.......+. .-+|+ |++.+..        ...+.+|+++.  ++++.   +.
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pdg~~l~~~~~~--------~~~i~~~~~~~~~g~~~~~~~~~  221 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPA-EVTTVEGAGPRHMVFHPNEQYAYCVNEL--------NSSVDVWELKDPHGNIECVQTLD  221 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEE-EEECSTTCCEEEEEECTTSSEEEEEETT--------TTEEEEEESSCTTSCCEEEEEEE
T ss_pred             CEEEEEEecCCCceeeeccc-ccccCCCCCcceEEECCCCCEEEEEeCC--------CCEEEEEEecCCCCcEEEEeecc
Confidence            4799999977 543211000 11112111111222 23565 5555432        24699999964  44443   33


Q ss_pred             ccChhHHhccCCCCc--eeEEeeCCCEEEEEeCCCCeEEEEECC--CCcEEEccCC
Q 015502          330 RMPHKFFQGFGEFDD--VFASSGTDDLIYIQSYGAPSLLVYDMN--LKQWRWSHKC  381 (405)
Q Consensus       330 ~i~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~Yd~~--~~~w~~l~~~  381 (405)
                      .++..    +.....  .+++...|+.+|+....+..+.+||++  +++++.+...
T Consensus       222 ~~~~~----~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~  273 (343)
T 1ri6_A          222 MMPEN----FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  273 (343)
T ss_dssp             CSCTT----CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             ccCcc----ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence            33321    111111  234456688888877667789999998  6667666443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=83.66  E-value=18  Score=34.72  Aligned_cols=194  Identities=10%  Similarity=0.040  Sum_probs=96.2

Q ss_pred             ecCceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEE
Q 015502          133 SSYGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIY  211 (405)
Q Consensus       133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy  211 (405)
                      +.+|.+++.+.. ...+.++|..|++... ++.-   .    ....+.+++.. .| +++.+..          -.+.+|
T Consensus       146 ~p~~~~~vs~~~-d~~V~v~D~~t~~~~~~i~~g---~----~~~~v~~spdg-~~-l~v~~~d----------~~V~v~  205 (543)
T 1nir_A          146 DLPNLFSVTLRD-AGQIALVDGDSKKIVKVIDTG---Y----AVHISRMSASG-RY-LLVIGRD----------ARIDMI  205 (543)
T ss_dssp             CGGGEEEEEEGG-GTEEEEEETTTCCEEEEEECS---T----TEEEEEECTTS-CE-EEEEETT----------SEEEEE
T ss_pred             CCCCEEEEEEcC-CCeEEEEECCCceEEEEEecC---c----ccceEEECCCC-CE-EEEECCC----------CeEEEE
Confidence            345666665532 4789999999987654 3311   1    12244455533 23 4443321          278899


Q ss_pred             eC--CCCCcccccccccccccCCCccEEE------CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccC
Q 015502          212 DS--DTMMWVTSWKEVLTGWRAGDESIIC------DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVP  282 (405)
Q Consensus       212 ~s--~~~~W~~~~~~~~~~~~~~~~~v~~------~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p  282 (405)
                      |.  .+++-..   .+....  ....+.+      +|+ +|+.+...        ..+..+|..+.+-..     .++.+
T Consensus       206 D~~~~t~~~~~---~i~~g~--~p~~va~sp~~~~dg~~l~v~~~~~--------~~v~v~D~~t~~~~~-----~i~~~  267 (543)
T 1nir_A          206 DLWAKEPTKVA---EIKIGI--EARSVESSKFKGYEDRYTIAGAYWP--------PQFAIMDGETLEPKQ-----IVSTR  267 (543)
T ss_dssp             ETTSSSCEEEE---EEECCS--EEEEEEECCSTTCTTTEEEEEEEES--------SEEEEEETTTCCEEE-----EEECC
T ss_pred             ECcCCCCcEEE---EEecCC--CcceEEeCCCcCCCCCEEEEEEccC--------CeEEEEeccccccce-----eeccc
Confidence            98  4433211   111110  0112222      454 55544322        478889988765321     12221


Q ss_pred             Cc--------cc--cCceEEe-CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeC
Q 015502          283 CA--------LT--CGRLMNL-KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGT  351 (405)
Q Consensus       283 ~~--------~~--~~~l~~~-~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~  351 (405)
                      ..        ..  -..++.. +|..+++....       ...+.+|++.+.+-..+..++..      ....-+++...
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-------~g~i~vvd~~~~~~l~~~~i~~~------~~~~~~~~spd  334 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-------TGKVLLVNYKDIDNLTVTSIGAA------PFLHDGGWDSS  334 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEETT-------TTEEEEEECTTSSSCEEEEEECC------SSCCCEEECTT
T ss_pred             CcccCccccccCCceEEEEECCCCCEEEEEECC-------CCeEEEEEecCCCcceeEEeccC------cCccCceECCC
Confidence            10        00  0122222 35555554321       34577787765332222233211      01122455667


Q ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEE
Q 015502          352 DDLIYIQSYGAPSLLVYDMNLKQWRW  377 (405)
Q Consensus       352 ~~~i~~~~~~~~~~~~Yd~~~~~w~~  377 (405)
                      |+.+|+....+..+.++|+++++...
T Consensus       335 g~~l~va~~~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          335 HRYFMTAANNSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             SCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CCEEEEEecCCCeEEEEECCCCeEEE
Confidence            88888876556789999999997654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=83.66  E-value=20  Score=30.74  Aligned_cols=189  Identities=10%  Similarity=-0.006  Sum_probs=85.0

Q ss_pred             cCceEEEEeCCCCceEEEEeCcccceee-ccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015502          134 SYGLVCFMDNDSRSELYVCNPISKSWKK-LEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD  212 (405)
Q Consensus       134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~  212 (405)
                      .-|-+++.+ .....++++|+.|++..- ++.. ..  ....  .....+..   ++++..           ...+..||
T Consensus         3 ~~~~~lv~~-~~~~~v~~~d~~tG~~~w~~~~~-~~--~~~~--~~~~~pdG---~ilvs~-----------~~~V~~~d   62 (276)
T 3no2_A            3 SPQHLLVGG-SGWNKIAIINKDTKEIVWEYPLE-KG--WECN--SVAATKAG---EILFSY-----------SKGAKMIT   62 (276)
T ss_dssp             CCCEEEEEC-TTCSEEEEEETTTTEEEEEEECC-TT--CCCC--EEEECTTS---CEEEEC-----------BSEEEEEC
T ss_pred             CCCcEEEee-CCCCEEEEEECCCCeEEEEeCCC-cc--CCCc--CeEECCCC---CEEEeC-----------CCCEEEEC
Confidence            334444443 235788999998886543 2221 10  0111  22233433   234422           12577888


Q ss_pred             C-CCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc-chhhhccccc-ccCCccccC-
Q 015502          213 S-DTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS-SHALLIKSFI-PVPCALTCG-  288 (405)
Q Consensus       213 s-~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~-w~~~~~~~~~-~~p~~~~~~-  288 (405)
                      . ++-.|+..... ..  .........+|.+++....       ....++.+|+..+. |+.    ..- ..+...... 
T Consensus        63 ~~G~~~W~~~~~~-~~--~~~~~~~~~dG~~lv~~~~-------~~~~v~~vd~~Gk~l~~~----~~~~~~~~~~~~~~  128 (276)
T 3no2_A           63 RDGRELWNIAAPA-GC--EMQTARILPDGNALVAWCG-------HPSTILEVNMKGEVLSKT----EFETGIERPHAQFR  128 (276)
T ss_dssp             TTSCEEEEEECCT-TC--EEEEEEECTTSCEEEEEES-------TTEEEEEECTTSCEEEEE----EECCSCSSGGGSCS
T ss_pred             CCCCEEEEEcCCC-Cc--cccccEECCCCCEEEEecC-------CCCEEEEEeCCCCEEEEE----eccCCCCccccccc
Confidence            7 23346553210 00  0001122337777666432       02478888874432 221    000 000000111 


Q ss_pred             c-eEEeCCcEEEEEccccccccCccceEEEEEEeC-ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEE
Q 015502          289 R-LMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG-KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL  366 (405)
Q Consensus       289 ~-l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~-~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  366 (405)
                      . ....+|.++++...        ...+.+|+.+. ..|+.-..  ..        .........|++++... ....++
T Consensus       129 ~v~~~~~G~~lv~~~~--------~~~v~~~d~~G~~~w~~~~~--~~--------~~~~~~~~~g~~~v~~~-~~~~v~  189 (276)
T 3no2_A          129 QINKNKKGNYLVPLFA--------TSEVREIAPNGQLLNSVKLS--GT--------PFSSAFLDNGDCLVACG-DAHCFV  189 (276)
T ss_dssp             CCEECTTSCEEEEETT--------TTEEEEECTTSCEEEEEECS--SC--------CCEEEECTTSCEEEECB-TTSEEE
T ss_pred             CceECCCCCEEEEecC--------CCEEEEECCCCCEEEEEECC--CC--------ccceeEcCCCCEEEEeC-CCCeEE
Confidence            1 12446777766542        23467776662 34665332  10        01112233455554443 345799


Q ss_pred             EEECCCCcE
Q 015502          367 VYDMNLKQW  375 (405)
Q Consensus       367 ~Yd~~~~~w  375 (405)
                      .+|+++++.
T Consensus       190 ~~d~~tG~~  198 (276)
T 3no2_A          190 QLNLESNRI  198 (276)
T ss_dssp             EECTTTCCE
T ss_pred             EEeCcCCcE
Confidence            999997754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=83.65  E-value=19  Score=30.49  Aligned_cols=215  Identities=10%  Similarity=-0.006  Sum_probs=105.0

Q ss_pred             eeEEecCCCCeeeeccCCCCCCC-CeEEEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCC
Q 015502          105 IGYAYDPILRKWYGIELPCIETS-NWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRV  183 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~-~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~  183 (405)
                      ....+|+. ++...+.+|..... ..+....+|.+++.... ...++++|+ +++..........    .....+..++.
T Consensus        79 ~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~-~g~~~~~~~~~~~----~~~~~i~~~~~  151 (299)
T 2z2n_A           79 KIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN-GNRIGRITD-DGKIREYELPNKG----SYPSFITLGSD  151 (299)
T ss_dssp             EEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT-TTEEEEECT-TCCEEEEECSSTT----CCEEEEEECTT
T ss_pred             eEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecC-CceEEEECC-CCCEEEecCCCCC----CCCceEEEcCC
Confidence            45567765 44444444421111 12333456777776532 468899999 7776655322111    12235556654


Q ss_pred             CCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEE
Q 015502          184 SHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLI  261 (405)
Q Consensus       184 ~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~  261 (405)
                      .   ++++....         ...+.+|+. ++.......  +.. ......+.+  +|.+|+....        ...|.
T Consensus       152 g---~l~v~~~~---------~~~i~~~~~-~g~~~~~~~--~~~-~~~~~~i~~~~~g~l~v~~~~--------~~~i~  207 (299)
T 2z2n_A          152 N---ALWFTENQ---------NNAIGRITE-SGDITEFKI--PTP-ASGPVGITKGNDDALWFVEII--------GNKIG  207 (299)
T ss_dssp             S---CEEEEETT---------TTEEEEECT-TCCEEEEEC--SST-TCCEEEEEECTTSSEEEEETT--------TTEEE
T ss_pred             C---CEEEEeCC---------CCEEEEEcC-CCcEEEeeC--CCC-CCcceeEEECCCCCEEEEccC--------CceEE
Confidence            3   34543311         126778887 666543211  111 111123344  5787766421        24799


Q ss_pred             EEECCCCcchhhhcccccccCCcccc-CceEE-eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhcc
Q 015502          262 SFNLSSRSSHALLIKSFIPVPCALTC-GRLMN-LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGF  339 (405)
Q Consensus       262 ~fD~~~~~w~~~~~~~~~~~p~~~~~-~~l~~-~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~  339 (405)
                      .||+ +.++..      ...+..... ..+.. .+|+|++....        ...+.+|+. +.+...+. ++..     
T Consensus       208 ~~~~-~g~~~~------~~~~~~~~~~~~i~~~~~g~l~v~~~~--------~~~i~~~d~-~g~~~~~~-~~~~-----  265 (299)
T 2z2n_A          208 RITT-SGEITE------FKIPTPNARPHAITAGAGIDLWFTEWG--------ANKIGRLTS-NNIIEEYP-IQIK-----  265 (299)
T ss_dssp             EECT-TCCEEE------EECSSTTCCEEEEEECSTTCEEEEETT--------TTEEEEEET-TTEEEEEE-CSSS-----
T ss_pred             EECC-CCcEEE------EECCCCCCCceeEEECCCCCEEEeccC--------CceEEEECC-CCceEEEe-CCCC-----
Confidence            9999 665432      222321111 12333 36888877632        234666665 33333221 2211     


Q ss_pred             CCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcE
Q 015502          340 GEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQW  375 (405)
Q Consensus       340 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w  375 (405)
                        ...+.++...++.+|+... ...+..||+++++.
T Consensus       266 --~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~~~  298 (299)
T 2z2n_A          266 --SAEPHGICFDGETIWFAME-CDKIGKLTLIKDNM  298 (299)
T ss_dssp             --SCCEEEEEECSSCEEEEET-TTEEEEEEEC----
T ss_pred             --CCccceEEecCCCEEEEec-CCcEEEEEcCcccC
Confidence              0122232226677888753 46899999988764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=83.36  E-value=23  Score=31.16  Aligned_cols=66  Identities=15%  Similarity=0.184  Sum_probs=38.4

Q ss_pred             CCcEEEEEccccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEE--eeCC--CEEEEEeCCCCeEEE
Q 015502          294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFAS--SGTD--DLIYIQSYGAPSLLV  367 (405)
Q Consensus       294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~--~~~~--~~i~~~~~~~~~~~~  367 (405)
                      ++++++++..+        ..+.+|++..  ..+..+..+...       ...+.++  ...+  +.+++....+..+.+
T Consensus       171 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~h-------~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          171 ESRKFVTGGAD--------NLVKIWKYNSDAQTYVLESTLEGH-------SDWVRDVAWSPTVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             TTCEEEEEETT--------SCEEEEEEETTTTEEEEEEEECCC-------SSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             CCCEEEEEeCC--------CeEEEEEecCCCcceeeEEEEecc-------cCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence            46777666532        3599999985  356665554321       1123232  3342  344444445778999


Q ss_pred             EECCCCc
Q 015502          368 YDMNLKQ  374 (405)
Q Consensus       368 Yd~~~~~  374 (405)
                      ||+++++
T Consensus       236 wd~~~~~  242 (379)
T 3jrp_A          236 WTQDNEQ  242 (379)
T ss_dssp             EEESSTT
T ss_pred             EeCCCCC
Confidence            9999873

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=83.20  E-value=19  Score=30.12  Aligned_cols=194  Identities=9%  Similarity=0.021  Sum_probs=92.9

Q ss_pred             EEecCceEEE-EeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEE
Q 015502          131 IASSYGLVCF-MDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIH  209 (405)
Q Consensus       131 ~~s~~Gll~~-~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~  209 (405)
                      ....+|.+++ .+. ....++++|+.++....++....     ....++..++..   ++++...          ...+.
T Consensus        30 ~~~~~g~l~v~~~~-~~~~i~~~~~~~~~~~~~~~~~~-----~~p~~i~~~~~g---~l~v~~~----------~~~i~   90 (270)
T 1rwi_B           30 AVDSAGNVYVTSEG-MYGRVVKLATGSTGTTVLPFNGL-----YQPQGLAVDGAG---TVYVTDF----------NNRVV   90 (270)
T ss_dssp             EECTTCCEEEEECS-SSCEEEEECC-----EECCCCSC-----CSCCCEEECTTC---CEEEEET----------TTEEE
T ss_pred             EECCCCCEEEEccC-CCCcEEEecCCCcccceEeeCCc-----CCcceeEECCCC---CEEEEcC----------CCEEE
Confidence            3345566666 432 24678899998877655542211     112345556543   2555432          12678


Q ss_pred             EEeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCcccc
Q 015502          210 IYDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTC  287 (405)
Q Consensus       210 vy~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~  287 (405)
                      +|+...+.-......   .. .....+.+  +|.+|+....        ...|..||..+.....      .........
T Consensus        91 ~~d~~~~~~~~~~~~---~~-~~p~~i~~~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~------~~~~~~~~p  152 (270)
T 1rwi_B           91 TLAAGSNNQTVLPFD---GL-NYPEGLAVDTQGAVYVADRG--------NNRVVKLAAGSKTQTV------LPFTGLNDP  152 (270)
T ss_dssp             EECTTCSCCEECCCC---SC-SSEEEEEECTTCCEEEEEGG--------GTEEEEECTTCCSCEE------CCCCSCCSC
T ss_pred             EEeCCCceEeeeecC---Cc-CCCcceEECCCCCEEEEECC--------CCEEEEEECCCceeEe------eccccCCCc
Confidence            888765543322110   00 11123333  6788876532        2478888876554221      111110111


Q ss_pred             CceEEe-CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEee-CCCEEEEEeCCCCeE
Q 015502          288 GRLMNL-KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSG-TDDLIYIQSYGAPSL  365 (405)
Q Consensus       288 ~~l~~~-~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~  365 (405)
                      ..++.. +|+||+....        ...+.+|.++...-... ....     +   ..+.++.. .++.+|+.......+
T Consensus       153 ~~i~~~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~~-~~~~-----~---~~p~~i~~d~~g~l~v~~~~~~~v  215 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTD--------NNRVVKLEAESNNQVVL-PFTD-----I---TAPWGIAVDEAGTVYVTEHNTNQV  215 (270)
T ss_dssp             CCEEECTTCCEEEEEGG--------GTEEEEECTTTCCEEEC-CCSS-----C---CSEEEEEECTTCCEEEEETTTSCE
T ss_pred             eeEEEeCCCCEEEEECC--------CCEEEEEecCCCceEee-cccC-----C---CCceEEEECCCCCEEEEECCCCcE
Confidence            234433 6888887642        23466666554332111 1100     0   12233322 234788877666789


Q ss_pred             EEEECCCCcEEEc
Q 015502          366 LVYDMNLKQWRWS  378 (405)
Q Consensus       366 ~~Yd~~~~~w~~l  378 (405)
                      ..||++++.-...
T Consensus       216 ~~~~~~~~~~~~~  228 (270)
T 1rwi_B          216 VKLLAGSTTSTVL  228 (270)
T ss_dssp             EEECTTCSCCEEC
T ss_pred             EEEcCCCCcceee
Confidence            9999988765443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=80.73  E-value=25  Score=29.69  Aligned_cols=71  Identities=14%  Similarity=0.033  Sum_probs=36.3

Q ss_pred             eEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEE---CcEEEeeEEecCCC
Q 015502          176 LSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIIC---DGVLYFLIYATGGG  252 (405)
Q Consensus       176 ~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~---~g~iy~l~~~~~~~  252 (405)
                      .++.+|+..+  .|++....         ...+.+|+...+.-....   .... .....+.+   +|.+||....    
T Consensus        39 ~gi~~d~~~~--~ly~~d~~---------~~~I~~~~~~g~~~~~~~---~~~~-~~p~~ia~d~~~~~lyv~d~~----   99 (267)
T 1npe_A           39 IGLAFDCVDK--VVYWTDIS---------EPSIGRASLHGGEPTTII---RQDL-GSPEGIALDHLGRTIFWTDSQ----   99 (267)
T ss_dssp             EEEEEETTTT--EEEEEETT---------TTEEEEEESSSCCCEEEE---CTTC-CCEEEEEEETTTTEEEEEETT----
T ss_pred             EEEEEecCCC--EEEEEECC---------CCEEEEEecCCCCcEEEE---ECCC-CCccEEEEEecCCeEEEEECC----
Confidence            4666665322  45554421         236788887544321110   0011 11123433   5899998632    


Q ss_pred             CCCCccEEEEEECCCCc
Q 015502          253 APENRHGLISFNLSSRS  269 (405)
Q Consensus       253 ~~~~~~~i~~fD~~~~~  269 (405)
                          ...|..+|+....
T Consensus       100 ----~~~I~~~~~~g~~  112 (267)
T 1npe_A          100 ----LDRIEVAKMDGTQ  112 (267)
T ss_dssp             ----TTEEEEEETTSCS
T ss_pred             ----CCEEEEEEcCCCC
Confidence                2579999987543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=80.32  E-value=12  Score=37.03  Aligned_cols=116  Identities=15%  Similarity=0.141  Sum_probs=63.7

Q ss_pred             CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccccccCCc--------cccCceEEeCCcEEEEEc
Q 015502          233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSFIPVPCA--------LTCGRLMNLKEKLVMVGG  302 (405)
Q Consensus       233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~~~~p~~--------~~~~~l~~~~G~L~~v~~  302 (405)
                      ..+++.+|++|+....         ..++++|..+.+  |+.    . ...+..        .....++..+|+||+.+.
T Consensus        60 ~~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~W~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~  125 (668)
T 1kv9_A           60 ATPLFHDGVIYTSMSW---------SRVIAVDAASGKELWRY----D-PEVAKVKARTSCCDAVNRGVALWGDKVYVGTL  125 (668)
T ss_dssp             CCCEEETTEEEEEEGG---------GEEEEEETTTCCEEEEE----C-CCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT
T ss_pred             cCCEEECCEEEEECCC---------CeEEEEECCCChhceEE----C-CCCCccccccccccCCccceEEECCEEEEEcC
Confidence            3578899999998642         479999987655  542    1 111110        112345667888887653


Q ss_pred             cccccccCccceEEEEEEeC--ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCC-----CCeEEEEECCCCc-
Q 015502          303 IGKQDRPDIIKGIGIWVLNG--KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYG-----APSLLVYDMNLKQ-  374 (405)
Q Consensus       303 ~~~~~~~~~~~~~~vw~l~~--~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~Yd~~~~~-  374 (405)
                      .         ..+..++.++  ..|+.-..-+...   .......   ...++.||+....     ...+++||.++++ 
T Consensus       126 d---------g~l~alD~~tG~~~W~~~~~~~~~~---~~~~~~P---~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          126 D---------GRLIALDAKTGKAIWSQQTTDPAKP---YSITGAP---RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             T---------SEEEEEETTTCCEEEEEECSCTTSS---CBCCSCC---EEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             C---------CEEEEEECCCCCEeeeeccCCCCCc---ceecCCC---EEECCEEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence            1         2244444443  3687643211100   0000011   1136788875432     3689999999886 


Q ss_pred             -EEE
Q 015502          375 -WRW  377 (405)
Q Consensus       375 -w~~  377 (405)
                       |+.
T Consensus       191 ~W~~  194 (668)
T 1kv9_A          191 AWRF  194 (668)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence             544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-09
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	5e-08
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	2e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-06

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83
          LPD+LL  I + L +  + +   VC+RW+ + S    LW
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES-LW 41

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (115), Expect = 5e-08
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 39 LSVDLI--LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83
          L  DLI  LP ++  +I  YL    I  +  V + W++I+     LW
Sbjct: 1  LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW 47

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83
            D + E IL+YL   S+  A  VC+ W+ + S    LW
Sbjct: 18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGM-LW 55

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 39 LSVDLI--LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLW 83
             D I  LP +L   +L++L    + +A   CR W  +      LW
Sbjct: 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNL-LW 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.72
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.37
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.13
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.51
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.42
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.18
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.01
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	87.19
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	86.98
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.59
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	84.85
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	83.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	82.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	80.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	80.06

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-15  Score=135.06  Aligned_cols=247  Identities=15%  Similarity=0.166  Sum_probs=169.4

Q ss_pred             eeEEecCCCCeeeeccCCCCCCCCeEEEecCceEEEEeCC--------CCceEEEEeCcccceeeccCCCCCCCCcccee
Q 015502          105 IGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDND--------SRSELYVCNPISKSWKKLEEPPGLKFSDYSAL  176 (405)
Q Consensus       105 ~~~~~d~~~~~w~~~~~p~~~~~~~~~~s~~Gll~~~~~~--------~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~  176 (405)
                      ....||+..++|..++....++..+...+.+|-|++.++.        ....++++||.+++|..++++|.++.. +  .
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~-~--~   96 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-I--G   96 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-C--E
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecc-e--e
Confidence            4568999999999986444455555556667788777652        135789999999999999998865522 2  2


Q ss_pred             EEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCcccccccccccccCCCccEEECcEEEeeEEecCCCCCCC
Q 015502          177 SLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPEN  256 (405)
Q Consensus       177 ~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~  256 (405)
                      +...+.     +++++++....    .....+++|+..++.|.....  ....+..+..+.+++.+|++++..   ....
T Consensus        97 ~~~~~~-----~i~~~gg~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~~GG~~---~~~~  162 (288)
T d1zgka1          97 VGVIDG-----HIYAVGGSHGC----IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFD---GTNR  162 (288)
T ss_dssp             EEEETT-----EEEEECCEETT----EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBC---SSCB
T ss_pred             ccccce-----eeEEecceecc----cccceeeeeccccCccccccc--cccccccceeeeeeecceEecCcc---cccc
Confidence            222222     77877764311    123468899999999988543  333455667788899999998543   2333


Q ss_pred             ccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHH
Q 015502          257 RHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFF  336 (405)
Q Consensus       257 ~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~  336 (405)
                      ...+..||+.+++|...     ...+........+..+++|+++++....   .......++.+...+|+.+..+|....
T Consensus       163 ~~~~~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~i~GG~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~r~  234 (288)
T d1zgka1         163 LNSAECYYPERNEWRMI-----TAMNTIRSGAGVCVLHNCIYAAGGYDGQ---DQLNSVERYDVETETWTFVAPMKHRRS  234 (288)
T ss_dssp             CCCEEEEETTTTEEEEC-----CCCSSCCBSCEEEEETTEEEEECCBCSS---SBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             cceEEEeeccccccccc-----cccccccccccccceeeeEEEecCcccc---ccccceeeeeecceeeecccCccCccc
Confidence            45799999999999732     2333334455677889999999875432   234567777777899999887765322


Q ss_pred             hccCCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCcEEEccCCCCC
Q 015502          337 QGFGEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQWRWSHKCPVT  384 (405)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~w~~l~~~p~~  384 (405)
                              ..++...++.||+...     ....+.+||+++++|+.++++|..
T Consensus       235 --------~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  279 (288)
T d1zgka1         235 --------ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSG  279 (288)
T ss_dssp             --------SCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC
T ss_pred             --------ceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCC
Confidence                    1233334678888642     235789999999999999988764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-13  Score=121.08  Aligned_cols=208  Identities=16%  Similarity=0.171  Sum_probs=141.6

Q ss_pred             ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015502          147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL  226 (405)
Q Consensus       147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  226 (405)
                      ..+.++||.|++|..++++|.++ ..+.++.  .+.     +|+++|+.............+++||..+++|+... + +
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R-~~~~~~~--~~~-----~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~-~-~   88 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPR-SGLAGCV--VGG-----LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-P-M   88 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCC-BSCEEEE--ETT-----EEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-C-C
T ss_pred             ceEEEEECCCCeEEECCCCCCcc-ceeEEEE--ECC-----EEEEEeCcccCCCCccccchhhhcccccccccccc-c-c
Confidence            56889999999999999888655 2222222  222     78888875322222222457899999999999875 3 3


Q ss_pred             ccccCCCccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEEeCCcEEEEEccccc
Q 015502          227 TGWRAGDESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMNLKEKLVMVGGIGKQ  306 (405)
Q Consensus       227 ~~~~~~~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~~~G~L~~v~~~~~~  306 (405)
                      +..+..+.++.++|++|++++..+   .........||+.++.|..     ....|..+....++..+++++++++....
T Consensus        89 p~~r~~~~~~~~~~~i~~~gg~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~~~GG~~~~  160 (288)
T d1zgka1          89 SVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDEWHL-----VAPMLTRRIGVGVAVLNRLLYAVGGFDGT  160 (288)
T ss_dssp             SSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTEEEE-----CCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             cceecceeccccceeeEEecceec---ccccceeeeeccccCcccc-----ccccccccccceeeeeeecceEecCcccc
Confidence            344566778888999999986532   2233568899999999974     23444445556678889999999886433


Q ss_pred             cccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCcEEEccCC
Q 015502          307 DRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQWRWSHKC  381 (405)
Q Consensus       307 ~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~w~~l~~~  381 (405)
                      .   ....+.+|.+..++|......+....        ..+....++.|++...     .......||+.+++|+.+++.
T Consensus       161 ~---~~~~~~~~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (288)
T d1zgka1         161 N---RLNSAECYYPERNEWRMITAMNTIRS--------GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM  229 (288)
T ss_dssp             C---BCCCEEEEETTTTEEEECCCCSSCCB--------SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred             c---ccceEEEeeccccccccccccccccc--------cccccceeeeEEEecCccccccccceeeeeecceeeecccCc
Confidence            2   24567888777889998766554211        1223334566776532     235789999999999999876


Q ss_pred             CC
Q 015502          382 PV  383 (405)
Q Consensus       382 p~  383 (405)
                      |.
T Consensus       230 p~  231 (288)
T d1zgka1         230 KH  231 (288)
T ss_dssp             SS
T ss_pred             cC
Confidence            64

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.37  E-value=2.9e-12  Score=118.10  Aligned_cols=287  Identities=11%  Similarity=0.081  Sum_probs=161.3

Q ss_pred             hhHhhhcChhhhhhhcccCCCCCEEEEEecCCC--------C--eeEEecCCCCeeeeccCCCCCCCCe---EEEecCce
Q 015502           71 RWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDE--------P--IGYAYDPILRKWYGIELPCIETSNW---FIASSYGL  137 (405)
Q Consensus        71 ~W~~~i~~~~F~~~~~~~~~~~p~l~~~~~~~~--------~--~~~~~d~~~~~w~~~~~p~~~~~~~---~~~s~~Gl  137 (405)
                      +|...+.-|. ...|....+..-.++++.....        .  ....||+.+++|...+....++..+   .....+|.
T Consensus        10 ~W~~~~~~p~-~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~   88 (387)
T d1k3ia3          10 RWGPTIDLPI-VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ   88 (387)
T ss_dssp             EEEEEEECSS-CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC
T ss_pred             ccCCcCCCCc-cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc
Confidence            4666555442 2334333344455655543211        1  2467999999998765433333322   34446888


Q ss_pred             EEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCC
Q 015502          138 VCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMM  217 (405)
Q Consensus       138 l~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~  217 (405)
                      +++.++...+.+.+|||.|++|..+|.++..+..  ..++...|.     +|+++++.......   ...+++||..+++
T Consensus        89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~--~~~~~~~dG-----~v~v~GG~~~~~~~---~~~v~~yd~~~~~  158 (387)
T d1k3ia3          89 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY--QSSATMSDG-----RVFTIGGSWSGGVF---EKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS--CEEEECTTS-----CEEEECCCCCSSSC---CCCEEEEETTTTE
T ss_pred             EEEeecCCCcceeEecCccCcccccccccccccc--cceeeecCC-----ceeeeccccccccc---cceeeeecCCCCc
Confidence            8888776667899999999999999998865522  222222222     67777764322221   3478999999999


Q ss_pred             ccccccc-cccccc--------CCCcc-EEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhccccccc-CCc
Q 015502          218 WVTSWKE-VLTGWR--------AGDES-IIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPV-PCA  284 (405)
Q Consensus       218 W~~~~~~-~~~~~~--------~~~~~-v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~-p~~  284 (405)
                      |...... ......        ..... ++.  +|.+|..+..        ...+..||+.+..|........... +..
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS--------TAMNWYYTSGSGDVKSAGKRQSNRGVAPD  230 (387)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS--------SEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred             eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc--------CCcEEecCcccCcEeeccccccCcccCcc
Confidence            9875421 111100        01111 121  6777776532        2478889999999864311100000 000


Q ss_pred             cccC---ceEEeCCcEEEEEccccccccCccceEEEEEEeC-----ceeEEEeccChhHHhccCCCCceeEEeeCCCEEE
Q 015502          285 LTCG---RLMNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNG-----KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIY  356 (405)
Q Consensus       285 ~~~~---~l~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~-----~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~  356 (405)
                      ....   .+...+|+++++++..............+..+..     ..|..+..||.....       .-++...++.||
T Consensus       231 ~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~-------~~~~~~~dg~i~  303 (387)
T d1k3ia3         231 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-------HTSVVLPDGSTF  303 (387)
T ss_dssp             CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS-------CEEEECTTSCEE
T ss_pred             cccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccccccc-------ceeeeccCCeEE
Confidence            0111   1223579999998864332222233445554442     356666667653211       112222345577


Q ss_pred             EEeCC-----------CCeEEEEECCCCcEEEccCCCC
Q 015502          357 IQSYG-----------APSLLVYDMNLKQWRWSHKCPV  383 (405)
Q Consensus       357 ~~~~~-----------~~~~~~Yd~~~~~w~~l~~~p~  383 (405)
                      +....           ...+.+||+++++|+.++++|.
T Consensus       304 v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~  341 (387)
T d1k3ia3         304 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI  341 (387)
T ss_dssp             EECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred             EECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCC
Confidence            65321           1257899999999999998775

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.5e-12  Score=76.62  Aligned_cols=40  Identities=30%  Similarity=0.596  Sum_probs=37.1

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhh
Q 015502           42 DLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRF   81 (405)
Q Consensus        42 ~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F   81 (405)
                      |..||+|++.+||++||.+++.+++.|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            4589999999999999999999999999999999998753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.13  E-value=4.9e-10  Score=102.81  Aligned_cols=208  Identities=11%  Similarity=-0.039  Sum_probs=127.4

Q ss_pred             eCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCC--CccccceEEEEEeCCCCCccccccccccccc
Q 015502          153 NPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTG--NFFQWELSIHIYDSDTMMWVTSWKEVLTGWR  230 (405)
Q Consensus       153 NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~--~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~  230 (405)
                      .|.+++|..++++|..+   ..+.++..+     -||+++|+.....  +.......+++||..+++|............
T Consensus         5 ~p~~g~W~~~~~~p~~~---~~~a~~~~~-----gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~   76 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVP---AAAAIEPTS-----GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM   76 (387)
T ss_dssp             CTTSCEEEEEEECSSCC---SEEEEETTT-----TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC
T ss_pred             CCCCCccCCcCCCCccc---cEEEEEeeC-----CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccc
Confidence            48899999888776433   111222212     2889888753221  1111234688999999999875321111111


Q ss_pred             CCCc-cEEECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceEE-eCCcEEEEEccccccc
Q 015502          231 AGDE-SIICDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLMN-LKEKLVMVGGIGKQDR  308 (405)
Q Consensus       231 ~~~~-~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~~-~~G~L~~v~~~~~~~~  308 (405)
                      .... .+..+|++|+.++..       ...+..||+.+++|..     ...+|..+.....+. .+|+++++++....  
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~-------~~~~~~yd~~~~~w~~-----~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~--  142 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGND-------AKKTSLYDSSSDSWIP-----GPDMQVARGYQSSATMSDGRVFTIGGSWSG--  142 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSS-------TTCEEEEEGGGTEEEE-----CCCCSSCCSSCEEEECTTSCEEEECCCCCS--
T ss_pred             ceeEEEEecCCcEEEeecCC-------CcceeEecCccCcccc-----cccccccccccceeeecCCceeeecccccc--
Confidence            1222 233499999987532       2468899999999974     345555554444444 47899999885322  


Q ss_pred             cCccceEEEEEEeCceeEEEeccChhHHhcc------CCCCceeEEeeCCCEEEEEeCCCCeEEEEECCCCcEEEccCCC
Q 015502          309 PDIIKGIGIWVLNGKEWQEVARMPHKFFQGF------GEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNLKQWRWSHKCP  382 (405)
Q Consensus       309 ~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~~~w~~l~~~p  382 (405)
                      ......+++|++..++|+.+..++.......      ......+.+...++.+|+..........||..+..|..++..+
T Consensus       143 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  222 (387)
T d1k3ia3         143 GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ  222 (387)
T ss_dssp             SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECE
T ss_pred             ccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccc
Confidence            2235678999999999999877654322110      0011223334455666665545568899999999999876544

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.4e-08  Score=71.99  Aligned_cols=45  Identities=20%  Similarity=0.420  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhhhhc
Q 015502           42 DLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFS   86 (405)
Q Consensus        42 ~~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~~~~   86 (405)
                      .+.||+||+..||+.|+++|++++++|||+|+.++.++.+-+...
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~   63 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            347999999999999999999999999999999999988765443

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=5.2e-08  Score=70.55  Aligned_cols=39  Identities=23%  Similarity=0.485  Sum_probs=35.2

Q ss_pred             CCCCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcC-hhh
Q 015502           43 LILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSS-RRF   81 (405)
Q Consensus        43 ~~LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~-~~F   81 (405)
                      +.||+||+.+||+.|++++|++++.|||+|+.++.+ +.+
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            469999999999999999999999999999999864 553

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.9e-07  Score=68.04  Aligned_cols=40  Identities=30%  Similarity=0.490  Sum_probs=35.7

Q ss_pred             CCHHHHHHHHhcCChhhhHHHhhcchhhHhhhcChhhhhh
Q 015502           45 LPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWN   84 (405)
Q Consensus        45 LP~dll~~Il~~Lp~~~l~r~r~VcK~W~~~i~~~~F~~~   84 (405)
                      |++||+..||+.|+++||+++..|||.|+.+++++.+-+.
T Consensus        18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~   57 (118)
T d1p22a1          18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK   57 (118)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            4469999999999999999999999999999998876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.01  E-value=0.73  Score=38.98  Aligned_cols=230  Identities=14%  Similarity=0.112  Sum_probs=107.3

Q ss_pred             cCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeC
Q 015502          134 SYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDS  213 (405)
Q Consensus       134 ~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s  213 (405)
                      ..|-|++.+.. ..+++.+||.+++......... .    ...++.+++..   +++++......     ....+..++.
T Consensus        49 ~~G~Ly~~D~~-~g~I~ri~p~g~~~~~~~~~~~-~----~p~gla~~~dG---~l~va~~~~~~-----~~~~i~~~~~  114 (319)
T d2dg1a1          49 RQGQLFLLDVF-EGNIFKINPETKEIKRPFVSHK-A----NPAAIKIHKDG---RLFVCYLGDFK-----STGGIFAATE  114 (319)
T ss_dssp             TTSCEEEEETT-TCEEEEECTTTCCEEEEEECSS-S----SEEEEEECTTS---CEEEEECTTSS-----SCCEEEEECT
T ss_pred             CCCCEEEEECC-CCEEEEEECCCCeEEEEEeCCC-C----CeeEEEECCCC---CEEEEecCCCc-----cceeEEEEcC
Confidence            34666666543 4678899999986554321111 1    12356666654   34443321100     0224566666


Q ss_pred             CCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE
Q 015502          214 DTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM  291 (405)
Q Consensus       214 ~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~  291 (405)
                      .++........... ... .+.+.+  +|.+|+-....  ........+..+++.......+.  ..+..|.     .++
T Consensus       115 ~~~~~~~~~~~~~~-~~~-~nd~~~d~~G~l~vtd~~~--~~~~~~g~v~~~~~dg~~~~~~~--~~~~~pn-----Gia  183 (319)
T d2dg1a1         115 NGDNLQDIIEDLST-AYC-IDDMVFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPII--QNISVAN-----GIA  183 (319)
T ss_dssp             TSCSCEEEECSSSS-CCC-EEEEEECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEEE--EEESSEE-----EEE
T ss_pred             CCceeeeeccCCCc-ccC-CcceeEEeccceeeccccc--ccccCcceeEEEecccceeEEEe--eccceee-----eee
Confidence            55554332211110 111 112222  78877754221  11222356888888776543211  1112221     233


Q ss_pred             E-eCC-cEEEEEccccccccCccceEEEEEEeCc---eeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEE
Q 015502          292 N-LKE-KLVMVGGIGKQDRPDIIKGIGIWVLNGK---EWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL  366 (405)
Q Consensus       292 ~-~~G-~L~~v~~~~~~~~~~~~~~~~vw~l~~~---~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  366 (405)
                      . -+| .||+....        ..++..|.++..   ........+... .... ..+-+++...| .||+.......+.
T Consensus       184 ~s~dg~~lyvad~~--------~~~I~~~d~~~~g~~~~~~~~~~~~~~-~~~~-~PdGl~vD~~G-~l~Va~~~~g~V~  252 (319)
T d2dg1a1         184 LSTDEKVLWVTETT--------ANRLHRIALEDDGVTIQPFGATIPYYF-TGHE-GPDSCCIDSDD-NLYVAMYGQGRVL  252 (319)
T ss_dssp             ECTTSSEEEEEEGG--------GTEEEEEEECTTSSSEEEEEEEEEEEC-CSSS-EEEEEEEBTTC-CEEEEEETTTEEE
T ss_pred             eccccceEEEeccc--------CCceEEEEEcCCCceeccccceeeecc-CCcc-ceeeeeEcCCC-CEEEEEcCCCEEE
Confidence            3 345 57877653        345777777742   222211111100 0000 01233444444 5888776678999


Q ss_pred             EEECCCCcEEEccCCCCCCCCcccceeeeeecee
Q 015502          367 VYDMNLKQWRWSHKCPVTKRFPLQLFTGFCFEPR  400 (405)
Q Consensus       367 ~Yd~~~~~w~~l~~~p~~~~~~~~~~~~~~~~p~  400 (405)
                      +||++.+....+ .+|....-.....++++|.|.
T Consensus       253 ~~~p~G~~l~~i-~~P~~~~~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         253 VFNKRGYPIGQI-LIPGRDEGHMLRSTHPQFIPG  285 (319)
T ss_dssp             EECTTSCEEEEE-ECTTGGGTCSCBCCEEEECTT
T ss_pred             EECCCCcEEEEE-eCCCcCCCcCceeeeEEEeCC
Confidence            999987666666 334221111122346666553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.19  E-value=6.4  Score=31.82  Aligned_cols=199  Identities=11%  Similarity=0.095  Sum_probs=92.5

Q ss_pred             EEecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEE
Q 015502          131 IASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHI  210 (405)
Q Consensus       131 ~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~v  210 (405)
                      ..+.+|-|++.+.. ..++.++|+-..--...+..............+..+...+.+.+.. .+.         ...+..
T Consensus        29 avd~dg~i~VaD~~-n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~---------~~~i~~   97 (279)
T d1q7fa_          29 AVNAQNDIIVADTN-NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE-RSP---------THQIQI   97 (279)
T ss_dssp             EECTTCCEEEEEGG-GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE-CGG---------GCEEEE
T ss_pred             EEcCCCCEEEEECC-CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceec-cCC---------cccccc
Confidence            33456778877643 4778899986443333443221111112223344444434442222 211         235666


Q ss_pred             EeCCCCCcccccccccccccCCCccEEE--CcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccC
Q 015502          211 YDSDTMMWVTSWKEVLTGWRAGDESIIC--DGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCG  288 (405)
Q Consensus       211 y~s~~~~W~~~~~~~~~~~~~~~~~v~~--~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~  288 (405)
                      ++.....++......    ......+.+  +|.+|+....        ...+..||.....-..      ...+......
T Consensus        98 ~~~~g~~~~~~~~~~----~~~p~~~avd~~G~i~v~~~~--------~~~~~~~~~~g~~~~~------~g~~~~~~~~  159 (279)
T d1q7fa_          98 YNQYGQFVRKFGATI----LQHPRGVTVDNKGRIIVVECK--------VMRVIIFDQNGNVLHK------FGCSKHLEFP  159 (279)
T ss_dssp             ECTTSCEEEEECTTT----CSCEEEEEECTTSCEEEEETT--------TTEEEEECTTSCEEEE------EECTTTCSSE
T ss_pred             ccccccceeecCCCc----ccccceeccccCCcEEEEeec--------cceeeEeccCCceeec------cccccccccc
Confidence            766544444332111    111122333  6778877532        2478888876543221      1111111111


Q ss_pred             -ce-EEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC-CCCeE
Q 015502          289 -RL-MNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-GAPSL  365 (405)
Q Consensus       289 -~l-~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~  365 (405)
                       .+ +..+|.||++...        ...+.+|..+......+..-.  .+.    ...-+++...|+ ||+... ....+
T Consensus       160 ~~i~~d~~g~i~v~d~~--------~~~V~~~d~~G~~~~~~g~~g--~~~----~P~giavD~~G~-i~Vad~~~~~~v  224 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNR--------AHCVKVFNYEGQYLRQIGGEG--ITN----YPIGVGINSNGE-ILIADNHNNFNL  224 (279)
T ss_dssp             EEEEECSSSEEEEEEGG--------GTEEEEEETTCCEEEEESCTT--TSC----SEEEEEECTTCC-EEEEECSSSCEE
T ss_pred             ceeeeccceeEEeeecc--------ccceeeeecCCceeeeecccc--ccc----CCcccccccCCe-EEEEECCCCcEE
Confidence             22 2346789888753        245777765544333332110  010    111233344565 777643 34568


Q ss_pred             EEEECCCC
Q 015502          366 LVYDMNLK  373 (405)
Q Consensus       366 ~~Yd~~~~  373 (405)
                      .+|+.+-+
T Consensus       225 ~~f~~~G~  232 (279)
T d1q7fa_         225 TIFTQDGQ  232 (279)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCC
Confidence            89997644

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=86.98  E-value=1.2  Score=36.90  Aligned_cols=71  Identities=10%  Similarity=0.101  Sum_probs=47.9

Q ss_pred             eCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEEEEECCC
Q 015502          293 LKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLLVYDMNL  372 (405)
Q Consensus       293 ~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Yd~~~  372 (405)
                      .+|+.++++..        ...+.||+++..+=.....++...      ...-+++..+|..+|+.......+.+||+++
T Consensus         6 ~~~~~l~~~~~--------~~~v~v~D~~t~~~~~t~~~~~~~------~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t   71 (346)
T d1jmxb_           6 AGHEYMIVTNY--------PNNLHVVDVASDTVYKSCVMPDKF------GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT   71 (346)
T ss_dssp             TTCEEEEEEET--------TTEEEEEETTTTEEEEEEECSSCC------SSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCCcEEEEEcC--------CCEEEEEECCCCCEEEEEEcCCCC------CcceEEECCCCCEEEEEECCCCcEEEEeCcc
Confidence            35666666653        256999999987655545555421      1123455668889999876678999999999


Q ss_pred             CcEEE
Q 015502          373 KQWRW  377 (405)
Q Consensus       373 ~~w~~  377 (405)
                      ++-..
T Consensus        72 ~~~~~   76 (346)
T d1jmxb_          72 CKNTF   76 (346)
T ss_dssp             TEEEE
T ss_pred             Ceeee
Confidence            86543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=85.59  E-value=3.4  Score=37.79  Aligned_cols=119  Identities=13%  Similarity=0.114  Sum_probs=63.5

Q ss_pred             CccEEECcEEEeeEEecCCCCCCCccEEEEEECCCCc--chhhhcccc---cccCCccccCceEEeCCcEEEEEcccccc
Q 015502          233 DESIICDGVLYFLIYATGGGAPENRHGLISFNLSSRS--SHALLIKSF---IPVPCALTCGRLMNLKEKLVMVGGIGKQD  307 (405)
Q Consensus       233 ~~~v~~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~--w~~~~~~~~---~~~p~~~~~~~l~~~~G~L~~v~~~~~~~  307 (405)
                      ..+++.+|+||+-...         ..|+++|.+|.+  |+.-.....   ...........+..++++|++....    
T Consensus        60 stPiv~~g~vyv~t~~---------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----  126 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMSW---------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD----  126 (560)
T ss_dssp             CCCEEETTEEEEEEGG---------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT----
T ss_pred             eCCEEECCEEEEECCC---------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC----
Confidence            4689999999987643         489999998865  541000000   0001111234566778888877642    


Q ss_pred             ccCccceEEEEEEeC----ceeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeC-----CCCeEEEEECCCCcEEE
Q 015502          308 RPDIIKGIGIWVLNG----KEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSY-----GAPSLLVYDMNLKQWRW  377 (405)
Q Consensus       308 ~~~~~~~~~vw~l~~----~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~Yd~~~~~w~~  377 (405)
                             -.++.|+.    ..|+....-+..... .  ...   -...++.|++...     ....+..||.+|++-.+
T Consensus       127 -------g~l~Alda~tG~~~w~~~~~~~~~~~~-~--~~~---p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         127 -------GRLIALDAKTGKAIWSQQTTDPAKPYS-I--TGA---PRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             -------SEEEEEETTTCCEEEEEECSCTTSSCB-C--CSC---CEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             -------CEEEEEECCCCcEEeccCccCccccee-e--eee---eeeecCcccccccceeccccceEEEEECCCceEEe
Confidence                   34666662    357654322211100 0  001   1124566666432     12479999999995444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=84.85  E-value=9.3  Score=31.55  Aligned_cols=195  Identities=11%  Similarity=0.107  Sum_probs=91.0

Q ss_pred             ceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCCCCccccccccc
Q 015502          147 SELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVL  226 (405)
Q Consensus       147 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  226 (405)
                      .+++.+||.++++.....+.... ..-...++.+++..+.  +++...          ...+..++...+..........
T Consensus        46 g~I~r~d~~~~~~~~~~~~~~~~-~~g~P~Gl~~~~dg~~--l~vad~----------~~~i~~~~~~g~~~~~~~~~~~  112 (314)
T d1pjxa_          46 GEILRIDLKTGKKTVICKPEVNG-YGGIPAGCQCDRDANQ--LFVADM----------RLGLLVVQTDGTFEEIAKKDSE  112 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETT-EECCEEEEEECSSSSE--EEEEET----------TTEEEEEETTSCEEECCSBCTT
T ss_pred             CEEEEEECCCCcEEEEECCcccc-CCCcceeEEEeCCCCE--EEEEEC----------CCeEEEEeCCCcEEEEEecccc
Confidence            56899999999876654322111 1111346667665432  343321          1256777776554333221100


Q ss_pred             -ccccCCCccEEE--CcEEEeeEEecCC-------CCCCCccEEEEEECCCCcchhhhcccccccCCccccCceE-EeCC
Q 015502          227 -TGWRAGDESIIC--DGVLYFLIYATGG-------GAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGRLM-NLKE  295 (405)
Q Consensus       227 -~~~~~~~~~v~~--~g~iy~l~~~~~~-------~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~l~-~~~G  295 (405)
                       ...... +.+.+  +|.+|+-......       ........+..+++.... ..+  ...+..|.     .++ ..++
T Consensus       113 g~~~~~p-ndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~-~~~--~~~~~~pN-----Gi~~~~d~  183 (314)
T d1pjxa_         113 GRRMQGC-NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQV--DTAFQFPN-----GIAVRHMN  183 (314)
T ss_dssp             SCBCBCC-CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE-EEE--EEEESSEE-----EEEEEECT
T ss_pred             ccccCCC-cEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCce-eEe--eCCcceee-----eeEECCCC
Confidence             011111 22333  6888875422111       011223468888875432 211  01112221     122 2222


Q ss_pred             -----cEEEEEccccccccCccceEEEEEEeCc---eeEE-EeccChhHHhccCCCCceeEEeeCCCEEEEEeCCCCeEE
Q 015502          296 -----KLVMVGGIGKQDRPDIIKGIGIWVLNGK---EWQE-VARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGAPSLL  366 (405)
Q Consensus       296 -----~L~~v~~~~~~~~~~~~~~~~vw~l~~~---~W~~-v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  366 (405)
                           .||+....        ...+..|.++..   .+.+ ...++.....    ..+-+++...| .||+.......+.
T Consensus       184 d~~~~~lyv~d~~--------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~----~pdGiavD~~G-nlyVa~~~~g~I~  250 (314)
T d1pjxa_         184 DGRPYQLIVAETP--------TKKLWSYDIKGPAKIENKKVWGHIPGTHEG----GADGMDFDEDN-NLLVANWGSSHIE  250 (314)
T ss_dssp             TSCEEEEEEEETT--------TTEEEEEEEEETTEEEEEEEEEECCCCSSC----EEEEEEEBTTC-CEEEEEETTTEEE
T ss_pred             CcceeEEEEEeec--------ccceEEeeccCccccceeeEEEEccccccc----cceeeEEecCC-cEEEEEcCCCEEE
Confidence                 47766542        234666666632   2222 2333221000    01223433344 5788766677999


Q ss_pred             EEECCCCcEE
Q 015502          367 VYDMNLKQWR  376 (405)
Q Consensus       367 ~Yd~~~~~w~  376 (405)
                      +||+++++..
T Consensus       251 ~~dp~~g~~~  260 (314)
T d1pjxa_         251 VFGPDGGQPK  260 (314)
T ss_dssp             EECTTCBSCS
T ss_pred             EEeCCCCEEE
Confidence            9999988653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.72  E-value=10  Score=31.00  Aligned_cols=200  Identities=11%  Similarity=0.015  Sum_probs=92.8

Q ss_pred             ecCceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEe
Q 015502          133 SSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYD  212 (405)
Q Consensus       133 s~~Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~  212 (405)
                      ..+|-|+..+.. ...++.+||.+++....+.+.     ....+++.  ..  . .+++..           ...+..||
T Consensus        27 ~~~~~l~wvDi~-~~~I~r~d~~~g~~~~~~~~~-----~~~~i~~~--~d--g-~l~va~-----------~~gl~~~d   84 (295)
T d2ghsa1          27 PASGTAWWFNIL-ERELHELHLASGRKTVHALPF-----MGSALAKI--SD--S-KQLIAS-----------DDGLFLRD   84 (295)
T ss_dssp             TTTTEEEEEEGG-GTEEEEEETTTTEEEEEECSS-----CEEEEEEE--ET--T-EEEEEE-----------TTEEEEEE
T ss_pred             CCCCEEEEEECC-CCEEEEEECCCCeEEEEECCC-----CcEEEEEe--cC--C-CEEEEE-----------eCccEEee
Confidence            345656666533 367899999998776554321     11223332  22  1 333322           12688899


Q ss_pred             CCCCCcccccccccccccC--CCccEE-ECcEEEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCccccCc
Q 015502          213 SDTMMWVTSWKEVLTGWRA--GDESII-CDGVLYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCALTCGR  289 (405)
Q Consensus       213 s~~~~W~~~~~~~~~~~~~--~~~~v~-~~g~iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~~~~~~  289 (405)
                      ..+++.+..... ......  ....++ -+|.+|+-.....  .......+..+  .+.+...+      ........+-
T Consensus        85 ~~tg~~~~l~~~-~~~~~~~~~nd~~vd~~G~iw~~~~~~~--~~~~~g~l~~~--~~g~~~~~------~~~~~~~Ng~  153 (295)
T d2ghsa1          85 TATGVLTLHAEL-ESDLPGNRSNDGRMHPSGALWIGTMGRK--AETGAGSIYHV--AKGKVTKL------FADISIPNSI  153 (295)
T ss_dssp             TTTCCEEEEECS-STTCTTEEEEEEEECTTSCEEEEEEETT--CCTTCEEEEEE--ETTEEEEE------EEEESSEEEE
T ss_pred             cccceeeEEeee-ecCCCcccceeeEECCCCCEEEEecccc--ccccceeEeee--cCCcEEEE------eeccCCccee
Confidence            999888664321 111110  111222 2777766543321  11122234333  33332211      1111111111


Q ss_pred             eEEeCC-cEEEEEccccccccCccceEEEEEEeCc------eeEEEeccChhHHhccCCCCceeEEeeCCCEEEEEeCCC
Q 015502          290 LMNLKE-KLVMVGGIGKQDRPDIIKGIGIWVLNGK------EWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGA  362 (405)
Q Consensus       290 l~~~~G-~L~~v~~~~~~~~~~~~~~~~vw~l~~~------~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  362 (405)
                      ....++ .||++...        ...+..|.++..      +-.....++..     ....+-+++ ..++.||+.....
T Consensus       154 ~~s~d~~~l~~~dt~--------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~-----~g~pdG~~v-D~~GnlWva~~~~  219 (295)
T d2ghsa1         154 CFSPDGTTGYFVDTK--------VNRLMRVPLDARTGLPTGKAEVFIDSTGI-----KGGMDGSVC-DAEGHIWNARWGE  219 (295)
T ss_dssp             EECTTSCEEEEEETT--------TCEEEEEEBCTTTCCBSSCCEEEEECTTS-----SSEEEEEEE-CTTSCEEEEEETT
T ss_pred             eecCCCceEEEeecc--------cceeeEeeecccccccccceEEEeccCcc-----cccccceEE-cCCCCEEeeeeCC
Confidence            222334 46666542        344666666631      11222222211     000122233 3445677765556


Q ss_pred             CeEEEEECCCCcEEEcc
Q 015502          363 PSLLVYDMNLKQWRWSH  379 (405)
Q Consensus       363 ~~~~~Yd~~~~~w~~l~  379 (405)
                      ..+.+||++.+....++
T Consensus       220 g~V~~~dp~G~~~~~i~  236 (295)
T d2ghsa1         220 GAVDRYDTDGNHIARYE  236 (295)
T ss_dssp             TEEEEECTTCCEEEEEE
T ss_pred             CceEEecCCCcEeeEec
Confidence            78999999988888773

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=82.60  E-value=14  Score=31.90  Aligned_cols=195  Identities=9%  Similarity=-0.011  Sum_probs=95.0

Q ss_pred             ceEEEEeCCCCceEEEEeCcccceeeccCCCCCCCCccceeEEEEeCCCCcEEEEEEeeeccCCCccccceEEEEEeCCC
Q 015502          136 GLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDT  215 (405)
Q Consensus       136 Gll~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~~~~~~~~vy~s~~  215 (405)
                      .++++.. ...+.+.|+|+.|++...--+.  ..    ...++.+.|+. +| +++.+.          .-.+.+||..+
T Consensus        32 ~~~~v~~-~d~g~v~v~D~~t~~v~~~~~~--g~----~~~~v~fSpDG-~~-l~~~s~----------dg~v~~~d~~t   92 (432)
T d1qksa2          32 NLFSVTL-RDAGQIALIDGSTYEIKTVLDT--GY----AVHISRLSASG-RY-LFVIGR----------DGKVNMIDLWM   92 (432)
T ss_dssp             GEEEEEE-TTTTEEEEEETTTCCEEEEEEC--SS----CEEEEEECTTS-CE-EEEEET----------TSEEEEEETTS
T ss_pred             cEEEEEE-cCCCEEEEEECCCCcEEEEEeC--CC----CeeEEEECCCC-CE-EEEEcC----------CCCEEEEEeeC
Confidence            3444433 3358899999999988663221  11    12344555543 33 233321          12788999877


Q ss_pred             CCcccccccccccccCCCccEEE------CcE-EEeeEEecCCCCCCCccEEEEEECCCCcchhhhcccccccCCc----
Q 015502          216 MMWVTSWKEVLTGWRAGDESIIC------DGV-LYFLIYATGGGAPENRHGLISFNLSSRSSHALLIKSFIPVPCA----  284 (405)
Q Consensus       216 ~~W~~~~~~~~~~~~~~~~~v~~------~g~-iy~l~~~~~~~~~~~~~~i~~fD~~~~~w~~~~~~~~~~~p~~----  284 (405)
                      +.-.... .++...  .+..+..      +|+ +|+-+...        ..+..+|.++.+-...     ......    
T Consensus        93 ~~~~~~~-~i~~~~--~~~~~~~s~~~SpDG~~l~vs~~~~--------~~v~i~d~~t~~~~~~-----~~~~~~~~~~  156 (432)
T d1qksa2          93 KEPTTVA-EIKIGS--EARSIETSKMEGWEDKYAIAGAYWP--------PQYVIMDGETLEPKKI-----QSTRGMTYDE  156 (432)
T ss_dssp             SSCCEEE-EEECCS--EEEEEEECCSTTCTTTEEEEEEEET--------TEEEEEETTTCCEEEE-----EECCEECTTT
T ss_pred             CCceEEE-EEecCC--CCCCeEEecccCCCCCEEEEEcCCC--------CeEEEEeCccccceee-----eccCCccccc
Confidence            7654321 111110  0111111      454 55554432        4788899887763211     111100    


Q ss_pred             --c--ccCc--e-EEeCCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeEEeeCCCEEEE
Q 015502          285 --L--TCGR--L-MNLKEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFASSGTDDLIYI  357 (405)
Q Consensus       285 --~--~~~~--l-~~~~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  357 (405)
                        .  ....  + ...+|+.+++....       ...+.+|...+.+-.++..++..      ....-+++...|..+++
T Consensus       157 ~~~~~~~~~~~v~~s~dg~~~~vs~~~-------~~~i~~~d~~~~~~~~~~~i~~g------~~~~~~~~spdg~~~~v  223 (432)
T d1qksa2         157 QEYHPEPRVAAILASHYRPEFIVNVKE-------TGKILLVDYTDLNNLKTTEISAE------RFLHDGGLDGSHRYFIT  223 (432)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETT-------TTEEEEEETTCSSEEEEEEEECC------SSEEEEEECTTSCEEEE
T ss_pred             eeccCCCceeEEEECCCCCEEEEEEcc-------CCeEEEEEccCCCcceEEEEccc------CccccceECCCCCEEEE
Confidence              0  0111  1 12345555554321       23466665554333333333321      00112345567777777


Q ss_pred             EeCCCCeEEEEECCCCcEEEc
Q 015502          358 QSYGAPSLLVYDMNLKQWRWS  378 (405)
Q Consensus       358 ~~~~~~~~~~Yd~~~~~w~~l  378 (405)
                      .......+.+.|.++++....
T Consensus       224 a~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         224 AANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             EEGGGTEEEEEETTTTEEEEE
T ss_pred             eccccceEEEeecccceEEEE
Confidence            766666888888888776554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=80.90  E-value=12  Score=30.13  Aligned_cols=59  Identities=8%  Similarity=-0.059  Sum_probs=37.0

Q ss_pred             CCeeEEecCCCCeee-eccCCCCCCCCeEEEecCceEEEEeCCCCceEEEEeCcccceee
Q 015502          103 EPIGYAYDPILRKWY-GIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKK  161 (405)
Q Consensus       103 ~~~~~~~d~~~~~w~-~~~~p~~~~~~~~~~s~~Gll~~~~~~~~~~~~v~NP~T~~~~~  161 (405)
                      ......+|..+++-. .+++|.......+.-+-+|..++......+.+.+||..|++-..
T Consensus        17 ~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_          17 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            346778999888753 34555433333455566665443333335789999999987764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.06  E-value=12  Score=29.64  Aligned_cols=67  Identities=16%  Similarity=0.256  Sum_probs=38.9

Q ss_pred             CCcEEEEEccccccccCccceEEEEEEeCceeEEEeccChhHHhccCCCCceeE--EeeCCCEEEEEeCCCCeEEEEECC
Q 015502          294 KEKLVMVGGIGKQDRPDIIKGIGIWVLNGKEWQEVARMPHKFFQGFGEFDDVFA--SSGTDDLIYIQSYGAPSLLVYDMN  371 (405)
Q Consensus       294 ~G~L~~v~~~~~~~~~~~~~~~~vw~l~~~~W~~v~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~Yd~~  371 (405)
                      +|++++++..        ...+.+|+++..+..++..+.+.        ..+.+  +...++.++... .+..+.+||+.
T Consensus       147 ~~~~l~~g~~--------dg~i~~~d~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~  209 (299)
T d1nr0a2         147 DKQFVAVGGQ--------DSKVHVYKLSGASVSEVKTIVHP--------AEITSVAFSNNGAFLVATD-QSRKVIPYSVA  209 (299)
T ss_dssp             TSCEEEEEET--------TSEEEEEEEETTEEEEEEEEECS--------SCEEEEEECTTSSEEEEEE-TTSCEEEEEGG
T ss_pred             cccccccccc--------ccccccccccccccccccccccc--------ccccccccccccccccccc-ccccccccccc
Confidence            5666666653        24599999987765544333211        12222  234555555543 46689999998


Q ss_pred             CCcEEE
Q 015502          372 LKQWRW  377 (405)
Q Consensus       372 ~~~w~~  377 (405)
                      ++....
T Consensus       210 ~~~~~~  215 (299)
T d1nr0a2         210 NNFELA  215 (299)
T ss_dssp             GTTEES
T ss_pred             cccccc
Confidence            876543