Citrus Sinensis ID: 015523

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MESVSVTVSSFISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS
Secondary Structure (PSIPRED)
ccccccHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEcccccEEEEcccEEEccccccccccccccEEEEccccHHHHHHHccHHHHHHHHHHHHcccEEEEEcccHHHHcccccccccccEEEcccccccccccEEEEccEEEEccEEcccccccHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEcccccEEEccccEEEEcccccccccccccEEEEccccHHHHHHHccHHHHHHHHHHHHcccEEEEEccHHHHHHHccccccccEEccccccccccccEEEcccEEEcccEEccccccHHHHHHHHHHHHHccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHcccccccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEccccEEEEcccEEEEEcccHHHHccccccEEEEccccccHHHHcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccccccEEEcccccHHHccccccccccEEEEccEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccEEEcccHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccEEcccccEEEccEEHHHHccccccEEEEcccHHHHHHHHHcHHHHHHHHHHHHcccEEEEEccccHHHHHcccccccEEcccHHHHHHHcccccccccEEEcccEEEccccccHHHHHHHHHHHHccHHHHHHHHcccEEccccc
Coil and Loop (DISEMBL)
MESVSVTVSsfispsfalnvlvpvgfgteeMEAVIIVDVLRRAGAQvtmasvepqleveassgtrlvadtsisncshQVFDlialpggmpgsvrlrDCEILKKITSKQAEEKRLYGAicaapavtllpwgllrrkqitchpaftdklptfwavksnihvsgevttsrgpgtsFEFALCLVEQLFGESVAKEIGELLLMHnadnslkkeefnevewffdrmprvlipiangseeiEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIilpggvagaERLQKSRILKKLLKEQKVAGRIygavcsspivlhkhgllkakkatahpsvigkltnevVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGlvfeyprs
Flexible Loop (DISEMBL)
MESVSVTVssfispsfalNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMasvepqleveASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLipiangseeiEIVTIVDILRRAKVDVVVASVerstqivasqgvkiiaDKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKakkatahpsvigkltnevvngtkVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSvaeglvfeyprs
Low Complexity Region (SEG)
MESVSVTVSSFISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVlhkhgllkakkatahPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS
Disordered region (IsUnstruct)
*******VSSFISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE**********TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE****
Disordered Region (DISOPRED)
******************NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYP**
Disordered Region (DISEMBL)
*********SFISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS
Disordered Region (DISPRO)
***************FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESVSVTVSSFISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q8VY09	472	Protein DJ-1 homolog C OS	yes	no	0.953	0.817	0.679	1e-155
Q9MAH3	438	Protein DJ-1 homolog B OS	no	no	0.945	0.874	0.478	1e-100
Q9FPF0	392	Protein DJ-1 homolog A OS	no	no	0.928	0.959	0.457	2e-88
Q5XJ36	189	Protein DJ-1 OS=Danio rer	yes	no	0.441	0.947	0.380	8e-26
Q7TQ35	189	Protein DJ-1 OS=Mesocrice	N/A	no	0.441	0.947	0.375	5e-25
Q99LX0	189	Protein DJ-1 OS=Mus muscu	yes	no	0.441	0.947	0.380	2e-24
Q8UW59	189	Protein DJ-1 OS=Gallus ga	yes	no	0.441	0.947	0.369	5e-24
O88767	189	Protein DJ-1 OS=Rattus no	yes	no	0.441	0.947	0.375	8e-24
Q95LI9	189	Protein DJ-1 OS=Chloroceb	N/A	no	0.441	0.947	0.369	2e-23
Q99497	189	Protein DJ-1 OS=Homo sapi	yes	no	0.441	0.947	0.369	2e-23

>sp|Q8VY09|DJ1C_ARATH Protein DJ-1 homolog C OS=Arabidopsis thaliana GN=DJ1C PE=2 SV=1

 Score =  548 bits (1412), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/387 (67%), Positives = 314/387 (81%), Gaps = 1/387 (0%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 78
            VLVP+G+GTEE+EAV++VDVLRRAGA VT+ASVE +LEVE SSGTRL+AD  IS C+ Q
Sbjct: 85  KVLVPIGYGTEEIEAVVLVDVLRRAGADVTVASVEQKLEVEGSSGTRLLADVLISKCADQ 144

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
           V+DL+ALPGGMPG+VRLRDCEIL+KI  +QAE+KRLYGAI  APA+TLLPWGLL RK+ T
Sbjct: 145 VYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTT 204

Query: 139 CHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLM 198
            HPAF  KLPTFWAVK+NI +SGE+TTSRGPGTSF+FAL L EQLFGE+ AK I E LL+
Sbjct: 205 GHPAFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLL 264

Query: 199 HNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS 258
            +   + K +EFN ++W  D  PRVLIP+ANGSE +E+V+I D+LRRAKVDV V+SVERS
Sbjct: 265 RDGYQNPKNKEFNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRRAKVDVTVSSVERS 324

Query: 259 TQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIY 318
            +I A QG KII DK I +AAES YDLIILPGG  G+ERLQKS+ILKKLL+EQ  +GRIY
Sbjct: 325 LRITAFQGTKIITDKLIGEAAESSYDLIILPGGHTGSERLQKSKILKKLLREQHESGRIY 384

Query: 319 GAVCSSPIVLHKHGLLKAKKATAHPSVIGK-LTNEVVNGTKVVVDGKVITSRGLANVIDF 377
           GA  SS  VLHKHGLLK K+ T +PS   + +  +++ G +VV+DG VITS GLA V  F
Sbjct: 385 GATNSSSTVLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVVIDGNVITSLGLATVTKF 444

Query: 378 ALAIVSKFFGHARTRSVAEGLVFEYPR 404
           +LAIVSK FGHAR RSV+EGLV EYPR
Sbjct: 445 SLAIVSKLFGHARARSVSEGLVHEYPR 471

Plays an essential role in chloroplast development and is required for chloroplast integrity and viability.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B OS=Arabidopsis thaliana GN=DJ1B PE=2 SV=1

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/391 (47%), Positives = 267/391 (68%), Gaps = 8/391 (2%)

Query: 3   SVSVTVSSFISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS 62
           S+S T+SS         VL+PV  GTE  EAV+++DVLRR GA VT+ASVE Q+ V+A  
Sbjct: 43  SISATMSSSTK-----KVLIPVAHGTEPFEAVVMIDVLRRGGADVTVASVENQVGVDACH 97

Query: 63  GTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAP 122
           G ++VADT +S+ +  VFDLI LPGG+PG   L++C+ L+K+  KQ  + RL  AIC AP
Sbjct: 98  GIKMVADTLLSDITDSVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAP 157

Query: 123 AVTLLPWGLLRRKQITCHPAFTDKLPTF-WAVKSNIHVSGEVTTSRGPGTSFEFALCLVE 181
           A+    WGLL  K+ TC+P F +KL     AV+S + + G++ TSRGPGT+ EF++ LVE
Sbjct: 158 ALAFGTWGLLEGKKATCYPVFMEKLAACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVE 217

Query: 182 QLFGESVAKEI-GELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIV 240
           QL G+  A E+ G L++  N  +     E N+V W F+  P++L+PIA+GSEE+E V I+
Sbjct: 218 QLLGKEKAVEVSGPLVMRPNPGDEYTITELNQVSWSFEGTPQILVPIADGSEEMEAVAII 277

Query: 241 DILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 300
           D+L+RAK +VVVA++  S ++VAS+ VK++AD  + +A ++ YDLI+LPGG+ GAE    
Sbjct: 278 DVLKRAKANVVVAALGNSLEVVASRKVKLVADVLLDEAEKNSYDLIVLPGGLGGAEAFAS 337

Query: 301 SRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKV 359
           S  L  +LK+Q  + + YGA+C+SP +V   HGLLK KKATA P++  KLT++     +V
Sbjct: 338 SEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCSKLTDQSHIEHRV 397

Query: 360 VVDGKVITSRGLANVIDFALAIVSKFFGHAR 390
           +VDG +ITSRG    ++FALAIV KF+G  +
Sbjct: 398 LVDGNLITSRGPGTSLEFALAIVEKFYGREK 428

May be involved in oxidative stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FPF0|DJ1A_ARATH Protein DJ-1 homolog A OS=Arabidopsis thaliana GN=DJ1A PE=1 SV=1

 Score =  326 bits (836), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/380 (45%), Positives = 248/380 (65%), Gaps = 4/380 (1%)

Query: 15  SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISN 74
           SF   VL+P+  GTE +EAV ++ VLRR GA VT+ASVE Q+ V+A  G ++VADT +S+
Sbjct: 3   SFTKTVLIPIAHGTEPLEAVAMITVLRRGGADVTVASVETQVGVDACHGIKMVADTLLSD 62

Query: 75  CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 134
            +  VFDLI LPGG+PG   L++C+ L+ +  KQ  + RL  AIC APA+ L  WGLL  
Sbjct: 63  ITDSVFDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEG 122

Query: 135 KQITCHPAFTDKLPTFW--AVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 192
           K+ T +P F +KL      AV+S + + G + TSRGPGT+ EF++ L+EQLFG+  A E+
Sbjct: 123 KKATGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEV 182

Query: 193 GELLLMH-NADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVV 251
             +LL+  N        E N+  W F+  P++L+PIA  SEEIE + +VDILRRAK +VV
Sbjct: 183 SSILLLRPNPGEEFTFTELNQTNWSFEDTPQILVPIAEESEEIEAIALVDILRRAKANVV 242

Query: 252 VASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ 311
           +A+V  S ++  S+  K++A+  + + AE  +DLI+LPGG+ GA+R      L  +L++Q
Sbjct: 243 IAAVGNSLEVEGSRKAKLVAEVLLDEVAEKSFDLIVLPGGLNGAQRFASCEKLVNMLRKQ 302

Query: 312 KVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRG 370
             A + YG +C+SP  V   +GLLK KKAT HP V  KL+++     +VVVDG VITSR 
Sbjct: 303 AEANKPYGGICASPAYVFEPNGLLKGKKATTHPVVSDKLSDKSHIEHRVVVDGNVITSRA 362

Query: 371 LANVIDFALAIVSKFFGHAR 390
               ++F+LAIV KF+G  +
Sbjct: 363 PGTAMEFSLAIVEKFYGREK 382

Involved in oxidative stress response. Confers protection against diverse stresses by binding both CSD1 and GPX2 and mediating the cytosolic activation of the Cu-Zn-dependent superoxide dismutase activity of CSD1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XJ36|PARK7_DANRE Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1

 Score =  118 bits (296), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 5/184 (2%)

Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG  VT+A +  +  V+ S    +  D+S+ +   Q  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGP 66

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG+ G+  L +   +K++   Q   K L  AICA P   LL  G+     +T 
Sbjct: 67  YDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGP-TALLAHGIAYGSTVTT 125

Query: 140 HPAFTDKL---PTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G V TSRGPGTSFEFAL +VE+L G  VA ++   L
Sbjct: 126 HPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPL 185

Query: 197 LMHN 200
           ++ +
Sbjct: 186 ILKD 189

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone (By similarity). Protects dopaminergic neurons against cell death arising from oxidative stress and proteasome inhibition, probably by a TP53/p53-dependent mechanism.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q7TQ35|PARK7_MESAU Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 104/184 (56%), Gaps = 5/184 (2%)

Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VD++RRAG +VT+A +  +  V+ S    +  DTS+ +   Q  
Sbjct: 7   LVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKKQGP 66

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGP-TALLAHEIGFGSKVTT 125

Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+  A ++   L
Sbjct: 126 HPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVKAPL 185

Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mesocricetus auratus (taxid: 10036)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99LX0|PARK7_MOUSE Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 105/184 (57%), Gaps = 5/184 (2%)

Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  DTS+ +   Q  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGP 66

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGP-TALLAHEVGFGCKVTT 125

Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+ +A ++   L
Sbjct: 126 HPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPL 185

Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q8UW59|PARK7_CHICK Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 5/184 (2%)

Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI  DV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDARKEGP 66

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D+I LPGG  G+  L +   +K I   Q   K L  AICA P   LL  G+    ++  
Sbjct: 67  YDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGP-TALLAHGIGFGSKVIT 125

Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   +S +   G + TSRGPGTSFEF L +VE L G+ VA+++   L
Sbjct: 126 HPLAKDKMMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVKAPL 185

Query: 197 LMHN 200
           ++ +
Sbjct: 186 ILKD 189

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|O88767|PARK7_RAT Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1

 Score =  111 bits (278), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 104/184 (56%), Gaps = 5/184 (2%)

Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VD++RRAG +VT+A +  +  V+ S    +  DTS+     Q  
Sbjct: 7   LVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAKTQGP 66

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGP-TALLAHEVGFGCKVTS 125

Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+ +A ++   L
Sbjct: 126 HPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVKAPL 185

Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q95LI9|PARK7_CHLAE Protein DJ-1 OS=Chlorocebus aethiops GN=PARK7 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)

Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTIAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125

Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185

Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Chlorocebus aethiops (taxid: 9534)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99497|PARK7_HUMAN Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)

Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125

Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185

Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
225428824	447	PREDICTED: uncharacterized protein LOC10	0.955	0.865	0.795	0.0
255555439	477	conserved hypothetical protein [Ricinus	0.967	0.821	0.775	1e-178
224105563	374	predicted protein [Populus trichocarpa]	0.923	1.0	0.792	1e-174
449438398	473	PREDICTED: uncharacterized protein LOC10	0.992	0.849	0.736	1e-170
357475343	451	Protein thiJ [Medicago truncatula] gi|35	0.950	0.853	0.735	1e-164
388500380	453	unknown [Lotus japonicus]	0.953	0.852	0.718	1e-163
356521514	446	PREDICTED: uncharacterized protein LOC10	0.945	0.858	0.697	1e-156
297798508	472	DJ-1 family protein [Arabidopsis lyrata	0.970	0.832	0.670	1e-155
22329146	472	class I glutamine amidotransferase domai	0.953	0.817	0.679	1e-153
218197114	412	hypothetical protein OsI_20655 [Oryza sa	0.953	0.936	0.647	1e-146

>gi|225428824|ref|XP_002282255.1| PREDICTED: uncharacterized protein LOC100258951 [Vitis vinifera] gi|297741268|emb|CBI32399.3| unnamed protein product [Vitis vinifera]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/387 (79%), Positives = 349/387 (90%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 78
            VLVP+G+GTEEMEAVI+VDVLRRAGA V +ASVEPQLE+EASSGTRLVADTSIS CS +
Sbjct: 61  KVLVPIGYGTEEMEAVILVDVLRRAGANVVVASVEPQLEIEASSGTRLVADTSISTCSDE 120

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
           +FDLIALPGGMPGS RLRD EIL+KITSK AEEKRLYGAICAAPA+TL PWGLLRRKQ+T
Sbjct: 121 IFDLIALPGGMPGSARLRDSEILRKITSKHAEEKRLYGAICAAPAITLQPWGLLRRKQMT 180

Query: 139 CHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLM 198
           CHPAF DKLPTF AVKSN+ VSGE+TTSRGPGT+FEFAL LV+QLFGESVAKE+GELLLM
Sbjct: 181 CHPAFMDKLPTFRAVKSNLQVSGELTTSRGPGTAFEFALALVDQLFGESVAKEVGELLLM 240

Query: 199 HNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS 258
             A+++ KKEEFNEVEW  D  P VL+P+ANGSEEIE+VT+VDILRRAKVDVVVASVE+S
Sbjct: 241 RTAEDNHKKEEFNEVEWSVDHSPHVLVPVANGSEEIEVVTVVDILRRAKVDVVVASVEKS 300

Query: 259 TQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIY 318
            QI+AS+G+K+IADKSI +AAES+YDLIILPGG+AGAERL KS++LKK+LKEQ  AGRIY
Sbjct: 301 LQILASRGIKLIADKSIDNAAESIYDLIILPGGIAGAERLHKSKVLKKMLKEQGSAGRIY 360

Query: 319 GAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFA 378
           GA+CSSP VLH+ GLLK K+ATAHPSV  KLTNEVV G +VV+DGK+ITSRGLA  I+FA
Sbjct: 361 GAICSSPTVLHRQGLLKGKRATAHPSVASKLTNEVVEGARVVIDGKLITSRGLATAIEFA 420

Query: 379 LAIVSKFFGHARTRSVAEGLVFEYPRS 405
           LAIVSK F HAR RSVAEGLVFEYP+S
Sbjct: 421 LAIVSKLFSHARARSVAEGLVFEYPKS 447

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555439|ref|XP_002518756.1| conserved hypothetical protein [Ricinus communis] gi|223542137|gb|EEF43681.1| conserved hypothetical protein [Ricinus communis]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 304/392 (77%), Positives = 344/392 (87%)

Query: 14  PSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSIS 73
           P  +  VLVP+GFGTEEMEAVIIV+VLRRAGAQV +ASVEPQLE+EA+ GTRLVADTSIS
Sbjct: 86  PVTSKKVLVPIGFGTEEMEAVIIVNVLRRAGAQVIVASVEPQLEIEAAGGTRLVADTSIS 145

Query: 74  NCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLR 133
            CS++VFDL+ALPGGMPGS RLRDC+IL++ITSKQAEEKRLYGAIC+APAVTLLPWGLL+
Sbjct: 146 TCSNEVFDLVALPGGMPGSARLRDCKILQQITSKQAEEKRLYGAICSAPAVTLLPWGLLK 205

Query: 134 RKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 193
           RKQ TCHPAF DKLPTFWAVKSNI VSGE+TTSRGPGT F+FAL L EQLFGES+AKE+G
Sbjct: 206 RKQTTCHPAFMDKLPTFWAVKSNIQVSGELTTSRGPGTCFQFALSLSEQLFGESIAKEVG 265

Query: 194 ELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVA 253
           E LLMH AD+  +K+EFNEVEW FD  P VLIP+ANG + IE+VTIVDILRRAKVDVVVA
Sbjct: 266 EFLLMHTADDMRRKDEFNEVEWSFDHKPHVLIPVANGCDVIEVVTIVDILRRAKVDVVVA 325

Query: 254 SVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKV 313
           SVE+S +I++S G KIIADK I DAA+S+YDLIILPG  AGA+RLQKSRILKKLLKEQ  
Sbjct: 326 SVEKSVKILSSLGTKIIADKLIGDAAKSIYDLIILPGETAGAKRLQKSRILKKLLKEQDA 385

Query: 314 AGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLAN 373
           AGRIYGAVCSS  VL   GLLK KKATAHPS   +LTNEVV+G KVV+DGK+ITS+GLA 
Sbjct: 386 AGRIYGAVCSSISVLQSQGLLKDKKATAHPSFSSQLTNEVVDGAKVVIDGKLITSKGLAT 445

Query: 374 VIDFALAIVSKFFGHARTRSVAEGLVFEYPRS 405
           V DFA+AIVSK FG AR RSVAEGLVF+YP++
Sbjct: 446 VTDFAMAIVSKLFGEARARSVAEGLVFDYPKT 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105563|ref|XP_002313856.1| predicted protein [Populus trichocarpa] gi|222850264|gb|EEE87811.1| predicted protein [Populus trichocarpa]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 297/375 (79%), Positives = 337/375 (89%), Gaps = 1/375 (0%)

Query: 31  MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 90
           MEAVIIVDVLRRAGA+V +ASVEPQLEVEA+ GTRLVADTSIS C+++VFDL+ALPGGMP
Sbjct: 1   MEAVIIVDVLRRAGAEVIVASVEPQLEVEAAGGTRLVADTSISKCANEVFDLVALPGGMP 60

Query: 91  GSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTF 150
           GS RLRDCE+L++ITSKQAE+KRLYGAICAAPA+TLLPWGLLRRKQ+T HPAF DKLPTF
Sbjct: 61  GSARLRDCEVLRQITSKQAEDKRLYGAICAAPAITLLPWGLLRRKQMTGHPAFMDKLPTF 120

Query: 151 WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEF 210
           WAV S I VSGE+TTSRGPGTSFEFAL LV+QLFGESVAKE+G+LLLM   D++ +KEE+
Sbjct: 121 WAVASKIQVSGELTTSRGPGTSFEFALSLVDQLFGESVAKEVGQLLLMQADDDTQRKEEY 180

Query: 211 NEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKII 270
           N+VEW FD  PRVL+PIANGSEEIEIV IVDILRRAKVDVVVAS+E+S QI+AS+G+KI+
Sbjct: 181 NKVEWSFDHNPRVLLPIANGSEEIEIVAIVDILRRAKVDVVVASIEKSVQILASRGIKIV 240

Query: 271 ADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330
           ADK I DAAESVYDLIILPGG AGAERL KS++LKKLL+EQ  AGRIYGAVCSSP VLH+
Sbjct: 241 ADKLIGDAAESVYDLIILPGGNAGAERLHKSKVLKKLLQEQYTAGRIYGAVCSSPAVLHR 300

Query: 331 HGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHAR 390
            GLLK K+ATAHPSV+  L N V NG KVV+DGK+ITS+GL+ V DFALAIVSK FGHAR
Sbjct: 301 QGLLKDKRATAHPSVVTNLNN-VSNGAKVVIDGKLITSKGLSTVTDFALAIVSKLFGHAR 359

Query: 391 TRSVAEGLVFEYPRS 405
           TR VAEGLVF+YPRS
Sbjct: 360 TRCVAEGLVFDYPRS 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438398|ref|XP_004136975.1| PREDICTED: uncharacterized protein LOC101204195 [Cucumis sativus] gi|449495608|ref|XP_004159893.1| PREDICTED: uncharacterized protein LOC101229677 [Cucumis sativus]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 299/406 (73%), Positives = 345/406 (84%), Gaps = 4/406 (0%)

Query: 1   MESVSVTV-SSFISPSFALN-VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEV 58
           M S SV++ +S I PS     VLVP+GFGTEEMEAVII+DVLRRAGA VT+ASVE +LE+
Sbjct: 68  MLSTSVSMATSTIPPSMPRKKVLVPIGFGTEEMEAVIIIDVLRRAGAAVTVASVESELEI 127

Query: 59  EASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAI 118
           EAS+G +LVADT IS+CS++VFDL+ALPGGMPGSVRLRDCEIL+KITS+QAEEKRLYGAI
Sbjct: 128 EASAGVKLVADTLISSCSNEVFDLVALPGGMPGSVRLRDCEILRKITSRQAEEKRLYGAI 187

Query: 119 CAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALC 178
           CAAPAVTLLPWGLLRRKQ TCHPAFTDKLPTFWAV+S+I VSGE+TTSRGPGT+F FAL 
Sbjct: 188 CAAPAVTLLPWGLLRRKQTTCHPAFTDKLPTFWAVQSSIQVSGELTTSRGPGTTFGFALA 247

Query: 179 LVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVT 238
           LVEQL+GESVAK++GELLLM +  +  +KEEFN+V+W  D  PRVLIPIANGS+ IE+VT
Sbjct: 248 LVEQLYGESVAKDVGELLLMDSESDCPRKEEFNKVDWSVDHTPRVLIPIANGSQGIELVT 307

Query: 239 IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 298
           I DILRRAKVDVV+ASVE+S QI+ S G K++ADK I +A ES YDLIILPGG A  ERL
Sbjct: 308 IADILRRAKVDVVIASVEKSLQILTSTGTKVVADKLIKEAVESTYDLIILPGGAAADERL 367

Query: 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTK 358
            KSRILKK+LKEQ  A RIYGAVCSSP VL K GLLK K+A AHPS+  + T   V+  K
Sbjct: 368 NKSRILKKMLKEQDNAQRIYGAVCSSPAVLFKQGLLKDKRAVAHPSLETESTK--VDTAK 425

Query: 359 VVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 404
           V++DGK+ITS+G  NVIDFALA+VSK FGHAR RSVAEGLVFEYPR
Sbjct: 426 VIIDGKLITSKGFYNVIDFALAVVSKLFGHARARSVAEGLVFEYPR 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475343|ref|XP_003607957.1| Protein thiJ [Medicago truncatula] gi|355509012|gb|AES90154.1| Protein thiJ [Medicago truncatula]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 284/386 (73%), Positives = 326/386 (84%), Gaps = 1/386 (0%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           VL+P+GFGTEEMEAVI++ VLRRAGA VT+ASVEPQL+VEA+SGT+LVAD SIS CS Q+
Sbjct: 65  VLLPIGFGTEEMEAVILIHVLRRAGAHVTVASVEPQLQVEAASGTKLVADASISECSDQI 124

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           FDLIALPGGMPGS RLRDC+ L+ IT KQAEE RL+GAI AAPAVTLLPWGLL+RK+ITC
Sbjct: 125 FDLIALPGGMPGSARLRDCDALRIITCKQAEENRLFGAINAAPAVTLLPWGLLKRKKITC 184

Query: 140 HPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH 199
           HPAF  KLPTFWAVKSNI VS  +TTSRGPGT++ FAL LVEQLFGES+A+E+ E LLM 
Sbjct: 185 HPAFFHKLPTFWAVKSNIQVSNGLTTSRGPGTAYMFALTLVEQLFGESIAREVAEFLLMR 244

Query: 200 NADNSLKKEEFNEVEWFFDRM-PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS 258
             D+++ K+EFNE++W      P VLIPIA+GSEEIE+VT++DILRRAK +VVVASVE++
Sbjct: 245 TDDDNVSKKEFNEIDWSVGHHPPSVLIPIAHGSEEIEVVTLIDILRRAKANVVVASVEKT 304

Query: 259 TQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIY 318
             ++ASQG KI+ADK ISD  ES +DLIILPGG AGAERL KSRILKKLLKEQ  AGRIY
Sbjct: 305 LGVMASQGTKIVADKLISDIQESAHDLIILPGGTAGAERLSKSRILKKLLKEQNSAGRIY 364

Query: 319 GAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFA 378
           GAVCSSP +LHK GLLK KKATAHPS + KL +  VN   VV+DGKVITS GLA V DFA
Sbjct: 365 GAVCSSPAILHKQGLLKDKKATAHPSALNKLKDGAVNDAVVVIDGKVITSEGLATVTDFA 424

Query: 379 LAIVSKFFGHARTRSVAEGLVFEYPR 404
           LAIVSK FG+ R RSVAEGLVFEYPR
Sbjct: 425 LAIVSKLFGNGRARSVAEGLVFEYPR 450

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500380|gb|AFK38256.1| unknown [Lotus japonicus]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/387 (71%), Positives = 327/387 (84%), Gaps = 1/387 (0%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 78
            VL+P+GFGTEEMEA I++ VLR AGA VT+ASVEPQL++EA+ GT+LVADTSIS CS Q
Sbjct: 63  KVLLPIGFGTEEMEAAILIHVLRHAGAHVTVASVEPQLQIEAAGGTKLVADTSISECSDQ 122

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
           +FDLIALPGGMPGS RLRDC++L+KIT KQAEE+RLYGAICAAPAVTLLPWGLL+RK+ T
Sbjct: 123 IFDLIALPGGMPGSARLRDCDVLRKITCKQAEERRLYGAICAAPAVTLLPWGLLKRKKTT 182

Query: 139 CHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLM 198
           CHPAF   LPTFWAVKSNI VSGE+TTSRGP T+++FAL LV+QLFG+SVAKE+ E LLM
Sbjct: 183 CHPAFFGDLPTFWAVKSNIQVSGELTTSRGPATTYQFALSLVQQLFGDSVAKELAESLLM 242

Query: 199 HNADNSLKKEEFNEVEWFF-DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER 257
             AD++  K+EFNEVEW   +  P++LIPIA+GSEEIE VT++DILRRAK +V VASVE+
Sbjct: 243 RTADDNRVKKEFNEVEWTVGNHPPKILIPIAHGSEEIEAVTLIDILRRAKANVKVASVEK 302

Query: 258 STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 317
           + +I ASQG KI+AD  ISDA ES +D+IILPGG+AGA++L KSRILKKLLKEQ  AGRI
Sbjct: 303 TLEISASQGTKIVADVLISDAQESAHDMIILPGGIAGAQKLSKSRILKKLLKEQSSAGRI 362

Query: 318 YGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDF 377
           YGAVCSSP +LHK GLLK KKATAHPSV+ KL  E +    VV+DGK+ITS GLA V  F
Sbjct: 363 YGAVCSSPAILHKQGLLKDKKATAHPSVLDKLKEEAIKDADVVIDGKLITSEGLATVTAF 422

Query: 378 ALAIVSKFFGHARTRSVAEGLVFEYPR 404
           +LAIVSK FG  R RSVAEGLVFE+PR
Sbjct: 423 SLAIVSKLFGAGRARSVAEGLVFEFPR 449

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521514|ref|XP_003529400.1| PREDICTED: uncharacterized protein LOC100777134 [Glycine max]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/387 (69%), Positives = 323/387 (83%), Gaps = 4/387 (1%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 78
            VLVP+G GTEEMEAVI++ VLRRAGA VT+ASVEPQL+VEA+ GT+LVADT IS CS Q
Sbjct: 62  KVLVPIGLGTEEMEAVIMIHVLRRAGADVTVASVEPQLQVEAAGGTKLVADTDISACSDQ 121

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
           VFDL+ALPGGMPGS RLRDC++L+KIT +QAEE RLYGAICAAPAVTLLPWGLL++K+IT
Sbjct: 122 VFDLVALPGGMPGSARLRDCDVLRKITCRQAEENRLYGAICAAPAVTLLPWGLLKKKKIT 181

Query: 139 CHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLM 198
           CHPAF D+LP FWAVKSN+ VS  +TTSRGPGT+++FAL L EQLFG+SVA E+ E ++ 
Sbjct: 182 CHPAFYDRLPRFWAVKSNLQVSRGLTTSRGPGTTYQFALSLAEQLFGDSVANEVAESMVN 241

Query: 199 HNADNSLKKEEFNEVEWFF-DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER 257
           ++ D++ K  EFN+VEW      P VL+P+A+GSEEIE+VT+VDILRRAK  V+VASVE+
Sbjct: 242 YD-DHAAK--EFNKVEWSVGHHTPSVLVPVAHGSEEIEVVTVVDILRRAKAKVIVASVEK 298

Query: 258 STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 317
           S +++ASQG KI+AD  I DA ES +DLIILPGG AGA+RL KSRILKKLLKEQ  A RI
Sbjct: 299 SLEVLASQGTKIVADILIGDAQESAHDLIILPGGTAGAQRLSKSRILKKLLKEQNSAERI 358

Query: 318 YGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDF 377
           YGAVCSS  +L K GLLK K+ATAH S + KL ++ +NG KVV+DGK+ITS GLA V DF
Sbjct: 359 YGAVCSSLAILQKQGLLKDKRATAHASTLDKLKDKEINGAKVVIDGKLITSEGLATVTDF 418

Query: 378 ALAIVSKFFGHARTRSVAEGLVFEYPR 404
           ALAIVSK FG+ R RSVAEGLVFEYP+
Sbjct: 419 ALAIVSKLFGNGRARSVAEGLVFEYPK 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798508|ref|XP_002867138.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297312974|gb|EFH43397.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/394 (67%), Positives = 320/394 (81%), Gaps = 1/394 (0%)

Query: 12  ISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTS 71
           +S +    VLVP+G+GTEE+EAV++VDVLRRAGA+VT+ASVE +L++EASSGTRLVAD  
Sbjct: 78  VSSATTRKVLVPIGYGTEEIEAVVLVDVLRRAGAEVTVASVEQKLDIEASSGTRLVADVL 137

Query: 72  ISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 131
           IS C+ QV+DL+ALPGGMPG+VRLRDC+IL+KI  +QAE+KRLYGAI  APA+TLLPWGL
Sbjct: 138 ISKCADQVYDLVALPGGMPGAVRLRDCKILEKIMKRQAEDKRLYGAISMAPAITLLPWGL 197

Query: 132 LRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKE 191
           L RK+ T HPAF  KLPTFWAVK+NI +SGE+TTSRGPGTSF+FAL L EQLFGE+ AK 
Sbjct: 198 LTRKRTTGHPAFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKS 257

Query: 192 IGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVV 251
           + E LL+ +   + K +EF+ ++W  D  PRVLI +ANGSEE+E+VTI D+LRRAKVDV 
Sbjct: 258 VEEFLLLRDGYQNPKNKEFSSIDWSLDHTPRVLISVANGSEEVEVVTIADVLRRAKVDVT 317

Query: 252 VASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ 311
           VASVERS +I ASQG KII DK I +AAES YDLI+LPGG  G+ERLQKS+ILKKLL+EQ
Sbjct: 318 VASVERSLRITASQGTKIITDKLIGEAAESSYDLIVLPGGHTGSERLQKSKILKKLLREQ 377

Query: 312 KVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPS-VIGKLTNEVVNGTKVVVDGKVITSRG 370
             +GRIYGA  SS  VLHKHGLLK K+ T +PS   G +  +++ G +VV+DG VITS G
Sbjct: 378 HKSGRIYGAANSSSTVLHKHGLLKEKRTTVYPSETDGPMNQQMIEGAEVVIDGNVITSLG 437

Query: 371 LANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 404
           LA V  F+LAIVSK FGHAR RSV+EGLV EYPR
Sbjct: 438 LATVTKFSLAIVSKLFGHARARSVSEGLVHEYPR 471

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329146|ref|NP_195128.2| class I glutamine amidotransferase domain-containing protein [Arabidopsis thaliana] gi|18377684|gb|AAL66992.1| unknown protein [Arabidopsis thaliana] gi|20465753|gb|AAM20345.1| unknown protein [Arabidopsis thaliana] gi|332660910|gb|AEE86310.1| class I glutamine amidotransferase domain-containing protein [Arabidopsis thaliana]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/387 (67%), Positives = 314/387 (81%), Gaps = 1/387 (0%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 78
            VLVP+G+GTEE+EAV++VDVLRRAGA VT+ASVE +LEVE SSGTRL+AD  IS C+ Q
Sbjct: 85  KVLVPIGYGTEEIEAVVLVDVLRRAGADVTVASVEQKLEVEGSSGTRLLADVLISKCADQ 144

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
           V+DL+ALPGGMPG+VRLRDCEIL+KI  +QAE+KRLYGAI  APA+TLLPWGLL RK+ T
Sbjct: 145 VYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTT 204

Query: 139 CHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLM 198
            HPAF  KLPTFWAVK+NI +SGE+TTSRGPGTSF+FAL L EQLFGE+ AK I E LL+
Sbjct: 205 GHPAFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLL 264

Query: 199 HNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS 258
            +   + K +EFN ++W  D  PRVLIP+ANGSE +E+V+I D+LRRAKVDV V+SVERS
Sbjct: 265 RDGYQNPKNKEFNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRRAKVDVTVSSVERS 324

Query: 259 TQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIY 318
            +I A QG KII DK I +AAES YDLIILPGG  G+ERLQKS+ILKKLL+EQ  +GRIY
Sbjct: 325 LRITAFQGTKIITDKLIGEAAESSYDLIILPGGHTGSERLQKSKILKKLLREQHESGRIY 384

Query: 319 GAVCSSPIVLHKHGLLKAKKATAHPSVIGK-LTNEVVNGTKVVVDGKVITSRGLANVIDF 377
           GA  SS  VLHKHGLLK K+ T +PS   + +  +++ G +VV+DG VITS GLA V  F
Sbjct: 385 GATNSSSTVLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVVIDGNVITSLGLATVTKF 444

Query: 378 ALAIVSKFFGHARTRSVAEGLVFEYPR 404
           +LAIVSK FGHAR RSV+EGLV EYPR
Sbjct: 445 SLAIVSKLFGHARARSVSEGLVHEYPR 471

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197114|gb|EEC79541.1| hypothetical protein OsI_20655 [Oryza sativa Indica Group]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/386 (64%), Positives = 307/386 (79%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           VL+P+  GTEEMEAVI+  VLRRAGA VT+ASVE  LEVEAS G+ +VAD  I+ C+ QV
Sbjct: 27  VLLPIAMGTEEMEAVILAGVLRRAGADVTLASVEDGLEVEASRGSHIVADKRIAACADQV 86

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           FDL+ALPGGMPGSVRLRD  IL++IT +QAEEKRLYGAICAAPAV L+PWGL +RK+ITC
Sbjct: 87  FDLVALPGGMPGSVRLRDSAILQRITVRQAEEKRLYGAICAAPAVVLMPWGLHKRKKITC 146

Query: 140 HPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH 199
           HP+F + LPTF  V+SN+ VSGE+TTSRGPGT+F+FAL  VEQLFG   A+++   LL  
Sbjct: 147 HPSFIEDLPTFRTVESNVQVSGELTTSRGPGTAFQFALSFVEQLFGPCKAEDMDNTLLTK 206

Query: 200 NADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST 259
             DN  +  E NE+EW  D  P VLIPIANGSEE+EI+ + D+LRRA V+VV+ASVE+ST
Sbjct: 207 VDDNLERSIEVNEIEWTSDHNPHVLIPIANGSEEMEIIMLTDVLRRANVNVVLASVEKST 266

Query: 260 QIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYG 319
            IV SQ ++I+ADK ISDA+   YDLIILPGG AGAERL KS +LKKLLKEQK  GR+YG
Sbjct: 267 SIVGSQRMRIVADKCISDASALEYDLIILPGGPAGAERLHKSSVLKKLLKEQKQTGRMYG 326

Query: 320 AVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFAL 379
            +CSSP++L K GLL+ K  TAHPS++ +LT EV++ +KVV+DG +IT  GL  VIDF+L
Sbjct: 327 GICSSPVILQKQGLLQDKTVTAHPSIVNQLTCEVIDRSKVVIDGNLITGMGLGTVIDFSL 386

Query: 380 AIVSKFFGHARTRSVAEGLVFEYPRS 405
           AI+ KFFGH R + VA G+VFEYP+S
Sbjct: 387 AIIKKFFGHGRAKGVANGMVFEYPKS 412

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2124246	472	DJ1C "DJ-1 homolog C" [Arabido	0.950	0.815	0.658	1.2e-129
TAIR|locus:2009650	438	DJ1B "AT1G53280" [Arabidopsis	0.950	0.878	0.452	2.6e-86
TAIR|locus:2086295	392	DJ1A "AT3G14990" [Arabidopsis	0.928	0.959	0.434	1.8e-80
UNIPROTKB|Q9KPQ8	205	VC_2308 "4-methyl-5(B-hydroxye	0.444	0.878	0.384	2.3e-30
TIGR_CMR|VC_2308	205	VC_2308 "4-methyl-5(B-hydroxye	0.444	0.878	0.384	2.3e-30
GENEDB_PFALCIPARUM|PFF1335c	189	PFF1335c "4-methyl-5(B-hydroxy	0.441	0.947	0.381	1.2e-26
ZFIN|ZDB-GENE-041010-5	189	park7 "parkinson disease (auto	0.437	0.936	0.384	1.5e-26
UNIPROTKB|Q7TQ35	189	PARK7 "Protein DJ-1" [Mesocric	0.437	0.936	0.379	6.6e-26
UNIPROTKB|D5M8S2	189	DJ-1 "Protein DJ-1" [Gallus ga	0.437	0.936	0.379	1.4e-25
MGI|MGI:2135637	189	Park7 "Parkinson disease (auto	0.437	0.936	0.384	1.8e-25

TAIR|locus:2124246 DJ1C "DJ-1 homolog C" [Arabidopsis thaliana (taxid:3702)]

 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 254/386 (65%), Positives = 302/386 (78%)

Query:    20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
             VLVP+G+GTEE+EAV++VDVLRRAGA VT+ASVE +LEVE SSGTRL+AD  IS C+ QV
Sbjct:    86 VLVPIGYGTEEIEAVVLVDVLRRAGADVTVASVEQKLEVEGSSGTRLLADVLISKCADQV 145

Query:    80 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
             +DL+ALPGGMPG+VRLRDCEIL+KI  +QAE+KRLYGAI  APA+TLLPWGLL RK+ T 
Sbjct:   146 YDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTTG 205

Query:   140 HPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH 199
             HPAF  KLPTFWAVK+NI +SGE+TTSRGPGTSF+FAL L EQLFGE+ AK I E LL+ 
Sbjct:   206 HPAFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLLR 265

Query:   200 NADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST 259
             +   + K +EFN ++W  D  PRVLIP+ANGSE +E+V+I D+LRRAKVDV V+SVERS 
Sbjct:   266 DGYQNPKNKEFNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRRAKVDVTVSSVERSL 325

Query:   260 QIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYG 319
             +I A QG KII DK I +AAES YDLIILPGG  G+ERLQKS+ILKKLL+EQ  +GRIYG
Sbjct:   326 RITAFQGTKIITDKLIGEAAESSYDLIILPGGHTGSERLQKSKILKKLLREQHESGRIYG 385

Query:   320 AVCSSPIVXXXXXXXXXXXXXXXPSVIGKLTNE-VVNGTKVVVDGKVITSRGLANVIDFA 378
             A  SS  V               PS   +  N+ ++ G +VV+DG VITS GLA V  F+
Sbjct:   386 ATNSSSTVLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVVIDGNVITSLGLATVTKFS 445

Query:   379 LAIVSKFFGHARTRSVAEGLVFEYPR 404
             LAIVSK FGHAR RSV+EGLV EYPR
Sbjct:   446 LAIVSKLFGHARARSVSEGLVHEYPR 471

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2009650 DJ1B "AT1G53280" [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 176/389 (45%), Positives = 258/389 (66%)

Query:     5 SVTVSSFISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT 64
             S ++S+ +S S    VL+PV  GTE  EAV+++DVLRR GA VT+ASVE Q+ V+A  G 
Sbjct:    41 SFSISATMSSS-TKKVLIPVAHGTEPFEAVVMIDVLRRGGADVTVASVENQVGVDACHGI 99

Query:    65 RLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV 124
             ++VADT +S+ +  VFDLI LPGG+PG   L++C+ L+K+  KQ  + RL  AIC APA+
Sbjct:   100 KMVADTLLSDITDSVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPAL 159

Query:   125 TLLPWGLLRRKQITCHPAFTDKLPTF-WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
                 WGLL  K+ TC+P F +KL     AV+S + + G++ TSRGPGT+ EF++ LVEQL
Sbjct:   160 AFGTWGLLEGKKATCYPVFMEKLAACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQL 219

Query:   184 FGESVAKEI-GELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDI 242
              G+  A E+ G L++  N  +     E N+V W F+  P++L+PIA+GSEE+E V I+D+
Sbjct:   220 LGKEKAVEVSGPLVMRPNPGDEYTITELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDV 279

Query:   243 LRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 302
             L+RAK +VVVA++  S ++VAS+ VK++AD  + +A ++ YDLI+LPGG+ GAE    S 
Sbjct:   280 LKRAKANVVVAALGNSLEVVASRKVKLVADVLLDEAEKNSYDLIVLPGGLGGAEAFASSE 339

Query:   303 ILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXXXXPSVIGKLTNEVVNGTKVVV 361
              L  +LK+Q  + + YGA+C+SP +V               P++  KLT++     +V+V
Sbjct:   340 KLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCSKLTDQSHIEHRVLV 399

Query:   362 DGKVITSRGLANVIDFALAIVSKFFGHAR 390
             DG +ITSRG    ++FALAIV KF+G  +
Sbjct:   400 DGNLITSRGPGTSLEFALAIVEKFYGREK 428

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2086295 DJ1A "AT3G14990" [Arabidopsis thaliana (taxid:3702)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 165/380 (43%), Positives = 238/380 (62%)

Query:    15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISN 74
             SF   VL+P+  GTE +EAV ++ VLRR GA VT+ASVE Q+ V+A  G ++VADT +S+
Sbjct:     3 SFTKTVLIPIAHGTEPLEAVAMITVLRRGGADVTVASVETQVGVDACHGIKMVADTLLSD 62

Query:    75 CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 134
              +  VFDLI LPGG+PG   L++C+ L+ +  KQ  + RL  AIC APA+ L  WGLL  
Sbjct:    63 ITDSVFDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEG 122

Query:   135 KQITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 192
             K+ T +P F +KL    A  V+S + + G + TSRGPGT+ EF++ L+EQLFG+  A E+
Sbjct:   123 KKATGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEV 182

Query:   193 GELLLMH-NADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVV 251
               +LL+  N        E N+  W F+  P++L+PIA  SEEIE + +VDILRRAK +VV
Sbjct:   183 SSILLLRPNPGEEFTFTELNQTNWSFEDTPQILVPIAEESEEIEAIALVDILRRAKANVV 242

Query:   252 VASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ 311
             +A+V  S ++  S+  K++A+  + + AE  +DLI+LPGG+ GA+R      L  +L++Q
Sbjct:   243 IAAVGNSLEVEGSRKAKLVAEVLLDEVAEKSFDLIVLPGGLNGAQRFASCEKLVNMLRKQ 302

Query:   312 KVAGRIYGAVCSSPI-VXXXXXXXXXXXXXXXPSVIGKLTNEVVNGTKVVVDGKVITSRG 370
               A + YG +C+SP  V               P V  KL+++     +VVVDG VITSR 
Sbjct:   303 AEANKPYGGICASPAYVFEPNGLLKGKKATTHPVVSDKLSDKSHIEHRVVVDGNVITSRA 362

Query:   371 LANVIDFALAIVSKFFGHAR 390
                 ++F+LAIV KF+G  +
Sbjct:   363 PGTAMEFSLAIVEKFYGREK 382

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|Q9KPQ8 VC_2308 "4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 70/182 (38%), Positives = 108/182 (59%)

Query:    20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
             +LVPV  G+EEME VIIVD L RAG QVTMA+V  +L+V+ S G  L A+ ++  CS + 
Sbjct:     9 ILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEA 68

Query:    80 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
             FD +ALPGG+ G+    D   L  +    +++ +L  AICA PA+           ++TC
Sbjct:    69 FDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTC 128

Query:   140 HPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLL 197
             HP F D +P+    +  +  + +  + TS+GPGT+ EFAL ++  L G  +A+ +   ++
Sbjct:   129 HPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMV 188

Query:   198 MH 199
             +H
Sbjct:   189 LH 190

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

TIGR_CMR|VC_2308 VC_2308 "4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 70/182 (38%), Positives = 108/182 (59%)

Query:    20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
             +LVPV  G+EEME VIIVD L RAG QVTMA+V  +L+V+ S G  L A+ ++  CS + 
Sbjct:     9 ILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEA 68

Query:    80 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
             FD +ALPGG+ G+    D   L  +    +++ +L  AICA PA+           ++TC
Sbjct:    69 FDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTC 128

Query:   140 HPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLL 197
             HP F D +P+    +  +  + +  + TS+GPGT+ EFAL ++  L G  +A+ +   ++
Sbjct:   129 HPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMV 188

Query:   198 MH 199
             +H
Sbjct:   189 LH 190

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

GENEDB_PFALCIPARUM|PFF1335c PFF1335c "4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme" [Plasmodium falciparum (taxid:5833)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 69/181 (38%), Positives = 98/181 (54%)

Query:    21 LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVF 80
             LV V  G+E++E + +VDVLRRAG  VT ASVE   +V   S   ++ADT+IS   + ++
Sbjct:     8 LVAVASGSEDVEYITVVDVLRRAGVHVTTASVEKSEQVCLQSKNVVLADTTISKVRNNIY 67

Query:    81 DLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCH 140
             D++ +PGGM GS  + +C     +  +Q    RLY AICAAP   L    L+   +   +
Sbjct:    68 DVLVIPGGMKGSNTISECSEFIDMLKEQKANNRLYAAICAAPETVLDRHSLIDDVEAVAY 127

Query:   141 PAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN 200
             P+F          K  + VS    TS GPG++ EF L +VE L G  VA  +    L+H 
Sbjct:   128 PSFERNFKHIG--KGRVCVSKNCITSVGPGSAVEFGLKIVEHLLGRQVALSLASGFLLHP 185

Query:   201 A 201
             A
Sbjct:   186 A 186

GO:0009228 "thiamine biosynthetic process" evidence=ISS

ZFIN|ZDB-GENE-041010-5 park7 "parkinson disease (autosomal recessive, early onset) 7" [Danio rerio (taxid:7955)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 70/182 (38%), Positives = 102/182 (56%)

Query:    21 LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
             LV +  G EEME VI VDV+RRAG  VT+A +  +  V+ S    +  D+S+ +   Q  
Sbjct:     7 LVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGP 66

Query:    80 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
             +D++ LPGG+ G+  L +   +K++   Q   K L  AICA P   LL  G+     +T 
Sbjct:    67 YDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTA-LLAHGIAYGSTVTT 125

Query:   140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
             HP   DK+     +   ++ +   G V TSRGPGTSFEFAL +VE+L G  VA ++   L
Sbjct:   126 HPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPL 185

Query:   197 LM 198
             ++
Sbjct:   186 IL 187

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

UNIPROTKB|Q7TQ35 PARK7 "Protein DJ-1" [Mesocricetus auratus (taxid:10036)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 69/182 (37%), Positives = 103/182 (56%)

Query:    21 LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
             LV +  G EEME VI VD++RRAG +VT+A +  +  V+ S    +  DTS+ +   Q  
Sbjct:     7 LVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKKQGP 66

Query:    80 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
             +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct:    67 YDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPTA-LLAHEIGFGSKVTT 125

Query:   140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
             HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+  A ++   L
Sbjct:   126 HPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVKAPL 185

Query:   197 LM 198
             ++
Sbjct:   186 VL 187

GO:0003729 "mRNA binding" evidence=ISS

GO:0004601 "peroxidase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0032091 "negative regulation of protein binding" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050727 "regulation of inflammatory response" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

UNIPROTKB|D5M8S2 DJ-1 "Protein DJ-1" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 69/182 (37%), Positives = 100/182 (54%)

Query:    21 LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
             LV +  G EEME VI  DV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct:     7 LVILAKGAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDARKEGP 66

Query:    80 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
             +D+I LPGG  G+  L +   +K I   Q   K L  AICA P   LL  G+    ++T 
Sbjct:    67 YDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPTA-LLAHGIGFGSKVTT 125

Query:   140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
             HP   DK+     +   +S +   G + TSRGPGTSFEF L +VE L G+ VA+++   L
Sbjct:   126 HPLAKDKMMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVKAPL 185

Query:   197 LM 198
             ++
Sbjct:   186 IL 187

GO:0003729 "mRNA binding" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

MGI|MGI:2135637 Park7 "Parkinson disease (autosomal recessive, early onset) 7" [Mus musculus (taxid:10090)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 70/182 (38%), Positives = 104/182 (57%)

Query:    21 LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
             LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  DTS+ +   Q  
Sbjct:     7 LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGP 66

Query:    80 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
             +D++ LPGG  G+  L +  ++K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct:    67 YDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPTA-LLAHEVGFGCKVTT 125

Query:   140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
             HP   DK+     +   +S +   G + TSRGPGTSFEFAL +VE L G+ +A ++   L
Sbjct:   126 HPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPL 185

Query:   197 LM 198
             ++
Sbjct:   186 VL 187

GO:0001963 "synaptic transmission, dopaminergic" evidence=IMP

GO:0003723 "RNA binding" evidence=TAS

GO:0003729 "mRNA binding" evidence=ISO

GO:0004601 "peroxidase activity" evidence=IMP

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006950 "response to stress" evidence=IMP

GO:0006954 "inflammatory response" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0007338 "single fertilization" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISO

GO:0008283 "cell proliferation" evidence=TAS

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030424 "axon" evidence=ISO

GO:0032091 "negative regulation of protein binding" evidence=ISO

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP;IDA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043523 "regulation of neuron apoptotic process" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0050727 "regulation of inflammatory response" evidence=IMP

GO:0050821 "protein stabilization" evidence=ISO;IMP

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IMP

GO:0051899 "membrane depolarization" evidence=IMP

GO:0051920 "peroxiredoxin activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IMP

GO:0060081 "membrane hyperpolarization" evidence=IMP

GO:0060548 "negative regulation of cell death" evidence=ISO;IMP

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=ISO

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO;IMP

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IMP

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY09	DJ1C_ARATH	No assigned EC number	0.6795	0.9530	0.8177	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	1e-63
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	4e-63
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	5e-55
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	2e-53
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	9e-32
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	6e-31
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	1e-28
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	1e-26
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	3e-26
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	2e-23
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	3e-22
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	5e-22
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	8e-21
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	2e-15
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	2e-15
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	4e-13
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	8e-13
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	1e-11
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	1e-11
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	3e-10
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	5e-09
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	6e-09
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	1e-08
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	2e-08
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	8e-08
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	1e-07
PRK09393	322	PRK09393, ftrA, transcriptional activator FtrA; Pr	4e-07
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	6e-07
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	1e-06
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	2e-06
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	1e-04
cd03132	142	cd03132, GATase1_catalase, Type 1 glutamine amidot	5e-04

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  200 bits (512), Expect = 1e-63
 Identities = 76/163 (46%), Positives = 103/163 (63%)

Query: 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV 282
           VL+ +A+G EEIE VT VD+LRRA ++V  AS+E+   + +S G+K+ ADK++SD     
Sbjct: 1   VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDD 60

Query: 283 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH 342
           YD I++PGG+ GA+ L  +  L KLLKE    G++  A+C++P VL K GLLK KKAT +
Sbjct: 61  YDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCY 120

Query: 343 PSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 385
           P    KL         VVVDG +ITSRG     +FAL IV   
Sbjct: 121 PGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  200 bits (510), Expect = 4e-63
 Identities = 85/176 (48%), Positives = 113/176 (64%), Gaps = 4/176 (2%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ--LEVEASSGTRLVADTSISNCSH 77
           VLVP+  G EEMEAVI VDVLRRAG +VT+A       L V+ S G +++AD S+ +   
Sbjct: 2   VLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIAGLNGKLAVKGSRGVKILADASLEDVDL 61

Query: 78  QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 137
           + FD+I LPGGMPG+  LR+ ++L  I   Q  + +L  AICAAPAV L    LL +K  
Sbjct: 62  EKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVLLGKK-A 120

Query: 138 TCHPAFTDKLP-TFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 192
           TC+P F +KL    ++V   + V G + TSRGPGT+ EFAL LVE L G+  A+E+
Sbjct: 121 TCYPGFKEKLLNGNYSVNKTVVVDGNLITSRGPGTAIEFALELVELLAGKEKAQEV 176

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  178 bits (455), Expect = 5e-55
 Identities = 80/164 (48%), Positives = 107/164 (65%), Gaps = 1/164 (0%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           VLV +  G EE+EAV  VDVLRRAG +VT AS+E +L V +S G ++ AD ++S+ +   
Sbjct: 1   VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDD 60

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D I +PGG+PG+  L D E L K+  +   + +L  AICAAPAV L   GLL+ K+ TC
Sbjct: 61  YDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAV-LAKAGLLKGKKATC 119

Query: 140 HPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
           +P F DKL     V   + V G + TSRGPGT+FEFAL +VE L
Sbjct: 120 YPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  175 bits (445), Expect = 2e-53
 Identities = 78/179 (43%), Positives = 109/179 (60%), Gaps = 3/179 (1%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSISDAA 279
           +VL+P+A G EE+E V  VD+LRRA + V VA         +  S+GVKI+AD S+ D  
Sbjct: 1   KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIAGLNGKLAVKGSRGVKILADASLEDVD 60

Query: 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKA 339
              +D+I+LPGG+ GAE L+ S++L  +LK Q+  G++  A+C++P VL  HG+L  KKA
Sbjct: 61  LEKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVLLGKKA 120

Query: 340 TAHPSVIGKLTNE-VVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
           T +P    KL N        VVVDG +ITSRG    I+FAL +V    G  + + VA G
Sbjct: 121 TCYPGFKEKLLNGNYSVNKTVVVDGNLITSRGPGTAIEFALELVELLAGKEKAQEVAAG 179

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score =  119 bits (299), Expect = 9e-32
 Identities = 67/184 (36%), Positives = 104/184 (56%), Gaps = 5/184 (2%)

Query: 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSISDA 278
              L+ +A GSEE E VT +D+L R  + V  ASV  + + +I  S+GVK++AD  + + 
Sbjct: 3   ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEV 62

Query: 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAK 337
           A+  +D+I+LPGG+ GAE  + S +L + +++   +GRI  A+C++P  VL  H L    
Sbjct: 63  ADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIG 122

Query: 338 KATAHPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANVIDFALAIVSKFFGHARTRSVA 395
             T  P++  K+  E     +VV D +V  +TS+G    IDFAL I+    G  +   VA
Sbjct: 123 NMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVA 182

Query: 396 EGLV 399
             LV
Sbjct: 183 SQLV 186

Length = 196

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score =  116 bits (293), Expect = 6e-31
 Identities = 68/190 (35%), Positives = 100/190 (52%), Gaps = 16/190 (8%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASV--EPQLEVEASSGTRLVADTSISNCS 76
           + LV +  G+EE EAV  +D+L R G +VT ASV  +  LE+  S G +L+AD  +   +
Sbjct: 4   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVA 63

Query: 77  HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 136
              FD+I LPGG+ G+   RD  +L +   +     R+  AICAAPA  L+P  L     
Sbjct: 64  DGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGN 123

Query: 137 ITCHPAFTDKLP--------TFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESV 188
           +T  P   DK+P          W  + N+       TS+GPGT+ +FAL +++ L G   
Sbjct: 124 MTGFPTLKDKIPAEQWQDKRVVWDARVNL------LTSQGPGTAIDFALKIIDLLVGREK 177

Query: 189 AKEIGELLLM 198
           A E+   L+M
Sbjct: 178 AHEVASQLVM 187

Length = 196

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  108 bits (273), Expect = 1e-28
 Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 249 DVVVASVERSTQIVASQG-VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKL 307
           +V V S E   ++    G VK+ ADK++ D     YD +++PGG AGAE L+    L K 
Sbjct: 1   EVDVVSPEDGKEVKGKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKF 60

Query: 308 LKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTK--VVVDG-K 364
           +KE   +G+   A+C  P+VL   GLLK ++ T+ PSV   L N         VVVDG K
Sbjct: 61  VKEFYESGKPIAAICHGPVVLAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQPVVVDGNK 120

Query: 365 VITSRGLANVIDFALAIV 382
           ++TS G  +  +FAL ++
Sbjct: 121 LVTSAGPGSAEEFALELL 138

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score =  105 bits (263), Expect = 1e-26
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 15/183 (8%)

Query: 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ-IVASQGVKIIA-DKSISD 277
           M ++ I +A+G E++E++   D+LRRA  +V VAS E   + + + +G  ++A DK+  D
Sbjct: 2   MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDD 61

Query: 278 AAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKA 336
           A  + YD +++PGG  G E L+    L   +++    G+   A+C  P VL   G LLK 
Sbjct: 62  ADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKG 121

Query: 337 KKATAHPSVIGKLTNEVVNG-----------TKVVVDGK-VITSRGLANVIDFALAIVSK 384
           +KATA P +   + N                 +VVVDG  ++T R  A+   FAL ++  
Sbjct: 122 RKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLKA 181

Query: 385 FFG 387
             G
Sbjct: 182 LGG 184

Length = 188

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  102 bits (256), Expect = 3e-26
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 46  QVTMASVEPQLEVEASSGT-RLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKI 104
           +V + S E   EV+  +G  ++ AD ++ + +   +D + +PGG  G+  LRD E L K 
Sbjct: 1   EVDVVSPEDGKEVKGKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKF 60

Query: 105 TSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTD--KLPTFWAVKSNIHVSG- 161
             +  E  +   AIC  P V L   GLL+ +++T  P+  +  K      V   + V G 
Sbjct: 61  VKEFYESGKPIAAICHGPVV-LAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQPVVVDGN 119

Query: 162 EVTTSRGPGTSFEFALCLVEQL 183
           ++ TS GPG++ EFAL L+E L
Sbjct: 120 KLVTSAGPGSAEEFALELLEAL 141

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 95.3 bits (238), Expect = 2e-23
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKII-ADKSISDAAE 280
           +V I  A+G E++E+   +  LR A  +VVVA  E   +I    G   +  D +I+D   
Sbjct: 1   KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDA 60

Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 340
             YD +++PGG    ++L++       ++    AG+   A+C  P VL   G+++ +K T
Sbjct: 61  DDYDALVIPGGTN-PDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLT 119

Query: 341 AHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIV 382
           ++PS+   L N     V+  +VVVDG +ITSR   ++  F  AI+
Sbjct: 120 SYPSIKDDLINAGANWVD-EEVVVDGNLITSRNPDDLPAFNRAIL 163

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score = 93.0 bits (231), Expect = 3e-22
 Identities = 46/187 (24%), Positives = 74/187 (39%), Gaps = 14/187 (7%)

Query: 17  ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--VEASSGTRLVADTSISN 74
              + + +  G E++E ++  DVLRRAG +V +AS E + +       G  +  D +  +
Sbjct: 2   MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDD 61

Query: 75  CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 134
                +D + +PGG  G   LR    L           +   AIC  PAV      LL+ 
Sbjct: 62  ADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKG 121

Query: 135 KQITCHPAFTDKLPTF-----------WAVKSNIHVSGEVT-TSRGPGTSFEFALCLVEQ 182
           ++ T  P   + +                    + V G    T R P ++  FAL L++ 
Sbjct: 122 RKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLKA 181

Query: 183 LFGESVA 189
           L G   A
Sbjct: 182 LGGAEKA 188

Length = 188

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 92.2 bits (230), Expect = 5e-22
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 9/160 (5%)

Query: 246 AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILK 305
           A  +V + S E    + +  G+ ++ D S +D  +   D++++PGG  G   L     L 
Sbjct: 29  APFEVFLVS-ETGGPVSSRSGLTVLPDTSFADPPD--LDVLLVPGG-GGTRALVNDPALL 84

Query: 306 KLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLT---NEVVNGTKVVVD 362
             ++ Q    +   +VC+  ++L   GLL  ++AT H + I  L      VV   + VVD
Sbjct: 85  DFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVD 144

Query: 363 GKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEY 402
           G + TS G++  ID ALA+V++ FG    ++VA  L+ EY
Sbjct: 145 GNIWTSGGVSAGIDMALALVARLFGEELAQAVA--LLIEY 182

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score = 88.2 bits (219), Expect = 8e-21
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV 282
           +L+   +  E+ E++  +D LR A  +V   S E  T  V   G  +  D +I +     
Sbjct: 2   LLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGT-TVGKHGYSVTVDATIDEVNPEE 60

Query: 283 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH 342
           YD +++PGG A  E L+ +    +L++E    G+   A+C  P +L   G+L+ KK T++
Sbjct: 61  YDALVIPGGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSY 119

Query: 343 PSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIV 382
           P++I  + N   E V+   VVVDG ++TSR   ++  F    +
Sbjct: 120 PAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFL 162

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 261 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 320
           + +S G+ I  D  +  A     D++ + GG+ G ER   +  L   L+     G   G 
Sbjct: 57  VRSSSGLSIAPDGGLEAAPP--IDILPVCGGL-GPERPVNAPALLAWLRRAARRGARLGG 113

Query: 321 VCSSPIVLHKHGLLKAKKATAH-----------PSVIGKLTNEVVNGTKVVVDGKVITSR 369
           +C+   VL + GLL  ++AT H           P V  ++T+        V+DG  IT  
Sbjct: 114 LCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDV--RVTDR-----LFVIDGDRITCA 166

Query: 370 GLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS 405
           G    ID  LA++ + FG A    VA  LV +  RS
Sbjct: 167 GGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRS 202

Length = 328

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 227 IANGSEEIEIVTIVDILRRAKV------DVVVASVERSTQIVASQGVKIIADKSISDAAE 280
             +G  E+++   +D+L RA         V + S   +  + +  GV I  D  ++DA E
Sbjct: 2   TFDGFNELDLAIALDVLNRANRLGGDVFRVRIVSP-DAQPVTSMNGVTITVDAPLADAPE 60

Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 340
           +  D +++PGG           +L   L+    AG++ GAVCS  ++L + GLL  + AT
Sbjct: 61  A--DAVLVPGGPGTRAAAADPALLA-QLQLADPAGQLLGAVCSGALLLAEAGLLDGRPAT 117

Query: 341 AHPSVIGKLT----NEVVNGTKVVVDGKVITSRGLANVIDFALAIV 382
            H ++   L       ++     V DG + T+ G    ID AL ++
Sbjct: 118 THWTLKPWLREAGPKVLLIDRPFVADGNLATAGGCLAAIDLALWLI 163

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 66.8 bits (164), Expect = 4e-13
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 261 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 320
           + +S G+++  D ++ DA     D + + GG+ GA R     +L  L +  +  G   G 
Sbjct: 45  VTSSNGLRVAPDAALEDAPP--LDYLFVVGGL-GARRAVTPALLAWLRRAAR-RGVALGG 100

Query: 321 VCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE----VVNGTKVVVDGKVITSRGLANVID 376
           + +   +L + GLL  ++AT H   +           V      +DG  +T  G    +D
Sbjct: 101 IDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGTAALD 160

Query: 377 FALAIVSKFFGHARTRSVAEGLVFE 401
             L ++++  G A    VAE  + +
Sbjct: 161 LMLELIARDHGAALAARVAEQFLHD 185

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 65.6 bits (161), Expect = 8e-13
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 7/156 (4%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLV-ADTSISNCSH 77
            V +    G E++E    +  LR AGA+V +A  E   E++   G   V  D +I++   
Sbjct: 1   KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDA 60

Query: 78  QVFDLIALPGGM-PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 136
             +D + +PGG  P   +LR            AE  +   AIC  P V L+  G++R ++
Sbjct: 61  DDYDALVIPGGTNPD--KLRRDPDAVAFVRAFAEAGKPVAAICHGPWV-LISAGVVRGRK 117

Query: 137 ITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPG 170
           +T +P+  D L    A  V   + V G + TSR P 
Sbjct: 118 LTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPD 153

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 27/170 (15%)

Query: 38  DVLRRA-----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 92
           +V  RA       +V + S      V + SG  ++ DTS ++      D++ +PGG    
Sbjct: 19  EVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADPPD--LDVLLVPGGGGTR 75

Query: 93  VRLRDCEILKKITSKQAEEKRLYGAIC-------AAPAVTLLPWGLLRRKQITCHPAFTD 145
             + D  +L  I  +QA   +   ++C       AA        GLL  ++ T H A  D
Sbjct: 76  ALVNDPALLDFIR-RQAARAKYVTSVCTGALLLAAA--------GLLDGRRATTHWAAID 126

Query: 146 KLPTFWA---VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 192
            L  F A   V +   V G + TS G     + AL LV +LFGE +A+ +
Sbjct: 127 WLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAV 176

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 9/156 (5%)

Query: 249 DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLL 308
           ++ V S E    + +S G+ ++AD  +   A    D +I+PGG     R     +L  L 
Sbjct: 34  ELRVCSPEGGP-VRSSSGLSLVADAGLDALAA--ADTVIVPGGPDVDGRPPPPALLAAL- 89

Query: 309 KEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-----EVVNGTKVVVDG 363
           +     G    +VC+   VL + GLL  ++AT H +    L        V      V DG
Sbjct: 90  RRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDG 149

Query: 364 KVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLV 399
            V TS G+   ID  L +V +  G A    VA  LV
Sbjct: 150 NVWTSAGVTAGIDLCLHLVREDLGAAVANRVARRLV 185

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 24/151 (15%)

Query: 244 RRAKVDVVVASVERSTQIVASQ-GVKIIADKSISDAAESVYDLIILPGGVA----GAERL 298
                +V   S     + V S  G++++ D S+ D     YDL+ILPGG +     A  L
Sbjct: 23  SYEGFEVRTVSPTG--EPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDL 80

Query: 299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT--------AHPSVIGKLT 350
               ++++ LK+ K       A+C + + L + GLL  +K T        AH    G   
Sbjct: 81  AG--LVRQALKQGKPV----AAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAE 134

Query: 351 NEVVNGTKVVVDGKVITSRGLANVIDFALAI 381
                  + V DG +IT+ G A V +FA  I
Sbjct: 135 YYDEP--QAVSDGNLITANGTAPV-EFAAEI 162

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 78
            +LV      E+ E +  +D LR AG +V   S E    V    G  +  D +I   + +
Sbjct: 1   KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTV-GKHGYSVTVDATIDEVNPE 59

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
            +D + +PGG      LR      ++  +  E+ +   AIC  P + L+  G+LR K++T
Sbjct: 60  EYDALVIPGGR-APEYLRLNNKAVRLVREFVEKGKPVAAICHGPQL-LISAGVLRGKKLT 117

Query: 139 CHPAFTDKLPTF---WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
            +PA  D +      +     + V G + TSR P     F    ++ L
Sbjct: 118 SYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFLKLL 165

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV 282
           V + +  G EE+E+ + +D LR A  +V V S +                   SD     
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPD--------------GGPVESDVDLDD 46

Query: 283 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 328
           YD +ILPGG    + L +   L  LL+E   AG+    +C    +L
Sbjct: 47  YDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV 282
           V + +  GSEE+E+ + +D LR A  +V V S +                   SD     
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPD--------------GGPVESDVDLDD 46

Query: 283 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 328
           YD +ILPGG    + L     L  LL+E   AG+    +C    +L
Sbjct: 47  YDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 22/172 (12%)

Query: 243 LRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 302
                 +V + S      ++ + G+ I+ D +++D      DL+I+PG     + L  + 
Sbjct: 33  GGAPPFEVRLVS-LDGGPVLLAGGILILPDATLADVPA--PDLVIVPGLGGDPDELLLAD 89

Query: 303 I--LKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH-----------PSVIGKL 349
              L   L+ Q   G    A C+   +L + GLL  ++AT H           P V    
Sbjct: 90  NPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKV---- 145

Query: 350 TNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE 401
              +     VV DG +IT+ G     D AL ++ +  G    + VA  L+ +
Sbjct: 146 --RLDPDRVVVTDGNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID 195

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 22/168 (13%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST-QIVA--------------SQG 266
           ++LI   +  E+ E++     L+    +V V +  +     V                 G
Sbjct: 1   KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPG 60

Query: 267 VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326
            +        +     YD +++PGG A  E L+    +  +++    A +   A+C  P 
Sbjct: 61  HRFAVTADFDEVDPDDYDALVIPGGRA-PEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ 119

Query: 327 VLHKHGLLKAKKATAHPSVIGKLTNEVVNGT----KVVVDGKVITSRG 370
           +L   G+LK ++ TA+P+   K   E+  GT     VVVDG ++T++ 
Sbjct: 120 ILAAAGVLKGRRCTAYPAC--KPEVELAGGTVVDDGVVVDGNLVTAQA 165

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 17/171 (9%)

Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGA------QVTMASVEPQLEVEASSGTRLVADTSISN 74
           L   GF   E++  I +DVL RA        +V + S + Q  V + +G  +  D  ++ 
Sbjct: 1   LTFDGF--NELDLAIALDVLNRANRLGGDVFRVRIVSPDAQP-VTSMNGVTITVDAPLA- 56

Query: 75  CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 134
                 D + +PGG        D  +L ++        +L GA+C+   + L   GLL  
Sbjct: 57  -DAPEADAVLVPGGPGTRAAAADPALLAQL-QLADPAGQLLGAVCSGALL-LAEAGLLDG 113

Query: 135 KQITCH----PAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVE 181
           +  T H    P   +  P    +       G + T+ G   + + AL L+ 
Sbjct: 114 RPATTHWTLKPWLREAGPKVLLIDRPFVADGNLATAGGCLAAIDLALWLIA 164

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|181818 PRK09393, ftrA, transcriptional activator FtrA; Provisional

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 252 VASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ 311
           VA+VE    + A+ G+ ++AD  +     +  D I++PG   G +      +L+ L    
Sbjct: 48  VAAVEPGP-LRAAGGITVVADGGLELLDRA--DTIVIPGW-RGPDAPVPEPLLEALRAAH 103

Query: 312 KVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-----EVVNGTKVVVDGKVI 366
               R+  ++CS   VL   GLL  ++AT H     +L        V      V +G+++
Sbjct: 104 ARGARLC-SICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQIL 162

Query: 367 TSRGLANVIDFALAIVSKFFGHARTRSVAEGLV 399
           TS G A  ID  L +V + FG      VA  LV
Sbjct: 163 TSAGSAAGIDLCLHLVRRDFGSEAANRVARRLV 195

Length = 322

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 25/152 (16%)

Query: 58  VEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR--------LRDCEILKKITSKQA 109
           V +S+G R+  D ++ +      D + + GG+             LR            A
Sbjct: 45  VTSSNGLRVAPDAALED--APPLDYLFVVGGLGARRAVTPALLAWLRRA----------A 92

Query: 110 EEKRLYGAICAAPAVTLLPWGLLRRKQITCH----PAFTDKLPTFWAVKSNIHVSGEVTT 165
                 G I     + L   GLL  ++ T H     AF +  P     +    + G+  T
Sbjct: 93  RRGVALGGIDTGAFL-LARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLT 151

Query: 166 SRGPGTSFEFALCLVEQLFGESVAKEIGELLL 197
             G   + +  L L+ +  G ++A  + E  L
Sbjct: 152 CAGGTAALDLMLELIARDHGAALAARVAEQFL 183

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 29/131 (22%), Positives = 42/131 (32%), Gaps = 22/131 (16%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           V V +  G EE+E    +D LR AGA+V + S +                          
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDD-------------- 46

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D + LPGG      L   E L  +  + A   +    IC    + +L            
Sbjct: 47  YDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLVLGVQ--------F 98

Query: 140 HPAFTDKLPTF 150
           HP   D     
Sbjct: 99  HPEAIDGAEAG 109

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 14/105 (13%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           V V +  G+EE+E    +D LR AGA+V + S +                          
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDD-------------- 46

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV 124
           +D + LPGG      L   E L  +  + A   +    IC    +
Sbjct: 47  YDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQL 91

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 57  EVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYG 116
            V +SSG  +  D  +        D++ + GG+     +    +L  +        RL G
Sbjct: 56  PVRSSSGLSIAPDGGLEAAPP--IDILPVCGGLGPERPVNAPALLAWLRRAARRGARL-G 112

Query: 117 AICAAPAVTLLPWGLLRRKQITCH----PAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTS 172
            +C   A  L   GLL  ++ T H      F ++ P          + G+  T  G   +
Sbjct: 113 GLCTG-AFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRITCAGGTAA 171

Query: 173 FEFALCLVEQLFGESVAKEIGELLLMH 199
            +  L L+ + FG ++A  +   L++ 
Sbjct: 172 IDLMLALIRRDFGAALANRVARQLVVD 198

Length = 328

>gnl|CDD|153226 cd03132, GATase1_catalase, Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 281
           +V I +A+G +  E+  +   L+ A  +V V +      +V S G  +  D++ + A   
Sbjct: 3   KVGILVADGVDAAELSALKAALKAAGANVKVVA-PTLGGVVDSDGKTLEVDQTYAGAPSV 61

Query: 282 VYDLIILPGGVAGAERLQKS 301
           ++D +++PGG   A  L  S
Sbjct: 62  LFDAVVVPGGAEAAFALAPS 81

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; Catalase-3 is associated with growing conditions. HP-II is produced in stationary phase. Catalase-1 is induced by ethanol and heat shock. Catalase-3 is induced under stress conditions such a hydrogen peroxide, paraquat, cadmium, heat shock, uric acid and nitrate treatment. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
KOG2764	247	consensus Putative transcriptional regulator DJ-1	100.0
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	100.0
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	100.0
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	100.0
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	100.0
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	100.0
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	100.0
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	100.0
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	100.0
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	100.0
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	99.98
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	99.98
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	99.97
COG4977	328	Transcriptional regulator containing an amidase do	99.97
COG4977	328	Transcriptional regulator containing an amidase do	99.97
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.97
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.97
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.97
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.97
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.97
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.97
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.97
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.97
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.97
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.97
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.96
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.96
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.96
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.96
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.96
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.94
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.94
PRK04155	287	chaperone protein HchA; Provisional	99.94
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.93
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.93
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.93
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.92
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.92
PRK04155	287	chaperone protein HchA; Provisional	99.91
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.91
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.91
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.9
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.9
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.88
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.87
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.87
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.85
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.85
PRK11249	752	katE hydroperoxidase II; Provisional	99.71
PRK11249	752	katE hydroperoxidase II; Provisional	99.66
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.22
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.21
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.19
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.09
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.06
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.01
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.98
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	98.89
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.87
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.82
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	98.78
COG3155	217	ElbB Uncharacterized protein involved in an early	98.77
COG3155	217	ElbB Uncharacterized protein involved in an early	98.76
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.73
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.67
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.59
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.56
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.56
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.55
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.53
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.42
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.41
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.34
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.34
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.3
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.25
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	98.18
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.15
PRK08250	235	glutamine amidotransferase; Provisional	98.09
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.08
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.07
PRK07053	234	glutamine amidotransferase; Provisional	98.07
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	98.06
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.05
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.0
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	97.96
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	97.95
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	97.9
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	97.9
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	97.88
PRK08250	235	glutamine amidotransferase; Provisional	97.87
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	97.86
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	97.86
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	97.85
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	97.85
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	97.8
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	97.76
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	97.74
PRK07053	234	glutamine amidotransferase; Provisional	97.74
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	97.73
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.73
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.68
PRK06490	239	glutamine amidotransferase; Provisional	97.65
PHA03366	1304	FGAM-synthase; Provisional	97.61
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	97.59
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	97.58
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.58
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	97.58
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	97.57
PRK05665	240	amidotransferase; Provisional	97.53
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	97.52
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	97.52
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	97.43
PRK06895	190	putative anthranilate synthase component II; Provi	97.43
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.42
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.41
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	97.33
PRK09065	237	glutamine amidotransferase; Provisional	97.29
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.29
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.2
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.19
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	97.19
PRK05665	240	amidotransferase; Provisional	97.19
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.14
PHA03366	1304	FGAM-synthase; Provisional	97.12
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	97.11
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	97.11
PRK00784	488	cobyric acid synthase; Provisional	97.1
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.07
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	97.03
PRK09065	237	glutamine amidotransferase; Provisional	97.01
PRK07567	242	glutamine amidotransferase; Provisional	97.0
PRK07765	214	para-aminobenzoate synthase component II; Provisio	96.98
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	96.98
PRK06490	239	glutamine amidotransferase; Provisional	96.98
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	96.97
PRK00784	488	cobyric acid synthase; Provisional	96.95
PRK06895	190	putative anthranilate synthase component II; Provi	96.93
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	96.92
PLN02617	538	imidazole glycerol phosphate synthase hisHF	96.89
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	96.88
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	96.87
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	96.85
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	96.84
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	96.83
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	96.81
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	96.8
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	96.78
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	96.77
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	96.74
PRK08007	187	para-aminobenzoate synthase component II; Provisio	96.72
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	96.71
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	96.71
PRK06774	191	para-aminobenzoate synthase component II; Provisio	96.7
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	96.69
PRK05380	533	pyrG CTP synthetase; Validated	96.67
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	96.66
PRK05670	189	anthranilate synthase component II; Provisional	96.62
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	96.6
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	96.49
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	96.48
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	96.44
PRK08857	193	para-aminobenzoate synthase component II; Provisio	96.43
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	96.41
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	96.4
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	96.37
CHL00101	190	trpG anthranilate synthase component 2	96.37
PRK07567	242	glutamine amidotransferase; Provisional	96.35
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	96.34
PRK07765	214	para-aminobenzoate synthase component II; Provisio	96.33
PRK05637	208	anthranilate synthase component II; Provisional	96.31
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	96.24
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	96.24
PRK00758	184	GMP synthase subunit A; Validated	96.24
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	96.16
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	96.14
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	96.14
PLN02335	222	anthranilate synthase	96.12
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	96.08
PLN02617	538	imidazole glycerol phosphate synthase hisHF	96.07
PRK08007	187	para-aminobenzoate synthase component II; Provisio	96.06
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	96.06
PRK13566	720	anthranilate synthase; Provisional	96.05
PLN02327	557	CTP synthase	95.98
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	95.91
PRK06774	191	para-aminobenzoate synthase component II; Provisio	95.91
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	95.9
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	95.86
PRK08857	193	para-aminobenzoate synthase component II; Provisio	95.83
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	95.82
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	95.79
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	95.79
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	95.76
PRK05670	189	anthranilate synthase component II; Provisional	95.71
TIGR00313	475	cobQ cobyric acid synthase CobQ.	95.7
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	95.69
TIGR00313	475	cobQ cobyric acid synthase CobQ.	95.66
PLN02335	222	anthranilate synthase	95.62
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	95.5
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	95.5
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	95.48
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	95.48
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	95.31
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	95.31
CHL00101	190	trpG anthranilate synthase component 2	95.29
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	95.17
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	95.17
PRK13566	720	anthranilate synthase; Provisional	95.16
PRK06186	229	hypothetical protein; Validated	95.12
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	95.05
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	95.02
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	94.85
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	94.78
PRK00758	184	GMP synthase subunit A; Validated	94.77
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	94.69
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	94.63
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	94.62
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	94.36
PRK05637	208	anthranilate synthase component II; Provisional	94.34
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	94.34
PLN02347	536	GMP synthetase	94.24
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	94.1
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	94.09
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	94.08
PRK05368	302	homoserine O-succinyltransferase; Provisional	94.05
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	94.05
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	93.87
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	93.8
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	93.72
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	93.4
COG3442	250	Predicted glutamine amidotransferase [General func	93.24
PRK00074	511	guaA GMP synthase; Reviewed	93.2
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	93.13
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	93.08
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	92.93
PRK06186	229	hypothetical protein; Validated	92.74
PRK05380	533	pyrG CTP synthetase; Validated	92.62
PLN02347	536	GMP synthetase	92.13
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	91.86
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	91.78
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	91.75
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	91.71
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	91.6
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	91.53
COG2071	243	Predicted glutamine amidotransferases [General fun	91.39
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	90.88
PRK05368	302	homoserine O-succinyltransferase; Provisional	90.68
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	90.07
PRK00074	511	guaA GMP synthase; Reviewed	89.75
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	89.67
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	89.5
COG3442	250	Predicted glutamine amidotransferase [General func	89.49
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	89.27
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	89.1
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	88.87
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	88.84
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	88.58
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	88.47
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	88.39
COG4285	253	Uncharacterized conserved protein [Function unknow	88.19
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	87.84
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	87.62
PLN02327	557	CTP synthase	87.53
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	87.44
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	86.89
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	86.22
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	86.08
PLN02889	918	oxo-acid-lyase/anthranilate synthase	86.05
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	85.51
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	84.6
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	84.01
COG4285	253	Uncharacterized conserved protein [Function unknow	83.22
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	82.72
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	82.24
PRK03708	277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	82.23
COG2071	243	Predicted glutamine amidotransferases [General fun	81.49
PRK03708	277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	81.29
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	80.92
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	80.76
PRK03372	306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	80.51

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=100.00  E-value=8.7e-35  Score=248.80  Aligned_cols=241  Identities=38%  Similarity=0.554  Sum_probs=208.3

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      .+++.|+..++.++.|+..+.++|++.|.+|.+++++++.+++++.+..+.||..+.+.-...||+++||||.++...+.
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~   84 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS   84 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence            45789999999999999999999999999999999999889999999999999988887768999999999988888899


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccHHH
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE  174 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~~~  174 (405)
                      +.+.+.+.+++|.+.+++|++||+|++++|+..|++.|+++|+|+...+.+.+  ++|+++++|.|||++||.|+..+++
T Consensus        85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e  164 (247)
T KOG2764|consen   85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE  164 (247)
T ss_pred             hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence            99999999999999999999999999778888999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHhcChHHHHHHHHhcccccccCccccccccccccccCCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEe
Q 015523          175 FALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVAS  254 (405)
Q Consensus       175 ~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs  254 (405)
                      |++.++|++.|++.+.++.+.|.+...+                        +.|+-...|.....+.+.+ +.++.+-.
T Consensus       165 Fal~lvEqL~GKeka~~v~~~l~l~~~~------------------------v~~~~~~~e~~a~~~~~~~-~~~v~~~~  219 (247)
T KOG2764|consen  165 FALKLVEQLGGKEKANEVKKPLSLLFLP------------------------VAPEKKAGEACATADHDLE-GRQVPVEK  219 (247)
T ss_pred             HHHHHHHHhcCchhhhhhhccceeeccc------------------------cCCCchhcceecceehhhh-cCcceeec
Confidence            9999999999999999998877665544                        4455555666666666666 54444333


Q ss_pred             ecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCc
Q 015523          255 VERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV  292 (405)
Q Consensus       255 ~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~  292 (405)
                      +.          .+.....+++|+..++||.+++|||.
T Consensus       220 ~g----------~~~~~~~~~dd~~~~syD~ivlPgg~  247 (247)
T KOG2764|consen  220 VG----------HNFAKTVAWDDAAVSSYDLIVLPGGR  247 (247)
T ss_pred             cc----------cceEEEEEehhhhcccccEEEecCCC
Confidence            22          22233334888878999999999983

>TIGR01383 not_thiJ DJ-1 family protein

Probab=100.00  E-value=9.2e-34  Score=248.05  Aligned_cols=175  Identities=43%  Similarity=0.695  Sum_probs=161.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEE--EeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVV--ASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~--vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      ||+|+++|||++.|+..+.++|+.+|+.+++  +|++++.+++++.|+++.++..+++.+..+||+|+||||......+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~   80 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR   80 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence            6899999999999999999999999977765  99987548999999999999999987668899999999964455566


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcCcc-cCCcEEEcCCeEecCChhhHHHHH
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVV-NGTKVVVDGKVITSRGLANVIDFA  378 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~~~-~~~~~v~dg~iiTa~g~~~~~~~~  378 (405)
                      .++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||.+.+.+++..+ .++.++.|||++||+|+.++++|+
T Consensus        81 ~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~~  160 (179)
T TIGR01383        81 NSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEFA  160 (179)
T ss_pred             hCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHHH
Confidence            8899999999999999999999999999999999999999999999999988666 589999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHh
Q 015523          379 LAIVSKFFGHARTRSVAE  396 (405)
Q Consensus       379 l~~i~~l~g~~~a~~v~~  396 (405)
                      +++|+++.|++.|+++++
T Consensus       161 l~li~~~~g~~~a~~va~  178 (179)
T TIGR01383       161 LALVELLCGKEKAQEVAA  178 (179)
T ss_pred             HHHHHHhcCHHHHHHhhc
Confidence            999999999999999986

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=5e-33  Score=245.14  Aligned_cols=175  Identities=27%  Similarity=0.398  Sum_probs=160.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  295 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~  295 (405)
                      |+|+++|||.+.|+..+.|+|+.++       |+++++|++++ ++++++|+++.+|..+++.  .+||+|+||||. ..
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~--~~~D~liipGg~-~~   76 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDAL--AAADTVIVPGGP-DV   76 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCcccc--CCCCEEEECCCc-cc
Confidence            6899999999999999999999987       99999999998 9999999999999998865  789999999996 34


Q ss_pred             HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----Ccc-cCCcEEEcCCeEecCC
Q 015523          296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVV-NGTKVVVDGKVITSRG  370 (405)
Q Consensus       296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~~-~~~~~v~dg~iiTa~g  370 (405)
                      .....++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++    ..+ .+..++.|||+|||+|
T Consensus        77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g  156 (187)
T cd03137          77 DGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAG  156 (187)
T ss_pred             ccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEccc
Confidence            44678999999999999999999999999999999999999999999999988876    233 3467899999999999


Q ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523          371 LANVIDFALAIVSKFFGHARTRSVAEGLVFE  401 (405)
Q Consensus       371 ~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~  401 (405)
                      +.+++++++++|++++|++.|+++++.|+++
T Consensus       157 ~~~~~d~~l~li~~~~g~~~a~~~a~~l~~~  187 (187)
T cd03137         157 VTAGIDLCLHLVREDLGAAVANRVARRLVVP  187 (187)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            9999999999999999999999999998763

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=6.3e-33  Score=243.98  Aligned_cols=174  Identities=22%  Similarity=0.361  Sum_probs=161.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  295 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~  295 (405)
                      |+|+++|||.+.|+..++|+|+.++       |+++++|.+++ ++++++|+++.++..+++.  .+||+|+||||.. .
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~-~   76 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLG-A   76 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCcccccc--CCCCEEEEeCCCC-c
Confidence            6899999999999999999999875       89999999997 9999999999999999766  7899999999963 3


Q ss_pred             HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----CcccCCcEEEcCCeEecCCh
Q 015523          296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVITSRGL  371 (405)
Q Consensus       296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~~~~~~~v~dg~iiTa~g~  371 (405)
                      . ...++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.|++    ..+.++.+|.|||++|++|+
T Consensus        77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~  155 (185)
T cd03136          77 R-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGG  155 (185)
T ss_pred             c-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccH
Confidence            3 678999999999999999999999999999999999999999999999998876    35678899999999999999


Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523          372 ANVIDFALAIVSKFFGHARTRSVAEGLVFE  401 (405)
Q Consensus       372 ~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~  401 (405)
                      .++++|+++++++++|++.|+++++.|+++
T Consensus       156 ~~~~d~~l~ii~~~~g~~~a~~va~~~~~~  185 (185)
T cd03136         156 TAALDLMLELIARDHGAALAARVAEQFLHD  185 (185)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence            999999999999999999999999999875

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>TIGR01383 not_thiJ DJ-1 family protein

Probab=100.00  E-value=6.9e-33  Score=242.52  Aligned_cols=175  Identities=47%  Similarity=0.736  Sum_probs=158.2

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcCCEEEE--EecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTM--ASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~--vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      ||+|+++|||+..|+..+.++|+.+++++++  +|++++.+++++.|+++.++..+++.+..+||+|+||||......+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~   80 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR   80 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence            6999999999999999999999999977776  99987448999999999999999987656899999999953345556


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCcc-ccCcEEEeCCeEcCCCcccHHHH
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWA-VKSNIHVSGEVTTSRGPGTSFEF  175 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~-~~~~~v~dg~iiT~~g~~~~~~~  175 (405)
                      +++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||.+.+.+.+..+ .++.++.||+++||+|+.++.|+
T Consensus        81 ~~~~l~~~l~~~~~~~~~i~~ic~G-~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~  159 (179)
T TIGR01383        81 NSKLLLNILKKQESKGKLVAAICAA-PAVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEF  159 (179)
T ss_pred             hCHHHHHHHHHHHHCCCEEEEEChh-HHHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHH
Confidence            7899999999999999999999995 568999999999999999999988888655 57889999999999999999999


Q ss_pred             HHHHHHHhcChHHHHHHHH
Q 015523          176 ALCLVEQLFGESVAKEIGE  194 (405)
Q Consensus       176 ~l~ii~~~~g~~~a~~~a~  194 (405)
                      ++++|+++.|++.|+++++
T Consensus       160 ~l~li~~~~g~~~a~~va~  178 (179)
T TIGR01383       160 ALALVELLCGKEKAQEVAA  178 (179)
T ss_pred             HHHHHHHhcCHHHHHHhhc
Confidence            9999999999999999975

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=5e-33  Score=244.32  Aligned_cols=175  Identities=28%  Similarity=0.499  Sum_probs=163.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCC-----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAK-----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~-----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      |+|+++|||++.|+..+.++|+.+|     |+++++|++++ ++++++|.++.++..+++.  .+||+|+||||. ....
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~-~~~~   76 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGG-GTRA   76 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccC--CCCCEEEECCCc-chhh
Confidence            6899999999999999999999999     99999999998 9999999999999999876  689999999996 4555


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcC--cc-cCCcEEEcCCeEecCChhhH
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE--VV-NGTKVVVDGKVITSRGLANV  374 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~--~~-~~~~~v~dg~iiTa~g~~~~  374 (405)
                      +..++.+++||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.  .+ .+++++.|||++||+|+.++
T Consensus        77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~  156 (183)
T cd03139          77 LVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAG  156 (183)
T ss_pred             hccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHH
Confidence            7789999999999999999999999999999999999999999999999998872  33 88999999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523          375 IDFALAIVSKFFGHARTRSVAEGLVFE  401 (405)
Q Consensus       375 ~~~~l~~i~~l~g~~~a~~v~~~l~~~  401 (405)
                      .+|++++|+++.|++.|+++++.|+++
T Consensus       157 ~~~~l~ii~~~~g~~~a~~~a~~~~~~  183 (183)
T cd03139         157 IDMALALVARLFGEELAQAVALLIEYD  183 (183)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=2.7e-32  Score=242.03  Aligned_cols=176  Identities=26%  Similarity=0.407  Sum_probs=161.0

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhC------------CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRA------------KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG  290 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~------------~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg  290 (405)
                      |+|+++|||...++..++|+|+.+            +|+|+++|++++ ++.++.|+++.+|..+++.  ++||+|+|||
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~--~~~D~liIpg   77 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADV--PAPDLVIVPG   77 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceeccccccccc--CCCCEEEECC
Confidence            689999999999999999999974            489999999998 9999999999999988876  7999999999


Q ss_pred             CccchH--hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----Cc-ccCCcEEEcC
Q 015523          291 GVAGAE--RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EV-VNGTKVVVDG  363 (405)
Q Consensus       291 G~~~~~--~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~-~~~~~~v~dg  363 (405)
                      |.....  .+..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.|++    .. ..++.++.||
T Consensus        78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg  157 (195)
T cd03138          78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDG  157 (195)
T ss_pred             CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCC
Confidence            864444  5678999999999999999999999999999999999999999999999888876    23 3358899999


Q ss_pred             CeEecCChhhHHHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523          364 KVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE  401 (405)
Q Consensus       364 ~iiTa~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~  401 (405)
                      |++||+|+.+++++++++|+++.|.+.|++|++.|.++
T Consensus       158 ~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~  195 (195)
T cd03138         158 NLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID  195 (195)
T ss_pred             CEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999998864

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=100.00  E-value=6.5e-32  Score=232.70  Aligned_cols=162  Identities=48%  Similarity=0.714  Sum_probs=151.1

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceee-cCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV-ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS  301 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~-~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~  301 (405)
                      |+|+++|||.+.|+..+.++|+.+||+++++|++++ ++. ++.|+.+.++..+++.++.+||+|+||||......+.++
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~   79 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN   79 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence            689999999999999999999999999999999998 765 689999999999999877899999999996345666789


Q ss_pred             hHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcCcccCCcEEEcCCeEecCChhhHHHHHHHH
Q 015523          302 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAI  381 (405)
Q Consensus       302 ~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiTa~g~~~~~~~~l~~  381 (405)
                      +.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+.+..+.++.+|+|||+|||+|+.++.+|++++
T Consensus        80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~l  159 (163)
T cd03135          80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKI  159 (163)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999977777888999999999999999999999999


Q ss_pred             HHHc
Q 015523          382 VSKF  385 (405)
Q Consensus       382 i~~l  385 (405)
                      |+++
T Consensus       160 i~~l  163 (163)
T cd03135         160 VEAL  163 (163)
T ss_pred             HHhC
Confidence            9975

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=1.5e-32  Score=241.34  Aligned_cols=175  Identities=28%  Similarity=0.366  Sum_probs=161.1

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcC-----CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAG-----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~-----~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      |+||++|||++.|+..+.++|+.++     |+++++|++++ ++++++|..+.+|..+.+.+  +||+|+||||. ....
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~~--~~D~lvipgg~-~~~~   76 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADPP--DLDVLLVPGGG-GTRA   76 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccCC--CCCEEEECCCc-chhh
Confidence            6899999999999999999999998     99999999998 99999999999999998754  79999999994 4555


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Cc-c-ccCcEEEeCCeEcCCCccc
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW-A-VKSNIHVSGEVTTSRGPGT  171 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~-~-~~~~~v~dg~iiT~~g~~~  171 (405)
                      +..++.+++||+++++++|+|+++|+|+ ++|+++|+|+|+++|+||...+.+++ ++ + .++++++|||++||+|+.+
T Consensus        77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~-~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a  155 (183)
T cd03139          77 LVNDPALLDFIRRQAARAKYVTSVCTGA-LLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSA  155 (183)
T ss_pred             hccCHHHHHHHHHhcccCCEEEEEchHH-HHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHH
Confidence            7788999999999999999999999965 58999999999999999999999887 32 3 7788999999999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHhcccc
Q 015523          172 SFEFALCLVEQLFGESVAKEIGELLLMH  199 (405)
Q Consensus       172 ~~~~~l~ii~~~~g~~~a~~~a~~l~~~  199 (405)
                      +.++++++|+++.|++.++++++.|+++
T Consensus       156 ~~~~~l~ii~~~~g~~~a~~~a~~~~~~  183 (183)
T cd03139         156 GIDMALALVARLFGEELAQAVALLIEYD  183 (183)
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            9999999999999999999999998864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=100.00  E-value=3e-31  Score=235.41  Aligned_cols=183  Identities=36%  Similarity=0.595  Sum_probs=166.4

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecC--CceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER--STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~--~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      ++||+|+++|||.+.|+..|+++|++++++++++|.++  +.+++++.|+++.++..+++.+..+||+|+||||......
T Consensus         2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~   81 (196)
T PRK11574          2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAEC   81 (196)
T ss_pred             CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhh
Confidence            58999999999999999999999999999999999864  2379999999999999999876678999999999644555


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHH-HHHcCCCCCCeeecCcchhhhhhcCcccCCcEEEcC--CeEecCChhhH
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANV  374 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~-La~aGlL~g~~~t~~~~~~~~l~~~~~~~~~~v~dg--~iiTa~g~~~~  374 (405)
                      +..++.+++||++++++|++|+++|+|+++ |+.+|+|+|+++|.++.+.+.+.+..+.++.++.|+  |+|||+|+.++
T Consensus        82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~  161 (196)
T PRK11574         82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTA  161 (196)
T ss_pred             hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchH
Confidence            678889999999999999999999999984 677999999999999998888888777778888886  99999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHhhccccc
Q 015523          375 IDFALAIVSKFFGHARTRSVAEGLVFEY  402 (405)
Q Consensus       375 ~~~~l~~i~~l~g~~~a~~v~~~l~~~~  402 (405)
                      .+|++++|+++.|.+.|+++++.|+++.
T Consensus       162 ~dlal~li~~~~G~~~a~~va~~~~~~~  189 (196)
T PRK11574        162 IDFALKIIDLLVGREKAHEVASQLVMAA  189 (196)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHhhhccCc
Confidence            9999999999999999999999998865

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.98  E-value=4.5e-32  Score=238.53  Aligned_cols=174  Identities=20%  Similarity=0.266  Sum_probs=158.5

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcC-------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS   92 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~   92 (405)
                      |+|+++|||+.+|+..+.|+|+.++       |++++++.+++ ++++++|+++.+|..+.+.+  +||+|+||||. ..
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~~--~~D~liipgg~-~~   76 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDAP--PLDYLFVVGGL-GA   76 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCccccccC--CCCEEEEeCCC-Cc
Confidence            6899999999999999999998764       89999999997 99999999999999987654  79999999994 33


Q ss_pred             hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC----CccccCcEEEeCCeEcCCC
Q 015523           93 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVKSNIHVSGEVTTSRG  168 (405)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~----~~~~~~~~v~dg~iiT~~g  168 (405)
                      . ...++.+++||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++    .++.+++++.|||++||+|
T Consensus        77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g-~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g  154 (185)
T cd03136          77 R-RAVTPALLAWLRRAARRGVALGGIDTG-AFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAG  154 (185)
T ss_pred             c-ccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEecc
Confidence            3 678899999999999999999999996 568999999999999999999998876    4556778999999999999


Q ss_pred             cccHHHHHHHHHHHhcChHHHHHHHHhcccc
Q 015523          169 PGTSFEFALCLVEQLFGESVAKEIGELLLMH  199 (405)
Q Consensus       169 ~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~  199 (405)
                      +.+++|+++++|+++.|++.|+.+++.|+++
T Consensus       155 ~~~~~d~~l~ii~~~~g~~~a~~va~~~~~~  185 (185)
T cd03136         155 GTAALDLMLELIARDHGAALAARVAEQFLHD  185 (185)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence            9999999999999999999999999998864

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.98  E-value=8.7e-32  Score=237.22  Aligned_cols=174  Identities=26%  Similarity=0.304  Sum_probs=157.4

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcC-------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS   92 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~   92 (405)
                      |+|+++|||++.|+..+.|+|+.++       |++++++++++ ++++++|+++.+|..+.+.+  +||+|+||||. ..
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~~--~~D~liipGg~-~~   76 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDALA--AADTVIVPGGP-DV   76 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCccccC--CCCEEEECCCc-cc
Confidence            6899999999999999999999886       99999999997 99999999999999988554  79999999994 44


Q ss_pred             hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-C---cccc-CcEEEeCCeEcCC
Q 015523           93 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAVK-SNIHVSGEVTTSR  167 (405)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~---~~~~-~~~v~dg~iiT~~  167 (405)
                      .....++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.+++ +   .+.+ ..++.||+++||+
T Consensus        77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~  155 (187)
T cd03137          77 DGRPPPPALLAALRRAAARGARVASVCTG-AFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSA  155 (187)
T ss_pred             ccccCCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcc
Confidence            44678999999999999999999999996 458999999999999999999988887 3   3443 4588999999999


Q ss_pred             CcccHHHHHHHHHHHhcChHHHHHHHHhccc
Q 015523          168 GPGTSFEFALCLVEQLFGESVAKEIGELLLM  198 (405)
Q Consensus       168 g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~  198 (405)
                      |+.+++|+++++|+++.|++.++++++.|++
T Consensus       156 g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~  186 (187)
T cd03137         156 GVTAGIDLCLHLVREDLGAAVANRVARRLVV  186 (187)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence            9999999999999999999999999998875

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.97  E-value=1.4e-31  Score=237.44  Aligned_cols=176  Identities=22%  Similarity=0.281  Sum_probs=157.8

Q ss_pred             EEEEecCCCchhhHHHHHHHHHh------------cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRR------------AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG   87 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~------------~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg   87 (405)
                      |+|+++|||...++..++|+|+.            .+|++++++++++ ++++++|+++.+|..+++.+  +||+|+|||
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~~--~~D~liIpg   77 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADVP--APDLVIVPG   77 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceecccccccccC--CCCEEEECC
Confidence            68999999999999999999985            3599999999998 99999999999999888764  799999999


Q ss_pred             Cchhhh--ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-C---cccc-CcEEEe
Q 015523           88 GMPGSV--RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAVK-SNIHVS  160 (405)
Q Consensus        88 g~~~~~--~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~---~~~~-~~~v~d  160 (405)
                      |.....  .+..++.+++||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++ +   .+.+ ..++.|
T Consensus        78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~d  156 (195)
T cd03138          78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTG-VFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTD  156 (195)
T ss_pred             CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHH-HHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeC
Confidence            853333  4678899999999999999999999996 558999999999999999999888877 4   3343 679999


Q ss_pred             CCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccc
Q 015523          161 GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH  199 (405)
Q Consensus       161 g~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~  199 (405)
                      |+++||+|+.++.|+++++|+++.|.+.|+++++.|.++
T Consensus       157 g~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~  195 (195)
T cd03138         157 GNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID  195 (195)
T ss_pred             CCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999988764

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.97  E-value=5.9e-31  Score=244.12  Aligned_cols=184  Identities=27%  Similarity=0.376  Sum_probs=169.5

Q ss_pred             CCcCEEEEEeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC
Q 015523          218 DRMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG  290 (405)
Q Consensus       218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg  290 (405)
                      .+..+|+++++++|....+..+++.|+.+|       |.|.+++.+++ +|.+++|+.|.+|..+++.  ..+|++++.+
T Consensus         8 ~~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~--~~~~~v~v~~   84 (328)
T COG4977           8 PSPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAA--PPIDILPVCG   84 (328)
T ss_pred             CCceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCccccc--CcceEEEEec
Confidence            456899999999999999999999999987       67999999998 9999999999999999998  5699999988


Q ss_pred             CccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----CcccCCcEEEcCCeE
Q 015523          291 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVI  366 (405)
Q Consensus       291 G~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~~~~~~~v~dg~ii  366 (405)
                      |. ........+++.+||++.++.|..|+++|+|+++||++|||+|+++|+||.+.+.|++    ....++.++.||++|
T Consensus        85 g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~  163 (328)
T COG4977          85 GL-GPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRI  163 (328)
T ss_pred             CC-CcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEE
Confidence            86 3344344488999999999999999999999999999999999999999998888877    457889999999999


Q ss_pred             ecCChhhHHHHHHHHHHHccCHHHHHHHHhhcccccCCC
Q 015523          367 TSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS  405 (405)
Q Consensus       367 Ta~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~~~r~  405 (405)
                      ||+|..+++||++++|++.+|.+.|++|+++|++++.|+
T Consensus       164 T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~  202 (328)
T COG4977         164 TCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRS  202 (328)
T ss_pred             EcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccC
Confidence            999999999999999999999999999999999999885

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.97  E-value=6.5e-31  Score=243.83  Aligned_cols=214  Identities=18%  Similarity=0.276  Sum_probs=182.2

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcC-------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG   87 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg   87 (405)
                      .++.+|+++++++|..+.+..+++.|+.++       |.|.+++.+++ +|.+++|+.|.+|..+...+.  +|++++++
T Consensus         8 ~~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~~~--~~~v~v~~   84 (328)
T COG4977           8 PSPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAAPP--IDILPVCG   84 (328)
T ss_pred             CCceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCcccccCc--ceEEEEec
Confidence            456799999999999999999999999773       67999999998 999999999999999999874  99999988


Q ss_pred             CchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Cccc---cCcEEEeCCe
Q 015523           88 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAV---KSNIHVSGEV  163 (405)
Q Consensus        88 g~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~~---~~~~v~dg~i  163 (405)
                      |. ........+++..||++.+++|..++++|+ |+|+||++|||||+++|+||...+.|++ |+.+   +..+++||++
T Consensus        85 g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gict-Gaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~  162 (328)
T COG4977          85 GL-GPERPVNAPALLAWLRRAARRGARLGGLCT-GAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDR  162 (328)
T ss_pred             CC-CcccccchHHHHHHHHHHHhcCCeEEEehH-hHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCE
Confidence            83 344344448899999999999999999999 5789999999999999999999999999 6554   4669999999


Q ss_pred             EcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccCccccccccccccccCCcCEEEEEeCCCCcHHHHHHHHHHH
Q 015523          164 TTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDIL  243 (405)
Q Consensus       164 iT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~g~~~~e~~~~~~~l  243 (405)
                      |||+|+++++|+|+++|++.+|.+.|.++++.|+++..++....+..             ......+.....+..+++.+
T Consensus       163 ~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~~~~~Q~~-------------~~~~~~~~~~~~l~~~i~~m  229 (328)
T COG4977         163 ITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRSGGDRQRL-------------PLLGRLGHRDPRLLRAIELM  229 (328)
T ss_pred             EEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccCCCccccc-------------cccccCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999998883333322             22233455566666677666


Q ss_pred             HhC
Q 015523          244 RRA  246 (405)
Q Consensus       244 ~~~  246 (405)
                      +..
T Consensus       230 e~n  232 (328)
T COG4977         230 EAN  232 (328)
T ss_pred             HHh
Confidence            543

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.97  E-value=1.9e-30  Score=230.25  Aligned_cols=185  Identities=36%  Similarity=0.578  Sum_probs=164.1

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCC--CceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~--~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      .|||+|+++|||++.|+..+.++|+++++++++++..+  +.++++++|+.+.+|..+++.+..+||+|+||||......
T Consensus         2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~   81 (196)
T PRK11574          2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAEC   81 (196)
T ss_pred             CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhh
Confidence            46899999999999999999999999999999999864  2379999999999999998876568999999999534455


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCcEEEeC--CeEcCCCcccH
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSG--EVTTSRGPGTS  172 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg--~iiT~~g~~~~  172 (405)
                      +.+++.+.+||+++++++++|+++|+|+.++|+.+|+++|++.|.+..+.+.+....+.++++++|+  |+|||+|+.++
T Consensus        82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~  161 (196)
T PRK11574         82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTA  161 (196)
T ss_pred             hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchH
Confidence            6778899999999999999999999986656778999999999998887777766777788888886  99999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHhcccccc
Q 015523          173 FEFALCLVEQLFGESVAKEIGELLLMHNA  201 (405)
Q Consensus       173 ~~~~l~ii~~~~g~~~a~~~a~~l~~~~~  201 (405)
                      .||++++|+++.|.+.|+++++.|+++..
T Consensus       162 ~dlal~li~~~~G~~~a~~va~~~~~~~~  190 (196)
T PRK11574        162 IDFALKIIDLLVGREKAHEVASQLVMAAG  190 (196)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHhhhccCcc
Confidence            99999999999999999999999987763

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.97  E-value=8.2e-31  Score=225.81  Aligned_cols=162  Identities=46%  Similarity=0.672  Sum_probs=147.9

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeE-eccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccC
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE-ASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC   98 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~-~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~   98 (405)
                      |+||++|||+..|+..+.++|+.++|+++++|++++ ++. ++.|+.+.++..+++.++.+||+|+||||......+.++
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~   79 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN   79 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence            689999999999999999999999999999999998 765 689999999999998876789999999994245556778


Q ss_pred             hHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCcEEEeCCeEcCCCcccHHHHHHH
Q 015523           99 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALC  178 (405)
Q Consensus        99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~  178 (405)
                      +.+++||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.+.+.++.++++|+|||++||+|+.++.|++++
T Consensus        80 ~~l~~~l~~~~~~~~~i~~ic~g-~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~  158 (163)
T cd03135          80 EKLIKLLKEFNAKGKLIAAICAA-PAVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALK  158 (163)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchh-HHHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHH
Confidence            99999999999999999999996 55899999999999999999988886677777899999999999999999999999


Q ss_pred             HHHHh
Q 015523          179 LVEQL  183 (405)
Q Consensus       179 ii~~~  183 (405)
                      +|+++
T Consensus       159 li~~l  163 (163)
T cd03135         159 IVEAL  163 (163)
T ss_pred             HHHhC
Confidence            99974

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.97  E-value=1e-30  Score=225.90  Aligned_cols=162  Identities=28%  Similarity=0.447  Sum_probs=150.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC
Q 015523          222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS  301 (405)
Q Consensus       222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~  301 (405)
                      ||+|++++||.+.|+..+.++|.++|++++++|++++ ++.++.|.++.++..+++.++.+||+++||||. ....+..+
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~   78 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLN   78 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccC
Confidence            6899999999999999999999999999999999998 999999999999999998866789999999996 45556678


Q ss_pred             hHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccC-CcEEEcCCeEecCChhhHHHHH
Q 015523          302 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG-TKVVVDGKVITSRGLANVIDFA  378 (405)
Q Consensus       302 ~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~-~~~v~dg~iiTa~g~~~~~~~~  378 (405)
                      +.+.+||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++  ..+.+ +.+|.|||+|||+|+.++.+|+
T Consensus        79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa  158 (166)
T TIGR01382        79 NKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFN  158 (166)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHH
Confidence            89999999999999999999999999999999999999999999988886  45566 7999999999999999999999


Q ss_pred             HHHHHHc
Q 015523          379 LAIVSKF  385 (405)
Q Consensus       379 l~~i~~l  385 (405)
                      ..+++.+
T Consensus       159 ~~~~~~l  165 (166)
T TIGR01382       159 REFLKLL  165 (166)
T ss_pred             HHHHHHh
Confidence            9999976

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.97  E-value=2.6e-30  Score=246.97  Aligned_cols=182  Identities=27%  Similarity=0.345  Sum_probs=163.9

Q ss_pred             CCcCEEEEEeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC
Q 015523          218 DRMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG  290 (405)
Q Consensus       218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg  290 (405)
                      .++++|+|+++|||...|++.+.|+|+.++       |+|+++|++++ ++++++|+++.+|..+++.  +++|+|+|||
T Consensus         7 ~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~--~~~D~livpG   83 (322)
T PRK09393          7 MHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELL--DRADTIVIPG   83 (322)
T ss_pred             ccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCcccc--CCCCEEEECC
Confidence            356799999999999999999999997653       79999999998 9999999999999999976  7899999999


Q ss_pred             CccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----Cc-ccCCcEEEcCCe
Q 015523          291 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EV-VNGTKVVVDGKV  365 (405)
Q Consensus       291 G~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~-~~~~~~v~dg~i  365 (405)
                      |. +.. ...++.+++||+++.+++++|+++|+|+++||++|+|+|+++|+||...+.|++    .. ..+..++.|||+
T Consensus        84 g~-~~~-~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~i  161 (322)
T PRK09393         84 WR-GPD-APVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQI  161 (322)
T ss_pred             CC-ccc-ccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCE
Confidence            85 332 246899999999999999999999999999999999999999999999998875    22 334568999999


Q ss_pred             EecCChhhHHHHHHHHHHHccCHHHHHHHHhhcccccCC
Q 015523          366 ITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR  404 (405)
Q Consensus       366 iTa~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~~~r  404 (405)
                      +||+|+.++++++++++++.+|.+.++.+++.|+++..|
T Consensus       162 iT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~  200 (322)
T PRK09393        162 LTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHR  200 (322)
T ss_pred             EecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCC
Confidence            999999999999999999999999999999999987654

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.97  E-value=1.7e-30  Score=224.22  Aligned_cols=160  Identities=32%  Similarity=0.504  Sum_probs=149.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeec-CCceeecCCCc-EEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE-RSTQIVASQGV-KIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~-~~~~v~~~~g~-~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      ||+|+++|||++.|+..+.+.|+.++|+++++|++ ++ +++++.|. .+.++..+++..+.+||+|+||||. ....+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~   78 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR   78 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence            68999999999999999999999999999999999 77 99999999 9999999998866789999999997 556567


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHHHH
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDF  377 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~~~  377 (405)
                      .++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++  ..+.++.++.|||+|||+|+.++.+|
T Consensus        79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f  158 (165)
T cd03134          79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAF  158 (165)
T ss_pred             cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHH
Confidence            8899999999999999999999999999999999999999999999998886  56678889999999999999999999


Q ss_pred             HHHHHH
Q 015523          378 ALAIVS  383 (405)
Q Consensus       378 ~l~~i~  383 (405)
                      +..+++
T Consensus       159 ~~~~~~  164 (165)
T cd03134         159 NRAILK  164 (165)
T ss_pred             HHHHHh
Confidence            999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.97  E-value=2.4e-30  Score=223.56  Aligned_cols=162  Identities=27%  Similarity=0.371  Sum_probs=148.8

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccC
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC   98 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~   98 (405)
                      ||+|++++||++.|+..+.++|++++++++++|++++ ++.++.|..+.++.++++.++.+||+++||||. ....+..+
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~   78 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLN   78 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccC
Confidence            6999999999999999999999999999999999987 999999999999999998876689999999994 45555677


Q ss_pred             hHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--Ccccc-CcEEEeCCeEcCCCcccHHHH
Q 015523           99 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVK-SNIHVSGEVTTSRGPGTSFEF  175 (405)
Q Consensus        99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~-~~~v~dg~iiT~~g~~~~~~~  175 (405)
                      +.+.+||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++  ..+.+ +++|+|||+|||+|+.++.+|
T Consensus        79 ~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f  157 (166)
T TIGR01382        79 NKAVRLVREFVEKGKPVAAICHGP-QLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAF  157 (166)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHH-HHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHH
Confidence            899999999999999999999965 58999999999999999998888887  56677 689999999999999999999


Q ss_pred             HHHHHHHh
Q 015523          176 ALCLVEQL  183 (405)
Q Consensus       176 ~l~ii~~~  183 (405)
                      +..+++++
T Consensus       158 a~~~~~~l  165 (166)
T TIGR01382       158 NREFLKLL  165 (166)
T ss_pred             HHHHHHHh
Confidence            99999975

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.97  E-value=1.6e-30  Score=224.52  Aligned_cols=160  Identities=26%  Similarity=0.390  Sum_probs=147.4

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecC-CCceeEeccCc-EEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE-PQLEVEASSGT-RLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~-~~~~v~~~~g~-~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      ||+|+++|||+..|+..+.++|++++|++++++++ ++ +++++.|. .+.+|..+++.+..+||+|+||||. ....+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~   78 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR   78 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence            69999999999999999999999999999999999 76 99999999 9999999998876689999999994 455566


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccHHH
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE  174 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~~~  174 (405)
                      .++.+++||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.+++  ..+.++++++|||+|||+|+.++++
T Consensus        79 ~~~~~~~~l~~~~~~~~~i~~ic~G-~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~  157 (165)
T cd03134          79 RDPDAVAFVRAFAEAGKPVAAICHG-PWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPA  157 (165)
T ss_pred             cCHHHHHHHHHHHHcCCeEEEEchH-HHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHH
Confidence            7899999999999999999999996 558999999999999999998888887  6677888999999999999999999


Q ss_pred             HHHHHHH
Q 015523          175 FALCLVE  181 (405)
Q Consensus       175 ~~l~ii~  181 (405)
                      |+..+|+
T Consensus       158 f~~~~~~  164 (165)
T cd03134         158 FNRAILK  164 (165)
T ss_pred             HHHHHHh
Confidence            9999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.97  E-value=8.4e-30  Score=220.12  Aligned_cols=154  Identities=31%  Similarity=0.519  Sum_probs=137.3

Q ss_pred             EeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          226 PIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       226 l~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      |+||||.+.|++.+.|+|+.++       |++++++++++ ++.++.|+.+.++..+++.  .++|+|+||||.. ....
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~--~~~D~lvvpg~~~-~~~~   76 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDA--PDFDILVVPGGPG-FDAA   76 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCC--SCCSEEEEE-STT-HHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhc--ccCCEEEeCCCCC-chhc
Confidence            6899999999999999999998       99999999998 9999999999999999996  8999999999974 4666


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcC-----cccCCcEEEcCCeEecCChhh
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE-----VVNGTKVVVDGKVITSRGLAN  373 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~-----~~~~~~~v~dg~iiTa~g~~~  373 (405)
                      ..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.|++.     +..++.+|.|||++||+|..+
T Consensus        77 ~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~  156 (166)
T PF13278_consen   77 AKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTA  156 (166)
T ss_dssp             TT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCH
T ss_pred             ccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHH
Confidence            788999999999999999999999999999999999999999999999999882     234899999999999999999


Q ss_pred             HHHHHHHHHH
Q 015523          374 VIDFALAIVS  383 (405)
Q Consensus       374 ~~~~~l~~i~  383 (405)
                      ++|+++++|+
T Consensus       157 ~~dl~l~li~  166 (166)
T PF13278_consen  157 AIDLALYLIE  166 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999999986

...

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.97  E-value=9.3e-30  Score=243.13  Aligned_cols=187  Identities=21%  Similarity=0.250  Sum_probs=165.9

Q ss_pred             ccCCCCCcEEEEEecCCCchhhHHHHHHHHHhc-------CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEE
Q 015523           11 FISPSFALNVLVPVGFGTEEMEAVIIVDVLRRA-------GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLI   83 (405)
Q Consensus        11 ~~~~~~~~ki~ill~~g~~~~e~~~~~~~l~~~-------~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~l   83 (405)
                      +|.++++++|+|+++|||+.+|+..+.|+|+.+       .|+|++++++++ +|++++|+++.+|..+++.+  +||+|
T Consensus         3 ~~~~~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~~--~~D~l   79 (322)
T PRK09393          3 SMMTMHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELLD--RADTI   79 (322)
T ss_pred             ccccccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCccccC--CCCEE
Confidence            466777889999999999999999999999754       279999999997 99999999999999998764  79999


Q ss_pred             EEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Cc---ccc-CcEE
Q 015523           84 ALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW---AVK-SNIH  158 (405)
Q Consensus        84 iipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~---~~~-~~~v  158 (405)
                      +||||. +.. ...++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++ ++   +.+ ..++
T Consensus        80 ivpGg~-~~~-~~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v  156 (322)
T PRK09393         80 VIPGWR-GPD-APVPEPLLEALRAAHARGARLCSICSG-VFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYV  156 (322)
T ss_pred             EECCCC-ccc-ccCCHHHHHHHHHHHHcCCEEEEEcHH-HHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEE
Confidence            999983 333 346889999999999999999999996 458999999999999999999998876 33   333 3588


Q ss_pred             EeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          159 VSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       159 ~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      .|||++||+|+.+++++++++|++..|.+.++.+++.|+++..+.
T Consensus       157 ~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~~  201 (322)
T PRK09393        157 DEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHRD  201 (322)
T ss_pred             ecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCCC
Confidence            899999999999999999999999999999999999999887665

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.97  E-value=7.8e-30  Score=218.45  Aligned_cols=183  Identities=40%  Similarity=0.652  Sum_probs=172.0

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      ++.+.++..+|.++.|+..+.++|++.|.++++++++++.+++++.|.++.+|..+.|.-..+||++++|||..+...+.
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~   84 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS   84 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence            57888999999999999999999999999999999999989999999999999999887669999999999977888899


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHH-HHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHHH
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVID  376 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~-~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~~  376 (405)
                      +.+.+.+.+++|...|++|++||+|+ .+|+..|++.|+++|+|+..++.+..  .+|.+.++|.|||++|++|+..+++
T Consensus        85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e  164 (247)
T KOG2764|consen   85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE  164 (247)
T ss_pred             hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence            99999999999999999999999999 67777778889999999999999998  7899999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHhhccccc
Q 015523          377 FALAIVSKFFGHARTRSVAEGLVFEY  402 (405)
Q Consensus       377 ~~l~~i~~l~g~~~a~~v~~~l~~~~  402 (405)
                      |++.|++.|.|++.++.+.+.|.+..
T Consensus       165 Fal~lvEqL~GKeka~~v~~~l~l~~  190 (247)
T KOG2764|consen  165 FALKLVEQLGGKEKANEVKKPLSLLF  190 (247)
T ss_pred             HHHHHHHHhcCchhhhhhhccceeec
Confidence            99999999999999999999887654

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=5.5e-29  Score=217.79  Aligned_cols=163  Identities=21%  Similarity=0.383  Sum_probs=146.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCc--eeec-------------CCCcEEeeCCCccCcCCCCccEE
Q 015523          222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST--QIVA-------------SQGVKIIADKSISDAAESVYDLI  286 (405)
Q Consensus       222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~--~v~~-------------~~g~~v~~~~~l~~~~~~~~D~l  286 (405)
                      ||+|+++||+++.|+..+++.|.++|++++++|++++.  ++++             ..|..+.++..+++..+.+||+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            68999999999999999999999999999999999861  2333             36899999999999866789999


Q ss_pred             EEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCC
Q 015523          287 ILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGK  364 (405)
Q Consensus       287 ivpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~  364 (405)
                      +||||. ....+..++.+.+||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++  ..+.++.++.|||
T Consensus        81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~  159 (180)
T cd03169          81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGN  159 (180)
T ss_pred             EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECC
Confidence            999996 4444567889999999999999999999999999999999999999999999988886  3467788999999


Q ss_pred             eEecCChhhHHHHHHHHHHHc
Q 015523          365 VITSRGLANVIDFALAIVSKF  385 (405)
Q Consensus       365 iiTa~g~~~~~~~~l~~i~~l  385 (405)
                      +|||+|+.++.+|+.++++.|
T Consensus       160 iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         160 LVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             EEEecCCchHHHHHHHHHHhC
Confidence            999999999999999999865

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.96  E-value=1.8e-29  Score=218.06  Aligned_cols=154  Identities=29%  Similarity=0.384  Sum_probs=134.2

Q ss_pred             EecCCCchhhHHHHHHHHHhcC-------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           23 PVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        23 ll~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      |+||||+..|+..+.|+|+.++       |++++++++++ ++++++|+.+.++..+++.+  ++|+|+||||. .....
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~~--~~D~lvvpg~~-~~~~~   76 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDAP--DFDILVVPGGP-GFDAA   76 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCCS--CCSEEEEE-ST-THHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhcc--cCCEEEeCCCC-Cchhc
Confidence            6899999999999999999887       99999999998 99999999999999999854  79999999995 34556


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Ccc---c-cCcEEEeCCeEcCCCcc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWA---V-KSNIHVSGEVTTSRGPG  170 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~---~-~~~~v~dg~iiT~~g~~  170 (405)
                      ..++.+++||+++++++++|+++|+| +++|+++|+|+|+++|+||...+.|++ ++.   . ++.+|.|||++||+|+.
T Consensus        77 ~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~  155 (166)
T PF13278_consen   77 AKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPT  155 (166)
T ss_dssp             TT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCC
T ss_pred             ccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHH
Confidence            67899999999999999999999995 678999999999999999999999998 443   3 67899999999999999


Q ss_pred             cHHHHHHHHHH
Q 015523          171 TSFEFALCLVE  181 (405)
Q Consensus       171 ~~~~~~l~ii~  181 (405)
                      +++|+++++||
T Consensus       156 ~~~dl~l~li~  166 (166)
T PF13278_consen  156 AAIDLALYLIE  166 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999999996

...

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=7.1e-29  Score=214.96  Aligned_cols=160  Identities=24%  Similarity=0.405  Sum_probs=142.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhC-CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS  301 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~  301 (405)
                      |+|+++|||++.|+..+++.|++. +|++++++++++ +++++.|+.+.++..+++.++.+||+|+||||.. .. ...+
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~-~~-~~~~   77 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDS-WD-NPEA   77 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCcc-cc-cCCc
Confidence            589999999999999999999997 799999999998 9999999999999999987667899999999963 22 2478


Q ss_pred             hHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcc-hhhhhhc-----CcccCCcEEEcCCeEecCChhhHH
Q 015523          302 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPS-VIGKLTN-----EVVNGTKVVVDGKVITSRGLANVI  375 (405)
Q Consensus       302 ~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~-~~~~l~~-----~~~~~~~~v~dg~iiTa~g~~~~~  375 (405)
                      +.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||. ..+.++.     ..+.++.+|.|||+|||+|.. +.
T Consensus        78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~~  156 (170)
T cd03140          78 PDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-PV  156 (170)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-HH
Confidence            8999999999999999999999999999999999999999985 4555543     356789999999999998765 69


Q ss_pred             HHHHHHHHHcc
Q 015523          376 DFALAIVSKFF  386 (405)
Q Consensus       376 ~~~l~~i~~l~  386 (405)
                      +|++++++++.
T Consensus       157 d~al~~i~~l~  167 (170)
T cd03140         157 EFAAEILRALD  167 (170)
T ss_pred             HHHHHHHHHcC
Confidence            99999999863

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=1.1e-28  Score=215.78  Aligned_cols=163  Identities=22%  Similarity=0.321  Sum_probs=144.0

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCc--eeEe-------------ccCcEEecCcccCCCCCCcccEE
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL--EVEA-------------SSGTRLVADTSISNCSHQVFDLI   83 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~--~v~~-------------~~g~~v~~~~~~~~~~~~~~d~l   83 (405)
                      ||+|+++|||+..|+..++++|+++|++++++|++++.  ++++             ..|..+.++.++++.++.+||+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            69999999999999999999999999999999999861  2333             36889999999998876789999


Q ss_pred             EEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeC
Q 015523           84 ALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSG  161 (405)
Q Consensus        84 iipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg  161 (405)
                      +||||. ....+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++  ..+.+++++.||
T Consensus        81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~  158 (180)
T cd03169          81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDG  158 (180)
T ss_pred             EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEEC
Confidence            999994 44445567899999999999999999999965 58999999999999999998888887  346677899999


Q ss_pred             CeEcCCCcccHHHHHHHHHHHh
Q 015523          162 EVTTSRGPGTSFEFALCLVEQL  183 (405)
Q Consensus       162 ~iiT~~g~~~~~~~~l~ii~~~  183 (405)
                      |+|||+|+.++.+|+.++++.+
T Consensus       159 ~iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         159 NLVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             CEEEecCCchHHHHHHHHHHhC
Confidence            9999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=3.9e-28  Score=210.36  Aligned_cols=160  Identities=23%  Similarity=0.308  Sum_probs=140.2

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhc-CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccC
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC   98 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~   98 (405)
                      |+++++|+|++.|+..+.++|+++ +|++++++++++ ++++++|+.+.++..+++.++.+||+++||||. ... ...+
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~-~~~~   77 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWD-NPEA   77 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCc-ccc-cCCc
Confidence            589999999999999999999997 899999999998 999999999999999998765689999999994 322 3467


Q ss_pred             hHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccC-ccccCCC-----CccccCcEEEeCCeEcCCCcccH
Q 015523           99 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPA-FTDKLPT-----FWAVKSNIHVSGEVTTSRGPGTS  172 (405)
Q Consensus        99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~-~~~~l~~-----~~~~~~~~v~dg~iiT~~g~~~~  172 (405)
                      +.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||. ..+.+++     ..+.++.+++|||+|||+| .++
T Consensus        78 ~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g-~a~  155 (170)
T cd03140          78 PDLAGLVRQALKQGKPVAAICGA-TLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANG-TAP  155 (170)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChH-HHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCC-cCH
Confidence            89999999999999999999996 55899999999999999985 5555553     3456788999999999987 558


Q ss_pred             HHHHHHHHHHhc
Q 015523          173 FEFALCLVEQLF  184 (405)
Q Consensus       173 ~~~~l~ii~~~~  184 (405)
                      .||++++|+++.
T Consensus       156 ~d~al~~i~~l~  167 (170)
T cd03140         156 VEFAAEILRALD  167 (170)
T ss_pred             HHHHHHHHHHcC
Confidence            999999999863

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.94  E-value=8e-27  Score=210.03  Aligned_cols=157  Identities=20%  Similarity=0.230  Sum_probs=134.8

Q ss_pred             CCCcHHHHHHHHHHHHhCCCeEEEEeecCCcee---------------------ecCCCcEEeeCCCccCcCCCCccEEE
Q 015523          229 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQI---------------------VASQGVKIIADKSISDAAESVYDLII  287 (405)
Q Consensus       229 ~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v---------------------~~~~g~~v~~~~~l~~~~~~~~D~li  287 (405)
                      .|+++.|+..|++.|+++|++|+++|++++.++                     .++.+.++.++..+++++..+||+|+
T Consensus        20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~   99 (231)
T cd03147          20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF   99 (231)
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence            689999999999999999999999999874111                     12344567788899999899999999


Q ss_pred             EcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc-------CCCCCCeeecCcchh--------------
Q 015523          288 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-------GLLKAKKATAHPSVI--------------  346 (405)
Q Consensus       288 vpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a-------GlL~g~~~t~~~~~~--------------  346 (405)
                      +|||++.+..+.+++.++++|++|++++|+|++||+|+.+|+.+       ++++||++|+++..+              
T Consensus       100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~  179 (231)
T cd03147         100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN  179 (231)
T ss_pred             ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence            99998777889999999999999999999999999999999987       899999999998754              


Q ss_pred             -----hhhhc--Cccc------CCcEEEcCCeEecCChhhHHHHHHHHHHHc
Q 015523          347 -----GKLTN--EVVN------GTKVVVDGKVITSRGLANVIDFALAIVSKF  385 (405)
Q Consensus       347 -----~~l~~--~~~~------~~~~v~dg~iiTa~g~~~~~~~~l~~i~~l  385 (405)
                           +.+++  +.+.      +..+|+|||+||++++.++.+|++.+++.|
T Consensus       180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                 23332  3444      345899999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.94  E-value=2.5e-26  Score=206.80  Aligned_cols=156  Identities=28%  Similarity=0.339  Sum_probs=135.1

Q ss_pred             CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeec--------------------CCCcEEeeCCCccCcCCCCccEEEE
Q 015523          229 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA--------------------SQGVKIIADKSISDAAESVYDLIIL  288 (405)
Q Consensus       229 ~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~--------------------~~g~~v~~~~~l~~~~~~~~D~liv  288 (405)
                      +||++.|+..|+++|.++|++|+++|++++ ++..                    ..|..+.++..++++++.+||+|+|
T Consensus        18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~i   96 (221)
T cd03141          18 TGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFI   96 (221)
T ss_pred             CccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEE
Confidence            799999999999999999999999999886 4221                    2345588999999998889999999


Q ss_pred             cCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC------CCCCCeeecCcchhhh--------------
Q 015523          289 PGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKAKKATAHPSVIGK--------------  348 (405)
Q Consensus       289 pgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG------lL~g~~~t~~~~~~~~--------------  348 (405)
                      |||......+..++.+++||+++++++|+|++||+|+++|+++|      +|+||++|+||...+.              
T Consensus        97 pGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~  176 (221)
T cd03141          97 PGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLED  176 (221)
T ss_pred             CCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHH
Confidence            99975456678899999999999999999999999999999999      7999999999876554              


Q ss_pred             -hhc--CcccC-----CcEEEcCCeEecCChhhHHHHHHHHHHHc
Q 015523          349 -LTN--EVVNG-----TKVVVDGKVITSRGLANVIDFALAIVSKF  385 (405)
Q Consensus       349 -l~~--~~~~~-----~~~v~dg~iiTa~g~~~~~~~~l~~i~~l  385 (405)
                       +++  ..+.+     ..+|+|+|+||++++.++.+|++++++.+
T Consensus       177 ~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         177 ELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence             333  23443     55999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK04155 chaperone protein HchA; Provisional

Probab=99.94  E-value=1.3e-25  Score=207.31  Aligned_cols=166  Identities=19%  Similarity=0.256  Sum_probs=137.0

Q ss_pred             cCEEEEEeC--------------CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecC-----------------CCcE
Q 015523          220 MPRVLIPIA--------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS-----------------QGVK  268 (405)
Q Consensus       220 ~~~V~il~~--------------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~-----------------~g~~  268 (405)
                      .+||+|++.              .|+++.|+..|++.|+++||+|+++|++++ ++...                 .+..
T Consensus        49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~  127 (287)
T PRK04155         49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK  127 (287)
T ss_pred             CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence            358888875              689999999999999999999999999986 54321                 1222


Q ss_pred             EeeCCCccCc----C--CCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC------CCCC
Q 015523          269 IIADKSISDA----A--ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKA  336 (405)
Q Consensus       269 v~~~~~l~~~----~--~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG------lL~g  336 (405)
                      +..+..++++    .  +.+||+|+||||++.+..+++++.++++|+++++++|+|++||+|+.+|..+|      +++|
T Consensus       128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~G  207 (287)
T PRK04155        128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNG  207 (287)
T ss_pred             ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCC
Confidence            3333334333    2  67999999999997788899999999999999999999999999999999999      9999


Q ss_pred             CeeecCcchh-------------------hhhhc--CcccC----CcEEEcCCeEecCChhhHHHHHHHHHHHcc
Q 015523          337 KKATAHPSVI-------------------GKLTN--EVVNG----TKVVVDGKVITSRGLANVIDFALAIVSKFF  386 (405)
Q Consensus       337 ~~~t~~~~~~-------------------~~l~~--~~~~~----~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~  386 (405)
                      |++|+++...                   +.|++  ..+.+    ..+|+|||+||++++.++.+|++.+++.|.
T Consensus       208 kkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll  282 (287)
T PRK04155        208 YSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL  282 (287)
T ss_pred             CEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence            9999988663                   34443  24444    589999999999999999999999999875

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.93  E-value=3.6e-25  Score=195.07  Aligned_cols=170  Identities=34%  Similarity=0.558  Sum_probs=152.1

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCC-ceeecCCC-cEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS-TQIVASQG-VKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~-~~v~~~~g-~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      ++++++++++||.+.|+..|+++|+++++.++++++.++ ..+.+..| ..+.++..++++++.+||++++|||..+...
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~   81 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY   81 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence            579999999999999999999999999999999999984 35555554 7777788999987779999999999446666


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC-CCCCCeeecCcchhhhhhc------CcccCC-----cEEEcCC-
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKAKKATAHPSVIGKLTN------EVVNGT-----KVVVDGK-  364 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG-lL~g~~~t~~~~~~~~l~~------~~~~~~-----~~v~dg~-  364 (405)
                      +..++.+++++++++.++|+|++||+|+.+|+.+| +++|+++|+++...+....      ..+.+.     .+|.||+ 
T Consensus        82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~  161 (188)
T COG0693          82 LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNA  161 (188)
T ss_pred             ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCe
Confidence            77779999999999999999999999999999999 9999999999988887766      577777     9999999 


Q ss_pred             eEecCChhhHHHHHHHHHHHccCHH
Q 015523          365 VITSRGLANVIDFALAIVSKFFGHA  389 (405)
Q Consensus       365 iiTa~g~~~~~~~~l~~i~~l~g~~  389 (405)
                      ++|+.++.++.+|+..+++++.+..
T Consensus       162 lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         162 LVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             EEEcCCcccHHHHHHHHHHHHhccc
Confidence            9999999999999999999998754

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.93  E-value=4e-25  Score=199.15  Aligned_cols=159  Identities=16%  Similarity=0.225  Sum_probs=135.9

Q ss_pred             eCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeec-----------------CCCcEEeeCCCccCc------CCCCc
Q 015523          227 IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA-----------------SQGVKIIADKSISDA------AESVY  283 (405)
Q Consensus       227 ~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~-----------------~~g~~v~~~~~l~~~------~~~~~  283 (405)
                      +.+||++.|+..|+++|+++|++++++|++++ .+..                 ..+..+..+..++++      ++.+|
T Consensus        19 ~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dY   97 (232)
T cd03148          19 FSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEY   97 (232)
T ss_pred             cCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhc
Confidence            46899999999999999999999999999886 4321                 134457778888887      45799


Q ss_pred             cEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCC------CCCCeeecCcchhhhhh-------
Q 015523          284 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGL------LKAKKATAHPSVIGKLT-------  350 (405)
Q Consensus       284 D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGl------L~g~~~t~~~~~~~~l~-------  350 (405)
                      |+|++|||++.+..++.++.+.+++++++++||+|++||||+.+|..+++      ++||++|+++..++...       
T Consensus        98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~  177 (232)
T cd03148          98 AAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYM  177 (232)
T ss_pred             eEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccc
Confidence            99999999988889999999999999999999999999999999999998      99999999988766432       


Q ss_pred             -------------c--Cccc----CCcEEEcCCeEecCChhhHHHHHHHHHHHcc
Q 015523          351 -------------N--EVVN----GTKVVVDGKVITSRGLANVIDFALAIVSKFF  386 (405)
Q Consensus       351 -------------~--~~~~----~~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~  386 (405)
                                   +  +.+.    ...+|+||++||+++|.++..++.++++.++
T Consensus       178 ~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~  232 (232)
T cd03148         178 PGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML  232 (232)
T ss_pred             cCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence                         1  1122    3378999999999999999999999998763

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.93  E-value=5.3e-25  Score=185.94  Aligned_cols=137  Identities=42%  Similarity=0.616  Sum_probs=122.5

Q ss_pred             eEEEEeecCCceeecCCC---cEEeeCCCccCcCCCCccEEEEcCCccchHhhhcC-hHHHHHHHHHhhcCCEEEEEchH
Q 015523          249 DVVVASVERSTQIVASQG---VKIIADKSISDAAESVYDLIILPGGVAGAERLQKS-RILKKLLKEQKVAGRIYGAVCSS  324 (405)
Q Consensus       249 ~v~~vs~~~~~~v~~~~g---~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~-~~l~~~l~~~~~~~k~i~aic~g  324 (405)
                      +|+++++..++.++++.|   .++.++..++++++.+||+|++|||+.....++.+ +.++++|+++++++|+|++||+|
T Consensus         1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g   80 (147)
T PF01965_consen    1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG   80 (147)
T ss_dssp             EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred             CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence            588999988778999999   99999999999999999999999998667888755 99999999999999999999999


Q ss_pred             HHHHHHcCCCCCCeeecCcchhhhhhc--CcccC--CcEEEcC-CeEecCChhhHHHHHHHHHHHc
Q 015523          325 PIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG--TKVVVDG-KVITSRGLANVIDFALAIVSKF  385 (405)
Q Consensus       325 ~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~--~~~v~dg-~iiTa~g~~~~~~~~l~~i~~l  385 (405)
                      +.+|+++|+|+|+++|+++...+.++.  ..+.+  ..+++|| |+||++++.++.+|++++++.|
T Consensus        81 ~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L  146 (147)
T PF01965_consen   81 PAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL  146 (147)
T ss_dssp             HHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             cchhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence            999999999999999999998886665  44544  8899999 9999999999999999999986

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.92  E-value=3.8e-25  Score=199.18  Aligned_cols=157  Identities=19%  Similarity=0.229  Sum_probs=131.3

Q ss_pred             CCCchhhHHHHHHHHHhcCCEEEEEecCCCcee---------------------EeccCcEEecCcccCCCCCCcccEEE
Q 015523           26 FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEV---------------------EASSGTRLVADTSISNCSHQVFDLIA   84 (405)
Q Consensus        26 ~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v---------------------~~~~g~~v~~~~~~~~~~~~~~d~li   84 (405)
                      -|+...|+..|+++|+++|++|+++|+.++.++                     .++.+..+..+..+++++..+||+|+
T Consensus        20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~   99 (231)
T cd03147          20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF   99 (231)
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence            688999999999999999999999999764111                     12344566778888998888999999


Q ss_pred             EcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc-------CCCCCcceeeccCcc-------------
Q 015523           85 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-------GLLRRKQITCHPAFT-------------  144 (405)
Q Consensus        85 ipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a-------gll~g~~~t~~~~~~-------------  144 (405)
                      ||||+..+..+.+++.+.++|+++++++|+|++||+|++ +|+.+       ++++||++|+|+...             
T Consensus       100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~  178 (231)
T cd03147         100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKR  178 (231)
T ss_pred             ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhccc
Confidence            999976667899999999999999999999999999987 67766       899999999998653             


Q ss_pred             ------ccCCC--Ccccc------CcEEEeCCeEcCCCcccHHHHHHHHHHHh
Q 015523          145 ------DKLPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQL  183 (405)
Q Consensus       145 ------~~l~~--~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~ii~~~  183 (405)
                            +.+++  ..+.+      +.+|+|||+||++++.++.+|++.+++++
T Consensus       179 ~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         179 NLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                  22332  34443      34999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.92  E-value=5.1e-25  Score=198.25  Aligned_cols=157  Identities=26%  Similarity=0.307  Sum_probs=132.2

Q ss_pred             cCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEe--------------------ccCcEEecCcccCCCCCCcccEEE
Q 015523           25 GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA--------------------SSGTRLVADTSISNCSHQVFDLIA   84 (405)
Q Consensus        25 ~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~--------------------~~g~~v~~~~~~~~~~~~~~d~li   84 (405)
                      .+||.+.|+..|+++|+++|++|++++++++ ++..                    ..+..+.++..+++++..+||+|+
T Consensus        17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~   95 (221)
T cd03141          17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIF   95 (221)
T ss_pred             cCccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEE
Confidence            4799999999999999999999999999886 4221                    234457888999999888999999


Q ss_pred             EcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC------CCCCcceeeccCcccc------------
Q 015523           85 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLRRKQITCHPAFTDK------------  146 (405)
Q Consensus        85 ipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag------ll~g~~~t~~~~~~~~------------  146 (405)
                      ||||+.....+..++.+++||+++++++++|++||+|+. +|+++|      +|+|+++|+||...+.            
T Consensus        96 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~-~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~  174 (221)
T cd03141          96 IPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPA-ALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLL  174 (221)
T ss_pred             ECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHH-HHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCH
Confidence            999953345677899999999999999999999999765 799999      7999999999976544            


Q ss_pred             ---CCC--Ccccc-----CcEEEeCCeEcCCCcccHHHHHHHHHHHh
Q 015523          147 ---LPT--FWAVK-----SNIHVSGEVTTSRGPGTSFEFALCLVEQL  183 (405)
Q Consensus       147 ---l~~--~~~~~-----~~~v~dg~iiT~~g~~~~~~~~l~ii~~~  183 (405)
                         +++  ..+.+     ..+|+|+|+||++|+.++.+|++.+|+.+
T Consensus       175 ~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         175 EDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence               333  33443     45999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK04155 chaperone protein HchA; Provisional

Probab=99.91  E-value=4.1e-24  Score=197.41  Aligned_cols=166  Identities=18%  Similarity=0.295  Sum_probs=133.6

Q ss_pred             CcEEEEEec--------------CCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEec-----------------cCcE
Q 015523           17 ALNVLVPVG--------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS-----------------SGTR   65 (405)
Q Consensus        17 ~~ki~ill~--------------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~-----------------~g~~   65 (405)
                      .+||+|++.              .|+...|+..|+++|+++|++|+++|++++ ++...                 .+..
T Consensus        49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~  127 (287)
T PRK04155         49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK  127 (287)
T ss_pred             CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence            458998885              478899999999999999999999999886 54321                 1122


Q ss_pred             EecCcccCCC----C--CCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC------CCC
Q 015523           66 LVADTSISNC----S--HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLR  133 (405)
Q Consensus        66 v~~~~~~~~~----~--~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag------ll~  133 (405)
                      +..+..++++    .  ..+||+|+||||+.....+.+++.+.++|+++++++|+|++||+|++ +|..+|      +++
T Consensus       128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~  206 (287)
T PRK04155        128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLN  206 (287)
T ss_pred             ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccC
Confidence            2322223222    2  56899999999986678899999999999999999999999999987 577788      999


Q ss_pred             CcceeeccCcc-------------------ccCCC--Ccccc----CcEEEeCCeEcCCCcccHHHHHHHHHHHhc
Q 015523          134 RKQITCHPAFT-------------------DKLPT--FWAVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQLF  184 (405)
Q Consensus       134 g~~~t~~~~~~-------------------~~l~~--~~~~~----~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~  184 (405)
                      |+++|+++...                   +.|++  ..+++    ..+|+|||+||++|+.++.+|++.+++.+.
T Consensus       207 GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll  282 (287)
T PRK04155        207 GYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL  282 (287)
T ss_pred             CCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence            99999988652                   33443  45555    579999999999999999999999999875

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.91  E-value=1.2e-23  Score=185.29  Aligned_cols=170  Identities=28%  Similarity=0.427  Sum_probs=149.9

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCC-ceeEeccC-cEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ-LEVEASSG-TRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~-~~v~~~~g-~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      ++||++++++||...|+..|+++|+++++.++++++.++ ..+.+..| ..+.++..++++++.+||++++|||..++..
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~   81 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY   81 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence            578999999999999999999999999999999999984 35666555 6777878888888779999999999545666


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC-CCCCcceeeccCccccCCC------CccccC-----cEEEeCC
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-LLRRKQITCHPAFTDKLPT------FWAVKS-----NIHVSGE  162 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag-ll~g~~~t~~~~~~~~l~~------~~~~~~-----~~v~dg~  162 (405)
                      ...++.++++++++++++|+|++||+|++ +|+.+| +++|+++|+++...+....      ..+++.     .++.||+
T Consensus        82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~  160 (188)
T COG0693          82 LRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGN  160 (188)
T ss_pred             ccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECC
Confidence            67779999999999999999999999877 799999 9999999999887776554      677777     8999999


Q ss_pred             -eEcCCCcccHHHHHHHHHHHhcChH
Q 015523          163 -VTTSRGPGTSFEFALCLVEQLFGES  187 (405)
Q Consensus       163 -iiT~~g~~~~~~~~l~ii~~~~g~~  187 (405)
                       ++|+.++.++.+++..+++++.+..
T Consensus       161 ~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         161 ALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             eEEEcCCcccHHHHHHHHHHHHhccc
Confidence             9999999999999999999987754

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.91  E-value=4.6e-24  Score=180.26  Aligned_cols=137  Identities=33%  Similarity=0.502  Sum_probs=121.0

Q ss_pred             EEEEEecCCCceeEeccC---cEEecCcccCCCCCCcccEEEEcCCchhhhccccC-hHHHHHHHHHHHcCCEEEEEccc
Q 015523           46 QVTMASVEPQLEVEASSG---TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC-EILKKITSKQAEEKRLYGAICAA  121 (405)
Q Consensus        46 ~v~~vs~~~~~~v~~~~g---~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~-~~~~~~l~~~~~~~~~i~aic~g  121 (405)
                      +|+++++..++++++++|   .++.+|..++++++.+||+|++|||+.....+..+ +.++++++++++++|+|++||+|
T Consensus         1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g   80 (147)
T PF01965_consen    1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG   80 (147)
T ss_dssp             EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred             CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence            589999998878999999   99999999999999999999999996557778745 99999999999999999999998


Q ss_pred             hHHhhhhcCCCCCcceeeccCccccCCC--Ccccc--CcEEEeC-CeEcCCCcccHHHHHHHHHHHh
Q 015523          122 PAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVK--SNIHVSG-EVTTSRGPGTSFEFALCLVEQL  183 (405)
Q Consensus       122 ~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~--~~~v~dg-~iiT~~g~~~~~~~~l~ii~~~  183 (405)
                      +. +|+++|+|+|+++|+++...+.++.  ..+.+  ..+++|+ |+||+.|+.++.+|++.+++.+
T Consensus        81 ~~-~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L  146 (147)
T PF01965_consen   81 PA-VLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL  146 (147)
T ss_dssp             HH-HHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             cc-hhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence            75 7999999999999999998875554  56666  7799999 9999999999999999999986

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.90  E-value=1.3e-22  Score=180.70  Aligned_cols=150  Identities=24%  Similarity=0.345  Sum_probs=123.5

Q ss_pred             cCEEEEEeC-----CCCcHHHHHHHHHHHHhCCCeEEEEeecCCc----------eeecCCCcEEeeC-------CCccC
Q 015523          220 MPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSISD  277 (405)
Q Consensus       220 ~~~V~il~~-----~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~----------~v~~~~g~~v~~~-------~~l~~  277 (405)
                      |+||+|++.     +||++.|+..|++.|+++|++++++|++++.          ++....++.+..+       ..+++
T Consensus         1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (217)
T PRK11780          1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE   80 (217)
T ss_pred             CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence            468999998     9999999999999999999999999998751          1223344445443       57888


Q ss_pred             cCCCCccEEEEcCCccchHh----------hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecC--cch
Q 015523          278 AAESVYDLIILPGGVAGAER----------LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH--PSV  345 (405)
Q Consensus       278 ~~~~~~D~livpgG~~~~~~----------~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~--~~~  345 (405)
                      +++.+||+|++|||++.+..          ++.++.+++++++|+++||+|++||+|+++|+.+.. +||++|++  +..
T Consensus        81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~~~~~  159 (217)
T PRK11780         81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGNDEDT  159 (217)
T ss_pred             CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecCChhh
Confidence            88899999999999865433          355899999999999999999999999999998632 89999999  888


Q ss_pred             hhhhhc--CcccCC---cEEEc--CCeEecCC
Q 015523          346 IGKLTN--EVVNGT---KVVVD--GKVITSRG  370 (405)
Q Consensus       346 ~~~l~~--~~~~~~---~~v~d--g~iiTa~g  370 (405)
                      +..+++  +.+.+.   .+|+|  ||+||+..
T Consensus       160 ~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~  191 (217)
T PRK11780        160 AAAIEKMGGEHVDCPVDDIVVDEENKVVTTPA  191 (217)
T ss_pred             HHHHHHCCCEEEcCCCCeEEEECCCCEEeCCc
Confidence            888886  455554   67887  78999985

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.90  E-value=1.9e-23  Score=188.26  Aligned_cols=160  Identities=14%  Similarity=0.235  Sum_probs=132.6

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEe-----------------ccCcEEecCcccCCC------CCC
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA-----------------SSGTRLVADTSISNC------SHQ   78 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~-----------------~~g~~v~~~~~~~~~------~~~   78 (405)
                      -.+..||.+.|+..|+++|+++|++++++|++++ .+..                 ..+..+..+..++++      +..
T Consensus        17 ~~~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~   95 (232)
T cd03148          17 KLFSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDS   95 (232)
T ss_pred             CCcCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChh
Confidence            3446899999999999999999999999999886 4331                 234446777777776      346


Q ss_pred             cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCC------CCCcceeeccCccccCC----
Q 015523           79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL------LRRKQITCHPAFTDKLP----  148 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agl------l~g~~~t~~~~~~~~l~----  148 (405)
                      +||+|++|||+..+..++.++.+.++++++++++|+|++||+|++ +|..+++      ++||++|+++...+...    
T Consensus        96 dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~  174 (232)
T cd03148          96 EYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEI  174 (232)
T ss_pred             hceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhcc
Confidence            899999999987778899999999999999999999999999987 5777888      99999999988655321    


Q ss_pred             ----C--------------Ccccc----CcEEEeCCeEcCCCcccHHHHHHHHHHHh
Q 015523          149 ----T--------------FWAVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQL  183 (405)
Q Consensus       149 ----~--------------~~~~~----~~~v~dg~iiT~~g~~~~~~~~l~ii~~~  183 (405)
                          +              ..+..    ..+|+||++||++++.++..++..+|+.+
T Consensus       175 ~~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~  231 (232)
T cd03148         175 GYMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM  231 (232)
T ss_pred             ccccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence                1              22222    36999999999999999999999999876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.88  E-value=4.7e-22  Score=175.80  Aligned_cols=153  Identities=24%  Similarity=0.325  Sum_probs=121.7

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCeEEEEeecCCc----------eeecCCCcEEeeC-------CCccCcCCCCccEEEEcC
Q 015523          228 ANGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSISDAAESVYDLIILPG  290 (405)
Q Consensus       228 ~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~----------~v~~~~g~~v~~~-------~~l~~~~~~~~D~livpg  290 (405)
                      +|||++.|+..|+++|+++|++++++|++++.          .+....++.+.++       ..++++++.+||+|++||
T Consensus        11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG   90 (213)
T cd03133          11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG   90 (213)
T ss_pred             CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence            68999999999999999999999999997651          2333456666655       678888888999999999


Q ss_pred             CccchHhh----------hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCc--chhhhhhc--CcccC
Q 015523          291 GVAGAERL----------QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHP--SVIGKLTN--EVVNG  356 (405)
Q Consensus       291 G~~~~~~~----------~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~--~~~~~l~~--~~~~~  356 (405)
                      |+..+..+          +.++.+++++++|++++|+|++||+|+.+|+.++. +||++|+++  ..++.+++  ..+.+
T Consensus        91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d  169 (213)
T cd03133          91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVN  169 (213)
T ss_pred             CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEe
Confidence            98544443          34889999999999999999999999999999766 999999999  77888875  45543


Q ss_pred             ---CcEEEc--CCeEecCCh---hhHHHHHHHH
Q 015523          357 ---TKVVVD--GKVITSRGL---ANVIDFALAI  381 (405)
Q Consensus       357 ---~~~v~d--g~iiTa~g~---~~~~~~~l~~  381 (405)
                         ..+|+|  ||+|||+..   .+..+.++.+
T Consensus       170 ~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~~  202 (213)
T cd03133         170 CPVEEIVVDEKNKVVTTPAYMLADSIHEIADGI  202 (213)
T ss_pred             CCCCeEEEECCCCEEeCccccCCCCHHHHHHhH
Confidence               355665  799999854   3444544443

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.87  E-value=2.9e-21  Score=162.29  Aligned_cols=113  Identities=25%  Similarity=0.367  Sum_probs=105.8

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      +||+|+++|||.+.|+..+.+.|+.+|++++++|++++ +++++.|.++.++..+++.++.+||+++||||......+..
T Consensus         2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~   80 (142)
T cd03132           2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAP   80 (142)
T ss_pred             CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHcc
Confidence            68999999999999999999999999999999999998 99999999999999999986678999999999754455578


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCC
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLL  334 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL  334 (405)
                      ++.+++||+++++++|+|+++|+|+++|+++|+|
T Consensus        81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll  114 (142)
T cd03132          81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP  114 (142)
T ss_pred             ChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence            8999999999999999999999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.87  E-value=8.9e-22  Score=175.30  Aligned_cols=153  Identities=20%  Similarity=0.205  Sum_probs=123.0

Q ss_pred             CcEEEEEec-----CCCchhhHHHHHHHHHhcCCEEEEEecCCCc----------eeEeccCcEEecC-------cccCC
Q 015523           17 ALNVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----------EVEASSGTRLVAD-------TSISN   74 (405)
Q Consensus        17 ~~ki~ill~-----~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~----------~v~~~~g~~v~~~-------~~~~~   74 (405)
                      |+||+|++.     +||++.|+..|+++|+++|++++++|++++.          ++....++.+.++       ..+++
T Consensus         1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (217)
T PRK11780          1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE   80 (217)
T ss_pred             CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence            368999997     9999999999999999999999999998751          1233344444443       56778


Q ss_pred             CCCCcccEEEEcCCchhhh----------ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeec--cC
Q 015523           75 CSHQVFDLIALPGGMPGSV----------RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCH--PA  142 (405)
Q Consensus        75 ~~~~~~d~liipgg~~~~~----------~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~--~~  142 (405)
                      +++.+||+|++|||+....          .++.++.+.++++++++++|+|++||+|++ +|+.+.. +|+++|++  +.
T Consensus        81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~~T~~~~~~  158 (217)
T PRK11780         81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVKLTIGNDED  158 (217)
T ss_pred             CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcEEEecCChh
Confidence            8778999999999964332          235589999999999999999999999987 5776522 89999999  88


Q ss_pred             ccccCCC--CccccC---cEEEe--CCeEcCCCccc
Q 015523          143 FTDKLPT--FWAVKS---NIHVS--GEVTTSRGPGT  171 (405)
Q Consensus       143 ~~~~l~~--~~~~~~---~~v~d--g~iiT~~g~~~  171 (405)
                      ....+++  ..|++.   .+|+|  +|+|||..-+.
T Consensus       159 ~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~~  194 (217)
T PRK11780        159 TAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYML  194 (217)
T ss_pred             hHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCcccC
Confidence            8888887  777775   67888  68999986443

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.85  E-value=1.6e-20  Score=157.84  Aligned_cols=114  Identities=21%  Similarity=0.278  Sum_probs=103.7

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      ++||+|+++|||+..|+..+.++|+.++++++++|++++ ++++++|..+.++.++++.+..+||+++||||......+.
T Consensus         1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~   79 (142)
T cd03132           1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALA   79 (142)
T ss_pred             CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHc
Confidence            368999999999999999999999999999999999998 9999999999999999988766899999999953344456


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCC
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL  132 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll  132 (405)
                      .++.+.+||+++++++++|+++|+| .++|+++|+|
T Consensus        80 ~~~~l~~~l~~~~~~~~~I~aic~G-~~~La~aGll  114 (142)
T cd03132          80 PSGRALHFVTEAFKHGKPIGAVGEG-SDLLEAAGIP  114 (142)
T ss_pred             cChHHHHHHHHHHhcCCeEEEcCch-HHHHHHcCCC
Confidence            7899999999999999999999996 5589999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.85  E-value=3.7e-21  Score=170.12  Aligned_cols=152  Identities=22%  Similarity=0.206  Sum_probs=119.5

Q ss_pred             cCCCchhhHHHHHHHHHhcCCEEEEEecCCCc----------eeEeccCcEEecC-------cccCCCCCCcccEEEEcC
Q 015523           25 GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----------EVEASSGTRLVAD-------TSISNCSHQVFDLIALPG   87 (405)
Q Consensus        25 ~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~----------~v~~~~g~~v~~~-------~~~~~~~~~~~d~liipg   87 (405)
                      +|||++.|+..|+++|+++|++++++|++++.          .+..+.++.+.++       ..+++++..+||+|++||
T Consensus        11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG   90 (213)
T cd03133          11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG   90 (213)
T ss_pred             CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence            78999999999999999999999999997641          2333456666655       677787777899999999


Q ss_pred             Cchhhhcc----------ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeecc--CccccCCC--Cccc
Q 015523           88 GMPGSVRL----------RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHP--AFTDKLPT--FWAV  153 (405)
Q Consensus        88 g~~~~~~~----------~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~--~~~~~l~~--~~~~  153 (405)
                      |+.....+          +.++.++++++++++++|+|++||+|++ +|++++. +||++|+|+  ...+.+++  ..|.
T Consensus        91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~  168 (213)
T cd03133          91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHV  168 (213)
T ss_pred             CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEE
Confidence            96433333          3478999999999999999999999987 5777655 999999999  77888876  6666


Q ss_pred             c---CcEEEe--CCeEcCCCccc---HHHHHHH
Q 015523          154 K---SNIHVS--GEVTTSRGPGT---SFEFALC  178 (405)
Q Consensus       154 ~---~~~v~d--g~iiT~~g~~~---~~~~~l~  178 (405)
                      +   ..+++|  ||+|||.....   .++.++.
T Consensus       169 d~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~  201 (213)
T cd03133         169 NCPVEEIVVDEKNKVVTTPAYMLADSIHEIADG  201 (213)
T ss_pred             eCCCCeEEEECCCCEEeCccccCCCCHHHHHHh
Confidence            4   356666  78999987643   3444444

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.71  E-value=2.4e-16  Score=160.85  Aligned_cols=151  Identities=15%  Similarity=0.167  Sum_probs=125.4

Q ss_pred             cChHHHHHHHHhcccccccCc------cc------cccccccccc--cCCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCe
Q 015523          184 FGESVAKEIGELLLMHNADNS------LK------KEEFNEVEWF--FDRMPRVLIPIANGSEEIEIVTIVDILRRAKVD  249 (405)
Q Consensus       184 ~g~~~a~~~a~~l~~~~~~~~------~~------~~~~~~~~~~--~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~  249 (405)
                      ...+++++|++.|..+..+..      ..      ....+++...  .-+.+||+||++||++..|+..+.++|..+|..
T Consensus       547 vd~~l~~~va~~l~~~~~~~~~~~~~~~~~~~~~~s~als~~~~~~~~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~  626 (752)
T PRK11249        547 IDLTLAQAVAENLGIPLTDEQLNITPPPDVNGLKKDPALSLYAIPDGDIKGRKVAILLNDGVDAADLLAILKALKAKGVH  626 (752)
T ss_pred             HHHHHHHHHHHHhCCCCCCccccccCCCCcCCCCCCcchhccCCCCCCccccEEEEEecCCCCHHHHHHHHHHHHHCCCE
Confidence            457788999999988422110      00      1111111111  114689999999999999999999999999999


Q ss_pred             EEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523          250 VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH  329 (405)
Q Consensus       250 v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La  329 (405)
                      ++++|++++ +|+++.|..|.++.++++.++..||+|+||||......+..++.+++||+++++++|+|+++|+|+.+|+
T Consensus       627 V~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLa  705 (752)
T PRK11249        627 AKLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKA  705 (752)
T ss_pred             EEEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHH
Confidence            999999998 9999999999999999998777899999999965667788899999999999999999999999999999


Q ss_pred             HcCCCC
Q 015523          330 KHGLLK  335 (405)
Q Consensus       330 ~aGlL~  335 (405)
                      ++||.+
T Consensus       706 aAGL~~  711 (752)
T PRK11249        706 ALKLPD  711 (752)
T ss_pred             hcCCCC
Confidence            999965

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.66  E-value=1e-15  Score=156.31  Aligned_cols=117  Identities=17%  Similarity=0.180  Sum_probs=108.1

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      .+++||+||++||++..++..+.++|+++|..+++++++++ +|+++.|..+.+|.++.+.++..||+|+||||......
T Consensus       595 ~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~  673 (752)
T PRK11249        595 IKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIAD  673 (752)
T ss_pred             ccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHH
Confidence            46789999999999999999999999999999999999998 99999999999999999998778999999999545667


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCC
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLR  133 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~  133 (405)
                      +..++.+++||+++++++|+|+++|+| ..+|+++|+.+
T Consensus       674 L~~d~~al~fL~eaykHgK~IAAiCaG-~~LLaaAGL~~  711 (752)
T PRK11249        674 LADNGDARYYLLEAYKHLKPIALAGDA-RKLKAALKLPD  711 (752)
T ss_pred             HhhCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHhcCCCC
Confidence            788999999999999999999999996 45899999854

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.22  E-value=1.4e-10  Score=104.09  Aligned_cols=95  Identities=21%  Similarity=0.301  Sum_probs=75.9

Q ss_pred             CEEEEEeCCCCc-HHHHHHHHHHHH-hCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH--
Q 015523          221 PRVLIPIANGSE-EIEIVTIVDILR-RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE--  296 (405)
Q Consensus       221 ~~V~il~~~g~~-~~e~~~~~~~l~-~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~--  296 (405)
                      +||+|+.++|.+ +.|+   ...|+ .+|+++..++.+..                  ++  ++||+|++|||....+  
T Consensus         1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~l--~~~D~lvipGG~~~~d~l   57 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------DL--DGVDAVVLPGGFSYGDYL   57 (219)
T ss_pred             CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------CC--CCCCEEEECCCCchhhhh
Confidence            589999999987 5665   67777 78998888765321                  22  5799999999964222  


Q ss_pred             ---hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCe
Q 015523          297 ---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK  338 (405)
Q Consensus       297 ---~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~  338 (405)
                         .......+.+||+++.+++++|++||+|.++|+++|||+|+-
T Consensus        58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l  102 (219)
T PRK03619         58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL  102 (219)
T ss_pred             ccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence               233457899999999999999999999999999999999853

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.21  E-value=8.6e-11  Score=107.01  Aligned_cols=128  Identities=17%  Similarity=0.150  Sum_probs=91.4

Q ss_pred             EEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh--
Q 015523          223 VLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ--  299 (405)
Q Consensus       223 V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~--  299 (405)
                      |+|+.++|. ++.|   ..+.|+++|+++.+++.+..  +..             +.+..+||+|++|||....+.+.  
T Consensus         1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~~--~~~-------------~~~l~~~d~liipGG~~~~d~l~~~   62 (238)
T cd01740           1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHNDL--LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG   62 (238)
T ss_pred             CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccCC--ccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence            689999997 6776   66778889999999877541  111             11236799999999964333222  


Q ss_pred             ---cChH-HHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc-CcccCCcEEEcCCeEecC
Q 015523          300 ---KSRI-LKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-EVVNGTKVVVDGKVITSR  369 (405)
Q Consensus       300 ---~~~~-l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~-~~~~~~~~v~dg~iiTa~  369 (405)
                         .... +.++|+++.+++++|++||.|..+|+++|+|+|+. +.++........ ..+.+..++.+++++|+.
T Consensus        63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~  136 (238)
T cd01740          63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG  136 (238)
T ss_pred             cccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence               1223 89999999999999999999999999999999976 555443322221 233455567788888876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.19  E-value=1.5e-10  Score=106.03  Aligned_cols=99  Identities=26%  Similarity=0.370  Sum_probs=75.0

Q ss_pred             cCEEEEEeCCCCc-HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      ++||+|++++|++ +.|+   .+.|+++|+.+.+++....            .+ .-.+  .++||+|++|||....+.+
T Consensus         3 ~~kvaVl~~pG~n~d~e~---~~Al~~aG~~v~~v~~~~~------------~~-~~~~--l~~~DgLvipGGfs~gD~l   64 (261)
T PRK01175          3 SIRVAVLRMEGTNCEDET---VKAFRRLGVEPEYVHINDL------------AA-ERKS--VSDYDCLVIPGGFSAGDYI   64 (261)
T ss_pred             CCEEEEEeCCCCCCHHHH---HHHHHHCCCcEEEEeeccc------------cc-cccc--hhhCCEEEECCCCCccccc
Confidence            4799999999995 6654   6888889999999876531            00 0112  3679999999996332322


Q ss_pred             hcC--------hHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCC
Q 015523          299 QKS--------RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA  336 (405)
Q Consensus       299 ~~~--------~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g  336 (405)
                      ...        +.+.+.|+++.+++|+|.+||.|..+|+++|+|.|
T Consensus        65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg  110 (261)
T PRK01175         65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG  110 (261)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence            211        23558889999999999999999999999999988

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.09  E-value=6.8e-10  Score=101.12  Aligned_cols=128  Identities=19%  Similarity=0.122  Sum_probs=90.5

Q ss_pred             EEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc--
Q 015523           20 VLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR--   96 (405)
Q Consensus        20 i~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~--   96 (405)
                      |+||.++|.+ +.|   ..++|+++|+++.+++....  +..             .....+||+|++|||....+.+.  
T Consensus         1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~~--~~~-------------~~~l~~~d~liipGG~~~~d~l~~~   62 (238)
T cd01740           1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHNDL--LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG   62 (238)
T ss_pred             CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccCC--ccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence            5899999985 444   57888899999999976542  111             11223799999999953223222  


Q ss_pred             ---cChH-HHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-CccccCcEEEeCCeEcCC
Q 015523           97 ---DCEI-LKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVKSNIHVSGEVTTSR  167 (405)
Q Consensus        97 ---~~~~-~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~~~~~~v~dg~iiT~~  167 (405)
                         .... +.++|+++.+++++|++||.|.. +|+++|+|.|+. +.++........ ..+++..++.+++++|+.
T Consensus        63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~  136 (238)
T cd01740          63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQ-ILVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG  136 (238)
T ss_pred             cccccChhHHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence               1223 88999999999999999999776 799999999866 555543332222 345666677788899876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.06  E-value=1.5e-09  Score=97.50  Aligned_cols=94  Identities=23%  Similarity=0.252  Sum_probs=73.3

Q ss_pred             cEEEEEecCCCc-hhhHHHHHHHHH-hcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh--
Q 015523           18 LNVLVPVGFGTE-EMEAVIIVDVLR-RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--   93 (405)
Q Consensus        18 ~ki~ill~~g~~-~~e~~~~~~~l~-~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~--   93 (405)
                      |||+||.++|.+ +.|+   .+.|+ ..|+++..+..+..                  ++  .+||+|++|||....+  
T Consensus         1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~l--~~~D~lvipGG~~~~d~l   57 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------DL--DGVDAVVLPGGFSYGDYL   57 (219)
T ss_pred             CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------CC--CCCCEEEECCCCchhhhh
Confidence            489999999988 4555   77787 78999888865321                  23  3699999999953222  


Q ss_pred             ---ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCc
Q 015523           94 ---RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK  135 (405)
Q Consensus        94 ---~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~  135 (405)
                         .......+.+||+++++++++|++||+|. .+|+++|+|+|+
T Consensus        58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~GLL~g~  101 (219)
T PRK03619         58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGF-QILTEAGLLPGA  101 (219)
T ss_pred             ccchhhhchHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCe
Confidence               22345788999999999999999999965 589999999984

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.01  E-value=2.3e-09  Score=98.23  Aligned_cols=100  Identities=25%  Similarity=0.334  Sum_probs=73.3

Q ss_pred             CcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      .+||+|+.++|++ +.|.   .++|+++|+++.++.....            .+. -.+.  .+||+|++|||+...+.+
T Consensus         3 ~~kvaVl~~pG~n~d~e~---~~Al~~aG~~v~~v~~~~~------------~~~-~~~l--~~~DgLvipGGfs~gD~l   64 (261)
T PRK01175          3 SIRVAVLRMEGTNCEDET---VKAFRRLGVEPEYVHINDL------------AAE-RKSV--SDYDCLVIPGGFSAGDYI   64 (261)
T ss_pred             CCEEEEEeCCCCCCHHHH---HHHHHHCCCcEEEEeeccc------------ccc-ccch--hhCCEEEECCCCCccccc
Confidence            4699999999998 5444   7889899999999976531            000 0112  479999999995322322


Q ss_pred             ccC--------hHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCc
Q 015523           96 RDC--------EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK  135 (405)
Q Consensus        96 ~~~--------~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~  135 (405)
                      ...        +.+.+.|+++.+++++|.+||+|.. +|+++|+|.|.
T Consensus        65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLpg~  111 (261)
T PRK01175         65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLPGF  111 (261)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCCCC
Confidence            221        2345788999999999999999766 79999999873

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.98  E-value=6.2e-09  Score=94.14  Aligned_cols=94  Identities=22%  Similarity=0.307  Sum_probs=74.3

Q ss_pred             CEEEEEeCCCCc-HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh--
Q 015523          221 PRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--  297 (405)
Q Consensus       221 ~~V~il~~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~--  297 (405)
                      |||+|+.++|.+ +.|+.   +.|+++|+.+.++.....                  ++  +++|+|++|||....+.  
T Consensus         1 ~~v~Vl~~~G~n~~~~~~---~al~~~G~~~~~i~~~~~------------------~l--~~~d~lilpGG~~~~d~~~   57 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDTV---YALRLLGVDAEIVWYEDG------------------SL--PDYDGVVLPGGFSYGDYLR   57 (227)
T ss_pred             CeEEEEeCCCcCcHHHHH---HHHHHCCCeEEEEecCCC------------------CC--CCCCEEEECCCCccccccc
Confidence            589999999884 67764   777789999888854321                  12  46999999999632221  


Q ss_pred             ---hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCC
Q 015523          298 ---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK  337 (405)
Q Consensus       298 ---~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~  337 (405)
                         +..+..+.++|+++.+++++|.+||.|..+|+.+|+|+|.
T Consensus        58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~  100 (227)
T TIGR01737        58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA  100 (227)
T ss_pred             ccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence               2345678899999999999999999999999999999884

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=98.89  E-value=1.7e-08  Score=87.96  Aligned_cols=95  Identities=19%  Similarity=0.295  Sum_probs=76.7

Q ss_pred             cCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      ++||+|+.++|. ++.|+..+.+   ++|++.+.+..+..               .+.    .+||+|++|||+.--+.+
T Consensus         2 ~~kvaVi~fpGtN~d~d~~~A~~---~aG~~~~~V~~~d~---------------~~~----~~~d~vv~pGGFSyGDyL   59 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMAAAFE---RAGFEAEDVWHSDL---------------LLG----RDFDGVVLPGGFSYGDYL   59 (231)
T ss_pred             CceEEEEEcCCcCchHHHHHHHH---HcCCCceEEEeeec---------------ccC----CCccEEEEcCCCCccccc
Confidence            589999999997 7888765555   78988888866652               111    179999999998533332


Q ss_pred             -----hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCC
Q 015523          299 -----QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA  336 (405)
Q Consensus       299 -----~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g  336 (405)
                           ..-..+++-++++..+|+++.+||+|-.+|.++|||.|
T Consensus        60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG  102 (231)
T COG0047          60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG  102 (231)
T ss_pred             CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence                 33478999999999999999999999999999999999

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.87  E-value=2.3e-08  Score=78.74  Aligned_cols=92  Identities=30%  Similarity=0.445  Sum_probs=78.4

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcCh
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR  302 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~  302 (405)
                      |++++++++...++..+.+.|+.+++.+++++.+++ ...+           .+  ...+||++++|||.........+.
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-----------~~--~~~~~d~lii~g~~~~~~~~~~~~   66 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-----------DV--DLDDYDGLILPGGPGTPDDLARDE   66 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-----------cC--ChhccCEEEECCCCCchhhhccCH
Confidence            578899999999999999999999999999999987 4444           12  337899999999974444333578


Q ss_pred             HHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523          303 ILKKLLKEQKVAGRIYGAVCSSPIVL  328 (405)
Q Consensus       303 ~l~~~l~~~~~~~k~i~aic~g~~~L  328 (405)
                      .++++++++..++++++++|.|+.++
T Consensus        67 ~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          67 ALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHHHHcCCEEEEECchhHhH
Confidence            99999999999999999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.82  E-value=3.8e-08  Score=89.00  Aligned_cols=93  Identities=24%  Similarity=0.245  Sum_probs=71.7

Q ss_pred             cEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc--
Q 015523           18 LNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR--   94 (405)
Q Consensus        18 ~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~--   94 (405)
                      |||+|+.++|.+ +.|+   .+.|++.|+++.++.....                  .+  .++|+|++|||....+.  
T Consensus         1 ~~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~~------------------~l--~~~d~lilpGG~~~~d~~~   57 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYEDG------------------SL--PDYDGVVLPGGFSYGDYLR   57 (227)
T ss_pred             CeEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCCC------------------CC--CCCCEEEECCCCccccccc
Confidence            589999999886 4566   4888889999988854321                  12  26999999999522221  


Q ss_pred             ---cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCC
Q 015523           95 ---LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR  134 (405)
Q Consensus        95 ---~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g  134 (405)
                         ...+..+.++|+++.+.+++|.+||.|.. +|+++|+|+|
T Consensus        58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Q-lLa~~GlL~G   99 (227)
T TIGR01737        58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQ-ILVEAGLLPG   99 (227)
T ss_pred             ccchhcchHHHHHHHHHHHcCCEEEEECHHHH-HHHHcCCCCC
Confidence               22356788999999999999999999654 8999999988

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=98.78  E-value=3.9e-08  Score=85.82  Aligned_cols=95  Identities=24%  Similarity=0.204  Sum_probs=73.6

Q ss_pred             CcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      ++||+|+.++|.+ +.|..   ..|+++|++.+.+.-+..                  ... .+||+|++|||+.-.+.+
T Consensus         2 ~~kvaVi~fpGtN~d~d~~---~A~~~aG~~~~~V~~~d~------------------~~~-~~~d~vv~pGGFSyGDyL   59 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMA---AAFERAGFEAEDVWHSDL------------------LLG-RDFDGVVLPGGFSYGDYL   59 (231)
T ss_pred             CceEEEEEcCCcCchHHHH---HHHHHcCCCceEEEeeec------------------ccC-CCccEEEEcCCCCccccc
Confidence            4699999999987 56654   445578999888876553                  111 169999999997433433


Q ss_pred             c-----cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCC
Q 015523           96 R-----DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR  134 (405)
Q Consensus        96 ~-----~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g  134 (405)
                      +     .-.++++-++++.++++++.+||+|-. +|.++|||.|
T Consensus        60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG  102 (231)
T COG0047          60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG  102 (231)
T ss_pred             CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence            3     236789999999999999999999877 7889999999

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.77  E-value=5.7e-08  Score=79.37  Aligned_cols=165  Identities=22%  Similarity=0.275  Sum_probs=108.3

Q ss_pred             CcEEEEEe-----cCCCchhhHHHHHHHHHhcCCEEEEEecCCCce--eEeccCcEEe---------------cCcccCC
Q 015523           17 ALNVLVPV-----GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--VEASSGTRLV---------------ADTSISN   74 (405)
Q Consensus        17 ~~ki~ill-----~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~--v~~~~g~~v~---------------~~~~~~~   74 (405)
                      +|||++++     |||....|-...+-.+.+.|.++...+|+..+.  |.--.|....               --.++++
T Consensus         1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~   80 (217)
T COG3155           1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQ   80 (217)
T ss_pred             CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhhhhhccccccchhhhHHHHHHHHhhccccchhh
Confidence            57899997     889999999999999999999999999988522  1111111111               1124556


Q ss_pred             CCCCcccEEEEcCCchhhhccc----------cChHHHHHHHHHHHcCCEEEEEccchHHhhhh-cCCCCCcceeec--c
Q 015523           75 CSHQVFDLIALPGGMPGSVRLR----------DCEILKKITSKQAEEKRLYGAICAAPAVTLLP-WGLLRRKQITCH--P  141 (405)
Q Consensus        75 ~~~~~~d~liipgg~~~~~~~~----------~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~-agll~g~~~t~~--~  141 (405)
                      .++.+||++++|||+.....+.          -++++.+..+.+++.+||++-+|-+++. |.+ .|.  +.+.|.-  .
T Consensus        81 a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m-~pki~g~--~~~~TIGnD~  157 (217)
T COG3155          81 ADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAM-LPKIFGF--PLRLTIGNDI  157 (217)
T ss_pred             cCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHH-HHHHcCC--ceeEEecCCc
Confidence            6677899999999975444432          3688999999999999999999999884 443 342  3344432  2


Q ss_pred             CccccCCC--Ccccc---CcEEE--eCCeEcCCCcccHHHHHHHHHHHhcChHH
Q 015523          142 AFTDKLPT--FWAVK---SNIHV--SGEVTTSRGPGTSFEFALCLVEQLFGESV  188 (405)
Q Consensus       142 ~~~~~l~~--~~~~~---~~~v~--dg~iiT~~g~~~~~~~~l~ii~~~~g~~~  188 (405)
                      .-.+.|++  ...++   ..+|+  +.+++|    +.++-++..|-+.-.|.+.
T Consensus       158 dTa~a~~~mG~eHv~cPvd~iV~D~~~Kvvt----TPAYMLA~~IaeAAsGIdK  207 (217)
T COG3155         158 DTAEALEEMGAEHVPCPVDDIVVDEDNKVVT----TPAYMLAQNIAEAASGIDK  207 (217)
T ss_pred             cHHHHHHHhCcccCCCCccceeecCCCceec----ChHHHHHHHHHHHHhhHHH
Confidence            23334444  22221   22444  357777    4456677777777666543

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.76  E-value=8.7e-08  Score=78.29  Aligned_cols=148  Identities=24%  Similarity=0.319  Sum_probs=103.0

Q ss_pred             cCEEEEEe-----CCCCcHHHHHHHHHHHHhCCCeEEEEeecCCcee------ecC-----CCcEEee-------CCCcc
Q 015523          220 MPRVLIPI-----ANGSEEIEIVTIVDILRRAKVDVVVASVERSTQI------VAS-----QGVKIIA-------DKSIS  276 (405)
Q Consensus       220 ~~~V~il~-----~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v------~~~-----~g~~v~~-------~~~l~  276 (405)
                      |++|++++     |||.+-.|-...+..+.+.|.++...+|+.. ..      +++     .+..++.       -..+.
T Consensus         1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~-Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~   79 (217)
T COG3155           1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQ-QVHVINHLTGEAMPETRNVLVESARIARGEIRPLA   79 (217)
T ss_pred             CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCch-hhhhhhhccccccchhhhHHHHHHHHhhccccchh
Confidence            57899996     7999999999999999999999999999864 21      111     1111111       12345


Q ss_pred             CcCCCCccEEEEcCCccchHhhh----------cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeec--Ccc
Q 015523          277 DAAESVYDLIILPGGVAGAERLQ----------KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA--HPS  344 (405)
Q Consensus       277 ~~~~~~~D~livpgG~~~~~~~~----------~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~--~~~  344 (405)
                      +.++.+||++|+|||++...++.          -++++....+.+++.||+++-+|-++.+|... +=.+.+.|.  .+.
T Consensus        80 ~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki-~g~~~~~TIGnD~d  158 (217)
T COG3155          80 QADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKI-FGFPLRLTIGNDID  158 (217)
T ss_pred             hcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHH-cCCceeEEecCCcc
Confidence            56778999999999997666643          37899999999999999999999999999873 112334444  234


Q ss_pred             hhhhhhc------CcccCCcEEE-cCCeEecC
Q 015523          345 VIGKLTN------EVVNGTKVVV-DGKVITSR  369 (405)
Q Consensus       345 ~~~~l~~------~~~~~~~~v~-dg~iiTa~  369 (405)
                      ..+.+++      ....+..++. +.+++|..
T Consensus       159 Ta~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP  190 (217)
T COG3155         159 TAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP  190 (217)
T ss_pred             HHHHHHHhCcccCCCCccceeecCCCceecCh
Confidence            4555554      1233444444 45777754

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.73  E-value=8.1e-08  Score=85.27  Aligned_cols=92  Identities=26%  Similarity=0.317  Sum_probs=75.1

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-hhh
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RLQ  299 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-~~~  299 (405)
                      |||+|++.+|+....+..+.+.|+..|+.++++..+..                 +++  .+||++++|||..... .+.
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-----------------~~l--~~~d~iii~GG~~~~~~~~~   61 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-----------------GDL--PDCDALIIPGGESTTIGRLM   61 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-----------------HHh--ccCCEEEECCCcHHHHHHHH
Confidence            58999999999999999999999999988887765421                 233  5799999999964321 233


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ....+.++|+++..++++|.+||.|..+|+.+
T Consensus        62 ~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~   93 (200)
T PRK13527         62 KREGILDEIKEKIEEGLPILGTCAGLILLAKE   93 (200)
T ss_pred             hhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            45568999999999999999999999999987

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.67  E-value=2.2e-07  Score=73.00  Aligned_cols=92  Identities=30%  Similarity=0.345  Sum_probs=74.4

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccCh
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE   99 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~   99 (405)
                      |++++.+++...++..+.+.|+++++++++++.+.+ +..+             .....+||++++|||.........+.
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~   66 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLARDE   66 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence            578999999999999999999999999999999987 5544             12224799999999853333222468


Q ss_pred             HHHHHHHHHHHcCCEEEEEccchHHhh
Q 015523          100 ILKKITSKQAEEKRLYGAICAAPAVTL  126 (405)
Q Consensus       100 ~~~~~l~~~~~~~~~i~aic~g~~~~L  126 (405)
                      .++++++++..++++++++|.|.. ++
T Consensus        67 ~~~~~i~~~~~~~~~i~~~c~g~~-~l   92 (115)
T cd01653          67 ALLALLREAAAAGKPILGICLGAQ-LL   92 (115)
T ss_pred             HHHHHHHHHHHcCCEEEEECchhH-hH
Confidence            999999999999999999999644 45

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.59  E-value=1.8e-07  Score=80.14  Aligned_cols=89  Identities=20%  Similarity=0.305  Sum_probs=66.5

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH--hh
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE--RL  298 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~--~~  298 (405)
                      +||+|+..+|....    -...|++.|+++.++...                   +++  .+||.|++|||. ...  .+
T Consensus         3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~-------------------~~l--~~~D~LILPGG~-~t~~~~l   56 (179)
T PRK13526          3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN-------------------NDF--DSIDRLVIPGGE-STTLLNL   56 (179)
T ss_pred             cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH-------------------HHH--hCCCEEEECCCh-HHHHHHH
Confidence            78999999987655    456667778765554311                   223  579999999995 444  45


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHH----cCCCCC
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK----HGLLKA  336 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~----aGlL~g  336 (405)
                      .++..+.+.|+++.+ +|++.+||.|+.+|++    .|++++
T Consensus        57 l~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg   97 (179)
T PRK13526         57 LNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL   97 (179)
T ss_pred             hhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence            566679999999875 7899999999999999    445554

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.56  E-value=2.1e-07  Score=69.78  Aligned_cols=92  Identities=33%  Similarity=0.478  Sum_probs=73.5

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcCh
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR  302 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~  302 (405)
                      |+++.+++....++..+.+.+.+.++.+.+++.... ....             .....++|++++|||.........+.
T Consensus         1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~   66 (92)
T cd03128           1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE   66 (92)
T ss_pred             CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence            467778888777889999999999999999999986 3333             12337899999999964333333478


Q ss_pred             HHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523          303 ILKKLLKEQKVAGRIYGAVCSSPIVL  328 (405)
Q Consensus       303 ~l~~~l~~~~~~~k~i~aic~g~~~L  328 (405)
                      .+++++.++..++++++++|.|+.++
T Consensus        67 ~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          67 ALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             HHHHHHHHHHHcCCEEEEEecccccC
Confidence            99999999999999999999998753

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.56  E-value=2.9e-07  Score=81.69  Aligned_cols=92  Identities=20%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRLR   96 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~~   96 (405)
                      |||++++.+|+.......+.+.|+..+++++++..+..                 .+++  +||++|+|||.... ..+.
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-----------------~~l~--~~d~iii~GG~~~~~~~~~   61 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-----------------GDLP--DCDALIIPGGESTTIGRLM   61 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-----------------HHhc--cCCEEEECCCcHHHHHHHH
Confidence            58999999999999999999999999988887765421                 1232  69999999994221 1223


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ....+.++|++++++++||.+||.|.. +|+.+
T Consensus        62 ~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~   93 (200)
T PRK13527         62 KREGILDEIKEKIEEGLPILGTCAGLI-LLAKE   93 (200)
T ss_pred             hhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence            445689999999999999999999766 67775

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.55  E-value=2.6e-07  Score=84.53  Aligned_cols=98  Identities=19%  Similarity=0.307  Sum_probs=69.3

Q ss_pred             CEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh-
Q 015523          221 PRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL-  298 (405)
Q Consensus       221 ~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~-  298 (405)
                      +||+|++++|. ++.|+   ...|+.+|++++.+..+.  ...             .+.+..+||+|++|||....+.+ 
T Consensus         2 pkV~Vl~~pGtNce~e~---~~A~~~aG~~~~~v~~~d--l~~-------------~~~~l~~~~~lvipGGFS~gD~l~   63 (259)
T PF13507_consen    2 PKVAVLRFPGTNCERET---AAAFENAGFEPEIVHIND--LLS-------------GESDLDDFDGLVIPGGFSYGDYLR   63 (259)
T ss_dssp             -EEEEEE-TTEEEHHHH---HHHHHCTT-EEEEEECCH--HHT-------------TS--GCC-SEEEE-EE-GGGGTTS
T ss_pred             CEEEEEECCCCCCHHHH---HHHHHHcCCCceEEEEEe--ccc-------------ccCchhhCcEEEECCccCccccch
Confidence            69999999997 77774   456778999999887543  100             11133789999999988533332 


Q ss_pred             ---------hcChHHHHHHHHHhhc-CCEEEEEchHHHHHHHcCCCCC
Q 015523          299 ---------QKSRILKKLLKEQKVA-GRIYGAVCSSPIVLHKHGLLKA  336 (405)
Q Consensus       299 ---------~~~~~l~~~l~~~~~~-~k~i~aic~g~~~La~aGlL~g  336 (405)
                               ..+..+++.|++|.++ ++++.+||+|-.+|.++|||.+
T Consensus        64 sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~  111 (259)
T PF13507_consen   64 SGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPG  111 (259)
T ss_dssp             TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCC
Confidence                     2346778999999988 9999999999999999999998

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.53  E-value=3.1e-07  Score=80.20  Aligned_cols=85  Identities=20%  Similarity=0.225  Sum_probs=67.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-Hhhhc
Q 015523          222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERLQK  300 (405)
Q Consensus       222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-~~~~~  300 (405)
                      ||+|+..+|....    ..+.|++.|+++.++++.                   +++  +++|++++|||.... ..+..
T Consensus         1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~-------------------~~l--~~~d~liipGG~~~~~~~l~~   55 (184)
T TIGR03800         1 KIGVLALQGAVRE----HARALEALGVEGVEVKRP-------------------EQL--DEIDGLIIPGGESTTLSRLLD   55 (184)
T ss_pred             CEEEEEccCCHHH----HHHHHHHCCCEEEEECCh-------------------HHh--ccCCEEEECCCCHHHHHHHHH
Confidence            6899999987665    448888999988888552                   122  579999999996332 23445


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +..+.+.|+++.+++++|.+||.|..+|++.
T Consensus        56 ~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~   86 (184)
T TIGR03800        56 KYGMFEPLRNFILSGLPVFGTCAGLIMLAKE   86 (184)
T ss_pred             hccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence            5678999999999999999999999999988

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.42  E-value=1.2e-06  Score=65.50  Aligned_cols=89  Identities=30%  Similarity=0.336  Sum_probs=70.5

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccCh
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE   99 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~   99 (405)
                      |+++..+++...++..+.+.|++.++++.+++.... ....             .....+||++++|||.........+.
T Consensus         1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~   66 (92)
T cd03128           1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE   66 (92)
T ss_pred             CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence            467888888888999999999999999999999886 3333             12234799999999953232222468


Q ss_pred             HHHHHHHHHHHcCCEEEEEccch
Q 015523          100 ILKKITSKQAEEKRLYGAICAAP  122 (405)
Q Consensus       100 ~~~~~l~~~~~~~~~i~aic~g~  122 (405)
                      ...+++.++++++++++++|.|.
T Consensus        67 ~~~~~~~~~~~~~~~i~~~~~g~   89 (92)
T cd03128          67 ALLALLREAAAAGKPVLGICLGA   89 (92)
T ss_pred             HHHHHHHHHHHcCCEEEEEeccc
Confidence            89999999999999999999963

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.41  E-value=1.2e-06  Score=75.15  Aligned_cols=83  Identities=17%  Similarity=0.209  Sum_probs=61.6

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh--cc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--RL   95 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~--~~   95 (405)
                      +||+||.++|...+    -...|++.|+++.++....                   +.  .+||.||+|||. ...  .+
T Consensus         3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~~-------------------~l--~~~D~LILPGG~-~t~~~~l   56 (179)
T PRK13526          3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFNN-------------------DF--DSIDRLVIPGGE-STTLLNL   56 (179)
T ss_pred             cEEEEEECCccHHH----HHHHHHHcCCcEEEECCHH-------------------HH--hCCCEEEECCCh-HHHHHHH
Confidence            68999999997766    4567777777655553111                   23  269999999994 333  45


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .++..+.+.|+++.+ ++|+.++|.|.. +|++
T Consensus        57 l~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~   87 (179)
T PRK13526         57 LNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSK   87 (179)
T ss_pred             hhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHc
Confidence            556679999999875 789999999766 6887

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.34  E-value=1.2e-06  Score=76.50  Aligned_cols=85  Identities=16%  Similarity=0.041  Sum_probs=65.3

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hcccc
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRLRD   97 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~~~   97 (405)
                      ||+|+..+|...+    ..+.|++.++++.++++..                   +.+  +||+++||||.... ..+..
T Consensus         1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~~-------------------~l~--~~d~liipGG~~~~~~~l~~   55 (184)
T TIGR03800         1 KIGVLALQGAVRE----HARALEALGVEGVEVKRPE-------------------QLD--EIDGLIIPGGESTTLSRLLD   55 (184)
T ss_pred             CEEEEEccCCHHH----HHHHHHHCCCEEEEECChH-------------------Hhc--cCCEEEECCCCHHHHHHHHH
Confidence            6999999987666    4588999999998886521                   232  69999999995221 23344


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      +..+.+.|++++++++||.++|.|.. +|++.
T Consensus        56 ~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~   86 (184)
T TIGR03800        56 KYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE   86 (184)
T ss_pred             hccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence            56788999999999999999999755 68876

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.34  E-value=1.9e-06  Score=76.25  Aligned_cols=75  Identities=20%  Similarity=0.243  Sum_probs=59.4

Q ss_pred             HHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc--hHhhhcChHHHHHHHHHhhcCC
Q 015523          239 IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERLQKSRILKKLLKEQKVAGR  316 (405)
Q Consensus       239 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~--~~~~~~~~~l~~~l~~~~~~~k  316 (405)
                      -.+.|++.|+++.++++..+                 +++  .++|+|++|||...  +..+..+..+.+.|+++.++|+
T Consensus        16 ~~~~l~~~G~~v~~~s~~~~-----------------~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~   76 (198)
T cd03130          16 NLELLEAAGAELVPFSPLKD-----------------EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGG   76 (198)
T ss_pred             HHHHHHHCCCEEEEECCCCC-----------------CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence            45777889999998886432                 223  34999999999633  3456667789999999999999


Q ss_pred             EEEEEchHHHHHHHcC
Q 015523          317 IYGAVCSSPIVLHKHG  332 (405)
Q Consensus       317 ~i~aic~g~~~La~aG  332 (405)
                      +|.+||.|.++|++.-
T Consensus        77 pilgICgG~qlL~~~~   92 (198)
T cd03130          77 PIYAECGGLMYLGESL   92 (198)
T ss_pred             CEEEEcccHHHHHHHh
Confidence            9999999999998753

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.30  E-value=4.2e-06  Score=73.50  Aligned_cols=87  Identities=23%  Similarity=0.268  Sum_probs=66.4

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-Hhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-~~~  298 (405)
                      ||+|+|++..|....-    .+.|...++++..+++.                   +++  ++||++++|||.... ..+
T Consensus         1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l--~~~dgiii~GG~~~~~~~~   55 (189)
T PRK13525          1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDL--DEIDGLILPGGESTTMGKL   55 (189)
T ss_pred             CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHh--ccCCEEEECCCChHHHHHH
Confidence            4799999999765544    35578888888877431                   223  579999999996322 223


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..+..+.++++++.+++++|.+||.|..+|+.+
T Consensus        56 ~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~   88 (189)
T PRK13525         56 LRDFGLLEPLREFIASGLPVFGTCAGMILLAKE   88 (189)
T ss_pred             HHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            455677899999999999999999999999984

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.25  E-value=3.9e-06  Score=76.83  Aligned_cols=99  Identities=23%  Similarity=0.247  Sum_probs=67.0

Q ss_pred             cEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           18 LNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        18 ~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      .||+|+.++|.+ +.|+   ..+|+.+|++++.+..+.-  +.             ......+||+|++|||....+.+.
T Consensus         2 pkV~Vl~~pGtNce~e~---~~A~~~aG~~~~~v~~~dl--~~-------------~~~~l~~~~~lvipGGFS~gD~l~   63 (259)
T PF13507_consen    2 PKVAVLRFPGTNCERET---AAAFENAGFEPEIVHINDL--LS-------------GESDLDDFDGLVIPGGFSYGDYLR   63 (259)
T ss_dssp             -EEEEEE-TTEEEHHHH---HHHHHCTT-EEEEEECCHH--HT-------------TS--GCC-SEEEE-EE-GGGGTTS
T ss_pred             CEEEEEECCCCCCHHHH---HHHHHHcCCCceEEEEEec--cc-------------ccCchhhCcEEEECCccCccccch
Confidence            489999999987 4444   6778889999999875431  00             011224799999999974444332


Q ss_pred             ----------cChHHHHHHHHHHHc-CCEEEEEccchHHhhhhcCCCCCc
Q 015523           97 ----------DCEILKKITSKQAEE-KRLYGAICAAPAVTLLPWGLLRRK  135 (405)
Q Consensus        97 ----------~~~~~~~~l~~~~~~-~~~i~aic~g~~~~La~agll~g~  135 (405)
                                .++.+++.|+++.++ ++++.+||+|-. +|.++|+|.+.
T Consensus        64 sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQ-iL~~~Gllp~~  112 (259)
T PF13507_consen   64 SGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQ-ILVELGLLPGG  112 (259)
T ss_dssp             TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHH-HHCCCCCSTT-
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhH-HHHHhCcCCCc
Confidence                      235678889999999 999999999655 89999999883

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=98.18  E-value=7.1e-06  Score=74.30  Aligned_cols=87  Identities=23%  Similarity=0.285  Sum_probs=66.1

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-Hhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-~~~  298 (405)
                      ||||+||...|....-    ...|++.|+++.+++..                   +++  .++|.||+|||.... ..+
T Consensus         1 ~m~igVLa~qG~~~e~----~~aL~~lG~ev~~v~~~-------------------~~L--~~~DgLILPGGfs~~~~~L   55 (248)
T PLN02832          1 MMAIGVLALQGSFNEH----IAALRRLGVEAVEVRKP-------------------EQL--EGVSGLIIPGGESTTMAKL   55 (248)
T ss_pred             CcEEEEEeCCCchHHH----HHHHHHCCCcEEEeCCH-------------------HHh--ccCCEEEeCCCHHHHHHHH
Confidence            5799999999875544    47777888777666442                   233  568999999987432 334


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .....+.+.|+++.++|+++.++|.|..+|++.
T Consensus        56 ~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~   88 (248)
T PLN02832         56 AERHNLFPALREFVKSGKPVWGTCAGLIFLAER   88 (248)
T ss_pred             HhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            444468889999988999999999999999875

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.15  E-value=1.1e-05  Score=71.46  Aligned_cols=87  Identities=21%  Similarity=0.230  Sum_probs=66.0

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      |||.|+-+.+-+..   ...+.|++.|+++.+++.                   .+++  ++||++++|||......+..
T Consensus         1 ~~~~v~~~~~~~~~---~~~~~l~~~G~~~~~~~~-------------------~~~~--~~~d~iii~G~~~~~~~~~~   56 (200)
T PRK13143          1 MMIVIIDYGVGNLR---SVSKALERAGAEVVITSD-------------------PEEI--LDADGIVLPGVGAFGAAMEN   56 (200)
T ss_pred             CeEEEEECCCccHH---HHHHHHHHCCCeEEEECC-------------------HHHH--ccCCEEEECCCCCHHHHHHH
Confidence            57888877765554   457888889999888731                   0223  57999999996322233445


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+.+.++|+++.++++++.+||.|..+|+++
T Consensus        57 ~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~   87 (200)
T PRK13143         57 LSPLRDVILEAARSGKPFLGICLGMQLLFES   87 (200)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            5678999999999999999999999999985

>PRK08250 glutamine amidotransferase; Provisional

Probab=98.09  E-value=3.3e-05  Score=70.21  Aligned_cols=94  Identities=18%  Similarity=0.263  Sum_probs=68.5

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-hh
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-LQ  299 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-~~  299 (405)
                      |||.|+....+...+..  .+.+...|+++++..+..+.+        + |    .+.  .+||++||.||..+... ..
T Consensus         1 m~i~vi~h~~~e~~g~~--~~~~~~~g~~~~~~~~~~g~~--------~-p----~~~--~~~d~vii~GGp~~~~~~~~   63 (235)
T PRK08250          1 MRVHFIIHESFEAPGAY--LKWAENRGYDISYSRVYAGEA--------L-P----ENA--DGFDLLIVMGGPQSPRTTRE   63 (235)
T ss_pred             CeEEEEecCCCCCchHH--HHHHHHCCCeEEEEEccCCCC--------C-C----CCc--cccCEEEECCCCCChhhccc
Confidence            57899988888877764  566688898888866554301        1 1    122  67999999999643221 11


Q ss_pred             cC-----hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KS-----RILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~-----~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..     ....++|+++...+++|.+||.|..+|+.+
T Consensus        64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  100 (235)
T PRK08250         64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA  100 (235)
T ss_pred             cccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            11     467899999999999999999999999986

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.08  E-value=2.3e-05  Score=78.35  Aligned_cols=92  Identities=18%  Similarity=0.203  Sum_probs=70.0

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc--hHh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AER  297 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~--~~~  297 (405)
                      ..||+|.-.+-|+.. +..=.+.|++.+.++..+++-..                 +++  +++|+|++|||...  ...
T Consensus       245 ~~~iava~d~af~f~-y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l--~~~D~lilpGG~~~~~~~~  304 (451)
T PRK01077        245 GVRIAVARDAAFNFY-YPENLELLRAAGAELVFFSPLAD-----------------EAL--PDCDGLYLGGGYPELFAAE  304 (451)
T ss_pred             CceEEEEecCccccc-HHHHHHHHHHCCCEEEEeCCcCC-----------------CCC--CCCCEEEeCCCchhhHHHH
Confidence            469999998865554 11123667778899988876432                 123  47899999999743  345


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus       305 l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~  338 (451)
T PRK01077        305 LAANTSMRASIRAAAAAGKPIYAECGGLMYLGES  338 (451)
T ss_pred             HhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            6778889999999999999999999999999764

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.07  E-value=1.3e-05  Score=71.05  Aligned_cols=76  Identities=21%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             HHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh--hhccccChHHHHHHHHHHHcCC
Q 015523           36 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRLRDCEILKKITSKQAEEKR  113 (405)
Q Consensus        36 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~--~~~~~~~~~~~~~l~~~~~~~~  113 (405)
                      -.+.|++.|+++.++++..+                 ++.+  ++|+||+|||.+.  ...+..+..+.+.|+++.++++
T Consensus        16 ~~~~l~~~G~~v~~~s~~~~-----------------~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~   76 (198)
T cd03130          16 NLELLEAAGAELVPFSPLKD-----------------EELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGG   76 (198)
T ss_pred             HHHHHHHCCCEEEEECCCCC-----------------CCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence            46788889999999886532                 1333  4999999999533  3456666788999999999999


Q ss_pred             EEEEEccchHHhhhhcCC
Q 015523          114 LYGAICAAPAVTLLPWGL  131 (405)
Q Consensus       114 ~i~aic~g~~~~La~agl  131 (405)
                      ||.+||.|.+ +|++.-.
T Consensus        77 pilgICgG~q-lL~~~~~   93 (198)
T cd03130          77 PIYAECGGLM-YLGESLD   93 (198)
T ss_pred             CEEEEcccHH-HHHHHhh
Confidence            9999999755 6776443

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK07053 glutamine amidotransferase; Provisional

Probab=98.07  E-value=3e-05  Score=70.43  Aligned_cols=96  Identities=19%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-  297 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-  297 (405)
                      +|++|.|+-....+  .+..+.+.|+..|+.++++.+..+             +....+.  .+||++||+||..+... 
T Consensus         1 ~m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~-------------~~~~~~~--~~~d~lii~Ggp~~~~d~   63 (234)
T PRK07053          1 MMKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVD-------------DLETLDA--LEPDLLVVLGGPIGVYDD   63 (234)
T ss_pred             CCceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCC-------------ccCCCCc--cCCCEEEECCCCCCCCCC
Confidence            47887777554443  334578899999999998877543             1111222  57999999998644322 


Q ss_pred             --hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 --LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 --~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                        ..--..++++|+++.+.++++.+||-|..+|+.+
T Consensus        64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a   99 (234)
T PRK07053         64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA   99 (234)
T ss_pred             CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence              1223478899999999999999999999999987

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=98.06  E-value=1.4e-05  Score=72.45  Aligned_cols=88  Identities=16%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh-hhcc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~-~~~~   95 (405)
                      +|||+||.++|....-    .+.|++.++++.+++..                   ++++  ++|.||+|||++. ...+
T Consensus         1 ~m~igVLa~qG~~~e~----~~aL~~lG~ev~~v~~~-------------------~~L~--~~DgLILPGGfs~~~~~L   55 (248)
T PLN02832          1 MMAIGVLALQGSFNEH----IAALRRLGVEAVEVRKP-------------------EQLE--GVSGLIIPGGESTTMAKL   55 (248)
T ss_pred             CcEEEEEeCCCchHHH----HHHHHHCCCcEEEeCCH-------------------HHhc--cCCEEEeCCCHHHHHHHH
Confidence            4699999999866555    57778888877666542                   1343  5899999999632 2334


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  130 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag  130 (405)
                      .....+.+.|+++.++++||.++|.| ..+|++..
T Consensus        56 ~~~~gl~~~I~~~v~~g~PvLGiC~G-mqlLa~~~   89 (248)
T PLN02832         56 AERHNLFPALREFVKSGKPVWGTCAG-LIFLAERA   89 (248)
T ss_pred             HhhcchHHHHHHHHHcCCCEEEEChh-HHHHHHHh
Confidence            44446888999999999999999996 54787753

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.05  E-value=1.8e-05  Score=69.43  Aligned_cols=86  Identities=17%  Similarity=0.093  Sum_probs=62.6

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hcc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~   95 (405)
                      +|||+|+...|-..+-    .+.|+..++++.++++.                   .++  .+||++++|||.... +..
T Consensus         1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l--~~~dgiii~GG~~~~~~~~   55 (189)
T PRK13525          1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDL--DEIDGLILPGGESTTMGKL   55 (189)
T ss_pred             CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHh--ccCCEEEECCCChHHHHHH
Confidence            4689999998765544    46678888888887531                   123  369999999994221 223


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ..+..+.+++++++++++||.+||.|.. +|+.
T Consensus        56 ~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~   87 (189)
T PRK13525         56 LRDFGLLEPLREFIASGLPVFGTCAGMI-LLAK   87 (189)
T ss_pred             HHhccHHHHHHHHHHCCCeEEEECHHHH-HHHh
Confidence            3455678999999999999999999765 5775

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.00  E-value=3e-05  Score=84.66  Aligned_cols=108  Identities=17%  Similarity=0.336  Sum_probs=79.2

Q ss_pred             CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEE-eeCCCc-cCcCCCCccEEEEcCCccch
Q 015523          219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKI-IADKSI-SDAAESVYDLIILPGGVAGA  295 (405)
Q Consensus       219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v-~~~~~l-~~~~~~~~D~livpgG~~~~  295 (405)
                      ..+||+|+.++|. ++.|...+++   ++|+++..+..+.-  ...    .+ ..-..+ .++  .+||+|++|||+...
T Consensus       976 ~kpkvaIl~~pGtNce~d~a~Af~---~aG~~~~~v~~~dl--~~~----~i~~s~~~~~~~l--~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857       976 EKPRVVIPVFPGTNSEYDSAKAFE---KEGAEVNLVIFRNL--NEE----ALVESVETMVDEI--DKSQILMLPGGFSAG 1044 (1239)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH---HcCCceEEEEEecC--ccc----ccccchhhhhccc--ccCcEEEEcCccCcc
Confidence            4689999999997 7888665554   59998888775541  000    00 000111 223  789999999998533


Q ss_pred             Hh----------hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCC
Q 015523          296 ER----------LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK  337 (405)
Q Consensus       296 ~~----------~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~  337 (405)
                      +.          +..++.+.+-+++|+++++++.+||+|-.+|.+.|||.+.
T Consensus      1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857      1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred             cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence            32          3456889999999999999999999999999999999853

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=97.96  E-value=3.1e-05  Score=67.68  Aligned_cols=84  Identities=26%  Similarity=0.316  Sum_probs=64.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-hhhcC
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RLQKS  301 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-~~~~~  301 (405)
                      |+|++.+|......    +.|++.++++..+++..                   ++  .++|.+++|||..... ....+
T Consensus         1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~   55 (183)
T cd01749           1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR   55 (183)
T ss_pred             CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence            57888888766444    88899999998886632                   12  5689999999963222 23345


Q ss_pred             hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          302 RILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       302 ~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..+.++|+++.++++++.++|.|..+|+.+
T Consensus        56 ~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~   85 (183)
T cd01749          56 TGLLDPLREFIRAGKPVFGTCAGLILLAKE   85 (183)
T ss_pred             CCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            567899999999999999999999999875

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=97.95  E-value=4.2e-05  Score=67.46  Aligned_cols=86  Identities=26%  Similarity=0.233  Sum_probs=62.3

Q ss_pred             EEEEeCCC-CcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc-
Q 015523          223 VLIPIANG-SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK-  300 (405)
Q Consensus       223 V~il~~~g-~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~-  300 (405)
                      |+|+.|+. -+..+   +...+...|++++++++..+                     +.++|+|++|||......+.. 
T Consensus         1 ~~~~~y~~~gN~~~---l~~~~~~~G~~~~~~~~~~~---------------------~~~~d~lilpGg~~~~~~~~~~   56 (194)
T cd01750           1 IAVIRYPDISNFTD---LDPLAREPGVDVRYVEVPEG---------------------LGDADLIILPGSKDTIQDLAWL   56 (194)
T ss_pred             CEeecCCCccCHHH---HHHHHhcCCceEEEEeCCCC---------------------CCCCCEEEECCCcchHHHHHHH
Confidence            35666653 34433   45666678889988876541                     256899999999732333322 


Q ss_pred             -ChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523          301 -SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  332 (405)
Q Consensus       301 -~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG  332 (405)
                       +..+.+.|+++.++|++|.+||.|..+|++.-
T Consensus        57 ~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~   89 (194)
T cd01750          57 RKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI   89 (194)
T ss_pred             HHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence             45688999999999999999999999998763

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=97.90  E-value=0.00015  Score=80.30  Aligned_cols=102  Identities=13%  Similarity=0.130  Sum_probs=77.6

Q ss_pred             CCcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          218 DRMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       218 ~~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      .+.+||+|+.++|. ++.|+..   .|..+||++..+..+.=  .        .     .+.+..+|++|++|||+...+
T Consensus      1053 ~~~p~vail~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dl--~--------~-----~~~~l~~~~~lv~~GGFSygD 1114 (1310)
T TIGR01735      1053 GVRPKVAILREQGVNGDREMAA---AFDRAGFEAWDVHMSDL--L--------A-----GRVHLDEFRGLAACGGFSYGD 1114 (1310)
T ss_pred             CCCceEEEEECCCCCCHHHHHH---HHHHhCCCcEEEEEecc--c--------c-----CCcchhheeEEEEcCCCCCcc
Confidence            34689999999998 7778665   45578988887765531  0        0     111226799999999974221


Q ss_pred             ----------hhhcChHHHHHHHHHh-hcCCEEEEEchHHHHHH-HcCCCCCC
Q 015523          297 ----------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLH-KHGLLKAK  337 (405)
Q Consensus       297 ----------~~~~~~~l~~~l~~~~-~~~k~i~aic~g~~~La-~aGlL~g~  337 (405)
                                .+..++.+.+.+++|+ ++++++.+||+|-.+|. ..||+.|.
T Consensus      1115 ~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1115 VLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred             chhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence                      2456789999999999 89999999999999999 99999874

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.90  E-value=0.00011  Score=81.08  Aligned_cols=101  Identities=16%  Similarity=0.191  Sum_probs=77.3

Q ss_pred             CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-
Q 015523          219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  296 (405)
Q Consensus       219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-  296 (405)
                      ..+||+|+.++|. ++.|+..+   |..+||.+..+..+.  ...+             .....+|++|++|||+...+ 
T Consensus      1036 ~~pkVaVl~~pGtN~~~e~~~A---f~~aGf~~~~V~~~d--l~~~-------------~~~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206       1036 SKPKVAIIREEGSNGDREMAAA---FYAAGFEPWDVTMSD--LLNG-------------RISLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred             CCCeEEEEECCCCCCHHHHHHH---HHHcCCceEEEEeee--cccc-------------cccccceeEEEEcCcCCCccc
Confidence            4689999999997 77786654   457999887776553  1111             11126799999999984222 


Q ss_pred             ---------hhhcChHHHHHHHHHh-hcCCEEEEEchHHHHHHHcCCCCCC
Q 015523          297 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHGLLKAK  337 (405)
Q Consensus       297 ---------~~~~~~~l~~~l~~~~-~~~k~i~aic~g~~~La~aGlL~g~  337 (405)
                               .+..++.+.+.+++|+ +.++++.+||+|-.+|.+.|||.|-
T Consensus      1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~ 1148 (1307)
T PLN03206       1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGP 1148 (1307)
T ss_pred             cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCC
Confidence                     3456789999999999 6699999999999999999999875

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.88  E-value=3.8e-05  Score=68.13  Aligned_cols=87  Identities=20%  Similarity=0.173  Sum_probs=63.1

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD   97 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~   97 (405)
                      |||.|+=+.+-+.   ..+.+.|++.|+++.+++..                   .++  .+||++++|||......+..
T Consensus         1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~~-------------------~~~--~~~d~iii~G~~~~~~~~~~   56 (200)
T PRK13143          1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSDP-------------------EEI--LDADGIVLPGVGAFGAAMEN   56 (200)
T ss_pred             CeEEEEECCCccH---HHHHHHHHHCCCeEEEECCH-------------------HHH--ccCCEEEECCCCCHHHHHHH
Confidence            5788887664444   55688999999998887410                   122  26999999996322233344


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .+.+.++++++.++++|+.++|.|.. +|+++
T Consensus        57 ~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~   87 (200)
T PRK13143         57 LSPLRDVILEAARSGKPFLGICLGMQ-LLFES   87 (200)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence            56788999999999999999999766 68875

>PRK08250 glutamine amidotransferase; Provisional

Probab=97.87  E-value=9.2e-05  Score=67.32  Aligned_cols=94  Identities=15%  Similarity=0.212  Sum_probs=65.0

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc-cc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-LR   96 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~-~~   96 (405)
                      |||.|+....|...+.  +.+++++.|+++++..+..+.+        + |    .+  ..+||++||.||..+... ..
T Consensus         1 m~i~vi~h~~~e~~g~--~~~~~~~~g~~~~~~~~~~g~~--------~-p----~~--~~~~d~vii~GGp~~~~~~~~   63 (235)
T PRK08250          1 MRVHFIIHESFEAPGA--YLKWAENRGYDISYSRVYAGEA--------L-P----EN--ADGFDLLIVMGGPQSPRTTRE   63 (235)
T ss_pred             CeEEEEecCCCCCchH--HHHHHHHCCCeEEEEEccCCCC--------C-C----CC--ccccCEEEECCCCCChhhccc
Confidence            5788888888877765  4667788898888866544311        1 1    02  247999999999422221 11


Q ss_pred             cC-----hHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           97 DC-----EILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        97 ~~-----~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      +.     ....+||++++++++||.+||.|.. +|+.+
T Consensus        64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  100 (235)
T PRK08250         64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA  100 (235)
T ss_pred             cccccchHHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence            12     3568999999999999999999877 57653

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=97.86  E-value=2.9e-05  Score=65.68  Aligned_cols=85  Identities=21%  Similarity=0.162  Sum_probs=61.2

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcC-CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh-hhcc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAG-AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRL   95 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~-~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~-~~~~   95 (405)
                      ||||||.++|...+.+    +.+++++ .++..+                .   ...+++  ..|+||||||.+. ...+
T Consensus         1 m~IGVLalQG~v~EH~----~~l~~~~~~e~~~V----------------k---~~~dL~--~~d~LIiPGGESTTi~rL   55 (194)
T COG0311           1 MKIGVLALQGAVEEHL----EALEKAGGAEVVEV----------------K---RPEDLE--GVDGLIIPGGESTTIGRL   55 (194)
T ss_pred             CeEEEEEecccHHHHH----HHHHhhcCCceEEE----------------c---CHHHhc--cCcEEEecCccHHHHHHH
Confidence            5899999999887774    5555554 222222                1   112443  5899999999633 3556


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+...+.+-|+++..+|+|+.+.|.| ..+||+
T Consensus        56 ~~~~gl~e~l~~~~~~G~Pv~GTCAG-lIlLak   87 (194)
T COG0311          56 LKRYGLLEPLREFIADGLPVFGTCAG-LILLAK   87 (194)
T ss_pred             HHHcCcHHHHHHHHHcCCceEEechh-hhhhhh
Confidence            66778889999999999999999995 656775

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.86  E-value=8e-05  Score=65.39  Aligned_cols=92  Identities=24%  Similarity=0.369  Sum_probs=65.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCC---CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch--H
Q 015523          222 RVLIPIANGSEEIEIVTIVDILRRAK---VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--E  296 (405)
Q Consensus       222 ~V~il~~~g~~~~e~~~~~~~l~~~~---~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~--~  296 (405)
                      ||+|+..+....  .....+.|+..+   ++++++-...+             +. ..+.  .+||++++|||....  .
T Consensus         1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-------------~~-~~~~--~~~dgvil~Gg~~~~~~~   62 (188)
T cd01741           1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-------------EL-LPDL--DDYDGLVILGGPMSVDED   62 (188)
T ss_pred             CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-------------CC-CCCc--ccCCEEEECCCCccCCcc
Confidence            466776665543  556677777777   67777655543             00 2333  689999999996443  1


Q ss_pred             hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .....+.+.++|+++..+++++.+||.|..+|+.+
T Consensus        63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~   97 (188)
T cd01741          63 DYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA   97 (188)
T ss_pred             CChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            12223578999999999999999999999999875

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=97.85  E-value=4.5e-05  Score=64.51  Aligned_cols=85  Identities=27%  Similarity=0.286  Sum_probs=62.4

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCC-CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc-hHhh
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAK-VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-AERL  298 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~-~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~-~~~~  298 (405)
                      |+|+|+.++|-....+.    .+++++ .++..+                +   ..+++  .+.|+||+|||..- +..+
T Consensus         1 m~IGVLalQG~v~EH~~----~l~~~~~~e~~~V----------------k---~~~dL--~~~d~LIiPGGESTTi~rL   55 (194)
T COG0311           1 MKIGVLALQGAVEEHLE----ALEKAGGAEVVEV----------------K---RPEDL--EGVDGLIIPGGESTTIGRL   55 (194)
T ss_pred             CeEEEEEecccHHHHHH----HHHhhcCCceEEE----------------c---CHHHh--ccCcEEEecCccHHHHHHH
Confidence            68999999987666644    444443 222211                1   23444  66899999999632 2456


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      .+...+.+-|+++..+|+|+.+.|+|..+||+
T Consensus        56 ~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLak   87 (194)
T COG0311          56 LKRYGLLEPLREFIADGLPVFGTCAGLILLAK   87 (194)
T ss_pred             HHHcCcHHHHHHHHHcCCceEEechhhhhhhh
Confidence            67778999999999999999999999999997

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.85  E-value=8.9e-05  Score=74.14  Aligned_cols=90  Identities=19%  Similarity=0.154  Sum_probs=66.6

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh--hhcc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRL   95 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~--~~~~   95 (405)
                      .||+|.-.+=|+.. +..-++.|+..+.++..+++-..                 .+++  +||+|++|||++.  ...+
T Consensus       246 ~~iava~d~af~f~-y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l~--~~D~lilpGG~~~~~~~~l  305 (451)
T PRK01077        246 VRIAVARDAAFNFY-YPENLELLRAAGAELVFFSPLAD-----------------EALP--DCDGLYLGGGYPELFAAEL  305 (451)
T ss_pred             ceEEEEecCccccc-HHHHHHHHHHCCCEEEEeCCcCC-----------------CCCC--CCCEEEeCCCchhhHHHHH
Confidence            58999987733332 22235777888999998876432                 1233  6999999999754  3556


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ..+..+.+.|+++.+++++|.++|.|.+ +|++
T Consensus       306 ~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~  337 (451)
T PRK01077        306 AANTSMRASIRAAAAAGKPIYAECGGLM-YLGE  337 (451)
T ss_pred             hhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHh
Confidence            6778899999999999999999999754 5765

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=97.80  E-value=0.0001  Score=80.52  Aligned_cols=107  Identities=19%  Similarity=0.260  Sum_probs=75.4

Q ss_pred             CCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCc--eeEeccCcEEecCccc-CCCCCCcccEEEEcCCchh
Q 015523           16 FALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQL--EVEASSGTRLVADTSI-SNCSHQVFDLIALPGGMPG   91 (405)
Q Consensus        16 ~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~--~v~~~~g~~v~~~~~~-~~~~~~~~d~liipgg~~~   91 (405)
                      ..+||+|+.++|.+ +.|.   ...|.++|+++..+..+.-.  .+..  ++     ..+ .++  .+|++|++|||+..
T Consensus       976 ~kpkvaIl~~pGtNce~d~---a~Af~~aG~~~~~v~~~dl~~~~i~~--s~-----~~~~~~l--~~~~~l~~pGGFSy 1043 (1239)
T TIGR01857       976 EKPRVVIPVFPGTNSEYDS---AKAFEKEGAEVNLVIFRNLNEEALVE--SV-----ETMVDEI--DKSQILMLPGGFSA 1043 (1239)
T ss_pred             CCCeEEEEECCCCCCHHHH---HHHHHHcCCceEEEEEecCccccccc--ch-----hhhhccc--ccCcEEEEcCccCc
Confidence            45799999999988 5555   44555699998888754410  1110  00     011 223  37999999999743


Q ss_pred             hhcc----------ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCc
Q 015523           92 SVRL----------RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK  135 (405)
Q Consensus        92 ~~~~----------~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~  135 (405)
                      .+.+          ..++.+++-+++++++++++.+||+|-. +|.+.|||.+.
T Consensus      1044 GD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~~ 1096 (1239)
T TIGR01857      1044 GDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPYG 1096 (1239)
T ss_pred             ccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcCc
Confidence            3333          3357888999999999999999999766 79999999753

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.76  E-value=0.00022  Score=79.29  Aligned_cols=100  Identities=13%  Similarity=0.211  Sum_probs=75.7

Q ss_pred             CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-
Q 015523          219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  296 (405)
Q Consensus       219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-  296 (405)
                      ..+||+|+.++|. ++.|+..+   |..+||++..+..+.  .....           ..+  .+|+++++|||+...+ 
T Consensus      1034 ~~pkv~il~~pG~N~~~e~~~A---f~~aG~~~~~v~~~d--l~~~~-----------~~l--~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297       1034 ARPKVAILREQGVNSHVEMAAA---FDRAGFDAIDVHMSD--LLAGR-----------VTL--EDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred             CCCeEEEEECCCCCCHHHHHHH---HHHcCCCeEEEEeec--CcCCC-----------CCh--hhCcEEEECCccCCccc
Confidence            4589999999997 77776554   557999988777653  11110           123  7899999999974222 


Q ss_pred             ---------hhhcChHHHHHHHHHh-hcCCEEEEEchHHHHHHHcC-CCCC
Q 015523          297 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHG-LLKA  336 (405)
Q Consensus       297 ---------~~~~~~~l~~~l~~~~-~~~k~i~aic~g~~~La~aG-lL~g  336 (405)
                               .+..++.+.+.+++|+ ++++++.+||+|-.+|.+.| |+.+
T Consensus      1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297       1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred             chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence                     2345789999999977 88999999999999999998 7765

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=97.74  E-value=0.00011  Score=64.74  Aligned_cols=87  Identities=20%  Similarity=0.071  Sum_probs=60.2

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc--
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD--   97 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~--   97 (405)
                      |+++.|++.  .-+..+...++..++++.++++..+                   .  .++|+|++|||+.....+..  
T Consensus         1 ~~~~~y~~~--gN~~~l~~~~~~~G~~~~~~~~~~~-------------------~--~~~d~lilpGg~~~~~~~~~~~   57 (194)
T cd01750           1 IAVIRYPDI--SNFTDLDPLAREPGVDVRYVEVPEG-------------------L--GDADLIILPGSKDTIQDLAWLR   57 (194)
T ss_pred             CEeecCCCc--cCHHHHHHHHhcCCceEEEEeCCCC-------------------C--CCCCEEEECCCcchHHHHHHHH
Confidence            356666542  2234456677778899998876542                   2  36899999999522222222  


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  130 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag  130 (405)
                      +..+.+.|+++.++++||.++|.|.. +|++.-
T Consensus        58 ~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~~   89 (194)
T cd01750          58 KRGLAEAIKNYARAGGPVLGICGGYQ-MLGKYI   89 (194)
T ss_pred             HcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhhc
Confidence            45688999999999999999999765 677654

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK07053 glutamine amidotransferase; Provisional

Probab=97.74  E-value=0.00017  Score=65.45  Aligned_cols=95  Identities=14%  Similarity=0.035  Sum_probs=65.2

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc--
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR--   94 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~--   94 (405)
                      ||+|.|+-  +.....+..+.+.|++.+++++++.+..+ .        ..    ..+.  .+||++||+||..+...  
T Consensus         2 m~~ilviq--h~~~e~~g~i~~~L~~~g~~~~v~~~~~~-~--------~~----~~~~--~~~d~lii~Ggp~~~~d~~   64 (234)
T PRK07053          2 MKTAVAIR--HVAFEDLGSFEQVLGARGYRVRYVDVGVD-D--------LE----TLDA--LEPDLLVVLGGPIGVYDDE   64 (234)
T ss_pred             CceEEEEE--CCCCCCChHHHHHHHHCCCeEEEEecCCC-c--------cC----CCCc--cCCCEEEECCCCCCCCCCC
Confidence            56665554  44555666689999999999998876543 1        10    1122  36999999998422211  


Q ss_pred             -cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           95 -LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        95 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                       ..-...+.++|+++.+.++|+.+||.|.. +|+.+
T Consensus        65 ~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a   99 (234)
T PRK07053         65 LYPFLAPEIALLRQRLAAGLPTLGICLGAQ-LIARA   99 (234)
T ss_pred             cCCcHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence             11224678999999999999999999876 57754

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=97.73  E-value=8.9e-05  Score=64.77  Aligned_cols=84  Identities=18%  Similarity=0.104  Sum_probs=62.6

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hccccC
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRLRDC   98 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~~~~   98 (405)
                      |+||+.+|......    +.|++.++++..+.+..                   +.  .++|.+++|||.... .....+
T Consensus         1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~   55 (183)
T cd01749           1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR   55 (183)
T ss_pred             CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence            68888888776554    88999999999887632                   12  369999999994221 222234


Q ss_pred             hHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           99 EILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ..+.++|+++.++++|+.++|.|.. +|++.
T Consensus        56 ~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~~   85 (183)
T cd01749          56 TGLLDPLREFIRAGKPVFGTCAGLI-LLAKE   85 (183)
T ss_pred             CCHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            5678999999999999999999655 67753

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.73  E-value=0.00014  Score=64.83  Aligned_cols=87  Identities=16%  Similarity=0.209  Sum_probs=62.0

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCcc-c--hH
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA-G--AE  296 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~-~--~~  296 (405)
                      |++|+|+-|..-+..+   ....|++.|+++.++...                   +++  .++|.||+||+-. .  +.
T Consensus         1 ~~~v~iid~~~GN~~s---l~~al~~~g~~v~vv~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~   56 (210)
T CHL00188          1 MMKIGIIDYSMGNLHS---VSRAIQQAGQQPCIINSE-------------------SEL--AQVHALVLPGVGSFDLAMK   56 (210)
T ss_pred             CcEEEEEEcCCccHHH---HHHHHHHcCCcEEEEcCH-------------------HHh--hhCCEEEECCCCchHHHHH
Confidence            5789999998656555   466677788888877421                   122  4589999999432 1  12


Q ss_pred             hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+. ...+.+.|+++.++++++.+||.|..+|++.
T Consensus        57 ~l~-~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~   90 (210)
T CHL00188         57 KLE-KKGLITPIKKWIAEGNPFIGICLGLHLLFET   90 (210)
T ss_pred             HHH-HCCHHHHHHHHHHcCCCEEEECHHHHHHhhc
Confidence            222 2346677888888999999999999999975

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.68  E-value=7.1e-05  Score=63.73  Aligned_cols=53  Identities=30%  Similarity=0.306  Sum_probs=45.5

Q ss_pred             CCCCccEEEEcCCccchH--hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          279 AESVYDLIILPGGVAGAE--RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       279 ~~~~~D~livpgG~~~~~--~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .++++|+|++|||+....  .+.++..+.+.|+++.++|++|.++|.|-.+|.+.
T Consensus         4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~   58 (158)
T PF07685_consen    4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGES   58 (158)
T ss_pred             CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHH
Confidence            457899999999985433  25567889999999999999999999999999885

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK06490 glutamine amidotransferase; Provisional

Probab=97.65  E-value=0.00037  Score=63.46  Aligned_cols=96  Identities=13%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      .++||.||.-.+++...  .+.+.|+..|++++++.+..+             +...+++  .+||.++|.||..+....
T Consensus         6 ~~~~vlvi~h~~~~~~g--~l~~~l~~~g~~~~v~~~~~~-------------~~~p~~l--~~~dgvii~Ggp~~~~d~   68 (239)
T PRK06490          6 DKRPVLIVLHQERSTPG--RVGQLLQERGYPLDIRRPRLG-------------DPLPDTL--EDHAGAVIFGGPMSANDP   68 (239)
T ss_pred             CCceEEEEecCCCCCCh--HHHHHHHHCCCceEEEeccCC-------------CCCCCcc--cccCEEEEECCCCCCCCC
Confidence            46899988766554444  367888899999998876543             0011233  679999999986443221


Q ss_pred             -hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 -QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 -~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       .-...+++||+++...++++.+||-|..+|+.+
T Consensus        69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a  102 (239)
T PRK06490         69 DDFIRREIDWISVPLKENKPFLGICLGAQMLARH  102 (239)
T ss_pred             chHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence             112457899999999999999999999999987

>PHA03366 FGAM-synthase; Provisional

Probab=97.61  E-value=0.00052  Score=76.29  Aligned_cols=98  Identities=11%  Similarity=0.090  Sum_probs=75.9

Q ss_pred             CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-
Q 015523          219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  296 (405)
Q Consensus       219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-  296 (405)
                      ..+||+|+.++|. .+.|+..   .|.++||++..+..+.=  ..        .+ .     .++|+.|++|||+...+ 
T Consensus      1027 ~~prVaIl~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dL--~~--------~~-~-----l~~f~glv~~GGFS~gD~ 1087 (1304)
T PHA03366       1027 KRHRVAVLLLPGCPGPHALLA---AFTNAGFDPYPVSIEEL--KD--------GT-F-----LDEFSGLVIGGSSGAEDS 1087 (1304)
T ss_pred             CCCeEEEEECCCCCCHHHHHH---HHHHcCCceEEEEeecC--CC--------CC-c-----cccceEEEEcCCCCCccc
Confidence            4689999999998 6777554   45569999888876541  00        01 1     26789999999985322 


Q ss_pred             ---------hhhcChHHHHHHHHHh-hcCCEEEEEch-HHHHHHHcCCCC
Q 015523          297 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCS-SPIVLHKHGLLK  335 (405)
Q Consensus       297 ---------~~~~~~~l~~~l~~~~-~~~k~i~aic~-g~~~La~aGlL~  335 (405)
                               .+..++.+.+.+++|+ +.++++.+||+ |-.+|.+.|++.
T Consensus      1088 l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366       1088 YTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred             ccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence                     2457889999999999 67999999999 999999999994

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.59  E-value=0.00049  Score=61.44  Aligned_cols=91  Identities=22%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh--
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--  297 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~--  297 (405)
                      ||||+|+-|..-+..++   ...|++.|+++++.-.+                 ..+++  .++|.||+||+......  
T Consensus         1 ~~~~~iid~g~gn~~s~---~~al~~~g~~~~v~~~~-----------------~~~~l--~~~d~lIlpG~~~~~~~~~   58 (209)
T PRK13146          1 MMTVAIIDYGSGNLRSA---AKALERAGAGADVVVTA-----------------DPDAV--AAADRVVLPGVGAFADCMR   58 (209)
T ss_pred             CCeEEEEECCCChHHHH---HHHHHHcCCCccEEEEC-----------------CHHHh--cCCCEEEECCCCcHHHHHH
Confidence            57999998887666665   46666777743222111                 11333  67999999997422221  


Q ss_pred             -hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523          298 -LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  332 (405)
Q Consensus       298 -~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG  332 (405)
                       +........+++.....++++.+||.|..+|+.++
T Consensus        59 ~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~   94 (209)
T PRK13146         59 GLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG   94 (209)
T ss_pred             HHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence             22222233445545578999999999999999983

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.58  E-value=0.00024  Score=63.27  Aligned_cols=85  Identities=21%  Similarity=0.244  Sum_probs=59.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh--hc
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK  300 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~--~~  300 (405)
                      |+|+-+.+-+.   ..+.+.|++.|+.++++..                   .+++  .+||.+|+|||.......  ..
T Consensus         2 i~~~d~~~~~~---~~i~~~l~~~G~~v~~~~~-------------------~~~l--~~~d~iiipG~~~~~~~~~~~~   57 (205)
T PRK13141          2 IAIIDYGMGNL---RSVEKALERLGAEAVITSD-------------------PEEI--LAADGVILPGVGAFPDAMANLR   57 (205)
T ss_pred             EEEEEcCCchH---HHHHHHHHHCCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence            44554543333   5578889999988888531                   1233  579999999964212221  12


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ...+.++|+++..+++++.+||.|..+|+..
T Consensus        58 ~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~   88 (205)
T PRK13141         58 ERGLDEVIKEAVASGKPLLGICLGMQLLFES   88 (205)
T ss_pred             HcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence            2357899999999999999999999999986

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.58  E-value=0.00042  Score=69.25  Aligned_cols=92  Identities=16%  Similarity=0.187  Sum_probs=69.3

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch--Hh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--ER  297 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~--~~  297 (405)
                      ..||+|+-.+-|+..= ..=++.|++.|+++..+++-.+                 +++  +++|+|++|||....  ..
T Consensus       244 ~~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l--~~~d~l~ipGG~~~~~~~~  303 (449)
T TIGR00379       244 YVRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TEL--PDVDAVYIGGGFPELFAEE  303 (449)
T ss_pred             CcEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCC--CCCCEEEeCCcHHHHHHHH
Confidence            3689999887666521 2234566678999998887542                 223  368999999998422  23


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus       304 l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~  337 (449)
T TIGR00379       304 LSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS  337 (449)
T ss_pred             HHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            5567789999999999999999999999999874

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.58  E-value=0.00035  Score=61.33  Aligned_cols=92  Identities=17%  Similarity=0.195  Sum_probs=62.5

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcC---CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh--h
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAG---AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--V   93 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~---~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~--~   93 (405)
                      ||+||..+....  .....++|++.+   ++++.+-...+. .             ..+.  .+||++|+|||....  .
T Consensus         1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~~-~-------------~~~~--~~~dgvil~Gg~~~~~~~   62 (188)
T cd01741           1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAGE-L-------------LPDL--DDYDGLVILGGPMSVDED   62 (188)
T ss_pred             CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCCC-C-------------CCCc--ccCCEEEECCCCccCCcc
Confidence            477777665544  566778888887   677776655431 0             1223  379999999995322  1


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .....+.+.++|+.+.++++++.++|.|.. +|+.+
T Consensus        63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~   97 (188)
T cd01741          63 DYPWLKKLKELIRQALAAGKPVLGICLGHQ-LLARA   97 (188)
T ss_pred             CChHHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence            111225688999999999999999999765 56653

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=97.57  E-value=0.00062  Score=75.33  Aligned_cols=99  Identities=12%  Similarity=0.087  Sum_probs=75.8

Q ss_pred             CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-
Q 015523          219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  296 (405)
Q Consensus       219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-  296 (405)
                      ..+||+|+.++|. ++.|+..   .|.++||++..+..+.=  ...        + .     ..+|++|++|||....+ 
T Consensus       928 ~~p~VaIl~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dl--~~~--------~-~-----l~~f~glv~~Ggfsy~D~  988 (1202)
T TIGR01739       928 PRHQVAVLLLPGQSVPHGLLA---ALTNAGFDPRIVSITEL--KKT--------D-F-----LDTFSGLIIGGASGTLDS  988 (1202)
T ss_pred             CCCeEEEEeCCCCCCHHHHHH---HHHHcCCceEEEEeccC--CCC--------C-c-----hhheEEEEEcCcCCCCcc
Confidence            4689999999997 6777554   45569999888876651  110        0 1     14789999999875222 


Q ss_pred             ---------hhhcChHHHHHHHHHh-hcCCEEEEEch-HHHHHHHcCCCCC
Q 015523          297 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCS-SPIVLHKHGLLKA  336 (405)
Q Consensus       297 ---------~~~~~~~l~~~l~~~~-~~~k~i~aic~-g~~~La~aGlL~g  336 (405)
                               .+..++.+.+.+++|+ +.++++.+||+ |-.+|.+.|++..
T Consensus       989 lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739       989 EVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred             chHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence                     2456889999999999 66999999999 9999999999853

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK05665 amidotransferase; Provisional

Probab=97.53  E-value=0.0011  Score=60.50  Aligned_cols=51  Identities=20%  Similarity=0.143  Sum_probs=41.2

Q ss_pred             CCccEEEEcCCccchHh-hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          281 SVYDLIILPGGVAGAER-LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       281 ~~~D~livpgG~~~~~~-~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+||++||.||..+... ..--..+.+||+++..+++++.+||-|..+||.+
T Consensus        56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A  107 (240)
T PRK05665         56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL  107 (240)
T ss_pred             ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence            57999999999654322 1122578899999999999999999999999876

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=97.52  E-value=0.00043  Score=60.15  Aligned_cols=75  Identities=15%  Similarity=0.071  Sum_probs=56.7

Q ss_pred             HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523          238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  317 (405)
Q Consensus       238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~  317 (405)
                      ...+.|++.|+.+.++..+..                .++.+..+||+|+++||.....   ......++++++.++++|
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P   71 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP   71 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence            457888888998888865531                1222225799999999964333   346788899999999999


Q ss_pred             EEEEchHHHHHHHc
Q 015523          318 YGAVCSSPIVLHKH  331 (405)
Q Consensus       318 i~aic~g~~~La~a  331 (405)
                      |.+||.|..+|+.+
T Consensus        72 vlGIC~G~Q~l~~~   85 (178)
T cd01744          72 IFGICLGHQLLALA   85 (178)
T ss_pred             EEEECHHHHHHHHH
Confidence            99999999999875

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.52  E-value=0.0005  Score=75.92  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=74.3

Q ss_pred             CCCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           15 SFALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        15 ~~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      ...+||+|+.++|.+ +.|.   ...|..+||++..+..+.-  ..+             .....+|++|++|||+...+
T Consensus      1035 ~~~pkVaVl~~pGtN~~~e~---~~Af~~aGf~~~~V~~~dl--~~~-------------~~~L~~~~glv~pGGFSyGD 1096 (1307)
T PLN03206       1035 TSKPKVAIIREEGSNGDREM---AAAFYAAGFEPWDVTMSDL--LNG-------------RISLDDFRGIVFVGGFSYAD 1096 (1307)
T ss_pred             CCCCeEEEEECCCCCCHHHH---HHHHHHcCCceEEEEeeec--ccc-------------cccccceeEEEEcCcCCCcc
Confidence            345799999999988 4554   5566688999887765531  110             11124799999999963222


Q ss_pred             ----------ccccChHHHHHHHHHH-HcCCEEEEEccchHHhhhhcCCCCCcc
Q 015523           94 ----------RLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPWGLLRRKQ  136 (405)
Q Consensus        94 ----------~~~~~~~~~~~l~~~~-~~~~~i~aic~g~~~~La~agll~g~~  136 (405)
                                ....++.+++.+++|+ +.++++.+||+|-. +|.+.|+|.|-+
T Consensus      1097 ~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQ-iL~~lgllPg~~ 1149 (1307)
T PLN03206       1097 VLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQ-LMALLGWVPGPQ 1149 (1307)
T ss_pred             ccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHH-HHHHcCCCCCCc
Confidence                      2334678899999999 55999999999766 799999998753

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=97.43  E-value=0.00054  Score=76.09  Aligned_cols=101  Identities=13%  Similarity=0.065  Sum_probs=73.3

Q ss_pred             CCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           16 FALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      +.+||+|+.++|.+ +.|.   ...|..+||++..+..+.-  ..             ......+|++|++|||+...+.
T Consensus      1054 ~~p~vail~~pG~N~~~e~---~~Af~~aGf~~~~v~~~dl--~~-------------~~~~l~~~~~lv~~GGFSygD~ 1115 (1310)
T TIGR01735      1054 VRPKVAILREQGVNGDREM---AAAFDRAGFEAWDVHMSDL--LA-------------GRVHLDEFRGLAACGGFSYGDV 1115 (1310)
T ss_pred             CCceEEEEECCCCCCHHHH---HHHHHHhCCCcEEEEEecc--cc-------------CCcchhheeEEEEcCCCCCccc
Confidence            45699999999988 4554   3466688998888875441  00             0112236999999999632222


Q ss_pred             ----------cccChHHHHHHHHHH-HcCCEEEEEccchHHhhh-hcCCCCCc
Q 015523           95 ----------LRDCEILKKITSKQA-EEKRLYGAICAAPAVTLL-PWGLLRRK  135 (405)
Q Consensus        95 ----------~~~~~~~~~~l~~~~-~~~~~i~aic~g~~~~La-~agll~g~  135 (405)
                                ...++.+++.+++|+ +.++++.+||+|-. +|. +.|++.|.
T Consensus      1116 lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1116 LGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPGT 1167 (1310)
T ss_pred             hhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCCC
Confidence                      334678899999999 88999999999877 677 99999864

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=97.43  E-value=0.00076  Score=59.27  Aligned_cols=87  Identities=20%  Similarity=0.303  Sum_probs=61.6

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      |||+|+  |..+... ..+.+.|++.|++++++..+..               ..+++  ..+|.||+.||.....   .
T Consensus         2 ~~ilii--d~~dsf~-~~i~~~l~~~g~~~~v~~~~~~---------------~~~~l--~~~d~iIi~gGp~~~~---~   58 (190)
T PRK06895          2 TKLLII--NNHDSFT-FNLVDLIRKLGVPMQVVNVEDL---------------DLDEV--ENFSHILISPGPDVPR---A   58 (190)
T ss_pred             cEEEEE--eCCCchH-HHHHHHHHHcCCcEEEEECCcc---------------ChhHh--ccCCEEEECCCCCChH---H
Confidence            455555  4433333 4489999999999998876542               12333  4689999888864322   2


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+.+.++|++ .+.++|+.+||-|..+|+.+
T Consensus        59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~   88 (190)
T PRK06895         59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEF   88 (190)
T ss_pred             hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            3467788886 67899999999999999876

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.42  E-value=0.0024  Score=61.70  Aligned_cols=144  Identities=17%  Similarity=0.136  Sum_probs=96.3

Q ss_pred             CeEcCCCc---ccHHHHHHHHHHHhcChHHHHHHHHhcccccccCcccccccccc-ccccCCcCEEEEEeCCCCcHHHHH
Q 015523          162 EVTTSRGP---GTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEV-EWFFDRMPRVLIPIANGSEEIEIV  237 (405)
Q Consensus       162 ~iiT~~g~---~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~V~il~~~g~~~~e~~  237 (405)
                      +++++.-.   ...++-+-.++++...-+.-..+++.=.    +.   ...+.+. +.......||+|.--.-|+.. +-
T Consensus       190 GLV~a~E~~~~~~~~~~~a~~v~~~vDld~l~~ia~~~~----~~---~~~~~~~~~~~~~~~~rIAVA~D~AF~Fy-Y~  261 (451)
T COG1797         190 GLVPASERLELEAKLEALAEVVEKHVDLDALLEIASSAG----PL---EPDLSPEPERGNPLGVRIAVARDAAFNFY-YP  261 (451)
T ss_pred             ccccchhhhhHHHHHHHHHHHHHhhCCHHHHHHHHhccC----CC---CCCccccccccCCcCceEEEEecchhccc-cH
Confidence            35555432   3345666677777777776666664210    00   1111111 111112368998865544332 23


Q ss_pred             HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch--HhhhcChHHHHHHHHHhhcC
Q 015523          238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--ERLQKSRILKKLLKEQKVAG  315 (405)
Q Consensus       238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~--~~~~~~~~l~~~l~~~~~~~  315 (405)
                      .-++.|+..|+++...||-.+                 +++ |++.|+|++|||++..  ..+..++..++.|+++...|
T Consensus       262 ~nl~~Lr~~GAelv~FSPL~D-----------------~~l-P~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G  323 (451)
T COG1797         262 ENLELLREAGAELVFFSPLAD-----------------EEL-PPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAG  323 (451)
T ss_pred             HHHHHHHHCCCEEEEeCCcCC-----------------CCC-CCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcC
Confidence            367899999999999998764                 333 2358999999999643  45788999999999999999


Q ss_pred             CEEEEEchHHHHHHHc
Q 015523          316 RIYGAVCSSPIVLHKH  331 (405)
Q Consensus       316 k~i~aic~g~~~La~a  331 (405)
                      ++|.+=|.|-+.|.+.
T Consensus       324 ~piyaECGGlMYL~~~  339 (451)
T COG1797         324 KPIYAECGGLMYLGES  339 (451)
T ss_pred             CceEEecccceeehhh
Confidence            9999999999999864

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.41  E-value=0.0005  Score=61.30  Aligned_cols=87  Identities=16%  Similarity=0.121  Sum_probs=59.6

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch-h--hh
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP-G--SV   93 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~-~--~~   93 (405)
                      ++||+|+-|..-+..+   +.+.|++.++++.++....                   ++.  ++|.||+||+.. .  ..
T Consensus         1 ~~~v~iid~~~GN~~s---l~~al~~~g~~v~vv~~~~-------------------~l~--~~d~iIlPG~g~~~~~~~   56 (210)
T CHL00188          1 MMKIGIIDYSMGNLHS---VSRAIQQAGQQPCIINSES-------------------ELA--QVHALVLPGVGSFDLAMK   56 (210)
T ss_pred             CcEEEEEEcCCccHHH---HHHHHHHcCCcEEEEcCHH-------------------Hhh--hCCEEEECCCCchHHHHH
Confidence            4689999988555544   4777888899888884211                   222  589999999421 1  11


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .+. ...+.+.|+++.++++|+.+||.|-. +|++.
T Consensus        57 ~l~-~~gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~   90 (210)
T CHL00188         57 KLE-KKGLITPIKKWIAEGNPFIGICLGLH-LLFET   90 (210)
T ss_pred             HHH-HCCHHHHHHHHHHcCCCEEEECHHHH-HHhhc
Confidence            121 23466778888899999999999755 67764

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.33  E-value=0.0011  Score=73.98  Aligned_cols=100  Identities=11%  Similarity=0.072  Sum_probs=71.9

Q ss_pred             CCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           16 FALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      .+.||+|+.++|.+ +.|.   ...|+.+||++..+..+.-  ....           ..+  .+|+++++|||+...+.
T Consensus      1034 ~~pkv~il~~pG~N~~~e~---~~Af~~aG~~~~~v~~~dl--~~~~-----------~~l--~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297       1034 ARPKVAILREQGVNSHVEM---AAAFDRAGFDAIDVHMSDL--LAGR-----------VTL--EDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred             CCCeEEEEECCCCCCHHHH---HHHHHHcCCCeEEEEeecC--cCCC-----------CCh--hhCcEEEECCccCCccc
Confidence            35699999999988 4454   5566689999888775541  1000           123  47999999999633222


Q ss_pred             ----------cccChHHHHHHHHHH-HcCCEEEEEccchHHhhhhcC-CCCC
Q 015523           95 ----------LRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPWG-LLRR  134 (405)
Q Consensus        95 ----------~~~~~~~~~~l~~~~-~~~~~i~aic~g~~~~La~ag-ll~g  134 (405)
                                +..++.+++.+++|+ ++++++.+||+|-. +|.+.| ++.+
T Consensus      1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg~l~p~ 1146 (1290)
T PRK05297       1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLKEIIPG 1146 (1290)
T ss_pred             chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhCCccCC
Confidence                      234578889999977 78899999999766 799998 7655

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.29  E-value=0.002  Score=58.68  Aligned_cols=96  Identities=19%  Similarity=0.166  Sum_probs=62.4

Q ss_pred             cCEEEEEeCCCCcH--H-HHHHHHHH----HHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCc
Q 015523          220 MPRVLIPIANGSEE--I-EIVTIVDI----LRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV  292 (405)
Q Consensus       220 ~~~V~il~~~g~~~--~-e~~~~~~~----l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~  292 (405)
                      |++++||..+.-.+  . ......+.    |...+.+++++.+..+              ..+.+.  .+||++||.||.
T Consensus         1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p~~--~~~dgvvi~Gg~   64 (237)
T PRK09065          1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAG--------------EPLPAP--DDFAGVIITGSW   64 (237)
T ss_pred             CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCC--------------CCCCCh--hhcCEEEEeCCC
Confidence            56788887664322  1 12223333    3345677777655543              112333  679999999996


Q ss_pred             cchHh-hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          293 AGAER-LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       293 ~~~~~-~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..... ..-...+.++|+++.+.+++|.+||-|..+|+.+
T Consensus        65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  104 (237)
T PRK09065         65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA  104 (237)
T ss_pred             cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence            43221 1122567899999999999999999999999876

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.29  E-value=0.0013  Score=63.56  Aligned_cols=91  Identities=20%  Similarity=0.202  Sum_probs=70.1

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh--hhcc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRL   95 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~--~~~~   95 (405)
                      .||+|-. |..-..=+-.-++.|+..|+++...||-.+                 +++| .+.|++++|||++.  ...+
T Consensus       246 ~rIAVA~-D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D-----------------~~lP-~~~D~vYlgGGYPElfA~~L  306 (451)
T COG1797         246 VRIAVAR-DAAFNFYYPENLELLREAGAELVFFSPLAD-----------------EELP-PDVDAVYLGGGYPELFAEEL  306 (451)
T ss_pred             ceEEEEe-cchhccccHHHHHHHHHCCCEEEEeCCcCC-----------------CCCC-CCCCEEEeCCCChHHHHHHH
Confidence            5899874 422222233447899999999999998775                 2444 35899999999864  3667


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+++.+++.|++++..|++|.+=|.| ..+|.+
T Consensus       307 ~~n~~~~~~i~~~~~~G~piyaECGG-lMYL~~  338 (451)
T COG1797         307 SANESMRRAIKAFAAAGKPIYAECGG-LMYLGE  338 (451)
T ss_pred             hhCHHHHHHHHHHHHcCCceEEeccc-ceeehh
Confidence            88999999999999999999999995 546664

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.20  E-value=0.0019  Score=64.53  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=65.7

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh--hcc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--VRL   95 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~--~~~   95 (405)
                      .||+|.-.+-|+..= ..=++.|++.++++..+++-.+                 ++++  ++|+|++|||++..  ..+
T Consensus       245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l~--~~d~l~ipGG~~~~~~~~l  304 (449)
T TIGR00379       245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TELP--DVDAVYIGGGFPELFAEEL  304 (449)
T ss_pred             cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCCC--CCCEEEeCCcHHHHHHHHH
Confidence            589999876554410 2224667778999999887543                 1233  68999999997432  335


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ..+..+.+.|+++.++|.+|.++|.| ..+|++.
T Consensus       305 ~~~~~~~~~i~~~~~~G~pv~g~CgG-~~~L~~~  337 (449)
T TIGR00379       305 SQNQALRDSIKTFIHQGLPIYGECGG-LMYLSQS  337 (449)
T ss_pred             HhhhHHHHHHHHHHHcCCCEEEEcHH-HHHHHhh
Confidence            55778899999999999999999995 5467764

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.19  E-value=0.00051  Score=58.47  Aligned_cols=51  Identities=29%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             CcccEEEEcCCchhh--hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           78 QVFDLIALPGGMPGS--VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        78 ~~~d~liipgg~~~~--~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .++|+|++|||++..  ..+.++..+.+.|+++.+++++|.++|.| ..+|.+.
T Consensus         6 ~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG-~~~Lg~~   58 (158)
T PF07685_consen    6 PDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG-YQYLGES   58 (158)
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH-HHHHHHH
Confidence            479999999997433  33456778999999999999999999995 5567753

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.19  E-value=0.00085  Score=59.75  Aligned_cols=85  Identities=15%  Similarity=0.067  Sum_probs=58.3

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc--cc
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RD   97 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~--~~   97 (405)
                      |.|+-+.   ......+.+.|++.|.+++++...                   .++  .+||.+|+|||.......  ..
T Consensus         2 i~~~d~~---~~~~~~i~~~l~~~G~~v~~~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~   57 (205)
T PRK13141          2 IAIIDYG---MGNLRSVEKALERLGAEAVITSDP-------------------EEI--LAADGVILPGVGAFPDAMANLR   57 (205)
T ss_pred             EEEEEcC---CchHHHHHHHHHHCCCeEEEECCH-------------------HHh--ccCCEEEECCCCchHHHHHHHH
Confidence            4444444   344577789999999999886311                   123  269999999963212211  11


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ...+.++|+++.++++|+.++|.|.+ +|++.
T Consensus        58 ~~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~   88 (205)
T PRK13141         58 ERGLDEVIKEAVASGKPLLGICLGMQ-LLFES   88 (205)
T ss_pred             HcChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence            23578899999999999999999766 68875

>PRK05665 amidotransferase; Provisional

Probab=97.19  E-value=0.0035  Score=57.14  Aligned_cols=50  Identities=20%  Similarity=0.104  Sum_probs=36.9

Q ss_pred             cccEEEEcCCchhhhc-cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           79 VFDLIALPGGMPGSVR-LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        79 ~~d~liipgg~~~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      +||++||.||..+... ..-...+.+||++++++++|+.+||-|.. +|+.+
T Consensus        57 ~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A  107 (240)
T PRK05665         57 KFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQ-LLALL  107 (240)
T ss_pred             cCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence            6999999999422211 11124678999999999999999999766 57653

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.14  E-value=0.00054  Score=58.71  Aligned_cols=50  Identities=28%  Similarity=0.366  Sum_probs=38.9

Q ss_pred             CCccEEEEcCCccc-hHhhhcChHHHHHHHHHhhcC-CEEEEEchHHHHHHH
Q 015523          281 SVYDLIILPGGVAG-AERLQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHK  330 (405)
Q Consensus       281 ~~~D~livpgG~~~-~~~~~~~~~l~~~l~~~~~~~-k~i~aic~g~~~La~  330 (405)
                      .+.|.||+|||-.- +..+.+...+.+.|+++.++| +||.+.|+|..+|++
T Consensus        32 ~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~   83 (188)
T PF01174_consen   32 EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAK   83 (188)
T ss_dssp             TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEE
T ss_pred             ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhh
Confidence            56799999999632 234666778999999999998 999999999999987

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PHA03366 FGAM-synthase; Provisional

Probab=97.12  E-value=0.0034  Score=69.96  Aligned_cols=100  Identities=11%  Similarity=0.012  Sum_probs=73.9

Q ss_pred             CCCcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           15 SFALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        15 ~~~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      ....||+|+.++|.+ +.|.   ...|..+||++..+.-+.-           ...    .. ..+|+.|++|||+...+
T Consensus      1026 ~~~prVaIl~~pG~N~~~e~---~~Af~~aGf~~~~v~~~dL-----------~~~----~~-l~~f~glv~~GGFS~gD 1086 (1304)
T PHA03366       1026 DKRHRVAVLLLPGCPGPHAL---LAAFTNAGFDPYPVSIEEL-----------KDG----TF-LDEFSGLVIGGSSGAED 1086 (1304)
T ss_pred             CCCCeEEEEECCCCCCHHHH---HHHHHHcCCceEEEEeecC-----------CCC----Cc-cccceEEEEcCCCCCcc
Confidence            345699999999988 4444   5566779999988876541           000    11 23799999999974322


Q ss_pred             c----------cccChHHHHHHHHHH-HcCCEEEEEcc-chHHhhhhcCCCCC
Q 015523           94 R----------LRDCEILKKITSKQA-EEKRLYGAICA-APAVTLLPWGLLRR  134 (405)
Q Consensus        94 ~----------~~~~~~~~~~l~~~~-~~~~~i~aic~-g~~~~La~agll~g  134 (405)
                      .          ...++.+++.+++|+ +.++.+.+||+ |-. +|.+.|++.+
T Consensus      1087 ~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll~~ 1138 (1304)
T PHA03366       1087 SYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAVGS 1138 (1304)
T ss_pred             cccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCccC
Confidence            2          235788999999999 55999999999 988 7999999943

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=97.11  E-value=0.0012  Score=54.74  Aligned_cols=98  Identities=11%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             eccCCCCCcEEEEEecCCCchhhHHHHHHHHHhcCCE--EEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC
Q 015523           10 SFISPSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQ--VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG   87 (405)
Q Consensus        10 s~~~~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~--v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg   87 (405)
                      +.|....+.-||+|..+|.-.+.....-.-+....|.  +++...+                 +-.|+.  +.|++||||
T Consensus         4 asM~GKtn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVK-----------------T~~D~a--q~DaLIIPG   64 (226)
T KOG3210|consen    4 ASMTGKTNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVK-----------------TKNDLA--QCDALIIPG   64 (226)
T ss_pred             ccccCCcceEEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeec-----------------CHHHHh--hCCEEEecC
Confidence            4555556678999999987666644333333333232  2222222                 223443  689999999


Q ss_pred             Cchhh-hccccChHHHHHHHHHHHcC-CEEEEEccchHHhhh
Q 015523           88 GMPGS-VRLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLL  127 (405)
Q Consensus        88 g~~~~-~~~~~~~~~~~~l~~~~~~~-~~i~aic~g~~~~La  127 (405)
                      |.... ..+.+-..+..-|.++..++ +++.+.|.| ..+|.
T Consensus        65 GEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAG-mI~LS  105 (226)
T KOG3210|consen   65 GESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAG-MIYLS  105 (226)
T ss_pred             CchhHHHHHHhhhhhHHHHHHHhcCCCccceeechh-hhhhh
Confidence            96433 22334455888888888888 999999995 54444

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=97.11  E-value=0.00073  Score=59.81  Aligned_cols=74  Identities=24%  Similarity=0.333  Sum_probs=54.6

Q ss_pred             HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh--hhcChHHHHHHHHHhhc
Q 015523          237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--LQKSRILKKLLKEQKVA  314 (405)
Q Consensus       237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~--~~~~~~l~~~l~~~~~~  314 (405)
                      ....+.|++.|++++++...                   +++  .++|+|++|||......  ......+.++++++.++
T Consensus        12 ~~~~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~   70 (198)
T cd01748          12 RSVANALERLGAEVIITSDP-------------------EEI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAIAS   70 (198)
T ss_pred             HHHHHHHHHCCCeEEEEcCh-------------------HHh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHC
Confidence            34578888899988887521                   123  56899999996321111  12334578999999999


Q ss_pred             CCEEEEEchHHHHHHHc
Q 015523          315 GRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       315 ~k~i~aic~g~~~La~a  331 (405)
                      +++|.+||.|..+|+.+
T Consensus        71 ~~pilGiC~G~q~l~~~   87 (198)
T cd01748          71 GKPFLGICLGMQLLFES   87 (198)
T ss_pred             CCcEEEECHHHHHhccc
Confidence            99999999999999997

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK00784 cobyric acid synthase; Provisional

Probab=97.10  E-value=0.0019  Score=65.39  Aligned_cols=87  Identities=21%  Similarity=0.184  Sum_probs=65.6

Q ss_pred             cCEEEEEeCC-CCcHHHHHHHHHHHHh-CCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          220 MPRVLIPIAN-GSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       220 ~~~V~il~~~-g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      +.||+|+-+| -|+.    .=++.|.. .|+++.++++..                   ++  +++|+|++|||......
T Consensus       251 ~~~i~v~~~~~a~~f----~nl~~l~~~~g~~v~~~s~~~-------------------~l--~~~d~lilpGg~~~~~~  305 (488)
T PRK00784        251 ALRIAVIRLPRISNF----TDFDPLRAEPGVDVRYVRPGE-------------------PL--PDADLVILPGSKNTIAD  305 (488)
T ss_pred             ceEEEEEeCCCcCCc----cChHHHhhcCCCeEEEECCcc-------------------cc--ccCCEEEECCccchHHH
Confidence            3589999977 3454    34566776 888888886532                   22  46899999999743332


Q ss_pred             --hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 --LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 --~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                        +..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus       306 ~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~  341 (488)
T PRK00784        306 LAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR  341 (488)
T ss_pred             HHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence              3355568899999999999999999999999873

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.07  E-value=0.0018  Score=55.57  Aligned_cols=49  Identities=18%  Similarity=0.132  Sum_probs=36.2

Q ss_pred             cccEEEEcCCchh-hhccccChHHHHHHHHHHHcC-CEEEEEccchHHhhhh
Q 015523           79 VFDLIALPGGMPG-SVRLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLLP  128 (405)
Q Consensus        79 ~~d~liipgg~~~-~~~~~~~~~~~~~l~~~~~~~-~~i~aic~g~~~~La~  128 (405)
                      +.|.||||||... ...+.....+.+-|+++..++ +||.+.|.| ..+||+
T Consensus        33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAG-lIlLa~   83 (188)
T PF01174_consen   33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAG-LILLAK   83 (188)
T ss_dssp             T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHH-HHHHEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHH-HHHhhh
Confidence            5899999999633 344556668899999999998 999999994 667776

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.03  E-value=0.0032  Score=55.72  Aligned_cols=85  Identities=22%  Similarity=0.225  Sum_probs=56.5

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh--hc
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK  300 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~--~~  300 (405)
                      |+|+=|..-+..++   ...|++.|++++++..                   .+++  .++|.||+||+.......  ..
T Consensus         2 i~vid~g~gn~~~~---~~~l~~~g~~v~~~~~-------------------~~~l--~~~d~lilpG~g~~~~~~~~l~   57 (199)
T PRK13181          2 IAIIDYGAGNLRSV---ANALKRLGVEAVVSSD-------------------PEEI--AGADKVILPGVGAFGQAMRSLR   57 (199)
T ss_pred             EEEEeCCCChHHHH---HHHHHHCCCcEEEEcC-------------------hHHh--ccCCEEEECCCCCHHHHHHHHH
Confidence            44554444344444   4477788888777611                   1233  568999999964211211  12


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ...+.++|+++.+.+++|.+||.|..+|+.+
T Consensus        58 ~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~   88 (199)
T PRK13181         58 ESGLDEALKEHVEKKQPVLGICLGMQLLFES   88 (199)
T ss_pred             HCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence            2346788898889999999999999999996

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.01  E-value=0.0027  Score=57.82  Aligned_cols=95  Identities=14%  Similarity=0.007  Sum_probs=58.9

Q ss_pred             CcEEEEEecCCCch---hhHHHHHHHHHh----cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523           17 ALNVLVPVGFGTEE---MEAVIIVDVLRR----AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM   89 (405)
Q Consensus        17 ~~ki~ill~~g~~~---~e~~~~~~~l~~----~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~   89 (405)
                      |+||+||..+.-..   .......++|..    .+.+++++-+..+              ..+.+.  .+||.+||.||.
T Consensus         1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p~~--~~~dgvvi~Gg~   64 (237)
T PRK09065          1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAG--------------EPLPAP--DDFAGVIITGSW   64 (237)
T ss_pred             CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCC--------------CCCCCh--hhcCEEEEeCCC
Confidence            45799997664322   223334455543    5677776655443              111223  369999999994


Q ss_pred             hhhhc-cccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           90 PGSVR-LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        90 ~~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ..... ..-...+.+||+++.++++||.+||-|.. +|+.
T Consensus        65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~  103 (237)
T PRK09065         65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQ-LLAH  103 (237)
T ss_pred             cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHH-HHHH
Confidence            21111 11124568999999999999999999766 5665

>PRK07567 glutamine amidotransferase; Provisional

Probab=97.00  E-value=0.0035  Score=57.22  Aligned_cols=97  Identities=21%  Similarity=0.178  Sum_probs=57.2

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCe---EEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVD---VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~---v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      |+.|+|+-.............+.|.+.+..   ++++....+             +....+  +.+||++||.||..+..
T Consensus         1 m~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~dgvIi~Gg~~~~~   65 (242)
T PRK07567          1 MKPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-------------PLPDLD--LDDYSGVIVGGSPFNVS   65 (242)
T ss_pred             CCcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-------------CCCCCC--HhhccEEEEcCCCCcCC
Confidence            455666655433322125556677766644   555443332             001112  36799999999964332


Q ss_pred             hh--hcC-------hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          297 RL--QKS-------RILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       297 ~~--~~~-------~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..  ...       ..+.++++.....+++|.+||-|..+|+.+
T Consensus        66 d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a  109 (242)
T PRK07567         66 DPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH  109 (242)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence            21  001       123455555668999999999999999987

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=96.98  E-value=0.003  Score=56.60  Aligned_cols=79  Identities=18%  Similarity=0.253  Sum_probs=57.3

Q ss_pred             HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523          237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR  316 (405)
Q Consensus       237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k  316 (405)
                      ....+.|.+.|+++.++..+.. ..         ++  ..+. ..+||+||+.||.....   +....+++++++.++++
T Consensus        14 ~~~~~~l~~~G~~~~~~~~~~~-~~---------~~--~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~   77 (214)
T PRK07765         14 FNLVQYLGQLGVEAEVWRNDDP-RL---------AD--EAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGT   77 (214)
T ss_pred             HHHHHHHHHcCCcEEEEECCCc-CH---------HH--HHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCC
Confidence            3567888999999999866542 00         11  1111 24699999999964332   34556799999999999


Q ss_pred             EEEEEchHHHHHHHc
Q 015523          317 IYGAVCSSPIVLHKH  331 (405)
Q Consensus       317 ~i~aic~g~~~La~a  331 (405)
                      ||.+||-|..+|+.+
T Consensus        78 PiLGIC~G~Qlla~a   92 (214)
T PRK07765         78 PLLGVCLGHQAIGVA   92 (214)
T ss_pred             CEEEEccCHHHHHHH
Confidence            999999999999865

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.98  E-value=0.0033  Score=56.09  Aligned_cols=90  Identities=22%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCE--EEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh-
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQ--VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-   93 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~--v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~-   93 (405)
                      +|||+|+=|..-+..++   .+.|++.|++  +.++..                   .+++  .++|.|||||+..... 
T Consensus         1 ~~~~~iid~g~gn~~s~---~~al~~~g~~~~v~~~~~-------------------~~~l--~~~d~lIlpG~~~~~~~   56 (209)
T PRK13146          1 MMTVAIIDYGSGNLRSA---AKALERAGAGADVVVTAD-------------------PDAV--AAADRVVLPGVGAFADC   56 (209)
T ss_pred             CCeEEEEECCCChHHHH---HHHHHHcCCCccEEEECC-------------------HHHh--cCCCEEEECCCCcHHHH
Confidence            46899987776555554   6777777874  333221                   1233  3699999999732111 


Q ss_pred             --ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCC
Q 015523           94 --RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL  131 (405)
Q Consensus        94 --~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agl  131 (405)
                        .+........+++..++.++|+.++|.|.. +|++.+.
T Consensus        57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q-~l~~~~~   95 (209)
T PRK13146         57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQ-LLFERGL   95 (209)
T ss_pred             HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHH-HHhhccc
Confidence              121111223345545678999999999755 7888753

>PRK06490 glutamine amidotransferase; Provisional

Probab=96.98  E-value=0.0028  Score=57.77  Aligned_cols=96  Identities=11%  Similarity=0.018  Sum_probs=65.1

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      .++||.||.-.+++.  ...+.+.|+..+++++++.+..+++         .|    +++  .+||.+||.||..+..+.
T Consensus         6 ~~~~vlvi~h~~~~~--~g~l~~~l~~~g~~~~v~~~~~~~~---------~p----~~l--~~~dgvii~Ggp~~~~d~   68 (239)
T PRK06490          6 DKRPVLIVLHQERST--PGRVGQLLQERGYPLDIRRPRLGDP---------LP----DTL--EDHAGAVIFGGPMSANDP   68 (239)
T ss_pred             CCceEEEEecCCCCC--ChHHHHHHHHCCCceEEEeccCCCC---------CC----Ccc--cccCEEEEECCCCCCCCC
Confidence            467888887555444  4457889999999999887654310         11    122  369999999984222111


Q ss_pred             c-cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 R-DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 ~-~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      . -...+.+||+++++.++|+.+||-|.. +|+.+
T Consensus        69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a  102 (239)
T PRK06490         69 DDFIRREIDWISVPLKENKPFLGICLGAQ-MLARH  102 (239)
T ss_pred             chHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            1 123467899999999999999999866 67765

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.97  E-value=0.0036  Score=55.23  Aligned_cols=83  Identities=19%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC-CccchHhh-
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-GVAGAERL-  298 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg-G~~~~~~~-  298 (405)
                      |+|+|+=|-.-+...+   ...|++.+++++++...                   +++  .++|.||+|| |. ..... 
T Consensus         1 m~i~iid~g~gn~~s~---~~~l~~~g~~~~~v~~~-------------------~~~--~~~d~iIlPG~G~-~~~~~~   55 (196)
T PRK13170          1 MNVVIIDTGCANLSSV---KFAIERLGYEPVVSRDP-------------------DVI--LAADKLFLPGVGT-AQAAMD   55 (196)
T ss_pred             CeEEEEeCCCchHHHH---HHHHHHCCCeEEEECCH-------------------HHh--CCCCEEEECCCCc-hHHHHH
Confidence            4677776654455444   44777788888777321                   223  4579999999 43 22221 


Q ss_pred             -hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 -QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 -~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       .....+.+.++   +.++||.+||.|..+|+.+
T Consensus        56 ~l~~~~l~~~i~---~~~~PilGIClG~Qll~~~   86 (196)
T PRK13170         56 QLRERELIDLIK---ACTQPVLGICLGMQLLGER   86 (196)
T ss_pred             HHHHcChHHHHH---HcCCCEEEECHHHHHHhhh
Confidence             11123445554   3589999999999999987

>PRK00784 cobyric acid synthase; Provisional

Probab=96.95  E-value=0.0027  Score=64.21  Aligned_cols=89  Identities=19%  Similarity=0.077  Sum_probs=63.3

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHh-cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc-
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-   94 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~-   94 (405)
                      +.||+|+-+|...-.   .=++.|+. .|+++.++++..                   +++  ++|.|++|||.+.... 
T Consensus       251 ~~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~-------------------~l~--~~d~lilpGg~~~~~~~  306 (488)
T PRK00784        251 ALRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE-------------------PLP--DADLVILPGSKNTIADL  306 (488)
T ss_pred             ceEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc-------------------ccc--cCCEEEECCccchHHHH
Confidence            368999997742222   33567776 788888887632                   233  5899999999643322 


Q ss_pred             -cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523           95 -LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  130 (405)
Q Consensus        95 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag  130 (405)
                       +..+..+.+.|+++.++++||.++|.| ..+|++.-
T Consensus       307 ~~~~~~~l~~~i~~~~~~g~pilg~C~G-~~~L~~~~  342 (488)
T PRK00784        307 AWLRESGWDEAIRAHARRGGPVLGICGG-YQMLGRRI  342 (488)
T ss_pred             HHHHHcCHHHHHHHHHHcCCeEEEECHH-HHHHhhhc
Confidence             334556889999999999999999996 54677643

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=96.93  E-value=0.003  Score=55.47  Aligned_cols=87  Identities=17%  Similarity=0.304  Sum_probs=58.5

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD   97 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~   97 (405)
                      |||+|+  |+.+... ..+.+.|++.|++++++..+..               ..+++.  .||.|||.||. +..  ..
T Consensus         2 ~~ilii--d~~dsf~-~~i~~~l~~~g~~~~v~~~~~~---------------~~~~l~--~~d~iIi~gGp-~~~--~~   58 (190)
T PRK06895          2 TKLLII--NNHDSFT-FNLVDLIRKLGVPMQVVNVEDL---------------DLDEVE--NFSHILISPGP-DVP--RA   58 (190)
T ss_pred             cEEEEE--eCCCchH-HHHHHHHHHcCCcEEEEECCcc---------------ChhHhc--cCCEEEECCCC-CCh--HH
Confidence            455544  4444444 3489999999999999876432               011222  58999988883 322  12


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .+.+.++|++ ++.++|+.+||-|.. +|+.+
T Consensus        59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~   88 (190)
T PRK06895         59 YPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF   88 (190)
T ss_pred             hhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            3567788876 788999999999766 67765

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=96.92  E-value=0.003  Score=55.40  Aligned_cols=76  Identities=17%  Similarity=0.122  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcC
Q 015523          236 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAG  315 (405)
Q Consensus       236 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~  315 (405)
                      +..+.+.|++.|++++++..+..                .++++..++|.|++|||....    .+....+++++..+.+
T Consensus        11 ~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~~~~----~~~~~~~~i~~~~~~~   70 (188)
T TIGR00888        11 TQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGPSSV----YAENAPRADEKIFELG   70 (188)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCCCCc----CcCCchHHHHHHHhCC
Confidence            34567788888988887755431                222211246799999996432    2223567888888999


Q ss_pred             CEEEEEchHHHHHHHc
Q 015523          316 RIYGAVCSSPIVLHKH  331 (405)
Q Consensus       316 k~i~aic~g~~~La~a  331 (405)
                      +||.+||-|..+|+.+
T Consensus        71 ~PilGIC~G~Qll~~~   86 (188)
T TIGR00888        71 VPVLGICYGMQLMAKQ   86 (188)
T ss_pred             CCEEEECHHHHHHHHh
Confidence            9999999999999876

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=96.89  E-value=0.0086  Score=60.79  Aligned_cols=89  Identities=16%  Similarity=0.145  Sum_probs=62.8

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-  297 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-  297 (405)
                      .+++|+|+=|-.-+..++   ...|++.++++.++..                   .+++  .++|.||+||+...... 
T Consensus         5 ~~~~i~iiDyG~GN~~sl---~~al~~~G~~v~~v~~-------------------~~~l--~~~D~lIlpG~gs~~~~m   60 (538)
T PLN02617          5 ADSEVTLLDYGAGNVRSV---RNAIRHLGFTIKDVQT-------------------PEDI--LNADRLIFPGVGAFGSAM   60 (538)
T ss_pred             CCCeEEEEECCCCCHHHH---HHHHHHCCCeEEEECC-------------------hhhh--ccCCEEEECCCCCHHHHH
Confidence            468899887776566654   5666678888866531                   1233  57899999996422121 


Q ss_pred             -hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 -LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 -~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       ......+.+.|+++...++|+.+||.|..+|+.+
T Consensus        61 ~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~   95 (538)
T PLN02617         61 DVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES   95 (538)
T ss_pred             HHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence             1223347788898889999999999999999974

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=96.88  E-value=0.0041  Score=53.94  Aligned_cols=88  Identities=24%  Similarity=0.284  Sum_probs=62.9

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC-Ccc--chH
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-GVA--GAE  296 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg-G~~--~~~  296 (405)
                      |++|+|+=|.--+...+   ...|++.|+++.+.+.                   .+++  ...|.||+|| |.-  .+.
T Consensus         1 m~~i~IIDyg~GNL~Sv---~~Aler~G~~~~vs~d-------------------~~~i--~~AD~liLPGVGaf~~am~   56 (204)
T COG0118           1 MMMVAIIDYGSGNLRSV---KKALERLGAEVVVSRD-------------------PEEI--LKADKLILPGVGAFGAAMA   56 (204)
T ss_pred             CCEEEEEEcCcchHHHH---HHHHHHcCCeeEEecC-------------------HHHH--hhCCEEEecCCCCHHHHHH
Confidence            57899998876676664   4556667766654422                   2334  5789999999 431  123


Q ss_pred             hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523          297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  332 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG  332 (405)
                      .+.+. .+.+.|++....++|+.+||-|..+|.+.+
T Consensus        57 ~L~~~-gl~~~i~~~~~~~kP~LGIClGMQlLfe~S   91 (204)
T COG0118          57 NLRER-GLIEAIKEAVESGKPFLGICLGMQLLFERS   91 (204)
T ss_pred             HHHhc-chHHHHHHHHhcCCCEEEEeHhHHhhhhcc
Confidence            34333 889999999999999999999999997543

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=96.87  E-value=0.0061  Score=67.68  Aligned_cols=99  Identities=12%  Similarity=0.011  Sum_probs=73.0

Q ss_pred             CCcEEEEEecCCCch-hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           16 FALNVLVPVGFGTEE-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~~-~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      ...||+|+.++|.+- .|.   ...|..+||++..+..+.-  ..   |      ..   .  .+|++|++|||....+.
T Consensus       928 ~~p~VaIl~~pG~N~~~e~---~~Af~~aGf~~~~v~~~dl--~~---~------~~---l--~~f~glv~~Ggfsy~D~  988 (1202)
T TIGR01739       928 PRHQVAVLLLPGQSVPHGL---LAALTNAGFDPRIVSITEL--KK---T------DF---L--DTFSGLIIGGASGTLDS  988 (1202)
T ss_pred             CCCeEEEEeCCCCCCHHHH---HHHHHHcCCceEEEEeccC--CC---C------Cc---h--hheEEEEEcCcCCCCcc
Confidence            356999999999884 444   5667779999988876652  00   0      01   1  26999999998632222


Q ss_pred             ----------cccChHHHHHHHHHH-HcCCEEEEEcc-chHHhhhhcCCCCC
Q 015523           95 ----------LRDCEILKKITSKQA-EEKRLYGAICA-APAVTLLPWGLLRR  134 (405)
Q Consensus        95 ----------~~~~~~~~~~l~~~~-~~~~~i~aic~-g~~~~La~agll~g  134 (405)
                                +..++.+++.+++|+ +.++++.+||+ |-. +|.+.|++..
T Consensus       989 lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l~~ 1039 (1202)
T TIGR01739       989 EVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIVGY 1039 (1202)
T ss_pred             chHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCCcC
Confidence                      334788999999999 55999999999 988 7999999853

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=96.85  E-value=0.0032  Score=62.16  Aligned_cols=89  Identities=22%  Similarity=0.231  Sum_probs=63.8

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch--Hhh
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--ERL  298 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~--~~~  298 (405)
                      .||+|.-=.-|+..= ---++.|+++ .++..+||-..                 +++  +++|+|++|||+...  ..+
T Consensus       234 ~~iavA~D~AF~FyY-~enl~~L~~~-aelv~fSPl~~-----------------~~l--p~~D~l~lpGG~~e~~~~~L  292 (433)
T PRK13896        234 PTVAVARDAAFCFRY-PATIERLRER-ADVVTFSPVAG-----------------DPL--PDCDGVYLPGGYPELHADAL  292 (433)
T ss_pred             CeEEEEEcCccceeC-HHHHHHHHhc-CcEEEEcCCCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence            589988755443321 2245677777 88999988543                 223  368999999998432  224


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..+... +.|+++.++|++|.++|.|-.+|++.
T Consensus       293 ~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~  324 (433)
T PRK13896        293 ADSPAL-DELADRAADGLPVLGECGGLMALAES  324 (433)
T ss_pred             HhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence            445455 88999999999999999999999874

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=96.84  E-value=0.0049  Score=51.20  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=63.6

Q ss_pred             CCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-H
Q 015523          218 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-E  296 (405)
Q Consensus       218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-~  296 (405)
                      ..+.-|+++...|.-...+-.+-..+....|.+.+-               +.+-.+-.|+  .+.|++|||||..-. .
T Consensus         9 Ktn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~---------------~~tVKT~~D~--aq~DaLIIPGGEST~ms   71 (226)
T KOG3210|consen    9 KTNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKLS---------------VMTVKTKNDL--AQCDALIIPGGESTAMS   71 (226)
T ss_pred             CcceEEeeeehhhHHHHHHHHHHHhhccCcceEEEE---------------EEeecCHHHH--hhCCEEEecCCchhHHH
Confidence            345678999999876666554444444443433321               1122233555  788999999996322 2


Q ss_pred             hhhcChHHHHHHHHHhhcC-CEEEEEchHHHHHHH
Q 015523          297 RLQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHK  330 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~-k~i~aic~g~~~La~  330 (405)
                      .+.+-..+.+-|.++..++ +++-+.|+|..+|.+
T Consensus        72 lia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~  106 (226)
T KOG3210|consen   72 LIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQ  106 (226)
T ss_pred             HHHhhhhhHHHHHHHhcCCCccceeechhhhhhhh
Confidence            3444455888888888777 999999999999975

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=96.83  E-value=0.0025  Score=56.41  Aligned_cols=77  Identities=18%  Similarity=0.113  Sum_probs=55.2

Q ss_pred             hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc---cccChHHHHHHH
Q 015523           30 EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR---LRDCEILKKITS  106 (405)
Q Consensus        30 ~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~---~~~~~~~~~~l~  106 (405)
                      ...+..+.+.|++.|++++++....                   +++  +||+||+||+. ....   ......+.++++
T Consensus         8 ~~~~~~~~~~l~~~g~~v~v~~~~~-------------------~l~--~~d~iiipG~~-~~~~~~~~~~~~~~~~~i~   65 (198)
T cd01748           8 MGNLRSVANALERLGAEVIITSDPE-------------------EIL--SADKLILPGVG-AFGDAMANLRERGLIEALK   65 (198)
T ss_pred             CChHHHHHHHHHHCCCeEEEEcChH-------------------Hhc--cCCEEEECCCC-cHHHHHHHHHHcChHHHHH
Confidence            3445666889999999988876211                   122  59999999962 2211   112345789999


Q ss_pred             HHHHcCCEEEEEccchHHhhhhc
Q 015523          107 KQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       107 ~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ++.++++||.++|.|-. +|+.+
T Consensus        66 ~~~~~~~pilGiC~G~q-~l~~~   87 (198)
T cd01748          66 EAIASGKPFLGICLGMQ-LLFES   87 (198)
T ss_pred             HHHHCCCcEEEECHHHH-Hhccc
Confidence            99999999999999655 78886

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=96.81  E-value=0.0037  Score=54.27  Aligned_cols=74  Identities=20%  Similarity=0.101  Sum_probs=53.0

Q ss_pred             HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCE
Q 015523           35 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL  114 (405)
Q Consensus        35 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~  114 (405)
                      .+.+.+++.|+++.++..+..                .++....+||+|+++||...+.   +.....++++++.++++|
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P   71 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP   71 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence            457888888999888865532                0111223699999999932222   346788899999999999


Q ss_pred             EEEEccchHHhhhh
Q 015523          115 YGAICAAPAVTLLP  128 (405)
Q Consensus       115 i~aic~g~~~~La~  128 (405)
                      +.+||.|.. +|+.
T Consensus        72 vlGIC~G~Q-~l~~   84 (178)
T cd01744          72 IFGICLGHQ-LLAL   84 (178)
T ss_pred             EEEECHHHH-HHHH
Confidence            999999866 4554

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=96.80  E-value=0.009  Score=57.61  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=63.8

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      .+||+++=+ |+-    ...++.|.+.|+.+.++..+.                .++++...++|.|+++||..++..  
T Consensus       177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIvLSgGPgdp~~--  233 (360)
T PRK12564        177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATT----------------TAEEILALNPDGVFLSNGPGDPAA--  233 (360)
T ss_pred             CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCChHH--
Confidence            357777744 432    347888888999998885443                123322236999999999654433  


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       .+..+++++++.++++||.+||-|..+|+.+
T Consensus       234 -~~~~~~~i~~~~~~~~PilGIClG~QlLa~a  264 (360)
T PRK12564        234 -LDYAIEMIRELLEKKIPIFGICLGHQLLALA  264 (360)
T ss_pred             -HHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence             3678899999988899999999999999765

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=96.78  E-value=0.0037  Score=55.17  Aligned_cols=74  Identities=22%  Similarity=0.284  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hhcChHHHHHHHHHh
Q 015523          236 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQK  312 (405)
Q Consensus       236 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~~~~~l~~~l~~~~  312 (405)
                      +..+.+.|+..|.+++++..+                   +++  +++|.|++||+......   +.... ...+++++.
T Consensus        11 ~~~l~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~~   68 (196)
T TIGR01855        11 LGSVKRALKRVGAEPVVVKDS-------------------KEA--ELADKLILPGVGAFGAAMARLRENG-LDLFVELVV   68 (196)
T ss_pred             HHHHHHHHHHCCCcEEEEcCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHHH
Confidence            456777788888888877521                   122  46899999995321111   22222 334447788


Q ss_pred             hcCCEEEEEchHHHHHHHc
Q 015523          313 VAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       313 ~~~k~i~aic~g~~~La~a  331 (405)
                      ..+++|.+||.|..+|+.+
T Consensus        69 ~~~~pvlGiC~G~Qll~~~   87 (196)
T TIGR01855        69 RLGKPVLGICLGMQLLFER   87 (196)
T ss_pred             hCCCCEEEECHHHHHhhhc
Confidence            8999999999999999998

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=96.77  E-value=0.0063  Score=54.43  Aligned_cols=96  Identities=17%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             CcCEEEEEeCCCCcHHH-HHHHHHHHHhC-CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          219 RMPRVLIPIANGSEEIE-IVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e-~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      ...||+++-.......| +......|.+. |+++..+....            . +...+.+  ..+|+|++|||.  ..
T Consensus        30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~------------~-~~~~~~l--~~ad~I~l~GG~--~~   92 (212)
T cd03146          30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD------------T-EDPLDAL--LEADVIYVGGGN--TF   92 (212)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC------------c-ccHHHHH--hcCCEEEECCch--HH
Confidence            45788888776554333 56678888999 88877664321            1 1113334  678999999984  33


Q ss_pred             hh---hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          297 RL---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       297 ~~---~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+   .+...+.+.|++..++|++++++|.|+.++...
T Consensus        93 ~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146          93 NLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             HHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            32   233367888888889999999999999999884

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=96.74  E-value=0.016  Score=51.01  Aligned_cols=55  Identities=24%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             cCcCCCCccEEEEcCCccchHhhhc--ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          276 SDAAESVYDLIILPGGVAGAERLQK--SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       276 ~~~~~~~~D~livpgG~~~~~~~~~--~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ++++...+|++|+.||..+.. ...  .+...++|++....+++|.+||-|..+||.+
T Consensus        39 ~~~~~~~~~giIlsGgp~sv~-~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~   95 (198)
T COG0518          39 EELPLDSPDGIIISGGPMSVY-DEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA   95 (198)
T ss_pred             ccccccCCCEEEEcCCCCCCc-cccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence            334334569999999974322 233  6789999999999999999999999999874

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=96.72  E-value=0.0053  Score=53.79  Aligned_cols=87  Identities=11%  Similarity=0.166  Sum_probs=59.9

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHH
Q 015523          225 IPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL  304 (405)
Q Consensus       225 il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l  304 (405)
                      |++.|+++... ..+.+.|.+.|+++.++..+..               .++++...++|.||+-||.+.+..   ....
T Consensus         2 il~idn~Dsft-~nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iils~GPg~p~~---~~~~   62 (187)
T PRK08007          2 ILLIDNYDSFT-WNLYQYFCELGADVLVKRNDAL---------------TLADIDALKPQKIVISPGPCTPDE---AGIS   62 (187)
T ss_pred             EEEEECCCccH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCEEEEcCCCCChHH---CCcc
Confidence            44555554444 3477888888999888765431               223332246899999998755543   3445


Q ss_pred             HHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          305 KKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       305 ~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +++++. +..++||.+||-|..+|+.+
T Consensus        63 ~~~~~~-~~~~~PiLGIClG~Q~la~a   88 (187)
T PRK08007         63 LDVIRH-YAGRLPILGVCLGHQAMAQA   88 (187)
T ss_pred             HHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            666665 56789999999999999876

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=96.71  E-value=0.0053  Score=48.74  Aligned_cols=88  Identities=18%  Similarity=0.288  Sum_probs=58.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc--hHhhh
Q 015523          222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERLQ  299 (405)
Q Consensus       222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~--~~~~~  299 (405)
                      +|+|..-+|....-+-.....|+... .+..++.+.   +         .+..++    .++|.|++|||...  +..+.
T Consensus         1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I---------~~~~~~----~~ad~lVlPGGa~~~~~~~L~   63 (114)
T cd03144           1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---L---------AVGPWE----SKTALLVVPGGADLPYCRALN   63 (114)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---H---------hcCchh----hCCCEEEECCCChHHHHHHHH
Confidence            36666677888888888888887644 344333321   0         011122    46899999998532  22333


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVL  328 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~L  328 (405)
                      .. . .+.|+++.++|+++.+||.|+.+.
T Consensus        64 ~~-g-~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          64 GK-G-NRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             hh-C-cHHHHHHHHCCCcEEEEecCccce
Confidence            33 3 888888889999999999999876

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.71  E-value=0.0086  Score=52.38  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=56.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh--hc
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK  300 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~--~~  300 (405)
                      |+|+=|..-+..++.   ..|++.++++.++...                   +++  .++|.||+||+-.-...+  .+
T Consensus         2 i~iidyg~gN~~s~~---~al~~~g~~~~~v~~~-------------------~~l--~~~D~lIlPG~g~~~~~~~~L~   57 (192)
T PRK13142          2 IVIVDYGLGNISNVK---RAIEHLGYEVVVSNTS-------------------KII--DQAETIILPGVGHFKDAMSEIK   57 (192)
T ss_pred             EEEEEcCCccHHHHH---HHHHHcCCCEEEEeCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHH
Confidence            788888877776654   5555677777765322                   233  468999999984211111  12


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  332 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG  332 (405)
                      ...+.+.|++  ..++++.+||.|..+|++..
T Consensus        58 ~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~   87 (192)
T PRK13142         58 RLNLNAILAK--NTDKKMIGICLGMQLMYEHS   87 (192)
T ss_pred             HCCcHHHHHH--hCCCeEEEECHHHHHHhhhc
Confidence            2236777776  57999999999999998653

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=96.70  E-value=0.007  Score=53.19  Aligned_cols=87  Identities=9%  Similarity=0.152  Sum_probs=59.0

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHH
Q 015523          225 IPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL  304 (405)
Q Consensus       225 il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l  304 (405)
                      |++.|..+... ..+.+.|++.|++++++..+..               .++++...++|.||+-||...+.+   ....
T Consensus         2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~~---~~~~   62 (191)
T PRK06774          2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPNE---AGIS   62 (191)
T ss_pred             EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChHh---CCCc
Confidence            34445444333 4477888889999988875532               233332246899999998755443   3334


Q ss_pred             HHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          305 KKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       305 ~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..+++. ++.++||.+||-|..+|+.+
T Consensus        63 ~~~i~~-~~~~~PiLGIC~G~Qlla~~   88 (191)
T PRK06774         63 LAVIRH-FADKLPILGVCLGHQALGQA   88 (191)
T ss_pred             hHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            566654 56789999999999999986

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=96.69  E-value=0.0067  Score=53.19  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=53.0

Q ss_pred             HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523          237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR  316 (405)
Q Consensus       237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k  316 (405)
                      ....+.|.+.|+.+.++..+..               .++++...++|.||+.||.+....   .....++++++ .+++
T Consensus        13 ~~~~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iilsgGpg~p~~---~~~~~~~i~~~-~~~~   73 (188)
T TIGR00566        13 YNLVQYFCELGAEVVVKRNDSL---------------TLQEIEALLPLLIVISPGPCTPNE---AGISLEAIRHF-AGKL   73 (188)
T ss_pred             HHHHHHHHHcCCceEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh---cchhHHHHHHh-ccCC
Confidence            3467777778888887765532               122332246899999888754432   23347788877 6789


Q ss_pred             EEEEEchHHHHHHHc
Q 015523          317 IYGAVCSSPIVLHKH  331 (405)
Q Consensus       317 ~i~aic~g~~~La~a  331 (405)
                      ||.+||-|..+|+.+
T Consensus        74 PvLGIC~G~Qll~~~   88 (188)
T TIGR00566        74 PILGVCLGHQAMGQA   88 (188)
T ss_pred             CEEEECHHHHHHHHH
Confidence            999999999999876

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK05380 pyrG CTP synthetase; Validated

Probab=96.67  E-value=0.01  Score=59.45  Aligned_cols=227  Identities=14%  Similarity=0.063  Sum_probs=124.5

Q ss_pred             CcccEEEEc-CCchhhhccccChHHHHHHHHHHHc-C-CEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-----
Q 015523           78 QVFDLIALP-GGMPGSVRLRDCEILKKITSKQAEE-K-RLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-----  149 (405)
Q Consensus        78 ~~~d~liip-gg~~~~~~~~~~~~~~~~l~~~~~~-~-~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-----  149 (405)
                      .++|++|+= ||.  ..+ .++.++++.+|++..+ | .-++.+-..-.-+|..+|=++-|. |=|-  ...|++     
T Consensus       131 ~~~dv~i~EiGGT--vGD-iEs~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKP-tQhs--v~~lr~~Gi~p  204 (533)
T PRK05380        131 TDADVVIVEIGGT--VGD-IESLPFLEAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKP-TQHS--VKELRSIGIQP  204 (533)
T ss_pred             CCCCEEEEEeCCc--ccc-ccccHHHHHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCc-hHHH--HHHHHhCCCCC
Confidence            368999984 663  222 2456777778876644 2 222222221233455666554433 1121  111221     


Q ss_pred             --------Ccccc----C----cEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhccccc-ccCccccccccc
Q 015523          150 --------FWAVK----S----NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNSLKKEEFNE  212 (405)
Q Consensus       150 --------~~~~~----~----~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~-~~~~~~~~~~~~  212 (405)
                              .+..+    +    --|...++|.+-...+.++.=+.+-++    .+.+.+.+.|.++. .++...|..+-.
T Consensus       205 d~i~~R~~~~l~~~~~~Kia~fc~v~~~~vi~~~d~~~iy~vPl~l~~q----~~~~~i~~~l~l~~~~~~~~~w~~~~~  280 (533)
T PRK05380        205 DILVCRSERPLPEEEKRKIALFCNVPEEAVISAPDVDSIYEVPLLLHEQ----GLDDIVLERLGLEAPEPDLSEWEELVE  280 (533)
T ss_pred             CEEEEecCCCCCHHHHHHHHhccCCCHHHEEEcCCCccHHhhhHHHHHC----CCHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence                    00000    0    023345788888887777766665554    44556777777764 222223333322


Q ss_pred             cccccCCcCEEEEEe-CCCCcHHHHHHHHHHHHhCC----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEE
Q 015523          213 VEWFFDRMPRVLIPI-ANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLII  287 (405)
Q Consensus       213 ~~~~~~~~~~V~il~-~~g~~~~e~~~~~~~l~~~~----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~li  287 (405)
                      .........+|+++- |-...+. ...+.+.|..++    .++++...+.. .+..        +...+.+  ..+|.|+
T Consensus       281 ~~~~~~~~v~IalVGKY~~l~Da-Y~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~--------~~~~~~L--~~~DGII  348 (533)
T PRK05380        281 RLKNPKGEVTIALVGKYVELPDA-YKSVIEALKHAGIANDVKVNIKWIDSE-DLEE--------ENVAELL--KGVDGIL  348 (533)
T ss_pred             HHhCCCCceEEEEEeCccCCcHH-HHHHHHHHHHHHHHcCCeeEEEEEChh-hccC--------cchhhHh--hcCCEEE
Confidence            111123346777764 3333333 566777887775    45666655543 2211        1112223  6789999


Q ss_pred             EcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          288 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       288 vpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      +|||++. .   ..+..+++++.+..+++|+.+||-|..+++-
T Consensus       349 lpGGfG~-~---~~~g~i~~i~~a~e~~iPiLGIClGmQll~v  387 (533)
T PRK05380        349 VPGGFGE-R---GIEGKILAIRYARENNIPFLGICLGMQLAVI  387 (533)
T ss_pred             ecCCCCc-c---ccccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence            9999743 2   2335678888888999999999999987753

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=96.66  E-value=0.0064  Score=48.28  Aligned_cols=88  Identities=23%  Similarity=0.220  Sum_probs=57.8

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch--hhhccc
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP--GSVRLR   96 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~--~~~~~~   96 (405)
                      +|+|+--+|.....+....+.|+... .+..++.+.   +.         +..++    .++|.||+|||..  .+..+.
T Consensus         1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I~---------~~~~~----~~ad~lVlPGGa~~~~~~~L~   63 (114)
T cd03144           1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---LA---------VGPWE----SKTALLVVPGGADLPYCRALN   63 (114)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---Hh---------cCchh----hCCCEEEECCCChHHHHHHHH
Confidence            46777777888888888888887744 444443322   11         11111    3689999999842  123333


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhh
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLL  127 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La  127 (405)
                      .. . .+.|+++.++++++.+||.| + .++
T Consensus        64 ~~-g-~~~i~~~v~~g~p~LGIClG-A-y~a   90 (114)
T cd03144          64 GK-G-NRRIRNFVRNGGNYLGICAG-A-YLA   90 (114)
T ss_pred             hh-C-cHHHHHHHHCCCcEEEEecC-c-cce
Confidence            32 3 77888888999999999995 6 355

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PRK05670 anthranilate synthase component II; Provisional

Probab=96.62  E-value=0.0077  Score=52.83  Aligned_cols=80  Identities=19%  Similarity=0.165  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHh
Q 015523          233 EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQK  312 (405)
Q Consensus       233 ~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~  312 (405)
                      ++=.....+.|++.|+.++++..+.. .           ...++.   .++|.||+.||.++...   .....++++++ 
T Consensus         9 d~f~~~i~~~l~~~g~~~~v~~~~~~-~-----------~~~~~~---~~~dglIlsgGpg~~~d---~~~~~~~l~~~-   69 (189)
T PRK05670          9 DSFTYNLVQYLGELGAEVVVYRNDEI-T-----------LEEIEA---LNPDAIVLSPGPGTPAE---AGISLELIREF-   69 (189)
T ss_pred             CchHHHHHHHHHHCCCcEEEEECCCC-C-----------HHHHHh---CCCCEEEEcCCCCChHH---cchHHHHHHHh-
Confidence            33445678889999999998877642 0           011222   34899999888644433   23456677764 


Q ss_pred             hcCCEEEEEchHHHHHHHc
Q 015523          313 VAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       313 ~~~k~i~aic~g~~~La~a  331 (405)
                      ..++||.+||-|..+|+.+
T Consensus        70 ~~~~PvLGIClG~Qlla~a   88 (189)
T PRK05670         70 AGKVPILGVCLGHQAIGEA   88 (189)
T ss_pred             cCCCCEEEECHHHHHHHHH
Confidence            5679999999999999876

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=96.60  E-value=0.0093  Score=51.74  Aligned_cols=88  Identities=20%  Similarity=0.220  Sum_probs=60.5

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC-Cc--hhhh
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG-GM--PGSV   93 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg-g~--~~~~   93 (405)
                      +++|+|+=|.--+   +......|++.|+++.+.....                   .+.  ..|.||+|| |.  ..+.
T Consensus         1 m~~i~IIDyg~GN---L~Sv~~Aler~G~~~~vs~d~~-------------------~i~--~AD~liLPGVGaf~~am~   56 (204)
T COG0118           1 MMMVAIIDYGSGN---LRSVKKALERLGAEVVVSRDPE-------------------EIL--KADKLILPGVGAFGAAMA   56 (204)
T ss_pred             CCEEEEEEcCcch---HHHHHHHHHHcCCeeEEecCHH-------------------HHh--hCCEEEecCCCCHHHHHH
Confidence            4678888766444   4555777778887776654322                   232  589999998 42  2233


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  130 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag  130 (405)
                      .+.+. .+.+.|++....++|+.+||-|-. +|.+.+
T Consensus        57 ~L~~~-gl~~~i~~~~~~~kP~LGIClGMQ-lLfe~S   91 (204)
T COG0118          57 NLRER-GLIEAIKEAVESGKPFLGICLGMQ-LLFERS   91 (204)
T ss_pred             HHHhc-chHHHHHHHHhcCCCEEEEeHhHH-hhhhcc
Confidence            34333 789999999999999999999755 566543

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=96.49  E-value=0.011  Score=51.72  Aligned_cols=75  Identities=16%  Similarity=0.135  Sum_probs=51.0

Q ss_pred             HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523          238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  317 (405)
Q Consensus       238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~  317 (405)
                      .....|++.|++++++..+..             +..+.+.  .++|++|+.||.....   ++ .....+++...+++|
T Consensus        13 ~~~~~l~~~G~~~~~~~~~~~-------------~~~~~~~--~~~dgvil~gG~~~~~---~~-~~~~~i~~~~~~~~P   73 (184)
T cd01743          13 NLVQYLRELGAEVVVVRNDEI-------------TLEELEL--LNPDAIVISPGPGHPE---DA-GISLEIIRALAGKVP   73 (184)
T ss_pred             HHHHHHHHcCCceEEEeCCCC-------------CHHHHhh--cCCCEEEECCCCCCcc---cc-hhHHHHHHHHhcCCC
Confidence            366788888999998877653             1111122  5799999977753321   12 244455555677899


Q ss_pred             EEEEchHHHHHHHc
Q 015523          318 YGAVCSSPIVLHKH  331 (405)
Q Consensus       318 i~aic~g~~~La~a  331 (405)
                      |.+||-|..+|+.+
T Consensus        74 vlGIC~G~Qlla~~   87 (184)
T cd01743          74 ILGVCLGHQAIAEA   87 (184)
T ss_pred             EEEECHhHHHHHHH
Confidence            99999999999886

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=96.48  E-value=0.017  Score=55.62  Aligned_cols=94  Identities=16%  Similarity=0.253  Sum_probs=67.9

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhC---CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRA---KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~---~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      |+|+|.--+|.....+...++.|++.   .|.|..++.+.           +..+ .+.    .+++++++|||......
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~-----------l~~~-pw~----~~~~LlV~PGG~d~~y~   64 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE-----------LLNE-PWQ----SKCALLVMPGGADLPYC   64 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH-----------hhcC-ccc----cCCcEEEECCCcchHHH
Confidence            57888888899999999999998763   47777664432           1111 111    45899999999632222


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      -.-++.-.+.||+|.++|+--.+||+|+.+-.+
T Consensus        65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   65 RSLNGEGNRRIRQFVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             HhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence            223566788999999999999999999998764

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=96.44  E-value=0.019  Score=51.96  Aligned_cols=94  Identities=13%  Similarity=0.058  Sum_probs=64.6

Q ss_pred             cCEEEEEeCCCC--cHHH-HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          220 MPRVLIPIANGS--EEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       220 ~~~V~il~~~g~--~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      .+||+++-+-..  +..+ +....+.|.+.|+++..+-...               ...+.+  .+.|+|+++||.  ..
T Consensus        31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------------d~~~~l--~~ad~I~v~GGn--t~   91 (233)
T PRK05282         31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------------DPVAAI--ENAEAIFVGGGN--TF   91 (233)
T ss_pred             CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------------hhHHHH--hcCCEEEECCcc--HH
Confidence            467777765442  2222 4457888889999877552211               112223  568999999994  44


Q ss_pred             h---hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523          297 R---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  332 (405)
Q Consensus       297 ~---~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG  332 (405)
                      .   ......+.+.|++..++|+++++.|+|+.+++...
T Consensus        92 ~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i  130 (233)
T PRK05282         92 QLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI  130 (233)
T ss_pred             HHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence            3   23455688889999999999999999999987643

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=96.43  E-value=0.012  Score=51.84  Aligned_cols=87  Identities=8%  Similarity=0.088  Sum_probs=58.4

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHH
Q 015523          225 IPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL  304 (405)
Q Consensus       225 il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l  304 (405)
                      |++.|..+... ....+.|++.|+.++++..+..               .+++....++|.+++-||..+...   +...
T Consensus         2 il~id~~dsft-~~~~~~l~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~iilsgGp~~~~~---~~~~   62 (193)
T PRK08857          2 LLMIDNYDSFT-YNLYQYFCELGAQVKVVRNDEI---------------DIDGIEALNPTHLVISPGPCTPNE---AGIS   62 (193)
T ss_pred             EEEEECCCCcH-HHHHHHHHHCCCcEEEEECCCC---------------CHHHHhhCCCCEEEEeCCCCChHH---Ccch
Confidence            44445444443 3378888999999999876633               111111135789999888654432   3345


Q ss_pred             HHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          305 KKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       305 ~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .++++. .+.+.||.+||-|..+|+.+
T Consensus        63 ~~~i~~-~~~~~PiLGIClG~Qlia~a   88 (193)
T PRK08857         63 LQAIEH-FAGKLPILGVCLGHQAIAQV   88 (193)
T ss_pred             HHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            677765 57899999999999999876

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=96.41  E-value=0.0082  Score=60.00  Aligned_cols=46  Identities=26%  Similarity=0.330  Sum_probs=33.3

Q ss_pred             CCccEEEEcCCccchH-hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          281 SVYDLIILPGGVAGAE-RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       281 ~~~D~livpgG~~~~~-~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .++|+||+|||.-... .+  ...+.+.|+++   |++|.+||.|..+|++.
T Consensus        35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~   81 (476)
T PRK06278         35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK   81 (476)
T ss_pred             ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence            6789999999841101 11  23455666555   99999999999999887

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=96.40  E-value=0.012  Score=51.18  Aligned_cols=75  Identities=16%  Similarity=0.095  Sum_probs=49.9

Q ss_pred             HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523          237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR  316 (405)
Q Consensus       237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k  316 (405)
                      ..+.+.|++.|+.+.++..+..                .++.+..++|.||+|||...... .....   +.++..+.++
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~~~~~~-~~~~~---~~~~~~~~~~   71 (181)
T cd01742          12 HLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGPSSVYE-EDAPR---VDPEIFELGV   71 (181)
T ss_pred             HHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCcccccc-cccch---hhHHHHhcCC
Confidence            3467888888988887765431                11112367999999999643221 11122   3344456799


Q ss_pred             EEEEEchHHHHHHHc
Q 015523          317 IYGAVCSSPIVLHKH  331 (405)
Q Consensus       317 ~i~aic~g~~~La~a  331 (405)
                      ++.+||.|..+|+.+
T Consensus        72 PilGIC~G~Qll~~~   86 (181)
T cd01742          72 PVLGICYGMQLIAKA   86 (181)
T ss_pred             CEEEEcHHHHHHHHh
Confidence            999999999999985

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.37  E-value=0.0069  Score=54.00  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=56.1

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCcc---chHhhh
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA---GAERLQ  299 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~---~~~~~~  299 (405)
                      |+|+=|-.-+.   ......|+..++++.+++.                   .+++  .++|.||+||+-.   .+..+.
T Consensus         2 i~iidyg~gNl---~s~~~al~~~~~~~~~~~~-------------------~~~l--~~~d~iIlPG~g~~~~~~~~l~   57 (210)
T PRK14004          2 IAILDYGMGNI---HSCLKAVSLYTKDFVFTSD-------------------PETI--ENSKALILPGDGHFDKAMENLN   57 (210)
T ss_pred             EEEEECCCchH---HHHHHHHHHcCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence            56665554444   4445555556666655422                   2233  4689999999752   122333


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      . ..+.+.|+++..++++|.+||.|..+|+++
T Consensus        58 ~-~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~   88 (210)
T PRK14004         58 S-TGLRSTIDKHVESGKPLFGICIGFQILFES   88 (210)
T ss_pred             H-cCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence            3 358888898899999999999999999885

>CHL00101 trpG anthranilate synthase component 2

Probab=96.37  E-value=0.015  Score=51.08  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523          237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR  316 (405)
Q Consensus       237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k  316 (405)
                      ..+.+.|++.|+++.++..+..               .++++...++|+||+-||.+...+   ......++ +....++
T Consensus        13 ~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~~---~~~~~~i~-~~~~~~~   73 (190)
T CHL00101         13 YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPRD---SGISLDVI-SSYAPYI   73 (190)
T ss_pred             HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChHH---CcchHHHH-HHhcCCC
Confidence            4578888888988887655432               122222246899999999754433   22233333 3567899


Q ss_pred             EEEEEchHHHHHHHc
Q 015523          317 IYGAVCSSPIVLHKH  331 (405)
Q Consensus       317 ~i~aic~g~~~La~a  331 (405)
                      ||.+||-|..+|+.+
T Consensus        74 PiLGIClG~Qlla~~   88 (190)
T CHL00101         74 PILGVCLGHQSIGYL   88 (190)
T ss_pred             cEEEEchhHHHHHHH
Confidence            999999999999885

>PRK07567 glutamine amidotransferase; Provisional

Probab=96.35  E-value=0.015  Score=53.17  Aligned_cols=96  Identities=11%  Similarity=0.070  Sum_probs=53.1

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCE---EEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQ---VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~---v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      ++|+|+-.............++|++.+..   ++++....+        . ..      ..+..+||.+||.||..+...
T Consensus         2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~------~~~~~~~dgvIi~Gg~~~~~d   66 (242)
T PRK07567          2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE--------P-LP------DLDLDDYSGVIVGGSPFNVSD   66 (242)
T ss_pred             CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC--------C-CC------CCCHhhccEEEEcCCCCcCCC
Confidence            45766655544332236667777776644   444433222        0 00      112247999999999422211


Q ss_pred             c--ccCh-------HHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           95 L--RDCE-------ILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        95 ~--~~~~-------~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .  ...+       .+.++++.+.+.++||.+||-|.. +|+.+
T Consensus        67 ~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Q-lla~a  109 (242)
T PRK07567         67 PAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVG-TLGHH  109 (242)
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence            1  0111       223455555589999999999766 67765

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=96.34  E-value=0.029  Score=49.44  Aligned_cols=89  Identities=20%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcCC-EEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD   97 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~   97 (405)
                      +|.|+=+.+   .-...+...++..++ ..+++..+..                ....+...+|++||.|| +.+....+
T Consensus         3 ~ilIld~g~---q~~~li~r~~re~g~v~~e~~~~~~~----------------~~~~~~~~~~giIlsGg-p~sv~~~~   62 (198)
T COG0518           3 KILILDFGG---QYLGLIARRLRELGYVYSEIVPYTGD----------------AEELPLDSPDGIIISGG-PMSVYDED   62 (198)
T ss_pred             EEEEEeCCC---cHhHHHHHHHHHcCCceEEEEeCCCC----------------cccccccCCCEEEEcCC-CCCCcccc
Confidence            455554443   333445677777784 4444443332                12333335699999999 44433334


Q ss_pred             --ChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           98 --CEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        98 --~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                        .+...++|++....+++|.+||.|-. +||.
T Consensus        63 ~w~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~   94 (198)
T COG0518          63 PWLPREKDLIKDAGVPGKPVLGICLGHQ-LLAK   94 (198)
T ss_pred             ccchhHHHHHHHhCCCCCCEEEEChhHH-HHHH
Confidence              57888999999999999999999766 5664

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=96.33  E-value=0.016  Score=51.96  Aligned_cols=78  Identities=14%  Similarity=0.133  Sum_probs=53.8

Q ss_pred             HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCC
Q 015523           34 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR  113 (405)
Q Consensus        34 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~  113 (405)
                      ....+.|++.|+++.++..+.. ..         ++  ..+. ..+||+|||.||...+   .+....+++++++.++++
T Consensus        14 ~~~~~~l~~~G~~~~~~~~~~~-~~---------~~--~~~~-~~~~dgliisGGp~~~---~~~~~~~~~i~~~~~~~~   77 (214)
T PRK07765         14 FNLVQYLGQLGVEAEVWRNDDP-RL---------AD--EAAV-AAQFDGVLLSPGPGTP---ERAGASIDMVRACAAAGT   77 (214)
T ss_pred             HHHHHHHHHcCCcEEEEECCCc-CH---------HH--HHHh-hcCCCEEEECCCCCCh---hhcchHHHHHHHHHhCCC
Confidence            4567888999999999876642 00         11  1111 1259999999994222   233456789999999999


Q ss_pred             EEEEEccchHHhhhh
Q 015523          114 LYGAICAAPAVTLLP  128 (405)
Q Consensus       114 ~i~aic~g~~~~La~  128 (405)
                      ||.+||-|.. +|+.
T Consensus        78 PiLGIC~G~Q-lla~   91 (214)
T PRK07765         78 PLLGVCLGHQ-AIGV   91 (214)
T ss_pred             CEEEEccCHH-HHHH
Confidence            9999999866 4554

>PRK05637 anthranilate synthase component II; Provisional

Probab=96.31  E-value=0.019  Score=51.18  Aligned_cols=88  Identities=17%  Similarity=0.155  Sum_probs=58.0

Q ss_pred             cCEEEEEeC-CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIA-NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~-~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      |+||+++=+ |+|.    ..+.+.|++.|+.++++..+.                .++++....+|.||+-||...... 
T Consensus         1 ~~~il~iD~~dsf~----~nl~~~l~~~g~~~~v~~~~~----------------~~~~l~~~~~~~iIlsgGPg~~~d-   59 (208)
T PRK05637          1 MTHVVLIDNHDSFV----YNLVDAFAVAGYKCTVFRNTV----------------PVEEILAANPDLICLSPGPGHPRD-   59 (208)
T ss_pred             CCEEEEEECCcCHH----HHHHHHHHHCCCcEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCCHHH-
Confidence            456666633 3332    347788888999998886543                122222246899999887655433 


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                        .....++++.+. .++||.+||-|..+|+.+
T Consensus        60 --~~~~~~li~~~~-~~~PiLGIClG~Qlla~a   89 (208)
T PRK05637         60 --AGNMMALIDRTL-GQIPLLGICLGFQALLEH   89 (208)
T ss_pred             --hhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence              223456665443 579999999999999886

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=96.24  E-value=0.0074  Score=52.97  Aligned_cols=78  Identities=23%  Similarity=0.282  Sum_probs=58.6

Q ss_pred             HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523          237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR  316 (405)
Q Consensus       237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k  316 (405)
                      ..+...|++.+.+++++..+.. ...           ..+  +..+||.++|+||......   .+..+++++++...++
T Consensus        11 ~~l~~~l~~~~~~~~v~~~~~~-~~~-----------~~~--~~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~~   73 (192)
T PF00117_consen   11 HSLVRALRELGIDVEVVRVDSD-FEE-----------PLE--DLDDYDGIIISGGPGSPYD---IEGLIELIREARERKI   73 (192)
T ss_dssp             HHHHHHHHHTTEEEEEEETTGG-HHH-----------HHH--HTTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCCeEEEEECCCc-hhh-----------hhh--hhcCCCEEEECCcCCcccc---ccccccccccccccce
Confidence            4567888888988888876642 000           011  1378999999999754332   5788888998889999


Q ss_pred             EEEEEchHHHHHHHc
Q 015523          317 IYGAVCSSPIVLHKH  331 (405)
Q Consensus       317 ~i~aic~g~~~La~a  331 (405)
                      ++.+||-|..+|+.+
T Consensus        74 PilGIC~G~Q~la~~   88 (192)
T PF00117_consen   74 PILGICLGHQILAHA   88 (192)
T ss_dssp             EEEEETHHHHHHHHH
T ss_pred             EEEEEeehhhhhHHh
Confidence            999999999999876

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=96.24  E-value=0.0074  Score=52.95  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh--------------hhcCh
Q 015523          237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--------------LQKSR  302 (405)
Q Consensus       237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~--------------~~~~~  302 (405)
                      ......|+..|+.+.++..... .            ..+.+ ....+|.|++|||......              ...+.
T Consensus        22 ~~~~~~l~~~G~~~~iv~~~~~-~------------~~~~~-~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~   87 (189)
T cd01745          22 QYYVDAVRKAGGLPVLLPPVDD-E------------EDLEQ-YLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDA   87 (189)
T ss_pred             HHHHHHHHHCCCEEEEeCCCCC-h------------HHHHH-HHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHH
Confidence            3567788888888777754432 0            01111 1156899999999632111              11223


Q ss_pred             HHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          303 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       303 ~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ...++++.+.+.+++|.+||.|..+|+.+
T Consensus        88 ~~~~~~~~~~~~~~PilgiC~G~Q~l~~~  116 (189)
T cd01745          88 FELALLRAALERGKPILGICRGMQLLNVA  116 (189)
T ss_pred             HHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence            55889999999999999999999998875

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK00758 GMP synthase subunit A; Validated

Probab=96.24  E-value=0.014  Score=50.87  Aligned_cols=68  Identities=22%  Similarity=0.292  Sum_probs=46.8

Q ss_pred             HHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCc-cEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523          239 IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVY-DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  317 (405)
Q Consensus       239 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~-D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~  317 (405)
                      +.+.|++.|+++.++..+.                ..+++  .++ |++++|||. +..   ....+.++++   +.++|
T Consensus        15 i~~~l~~~g~~~~~~~~~~----------------~~~~l--~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P   69 (184)
T PRK00758         15 IHRTLRYLGVDAKIIPNTT----------------PVEEI--KAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP   69 (184)
T ss_pred             HHHHHHHcCCcEEEEECCC----------------CHHHH--hhcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence            4677788888877665332                12333  445 999999995 322   2234556665   45899


Q ss_pred             EEEEchHHHHHHHc
Q 015523          318 YGAVCSSPIVLHKH  331 (405)
Q Consensus       318 i~aic~g~~~La~a  331 (405)
                      |.+||.|..+|+.+
T Consensus        70 ilGIC~G~Q~L~~a   83 (184)
T PRK00758         70 ILGICLGHQLIAKA   83 (184)
T ss_pred             EEEEeHHHHHHHHh
Confidence            99999999999886

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=96.16  E-value=0.034  Score=53.99  Aligned_cols=88  Identities=15%  Similarity=0.114  Sum_probs=62.8

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      .+||+++=+ |+-    ..+...|.+.|+++.++..+.                +.+++...++|.|+++||.+++..  
T Consensus       192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~dgIilSgGPg~p~~--  248 (382)
T CHL00197        192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS----------------PYQDILSYQPDGILLSNGPGDPSA--  248 (382)
T ss_pred             CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC----------------CHHHHhccCCCEEEEcCCCCChhH--
Confidence            367777755 544    248888889999998884332                123333346899999999754432  


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       ....++.++++.+.+.||.+||-|-.+|+.+
T Consensus       249 -~~~~i~~i~~~~~~~~PilGIClGhQlLa~a  279 (382)
T CHL00197        249 -IHYGIKTVKKLLKYNIPIFGICMGHQILSLA  279 (382)
T ss_pred             -HHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence             3456777787777789999999999999865

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=96.14  E-value=0.015  Score=57.58  Aligned_cols=86  Identities=22%  Similarity=0.173  Sum_probs=57.9

Q ss_pred             cEEEEEecC--CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh--h
Q 015523           18 LNVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--V   93 (405)
Q Consensus        18 ~ki~ill~~--g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~--~   93 (405)
                      .||+|--=.  .|.-.|   -++.|+++ +++..+||-.+                 +.++  ++|+|++|||++..  .
T Consensus       234 ~~iavA~D~AF~FyY~e---nl~~L~~~-aelv~fSPl~~-----------------~~lp--~~D~l~lpGG~~e~~~~  290 (433)
T PRK13896        234 PTVAVARDAAFCFRYPA---TIERLRER-ADVVTFSPVAG-----------------DPLP--DCDGVYLPGGYPELHAD  290 (433)
T ss_pred             CeEEEEEcCccceeCHH---HHHHHHhc-CcEEEEcCCCC-----------------CCCC--CCCEEEeCCCchhhHHH
Confidence            578876522  222223   25677777 88888887543                 1233  68999999997432  2


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+..+... +.|+++.++|++|.++|.| ..+|++
T Consensus       291 ~L~~n~~~-~~i~~~~~~G~pi~aeCGG-~q~L~~  323 (433)
T PRK13896        291 ALADSPAL-DELADRAADGLPVLGECGG-LMALAE  323 (433)
T ss_pred             HHHhCCcH-HHHHHHHHCCCcEEEEehH-HHHhhc
Confidence            23344444 8899999999999999995 546775

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=96.14  E-value=0.023  Score=50.03  Aligned_cols=86  Identities=14%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             EeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHH
Q 015523          226 PIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILK  305 (405)
Q Consensus       226 l~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~  305 (405)
                      ++.|..+... ..+.+.|++.++++.++..+..               .++++...++|.||+-||...+..   .....
T Consensus         3 l~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iIlsgGP~~p~~---~~~~~   63 (195)
T PRK07649          3 LMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV---------------TISDIENMKPDFLMISPGPCSPNE---AGISM   63 (195)
T ss_pred             EEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChHh---CCCch
Confidence            4444443333 3478889999999988875532               122222246899999999755443   23355


Q ss_pred             HHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          306 KLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       306 ~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +.++. +..++||.+||-|..+|+.+
T Consensus        64 ~~i~~-~~~~~PvLGIClG~Qlla~~   88 (195)
T PRK07649         64 EVIRY-FAGKIPIFGVCLGHQSIAQV   88 (195)
T ss_pred             HHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            56664 35789999999999999886

>PLN02335 anthranilate synthase

Probab=96.12  E-value=0.026  Score=50.83  Aligned_cols=90  Identities=8%  Similarity=0.027  Sum_probs=59.4

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      .++|+|+  |..+ .-...+.+.|++.|+.++++..+..               .++++...++|+||+-||...+..  
T Consensus        18 ~~~ilvi--D~~d-sft~~i~~~L~~~g~~~~v~~~~~~---------------~~~~~~~~~~d~iVisgGPg~p~d--   77 (222)
T PLN02335         18 NGPIIVI--DNYD-SFTYNLCQYMGELGCHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGTPQD--   77 (222)
T ss_pred             cCcEEEE--ECCC-CHHHHHHHHHHHCCCcEEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh--
Confidence            4677777  4322 2234588889999999999855421               122222246899999999755443  


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       .....+++++ ....+||.+||-|..+|+.+
T Consensus        78 -~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a  107 (222)
T PLN02335         78 -SGISLQTVLE-LGPLVPLFGVCMGLQCIGEA  107 (222)
T ss_pred             -ccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence             2234566653 45679999999999999875

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=96.08  E-value=0.016  Score=50.79  Aligned_cols=79  Identities=19%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHH
Q 015523           30 EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA  109 (405)
Q Consensus        30 ~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~  109 (405)
                      ..-...+.+.|++.|++++++..+..                .++....++|.||+|||. ...   .+.....++++..
T Consensus         8 ~~~~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~-~~~---~~~~~~~~i~~~~   67 (188)
T TIGR00888         8 SQYTQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGP-SSV---YAENAPRADEKIF   67 (188)
T ss_pred             chHHHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCC-CCc---CcCCchHHHHHHH
Confidence            34445667888888999988865431                111211246799999994 222   1223467888889


Q ss_pred             HcCCEEEEEccchHHhhhhc
Q 015523          110 EEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       110 ~~~~~i~aic~g~~~~La~a  129 (405)
                      +.++||.+||.|-. +|+.+
T Consensus        68 ~~~~PilGIC~G~Q-ll~~~   86 (188)
T TIGR00888        68 ELGVPVLGICYGMQ-LMAKQ   86 (188)
T ss_pred             hCCCCEEEECHHHH-HHHHh
Confidence            99999999999766 57754

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=96.07  E-value=0.033  Score=56.66  Aligned_cols=89  Identities=12%  Similarity=0.092  Sum_probs=59.3

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc-
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~-   94 (405)
                      ..++|+|+=|-.=+..+   ..+.|++.++++.++.. .                  .++  .++|.||+||+...... 
T Consensus         5 ~~~~i~iiDyG~GN~~s---l~~al~~~G~~v~~v~~-~------------------~~l--~~~D~lIlpG~gs~~~~m   60 (538)
T PLN02617          5 ADSEVTLLDYGAGNVRS---VRNAIRHLGFTIKDVQT-P------------------EDI--LNADRLIFPGVGAFGSAM   60 (538)
T ss_pred             CCCeEEEEECCCCCHHH---HHHHHHHCCCeEEEECC-h------------------hhh--ccCCEEEECCCCCHHHHH
Confidence            45688877655444444   47777888888866632 1                  123  36999999996321111 


Q ss_pred             -cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           95 -LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        95 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                       ......+.+.|+++.+.++|+.+||.|.. +|++.
T Consensus        61 ~~L~~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~   95 (538)
T PLN02617         61 DVLNNRGMAEALREYIQNDRPFLGICLGLQ-LLFES   95 (538)
T ss_pred             HHHHHcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence             11233477889999999999999999755 78864

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=96.06  E-value=0.013  Score=51.22  Aligned_cols=86  Identities=8%  Similarity=0.057  Sum_probs=56.1

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  101 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~  101 (405)
                      ||+.|+++... ..+.+.|++.++++.++..+.. +              ++++...+||.||+-||...+.   +....
T Consensus         2 il~idn~Dsft-~nl~~~l~~~g~~v~v~~~~~~-~--------------~~~~~~~~~d~iils~GPg~p~---~~~~~   62 (187)
T PRK08007          2 ILLIDNYDSFT-WNLYQYFCELGADVLVKRNDAL-T--------------LADIDALKPQKIVISPGPCTPD---EAGIS   62 (187)
T ss_pred             EEEEECCCccH-HHHHHHHHHCCCcEEEEeCCCC-C--------------HHHHHhcCCCEEEEcCCCCChH---HCCcc
Confidence            56666666555 3467788888999988865532 1              1122212589999999843333   33445


Q ss_pred             HHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523          102 KKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus       102 ~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ++.++. +..++||.+||-|-. +|+.
T Consensus        63 ~~~~~~-~~~~~PiLGIClG~Q-~la~   87 (187)
T PRK08007         63 LDVIRH-YAGRLPILGVCLGHQ-AMAQ   87 (187)
T ss_pred             HHHHHH-hcCCCCEEEECHHHH-HHHH
Confidence            566665 678899999999765 5665

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=96.06  E-value=0.011  Score=52.25  Aligned_cols=76  Identities=18%  Similarity=0.179  Sum_probs=50.7

Q ss_pred             hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc---cccChHHHHHHHH
Q 015523           31 MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR---LRDCEILKKITSK  107 (405)
Q Consensus        31 ~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~---~~~~~~~~~~l~~  107 (405)
                      ..+..+.+.|+..+.+++++..+.                   ++  .++|.||+||+......   +.... +..++++
T Consensus         9 gn~~~l~~~l~~~g~~v~v~~~~~-------------------~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~   66 (196)
T TIGR01855         9 GNLGSVKRALKRVGAEPVVVKDSK-------------------EA--ELADKLILPGVGAFGAAMARLRENG-LDLFVEL   66 (196)
T ss_pred             cHHHHHHHHHHHCCCcEEEEcCHH-------------------Hh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHH
Confidence            456677888888888888876221                   12  25899999995211111   11112 3444477


Q ss_pred             HHHcCCEEEEEccchHHhhhhc
Q 015523          108 QAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       108 ~~~~~~~i~aic~g~~~~La~a  129 (405)
                      +++.++||.++|.|.. +|+++
T Consensus        67 ~~~~~~pvlGiC~G~Q-ll~~~   87 (196)
T TIGR01855        67 VVRLGKPVLGICLGMQ-LLFER   87 (196)
T ss_pred             HHhCCCCEEEECHHHH-Hhhhc
Confidence            8899999999999755 78887

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK13566 anthranilate synthase; Provisional

Probab=96.05  E-value=0.072  Score=56.22  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             CCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          218 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      ...+||+|+=+..   .-...+.+.|+..|+++.++..+..             ...++   ..++|.||+-||.+... 
T Consensus       524 ~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~-------------~~~~~---~~~~DgVVLsgGpgsp~-  583 (720)
T PRK13566        524 GEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA-------------EEMLD---RVNPDLVVLSPGPGRPS-  583 (720)
T ss_pred             CCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC-------------hhHhh---hcCCCEEEECCCCCChh-
Confidence            3457887776653   3356788999999999998877642             11111   14689999877654332 


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                         +..+.+++++..++++||.+||-|..+|+.+
T Consensus       584 ---d~~~~~lI~~a~~~~iPILGIClG~QlLa~a  614 (720)
T PRK13566        584 ---DFDCKATIDAALARNLPIFGVCLGLQAIVEA  614 (720)
T ss_pred             ---hCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence               3347899999999999999999999999876

>PLN02327 CTP synthase

Probab=95.98  E-value=0.03  Score=56.39  Aligned_cols=233  Identities=13%  Similarity=0.046  Sum_probs=121.4

Q ss_pred             CcccEEEE-cCCchhhhccccChHHHHHHHHHHHc-CC-EEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-----
Q 015523           78 QVFDLIAL-PGGMPGSVRLRDCEILKKITSKQAEE-KR-LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-----  149 (405)
Q Consensus        78 ~~~d~lii-pgg~~~~~~~~~~~~~~~~l~~~~~~-~~-~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-----  149 (405)
                      .++|++|+ .||.  ..+ .++.++++.+|++..+ ++ -++.+-..-..+|..+|=++-|. |=|-  ...|++     
T Consensus       138 ~~~dv~i~EiGGT--VGD-iEs~pflEA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKP-tQhs--vk~Lr~~Gi~p  211 (557)
T PLN02327        138 GPADVCVIELGGT--VGD-IESMPFIEALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKP-TQHS--VRGLRALGLTP  211 (557)
T ss_pred             CCCCEEEEEeCce--eec-ccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCc-hHHH--HHHHHhCCCCC
Confidence            36899998 4663  222 2456777777776543 22 22222221233455566554433 1121  112222     


Q ss_pred             --------Ccccc----C----cEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhccccc---ccCccccccc
Q 015523          150 --------FWAVK----S----NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN---ADNSLKKEEF  210 (405)
Q Consensus       150 --------~~~~~----~----~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~---~~~~~~~~~~  210 (405)
                              .+..+    +    --|.-.++|.+-...+.++.=+.+-+    +.+.+.+.+.|.++.   .++...|..+
T Consensus       212 d~l~~Rs~~~l~~~~~~Kia~fc~v~~~~Vi~~~d~~~iY~vPl~l~~----q~l~~~i~~~l~l~~~~~~~~~~~W~~~  287 (557)
T PLN02327        212 HILACRSTKPLEENVKEKLSQFCHVPAENILNLHDVSNIWHVPLLLRD----QKAHEAILKVLNLLSVAREPDLEEWTAR  287 (557)
T ss_pred             CEEEEecCCCCCHHHHHHHHHhcCCCHHHEEEcCCCchHhhhhHHHHH----CCcHHHHHHHcCCCCCCCCCChHHHHHH
Confidence                    00000    0    02233567888777776665555544    445566777777762   2221233333


Q ss_pred             cccccccCCcCEEEEEe-CCCCcHHHHHHHHHHHHhCC----CeEEEEeecCCceeecCCCcEEee---CCCccCcCCCC
Q 015523          211 NEVEWFFDRMPRVLIPI-ANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIA---DKSISDAAESV  282 (405)
Q Consensus       211 ~~~~~~~~~~~~V~il~-~~g~~~~e~~~~~~~l~~~~----~~v~~vs~~~~~~v~~~~g~~v~~---~~~l~~~~~~~  282 (405)
                      -..........+|+++- |....+. ...+.+.|..++    .++++...+.. .+.. .+..-.|   +...+.+  .+
T Consensus       288 ~~~~~~~~~~v~IalVGKY~~l~DA-Y~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~-~~~~~~~~~y~~~~~~L--~~  362 (557)
T PLN02327        288 AESCDNLTEPVRIAMVGKYTGLSDS-YLSVLKALLHASVACSRKLVIDWVAAS-DLED-ETAKETPDAYAAAWKLL--KG  362 (557)
T ss_pred             HHHHhCCCCceEEEEEecccCCcHh-HHHHHHHHHHHHHHcCCeeEEEEEchh-hcCC-cccccccchhhhhHHhh--cc
Confidence            22111223356777775 3344443 566777777764    56666555543 2211 1100001   0111223  78


Q ss_pred             ccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523          283 YDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH  329 (405)
Q Consensus       283 ~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La  329 (405)
                      +|.|++|||.+. .   .....+..++.+..+++|+.+||.|..+++
T Consensus       363 ~DGIvvpGGfG~-~---~~~G~i~ai~~are~~iP~LGIClGmQl~v  405 (557)
T PLN02327        363 ADGILVPGGFGD-R---GVEGKILAAKYARENKVPYLGICLGMQIAV  405 (557)
T ss_pred             CCEEEeCCCCCC-c---ccccHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence            999999999743 2   223445667778889999999999999774

>TIGR00337 PyrG CTP synthase

Probab=95.91  E-value=0.038  Score=55.46  Aligned_cols=224  Identities=13%  Similarity=0.071  Sum_probs=120.8

Q ss_pred             cccEEEE-cCCchhhhccccChHHHHHHHHHHHc-CC-EEEEEccchHHhhhhcCCCCCcceeeccCccccCCC------
Q 015523           79 VFDLIAL-PGGMPGSVRLRDCEILKKITSKQAEE-KR-LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT------  149 (405)
Q Consensus        79 ~~d~lii-pgg~~~~~~~~~~~~~~~~l~~~~~~-~~-~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~------  149 (405)
                      ++|++|+ .||.  ..+ .++.++++.+|++..+ ++ -++.+-..-..+|..+|=++-|. |=|-  ...|++      
T Consensus       133 ~~d~~i~EiGGT--vGD-iEs~pf~ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKP-tQhs--v~~lr~~Gi~pd  206 (525)
T TIGR00337       133 GPDVVIVEIGGT--VGD-IESLPFLEAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKP-TQHS--VKELRSLGIQPD  206 (525)
T ss_pred             CCCEEEEEeCCc--ccc-ccccHHHHHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCc-hHHH--HHHHHhCCCCCC
Confidence            6899888 4663  222 2456777778776543 22 23333221233455566554433 1121  111221      


Q ss_pred             -------Ccccc----C----cEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhccccc-ccCcccccccccc
Q 015523          150 -------FWAVK----S----NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNSLKKEEFNEV  213 (405)
Q Consensus       150 -------~~~~~----~----~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~-~~~~~~~~~~~~~  213 (405)
                             .+..+    +    --|...++|.+-...+.++.=+.+-+    +.+.+.+.+.|.++. .++...|..+-..
T Consensus       207 ~~~~R~~~~l~~~~~~Kia~f~~v~~~~vi~~~d~~~iY~vPl~l~~----q~~~~~i~~~l~l~~~~~~~~~W~~~~~~  282 (525)
T TIGR00337       207 IIICRSSEPLDPSTKDKIALFCDVEEEAVINAHDVSSIYEVPLLLLK----QGLDDYLCRRLNLNCDEADLSEWEELVEK  282 (525)
T ss_pred             EEEEecCCCCCHHHHHHHHhccCCCHHHEEEcCCCccHhhhhHHHHH----CChHHHHHHHhCCCCCCCcHHHHHHHHHH
Confidence                   00000    0    02334578888887776666555444    455667778887764 2222233333222


Q ss_pred             ccccCCcCEEEEEe-CCCCcHHHHHHHHHHHHhCCC----eEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEE
Q 015523          214 EWFFDRMPRVLIPI-ANGSEEIEIVTIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIIL  288 (405)
Q Consensus       214 ~~~~~~~~~V~il~-~~g~~~~e~~~~~~~l~~~~~----~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~liv  288 (405)
                      ........+|+++- |....+ ......+.|..+++    ++.+...+.. .+...         ..+.+  .++|.|++
T Consensus       283 ~~~~~~~v~IalVGKY~~~~d-aY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~~~---------~~~~L--~~~dGIiL  349 (525)
T TIGR00337       283 FINPKHEVTIGIVGKYVELKD-SYLSVIEALKHAGAKLDTKVNIKWIDSE-DLEEE---------GAEFL--KGVDGILV  349 (525)
T ss_pred             hhCCCCCcEEEEEeCCcCCHH-HHHHHHHHHHhCccccCCEEEEEEecHH-Hhhhh---------hhhhh--cCCCEEEe
Confidence            11122357888875 333333 35688899998885    3444433322 11110         00112  56899999


Q ss_pred             cCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523          289 PGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH  329 (405)
Q Consensus       289 pgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La  329 (405)
                      |||.+. .   ..+..++.++.+..++.|+.+||-|..+++
T Consensus       350 pGG~G~-~---~~~g~i~ai~~a~e~~iP~LGIClG~Qll~  386 (525)
T TIGR00337       350 PGGFGE-R---GVEGKILAIKYARENNIPFLGICLGMQLAV  386 (525)
T ss_pred             CCCCCC-h---hhcChHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence            999743 2   233455677878889999999999998774

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=95.91  E-value=0.017  Score=50.73  Aligned_cols=87  Identities=8%  Similarity=0.059  Sum_probs=55.6

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  101 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~  101 (405)
                      ||+.|+.+... ..+++.|++.+++++++..+..               .++++...++|.||+-||...+.   +....
T Consensus         2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~---~~~~~   62 (191)
T PRK06774          2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPN---EAGIS   62 (191)
T ss_pred             EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChH---hCCCc
Confidence            45555555443 4567888888999998875532               11122222589999999943332   23334


Q ss_pred             HHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          102 KKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       102 ~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ..+++ .++.++||.+||-|-. +|+.+
T Consensus        63 ~~~i~-~~~~~~PiLGIC~G~Q-lla~~   88 (191)
T PRK06774         63 LAVIR-HFADKLPILGVCLGHQ-ALGQA   88 (191)
T ss_pred             hHHHH-HhcCCCCEEEECHHHH-HHHHH
Confidence            55565 4678999999999766 57764

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=95.90  E-value=0.048  Score=52.58  Aligned_cols=86  Identities=15%  Similarity=0.129  Sum_probs=60.8

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      ++|+++=+ |+-    ......|.+.|+.+.++-.+.                +++++....+|.|+++||..++.   .
T Consensus       174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~pDGIiLSgGPgdp~---~  229 (358)
T TIGR01368       174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT----------------DAEEIKKYNPDGIFLSNGPGDPA---A  229 (358)
T ss_pred             cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC----------------CHHHHHhhCCCEEEECCCCCCHH---H
Confidence            46776644 544    257888888999988774332                12333223469999999965443   3


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ....+++++++.+ ++||.+||-|..+|+.+
T Consensus       230 ~~~~i~~i~~~~~-~~PILGIClG~QlLa~a  259 (358)
T TIGR01368       230 VEPAIETIRKLLE-KIPIFGICLGHQLLALA  259 (358)
T ss_pred             HHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence            4567888888887 99999999999999875

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=95.86  E-value=0.048  Score=52.52  Aligned_cols=92  Identities=24%  Similarity=0.226  Sum_probs=64.4

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhc---CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~---~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      |+|+|+--+|.....+...++.|++.   .|.|..++.+.   +.        . ..+.    .+++++|+|||. ....
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~---l~--------~-~pw~----~~~~LlV~PGG~-d~~y   63 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE---LL--------N-EPWQ----SKCALLVMPGGA-DLPY   63 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH---hh--------c-Cccc----cCCcEEEECCCc-chHH
Confidence            57889989999999999999999863   46676665432   11        1 1111    258999999994 3322


Q ss_pred             cc-cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           95 LR-DCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        95 ~~-~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .. -++.-.+.||++.++|+-..++|.| ++ ++.
T Consensus        64 ~~~l~~~g~~~Ir~fV~~GG~YlGiCAG-aY-~as   96 (367)
T PF09825_consen   64 CRSLNGEGNRRIRQFVENGGGYLGICAG-AY-YAS   96 (367)
T ss_pred             HHhhChHHHHHHHHHHHcCCcEEEECcc-hh-hhc
Confidence            22 2455578899999999999999996 53 554

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=95.83  E-value=0.022  Score=50.12  Aligned_cols=86  Identities=10%  Similarity=0.063  Sum_probs=56.0

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  101 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~  101 (405)
                      ||+-|+++... ....+.|++.|+.++++..+.. ..        .   .+.+.   ++|.+++-||..++.   ++...
T Consensus         2 il~id~~dsft-~~~~~~l~~~g~~~~~~~~~~~-~~--------~---~~~~~---~~~~iilsgGp~~~~---~~~~~   62 (193)
T PRK08857          2 LLMIDNYDSFT-YNLYQYFCELGAQVKVVRNDEI-DI--------D---GIEAL---NPTHLVISPGPCTPN---EAGIS   62 (193)
T ss_pred             EEEEECCCCcH-HHHHHHHHHCCCcEEEEECCCC-CH--------H---HHhhC---CCCEEEEeCCCCChH---HCcch
Confidence            45556555544 3478889999999999976643 10        0   01222   478999988832232   23344


Q ss_pred             HHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523          102 KKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus       102 ~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+++++ ++.+.||.+||-|.. +|+.
T Consensus        63 ~~~i~~-~~~~~PiLGIClG~Q-lia~   87 (193)
T PRK08857         63 LQAIEH-FAGKLPILGVCLGHQ-AIAQ   87 (193)
T ss_pred             HHHHHH-hcCCCCEEEEcHHHH-HHHH
Confidence            567765 678999999999766 5665

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.82  E-value=0.019  Score=50.78  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=50.2

Q ss_pred             HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc--ccChHHHHHHHHHHH
Q 015523           33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RDCEILKKITSKQAE  110 (405)
Q Consensus        33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~--~~~~~~~~~l~~~~~  110 (405)
                      +..+...|++.+++++++...                   +++.  ++|.||+||+.......  .....+.++|+++.+
T Consensus        12 ~~~~~~~l~~~g~~v~~~~~~-------------------~~l~--~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~   70 (199)
T PRK13181         12 LRSVANALKRLGVEAVVSSDP-------------------EEIA--GADKVILPGVGAFGQAMRSLRESGLDEALKEHVE   70 (199)
T ss_pred             HHHHHHHHHHCCCcEEEEcCh-------------------HHhc--cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHH
Confidence            344566888888888877211                   1232  58999999962111111  122356788999999


Q ss_pred             cCCEEEEEccchHHhhhhc
Q 015523          111 EKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       111 ~~~~i~aic~g~~~~La~a  129 (405)
                      .++||.++|.|-. +|+.+
T Consensus        71 ~~~PvlGiC~G~Q-ll~~~   88 (199)
T PRK13181         71 KKQPVLGICLGMQ-LLFES   88 (199)
T ss_pred             CCCCEEEECHhHH-Hhhhh
Confidence            9999999999655 68875

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.79  E-value=0.024  Score=50.20  Aligned_cols=84  Identities=17%  Similarity=0.159  Sum_probs=51.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hh
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQ  299 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~  299 (405)
                      |+|+=|-.-+...   +.+.|++.++++.++...                   +++  .++|.||+||+......   +.
T Consensus         2 i~iid~g~~n~~~---v~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~lilPG~g~~~~~~~~l~   57 (201)
T PRK13152          2 IALIDYKAGNLNS---VAKAFEKIGAINFIAKNP-------------------KDL--QKADKLLLPGVGSFKEAMKNLK   57 (201)
T ss_pred             EEEEECCCCcHHH---HHHHHHHCCCeEEEECCH-------------------HHH--cCCCEEEECCCCchHHHHHHHH
Confidence            4444444334444   446666677776664321                   122  45899999997532221   22


Q ss_pred             cChHHHHHHHHH-hhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQ-KVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~-~~~~k~i~aic~g~~~La~a  331 (405)
                      ... +...|+++ .+++++|.+||.|..+|+.+
T Consensus        58 ~~~-~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         58 ELG-FIEALKEQVLVQKKPILGICLGMQLFLER   89 (201)
T ss_pred             HcC-cHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence            222 34555554 58899999999999999987

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=95.79  E-value=0.051  Score=48.56  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=63.8

Q ss_pred             CCcEEEEEecCCCchhh-HHHHHHHHHhc-CCEEEEEecCCCceeEeccCcEEecCcc-cCCCCCCcccEEEEcCCchhh
Q 015523           16 FALNVLVPVGFGTEEME-AVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTS-ISNCSHQVFDLIALPGGMPGS   92 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e-~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~-~~~~~~~~~d~liipgg~~~~   92 (405)
                      ...||+++-.......+ +....+.|++. ++++..+....              +.. .+.+  ...|+|++|||. ..
T Consensus        30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~--------------~~~~~~~l--~~ad~I~l~GG~-~~   92 (212)
T cd03146          30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD--------------TEDPLDAL--LEADVIYVGGGN-TF   92 (212)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC--------------cccHHHHH--hcCCEEEECCch-HH
Confidence            35689998877654433 55677888888 88877665321              111 1223  268999999993 21


Q ss_pred             ---hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           93 ---VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        93 ---~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                         ..+ ....+.+.|++.++++++++++|.| +.++.+.
T Consensus        93 ~~~~~l-~~~~l~~~l~~~~~~g~~i~G~SAG-a~i~~~~  130 (212)
T cd03146          93 NLLAQW-REHGLDAILKAALERGVVYIGWSAG-SNCWFPS  130 (212)
T ss_pred             HHHHHH-HHcCHHHHHHHHHHCCCEEEEECHh-HHhhCCC
Confidence               222 2336778889889999999999996 5467764

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=95.76  E-value=0.1  Score=55.03  Aligned_cols=90  Identities=16%  Similarity=0.164  Sum_probs=64.4

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      ..++|+|+=+.   +.-...+.+.|++.|+++.++.....             +..++   ..++|.||+-||.+...  
T Consensus       515 ~~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~-------------~~~~~---~~~~DgLILsgGPGsp~--  573 (717)
T TIGR01815       515 EGRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA-------------EAAFD---ERRPDLVVLSPGPGRPA--  573 (717)
T ss_pred             CCCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC-------------hhhhh---hcCCCEEEEcCCCCCch--
Confidence            45788888544   23356788999999999987754421             00111   14689999966654332  


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                        +....++|++....++||.+||-|..+|+.+
T Consensus       574 --d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a  604 (717)
T TIGR01815       574 --DFDVAGTIDAALARGLPVFGVCLGLQGMVEA  604 (717)
T ss_pred             --hcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence              3356788888889999999999999999886

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK05670 anthranilate synthase component II; Provisional

Probab=95.71  E-value=0.028  Score=49.23  Aligned_cols=87  Identities=15%  Similarity=0.063  Sum_probs=55.2

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  101 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~  101 (405)
                      ||+.|.. ++=...+.+.|++.|++++++..+.. .           ...++..   ++|.||+.||..+..   +....
T Consensus         2 iliid~~-d~f~~~i~~~l~~~g~~~~v~~~~~~-~-----------~~~~~~~---~~dglIlsgGpg~~~---d~~~~   62 (189)
T PRK05670          2 ILLIDNY-DSFTYNLVQYLGELGAEVVVYRNDEI-T-----------LEEIEAL---NPDAIVLSPGPGTPA---EAGIS   62 (189)
T ss_pred             EEEEECC-CchHHHHHHHHHHCCCcEEEEECCCC-C-----------HHHHHhC---CCCEEEEcCCCCChH---HcchH
Confidence            3444433 34446678889999999999876542 0           0011222   489999988832232   22345


Q ss_pred             HHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          102 KKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       102 ~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .+++++ ...++||.+||-|-. +|+.+
T Consensus        63 ~~~l~~-~~~~~PvLGIClG~Q-lla~a   88 (189)
T PRK05670         63 LELIRE-FAGKVPILGVCLGHQ-AIGEA   88 (189)
T ss_pred             HHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            667765 567899999999765 57654

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=95.70  E-value=0.027  Score=56.78  Aligned_cols=50  Identities=18%  Similarity=0.106  Sum_probs=38.0

Q ss_pred             cccEEEEcCCchhhhcc--ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           79 VFDLIALPGGMPGSVRL--RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~--~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ++|+|++|||.+....+  ..+..+.+.|+++.++|++|.++|.| ..+|.+.
T Consensus       284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG-~q~Lg~~  335 (475)
T TIGR00313       284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGG-YQMLGKE  335 (475)
T ss_pred             cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHH-HHHhhhh
Confidence            68999999996333222  24556788999999999999999995 5567763

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.69  E-value=0.027  Score=49.68  Aligned_cols=83  Identities=16%  Similarity=0.096  Sum_probs=49.8

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC-Cchhhhcc-
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG-GMPGSVRL-   95 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg-g~~~~~~~-   95 (405)
                      |||+|+=|-.-+.   ..+...|++.++++.++...                   +++.  ++|.||+|| |.. .... 
T Consensus         1 m~i~iid~g~gn~---~s~~~~l~~~g~~~~~v~~~-------------------~~~~--~~d~iIlPG~G~~-~~~~~   55 (196)
T PRK13170          1 MNVVIIDTGCANL---SSVKFAIERLGYEPVVSRDP-------------------DVIL--AADKLFLPGVGTA-QAAMD   55 (196)
T ss_pred             CeEEEEeCCCchH---HHHHHHHHHCCCeEEEECCH-------------------HHhC--CCCEEEECCCCch-HHHHH
Confidence            4677775444333   33456788888888887422                   1232  479999999 431 1111 


Q ss_pred             -ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 -RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 -~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                       .....+.+.+++   .++||.+||.|-. +|+.+
T Consensus        56 ~l~~~~l~~~i~~---~~~PilGIClG~Q-ll~~~   86 (196)
T PRK13170         56 QLRERELIDLIKA---CTQPVLGICLGMQ-LLGER   86 (196)
T ss_pred             HHHHcChHHHHHH---cCCCEEEECHHHH-HHhhh
Confidence             111234455554   4799999999655 67765

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=95.66  E-value=0.021  Score=57.57  Aligned_cols=50  Identities=22%  Similarity=0.302  Sum_probs=40.7

Q ss_pred             CCccEEEEcCCccchHhh--hcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          281 SVYDLIILPGGVAGAERL--QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       281 ~~~D~livpgG~~~~~~~--~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      +++|+|++|||......+  ..+..+.+.|+++.++|++|.++|.|-.+|.+
T Consensus       283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~  334 (475)
T TIGR00313       283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK  334 (475)
T ss_pred             ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence            468999999997433332  24556888999999999999999999999998

>PLN02335 anthranilate synthase

Probab=95.62  E-value=0.033  Score=50.15  Aligned_cols=90  Identities=7%  Similarity=-0.021  Sum_probs=56.0

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      +.+||.|+  |+. ++--..+.+.|++.|++++++..+.. +              +.+.....||.|||-||...+.  
T Consensus        17 ~~~~ilvi--D~~-dsft~~i~~~L~~~g~~~~v~~~~~~-~--------------~~~~~~~~~d~iVisgGPg~p~--   76 (222)
T PLN02335         17 QNGPIIVI--DNY-DSFTYNLCQYMGELGCHFEVYRNDEL-T--------------VEELKRKNPRGVLISPGPGTPQ--   76 (222)
T ss_pred             ccCcEEEE--ECC-CCHHHHHHHHHHHCCCcEEEEECCCC-C--------------HHHHHhcCCCEEEEcCCCCChh--
Confidence            34577777  432 33335678899999999999965431 1              1111112589999999943232  


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                       +.....+++++ ....+||.+||-|.. +|+.
T Consensus        77 -d~~~~~~~~~~-~~~~~PiLGIClG~Q-lLa~  106 (222)
T PLN02335         77 -DSGISLQTVLE-LGPLVPLFGVCMGLQ-CIGE  106 (222)
T ss_pred             -hccchHHHHHH-hCCCCCEEEecHHHH-HHHH
Confidence             22234555553 456799999999766 5665

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=95.50  E-value=0.038  Score=48.38  Aligned_cols=87  Identities=13%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  101 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~  101 (405)
                      ||+-|..+... ..+.+.|+..++++.++..+.. .              +++....++|.||+-||...+.   +....
T Consensus         2 il~id~~dsft-~~~~~~l~~~g~~v~v~~~~~~-~--------------~~~~~~~~~d~iilsgGpg~p~---~~~~~   62 (188)
T TIGR00566         2 VLMIDNYDSFT-YNLVQYFCELGAEVVVKRNDSL-T--------------LQEIEALLPLLIVISPGPCTPN---EAGIS   62 (188)
T ss_pred             EEEEECCcCHH-HHHHHHHHHcCCceEEEECCCC-C--------------HHHHHhcCCCEEEEcCCCCChh---hcchh
Confidence            34444444333 3456777777888887765532 1              1112212489999988832232   22334


Q ss_pred             HHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          102 KKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       102 ~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .++++++ ++++||.+||-|-. +|+.+
T Consensus        63 ~~~i~~~-~~~~PvLGIC~G~Q-ll~~~   88 (188)
T TIGR00566        63 LEAIRHF-AGKLPILGVCLGHQ-AMGQA   88 (188)
T ss_pred             HHHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence            6777776 67899999999765 56653

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=95.50  E-value=0.051  Score=52.32  Aligned_cols=86  Identities=15%  Similarity=0.127  Sum_probs=60.3

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      ++|+++=+ |+    -....+.|.+.|+.+.++-.+.                .++++....+|.|+++||..++.   +
T Consensus       168 ~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIiLsgGPgdp~---~  223 (354)
T PRK12838        168 KHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDT----------------SLEEIKNLNPDGIVLSNGPGDPK---E  223 (354)
T ss_pred             CEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEEcCCCCChH---H
Confidence            56666644 43    2557788888899998885432                12222224689999999975433   2


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ....+++++++..+ +||.+||-|..+|+.+
T Consensus       224 ~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a  253 (354)
T PRK12838        224 LQPYLPEIKKLISS-YPILGICLGHQLIALA  253 (354)
T ss_pred             hHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence            34567888888776 9999999999999865

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=95.48  E-value=0.02  Score=50.19  Aligned_cols=78  Identities=24%  Similarity=0.303  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcC
Q 015523           33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK  112 (405)
Q Consensus        33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~  112 (405)
                      ...+...|++.+.+++++..+.. ...           ..++  ..+||.++|+||.....   +.+...++++++.+.+
T Consensus        10 ~~~l~~~l~~~~~~~~v~~~~~~-~~~-----------~~~~--~~~~d~iii~Gg~~~~~---d~~~~~~~i~~~~~~~   72 (192)
T PF00117_consen   10 THSLVRALRELGIDVEVVRVDSD-FEE-----------PLED--LDDYDGIIISGGPGSPY---DIEGLIELIREARERK   72 (192)
T ss_dssp             HHHHHHHHHHTTEEEEEEETTGG-HHH-----------HHHH--TTTSSEEEEECESSSTT---SHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCeEEEEECCCc-hhh-----------hhhh--hcCCCEEEECCcCCccc---cccccccccccccccc
Confidence            45677888889999999986642 000           0011  24799999999942222   2577888999999999


Q ss_pred             CEEEEEccchHHhhhh
Q 015523          113 RLYGAICAAPAVTLLP  128 (405)
Q Consensus       113 ~~i~aic~g~~~~La~  128 (405)
                      +||.+||-|-. +|+.
T Consensus        73 ~PilGIC~G~Q-~la~   87 (192)
T PF00117_consen   73 IPILGICLGHQ-ILAH   87 (192)
T ss_dssp             SEEEEETHHHH-HHHH
T ss_pred             eEEEEEeehhh-hhHH
Confidence            99999999766 5664

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=95.48  E-value=0.045  Score=47.48  Aligned_cols=75  Identities=17%  Similarity=0.125  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcC
Q 015523           33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK  112 (405)
Q Consensus        33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~  112 (405)
                      ...+.+.|++.|+++.++..+.+                .++.+..+||.||+|||. ..........+   .+...+.+
T Consensus        11 ~~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~-~~~~~~~~~~~---~~~~~~~~   70 (181)
T cd01742          11 THLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGP-SSVYEEDAPRV---DPEIFELG   70 (181)
T ss_pred             HHHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCc-ccccccccchh---hHHHHhcC
Confidence            34567888888988888865432                001122369999999993 22111111233   34445569


Q ss_pred             CEEEEEccchHHhhhh
Q 015523          113 RLYGAICAAPAVTLLP  128 (405)
Q Consensus       113 ~~i~aic~g~~~~La~  128 (405)
                      +|+.+||.|-. +|+.
T Consensus        71 ~PilGIC~G~Q-ll~~   85 (181)
T cd01742          71 VPVLGICYGMQ-LIAK   85 (181)
T ss_pred             CCEEEEcHHHH-HHHH
Confidence            99999999766 5776

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=95.31  E-value=0.047  Score=54.69  Aligned_cols=46  Identities=22%  Similarity=0.115  Sum_probs=30.9

Q ss_pred             cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ++|+||+|||. ....-.-...+.+.|+++   ++||.+||.| .-+|++.
T Consensus        36 ~~D~lILPGG~-~~~~~~l~~~l~~~i~~~---g~pvlGICgG-~QmLg~~   81 (476)
T PRK06278         36 DLDGLIIPGGS-LVESGSLTDELKKEILNF---DGYIIGICSG-FQILSEK   81 (476)
T ss_pred             cCCEEEECCCc-hhhcchHHHHHHHHHHHc---CCeEEEEcHH-HHhcccc
Confidence            69999999983 111100024556666655   9999999996 4478876

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.31  E-value=0.056  Score=47.33  Aligned_cols=84  Identities=13%  Similarity=0.072  Sum_probs=52.8

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc--cc
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RD   97 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~--~~   97 (405)
                      |+|+=|..-+..+   ..+.|++.++++.++...                   +++.  ++|.||+||+-......  ..
T Consensus         2 i~iidyg~gN~~s---~~~al~~~g~~~~~v~~~-------------------~~l~--~~D~lIlPG~g~~~~~~~~L~   57 (192)
T PRK13142          2 IVIVDYGLGNISN---VKRAIEHLGYEVVVSNTS-------------------KIID--QAETIILPGVGHFKDAMSEIK   57 (192)
T ss_pred             EEEEEcCCccHHH---HHHHHHHcCCCEEEEeCH-------------------HHhc--cCCEEEECCCCCHHHHHHHHH
Confidence            6777666555544   466777778777776422                   1232  58999999982111111  11


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  130 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag  130 (405)
                      ...+.+.|++  ..++|+.+||.|-. +|++..
T Consensus        58 ~~gl~~~i~~--~~g~PvlGIClGmQ-lL~~~~   87 (192)
T PRK13142         58 RLNLNAILAK--NTDKKMIGICLGMQ-LMYEHS   87 (192)
T ss_pred             HCCcHHHHHH--hCCCeEEEECHHHH-HHhhhc
Confidence            2246677776  57899999999644 677654

>CHL00101 trpG anthranilate synthase component 2

Probab=95.29  E-value=0.041  Score=48.29  Aligned_cols=86  Identities=9%  Similarity=0.017  Sum_probs=53.1

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  101 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~  101 (405)
                      ||+.|..+... ..+.+.|++.++++.++..+..               .+.+.....+|.||+-||.....   +. .+
T Consensus         2 iliid~~dsft-~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~---~~-~~   61 (190)
T CHL00101          2 ILIIDNYDSFT-YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPR---DS-GI   61 (190)
T ss_pred             EEEEECCCchH-HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChH---HC-cc
Confidence            44444333332 5578888888988887765532               11112112589999999842222   22 23


Q ss_pred             HHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523          102 KKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus       102 ~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ...+.+.++.++||.+||-|-. +|+.
T Consensus        62 ~~~i~~~~~~~~PiLGIClG~Q-lla~   87 (190)
T CHL00101         62 SLDVISSYAPYIPILGVCLGHQ-SIGY   87 (190)
T ss_pred             hHHHHHHhcCCCcEEEEchhHH-HHHH
Confidence            4445556788999999999765 5776

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=95.17  E-value=0.047  Score=48.13  Aligned_cols=87  Identities=11%  Similarity=0.141  Sum_probs=54.7

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  101 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~  101 (405)
                      ||+-|+.+... ..+.+.|++.++++.++..+.. +.           ..+++   .+||.||+-||...+.   +....
T Consensus         2 il~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~-~~-----------~~~~~---~~~d~iIlsgGP~~p~---~~~~~   62 (195)
T PRK07649          2 ILMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV-TI-----------SDIEN---MKPDFLMISPGPCSPN---EAGIS   62 (195)
T ss_pred             EEEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC-CH-----------HHHhh---CCCCEEEECCCCCChH---hCCCc
Confidence            45555544443 4478889999999988875532 11           01122   2589999999943332   22334


Q ss_pred             HHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          102 KKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       102 ~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .+.+++ ++.++|+.+||-|.. +|+.+
T Consensus        63 ~~~i~~-~~~~~PvLGIClG~Q-lla~~   88 (195)
T PRK07649         63 MEVIRY-FAGKIPIFGVCLGHQ-SIAQV   88 (195)
T ss_pred             hHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            555654 467899999999766 57763

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=95.17  E-value=0.08  Score=46.13  Aligned_cols=76  Identities=17%  Similarity=0.133  Sum_probs=49.4

Q ss_pred             HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCC
Q 015523           34 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR  113 (405)
Q Consensus        34 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~  113 (405)
                      ..+.+.|++.|++++++..+.. .            ..+.+.  ..||++|+.||. ...  .++ .....+++...+++
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~-~------------~~~~~~--~~~dgvil~gG~-~~~--~~~-~~~~~i~~~~~~~~   72 (184)
T cd01743          12 YNLVQYLRELGAEVVVVRNDEI-T------------LEELEL--LNPDAIVISPGP-GHP--EDA-GISLEIIRALAGKV   72 (184)
T ss_pred             HHHHHHHHHcCCceEEEeCCCC-C------------HHHHhh--cCCCEEEECCCC-CCc--ccc-hhHHHHHHHHhcCC
Confidence            3466888889999999987653 1            000122  369999997772 221  122 24555666677889


Q ss_pred             EEEEEccchHHhhhhc
Q 015523          114 LYGAICAAPAVTLLPW  129 (405)
Q Consensus       114 ~i~aic~g~~~~La~a  129 (405)
                      ||.+||-|-. +|+.+
T Consensus        73 PvlGIC~G~Q-lla~~   87 (184)
T cd01743          73 PILGVCLGHQ-AIAEA   87 (184)
T ss_pred             CEEEECHhHH-HHHHH
Confidence            9999999755 67764

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK13566 anthranilate synthase; Provisional

Probab=95.16  E-value=0.1  Score=55.13  Aligned_cols=92  Identities=14%  Similarity=0.027  Sum_probs=64.4

Q ss_pred             CCCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      +..++||+|+=+.+   .-...+.+.|+..|+++.++..+...             ..+..   .++|.||+-||...+.
T Consensus       523 ~~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~~-------------~~~~~---~~~DgVVLsgGpgsp~  583 (720)
T PRK13566        523 VGEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFAE-------------EMLDR---VNPDLVVLSPGPGRPS  583 (720)
T ss_pred             CCCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCCh-------------hHhhh---cCCCEEEECCCCCChh
Confidence            44667887776553   44667789999999999999876430             01111   2589999976632222


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                          +..+.++++++.++++||.+||-|-. +|+.+
T Consensus       584 ----d~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a  614 (720)
T PRK13566        584 ----DFDCKATIDAALARNLPIFGVCLGLQ-AIVEA  614 (720)
T ss_pred             ----hCCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence                23577899999999999999999766 57654

>PRK06186 hypothetical protein; Validated

Probab=95.12  E-value=0.13  Score=46.21  Aligned_cols=75  Identities=15%  Similarity=0.041  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhCC----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHH
Q 015523          235 EIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKE  310 (405)
Q Consensus       235 e~~~~~~~l~~~~----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~  310 (405)
                      ....+.+.|..++    .++++...+.. .+..        +   +.  ..++|.++||||.+.    +.-+--+..++.
T Consensus        16 aY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~--------~---~~--l~~~dgilvpgGfg~----rg~~Gki~ai~~   77 (229)
T PRK06186         16 AHQAIPLALDLAAAVLGLPVDYEWLPTP-EITD--------P---ED--LAGFDGIWCVPGSPY----RNDDGALTAIRF   77 (229)
T ss_pred             HHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCC--------h---hh--HhhCCeeEeCCCCCc----ccHhHHHHHHHH
Confidence            3455677777664    56666655553 2211        1   12  367899999999742    345567778899


Q ss_pred             HhhcCCEEEEEchHHHH
Q 015523          311 QKVAGRIYGAVCSSPIV  327 (405)
Q Consensus       311 ~~~~~k~i~aic~g~~~  327 (405)
                      +..++.|+.+||-|..+
T Consensus        78 Are~~iP~LGIClGmQ~   94 (229)
T PRK06186         78 ARENGIPFLGTCGGFQH   94 (229)
T ss_pred             HHHcCCCeEeechhhHH
Confidence            99999999999999984

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=95.05  E-value=0.1  Score=55.01  Aligned_cols=92  Identities=13%  Similarity=0.046  Sum_probs=62.7

Q ss_pred             CCCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      +..++||+|+=+.   +.....+.+.|++.|+++.++......             ..++   ..+||.|||-||.....
T Consensus       513 ~~~~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~~-------------~~~~---~~~~DgLILsgGPGsp~  573 (717)
T TIGR01815       513 GGEGRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHAE-------------AAFD---ERRPDLVVLSPGPGRPA  573 (717)
T ss_pred             CCCCCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCCh-------------hhhh---hcCCCEEEEcCCCCCch
Confidence            3456788888544   344667889999999999888644210             0011   12589999966622222


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                          +....+++++.++.++||.+||-|.. +|+.+
T Consensus       574 ----d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a  604 (717)
T TIGR01815       574 ----DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA  604 (717)
T ss_pred             ----hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence                23557789999999999999999766 67764

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=95.02  E-value=0.11  Score=50.26  Aligned_cols=87  Identities=17%  Similarity=0.110  Sum_probs=58.6

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      ++||+++=+ |+.    ..+++.|.+.|+++.++..+..                ++++...++|.|+++||..++.   
T Consensus       177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~~----------------~~~i~~~~~DGIvLSgGPgdp~---  232 (360)
T PRK12564        177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATTT----------------AEEILALNPDGVFLSNGPGDPA---  232 (360)
T ss_pred             CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCCC----------------HHHHHhcCCCEEEEeCCCCChH---
Confidence            356666644 322    3577888888999988865431                1111112589999999932232   


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      +.+...++++++.++++||.+||-|-. +|+.
T Consensus       233 ~~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~  263 (360)
T PRK12564        233 ALDYAIEMIRELLEKKIPIFGICLGHQ-LLAL  263 (360)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEECHHHH-HHHH
Confidence            236677899999988999999999866 4554

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=94.85  E-value=0.14  Score=46.34  Aligned_cols=94  Identities=14%  Similarity=0.016  Sum_probs=61.6

Q ss_pred             CCcEEEEEecCCCc--hhh-HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523           16 FALNVLVPVGFGTE--EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS   92 (405)
Q Consensus        16 ~~~ki~ill~~g~~--~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~   92 (405)
                      +.+||+++-+-...  ..+ +....+.|++.|+++..+-....               ..+.+  ...|+|+++||-  .
T Consensus        30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d---------------~~~~l--~~ad~I~v~GGn--t   90 (233)
T PRK05282         30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVAD---------------PVAAI--ENAEAIFVGGGN--T   90 (233)
T ss_pred             CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchh---------------hHHHH--hcCCEEEECCcc--H
Confidence            45789999876532  222 34567788888988776632210               11122  268999999993  3


Q ss_pred             hc---cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           93 VR---LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        93 ~~---~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ..   ......+.+.|++++++|+++++.|.| +.+++..
T Consensus        91 ~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAG-Aii~~~~  129 (233)
T PRK05282         91 FQLLKQLYERGLLAPIREAVKNGTPYIGWSAG-ANVAGPT  129 (233)
T ss_pred             HHHHHHHHHCCcHHHHHHHHHCCCEEEEECHH-HHhhhcc
Confidence            22   223456788899999999999999995 5455543

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=94.78  E-value=0.13  Score=49.99  Aligned_cols=87  Identities=18%  Similarity=0.111  Sum_probs=57.6

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      ++||+++=+ |+.    ..+.+.|++.|+++.++..+..                .+++...++|.|+++||...+.   
T Consensus       192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~dgIilSgGPg~p~---  247 (382)
T CHL00197        192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATSP----------------YQDILSYQPDGILLSNGPGDPS---  247 (382)
T ss_pred             CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCCC----------------HHHHhccCCCEEEEcCCCCChh---
Confidence            467777655 444    3478888888999988843321                1122222589999999842222   


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ......+.++++.+.+.||.+||-|-. +|+.
T Consensus       248 ~~~~~i~~i~~~~~~~~PilGIClGhQ-lLa~  278 (382)
T CHL00197        248 AIHYGIKTVKKLLKYNIPIFGICMGHQ-ILSL  278 (382)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcHHHH-HHHH
Confidence            234566777877777899999999766 4654

>PRK00758 GMP synthase subunit A; Validated

Probab=94.77  E-value=0.074  Score=46.35  Aligned_cols=68  Identities=19%  Similarity=0.222  Sum_probs=44.3

Q ss_pred             HHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcc-cEEEEcCCchhhhccccChHHHHHHHHHHHcCCE
Q 015523           36 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVF-DLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL  114 (405)
Q Consensus        36 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~-d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~  114 (405)
                      +.+.|++.|+++.++..+..                .+++.  .+ |.+++||| +...   ....+.++++   +.++|
T Consensus        15 i~~~l~~~g~~~~~~~~~~~----------------~~~l~--~~~dgivi~Gg-~~~~---~~~~~~~~l~---~~~~P   69 (184)
T PRK00758         15 IHRTLRYLGVDAKIIPNTTP----------------VEEIK--AFEDGLILSGG-PDIE---RAGNCPEYLK---ELDVP   69 (184)
T ss_pred             HHHHHHHcCCcEEEEECCCC----------------HHHHh--hcCCEEEECCC-CChh---hccccHHHHH---hCCCC
Confidence            46777888888776653321                12222  45 99999999 3222   2234556665   35899


Q ss_pred             EEEEccchHHhhhhc
Q 015523          115 YGAICAAPAVTLLPW  129 (405)
Q Consensus       115 i~aic~g~~~~La~a  129 (405)
                      |.+||.|-. +|+.+
T Consensus        70 ilGIC~G~Q-~L~~a   83 (184)
T PRK00758         70 ILGICLGHQ-LIAKA   83 (184)
T ss_pred             EEEEeHHHH-HHHHh
Confidence            999999765 67765

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=94.69  E-value=0.044  Score=48.01  Aligned_cols=79  Identities=18%  Similarity=0.160  Sum_probs=50.1

Q ss_pred             HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCccc-CCCCCCcccEEEEcCCchhhhc--------------cccC
Q 015523           34 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSI-SNCSHQVFDLIALPGGMPGSVR--------------LRDC   98 (405)
Q Consensus        34 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~-~~~~~~~~d~liipgg~~~~~~--------------~~~~   98 (405)
                      ....+.|+..|+.+.++..... .            ..+ ...  ..+|.||+|||......              ...+
T Consensus        22 ~~~~~~l~~~G~~~~iv~~~~~-~------------~~~~~~l--~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~   86 (189)
T cd01745          22 QYYVDAVRKAGGLPVLLPPVDD-E------------EDLEQYL--ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERD   86 (189)
T ss_pred             HHHHHHHHHCCCEEEEeCCCCC-h------------HHHHHHH--hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHH
Confidence            3466777888888877764432 0            001 111  25899999999421111              1112


Q ss_pred             hHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           99 EILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        99 ~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ....++++++.+.++||.++|.|.. +|+.
T Consensus        87 ~~~~~~~~~~~~~~~PilgiC~G~Q-~l~~  115 (189)
T cd01745          87 AFELALLRAALERGKPILGICRGMQ-LLNV  115 (189)
T ss_pred             HHHHHHHHHHHHCCCCEEEEcchHH-HHHH
Confidence            2447889999999999999999766 4554

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=94.63  E-value=0.093  Score=46.78  Aligned_cols=84  Identities=13%  Similarity=0.040  Sum_probs=54.6

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch---hhhccc
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP---GSVRLR   96 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~---~~~~~~   96 (405)
                      |+|+=|-.-   .+......++..++++.+++...                   ++.  ++|.||+||+-.   ....++
T Consensus         2 i~iidyg~g---Nl~s~~~al~~~~~~~~~~~~~~-------------------~l~--~~d~iIlPG~g~~~~~~~~l~   57 (210)
T PRK14004          2 IAILDYGMG---NIHSCLKAVSLYTKDFVFTSDPE-------------------TIE--NSKALILPGDGHFDKAMENLN   57 (210)
T ss_pred             EEEEECCCc---hHHHHHHHHHHcCCeEEEECCHH-------------------Hhc--cCCEEEECCCCchHHHHHHHH
Confidence            555544433   44555666677777666653222                   232  589999999831   112232


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                       ...+.+.|+++.++++||.++|.|-. +|++.
T Consensus        58 -~~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~   88 (210)
T PRK14004         58 -STGLRSTIDKHVESGKPLFGICIGFQ-ILFES   88 (210)
T ss_pred             -HcCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence             23688899999999999999999755 68764

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=94.62  E-value=0.11  Score=45.90  Aligned_cols=75  Identities=16%  Similarity=0.086  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc--ccChHHHHHHHHH-H
Q 015523           33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RDCEILKKITSKQ-A  109 (405)
Q Consensus        33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~--~~~~~~~~~l~~~-~  109 (405)
                      +..+.+.|++.++++.++....                   ++.  .+|.||+||+.......  ...-.+...|+++ +
T Consensus        12 ~~~v~~~l~~~g~~~~~~~~~~-------------------~l~--~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~   70 (201)
T PRK13152         12 LNSVAKAFEKIGAINFIAKNPK-------------------DLQ--KADKLLLPGVGSFKEAMKNLKELGFIEALKEQVL   70 (201)
T ss_pred             HHHHHHHHHHCCCeEEEECCHH-------------------HHc--CCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHH
Confidence            3445677777777776653211                   222  48999999973211111  1111234555554 5


Q ss_pred             HcCCEEEEEccchHHhhhhc
Q 015523          110 EEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       110 ~~~~~i~aic~g~~~~La~a  129 (405)
                      ++++||.+||.|-. +|+..
T Consensus        71 ~~~~pvlGiC~G~Q-~l~~~   89 (201)
T PRK13152         71 VQKKPILGICLGMQ-LFLER   89 (201)
T ss_pred             hCCCcEEEECHhHH-HHhhc
Confidence            78999999999755 78876

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=94.36  E-value=0.54  Score=46.41  Aligned_cols=223  Identities=12%  Similarity=0.086  Sum_probs=120.8

Q ss_pred             ccEEEEc-CCchhhhccccChHHHHHHHHHHHc---CCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Ccc--
Q 015523           80 FDLIALP-GGMPGSVRLRDCEILKKITSKQAEE---KRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWA--  152 (405)
Q Consensus        80 ~d~liip-gg~~~~~~~~~~~~~~~~l~~~~~~---~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~--  152 (405)
                      +|++++= ||.  .. -.+.-++++.+|++...   ...+..-|+ ...+|+.+|=++.|. |=|-  ...|+. ...  
T Consensus       133 ~DvvivEIGGT--VG-DIEslpFlEAiRQ~~~e~g~~n~~fiH~t-lvpyi~~~gE~KTKP-TQhS--VkeLR~iGI~PD  205 (533)
T COG0504         133 ADVVIVEIGGT--VG-DIESLPFLEAIRQLRLELGRENVLFIHVT-LVPYIAAAGELKTKP-TQHS--VKELRSIGIQPD  205 (533)
T ss_pred             CCEEEEEeCCc--ee-cccccHHHHHHHHHHhhhCcccEEEEEEe-cceeecccCccCCCC-chHH--HHHHHhcCCCcc
Confidence            7888884 663  22 12455777777776532   334555566 455688888777654 2221  112222 000  


Q ss_pred             -----ccCc-------------EEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccc-cccCcccccccccc
Q 015523          153 -----VKSN-------------IHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH-NADNSLKKEEFNEV  213 (405)
Q Consensus       153 -----~~~~-------------~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~-~~~~~~~~~~~~~~  213 (405)
                           .+++             -|....+|++-...+.++.=+.+-    .+.+...+.+.|.++ ..++-+.|+.+-..
T Consensus       206 iii~Rs~~~l~~~~~~KIAlfc~V~~~~Vi~~~Dv~siY~vPl~l~----~qgl~~~i~~~l~l~~~~~dl~~W~~~v~~  281 (533)
T COG0504         206 ILICRSERPLPEEERRKIALFCNVPEEAVISAPDVESIYEVPLLLE----KQGLDDYILERLNLNAPEPDLSEWKDLVDK  281 (533)
T ss_pred             eEEEecCCCCCHHHHHHHHHhcCCCHHHeEecccHHHHHHhHHHHH----HcchHHHHHHHhCCCCCCcchHHHHHHHHH
Confidence                 0000             122245677666665555544444    455566777888885 34342223322221


Q ss_pred             ccccCCcCEEEEEeCCCCcHHHHHHHHHHHHhCC----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEc
Q 015523          214 EWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILP  289 (405)
Q Consensus       214 ~~~~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livp  289 (405)
                      .....+.-+|+++-==--..-.+.++.+.|..++    .++++...+.. .+....      ...+..    .+|.++||
T Consensus       282 i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse-~le~~~------~~~~~~----~~dgIlVP  350 (533)
T COG0504         282 IKNPKKEVTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSE-DLEEEN------AAELEK----LVDGILVP  350 (533)
T ss_pred             hcCCCCceEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccc-cccccc------hhhhhh----cCCEEEeC
Confidence            1111222456665311113334567888888886    45555555543 111110      001111    28999999


Q ss_pred             CCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523          290 GGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL  328 (405)
Q Consensus       290 gG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~L  328 (405)
                      ||++.    +.-+--+..++.+..++.|..+||-|..+.
T Consensus       351 GGFG~----RG~eGkI~Ai~yAREn~iP~lGIClGmQ~a  385 (533)
T COG0504         351 GGFGY----RGVEGKIAAIRYARENNIPFLGICLGMQLA  385 (533)
T ss_pred             CCCCc----CchHHHHHHHHHHHhcCCCEEEEchhHHHH
Confidence            99842    344556677788889999999999999865

>PRK05637 anthranilate synthase component II; Provisional

Probab=94.34  E-value=0.16  Score=45.22  Aligned_cols=75  Identities=20%  Similarity=0.167  Sum_probs=47.8

Q ss_pred             HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCC
Q 015523           34 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR  113 (405)
Q Consensus        34 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~  113 (405)
                      ..+.+.|++.+++++++..+..                ++++....||.||+-||...+.   +.....++++.+ ..++
T Consensus        15 ~nl~~~l~~~g~~~~v~~~~~~----------------~~~l~~~~~~~iIlsgGPg~~~---d~~~~~~li~~~-~~~~   74 (208)
T PRK05637         15 YNLVDAFAVAGYKCTVFRNTVP----------------VEEILAANPDLICLSPGPGHPR---DAGNMMALIDRT-LGQI   74 (208)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCC----------------HHHHHhcCCCEEEEeCCCCCHH---HhhHHHHHHHHH-hCCC
Confidence            3468888888999998876431                1111112589999988732222   222345566543 3579


Q ss_pred             EEEEEccchHHhhhhc
Q 015523          114 LYGAICAAPAVTLLPW  129 (405)
Q Consensus       114 ~i~aic~g~~~~La~a  129 (405)
                      ||.+||-|.. +|+.+
T Consensus        75 PiLGIClG~Q-lla~a   89 (208)
T PRK05637         75 PLLGICLGFQ-ALLEH   89 (208)
T ss_pred             CEEEEcHHHH-HHHHH
Confidence            9999999766 67764

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=94.34  E-value=0.065  Score=49.32  Aligned_cols=51  Identities=18%  Similarity=0.134  Sum_probs=39.1

Q ss_pred             CCccEEEEcCCccchH-------------hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          281 SVYDLIILPGGVAGAE-------------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       281 ~~~D~livpgG~~~~~-------------~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +.+|.++++||..+..             ....+...+++++.+.++++||.+||-|..+|+.+
T Consensus        60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva  123 (254)
T PRK11366         60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA  123 (254)
T ss_pred             HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            4589999999842221             11223467899999999999999999999999766

>PLN02347 GMP synthetase

Probab=94.24  E-value=0.15  Score=52.08  Aligned_cols=91  Identities=16%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      .+|+|+=|-.-.   ...+...+++.|+.++++..+.                .++++...++|+||+|||...... ..
T Consensus        11 ~~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~----------------~~~~i~~~~~dgIILsGGP~sv~~-~~   70 (536)
T PLN02347         11 DVVLILDYGSQY---THLITRRVRELGVYSLLLSGTA----------------SLDRIASLNPRVVILSGGPHSVHV-EG   70 (536)
T ss_pred             CEEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhcCCCCEEEECCCCCcccc-cC
Confidence            356666443222   2345777888888877775442                233332236899999999643221 12


Q ss_pred             ChHHH-HHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILK-KLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~-~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+.+. .+++.....+.||.+||-|..+|+.+
T Consensus        71 ~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a  102 (536)
T PLN02347         71 APTVPEGFFDYCRERGVPVLGICYGMQLIVQK  102 (536)
T ss_pred             CchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence            22222 23333445789999999999999886

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=94.10  E-value=0.18  Score=49.27  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=55.0

Q ss_pred             HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523          237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR  316 (405)
Q Consensus       237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k  316 (405)
                      ..++..|.+.|+.+.++..+.                .++++...++|.||+-||.+++..   .+..++.++++. .++
T Consensus       252 ~nIlr~L~~~G~~v~VvP~~~----------------~~~ei~~~~pDGIiLSnGPGDP~~---~~~~ie~ik~l~-~~i  311 (415)
T PLN02771        252 HNILRRLASYGCKITVVPSTW----------------PASEALKMKPDGVLFSNGPGDPSA---VPYAVETVKELL-GKV  311 (415)
T ss_pred             HHHHHHHHHcCCeEEEECCCC----------------CHHHHhhcCCCEEEEcCCCCChhH---hhHHHHHHHHHH-hCC
Confidence            667888889999998885443                123332346899999999655433   355677777765 478


Q ss_pred             EEEEEchHHHHHHHc
Q 015523          317 IYGAVCSSPIVLHKH  331 (405)
Q Consensus       317 ~i~aic~g~~~La~a  331 (405)
                      ||.+||-|-.+|+.+
T Consensus       312 PIlGICLGhQlLa~A  326 (415)
T PLN02771        312 PVFGICMGHQLLGQA  326 (415)
T ss_pred             CEEEEcHHHHHHHHh
Confidence            999999999999986

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=94.09  E-value=0.12  Score=48.12  Aligned_cols=79  Identities=22%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hhcChHHHHHHHHHhhc
Q 015523          238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQKVA  314 (405)
Q Consensus       238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~~~~~l~~~l~~~~~~  314 (405)
                      .-++.+.++|..|..+-.+..             ...+++. ...+|.|++|||..+...   ......++++..+..++
T Consensus        24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~   89 (273)
T cd01747          24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA   89 (273)
T ss_pred             HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence            356777788888776644321             1223331 256899999999533321   11123344444444444


Q ss_pred             C--CEEEEEchHHHHHHH
Q 015523          315 G--RIYGAVCSSPIVLHK  330 (405)
Q Consensus       315 ~--k~i~aic~g~~~La~  330 (405)
                      |  .||.++|-|..+|+.
T Consensus        90 g~~~Pv~GiClG~QlL~~  107 (273)
T cd01747          90 GDYFPVWGTCLGFELLTY  107 (273)
T ss_pred             CCCCcEEEEcHHHHHHHH
Confidence            4  799999999998876

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=94.08  E-value=0.11  Score=47.30  Aligned_cols=45  Identities=16%  Similarity=0.137  Sum_probs=36.5

Q ss_pred             CCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523          281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH  329 (405)
Q Consensus       281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La  329 (405)
                      ..+|.|++|||.. ..   .....+..+++....++|+.+||.|..+|+
T Consensus        54 ~~~dgivl~GG~~-~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~l~   98 (235)
T cd01746          54 KGADGILVPGGFG-IR---GVEGKILAIKYARENNIPFLGICLGMQLAV   98 (235)
T ss_pred             ccCCEEEECCCCC-Cc---chhhHHHHHHHHHHCCceEEEEEhHHHHHH
Confidence            6799999999963 22   234567788888999999999999998775

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=94.05  E-value=0.21  Score=46.89  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=63.6

Q ss_pred             CcCEEEEEeCC-CCcHHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEe-eCCCccCcCCCCccEEEEcCCccc
Q 015523          219 RMPRVLIPIAN-GSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKII-ADKSISDAAESVYDLIILPGGVAG  294 (405)
Q Consensus       219 ~~~~V~il~~~-g~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~-~~~~l~~~~~~~~D~livpgG~~~  294 (405)
                      ++.||+||-.- .-...| ..+...|....  ++++++.+..- ..+....-.+. -=.+++++....||++||.|+...
T Consensus        34 rpl~i~ilNlMp~k~~TE-~q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e  111 (302)
T PRK05368         34 RPLKILILNLMPKKIETE-TQFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVE  111 (302)
T ss_pred             CCccEEEEeCCCCCchHH-HHHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCC
Confidence            46899999653 344566 44566665544  45666655542 11111111111 112556665688999999998633


Q ss_pred             hHhhhcC---hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          295 AERLQKS---RILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       295 ~~~~~~~---~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .-...+.   .++.++++...++++++.+||=|..+++.+
T Consensus       112 ~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a  151 (302)
T PRK05368        112 QLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH  151 (302)
T ss_pred             CccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            1111111   135555555556789999999999987743

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=94.05  E-value=0.25  Score=50.44  Aligned_cols=92  Identities=15%  Similarity=0.143  Sum_probs=57.7

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      +||.|+  |..+..- ..+.+.|++.|+++.++..+-  +          .+..++++...++|.||+-||.+.+.....
T Consensus         2 ~~iLiI--Dn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~   66 (531)
T PRK09522          2 ADILLL--DNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAGC   66 (531)
T ss_pred             CeEEEE--eCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCCC
Confidence            454444  5444433 457888899999998887542  1          112334432245789999888755543322


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ...+   ++ ....++||.+||-|..+|+.+
T Consensus        67 ~~~i---~~-~~~~~iPILGIClG~QlLa~a   93 (531)
T PRK09522         67 MPEL---LT-RLRGKLPIIGICLGHQAIVEA   93 (531)
T ss_pred             CHHH---HH-HHhcCCCEEEEcHHHHHHHHh
Confidence            2233   22 235689999999999999876

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=93.87  E-value=0.17  Score=48.76  Aligned_cols=85  Identities=22%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD   97 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~   97 (405)
                      +||+++=+ |+.    ..+.+.|.+.|+++.++..+..                ++++....+|.|+++||...+.   .
T Consensus       174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~pDGIiLSgGPgdp~---~  229 (358)
T TIGR01368       174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDTD----------------AEEIKKYNPDGIFLSNGPGDPA---A  229 (358)
T ss_pred             cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCCC----------------HHHHHhhCCCEEEECCCCCCHH---H
Confidence            46666643 333    3578888888999988753321                1122112469999999932222   3


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+...++++++.+ ++||.+||-|-. +|+.
T Consensus       230 ~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~  258 (358)
T TIGR01368       230 VEPAIETIRKLLE-KIPIFGICLGHQ-LLAL  258 (358)
T ss_pred             HHHHHHHHHHHHc-CCCEEEECHHHH-HHHH
Confidence            4567788888887 899999999866 5664

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=93.80  E-value=0.34  Score=43.18  Aligned_cols=99  Identities=18%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             CcCEEEEEeCCCCcHHH-HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          219 RMPRVLIPIANGSEEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      ...||+++-.......+ .....+.|.+.|+++..+-...  .        -..+...+.+  ...|+|+++||.  +..
T Consensus        28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~--~--------~~~~~~~~~l--~~ad~I~~~GG~--~~~   93 (210)
T cd03129          28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID--T--------ANDPDVVARL--LEADGIFVGGGN--QLR   93 (210)
T ss_pred             CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC--C--------CCCHHHHHHH--hhCCEEEEcCCc--HHH
Confidence            35788888776544333 4456778888887766553321  0        0001112223  678999999995  433


Q ss_pred             h---hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 L---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 ~---~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +   .....+.+.|++.+++|.++++.|+|+.++...
T Consensus        94 ~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129          94 LLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             HHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence            2   233446666666777999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=93.72  E-value=0.21  Score=48.09  Aligned_cols=86  Identities=16%  Similarity=0.123  Sum_probs=56.2

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      .+||.++=+ |+    -..+.+.|++.|+.+.++..+..                .+++....+|.|+++||..++   .
T Consensus       167 ~~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~DGIiLsgGPgdp---~  222 (354)
T PRK12838        167 GKHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDTS----------------LEEIKNLNPDGIVLSNGPGDP---K  222 (354)
T ss_pred             CCEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEEcCCCCCh---H
Confidence            456666543 32    35567788888999988864431                111111258999999994222   2


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      +.....++++++.++ +||.+||-|-. +|+.
T Consensus       223 ~~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~  252 (354)
T PRK12838        223 ELQPYLPEIKKLISS-YPILGICLGHQ-LIAL  252 (354)
T ss_pred             HhHHHHHHHHHHhcC-CCEEEECHHHH-HHHH
Confidence            344667788888876 99999999766 5664

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.40  E-value=0.04  Score=46.57  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hhcChHHHHHHHHHhhc
Q 015523          238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQKVA  314 (405)
Q Consensus       238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~~~~~l~~~l~~~~~~  314 (405)
                      ...+.|++.|++++.+..... .          .....+.+  .+.|+|++-||.  +..   ..++..+.+.|++.+++
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~-~----------~~~~~~~i--~~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~   68 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDR-N----------DADILEAI--READAIFLGGGD--TFRLLRQLKETGLDEAIREAYRK   68 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSC-G----------HHHHHHHH--HHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCEEEEEeccCC-C----------hHHHHHHH--HhCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHC
Confidence            467888889988777766552 0          01122333  568999999995  433   34566799999999999


Q ss_pred             CCEEEEEchHHHHHHHcC
Q 015523          315 GRIYGAVCSSPIVLHKHG  332 (405)
Q Consensus       315 ~k~i~aic~g~~~La~aG  332 (405)
                      |+++++..+|+.++...+
T Consensus        69 G~vi~G~SAGA~i~~~~~   86 (154)
T PF03575_consen   69 GGVIIGTSAGAMILGPSI   86 (154)
T ss_dssp             TSEEEEETHHHHCTSSBS
T ss_pred             CCEEEEEChHHhhccCce
Confidence            999999999999875543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=93.24  E-value=0.26  Score=43.29  Aligned_cols=50  Identities=26%  Similarity=0.364  Sum_probs=38.2

Q ss_pred             CCccEEEEcCCccchHhhh-cC-hHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          281 SVYDLIILPGGVAGAERLQ-KS-RILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       281 ~~~D~livpgG~~~~~~~~-~~-~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      .++|++++.||..-...+. ++ ..-.+-|+.....|+|+.+||.|..+|.+
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~  102 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ  102 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence            5799999998863333332 23 45566788888999999999999999974

>PRK00074 guaA GMP synthase; Reviewed

Probab=93.20  E-value=0.3  Score=49.75  Aligned_cols=89  Identities=19%  Similarity=0.110  Sum_probs=56.6

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      +.+|+||=| |..-.  -.+...+++.|...+++..+..                .++++..++|++|+|||...... .
T Consensus         3 ~~~i~vlD~-Gsq~~--~li~r~lrelg~~~~v~p~~~~----------------~~~l~~~~~dgIIlsGGp~sv~~-~   62 (511)
T PRK00074          3 HDKILILDF-GSQYT--QLIARRVRELGVYSEIVPYDIS----------------AEEIRAFNPKGIILSGGPASVYE-E   62 (511)
T ss_pred             CCEEEEEEC-CCCcH--HHHHHHHHHCCCeEEEEECCCC----------------HHHHhccCCCEEEECCCCccccc-C
Confidence            456777766 33332  2456788888988887754431                22332235799999999643322 1


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..+.+   .+...+.++||.+||-|..+|+.+
T Consensus        63 ~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~   91 (511)
T PRK00074         63 GAPRA---DPEIFELGVPVLGICYGMQLMAHQ   91 (511)
T ss_pred             CCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence            12222   244566899999999999999875

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=93.13  E-value=0.82  Score=40.98  Aligned_cols=99  Identities=20%  Similarity=0.264  Sum_probs=65.6

Q ss_pred             cCEEEEEeCCCCcHHHH-HHHHHHHHhCCC-eEEEEeecCCceeecCCCcEEeeCCC-ccCcCCCCccEEEEcCCccchH
Q 015523          220 MPRVLIPIANGSEEIEI-VTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKS-ISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~-~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~-l~~~~~~~~D~livpgG~~~~~  296 (405)
                      ..||+++-+-+....+. -.....|.+.|+ +++++..+.. .  .      ..+.. .+.+  .+.|+|++.||.  +.
T Consensus        29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--~------a~~~~~~~~l--~~ad~I~~~GG~--~~   95 (217)
T cd03145          29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--A------ANDPEVVARL--RDADGIFFTGGD--QL   95 (217)
T ss_pred             CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--H------cCCHHHHHHH--HhCCEEEEeCCc--HH
Confidence            47888887766544443 335567777786 3565544331 1  0      00111 1223  678999999995  43


Q ss_pred             h---hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          297 R---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       297 ~---~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .   ......+.+.|++.+++|.++++..+|+.++...
T Consensus        96 ~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145          96 RITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence            3   3456678899999999999999999999998754

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=93.08  E-value=0.57  Score=40.56  Aligned_cols=83  Identities=16%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHH
Q 015523          229 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLL  308 (405)
Q Consensus       229 ~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l  308 (405)
                      |+++..- ..+++.|...|.++.++-.+.-               +.+.++..++|+|++--|.+.+.   +.....+.|
T Consensus         8 DNyDSFt-yNLv~yl~~lg~~v~V~rnd~~---------------~~~~~~~~~pd~iviSPGPG~P~---d~G~~~~~i   68 (191)
T COG0512           8 DNYDSFT-YNLVQYLRELGAEVTVVRNDDI---------------SLELIEALKPDAIVISPGPGTPK---DAGISLELI   68 (191)
T ss_pred             ECccchH-HHHHHHHHHcCCceEEEECCcc---------------CHHHHhhcCCCEEEEcCCCCChH---HcchHHHHH
Confidence            5444333 5577888888877777655421               12233335689999866653333   566788899


Q ss_pred             HHHhhcCCEEEEEchHHHHHHHc
Q 015523          309 KEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       309 ~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +++ ....||.++|-|-..|+.+
T Consensus        69 ~~~-~~~~PiLGVCLGHQai~~~   90 (191)
T COG0512          69 RRF-AGRIPILGVCLGHQAIAEA   90 (191)
T ss_pred             HHh-cCCCCEEEECccHHHHHHH
Confidence            988 6678999999999998765

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=92.93  E-value=0.35  Score=49.54  Aligned_cols=87  Identities=11%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhCCCe-EEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChH
Q 015523          225 IPIANGSEEIEIVTIVDILRRAKVD-VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRI  303 (405)
Q Consensus       225 il~~~g~~~~e~~~~~~~l~~~~~~-v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~  303 (405)
                      |++.|..+..- ..+.+.|++.+.. +.++-++.-               .++++....+|+||+.||...+.+   +..
T Consensus         2 il~idn~dsft-~nl~~~l~~~g~~~v~~~~~~~~---------------~~~~~~~~~~d~vIlsgGP~~p~~---~~~   62 (534)
T PRK14607          2 IILIDNYDSFT-YNIYQYIGELGPEEIEVVRNDEI---------------TIEEIEALNPSHIVISPGPGRPEE---AGI   62 (534)
T ss_pred             EEEEECchhHH-HHHHHHHHHcCCCeEEEECCCCC---------------CHHHHHhcCCCEEEECCCCCChhh---CCc
Confidence            44555555444 3477888888875 665544432               123333346899999999755443   233


Q ss_pred             HHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          304 LKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       304 l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..++++. ...+.||.+||-|..+|+.+
T Consensus        63 ~~~li~~-~~~~~PvLGIClG~QlLa~a   89 (534)
T PRK14607         63 SVEVIRH-FSGKVPILGVCLGHQAIGYA   89 (534)
T ss_pred             cHHHHHH-hhcCCCEEEEcHHHHHHHHH
Confidence            4566765 46789999999999999876

>PRK06186 hypothetical protein; Validated

Probab=92.74  E-value=0.73  Score=41.44  Aligned_cols=87  Identities=17%  Similarity=0.069  Sum_probs=54.2

Q ss_pred             cEEEEEecCCCc-hhhHHHHHHHHHhc----CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523           18 LNVLVPVGFGTE-EMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS   92 (405)
Q Consensus        18 ~ki~ill~~g~~-~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~   92 (405)
                      .+|+++- .-.. ...+..+.+.|+-+    +.++++...+.. .+...        .   .+  .++|.++||||++  
T Consensus         2 v~IalVG-KY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~~--------~---~l--~~~dgilvpgGfg--   64 (229)
T PRK06186          2 LRIALVG-DYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTP-EITDP--------E---DL--AGFDGIWCVPGSP--   64 (229)
T ss_pred             cEEEEEE-CCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCCh--------h---hH--hhCCeeEeCCCCC--
Confidence            3666553 2122 23445556666544    566666655543 22211        1   12  3689999999952  


Q ss_pred             hccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523           93 VRLRDCEILKKITSKQAEEKRLYGAICAAPA  123 (405)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~  123 (405)
                        .+.-+.-+..++.+.+++.|+.+||-|-.
T Consensus        65 --~rg~~Gki~ai~~Are~~iP~LGIClGmQ   93 (229)
T PRK06186         65 --YRNDDGALTAIRFARENGIPFLGTCGGFQ   93 (229)
T ss_pred             --cccHhHHHHHHHHHHHcCCCeEeechhhH
Confidence              23456677789999999999999999744

>PRK05380 pyrG CTP synthetase; Validated

Probab=92.62  E-value=0.74  Score=46.50  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             CCcEEEEEe-cCCCchhhHHHHHHHHHhc----CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch
Q 015523           16 FALNVLVPV-GFGTEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP   90 (405)
Q Consensus        16 ~~~ki~ill-~~g~~~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~   90 (405)
                      ...+||++- |-... ..+..+.+.|+.+    +.++++...+.. .+...        ...+.+  ..+|.+++|||+.
T Consensus       287 ~~v~IalVGKY~~l~-DaY~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~~--------~~~~~L--~~~DGIIlpGGfG  354 (533)
T PRK05380        287 GEVTIALVGKYVELP-DAYKSVIEALKHAGIANDVKVNIKWIDSE-DLEEE--------NVAELL--KGVDGILVPGGFG  354 (533)
T ss_pred             CceEEEEEeCccCCc-HHHHHHHHHHHHHHHHcCCeeEEEEEChh-hccCc--------chhhHh--hcCCEEEecCCCC
Confidence            446777764 22222 2355666777655    455666655543 22211        011222  3689999999952


Q ss_pred             hhhccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523           91 GSVRLRDCEILKKITSKQAEEKRLYGAICAAPA  123 (405)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~  123 (405)
                       ..   ..+....+++.+.++++|+.+||-|-.
T Consensus       355 -~~---~~~g~i~~i~~a~e~~iPiLGIClGmQ  383 (533)
T PRK05380        355 -ER---GIEGKILAIRYARENNIPFLGICLGMQ  383 (533)
T ss_pred             -cc---ccccHHHHHHHHHHCCCcEEEEchHHH
Confidence             32   234567788989999999999999754

>PLN02347 GMP synthetase

Probab=92.13  E-value=0.45  Score=48.57  Aligned_cols=90  Identities=17%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccC
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC   98 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~   98 (405)
                      ||+|+=+-.   .-...+...+++.|+.+.++..+..                .+++...++|.||+||| +......+.
T Consensus        12 ~IlIID~G~---~~t~~I~r~lrelgv~~~v~p~~~~----------------~~~i~~~~~dgIILsGG-P~sv~~~~~   71 (536)
T PLN02347         12 VVLILDYGS---QYTHLITRRVRELGVYSLLLSGTAS----------------LDRIASLNPRVVILSGG-PHSVHVEGA   71 (536)
T ss_pred             EEEEEECCC---cHHHHHHHHHHHCCCeEEEEECCCC----------------HHHHhcCCCCEEEECCC-CCcccccCC
Confidence            566664332   2234557788888988888754431                11222125899999999 333222222


Q ss_pred             hHHH-HHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           99 EILK-KITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        99 ~~~~-~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      +.+. .+++...+.+.||.+||-|-. +|+.+
T Consensus        72 p~~~~~i~~~~~~~~iPILGIClG~Q-lLa~a  102 (536)
T PLN02347         72 PTVPEGFFDYCRERGVPVLGICYGMQ-LIVQK  102 (536)
T ss_pred             chhhHHHHHHHHhcCCcEEEECHHHH-HHHHH
Confidence            2232 233333456899999999766 57653

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=91.86  E-value=0.58  Score=44.35  Aligned_cols=75  Identities=17%  Similarity=0.105  Sum_probs=58.8

Q ss_pred             HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523          238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  317 (405)
Q Consensus       238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~  317 (405)
                      ..+..|.+.|+++.++-.+-                +.+++..-++|.|++.-|.+++.   .-+..++.++++....+|
T Consensus       192 nIlr~L~~rg~~vtVVP~~t----------------~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iP  252 (368)
T COG0505         192 NILRELVKRGCRVTVVPADT----------------SAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIP  252 (368)
T ss_pred             HHHHHHHHCCCeEEEEcCCC----------------CHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCC
Confidence            46677778899988874433                45555446799999999876653   346788999999998889


Q ss_pred             EEEEchHHHHHHHc
Q 015523          318 YGAVCSSPIVLHKH  331 (405)
Q Consensus       318 i~aic~g~~~La~a  331 (405)
                      +.+||-|=.+|+.|
T Consensus       253 ifGICLGHQllalA  266 (368)
T COG0505         253 IFGICLGHQLLALA  266 (368)
T ss_pred             eEEEcHHHHHHHHh
Confidence            99999999999876

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=91.78  E-value=1.8  Score=37.64  Aligned_cols=94  Identities=15%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             cCEEEEEeCCCCcHHHHH-----H----HHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcC
Q 015523          220 MPRVLIPIANGSEEIEIV-----T----IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG  290 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~-----~----~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpg  290 (405)
                      .+|++++..+.  ++|++     .    +...|...|-.|++.-.-.+         .++     ++-+.+.||.++|.|
T Consensus         4 ~kr~Alf~at~--dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g---------efP-----~~~Dl~ky~gfvIsG   67 (245)
T KOG3179|consen    4 QKRIALFLATP--DSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG---------EFP-----QEEDLEKYDGFVISG   67 (245)
T ss_pred             ceeEEEEecCC--chhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC---------CCC-----ChhhhhhhceEEEeC
Confidence            47888887653  22222     2    23444455677777655443         111     222347799999999


Q ss_pred             CccchHhhhcC---hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          291 GVAGAERLQKS---RILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       291 G~~~~~~~~~~---~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ...++..  +.   ..|..++++.....+.|.+||-|=.++|++
T Consensus        68 S~~dAf~--d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara  109 (245)
T KOG3179|consen   68 SKHDAFS--DADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA  109 (245)
T ss_pred             Ccccccc--cchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence            7643322  22   267778888878889999999999999987

>TIGR02069 cyanophycinase cyanophycinase

Probab=91.75  E-value=0.92  Score=41.61  Aligned_cols=99  Identities=21%  Similarity=0.232  Sum_probs=65.7

Q ss_pred             CcCEEEEEeCCCCcHHH-HHHHHHHHHhCCC-eEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          219 RMPRVLIPIANGSEEIE-IVTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e-~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      ...||+++-.-...+.+ .....+.|.+.|+ .+.++..... .       .-..+...+-+  ...|+|++.||.  ..
T Consensus        27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~-------~a~~~~~~~~l--~~ad~I~~~GGn--q~   94 (250)
T TIGR02069        27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E-------DASDENAIALL--SNATGIFFTGGD--QL   94 (250)
T ss_pred             CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H-------HccCHHHHHHH--hhCCEEEEeCCC--HH
Confidence            34689988765444434 3456678888887 4666655321 0       00001111223  678999999995  43


Q ss_pred             h---hhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523          297 R---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH  329 (405)
Q Consensus       297 ~---~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La  329 (405)
                      .   ..+...+.+.|++.+++|.++++..+|+.++.
T Consensus        95 ~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~  130 (250)
T TIGR02069        95 RITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS  130 (250)
T ss_pred             HHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence            3   34677788899999999999999999999774

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=91.71  E-value=0.8  Score=39.67  Aligned_cols=86  Identities=16%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  101 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~  101 (405)
                      ||+.|+++... ..+++.|+..+.++.++--+.-               +.......++|.|+|--|...+.   +....
T Consensus         4 IL~IDNyDSFt-yNLv~yl~~lg~~v~V~rnd~~---------------~~~~~~~~~pd~iviSPGPG~P~---d~G~~   64 (191)
T COG0512           4 ILLIDNYDSFT-YNLVQYLRELGAEVTVVRNDDI---------------SLELIEALKPDAIVISPGPGTPK---DAGIS   64 (191)
T ss_pred             EEEEECccchH-HHHHHHHHHcCCceEEEECCcc---------------CHHHHhhcCCCEEEEcCCCCChH---HcchH
Confidence            34445555443 5667888888877777765421               11122223589999976632222   45567


Q ss_pred             HHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523          102 KKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus       102 ~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+.|+++ ....||.++|-|-. .|+.
T Consensus        65 ~~~i~~~-~~~~PiLGVCLGHQ-ai~~   89 (191)
T COG0512          65 LELIRRF-AGRIPILGVCLGHQ-AIAE   89 (191)
T ss_pred             HHHHHHh-cCCCCEEEECccHH-HHHH
Confidence            7888877 77789999999765 4554

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=91.60  E-value=1  Score=48.02  Aligned_cols=47  Identities=13%  Similarity=0.087  Sum_probs=32.8

Q ss_pred             CCccEEEEcCCccchHhhhcChHHHHHHHHHhhc----CCEEEEEchHHHHHHHc
Q 015523          281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA----GRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       281 ~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~----~k~i~aic~g~~~La~a  331 (405)
                      ..||+|||.||.+.+.    +..-..++++..+.    ..||.+||-|..+|+.+
T Consensus        52 ~~~D~VVIspGPG~p~----~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a  102 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPN----NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA  102 (742)
T ss_pred             cCCCEEEECCCCCCcc----chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence            5799999988865432    22223444444433    59999999999999876

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=91.53  E-value=0.29  Score=44.40  Aligned_cols=42  Identities=24%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523           79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV  124 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~  124 (405)
                      .+|.|++|||. +..   ..+....+++.+++.++|+.+||.|-..
T Consensus        55 ~~dgivl~GG~-~~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~   96 (235)
T cd01746          55 GADGILVPGGF-GIR---GVEGKILAIKYARENNIPFLGICLGMQL   96 (235)
T ss_pred             cCCEEEECCCC-CCc---chhhHHHHHHHHHHCCceEEEEEhHHHH
Confidence            69999999994 222   2346677899999999999999997653

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=91.39  E-value=0.3  Score=43.76  Aligned_cols=49  Identities=18%  Similarity=0.295  Sum_probs=38.9

Q ss_pred             CCccEEEEcCCccchH---------------hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          281 SVYDLIILPGGVAGAE---------------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       281 ~~~D~livpgG~~~~~---------------~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      +..|.|+++||. +..               +..+|.--+..|+++.++++||.+||-|..+|.-
T Consensus        59 ~~iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNV  122 (243)
T COG2071          59 DLIDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNV  122 (243)
T ss_pred             hhccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHH
Confidence            557999999993 221               1235667889999999999999999999998853

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=90.88  E-value=0.68  Score=40.73  Aligned_cols=96  Identities=14%  Similarity=0.169  Sum_probs=69.2

Q ss_pred             cCEEEEEeCCCCcHHH---HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCc--CCCCccEEEEcCCccc
Q 015523          220 MPRVLIPIANGSEEIE---IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA--AESVYDLIILPGGVAG  294 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e---~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~--~~~~~D~livpgG~~~  294 (405)
                      .++|+++-+-+.....   +....++|.+.|+.+.-++....               ..+++  -..+.|+|+|.||  +
T Consensus        32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~---------------~~~~Ie~~l~~~d~IyVgGG--N   94 (224)
T COG3340          32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP---------------PLAAIENKLMKADIIYVGGG--N   94 (224)
T ss_pred             CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC---------------CHHHHHHhhhhccEEEECCc--h
Confidence            5688888765543333   45678899999988887766553               12222  0144799999998  5


Q ss_pred             hHhh---hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523          295 AERL---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  332 (405)
Q Consensus       295 ~~~~---~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG  332 (405)
                      +..+   .+..-+.+.|++..++|.+.++..+|+.+-...+
T Consensus        95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I  135 (224)
T COG3340          95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI  135 (224)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence            6554   4566789999999999999999999988776554

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=90.68  E-value=0.81  Score=43.03  Aligned_cols=105  Identities=12%  Similarity=0.132  Sum_probs=58.3

Q ss_pred             CCCCcEEEEEe-cCCCchhhHHHHHHHHHhc--CCEEEEEecCCCc--eeEeccCcEEecCcccCCCCCCcccEEEEcCC
Q 015523           14 PSFALNVLVPV-GFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQL--EVEASSGTRLVADTSISNCSHQVFDLIALPGG   88 (405)
Q Consensus        14 ~~~~~ki~ill-~~g~~~~e~~~~~~~l~~~--~~~v~~vs~~~~~--~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg   88 (405)
                      ..++.||+||= +++-...| .-+...|...  .++++++.+..-.  ....++=.++.  .+++++....||++||.|.
T Consensus        32 dirpl~i~ilNlMp~k~~TE-~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y--~~~~~i~~~~~DG~IITGA  108 (302)
T PRK05368         32 DIRPLKILILNLMPKKIETE-TQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFY--CTFEDIKDEKFDGLIITGA  108 (302)
T ss_pred             cCCCccEEEEeCCCCCchHH-HHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhc--cCHHHhccCCCCEEEEcCC
Confidence            45688999984 66666666 3445555444  3556666554410  01111111111  2344555568999999998


Q ss_pred             chhhhcccc------ChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523           89 MPGSVRLRD------CEILKKITSKQAEEKRLYGAICAAPAV  124 (405)
Q Consensus        89 ~~~~~~~~~------~~~~~~~l~~~~~~~~~i~aic~g~~~  124 (405)
                      ......+.+      -.++++|++   ++.+++.++|-|...
T Consensus       109 p~e~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQa  147 (302)
T PRK05368        109 PVEQLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQA  147 (302)
T ss_pred             CCCCccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHH
Confidence            422111212      234455555   468999999997553

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=90.07  E-value=0.42  Score=43.96  Aligned_cols=50  Identities=20%  Similarity=0.128  Sum_probs=34.9

Q ss_pred             cccEEEEcCCchhhh-------------ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           79 VFDLIALPGGMPGSV-------------RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        79 ~~d~liipgg~~~~~-------------~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .+|.++++||..+..             ....+...+++++.++++++||.+||-|-. +|+.+
T Consensus        61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Q-llnva  123 (254)
T PRK11366         61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQ-ELVVA  123 (254)
T ss_pred             hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            489999999831221             001123457899999999999999999766 46543

>PRK00074 guaA GMP synthase; Reviewed

Probab=89.75  E-value=1.2  Score=45.39  Aligned_cols=87  Identities=16%  Similarity=0.046  Sum_probs=52.6

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD   97 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~   97 (405)
                      .+|+||=+-   ..-...+...+++.|...+++..+..  .           ..+.+.   ++|.+|+|||. ....-..
T Consensus         4 ~~i~vlD~G---sq~~~li~r~lrelg~~~~v~p~~~~--~-----------~~l~~~---~~dgIIlsGGp-~sv~~~~   63 (511)
T PRK00074          4 DKILILDFG---SQYTQLIARRVRELGVYSEIVPYDIS--A-----------EEIRAF---NPKGIILSGGP-ASVYEEG   63 (511)
T ss_pred             CEEEEEECC---CCcHHHHHHHHHHCCCeEEEEECCCC--H-----------HHHhcc---CCCEEEECCCC-cccccCC
Confidence            467777552   22234457888888998888864432  0           112222   47999999994 3211111


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+.+   .+..++.++||.+||.|-. +|+.
T Consensus        64 ~p~~---~~~i~~~~~PvLGIC~G~Q-lLa~   90 (511)
T PRK00074         64 APRA---DPEIFELGVPVLGICYGMQ-LMAH   90 (511)
T ss_pred             Cccc---cHHHHhCCCCEEEECHHHH-HHHH
Confidence            2223   3445667999999999755 5665

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=89.67  E-value=1.1  Score=45.92  Aligned_cols=89  Identities=15%  Similarity=0.044  Sum_probs=52.8

Q ss_pred             EecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHH
Q 015523           23 PVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILK  102 (405)
Q Consensus        23 ll~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~  102 (405)
                      |+.|+++... ..+.+.|++.++++.++..+-  +          .+..++++...++|.||+-||...+.+.    ...
T Consensus         5 LiIDn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~----~~~   67 (531)
T PRK09522          5 LLLDNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEA----GCM   67 (531)
T ss_pred             EEEeCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhC----CCC
Confidence            4445444433 557888888899888887442  1          1112223322357899998884333222    222


Q ss_pred             HHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          103 KITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       103 ~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .++.+.+..++||.+||-|-. +|+.+
T Consensus        68 ~~i~~~~~~~iPILGIClG~Q-lLa~a   93 (531)
T PRK09522         68 PELLTRLRGKLPIIGICLGHQ-AIVEA   93 (531)
T ss_pred             HHHHHHHhcCCCEEEEcHHHH-HHHHh
Confidence            334444567899999999766 56653

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=89.50  E-value=0.66  Score=47.58  Aligned_cols=87  Identities=9%  Similarity=0.042  Sum_probs=53.9

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCE-EEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQ-VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEI  100 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~-v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~  100 (405)
                      ||+.|+++... ..+.+.|++.+.+ +.++.++.. .              +++.....+|.||+.||...+.   ++..
T Consensus         2 il~idn~dsft-~nl~~~l~~~g~~~v~~~~~~~~-~--------------~~~~~~~~~d~vIlsgGP~~p~---~~~~   62 (534)
T PRK14607          2 IILIDNYDSFT-YNIYQYIGELGPEEIEVVRNDEI-T--------------IEEIEALNPSHIVISPGPGRPE---EAGI   62 (534)
T ss_pred             EEEEECchhHH-HHHHHHHHHcCCCeEEEECCCCC-C--------------HHHHHhcCCCEEEECCCCCChh---hCCc
Confidence            45556655554 3467888888874 666655432 1              1222223589999999943232   2333


Q ss_pred             HHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          101 LKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       101 ~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ..++++. ...+.||.+||-|-. +|+.+
T Consensus        63 ~~~li~~-~~~~~PvLGIClG~Q-lLa~a   89 (534)
T PRK14607         63 SVEVIRH-FSGKVPILGVCLGHQ-AIGYA   89 (534)
T ss_pred             cHHHHHH-hhcCCCEEEEcHHHH-HHHHH
Confidence            4566665 467899999999766 56653

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=89.49  E-value=1.1  Score=39.46  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=46.6

Q ss_pred             HHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc-ccC-hHHHHHHHHHHHcCC
Q 015523           36 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL-RDC-EILKKITSKQAEEKR  113 (405)
Q Consensus        36 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~-~~~-~~~~~~l~~~~~~~~  113 (405)
                      +..+..+.|+.++++-.+-.                 +.++...||++++-||..-.-.+ .++ ..-..-|+++...++
T Consensus        26 Lr~ra~~rgi~v~i~~vsl~-----------------d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~   88 (250)
T COG3442          26 LRQRAEKRGIKVEIVEVSLT-----------------DTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGK   88 (250)
T ss_pred             ehHHHHhcCCceEEEEeecC-----------------CCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCC
Confidence            34445555666666644332                 12333479999999985221111 122 344567888999999


Q ss_pred             EEEEEccchHHhhhh
Q 015523          114 LYGAICAAPAVTLLP  128 (405)
Q Consensus       114 ~i~aic~g~~~~La~  128 (405)
                      |+.+||.|.. +|.+
T Consensus        89 p~laiCgg~Q-lLG~  102 (250)
T COG3442          89 PVLAICGGYQ-LLGQ  102 (250)
T ss_pred             cEEEEccchh-hccc
Confidence            9999999766 4653

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=89.27  E-value=1.6  Score=43.52  Aligned_cols=136  Identities=18%  Similarity=0.146  Sum_probs=77.3

Q ss_pred             CCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccCccccccccccccc--c-CCcCEEEEEeCCCC-cHHHHHHHHHH
Q 015523          167 RGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWF--F-DRMPRVLIPIANGS-EEIEIVTIVDI  242 (405)
Q Consensus       167 ~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~V~il~~~g~-~~~e~~~~~~~  242 (405)
                      .|-.+.++=.+.++++..|.+.--.+ .++-....+   ..+.++...++  . .+..+|+++.++.. +..++. |...
T Consensus       199 RGd~~ll~~gik~Le~~tg~~vlGv~-P~~~~~~~p---~EDS~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~d-pL~~  273 (486)
T COG1492         199 RGDESLLDPGLKWLEELTGVPVLGVL-PYLKDALRP---AEDSLSLEQPKAGGNKRAIRIAVIRLPRISNFTDFD-PLRA  273 (486)
T ss_pred             CCCHHHHhhHHHHHHHhhCCeeEeec-cccccccCc---cccccCchhhcccCCCCceEEEEecCCCccccccch-hhhc
Confidence            34466777789999998777543211 122222111   12222222211  1 24578999988843 444432 2222


Q ss_pred             HHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---hhcChHHHHHHHHHhhcCCEEE
Q 015523          243 LRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQKVAGRIYG  319 (405)
Q Consensus       243 l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---~~~~~~l~~~l~~~~~~~k~i~  319 (405)
                      .  .+.++.++.+..                   ++  .+.|++|+||...-..+   +++.. +-+-|.++.+++.+|.
T Consensus       274 ~--~~v~v~~v~~~~-------------------~l--~~~dlvIlPGsk~t~~DL~~lr~~g-~d~~i~~~~~~~~~vi  329 (486)
T COG1492         274 E--PDVRVRFVKPGS-------------------DL--RDADLVILPGSKNTIADLKILREGG-MDEKILEYARKGGDVI  329 (486)
T ss_pred             C--CCeEEEEeccCC-------------------CC--CCCCEEEeCCCcccHHHHHHHHHcC-HHHHHHHHHhCCCCEE
Confidence            2  467777776554                   22  45899999998632222   22332 2234555667799999


Q ss_pred             EEchHHHHHHHc
Q 015523          320 AVCSSPIVLHKH  331 (405)
Q Consensus       320 aic~g~~~La~a  331 (405)
                      +||.|-.+|.+.
T Consensus       330 GICGG~QmLG~~  341 (486)
T COG1492         330 GICGGYQMLGRR  341 (486)
T ss_pred             EEcchHHhhhhh
Confidence            999999999753

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=89.10  E-value=0.77  Score=28.63  Aligned_cols=27  Identities=26%  Similarity=0.128  Sum_probs=19.4

Q ss_pred             cEEEEEecC-----------CCchhhHHHHHHHHHhcC
Q 015523           18 LNVLVPVGF-----------GTEEMEAVIIVDVLRRAG   44 (405)
Q Consensus        18 ~ki~ill~~-----------g~~~~e~~~~~~~l~~~~   44 (405)
                      |||+|++..           |+...|++.|+++|+++|
T Consensus         1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen    1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence            467777644           788899999999999875

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=88.87  E-value=1.3  Score=43.99  Aligned_cols=88  Identities=18%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHh-cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      +..+|+++.+|..+-..-   ++.|+. .+.++.++.+..                   +++  +.|++|+||-.....+
T Consensus       250 ~~i~Iav~~lp~isNFtD---~dpL~~~~~v~v~~v~~~~-------------------~l~--~~dlvIlPGsk~t~~D  305 (486)
T COG1492         250 RAIRIAVIRLPRISNFTD---FDPLRAEPDVRVRFVKPGS-------------------DLR--DADLVILPGSKNTIAD  305 (486)
T ss_pred             CceEEEEecCCCcccccc---chhhhcCCCeEEEEeccCC-------------------CCC--CCCEEEeCCCcccHHH
Confidence            456888888774332222   123333 367777776554                   343  4799999998532222


Q ss_pred             cc--cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           95 LR--DCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        95 ~~--~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      +.  ....+-+-+.++.+++.+|.+||.|-. +|.+
T Consensus       306 L~~lr~~g~d~~i~~~~~~~~~viGICGG~Q-mLG~  340 (486)
T COG1492         306 LKILREGGMDEKILEYARKGGDVIGICGGYQ-MLGR  340 (486)
T ss_pred             HHHHHHcCHHHHHHHHHhCCCCEEEEcchHH-hhhh
Confidence            21  222334456667778999999999633 5653

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.84  E-value=0.65  Score=41.62  Aligned_cols=50  Identities=18%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             CCccEEEEcCCccchH---------------hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          281 SVYDLIILPGGVAGAE---------------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       281 ~~~D~livpgG~~~~~---------------~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      +..|.|++|||..+..               ...++.--+.+++.+.++++||.+||-|..+|.-
T Consensus        57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv  121 (217)
T PF07722_consen   57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNV  121 (217)
T ss_dssp             HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHH
T ss_pred             hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHH
Confidence            5689999999963220               1123444566777788999999999999998854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=88.58  E-value=2.2  Score=37.92  Aligned_cols=99  Identities=16%  Similarity=0.072  Sum_probs=60.6

Q ss_pred             CCcEEEEEecCCCchhh-HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcc-cCCCCCCcccEEEEcCCchhh-
Q 015523           16 FALNVLVPVGFGTEEME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTS-ISNCSHQVFDLIALPGGMPGS-   92 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e-~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~-~~~~~~~~~d~liipgg~~~~-   92 (405)
                      ...||+++-.......+ .....+.|++.|+++..+-.-..           ..+.. .+.+  ...|+|+++||- .. 
T Consensus        28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-----------~~~~~~~~~l--~~ad~I~~~GG~-~~~   93 (210)
T cd03129          28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT-----------ANDPDVVARL--LEADGIFVGGGN-QLR   93 (210)
T ss_pred             CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC-----------CCCHHHHHHH--hhCCEEEEcCCc-HHH
Confidence            35688888777654333 44566788888877665532210           01111 1122  368999999993 22 


Q ss_pred             -hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           93 -VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        93 -~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                       ........+.+.|++.++++.++++.|.| +.++.+.
T Consensus        94 ~~~~l~~t~~~~~i~~~~~~G~v~~G~SAG-A~~~~~~  130 (210)
T cd03129          94 LLSVLRETPLLDAILKRVARGVVIGGTSAG-AAVMGET  130 (210)
T ss_pred             HHHHHHhCChHHHHHHHHHcCCeEEEcCHH-HHHhhhc
Confidence             11222334666777778899999999995 5467764

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=88.47  E-value=1  Score=44.22  Aligned_cols=76  Identities=14%  Similarity=0.032  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcC
Q 015523           33 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK  112 (405)
Q Consensus        33 ~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~  112 (405)
                      -..+++.|++.|+++.++..+..                ..++...++|.||+-||..++.   +.+...+.+++.. .+
T Consensus       251 K~nIlr~L~~~G~~v~VvP~~~~----------------~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~  310 (415)
T PLN02771        251 KHNILRRLASYGCKITVVPSTWP----------------ASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GK  310 (415)
T ss_pred             HHHHHHHHHHcCCeEEEECCCCC----------------HHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hC
Confidence            36667788888898888854431                1122122589999999832232   3355667777665 47


Q ss_pred             CEEEEEccchHHhhhhc
Q 015523          113 RLYGAICAAPAVTLLPW  129 (405)
Q Consensus       113 ~~i~aic~g~~~~La~a  129 (405)
                      +||.+||-|-. +|+.+
T Consensus       311 iPIlGICLGhQ-lLa~A  326 (415)
T PLN02771        311 VPVFGICMGHQ-LLGQA  326 (415)
T ss_pred             CCEEEEcHHHH-HHHHh
Confidence            89999999766 56653

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=88.39  E-value=1.9  Score=37.53  Aligned_cols=96  Identities=13%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             CcEEEEEecCCCc---hhhHHHHHHHHH----hcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523           17 ALNVLVPVGFGTE---EMEAVIIVDVLR----RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM   89 (405)
Q Consensus        17 ~~ki~ill~~g~~---~~e~~~~~~~l~----~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~   89 (405)
                      -+|+++++.+--+   -..+....++|.    ..|..+++.-.-.+          ..|+.  +|++  .||.++|.|..
T Consensus         4 ~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g----------efP~~--~Dl~--ky~gfvIsGS~   69 (245)
T KOG3179|consen    4 QKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG----------EFPQE--EDLE--KYDGFVISGSK   69 (245)
T ss_pred             ceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC----------CCCCh--hhhh--hhceEEEeCCc
Confidence            4689999866322   233444555554    44666766654443          12222  3443  69999999974


Q ss_pred             hhhhccccC---hHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           90 PGSVRLRDC---EILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        90 ~~~~~~~~~---~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ..+  ..+.   .++..++++.....+.|.+||-|-. ++|++
T Consensus        70 ~dA--f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQ-iiara  109 (245)
T KOG3179|consen   70 HDA--FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQ-IIARA  109 (245)
T ss_pred             ccc--cccchHHHHHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence            322  2233   2466777777788899999999877 56653

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=88.19  E-value=3.7  Score=36.20  Aligned_cols=91  Identities=16%  Similarity=0.161  Sum_probs=62.4

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCC---CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAK---VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~---~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      |+|.|..-+|.+...+-..++.|+.--   |.+..+  +++         .+..+. +.+    .--+|++|||..-...
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V--~~~---------~Li~Ep-W~~----~T~lLV~pGGaDlpY~   64 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRV--DAQ---------FLIKEP-WEE----TTLLLVFPGGADLPYV   64 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEe--eeh---------eeecCc-chh----ceEEEEecCCCCchHH
Confidence            467777778999999999999888653   344443  333         222222 443    3468899999633333


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHH
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIV  327 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~  327 (405)
                      ..-++..-+.|..+.++|....+||+|..+
T Consensus        65 ~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF   94 (253)
T COG4285          65 QVLQGLGTARIKNYVKEGGNFLGICAGGYF   94 (253)
T ss_pred             HHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence            344566677788888999999999999865

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=87.84  E-value=0.36  Score=41.57  Aligned_cols=93  Identities=14%  Similarity=0.164  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEe-eCCCccCcCCCCccEEEEcCCccchHhhhcCh-----HH
Q 015523          233 EIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKII-ADKSISDAAESVYDLIILPGGVAGAERLQKSR-----IL  304 (405)
Q Consensus       233 ~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~-~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~-----~l  304 (405)
                      ..| ..+...|....  .+++++-+..- ..+...--.+. -=.+++++....||++||.|...  ..+.-.+     ++
T Consensus        12 ~TE-~qf~rlL~~~~~qv~v~~~~~~~h-~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGApv--e~~~fe~v~Yw~El   87 (175)
T cd03131          12 QTE-RQFLRLLGNTPLQVEITFIRPSSH-SSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAPV--EHLPFEQVDYWEEL   87 (175)
T ss_pred             HHH-HHHHHHHhcCCccceEEEEecCCC-CCCCCCHHHHHHhccCHHHccccCCCEEEEeCCCc--ccCCccccchHHHH
Confidence            455 34666665554  55666666553 11110000000 01255666668999999999853  2222222     56


Q ss_pred             HHHHHHHhhcCCEEEEEchHHHHHH
Q 015523          305 KKLLKEQKVAGRIYGAVCSSPIVLH  329 (405)
Q Consensus       305 ~~~l~~~~~~~k~i~aic~g~~~La  329 (405)
                      .+.+.....++.....+|-|+.+..
T Consensus        88 ~~i~dwa~~~v~stl~iCWgaqaal  112 (175)
T cd03131          88 TEILDWAKTHVTSTLFSCWAAMAAL  112 (175)
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHH
Confidence            6666666688999999999999643

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=87.62  E-value=3.9  Score=38.67  Aligned_cols=87  Identities=15%  Similarity=0.182  Sum_probs=57.1

Q ss_pred             CCcEEEEEecCCCch--hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           16 FALNVLVPVGFGTEE--MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        16 ~~~ki~ill~~g~~~--~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      +++||+++..++-..  ..+..+.+.|++.++++.+...... ..    +....    .... ...+|.+++.||     
T Consensus         2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~~----~~~~~----~~~~-~~~~d~vi~~GG-----   66 (305)
T PRK02645          2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-DN----PYPVF----LASA-SELIDLAIVLGG-----   66 (305)
T ss_pred             CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-hc----cccch----hhcc-ccCcCEEEEECC-----
Confidence            467899998876433  3456667788888999877653331 11    11110    0111 135899999999     


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAA  121 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g  121 (405)
                          |..+++.++.....+.|++++-.|
T Consensus        67 ----DGT~l~~~~~~~~~~~pv~gin~~   90 (305)
T PRK02645         67 ----DGTVLAAARHLAPHDIPILSVNVG   90 (305)
T ss_pred             ----cHHHHHHHHHhccCCCCEEEEecC
Confidence                456777788777789999999873

>PLN02327 CTP synthase

Probab=87.53  E-value=3.1  Score=42.33  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=55.6

Q ss_pred             CCcEEEEEe-cCCCchhhHHHHHHHHHhc----CCEEEEEecCCCceeEeccCcEEecC---cccCCCCCCcccEEEEcC
Q 015523           16 FALNVLVPV-GFGTEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVAD---TSISNCSHQVFDLIALPG   87 (405)
Q Consensus        16 ~~~ki~ill-~~g~~~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~---~~~~~~~~~~~d~liipg   87 (405)
                      ...+||++- |-... ..+..+.+.|+-+    +.++++...+.. .+.. .+..-.|+   ...+.+  .++|.|++||
T Consensus       296 ~~v~IalVGKY~~l~-DAY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~-~~~~~~~~~y~~~~~~L--~~~DGIvvpG  370 (557)
T PLN02327        296 EPVRIAMVGKYTGLS-DSYLSVLKALLHASVACSRKLVIDWVAAS-DLED-ETAKETPDAYAAAWKLL--KGADGILVPG  370 (557)
T ss_pred             CceEEEEEecccCCc-HhHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCC-cccccccchhhhhHHhh--ccCCEEEeCC
Confidence            456788775 22222 2345566666544    556666655443 2221 11100110   011222  4799999999


Q ss_pred             CchhhhccccChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523           88 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV  124 (405)
Q Consensus        88 g~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~  124 (405)
                      |. +..   ..+.....++.+.++++|+.+||.|-.+
T Consensus       371 Gf-G~~---~~~G~i~ai~~are~~iP~LGIClGmQl  403 (557)
T PLN02327        371 GF-GDR---GVEGKILAAKYARENKVPYLGICLGMQI  403 (557)
T ss_pred             CC-CCc---ccccHHHHHHHHHHcCCCEEEEcHHHHH
Confidence            94 222   2234456778888899999999997553

>TIGR00337 PyrG CTP synthase

Probab=87.44  E-value=3  Score=42.21  Aligned_cols=92  Identities=17%  Similarity=0.239  Sum_probs=54.6

Q ss_pred             CCCcEEEEEe-cCCCchhhHHHHHHHHHhcCC----EEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523           15 SFALNVLVPV-GFGTEEMEAVIIVDVLRRAGA----QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM   89 (405)
Q Consensus        15 ~~~~ki~ill-~~g~~~~e~~~~~~~l~~~~~----~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~   89 (405)
                      .+..+||++- |-+. ...+..+.+.|..+++    .+.+...+.. .+...         ..+.+  .++|.|++|||.
T Consensus       287 ~~~v~IalVGKY~~~-~daY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~~~---------~~~~L--~~~dGIiLpGG~  353 (525)
T TIGR00337       287 KHEVTIGIVGKYVEL-KDSYLSVIEALKHAGAKLDTKVNIKWIDSE-DLEEE---------GAEFL--KGVDGILVPGGF  353 (525)
T ss_pred             CCCcEEEEEeCCcCC-HHHHHHHHHHHHhCccccCCEEEEEEecHH-Hhhhh---------hhhhh--cCCCEEEeCCCC
Confidence            3456888876 2222 2345677888887765    3443333221 11110         00112  358999999994


Q ss_pred             hhhhccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523           90 PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPA  123 (405)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~  123 (405)
                       +..   ..+.....++.+.+++.|+.+||.|-.
T Consensus       354 -G~~---~~~g~i~ai~~a~e~~iP~LGIClG~Q  383 (525)
T TIGR00337       354 -GER---GVEGKILAIKYARENNIPFLGICLGMQ  383 (525)
T ss_pred             -CCh---hhcChHHHHHHHHHcCCCEEEEcHHHH
Confidence             222   234455678888889999999999755

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.89  E-value=0.52  Score=39.72  Aligned_cols=81  Identities=17%  Similarity=0.112  Sum_probs=50.2

Q ss_pred             HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh-hhccccChHHHHHHHHHHHcCC
Q 015523           35 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRLRDCEILKKITSKQAEEKR  113 (405)
Q Consensus        35 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~-~~~~~~~~~~~~~l~~~~~~~~  113 (405)
                      ...++|++.|++++.+..... ...          ...+.+  ...|+|++-||-.. .........+.+.|++.+++|+
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~-~~~----------~~~~~i--~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~   70 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDR-NDA----------DILEAI--READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGG   70 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSC-GHH----------HHHHHH--HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTS
T ss_pred             HHHHHHHHCCCEEEEEeccCC-ChH----------HHHHHH--HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCC
Confidence            457888999988877765542 000          111222  25899999999311 1222345678899999999999


Q ss_pred             EEEEEccchHHhhhhc
Q 015523          114 LYGAICAAPAVTLLPW  129 (405)
Q Consensus       114 ~i~aic~g~~~~La~a  129 (405)
                      ++++.+.| +.++...
T Consensus        71 vi~G~SAG-A~i~~~~   85 (154)
T PF03575_consen   71 VIIGTSAG-AMILGPS   85 (154)
T ss_dssp             EEEEETHH-HHCTSSB
T ss_pred             EEEEEChH-HhhccCc
Confidence            99999884 6455443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=86.22  E-value=1.8  Score=40.67  Aligned_cols=50  Identities=20%  Similarity=0.304  Sum_probs=37.8

Q ss_pred             CCccEEEEcC-Cc-cchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          281 SVYDLIILPG-GV-AGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       281 ~~~D~livpg-G~-~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      ...|-+|+|| |. +.........-+.+-|++....||++.+||-|..+|-.
T Consensus        38 ~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~   89 (541)
T KOG0623|consen   38 LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFD   89 (541)
T ss_pred             ccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhc
Confidence            5678999998 21 11223345667888899999999999999999998853

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=86.08  E-value=1.7  Score=27.07  Aligned_cols=19  Identities=16%  Similarity=0.020  Sum_probs=15.1

Q ss_pred             CCCcHHHHHHHHHHHHhCC
Q 015523          229 NGSEEIEIVTIVDILRRAK  247 (405)
Q Consensus       229 ~g~~~~e~~~~~~~l~~~~  247 (405)
                      .|+...|++.|+++|.++|
T Consensus        20 TG~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen   20 TGFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             --B-HHHHHHHHHHHHHTT
T ss_pred             ceeccHHHhhHHHHHHHCc
Confidence            5899999999999999876

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=86.05  E-value=2.6  Score=45.66  Aligned_cols=89  Identities=18%  Similarity=0.137  Sum_probs=54.5

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhC-CCeEEEEeecCCceeecCCCcEEeeCCCccCcC-----CCCccEEEEcCCccchHhh
Q 015523          225 IPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAA-----ESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       225 il~~~g~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~-----~~~~D~livpgG~~~~~~~  298 (405)
                      +|+.|.++..-. .+++.|... |..+.++-.+.-               .++++.     ...||.||+-+|.+.+...
T Consensus        84 iLlIDnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~---------------~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~  147 (918)
T PLN02889         84 TLLIDNYDSYTY-NIYQELSIVNGVPPVVVRNDEW---------------TWEEVYHYLYEEKAFDNIVISPGPGSPTCP  147 (918)
T ss_pred             EEEEeCCCchHH-HHHHHHHHhcCCCEEEEeCCCC---------------CHHHHHhhhhcccCCCEEEECCCCCCccch
Confidence            455466655553 366667666 777766654421               222221     1468999998887544322


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+.....+.|.++  .+.||.+||-|-.+|+.+
T Consensus       148 ~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~  178 (918)
T PLN02889        148 ADIGICLRLLLEC--RDIPILGVCLGHQALGYV  178 (918)
T ss_pred             HHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence            2223345666543  579999999999998765

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=85.51  E-value=11  Score=40.36  Aligned_cols=143  Identities=12%  Similarity=0.138  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhcChHHHHHHHHh-cccccccCccccccccc---ccc--c-cCCcCEEEEEeCCCC-cHHHHHHHHHHHH
Q 015523          173 FEFALCLVEQLFGESVAKEIGEL-LLMHNADNSLKKEEFNE---VEW--F-FDRMPRVLIPIANGS-EEIEIVTIVDILR  244 (405)
Q Consensus       173 ~~~~l~ii~~~~g~~~a~~~a~~-l~~~~~~~~~~~~~~~~---~~~--~-~~~~~~V~il~~~g~-~~~e~~~~~~~l~  244 (405)
                      ++..-+=++++.-.....++.+. +-.++.+++.  ..|+|   ...  . ....+||+||--+|. .+.|++   ..|.
T Consensus      1006 We~tsy~l~klq~npecae~e~~~i~~~~~p~~~--l~~~P~~~~~~~~~l~s~~PkVAilREeGvNg~rEMa---~af~ 1080 (1320)
T KOG1907|consen 1006 WELTSYELQKLQDNPECAEVERECIKDNYDPQYD--LYYNPAFIHNEQLFLSSTAPKVAILREEGVNGDREMA---AAFY 1080 (1320)
T ss_pred             HHHhHHHHHHHhhCHHHHHHHHhhcccccCCCCc--eeeCchhhhHHHHhhhcCCCceEEeeccccccHHHHH---HHHH
Confidence            44455556666554444444433 3334444533  33333   111  1 234579999999998 466654   5677


Q ss_pred             hCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc----------hHhhhcChHHHHHHHHHh-h
Q 015523          245 RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG----------AERLQKSRILKKLLKEQK-V  313 (405)
Q Consensus       245 ~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~----------~~~~~~~~~l~~~l~~~~-~  313 (405)
                      .+||+..=++-+.  .        +.     .....++|-.|+.+||+.-          +..+..++.++.-..+|+ +
T Consensus      1081 ~AgF~~~DVtmtD--l--------L~-----G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R 1145 (1320)
T KOG1907|consen 1081 AAGFETVDVTMTD--L--------LA-----GRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNR 1145 (1320)
T ss_pred             HcCCceeeeeeeh--h--------hc-----CceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcC
Confidence            7999877665543  0        00     1122356788888887742          223466888888888876 5


Q ss_pred             cCCEEEEEchHHHHHHHcCCCC
Q 015523          314 AGRIYGAVCSSPIVLHKHGLLK  335 (405)
Q Consensus       314 ~~k~i~aic~g~~~La~aGlL~  335 (405)
                      +...=.+||+|-.++++.|.+-
T Consensus      1146 ~DtFslGiCNGCQlms~Lg~i~ 1167 (1320)
T KOG1907|consen 1146 QDTFSLGICNGCQLMSRLGWIG 1167 (1320)
T ss_pred             CCceeeecccHhHHHHHhcccC
Confidence            6778889999999999999654

>TIGR02069 cyanophycinase cyanophycinase

Probab=84.60  E-value=4.2  Score=37.28  Aligned_cols=100  Identities=18%  Similarity=0.188  Sum_probs=61.1

Q ss_pred             cEEEEEecCCCchhh-HHHHHHHHHhcCC-EEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch-hhhc
Q 015523           18 LNVLVPVGFGTEEME-AVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP-GSVR   94 (405)
Q Consensus        18 ~ki~ill~~g~~~~e-~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~-~~~~   94 (405)
                      .||+|+-.-.....+ .....+.|++.|+ .+.++..... . .      ...+.....+  ...|+|++-||-. ....
T Consensus        29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~-~------a~~~~~~~~l--~~ad~I~~~GGnq~~l~~   98 (250)
T TIGR02069        29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E-D------ASDENAIALL--SNATGIFFTGGDQLRITS   98 (250)
T ss_pred             ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H-H------ccCHHHHHHH--hhCCEEEEeCCCHHHHHH
Confidence            489998865444333 4456678888887 4666654321 0 0      0000111122  3589999999931 1122


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ......+.+.|++.+++|.++++...| +.+++.
T Consensus        99 ~l~~t~l~~~l~~~~~~G~vi~G~SAG-A~i~~~  131 (250)
T TIGR02069        99 LLGDTPLLDRLRKRVHEGIILGGTSAG-AAVMSD  131 (250)
T ss_pred             HHcCCcHHHHHHHHHHcCCeEEEccHH-HHhccc
Confidence            235667888999999999999999995 535543

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=84.01  E-value=1.5  Score=40.74  Aligned_cols=78  Identities=18%  Similarity=0.119  Sum_probs=43.3

Q ss_pred             HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCC-CCCCcccEEEEcCCchhhhccccChHHHHHHHHHH---H
Q 015523           35 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISN-CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA---E  110 (405)
Q Consensus        35 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~-~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~---~  110 (405)
                      ..++.+.++|..|..+-.+..             ...+++ +  ..+|.|++|||..........+....+++.+.   +
T Consensus        24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~l--~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~   88 (273)
T cd01747          24 SYVKFLESAGARVVPIWINES-------------EEYYDKLF--KSINGILFPGGAVDIDTSGYARTAKIIYNLALERND   88 (273)
T ss_pred             HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHHH--hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhh
Confidence            466777888887766643321             012222 2  35899999999322211111223334444444   3


Q ss_pred             cC--CEEEEEccchHHhhhh
Q 015523          111 EK--RLYGAICAAPAVTLLP  128 (405)
Q Consensus       111 ~~--~~i~aic~g~~~~La~  128 (405)
                      .|  .||.++|-|.. +|+.
T Consensus        89 ~g~~~Pv~GiClG~Q-lL~~  107 (273)
T cd01747          89 AGDYFPVWGTCLGFE-LLTY  107 (273)
T ss_pred             cCCCCcEEEEcHHHH-HHHH
Confidence            34  79999999755 4554

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=83.22  E-value=8  Score=34.17  Aligned_cols=90  Identities=22%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhc---CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~---~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      |+|.|.--.|.+...+...+..|+.-   -+.+..|.  ++ .        +.. ..+.+    .--.|++|||. +...
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~--~~-~--------Li~-EpW~~----~T~lLV~pGGa-DlpY   63 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVD--AQ-F--------LIK-EPWEE----TTLLLVFPGGA-DLPY   63 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEee--eh-e--------eec-Ccchh----ceEEEEecCCC-CchH
Confidence            47888888899999999999888853   23555543  22 1        111 11222    35789999993 2221


Q ss_pred             -cccChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523           95 -LRDCEILKKITSKQAEEKRLYGAICAAPAV  124 (405)
Q Consensus        95 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~  124 (405)
                       -.-++..-+-+....++|....+||.|+.|
T Consensus        64 ~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF   94 (253)
T COG4285          64 VQVLQGLGTARIKNYVKEGGNFLGICAGGYF   94 (253)
T ss_pred             HHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence             122344456677788999999999998765

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=82.72  E-value=9.1  Score=36.23  Aligned_cols=92  Identities=15%  Similarity=0.142  Sum_probs=60.0

Q ss_pred             CcCEEEEEeCCCCcH--HHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          219 RMPRVLIPIANGSEE--IEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       219 ~~~~V~il~~~g~~~--~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      +++||+++.-++-..  ..+..+.+.|.+.|+++.+...... ..    +..     .+.......+|++++.||     
T Consensus         2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~~----~~~-----~~~~~~~~~~d~vi~~GG-----   66 (305)
T PRK02645          2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-DN----PYP-----VFLASASELIDLAIVLGG-----   66 (305)
T ss_pred             CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-hc----ccc-----chhhccccCcCEEEEECC-----
Confidence            357899998876533  3355667778888998777554332 11    111     011111246899999998     


Q ss_pred             hhhcChHHHHHHHHHhhcCCEEEEEch-HHH-HHH
Q 015523          297 RLQKSRILKKLLKEQKVAGRIYGAVCS-SPI-VLH  329 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~k~i~aic~-g~~-~La  329 (405)
                          |..+++.++.+...+.++.+|-. |.. +|+
T Consensus        67 ----DGT~l~~~~~~~~~~~pv~gin~~G~lGFL~   97 (305)
T PRK02645         67 ----DGTVLAAARHLAPHDIPILSVNVGGHLGFLT   97 (305)
T ss_pred             ----cHHHHHHHHHhccCCCCEEEEecCCcceEec
Confidence                44777888888778999999987 654 444

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=82.24  E-value=1.1  Score=42.47  Aligned_cols=57  Identities=21%  Similarity=0.059  Sum_probs=41.3

Q ss_pred             cCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           68 ADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        68 ~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+.+.+++-.-++|.|++.-|..++   ..-+..++.+++.....+||.+||-|-. +|+.
T Consensus       209 ~~t~~eeIl~~~pDGiflSNGPGDP---~~~~~~i~~ik~l~~~~iPifGICLGHQ-llal  265 (368)
T COG0505         209 ADTSAEEILALNPDGIFLSNGPGDP---APLDYAIETIKELLGTKIPIFGICLGHQ-LLAL  265 (368)
T ss_pred             CCCCHHHHHhhCCCEEEEeCCCCCh---hHHHHHHHHHHHHhccCCCeEEEcHHHH-HHHH
Confidence            3444555433479999998884333   2346788899999999899999999877 5664

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=82.23  E-value=9  Score=35.69  Aligned_cols=87  Identities=15%  Similarity=0.122  Sum_probs=54.7

Q ss_pred             cEEEEEecCCCc--hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           18 LNVLVPVGFGTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        18 ~ki~ill~~g~~--~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      |||+|+...+-.  ...+..+.++|++.++++.+...... ....   ..   ..........++|++|+.||       
T Consensus         1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~-~~~~---~~---~~~~~~~~~~~~d~vi~iGG-------   66 (277)
T PRK03708          1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYE-HLPE---FS---EEDVLPLEEMDVDFIIAIGG-------   66 (277)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcCc---cc---ccccccccccCCCEEEEEeC-------
Confidence            589999876643  33455677788899999888643221 1100   00   00111222236899999999       


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAA  121 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g  121 (405)
                        |..+++.++ .+..+.||.++-.|
T Consensus        67 --DGTlL~a~~-~~~~~~pi~gIn~G   89 (277)
T PRK03708         67 --DGTILRIEH-KTKKDIPILGINMG   89 (277)
T ss_pred             --cHHHHHHHH-hcCCCCeEEEEeCC
Confidence              356667777 67778999998874

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=81.49  E-value=2.7  Score=37.82  Aligned_cols=45  Identities=16%  Similarity=0.116  Sum_probs=33.6

Q ss_pred             cccEEEEcCCchhhhc---------------cccChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523           79 VFDLIALPGGMPGSVR---------------LRDCEILKKITSKQAEEKRLYGAICAAPAV  124 (405)
Q Consensus        79 ~~d~liipgg~~~~~~---------------~~~~~~~~~~l~~~~~~~~~i~aic~g~~~  124 (405)
                      ..|.|+++||. +...               ...|.--+..|+++.++++||.+||=|..+
T Consensus        60 ~iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Ql  119 (243)
T COG2071          60 LIDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQL  119 (243)
T ss_pred             hccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHH
Confidence            57999999993 2111               123445678999999999999999997553

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=81.29  E-value=12  Score=34.96  Aligned_cols=89  Identities=16%  Similarity=0.138  Sum_probs=56.2

Q ss_pred             CEEEEEeCCCC--cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          221 PRVLIPIANGS--EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       221 ~~V~il~~~g~--~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      |||+|+.-.+-  ....+..+.+.|...|+++.+...... ....   ..   ...+.+....++|++++.||       
T Consensus         1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~-~~~~---~~---~~~~~~~~~~~~d~vi~iGG-------   66 (277)
T PRK03708          1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYE-HLPE---FS---EEDVLPLEEMDVDFIIAIGG-------   66 (277)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcCc---cc---ccccccccccCCCEEEEEeC-------
Confidence            57899877664  333355667778899999888643221 1100   00   00111222246899999998       


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHH
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPI  326 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~  326 (405)
                        |..+++.++ ....+.+|.++-.|..
T Consensus        67 --DGTlL~a~~-~~~~~~pi~gIn~G~l   91 (277)
T PRK03708         67 --DGTILRIEH-KTKKDIPILGINMGTL   91 (277)
T ss_pred             --cHHHHHHHH-hcCCCCeEEEEeCCCC
Confidence              446777778 7777899999988874

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=80.92  E-value=4.5  Score=35.73  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             CcEEEEEecCCCchhh---HHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           17 ALNVLVPVGFGTEEME---AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e---~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      .+||+++-+-+.+...   .....++|...|+.+.-+..... +.           ..+++.- .+-|+|+|-||  +..
T Consensus        32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~-~~-----------~~Ie~~l-~~~d~IyVgGG--NTF   96 (224)
T COG3340          32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP-PL-----------AAIENKL-MKADIIYVGGG--NTF   96 (224)
T ss_pred             CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC-CH-----------HHHHHhh-hhccEEEECCc--hHH
Confidence            4589999877655443   34456777777887777765543 11           1112111 24799999998  444


Q ss_pred             cc---ccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523           94 RL---RDCEILKKITSKQAEEKRLYGAICAAPA  123 (405)
Q Consensus        94 ~~---~~~~~~~~~l~~~~~~~~~i~aic~g~~  123 (405)
                      .+   .....+.+.|++.+++|++.++..+| +
T Consensus        97 ~LL~~lke~gld~iIr~~vk~G~~YiG~SAG-A  128 (224)
T COG3340          97 NLLQELKETGLDDIIRERVKAGTPYIGWSAG-A  128 (224)
T ss_pred             HHHHHHHHhCcHHHHHHHHHcCCceEEeccC-c
Confidence            43   23456788999999999999999885 5

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=80.76  E-value=7.4  Score=41.61  Aligned_cols=46  Identities=24%  Similarity=0.134  Sum_probs=29.5

Q ss_pred             cccEEEEcCCchhhhccccChHHHHHHHHHHHc----CCEEEEEccchHHhhhhc
Q 015523           79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEE----KRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~----~~~i~aic~g~~~~La~a  129 (405)
                      .||.|||.||. +...   ++.-..++.+.++.    ..||.+||-|.. +|+.+
T Consensus        53 ~~D~VVIspGP-G~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~Q-lLa~a  102 (742)
T TIGR01823        53 LFDAIVVGPGP-GNPN---NAQDMGIISELWELANLDEVPVLGICLGFQ-SLCLA  102 (742)
T ss_pred             CCCEEEECCCC-CCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhH-HHHhh
Confidence            69999998883 3321   22223445555544    499999999766 56654

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=80.51  E-value=14  Score=34.95  Aligned_cols=94  Identities=14%  Similarity=0.124  Sum_probs=57.4

Q ss_pred             CCcEEEEEecCCCc-h-hhHHHHHHHHHhcCCEEEEEecCCCceeEecc-----CcEEecCccc-CCCCCCcccEEEEcC
Q 015523           16 FALNVLVPVGFGTE-E-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASS-----GTRLVADTSI-SNCSHQVFDLIALPG   87 (405)
Q Consensus        16 ~~~ki~ill~~g~~-~-~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~-----g~~v~~~~~~-~~~~~~~~d~liipg   87 (405)
                      +++||+|+.-.+-. . ..+..+.++|.+.++++.+...... ......     |.. .+.... .... .+.|++|+.|
T Consensus         4 ~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~D~vi~lG   80 (306)
T PRK03372          4 ASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAV-DLGATHPAPDDFRA-MEVVDADPDAA-DGCELVLVLG   80 (306)
T ss_pred             CccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhh-hhcccccccccccc-cccccchhhcc-cCCCEEEEEc
Confidence            45679999876543 2 2345566678888998888654332 111000     000 000010 1121 2589999999


Q ss_pred             CchhhhccccChHHHHHHHHHHHcCCEEEEEccc
Q 015523           88 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA  121 (405)
Q Consensus        88 g~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g  121 (405)
                      |         |..+++..+.+...+.||.+|-.|
T Consensus        81 G---------DGT~L~aar~~~~~~~PilGIN~G  105 (306)
T PRK03372         81 G---------DGTILRAAELARAADVPVLGVNLG  105 (306)
T ss_pred             C---------CHHHHHHHHHhccCCCcEEEEecC
Confidence            9         467778888888889999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	405
3ot1_A	208	Crystal Structure Of Vc2308 Protein Length = 208		1e-27
3ot1_A	208	Crystal Structure Of Vc2308 Protein Length = 208		1e-15
3ot1_B	208	Crystal Structure Of Vc2308 Protein Length = 208		2e-26
3ot1_B	208	Crystal Structure Of Vc2308 Protein Length = 208		3e-14
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		3e-25
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		3e-24
3b36_A	192	Structure Of M26l Dj-1 Length = 192		1e-24
3b36_A	192	Structure Of M26l Dj-1 Length = 192		9e-20
1ucf_A	189	The Crystal Structure Of Dj-1, A Protein Related To		2e-24
1ucf_A	189	The Crystal Structure Of Dj-1, A Protein Related To		1e-19
3sf8_B	191	Structural Insights Into Thiol Stabilization Of Dj-		2e-24
3sf8_B	191	Structural Insights Into Thiol Stabilization Of Dj-		1e-19
1pe0_A	197	Crystal Structure Of The K130r Mutant Of Human Dj-1		2e-24
1pe0_A	197	Crystal Structure Of The K130r Mutant Of Human Dj-1		2e-19
1j42_A	189	Crystal Structure Of Human Dj-1 Length = 189		2e-24
1j42_A	189	Crystal Structure Of Human Dj-1 Length = 189		1e-19
2rk4_A	197	Structure Of M26i Dj-1 Length = 197		2e-24
2rk4_A	197	Structure Of M26i Dj-1 Length = 197		2e-19
2r1u_A	187	Dj-1 Activation By Catechol Quinone Modification Le		3e-24
2r1u_A	187	Dj-1 Activation By Catechol Quinone Modification Le		1e-19
3cza_A	197	Crystal Structure Of E18d Dj-1 Length = 197		4e-24
3cza_A	197	Crystal Structure Of E18d Dj-1 Length = 197		3e-19
3cy6_A	197	Crystal Structure Of E18q Dj-1 Length = 197		5e-24
3cy6_A	197	Crystal Structure Of E18q Dj-1 Length = 197		3e-19
2rk3_A	197	Structure Of A104t Dj-1 Length = 197		6e-24
2rk3_A	197	Structure Of A104t Dj-1 Length = 197		4e-19
3b3a_A	192	Structure Of E163kR145E DJ-1 Length = 192		7e-24
3b3a_A	192	Structure Of E163kR145E DJ-1 Length = 192		4e-19
3b38_A	192	Structure Of A104v Dj-1 Length = 192		8e-24
3b38_A	192	Structure Of A104v Dj-1 Length = 192		6e-19
3cz9_A	197	Crystal Structure Of E18l Dj-1 Length = 197		2e-23
3cz9_A	197	Crystal Structure Of E18l Dj-1 Length = 197		1e-18
2r1t_B	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		2e-23
2r1t_B	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		3e-18
2r1t_A	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		3e-23
2r1t_A	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		3e-18
3sf8_A	191	Structural Insights Into Thiol Stabilization Of Dj-		3e-23
3sf8_A	191	Structural Insights Into Thiol Stabilization Of Dj-		4e-18
1soa_A	189	Human Dj-1 With Sulfinic Acid Length = 189		3e-23
1soa_A	189	Human Dj-1 With Sulfinic Acid Length = 189		4e-18
1pdv_A	197	Crystal Structure Of Human Dj-1, P 31 2 1 Space Gro		5e-23
1pdv_A	197	Crystal Structure Of Human Dj-1, P 31 2 1 Space Gro		2e-18
3bwe_A	189	Crystal Structure Of Aggregated Form Of Dj1 Length		5e-23
3bwe_A	189	Crystal Structure Of Aggregated Form Of Dj1 Length		2e-18
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		9e-23
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		7e-21
3f71_A	196	Crystal Structure Of E18d Dj-1 With Oxidized C106 L		1e-22
3f71_A	196	Crystal Structure Of E18d Dj-1 With Oxidized C106 L		7e-18
3ezg_A	196	Crystal Structure Of E18q Dj-1 With Oxidized C106 L		1e-22
3ezg_A	196	Crystal Structure Of E18q Dj-1 With Oxidized C106 L		6e-18
3cyf_A	197	Crystal Structure Of E18n Dj-1 Length = 197		1e-22
3cyf_A	197	Crystal Structure Of E18n Dj-1 Length = 197		2e-17
2rk6_A	192	Structure Of E163k Dj-1 Length = 192		1e-22
2rk6_A	192	Structure Of E163k Dj-1 Length = 192		8e-18
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		4e-07
4ge0_A	194	Schizosaccharomyces Pombe Dj-1 T114p Mutant Length		5e-07
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		6e-07
4ge3_A	194	Schizosaccharomyces Pombe Dj-1 T114v Mutant Length		3e-06
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		4e-06
4gdh_A	194	Schizosaccharomyces Pombe Dj-1 Length = 194		5e-06
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		6e-06
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		8e-06
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		9e-06
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		6e-04

>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 9/201 (4%)
Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           +LVPV  G+EE E VIIVD L RAG QVT A+V  +L+V+ S G  L A+ ++  CS + 
Sbjct: 12  ILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAEA 71
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           FD +ALPGG+ G+    D   L  +    +++ +L  AICA PA+           + TC
Sbjct: 72  FDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXTC 131
Query: 140 HPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLL 197
           HP F D +P+    +  +  + +  + TS+GPGT+ EFAL  +  L G  +A+ +    +
Sbjct: 132 HPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXV 191
Query: 198 MHNADNSLKKEEFNEVEWFFD 218
           +H        ++  E+  F D
Sbjct: 192 LH-------PQQLTELSGFID 205

>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 281
           R+L+P+A+GSEE E V IVD L RA   V  A+V    Q+  S+GV + A++++   +  
Sbjct: 11  RILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAE 70
Query: 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXX 340
            +D + LPGGV GA+    S  L  L+      G++  A+C++P +V             
Sbjct: 71  AFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXT 130
Query: 341 XXPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANVIDF 377
             P+    + +E ++  +V       ++TS+G    ++F
Sbjct: 131 CHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169

>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 9/201 (4%)
Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           +LVPV  G+EE E VIIVD L RAG QVT A+V  +L+V+ S G  L A+ ++  CS + 
Sbjct: 12  ILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAEA 71
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           FD +ALPGG+ G+    D   L  +    +++ +L  AI A PA+           + TC
Sbjct: 72  FDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXTC 131
Query: 140 HPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLL 197
           HP F D +P+    +  +  + +  + TS+GPGT+ EFAL  +  L G  +A+ +    +
Sbjct: 132 HPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXV 191
Query: 198 MHNADNSLKKEEFNEVEWFFD 218
           +H        ++  E+  F D
Sbjct: 192 LH-------PQQLTELSGFID 205

>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 281
           R+L+P+A+GSEE E V IVD L RA   V  A+V    Q+  S+GV + A++++   +  
Sbjct: 11  RILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAE 70
Query: 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXX 340
            +D + LPGGV GA+    S  L  L+      G++  A+ ++P +V             
Sbjct: 71  AFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXT 130
Query: 341 XXPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANVIDF 377
             P+    + +E ++  +V       ++TS+G    ++F
Sbjct: 131 CHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 107/187 (57%), Gaps = 7/187 (3%)
Query: 17  ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCS 76
           AL +L P   G EEME +I  DVLRRAG +VT+A +     V+ S   +++ DTS++  +
Sbjct: 8   ALVILAP---GAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVA 64
Query: 77  HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 136
              FD++ LPGG+ GS  + +  ++  +   Q     L  AICAAP V L   G+   K 
Sbjct: 65  SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTV-LAKHGVASGKS 123
Query: 137 ITCHPAFTDKLPTFWAVKSNIHV--SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGE 194
           +T +P+   +L   ++   +  V   G + TSRGPGT++EFAL + E+L G+   +E+ +
Sbjct: 124 LTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAK 183
Query: 195 -LLLMHN 200
            LL+ +N
Sbjct: 184 GLLVAYN 190

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 2/181 (1%)
Query: 224 LIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVY 283
           L+ +A G+EE+E +   D+LRRA + V VA +     +  S+ V+I+ D S++  A   +
Sbjct: 9   LVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKF 68
Query: 284 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXXXXP 343
           D+++LPGG+ G+  + +S ++  LL+ Q+  G +  A+C++P V               P
Sbjct: 69  DVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYP 128
Query: 344 SVIGKLTNE--VVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE 401
           S+  +L N    V+   VV DG +ITSRG     +FAL I  +  G  + + VA+GL+  
Sbjct: 129 SMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVA 188
Query: 402 Y 402
           Y
Sbjct: 189 Y 189

>pdb|3B36|A Chain A, Structure Of M26l Dj-1 Length = 192

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDVLRRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 10  LVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 69
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 70  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 128
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 129 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 188
Query: 197 LMHN 200
           ++ +
Sbjct: 189 VLKD 192

>pdb|3B36|A Chain A, Structure Of M26l Dj-1 Length = 192

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE+E V  VD+LRRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 8   RALVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 68  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 127
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 128 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 187
Query: 398 LVFE 401
           LV +
Sbjct: 188 LVLK 191

>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson's Disease Length = 189

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson's Disease Length = 189

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1 Length = 197

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1 Length = 197

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1 Length = 189

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGCGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1 Length = 189

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGCGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|2RK4|A Chain A, Structure Of M26i Dj-1 Length = 197

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|2RK4|A Chain A, Structure Of M26i Dj-1 Length = 197

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification Length = 187

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 5/182 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 6   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 65
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 66  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 124
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 125 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 184
Query: 197 LM 198
           ++
Sbjct: 185 VL 186

>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification Length = 187

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 4   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 63
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 64  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 123
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 124 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 183
Query: 398 LVFE 401
           LV +
Sbjct: 184 LVLK 187

>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1 Length = 197

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEM+ VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1 Length = 197

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE++ V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1 Length = 197

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEM+ VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1 Length = 197

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE++ V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|2RK3|A Chain A, Structure Of A104t Dj-1 Length = 197

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L   ICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|2RK3|A Chain A, Structure Of A104t Dj-1 Length = 197

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +   +C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1 Length = 192

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 10  LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 69
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 70  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 128
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSF+FAL +VE L G+ VA ++   L
Sbjct: 129 HPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPL 188
Query: 197 LMHN 200
           ++ +
Sbjct: 189 VLKD 192

>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1 Length = 192

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 8   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 68  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 127
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG      FALAIV    G      V   
Sbjct: 128 THPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAP 187
Query: 398 LVFE 401
           LV +
Sbjct: 188 LVLK 191

>pdb|3B38|A Chain A, Structure Of A104v Dj-1 Length = 192

Iteration: 1
 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 10  LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 69
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L   ICA P   LL   +    ++T 
Sbjct: 70  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGP-TALLAHEIGFGSKVTT 128
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 129 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 188
Query: 197 LMHN 200
           ++ +
Sbjct: 189 VLKD 192

>pdb|3B38|A Chain A, Structure Of A104v Dj-1 Length = 192

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 8   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +   +C+ P               
Sbjct: 68  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLAHEIGFGSKVT 127
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 128 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 187
Query: 398 LVFE 401
           LV +
Sbjct: 188 LVLK 191

>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1 Length = 197

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEM  VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1 Length = 197

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE+  V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 5/182 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 6   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAKKEGP 65
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    ++T 
Sbjct: 66  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP-TALLAHEIGFGSKVTT 124
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 125 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 184
Query: 197 LM 198
           ++
Sbjct: 185 VL 186

>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 4   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAKKE 63
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 64  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVT 123
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 124 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 183
Query: 398 LVFE 401
           LV +
Sbjct: 184 LVLK 187

>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 5/182 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 6   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 65
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    ++T 
Sbjct: 66  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP-TALLAHEIGFGSKVTT 124
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 125 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 184
Query: 197 LM 198
           ++
Sbjct: 185 VL 186

>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 4   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 63
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 64  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVT 123
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 124 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 183
Query: 398 LVFE 401
           LV +
Sbjct: 184 LVLK 187

>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid Length = 189

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid Length = 189

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group Length = 197

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EE E VI VDV RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK      +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group Length = 197

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE E V  VD+ RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K  N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1 Length = 189

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EE E VI VDV RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK      +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1 Length = 189

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 280
           R L+ +A G+EE E V  VD+ RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K  N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 4/184 (2%)
Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASV--EPQLEVEASSGTRLVADTSISNCS 76
           + LV +  G+EE EAV  +D+L R G +VT ASV  +  L +  S G +L+AD  +   +
Sbjct: 4   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVA 63
Query: 77  HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 136
              +D+I LPGG+ G+   RD  +L +   +     R+  AICAAPA  L+P  +     
Sbjct: 64  DGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGN 123
Query: 137 ITCHPAFTDKLPTFWAVKSNIHVSGEVT--TSRGPGTSFEFALCLVEQLFGESVAKEIGE 194
           +T  P   DK+P    +   +     V   TS+GPGT+ +F L +++ L G   A E+  
Sbjct: 124 MTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVAS 183
Query: 195 LLLM 198
            L+M
Sbjct: 184 QLVM 187

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 224 LIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSISDAAES 281
           L+ +A GSEE E VT +D+L R  + V  ASV  + +  I  S+GVK++AD  + + A+ 
Sbjct: 6   LVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADG 65
Query: 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXX 340
            YD+I+LPGG+ GAE  + S +L + +K+   +GRI  A+C++P  V             
Sbjct: 66  EYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMT 125
Query: 341 XXPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANVIDFALAIVSKFFGHARTRSVAEGL 398
             P++  K+  E     +VV D +V  +TS+G    IDF L I+    G  +   VA  L
Sbjct: 126 GFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQL 185
Query: 399 VF 400
           V 
Sbjct: 186 VM 187

>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEM+ VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHNADN 203
           ++ + ++
Sbjct: 186 VLKDLEH 192

>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE++ V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFG 387
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNG 174

>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEM+ VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHNADN 203
           ++ + ++
Sbjct: 186 VLKDLEH 192

>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE++ V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFG 387
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNG 174

>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1 Length = 197

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEM  VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 7   LVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 66
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    ++T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSKVTT 125
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   L
Sbjct: 126 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL 185
Query: 197 LMHN 200
           ++ +
Sbjct: 186 VLKD 189

>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1 Length = 197

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE+  V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 5   RALVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 65  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 398 LVFE 401
           LV +
Sbjct: 185 LVLK 188

>pdb|2RK6|A Chain A, Structure Of E163k Dj-1 Length = 192

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 21  LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-V 79
           LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +   +  
Sbjct: 10  LVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGP 69
Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           +D++ LPGG  G+  L +   +K+I  +Q   K L  AI A P   LL   +    ++T 
Sbjct: 70  YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSKVTT 128
Query: 140 HPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
           HP   DK+     +   ++ +   G + TSRGPGTSF+FAL +VE L G+ VA ++   L
Sbjct: 129 HPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPL 188
Query: 197 LMHN 200
           ++ +
Sbjct: 189 VLKD 192

>pdb|2RK6|A Chain A, Structure Of E163k Dj-1 Length = 192

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 4/184 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 8   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+ + P               
Sbjct: 68  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 127
Query: 341 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
             P    K+ N      +  +V  DG ++TSRG      FALAIV    G      V   
Sbjct: 128 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAP 187
Query: 398 LVFE 401
           LV +
Sbjct: 188 LVLK 191

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 46  QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 105
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 106 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 163
            +QA   R   ++C+  ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 91  RQQAARARYVTSVCSG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 164 TTSRGPGTSFEFALCLVEQLFGESVAKEI 192
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant Length = 194

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSI- 275
            M +V + +A+G++EIE      I +RA++  D V     +   +  S+ V++ A++S  
Sbjct: 3   HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYK 62
Query: 276 ----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKE-QKVAGRIYGAVCSSPIVXXX 330
               +D     YD+ I+PGG  GA+ L  +  +++++KE  K   +  G + + P+    
Sbjct: 63  EIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGPLT-AK 121
Query: 331 XXXXXXXXXXXXPSVIGKLTNEVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKF 385
                       PSV G+L      G K     VV++  +ITS+G    + F L ++ + 
Sbjct: 122 TSGLPNKQITGHPSVRGQLEE---GGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQV 178
Query: 386 FGHARTRSVAEGL 398
               +  +V + L
Sbjct: 179 ASKDKYNAVYKSL 191

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 46  QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 105
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 106 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 163
            +QA   R   ++C   ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 91  RQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 164 TTSRGPGTSFEFALCLVEQLFGESVAKEI 192
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant Length = 194

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSI- 275
            M +V + +A+G++EIE      I +RA++  D V     +   +  S+ V++ A++S  
Sbjct: 3   HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYK 62
Query: 276 ----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXX 331
               +D     YD+ I+PGG  GA+ L  +  +++++KE       +  +  + ++    
Sbjct: 63  EIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGVLTAKT 122
Query: 332 XXXXXXXXXXXPSVIGKLTNEVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKFF 386
                      PSV G+L      G K     VV++  +ITS+G    + F L ++ +  
Sbjct: 123 SGLPNKQITGHPSVRGQLEE---GGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVA 179
Query: 387 GHARTRSVAEGL 398
              +  +V + L
Sbjct: 180 SKDKYNAVYKSL 191

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 46  QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 105
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFIR 91
Query: 106 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 163
            + A  +  Y    A  ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 92  QQAARAR--YVTSVATGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 164 TTSRGPGTSFEFALCLVEQLFGESVAKEI 192
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1 Length = 194

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 15/192 (7%)
Query: 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSI- 275
            M +V + +A+G++EIE      I +RA++  D V     +   +  S+ V++ A++S  
Sbjct: 3   HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYK 62
Query: 276 ----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXX 331
               +D     YD+ I+PGG  GA+ L  +  +++++KE       +  +  +  +    
Sbjct: 63  EIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGTLTAKT 122
Query: 332 XXXXXXXXXXXPSVIGKLTNEVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKFF 386
                      PSV G+L      G K     VV++  +ITS+G    + F L ++ +  
Sbjct: 123 SGLPNKQITGHPSVRGQLEE---GGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVA 179
Query: 387 GHARTRSVAEGL 398
              +  +V + L
Sbjct: 180 SKDKYNAVYKSL 191

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 29  EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 88
           E++E +     L+  G +V +AS E +  +    G  +  D +    + + FD + LPGG
Sbjct: 12  EDVELIYPYHRLKEEGHEVYIASFE-RGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGG 70
Query: 89  -MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKL 147
             P  VRL +  +   I  K   E +   +IC  P + L+  G+LR ++ T +P   D  
Sbjct: 71  RAPERVRLNEKAV--SIARKXFSEGKPVASICHGPQI-LISAGVLRGRKGTSYPGIKDDX 127
Query: 148 PTF---WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
                 W V + + V G   +SR P   + +    V+ L
Sbjct: 128 INAGVEW-VDAEVVVDGNWVSSRVPADLYAWXREFVKLL 165

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 46  QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 105
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 106 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 163
            +QA   R   ++    ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 91  RQQAARARYVTSVSTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 164 TTSRGPGTSFEFALCLVEQLFGESVAKEI 192
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 46  QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 105
           QV +   EP   V ASSG  L A TS ++C     D+I +PGG      + D + L  I 
Sbjct: 35  QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 106 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 163
            +QA   R   ++    ++ L   GLL+ K+ T H A+ + L    A+  +  V   G +
Sbjct: 91  RQQAARARYVTSVXTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 164 TTSRGPGTSFEFALCLVEQLFGESVAKEI 192
            T  G     +FAL L  +LF  + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 4/167 (2%)
Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDAAE 280
           +V I I    E+ E +   + L++A  +VVV     + +    +G +   AD + ++A  
Sbjct: 12  KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRXNEKYKGKRGRLSTQADGTTTEAIA 71
Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 340
           S +D +++PGG A  ++ +++    + ++E    G++  AV   P V             
Sbjct: 72  SEFDAVVIPGGXA-PDKXRRNPNTVRFVQEAXEQGKLVAAVXHGPQVLIEGDLLRGKQAT 130
Query: 341 XXPSVIGKLTNEVVN--GTKVVVDGKVITSRGLANVIDFALAIVSKF 385
              ++     N   +     +VVDG +ITSR   ++  F  AI+S+ 
Sbjct: 131 GFIAISKDXXNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRL 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	3e-75
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	1e-68
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	1e-73
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	3e-67
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	9e-73
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	5e-70
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	8e-70
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	3e-69
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	3e-66
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	3e-31
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	4e-22
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	2e-65
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	4e-59
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	5e-62
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	2e-49
2fex_A	188	Conserved hypothetical protein; structural genomic	1e-56
2fex_A	188	Conserved hypothetical protein; structural genomic	7e-42
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	3e-54
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	2e-47
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	9e-51
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	3e-36
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	4e-48
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	2e-35
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	2e-46
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	7e-39
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	2e-39
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	5e-31
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	9e-39
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	3e-30
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	3e-34
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	3e-25
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	1e-23
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	7e-12
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	2e-23
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	1e-17
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	3e-23
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	5e-14
3gra_A	202	Transcriptional regulator, ARAC family; transcript	5e-18
3er6_A	209	Putative transcriptional regulator protein; struct	4e-16
3er6_A	209	Putative transcriptional regulator protein; struct	2e-04
1u9c_A	224	APC35852; structural genomics, protein structure i	2e-09
1u9c_A	224	APC35852; structural genomics, protein structure i	1e-07
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	4e-09
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	7e-08
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	3e-08
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	9e-07
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	2e-06
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	4e-06
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	3e-05
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	1e-04
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	3e-04
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	4e-04
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	8e-04

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  231 bits (591), Expect = 3e-75
 Identities = 65/183 (35%), Positives = 108/183 (59%), Gaps = 2/183 (1%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 281
             L+ +A G+EE+E +   D+LRRA + V VA +     +  S+ V+I+ D S++  A  
Sbjct: 7   SALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASD 66

Query: 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA 341
            +D+++LPGG+ G+  + +S ++  LL+ Q+  G +  A+C++P VL KHG+   K  T+
Sbjct: 67  KFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTS 126

Query: 342 HPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLV 399
           +PS+  +L N    V+   VV DG +ITSRG     +FAL I  +  G  + + VA+GL+
Sbjct: 127 YPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLL 186

Query: 400 FEY 402
             Y
Sbjct: 187 VAY 189

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  214 bits (547), Expect = 1e-68
 Identities = 65/184 (35%), Positives = 104/184 (56%), Gaps = 4/184 (2%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
            LV +  G EEME +I  DVLRRAG +VT+A +     V+ S   +++ DTS++  +   
Sbjct: 8   ALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDK 67

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           FD++ LPGG+ GS  + +  ++  +   Q     L  AICAAP V L   G+   K +T 
Sbjct: 68  FDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTV-LAKHGVASGKSLTS 126

Query: 140 HPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGE-LL 196
           +P+   +L   ++      +   G + TSRGPGT++EFAL + E+L G+   +E+ + LL
Sbjct: 127 YPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLL 186

Query: 197 LMHN 200
           + +N
Sbjct: 187 VAYN 190

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  227 bits (581), Expect = 1e-73
 Identities = 66/187 (35%), Positives = 97/187 (51%), Gaps = 4/187 (2%)

Query: 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA- 278
             R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62

Query: 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 338
            E  YD+++LPGG  GA+ L +S  +K++LKEQ+    +   +C+ P  L  H +    K
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSK 122

Query: 339 ATAHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVA 395
            T HP    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V 
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182

Query: 396 EGLVFEY 402
             LV + 
Sbjct: 183 APLVLKD 189

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  211 bits (539), Expect = 3e-67
 Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 5/191 (2%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC-SHQ 78
            LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +     
Sbjct: 6   ALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEG 65

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
            +D++ LPGG  G+  L +   +K+I  +Q   K L   ICA P   LL   +    ++T
Sbjct: 66  PYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTA-LLAHEIGFGSKVT 124

Query: 139 CHPAFTDKLP---TFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 195
            HP   DK+     +   ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184

Query: 196 LLMHNADNSLK 206
           L++ + ++   
Sbjct: 185 LVLKDLEHHHH 195

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  225 bits (576), Expect = 9e-73
 Identities = 70/182 (38%), Positives = 107/182 (58%), Gaps = 2/182 (1%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           +LVPV  G+EEME VIIVD L RAG QVTMA+V  +L+V+ S G  L A+ ++  CS + 
Sbjct: 12  ILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEA 71

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           FD +ALPGG+ G+    D   L  +    +++ +L  AICA PA+           ++TC
Sbjct: 72  FDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTC 131

Query: 140 HPAFTDKLPTFWAVKSN--IHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLL 197
           HP F D +P+    +     + +  + TS+GPGT+ EFAL ++  L G  +A+ +   ++
Sbjct: 132 HPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMV 191

Query: 198 MH 199
           +H
Sbjct: 192 LH 193

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  218 bits (558), Expect = 5e-70
 Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 3/182 (1%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 281
           R+L+P+A+GSEE+E V IVD L RA   V +A+V    Q+  S+GV + A++++   +  
Sbjct: 11  RILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAE 70

Query: 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKAT 340
            +D + LPGGV GA+    S  L  L+      G++  A+C++P +V  K       + T
Sbjct: 71  AFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMT 130

Query: 341 AHPSVIGKLTNEVVNGTK--VVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGL 398
            HP+    + +E ++  +        ++TS+G    ++FALA+++   G    + VA  +
Sbjct: 131 CHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPM 190

Query: 399 VF 400
           V 
Sbjct: 191 VL 192

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  217 bits (556), Expect = 8e-70
 Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 11/203 (5%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNCSH 77
            LV +  G+EE EAV  +D+L R G +VT ASV     L +  S G +L+AD  +   + 
Sbjct: 5   ALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVAD 64

Query: 78  QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 137
             +D+I LPGG+ G+   RD  +L +   +     R+  AICAAPA  L+P  +     +
Sbjct: 65  GEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNM 124

Query: 138 TCHPAFTDKLPTFWAVKSNIHVSGEVT--TSRGPGTSFEFALCLVEQLFGESVAKEIGEL 195
           T  P   DK+P    +   +     V   TS+GPGT+ +F L +++ L G   A E+   
Sbjct: 125 TGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQ 184

Query: 196 LLMHNADNSLKKEEFNEVEWFFD 218
           L+M           +N  E    
Sbjct: 185 LVMAAG-------IYNYYEQLEH 200

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  216 bits (552), Expect = 3e-69
 Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 5/185 (2%)

Query: 221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE--RSTQIVASQGVKIIADKSISDA 278
              L+ +A GSEE E VT +D+L R  + V  ASV    +  I  S+GVK++AD  + + 
Sbjct: 3   ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEV 62

Query: 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAK 337
           A+  YD+I+LPGG+ GAE  + S +L + +K+   +GRI  A+C++P  VL  H +    
Sbjct: 63  ADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIG 122

Query: 338 KATAHPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANVIDFALAIVSKFFGHARTRSVA 395
             T  P++  K+  E     +VV D +V  +TS+G    IDF L I+    G  +   VA
Sbjct: 123 NMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVA 182

Query: 396 EGLVF 400
             LV 
Sbjct: 183 SQLVM 187

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  214 bits (548), Expect = 3e-66
 Identities = 61/410 (14%), Positives = 122/410 (29%), Gaps = 78/410 (19%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ---------------LEVEASSGT 64
           VL+  G   E+ E ++    L+  G  V       +                    S G 
Sbjct: 15  VLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGH 74

Query: 65  RLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV 124
               + +        +D + +PGG      L     + ++  + +   +   +IC    +
Sbjct: 75  NFTLNATFDEVDLSKYDGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICHGQLI 133

Query: 125 TLLPWGLLRRKQITCHPAFTDKLPT---FW---AVKSNIHVSGEVTTSRGPGTSFEFALC 178
            L     +  ++ T +      L      W          V G + T+       EF   
Sbjct: 134 -LAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFI-- 190

Query: 179 LVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVT 238
                      +   + L                         R+L    +  E+ E+  
Sbjct: 191 -----------QLFVKALGGKITGA----------------NKRILFLCGDYMEDYEVKV 223

Query: 239 IVDILRRAKVDVVVASVERSTQIVAS---------------QGVKIIADKSISDAAESVY 283
               L+     V     E+                       G       +  D   S Y
Sbjct: 224 PFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSY 283

Query: 284 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHP 343
           D +++PGG A  E L  +  +  ++KE   + +   ++C    +L   G+LK +K TA+P
Sbjct: 284 DALVIPGGRA-PEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYP 342

Query: 344 SVIGKLTN--------EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 385
           +V   +          + ++  +   DG ++T        +F   +++  
Sbjct: 343 AVKLNVVLGGGTWLEPDPID--RCFTDGNLVTGAAWPGHPEFVSQLMALL 390

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  122 bits (307), Expect = 3e-31
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 22/185 (11%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER---------------STQIVASQG 266
            VLI   +  E+ E++     L+   + V      +                     S+G
Sbjct: 14  TVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRG 73

Query: 267 VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326
                + +  +   S YD +++PGG A  E L  +  + +L+KE   +G+   ++C   +
Sbjct: 74  HNFTLNATFDEVDLSKYDGLVIPGGRA-PEYLALTASVVELVKEFSRSGKPIASICHGQL 132

Query: 327 VLHKHGLLKAKKATAHPSVIGKLTN------EVVNGTKVVVDGKVITSRGLANVIDFALA 380
           +L     +  +K TA+ +V   L        E +     VVDG +IT+       +F   
Sbjct: 133 ILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQL 192

Query: 381 IVSKF 385
            V   
Sbjct: 193 FVKAL 197

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 96.4 bits (240), Expect = 4e-22
 Identities = 32/186 (17%), Positives = 57/186 (30%), Gaps = 23/186 (12%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS---------------G 63
            +L   G   E+ E  +    L+  G QV     E +      +               G
Sbjct: 207 RILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPG 266

Query: 64  TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPA 123
                 T+  +     +D + +PGG      L   E +  I  +    ++   +IC    
Sbjct: 267 HTFALTTNFDDLVSSSYDALVIPGGR-APEYLALNEHVLNIVKEFMNSEKPVASICHGQQ 325

Query: 124 VTLLPWGLLRRKQITCHPAFTDKLPTFWA------VKSNIHVSGEVTTSRGPGTSFEFAL 177
           + L   G+L+ ++ T +PA    +                   G + T        EF  
Sbjct: 326 I-LAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVS 384

Query: 178 CLVEQL 183
            L+  L
Sbjct: 385 QLMALL 390

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  206 bits (526), Expect = 2e-65
 Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 11/191 (5%)

Query: 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSIS- 276
           M +V + +A+G++EIE      I +RA++ +    V   +   +  S+ V++ A++S   
Sbjct: 4   MVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKE 63

Query: 277 ----DAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ-KVAGRIYGAVCSSPIVLHKH 331
               D     YD+ I+PGG  GA+ L  +  +++++KE  K   +  G +C+  +     
Sbjct: 64  IPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTAK-T 122

Query: 332 GLLKAKKATAHPSVIGKLTNE--VVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHA 389
             L  K+ T HPSV G+L           VV++  +ITS+G    + F L ++ +     
Sbjct: 123 SGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKD 182

Query: 390 RTRSVAEGLVF 400
           +  +V + L  
Sbjct: 183 KYNAVYKSLSM 193

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  190 bits (484), Expect = 4e-59
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 12/189 (6%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISN--- 74
           V + V  GT+E+E      + +RA   +    V       V+ S    + A+ S      
Sbjct: 7   VCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPS 66

Query: 75  --CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEE-KRLYGAICAAPAVTLLPWGL 131
                + +D+  +PGG  G+  L     ++++  +  ++  +  G ICA           
Sbjct: 67  ADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT--LTAKTSG 124

Query: 132 LRRKQITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVA 189
           L  KQIT HP+   +L       +   + +   + TS+GPGT+  F L L+EQ+  +   
Sbjct: 125 LPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKY 184

Query: 190 KEIGELLLM 198
             + + L M
Sbjct: 185 NAVYKSLSM 193

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  199 bits (507), Expect = 5e-62
 Identities = 38/199 (19%), Positives = 83/199 (41%), Gaps = 5/199 (2%)

Query: 203 NSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV 262
           +       +    +F  M +V I + +   +++   + D+L R      V  +    +  
Sbjct: 3   SDKIHHHHHHENLYFQGMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHH 62

Query: 263 ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVC 322
           +  G+ +  D  +S+  E   D++++  G  G     +       LK    + ++ G++C
Sbjct: 63  SQLGMTVKTDGHVSEVKE--QDVVLITSGYRGIPAALQDENFMSALKLDP-SRQLIGSIC 119

Query: 323 SSPIVLHKHGLLKAKKATAHPSVIGKLTNE--VVNGTKVVVDGKVITSRGLANVIDFALA 380
           +   VLH+ GLLK KK T +P     L      V    +V++G + T+ G  +++     
Sbjct: 120 AGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLSLLYLVGW 179

Query: 381 IVSKFFGHARTRSVAEGLV 399
           +  + F   + + +   L+
Sbjct: 180 LAERLFDSVKRKQIQNQLI 198

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  165 bits (421), Expect = 2e-49
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 6/181 (3%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 78
            V + +     +++  ++ D+L R     T+  +  + E  +  G  +  D  +S     
Sbjct: 22  KVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEVKE- 80

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
             D++ +  G  G       E       K    ++L G+ICA   V L   GLL+ K++T
Sbjct: 81  -QDVVLITSGYRGIPAALQDENFMSAL-KLDPSRQLIGSICAGSFV-LHELGLLKGKKLT 137

Query: 139 CHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
            +P     L           + + G + T+ G  +       L E+LF     K+I   L
Sbjct: 138 TNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSVKRKQIQNQL 197

Query: 197 L 197
           +
Sbjct: 198 I 198

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  183 bits (467), Expect = 1e-56
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 11/188 (5%)

Query: 220 MPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDA 278
           M R+ I +A    + E   +    R    V++V A+ +    + +  G+K+  D S    
Sbjct: 1   MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMP-VTSMGGLKVTPDTSYDAL 59

Query: 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 338
                D +++PGG++  +       L  L+K  +   R+   +C++   L   G+L    
Sbjct: 60  DPVDIDALVIPGGLSWEKGTAAD--LGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVA 117

Query: 339 ATAHPSVIGKLTNEVVNG------TKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTR 392
            T +     K               + V DG V+T+ G A  + FA+ I+          
Sbjct: 118 HTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA-PVSFAVEILKSLGLFGPEA 176

Query: 393 SVAEGLVF 400
                +  
Sbjct: 177 EAELQIFA 184

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  144 bits (366), Expect = 7e-42
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 14/190 (7%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 77
            + + +     + E  ++    R   G ++  A+ +    V +  G ++  DTS      
Sbjct: 3   RIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDP 61

Query: 78  QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 137
              D + +PGG+           L  +  +  +  RL   ICAA +  L   G+L     
Sbjct: 62  VDIDALVIPGGLSWEKGTA--ADLGGLVKRFRDRDRLVAGICAAASA-LGGTGVLNDVAH 118

Query: 138 TCHPAFTDKLPT------FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL--FGESVA 189
           T +   + K          +  +      G V T+ G      FA+ +++ L  FG    
Sbjct: 119 TGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAE 177

Query: 190 KEIGELLLMH 199
            E+      H
Sbjct: 178 AELQIFAAEH 187

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  176 bits (449), Expect = 3e-54
 Identities = 28/170 (16%), Positives = 63/170 (37%), Gaps = 7/170 (4%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISD--AA 279
           +V +   N      +   ++      +   V +V  + +I  + G+ +I D  I++    
Sbjct: 4   KVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGH 63

Query: 280 ESVYDLIILPGGVA-----GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLL 334
           E  +D ++   G A            +  L +++K     G++    C+  ++    G+ 
Sbjct: 64  EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGIT 123

Query: 335 KAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSK 384
           K KK   HP     + N +    K  +DG   T++    +      ++  
Sbjct: 124 KGKKVAVHPLAKPAIQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEA 173

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  159 bits (404), Expect = 2e-47
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 8/171 (4%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           V V              ++     G    + +V    E++ +SG  L+ D  I+N     
Sbjct: 5   VAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHE 64

Query: 80  --FDLIALPGG-----MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 132
             FD +    G                 L ++     E+ ++    CA   +     G+ 
Sbjct: 65  DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMM-FDFTGIT 123

Query: 133 RRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
           + K++  HP     +    A      + G   T++   T +     ++E L
Sbjct: 124 KGKKVAVHPLAKPAIQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEAL 174

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  169 bits (429), Expect = 9e-51
 Identities = 36/180 (20%), Positives = 72/180 (40%), Gaps = 18/180 (10%)

Query: 220 MPRVLIPIANGSEEIEIVTIVDILRR--------AKVDVVVASVERSTQIVASQGVKIIA 271
             +  + + N   + E   ++  L          A + V+     +   I    G++I  
Sbjct: 5   TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEM-ITTMGGLRIKP 63

Query: 272 DKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 331
           D S+ +      DL+ILPGG   +E + +   + + + +    G I  A+C +   L   
Sbjct: 64  DISLDECTLESKDLLILPGGTTWSEEIHQP--ILERIGQALKIGTIVAAICGATDALANM 121

Query: 332 GLLKAKKATAHPSVIGKLTNE------VVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 385
           G L  +K T++     K+                V D  ++T+ G+A  ++FA+ ++ K 
Sbjct: 122 GYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFAMEVLKKI 180

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  130 bits (330), Expect = 3e-36
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 23/215 (10%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVLRR--------AGAQVTMASVEPQLEVEASSGTRLVADT 70
              + V     + E   ++  L          A  +V       +  +    G R+  D 
Sbjct: 7   KAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPDI 65

Query: 71  SISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 130
           S+  C+ +  DL+ LPGG   S  +   + + +   +  +   +  AIC A    L   G
Sbjct: 66  SLDECTLESKDLLILPGGTTWSEEIH--QPILERIGQALKIGTIVAAICGATDA-LANMG 122

Query: 131 LLRRKQITCHPAFTDKL------PTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLF 184
            L  ++ T +     K+         +           + T+ G     EFA+ +++++ 
Sbjct: 123 YLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFAMEVLKKID 181

Query: 185 GESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDR 219
             ++        L          E F ++    ++
Sbjct: 182 VFTLDALHSWYNLNKTHKP----EYFFQLMNSINK 212

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  161 bits (410), Expect = 4e-48
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 14/187 (7%)

Query: 220 MPRVLIPIANGSEEIEIVTIVDIL-RRAKVDVVVASVERSTQIVASQGVKIIADKSISDA 278
           + + L  I +   + E V +   L +R    V   S++    + +  G K   D  I   
Sbjct: 3   LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLE 60

Query: 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 338
             + ++L+++ GG + +   +K   L   +K          A+C +   L K+GLL    
Sbjct: 61  PAN-FNLLVMIGGDSWSNDNKK---LLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHS 116

Query: 339 ATAHPSVIGKL-----TNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRS 393
            T +   + K              + V D  ++T+ G A  I+F   I+ +        +
Sbjct: 117 HTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTAP-IEFTNLIL-EMIDFDTPEN 174

Query: 394 VAEGLVF 400
           + + +  
Sbjct: 175 IEKMMYM 181

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  128 bits (323), Expect = 2e-35
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 15/187 (8%)

Query: 19  NVLVPVGFGTEEMEAVIIVDVL-RRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 77
             L  +     + E V +   L +R    V   S++P   V +  G +   D  I     
Sbjct: 5   KALFLILDQYADWEGVYLASALNQREDWSVHTVSLDP--IVSSIGGFKTSVDYIIGLEPA 62

Query: 78  QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 137
             F+L+ + GG   S    D + L        ++     AIC A    L   GLL     
Sbjct: 63  N-FNLLVMIGGDSWS---NDNKKLLHFVKTAFQKNIPIAAICGAVDF-LAKNGLLNNHSH 117

Query: 138 TCHPAFTDKL-----PTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 192
           T +  +  K      P    V+        + T+ G     EF   ++E +  ++  + I
Sbjct: 118 TGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA-PIEFTNLILEMIDFDT-PENI 175

Query: 193 GELLLMH 199
            +++ M+
Sbjct: 176 EKMMYMN 182

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  162 bits (412), Expect = 2e-46
 Identities = 46/186 (24%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDAAE 280
           +V I I    E+ E +   + L++A  +VVV     + +    +G +   AD + ++A  
Sbjct: 12  KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIA 71

Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 340
           S +D +++PGG+A  ++++++    + ++E    G++  AVC  P VL +  LL+ K+AT
Sbjct: 72  SEFDAVVIPGGMA-PDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQAT 130

Query: 341 AHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
              ++   + N   + ++   +VVDG +ITSR   ++  F  AI+S+     +  ++ + 
Sbjct: 131 GFIAISKDMMNAGADYLD-EALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAALPDE 189

Query: 398 LVFEYP 403
                 
Sbjct: 190 KDRNAE 195

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  142 bits (359), Expect = 7e-39
 Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 11/208 (5%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT-RLVADTSISNCSHQ 78
           V + +    E+ E +I  + L++AG +V +       + +   G     AD + +     
Sbjct: 13  VAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIAS 72

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
            FD + +PGGM    ++R      +   +  E+ +L  A+C  P V L+   LLR KQ T
Sbjct: 73  EFDAVVIPGGM-APDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQV-LIEGDLLRGKQAT 130

Query: 139 CHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
              A +  +    A  +   + V G + TSR PG    F   ++ +L        + +  
Sbjct: 131 GFIAISKDMMNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAALPDEK 190

Query: 197 LMHNADNSLKKEEFNEVEWFFDRMPRVL 224
                D + +  +  +  W       ++
Sbjct: 191 -----DRNAEWWKLAD-AWGGSTKGDIV 212

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  138 bits (351), Expect = 2e-39
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 10/172 (5%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-----VKIIADKSIS 276
           ++ I  A+G EEIE+ +    +  A     + S+E    I + +G      K   D  +S
Sbjct: 11  KIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGE-IQSMKGDIEPQEKYRVDHVVS 69

Query: 277 DAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA 336
           +   S YD ++LPGG    ++L+      K +++   AG+   A+C  P  L + G+ + 
Sbjct: 70  EVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQG 129

Query: 337 KKATAHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 385
            K T+  S+  +LT    + V+  + V D  V+TSR   ++  F   IV +F
Sbjct: 130 LKMTSWSSLKRELTLAGAQWVD-EECVTDKGVVTSRKPDDLPAFNKKIVEEF 180

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  116 bits (292), Expect = 5e-31
 Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 9/180 (5%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT-----RLVADTSISN 74
           + +    G EE+E       +  AG    + S+EP  E+++  G      +   D  +S 
Sbjct: 12  IAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSE 70

Query: 75  CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 134
                +D + LPGG     +LR  E   K      +  +   AIC  P   L   G+ + 
Sbjct: 71  VQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWS-LSETGIAQG 129

Query: 135 KQITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 192
            ++T   +   +L    A  V         V TSR P     F   +VE+      +   
Sbjct: 130 LKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSRR 189

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  136 bits (344), Expect = 9e-39
 Identities = 37/167 (22%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 281
           +VL   A+G E++E++  +  ++    +V VAS +R   I    G  +  D +  +    
Sbjct: 4   KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGK-ITGKHGYSVNVDLTFEEVDPD 62

Query: 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA 341
            +D ++LPGG A  E ++ +     + +      +   ++C  P +L    +LK ++ T+
Sbjct: 63  EFDALVLPGGKA-PEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTS 121

Query: 342 HPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 385
             ++   + N   E ++  +VVVDG  ++SR   ++  +    V   
Sbjct: 122 TITIRDDVINAGAEWID-AEVVVDGNWVSSRHPGDLYAWMREFVKLL 167

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  113 bits (285), Expect = 3e-30
 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 5/166 (3%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           VL     G E++E +  +  ++  G +V +AS +   ++    G  +  D +        
Sbjct: 5   VLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDE 63

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
           FD + LPGG      +R  E    IT +  E+ +   +IC  P + L+   +L+ ++ T 
Sbjct: 64  FDALVLPGGK-APEIVRLNEKAVMITRRMFEDDKPVASICHGPQI-LISAKVLKGRRGTS 121

Query: 140 HPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
                D +    A  + + + V G   +SR PG  + +    V+ L
Sbjct: 122 TITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLL 167

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  125 bits (315), Expect = 3e-34
 Identities = 35/172 (20%), Positives = 75/172 (43%), Gaps = 5/172 (2%)

Query: 220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDA 278
             ++ + I +  E+ E  +  D  R+A  +V+    +    +   +G   +  DKSI + 
Sbjct: 23  SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEV 82

Query: 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 338
             + +D ++LPGG +  + L+         ++   +G+   A+C  P +L    +++ +K
Sbjct: 83  TPAEFDALLLPGGHS-PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRK 141

Query: 339 ATAHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFG 387
            TA   +I  + N   E  +   VV   +++TSR   ++  F    +     
Sbjct: 142 LTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA 193

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  100 bits (252), Expect = 3e-25
 Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 6/170 (3%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLV-ADTSISNCSHQ 78
           + V +    E+ E     D  R+AG +V     +    V+   G   V  D SI   +  
Sbjct: 26  IAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPA 85

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
            FD + LPGG      LR        T       +   AIC  P + L+   ++R +++T
Sbjct: 86  EFDALLLPGGH-SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQL-LISADVIRGRKLT 143

Query: 139 CHPAFTDKLPTFWA--VKSNIHV-SGEVTTSRGPGTSFEFALCLVEQLFG 185
                   +    A      + V   ++ TSR P     F    +  L  
Sbjct: 144 AVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA 193

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 96.8 bits (242), Expect = 1e-23
 Identities = 35/193 (18%), Positives = 74/193 (38%), Gaps = 13/193 (6%)

Query: 220 MP-RVLIPIANGSEEIEIVTIVDILRRA--KVDVVVASVERSTQIVASQGVKIIADKSIS 276
           +  R+ + + N  E +++   V+I        ++   S +    + +SQ V++       
Sbjct: 3   LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGL-VESSQKVRVETSLYTR 61

Query: 277 DAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA 336
           D       ++ +PGG +G             +       +   +VC+   +L K G+L  
Sbjct: 62  DENI--EKILFVPGG-SGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNG 118

Query: 337 KKATAHPSVIGKLTN-----EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHART 391
           K+AT +      +T        V   + V DG + TS G++  ID  L  +    G  + 
Sbjct: 119 KRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKA 178

Query: 392 RSVAEGLVFEYPR 404
             ++  + + +  
Sbjct: 179 LEISRSIEY-FWN 190

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 63.3 bits (155), Expect = 7e-12
 Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 28/194 (14%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 77
           VL+   F  E ++    V++        ++   S +  L VE+S   R+       + + 
Sbjct: 9   VLLFNKF--ETLDVFGPVEIFGNLQDDFELNFISSDGGL-VESSQKVRVETSLYTRDENI 65

Query: 78  QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAIC-------AAPAVTLLPWG 130
               ++ +PGG  G+    + +          +E +   ++C        A        G
Sbjct: 66  --EKILFVPGG-SGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA--------G 114

Query: 131 LLRRKQITCHPAFTDKLPTFWA----VKSNIHV-SGEVTTSRGPGTSFEFALCLVEQLFG 185
           +L  K+ T +      +         VK    V  G + TS G     +  L  +E L G
Sbjct: 115 ILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIG 174

Query: 186 ESVAKEIGELLLMH 199
           +  A EI   +   
Sbjct: 175 KEKALEISRSIEYF 188

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 97.4 bits (243), Expect = 2e-23
 Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 5/183 (2%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAK-VDVVVASVERSTQIVASQGVKIIADKSISDAAE 280
           ++ + +  G   +++V    +        + + +      + +  G+ I+   +      
Sbjct: 25  QIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDP-VTSDAGLAIVPTATFGTCPR 83

Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 340
            +  ++  PGG  G             + ++    +   +VCS  ++L   GLLK  KAT
Sbjct: 84  DL-TVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKAT 142

Query: 341 AHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGL 398
           +H S    L     +    +VV D   IT  G+   +DF L++V++              
Sbjct: 143 SHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLMS 202

Query: 399 VFE 401
            ++
Sbjct: 203 EYD 205

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 27  GTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIAL 85
           G   M+ V    +     GA++ + +      V + +G  +V   +   C      ++  
Sbjct: 33  GMTVMDLVGPHCMFGSLMGAKIYIVAKSLDP-VTSDAGLAIVPTATFGTCPRD-LTVLFA 90

Query: 86  PGGMPGSVRLRDCEILKKITSKQAEEKRLYGAIC-------AAPAVTLLPWGLLRRKQIT 138
           PGG  G++            + +    +   ++C       AA        GLL+  + T
Sbjct: 91  PGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAA--------GLLKGYKAT 142

Query: 139 CHPAFTDKLPTFWAVKSN-IHV-SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
            H +  D L  F A+ +    V      T  G     +F L +V +L  ++ A+    + 
Sbjct: 143 SHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLMS 202

Query: 197 LMH 199
              
Sbjct: 203 EYD 205

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 96.1 bits (240), Expect = 3e-23
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 9/189 (4%)

Query: 220 MPR-VLIPIANGSEEIEIVTIVDILRRAK-VDVVVASVERSTQIVASQGVKIIADKSISD 277
           M   +   +    +++++    D+L     V V +   E    +VAS G+ + A  S +D
Sbjct: 4   MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGP-VVASSGLVLQATTSFAD 62

Query: 278 AAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK 337
                 D+I +PGG  G   L +       +++Q    R   +V +  +VL   GLL+ K
Sbjct: 63  CPP--LDVICIPGG-TGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGK 119

Query: 338 KATAHPSVIGKL--TNEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVA 395
           +AT H +    L     +    +VV DG ++T  G+   IDFAL + ++ F  A  + V 
Sbjct: 120 RATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQ 179

Query: 396 EGLVFEYPR 404
             L +  P 
Sbjct: 180 LQLEY-APA 187

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 69.9 bits (172), Expect = 5e-14
 Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 22/183 (12%)

Query: 27  GTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIAL 85
             ++++     DVL      QV +   EP   V ASSG  L A TS ++C     D+I +
Sbjct: 15  EVQQLDLTGPHDVLASLPDVQVHLIWKEPGP-VVASSGLVLQATTSFADCPP--LDVICI 71

Query: 86  PGGMPGSVRLRDCEILKKITSKQAEEKRLYGAIC-------AAPAVTLLPWGLLRRKQIT 138
           PGG      + D + L  I  +QA   R   ++        AA        GLL+ K+ T
Sbjct: 72  PGGTGVGALMEDPQALAFIR-QQAARARYVTSVSTGSLVLGAA--------GLLQGKRAT 122

Query: 139 CHPAFTDKLPTFWAVKSN-IHV-SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELL 196
            H A+ + L    A+  +   V  G + T  G     +FAL L  +LF  + A+ +   L
Sbjct: 123 THWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQL 182

Query: 197 LMH 199
              
Sbjct: 183 EYA 185

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 81.1 bits (201), Expect = 5e-18
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 9/161 (5%)

Query: 249 DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLL 308
                S++    +++  G++++A +  + A +   DL+++ GG+    +      L +LL
Sbjct: 40  QFTPLSLDGDR-VLSDLGLELVATELSAAALKE-LDLLVVCGGLRTPLK---YPELDRLL 94

Query: 309 KEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE----VVNGTKVVVDGK 364
            +    G   G + +    L + G+L     + HP     L+       +      +D  
Sbjct: 95  NDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRD 154

Query: 365 VITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS 405
            +++      ++  L +V + +G      V E L F   R 
Sbjct: 155 RLSAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSGARE 195

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 75.7 bits (187), Expect = 4e-16
 Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 29/206 (14%)

Query: 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKV-------DVVVASVERSTQIVASQGVKIIA 271
           +  RV+     G     I++ ++IL  A            V +      ++   G+ +  
Sbjct: 7   KNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRP-LIGRGGISVQP 65

Query: 272 DKSISDAAESVYDLIILPGGVAGAERLQK-SRILKKLLKEQKVAGRIYGAVCSSPIVLHK 330
                       +++I+       E L K    L   ++E  + G    A+ +   V+ K
Sbjct: 66  TAQWQSFDF--TNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAK 123

Query: 331 HGLLKAKKATAH-----------PSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFAL 379
            GLL+  KA  H           P +       ++   K ++DG V  S G  +     L
Sbjct: 124 AGLLQQNKAVMHSYFAHLFGELFPEI------MLMTEQKALIDGNVYLSSGPYSHSSVML 177

Query: 380 AIVSKFFGHARTRSVAEGLVFEYPRS 405
            IV ++FG   TR++    +      
Sbjct: 178 EIVEEYFGKH-TRNLGNQFLSTIESE 202

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 27/187 (14%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGA-------QVTMASVEPQLEVEASSGTRLVADTSI 72
            L P G        +  +++L  A            + +   +  +    G  +      
Sbjct: 13  ALAPTGRYF--ASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGGISVQPTAQW 69

Query: 73  SNCSHQVFDLIALPGGM--PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 130
            +      +++ +        S+   D  +   I  +   +     AI       +   G
Sbjct: 70  QSFDF--TNILIIGSIGDPLESLDKIDPALFDWIR-ELHLKGSKIVAIDTG-IFVVAKAG 125

Query: 131 LLRRKQITCHPAFTDKL----PTFWAVK---SNIHV-SGEVTTSRGPGTSFEFALCLVEQ 182
           LL++ +   H  F        P    +        +  G V  S GP +     L +VE+
Sbjct: 126 LLQQNKAVMHSYFAHLFGELFP---EIMLMTEQKALIDGNVYLSSGPYSHSSVMLEIVEE 182

Query: 183 LFGESVA 189
            FG+   
Sbjct: 183 YFGKHTR 189

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 39/195 (20%), Positives = 58/195 (29%), Gaps = 40/195 (20%)

Query: 228 ANGSEEIEIVTIVDILRRAKVDVVVAS------------VERSTQIVASQGVKIIADKSI 275
             G    E      + +    DV VAS            +       A     +     +
Sbjct: 23  KTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 82

Query: 276 SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH----KH 331
           S      +D I LPGG         +  L+ +L++    GRI  AVC  P  L     K 
Sbjct: 83  SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKD 142

Query: 332 G--LLKAKKATAHPSVIGKLTN------------------EVVNGT----KVVVDGKVIT 367
           G  ++K K  T+      +                       V G       V DG +IT
Sbjct: 143 GTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLIT 202

Query: 368 SRGLANVIDFALAIV 382
            +   +    A  +V
Sbjct: 203 GQNPQSSRSTAEKVV 217

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 41/197 (20%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMAS------------VEPQLEVEASSGTRLVADTSISN 74
           G    E  +   V +  G  V +AS            +  +    A +   L     +S 
Sbjct: 25  GLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSK 84

Query: 75  CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTL---LPWG- 130
                FD I LPGG        D E L+ +  + AE+ R+  A+C  P+  +      G 
Sbjct: 85  DDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGT 144

Query: 131 -LLRRKQITCHP-------AFTDKLPTFW----------------AVKSNIHVSGEVTTS 166
            +++ K +T               +P F                          G + T 
Sbjct: 145 PIVKGKTVTSFTDEEEREVGLDVHMP-FLLESTLRLRGANFVRGGKWTDFSVRDGNLITG 203

Query: 167 RGPGTSFEFALCLVEQL 183
           + P +S   A  +V  L
Sbjct: 204 QNPQSSRSTAEKVVAAL 220

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 40/189 (21%)

Query: 220 MPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIAD-- 272
           M ++ + ++     +GSE  E V  +  + R+    V  + ++    V +          
Sbjct: 6   MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET 65

Query: 273 ---------------KSISDAAESVYDLIILPGGVAGAERLQKSRI----------LKKL 307
                          + ++ A  +  D +I+PGG   A+ L               LK L
Sbjct: 66  RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL 125

Query: 308 LKEQKVAGRIYGAVCSSPIVLHKHGLLKAK-KATAHPSVIGKLTN---EVVNG--TKVVV 361
            +    AG+  G +C +P +L K      +            L     E V      +VV
Sbjct: 126 AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV 185

Query: 362 D--GKVITS 368
           D   K++T+
Sbjct: 186 DEDNKIVTT 194

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score = 51.9 bits (124), Expect = 7e-08
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 27/148 (18%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMASVE-PQLEV------EASSGTRLVADTS-------- 71
           G+E  EAV+ +  + R+GAQ    + +  Q++V      EA + TR V   +        
Sbjct: 21  GSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEI 80

Query: 72  --ISNCSHQVFDLIALPGGMPGSVRLRDC----------EILKKITSKQAEEKRLYGAIC 119
             ++       D + +PGG   +  L +             LK +     +  +  G +C
Sbjct: 81  RPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMC 140

Query: 120 AAPAVTLLPWGLLRRKQITCHPAFTDKL 147
            APA+    +    R  I       + L
Sbjct: 141 IAPAMLPKIFDFPLRLTIGTDIDTAEVL 168

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 28/166 (16%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMASV-EPQLEV------EASSGTRLVAD---------- 69
           G+E  EAV+++  L R        +  + Q +V      E+    R +            
Sbjct: 38  GSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSV 97

Query: 70  TSISNCSHQVFDLIALPGGMPGSVRLRDC-----------EILKKITSKQAEEKRLYGAI 118
             I     + FD++ +PGG   +    +               K    +    K+  GA+
Sbjct: 98  YDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAV 157

Query: 119 CAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVT 164
           C +PAV +     + + ++T        +     V  +      V 
Sbjct: 158 CISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVK 203

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 36/175 (20%)

Query: 230 GSEEIEIVTIVDILRRAKVDVVVAS-----------------VERSTQIVASQGVKIIAD 272
           GSE  E V ++  L R  V+    +                  E    +V S  +   + 
Sbjct: 38  GSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSV 97

Query: 273 KSISDAAESVYDLIILPGG-----------VAGAERLQKSRILKKLLKEQKVAGRIYGAV 321
             I       +D++++PGG               E        K  ++E   A +  GAV
Sbjct: 98  YDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAV 157

Query: 322 CSSPIVLHKH-GLLKAKKATAHPSVIGKLTN-----EVVNGTKVVVD--GKVITS 368
           C SP V+      +   K T      G +             K V D   ++ + 
Sbjct: 158 CISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSC 212

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 63/228 (27%)

Query: 191 EIGEL------LLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEI-EIVT----- 238
           E GE       +L    D  +   +  +V+   D    +L       EEI  I+      
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSIL-----SKEEIDHIIMSKDAV 61

Query: 239 -----IVDILRRAKVDVVVASVERSTQ-----IVASQGVKIIADKSISDAAESVYDL--- 285
                +   L   + ++V   VE   +     +++    +      ++       D    
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 286 ---IILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH 342
              +     V    RLQ    L++ L E + A           +++   G+L + K    
Sbjct: 122 DNQVFAKYNV---SRLQPYLKLRQALLELRPAKN---------VLI--DGVLGSGK---- 163

Query: 343 PSVIGKLTNEVVNGTKVVV--DGKV--ITSRGLANVIDFALAIVSKFF 386
            +    +  +V    KV    D K+  +      N  +  L ++ K  
Sbjct: 164 -TW---VALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLL 206

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 49.2 bits (117), Expect = 9e-07
 Identities = 34/205 (16%), Positives = 57/205 (27%), Gaps = 50/205 (24%)

Query: 228 ANGSEEIEIVTIVDILRRAKVDVVVASVE--------RSTQIVASQGVKI---------- 269
           + G+  IE +  +  L  A  +  VA++          +      + +            
Sbjct: 70  STGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRN 129

Query: 270 ---IADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326
              +AD   S  A+S Y  I +PGG      L +S+ +   L+      R   ++C  P 
Sbjct: 130 PKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA 189

Query: 327 VL----HKHGLLKAKKATAHPSVIGKLTNEVVN-------------------------GT 357
                 H    L      A P    K T E+                             
Sbjct: 190 AFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITG 249

Query: 358 KVVVDGKVITSRGLANVIDFALAIV 382
           +V  D K++T               
Sbjct: 250 RVHKDRKLLTGDSPFAANALGKLAA 274

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 29/214 (13%), Positives = 57/214 (26%), Gaps = 49/214 (22%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMASV---EPQLE------------------VEASSGTR 65
           G   +E ++ +  L  AG +  +A++     + E                         +
Sbjct: 72  GNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPK 131

Query: 66  LVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVT 125
            +AD   S  +   +  I +PGG    + L + + +        +  R   ++C  PA  
Sbjct: 132 KLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAF 191

Query: 126 L---LPWGLLRRKQITCHPAFTDKLPTFWAV-------------------------KSNI 157
           L        L    I   P   DK                                   +
Sbjct: 192 LALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRV 251

Query: 158 HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKE 191
           H   ++ T   P  +        +++       E
Sbjct: 252 HKDRKLLTGDSPFAANALGKLAAQEMLAAYAGLE 285

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 Length = 715

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 11/212 (5%)

Query: 184 FGESVAKEIG-------ELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEI 236
             +++A+ +G                 +L + EF           RV I IA+G + +  
Sbjct: 492 LAQTIAEMVGGEAPTTTNHPNHGRKTINLSQTEFPPATPTIKSR-RVAIIIADGYDNVAY 550

Query: 237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 296
                 +   +   +V    R +++ A+ G  +     +     ++ D I +PGG   AE
Sbjct: 551 DAAYAAISANQAIPLVIG-PRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAE 609

Query: 297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNG 356
            L K+      ++E     +  GA   +  ++ K   L     ++   V    +  VV  
Sbjct: 610 TLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHE--SYGVVTL 667

Query: 357 TKVVVDGKVITSRGLANVIDFALAIVSKFFGH 388
            KV  +      +       F          H
Sbjct: 668 KKVKPESFTDAVKIAKGAAGFLGEFFYAIAQH 699

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 30/212 (14%), Positives = 58/212 (27%), Gaps = 56/212 (26%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS---------------------GTR 65
           G   +EA+   +  R+ G +V   S   +   +  S                        
Sbjct: 25  GVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKT 84

Query: 66  LVADTSISNCSHQVFDLIALPGGMPGSVR-LRDCEILKKITSKQAEEKRLYGAICAAPA- 123
           L    +    +   + +     G  G++      + L+ I S+      +  A+C  PA 
Sbjct: 85  LAKIKTPKEVNADDYQIFFASAG-HGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAI 143

Query: 124 ---VTLLPWG--LLRRKQITCHPAFTDKL---------PTFWAV---------------- 153
              +T    G  L+  K IT      + +              V                
Sbjct: 144 FDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVG 203

Query: 154 --KSNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
                    G + T   P ++   A+  ++ L
Sbjct: 204 PWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 235

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 34/148 (22%)

Query: 269 IIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 328
           +   K+  +     Y +     G        K++ L+ +  E    G +  AVC  P + 
Sbjct: 85  LAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIF 144

Query: 329 -------HKHGLLKAKKATAHPSVI--------------------------GKLTNEVVN 355
                      L++ K  T    V                            K    V  
Sbjct: 145 DGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGP 204

Query: 356 GT-KVVVDGKVITSRGLANVIDFALAIV 382
                + DG+++T    A+    A+  +
Sbjct: 205 WDDYSITDGRLVTGVNPASAHSTAVRSI 232

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 26/230 (11%), Positives = 57/230 (24%), Gaps = 67/230 (29%)

Query: 220 MPRVLIPIANGSEEI------------EIVTIVDILRRAKVDVVVASVERSTQIV----- 262
             R LI + +                 EI+   D   +   +V   S             
Sbjct: 3   PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLP 62

Query: 263 ----------------ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKK 306
                           ++    +   K+ ++   S Y +     G        K++ L+ 
Sbjct: 63  KSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQD 122

Query: 307 LLKEQKVAGRIYGAVCSSPIVL-------HKHGLLKAKKATAHPSVIGKLTN-------- 351
           +  +    G +  A+C  P++            L++ K  T  P                
Sbjct: 123 IASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSR 182

Query: 352 --------------EVVNGT-----KVVVDGKVITSRGLANVIDFALAIV 382
                         + +          + DGK++T     +     +  +
Sbjct: 183 KLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAI 232

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 26/211 (12%), Positives = 49/211 (23%), Gaps = 54/211 (25%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMASVE----------PQLEVEASSGTRLVAD------- 69
           G   +E +   D   + G +V   S            P+  +                  
Sbjct: 25  GVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKA 84

Query: 70  ----TSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVT 125
                + +  +   + +     G          + L+ I SK      +  AIC  P + 
Sbjct: 85  LARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLF 144

Query: 126 L------LPWGLLRRKQITCHPAFTDKL---------PTFWAV----------------- 153
                      L+  K IT  P   +                V                 
Sbjct: 145 DGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHP 204

Query: 154 -KSNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
                   G++ T     +S+   +  +  L
Sbjct: 205 WDDYSITDGKLVTGVNANSSYSTTIRAINAL 235

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... Length = 753

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 281
            V I + +     +++ I+  L+   V   +    R  ++ A  G  +    + + A   
Sbjct: 602 VVAILLNDEVRSADLLAILKALKAKGVHAKLLY-SRMGEVTADDGTVLPIAATFAGAPSL 660

Query: 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQ 311
             D +I+P G      +  +      L E 
Sbjct: 661 TVDAVIVPCG--NIADIADNGDANYYLMEA 688

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	100.0
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.98
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.97
1u9c_A	224	APC35852; structural genomics, protein structure i	99.97
1u9c_A	224	APC35852; structural genomics, protein structure i	99.97
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.96
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.96
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.96
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.96
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.96
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.96
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.96
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.95
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.95
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.95
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.94
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.94
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.93
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.88
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.84
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.77
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.75
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.65
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.61
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.6
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.54
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.09
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	98.92
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.27
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.21
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	98.12
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.12
3m3p_A	250	Glutamine amido transferase; structural genomics,	98.11
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.07
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.03
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	98.01
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	98.0
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	97.99
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	97.97
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	97.89
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	97.85
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	97.82
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	97.75
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	97.74
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	97.71
3m3p_A	250	Glutamine amido transferase; structural genomics,	97.7
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.69
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.56
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.54
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.48
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.46
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.35
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	97.31
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.17
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.14
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	97.14
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	97.09
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.08
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	97.06
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	96.96
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	96.88
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	96.85
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	96.69
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	96.61
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	96.58
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	96.57
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	96.54
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	96.54
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	96.5
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.39
2a9v_A	212	GMP synthase; structural genomics, joint center fo	96.29
3uow_A	556	GMP synthetase; structural genomics consortium, SG	96.26
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	96.25
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	96.18
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	96.11
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	96.08
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	96.05
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	95.94
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	95.94
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	95.57
3uow_A	556	GMP synthetase; structural genomics consortium, SG	95.57
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	95.3
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	95.15
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	95.0
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	94.83
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	94.78
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	94.55
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	94.01
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	93.73
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	93.65
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	93.64
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	93.12
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	92.95
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	92.72
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	91.28
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	90.54
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	89.92
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	89.9
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	89.82
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	88.53
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	87.25
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	86.47
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	84.98
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	84.22
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	82.42
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	81.61

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-61  Score=474.29  Aligned_cols=341  Identities=18%  Similarity=0.234  Sum_probs=305.9

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCc---------------eeEeccCcEEecCcccCCCCCCc
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL---------------EVEASSGTRLVADTSISNCSHQV   79 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~---------------~v~~~~g~~v~~~~~~~~~~~~~   79 (405)
                      .+++||+||++|||++.|+..++++|+++|++++++|++++.               .++++.|..+.++..+++.++.+
T Consensus        10 ~~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   89 (396)
T 3uk7_A           10 ANSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK   89 (396)
T ss_dssp             -CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred             hcCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCccc
Confidence            346799999999999999999999999999999999998641               35677899999999999987778


Q ss_pred             ccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--Ccccc---
Q 015523           80 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVK---  154 (405)
Q Consensus        80 ~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~---  154 (405)
                      ||+|+||||+ +...+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.|++  .++++   
T Consensus        90 ~D~livpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~  167 (396)
T 3uk7_A           90 YDGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICHGQ-LILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPIT  167 (396)
T ss_dssp             CSEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSS
T ss_pred             CCEEEECCCc-chhhcccCHHHHHHHHHHHHcCCEEEEECchH-HHHHhccccCCCEeecCcchHHHHHHCCCEEECCCC
Confidence            9999999995 45557789999999999999999999999965 58999999999999999999888875  45544   


Q ss_pred             -CcEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccCccccccccccccccCCcCEEEEEeCCCCcH
Q 015523          155 -SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEE  233 (405)
Q Consensus       155 -~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~g~~~  233 (405)
                       .++|+|||+|||+|+.++.+|++++|+++.|++.                             .+++||+|+++|||++
T Consensus       168 ~~~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~~-----------------------------~~~~ki~ill~dg~~~  218 (396)
T 3uk7_A          168 PDVCVVDGSLITAATYEGHPEFIQLFVKALGGKIT-----------------------------GANKRILFLCGDYMED  218 (396)
T ss_dssp             TTCEEEETTEEEESSGGGHHHHHHHHHHHTTCEEE-----------------------------CCCCEEEEECCTTEEH
T ss_pred             CcceEecCCEEEecCcccHHHHHHHHHHHHhccch-----------------------------hccceEEEEecCCCcc
Confidence             3489999999999999999999999999998741                             2468999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEeecCCce----------------eecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          234 IEIVTIVDILRRAKVDVVVASVERSTQ----------------IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       234 ~e~~~~~~~l~~~~~~v~~vs~~~~~~----------------v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      .|+..+++.|+++||+++++|++++ +                ++++.|..+.++..++++++.+||+|+||||. +...
T Consensus       219 ~e~~~~~~~l~~ag~~v~~vs~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~-~~~~  296 (396)
T 3uk7_A          219 YEVKVPFQSLQALGCQVDAVCPEKK-AGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGR-APEY  296 (396)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTCC-TTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBS-HHHH
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCCC-CCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCc-chhh
Confidence            9999999999999999999999986 4                45778999999999999877899999999997 4566


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCC----cEEEcCCeEecCCh
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGT----KVVVDGKVITSRGL  371 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~----~~v~dg~iiTa~g~  371 (405)
                      +..++.+++||+++++++|+|++||+|+++|+++|||+|+++|+||...+.++.  ..+.+.    .+|.|||+|||+|+
T Consensus       297 ~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~  376 (396)
T 3uk7_A          297 LALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAW  376 (396)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSG
T ss_pred             hccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCceeEEEcCCEEECCCc
Confidence            788999999999999999999999999999999999999999999999888765  444544    59999999999999


Q ss_pred             hhHHHHHHHHHHHccCH
Q 015523          372 ANVIDFALAIVSKFFGH  388 (405)
Q Consensus       372 ~~~~~~~l~~i~~l~g~  388 (405)
                      .++.+|++++|+++.|.
T Consensus       377 ~~~~d~~l~li~~l~~~  393 (396)
T 3uk7_A          377 PGHPEFVSQLMALLGIQ  393 (396)
T ss_dssp             GGHHHHHHHHHHHHTCE
T ss_pred             hhHHHHHHHHHHHhccc
Confidence            99999999999999763

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-38  Score=280.60  Aligned_cols=184  Identities=35%  Similarity=0.619  Sum_probs=172.5

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecC-CceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER-STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~-~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      +++||+|+++|||++.|+..++++|+++||+++++|+++ + +++++.|+++.++..++++++.+||+|+||||......
T Consensus         4 m~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~-~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~   82 (190)
T 4e08_A            4 MSKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGE-AVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNA   82 (190)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSS-CEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHH
T ss_pred             CCcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCc-ceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHH
Confidence            458999999999999999999999999999999999998 6 99999999999999999997788999999999645566


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc-Cccc-CCcEEEcCCeEecCChhhHH
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-EVVN-GTKVVVDGKVITSRGLANVI  375 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~-~~~~-~~~~v~dg~iiTa~g~~~~~  375 (405)
                      +..++.+++||+++++++|+|+++|+|+++|+++|||+||++|+||...+.|++ ..+. ++.+|.|||+|||+|+.+++
T Consensus        83 ~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiTs~g~~a~~  162 (190)
T 4e08_A           83 MGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAY  162 (190)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETTEEEECSGGGHH
T ss_pred             hhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECCEEECCChHHHH
Confidence            788999999999999999999999999999999999999999999999999987 3444 58999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHhhcccccC
Q 015523          376 DFALAIVSKFFGHARTRSVAEGLVFEYP  403 (405)
Q Consensus       376 ~~~l~~i~~l~g~~~a~~v~~~l~~~~~  403 (405)
                      ||++++|+++.|++.|++|++.|+++|.
T Consensus       163 d~al~li~~~~g~~~a~~va~~l~~~~~  190 (190)
T 4e08_A          163 EFALKIAEELAGKEKVQEVAKGLLVAYN  190 (190)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHTCCC-
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhhCcccC
Confidence            9999999999999999999999999984

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=1.5e-38  Score=279.64  Aligned_cols=185  Identities=35%  Similarity=0.565  Sum_probs=171.9

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      +++||+|+++|||++.|+..+.++|++++++++++|+++++++++++|+.+.+|..++++++.+||+|+||||+.....+
T Consensus         4 m~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~   83 (190)
T 4e08_A            4 MSKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAM   83 (190)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHH
T ss_pred             CCcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHh
Confidence            35799999999999999999999999999999999999833999999999999999999987789999999996455667


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Ccccc-CcEEEeCCeEcCCCcccHH
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVK-SNIHVSGEVTTSRGPGTSF  173 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~~~-~~~v~dg~iiT~~g~~~~~  173 (405)
                      ..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.|++ +++++ +.+|+|||+|||+|+.+++
T Consensus        84 ~~~~~~~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiTs~g~~a~~  162 (190)
T 4e08_A           84 GESSLVGDLLRSQESGGGLIAAICAAP-TVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAY  162 (190)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETTEEEECSGGGHH
T ss_pred             hhCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECCEEECCChHHHH
Confidence            789999999999999999999999965 58999999999999999999999999 88885 7899999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHhcccccc
Q 015523          174 EFALCLVEQLFGESVAKEIGELLLMHNA  201 (405)
Q Consensus       174 ~~~l~ii~~~~g~~~a~~~a~~l~~~~~  201 (405)
                      ||++++|+++.|++.|+++++.|+++++
T Consensus       163 d~al~li~~~~g~~~a~~va~~l~~~~~  190 (190)
T 4e08_A          163 EFALKIAEELAGKEKVQEVAKGLLVAYN  190 (190)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHTCCC-
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhhCcccC
Confidence            9999999999999999999999999875

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=5.6e-38  Score=279.97  Aligned_cols=183  Identities=19%  Similarity=0.345  Sum_probs=170.3

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhC--CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRA--KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~--~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      +++||+|+++|||++.|+..++++|+.+  +|+++++|++++ +++++.|+++.++..+++.  ++||+|+||||. +..
T Consensus         3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~-~~~   78 (211)
T 3mgk_A            3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG-LVESSQKVRVETSLYTRDE--NIEKILFVPGGS-GTR   78 (211)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE-EEECTTCCEEEEBCCCCCS--SSEEEEEECCST-HHH
T ss_pred             CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC-eEecCCCcEEEeccchhhC--CCCCEEEECCCc-chh
Confidence            5689999999999999999999999998  499999999998 9999999999999999987  569999999996 556


Q ss_pred             hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcC----cc-cCCcEEEcCCeEecCCh
Q 015523          297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE----VV-NGTKVVVDGKVITSRGL  371 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~----~~-~~~~~v~dg~iiTa~g~  371 (405)
                      .+..++.+++||+++++++|+|++||+|+++|+++|||+||++|+||...+.|++.    .+ .++.+|+|||+|||+|+
T Consensus        79 ~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~  158 (211)
T 3mgk_A           79 EKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGV  158 (211)
T ss_dssp             HHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECSH
T ss_pred             hhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCCH
Confidence            67789999999999999999999999999999999999999999999999988862    33 47899999999999999


Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHhhcccccCCC
Q 015523          372 ANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS  405 (405)
Q Consensus       372 ~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~~~r~  405 (405)
                      .+++||++++|++++|++.|++|++.|++++.|+
T Consensus       159 ~a~~dlal~lv~~~~G~~~A~~va~~l~~~~~r~  192 (211)
T 3mgk_A          159 SAGIDMTLGFIEDLIGKEKALEISRSIEYFWNED  192 (211)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHhcEECCcCC
Confidence            9999999999999999999999999999999873

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=1.4e-37  Score=275.02  Aligned_cols=185  Identities=36%  Similarity=0.543  Sum_probs=170.8

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCc-CCCCccEEEEcCCccchHh
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AESVYDLIILPGGVAGAER  297 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~-~~~~~D~livpgG~~~~~~  297 (405)
                      +++||+|+++|||++.|+..++++|+++||+++++|++++.++.++.|+++.++..++++ ++.+||+|+||||......
T Consensus         2 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~   81 (197)
T 2rk3_A            2 ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN   81 (197)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence            357999999999999999999999999999999999998658999999999999999987 7789999999999744566


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcC---cccCCcEEEcCCeEecCChhhH
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE---VVNGTKVVVDGKVITSRGLANV  374 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~---~~~~~~~v~dg~iiTa~g~~~~  374 (405)
                      +..++.+++||+++++++|+|++||+|+++|+++|+|+||++|+||...+.|++.   .+.++.+|.|||+|||+|+.++
T Consensus        82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a~  161 (197)
T 2rk3_A           82 LSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS  161 (197)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGH
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHHH
Confidence            7889999999999999999999999999999999999999999999999999762   3788999999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHhhcccccC
Q 015523          375 IDFALAIVSKFFGHARTRSVAEGLVFEYP  403 (405)
Q Consensus       375 ~~~~l~~i~~l~g~~~a~~v~~~l~~~~~  403 (405)
                      ++|++++|+++.|++.|+++++.|++++.
T Consensus       162 ~d~al~li~~l~g~~~a~~va~~~~~~~~  190 (197)
T 2rk3_A          162 FEFALAIVEALNGKEVAAQVKAPLVLKDL  190 (197)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHGGGTC---
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999998764

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=2.3e-37  Score=279.59  Aligned_cols=182  Identities=26%  Similarity=0.385  Sum_probs=171.1

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHh-CCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      +++||+|+++|||.+.|+..++++|+. .+|+++++|++++ ++.+++|+.+.++..++++  ++||+|+||||. +...
T Consensus         4 m~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~-g~~~   79 (231)
T 3noq_A            4 MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG-PVVASSGLVLQATTSFADC--PPLDVICIPGGT-GVGA   79 (231)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE-EEECTTSCEEEECEETTTC--CCCSEEEECCST-THHH
T ss_pred             CcEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC-cEEcCCCCEEecccChhHC--CcCCEEEECCCC-Chhh
Confidence            468999999999999999999999999 7899999999998 9999999999999999998  679999999996 5666


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHH
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVI  375 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~  375 (405)
                      +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++  ..+.++.+|.|||+|||+|+.+++
T Consensus        80 ~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~~  159 (231)
T 3noq_A           80 LMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGI  159 (231)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHHH
T ss_pred             hccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHHH
Confidence            788999999999999999999999999999999999999999999999998875  456788999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHhhcccccCC
Q 015523          376 DFALAIVSKFFGHARTRSVAEGLVFEYPR  404 (405)
Q Consensus       376 ~~~l~~i~~l~g~~~a~~v~~~l~~~~~r  404 (405)
                      ||++++|++++|++.|++|++.|.|++.+
T Consensus       160 d~aL~li~~~~G~~~A~~va~~l~~~~~~  188 (231)
T 3noq_A          160 DFALTLAAELFDAATAQRVQLQLEYAPAP  188 (231)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHcCHHHHHHHHHhceeCCCC
Confidence            99999999999999999999999998754

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=3.4e-38  Score=279.59  Aligned_cols=181  Identities=19%  Similarity=0.317  Sum_probs=162.9

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCC------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCc
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAK------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV  292 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~  292 (405)
                      +++||+|+++|||.+.|+..++++|+.+|      |+++++|++++ +++++.|+++.++ .++++++.+||+|+||||.
T Consensus         4 ~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG~   81 (202)
T 3gra_A            4 APYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD-RVLSDLGLELVAT-ELSAAALKELDLLVVCGGL   81 (202)
T ss_dssp             -CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS-EEEBTTSCEEECE-ECCSGGGTTCSEEEEECCT
T ss_pred             CcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC-ceEcCCCCEEECC-CcccccCCCCCEEEEeCCC
Confidence            46899999999999999999999999986      99999999998 9999999999999 9999666899999999997


Q ss_pred             cchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----CcccCCcEEEcCCeEec
Q 015523          293 AGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVITS  368 (405)
Q Consensus       293 ~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~~~~~~~v~dg~iiTa  368 (405)
                      ... .. . +.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++    ..+.++.+|.|||+|||
T Consensus        82 ~~~-~~-~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~iiTs  158 (202)
T 3gra_A           82 RTP-LK-Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLSA  158 (202)
T ss_dssp             TCC-SC-C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEEEE
T ss_pred             chh-hc-c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEEEC
Confidence            432 22 4 89999999999999999999999999999999999999999999888865    35667799999999999


Q ss_pred             CChhhHHHHHHHHHHHccCHHHHHHHHhhcccccCC
Q 015523          369 RGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR  404 (405)
Q Consensus       369 ~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~~~r  404 (405)
                      +|+.+++||++++|++++|++.|+++++.|++++.|
T Consensus       159 ~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~  194 (202)
T 3gra_A          159 ASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSGAR  194 (202)
T ss_dssp             SSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCccc
Confidence            999999999999999999999999999999999987

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=1.2e-37  Score=277.65  Aligned_cols=190  Identities=37%  Similarity=0.631  Sum_probs=170.9

Q ss_pred             CCCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      ..+++||+|+++|||+..|+..++++|++++|+++++|++++.++++++|+++.+|..++++++.+||+|+||||+....
T Consensus         6 ~~m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~   85 (208)
T 3ot1_A            6 QGMSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQ   85 (208)
T ss_dssp             ---CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHH
T ss_pred             cccCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHH
Confidence            34567999999999999999999999999999999999996239999999999999999999777899999999954466


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCcEEEe--CCeEcCCCccc
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVS--GEVTTSRGPGT  171 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~v~d--g~iiT~~g~~~  171 (405)
                      .+..++.+++||+++++++|+|+++|+|++++|+++|+|+|+++|+||...+.|.+.++.++++++|  ||+|||+|+.+
T Consensus        86 ~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~iiTs~g~~a  165 (208)
T 3ot1_A           86 AFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGT  165 (208)
T ss_dssp             HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTEEEECSGGG
T ss_pred             HHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCEEECCCHHH
Confidence            6778999999999999999999999997536899999999999999999999997777888888875  59999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          172 SFEFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       172 ~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      ++||++++|+++.|++.|+++++.|++++..+
T Consensus       166 ~~d~al~lv~~l~G~~~a~~va~~l~~~~~~~  197 (208)
T 3ot1_A          166 ALEFALAMIALLAGVELAQHVAAPMVLHPQQL  197 (208)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHGGGTCCHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhheeCCCCC
Confidence            99999999999999999999999999954433

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=9e-38  Score=278.37  Aligned_cols=183  Identities=31%  Similarity=0.558  Sum_probs=170.5

Q ss_pred             CCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecC-CceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          218 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER-STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~-~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      .+++||+|+++|||++.|+..++++|+.+||+++++|+++ + ++.++.|+++.++..++++++.+||+|+||||..+..
T Consensus         7 ~m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~-~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~   85 (208)
T 3ot1_A            7 GMSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKL-QVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQ   85 (208)
T ss_dssp             --CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCS-EEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHH
T ss_pred             ccCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCc-ceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHH
Confidence            3568999999999999999999999999999999999996 5 9999999999999999998778999999999975566


Q ss_pred             hhhcChHHHHHHHHHhhcCCEEEEEchHH-HHHHHcCCCCCCeeecCcchhhhhhcCcccCCcEEE--cCCeEecCChhh
Q 015523          297 RLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVV--DGKVITSRGLAN  373 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~-~~La~aGlL~g~~~t~~~~~~~~l~~~~~~~~~~v~--dg~iiTa~g~~~  373 (405)
                      .+..++.+++||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.|.+..+.++.+|.  |||+|||+|+.+
T Consensus        86 ~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~iiTs~g~~a  165 (208)
T 3ot1_A           86 AFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGT  165 (208)
T ss_dssp             HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTEEEECSGGG
T ss_pred             HHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCEEECCCHHH
Confidence            67899999999999999999999999999 999999999999999999999999887777778887  459999999999


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523          374 VIDFALAIVSKFFGHARTRSVAEGLVFE  401 (405)
Q Consensus       374 ~~~~~l~~i~~l~g~~~a~~v~~~l~~~  401 (405)
                      ++||++++|+++.|++.|++|++.|+++
T Consensus       166 ~~d~al~lv~~l~G~~~a~~va~~l~~~  193 (208)
T 3ot1_A          166 ALEFALAMIALLAGVELAQHVAAPMVLH  193 (208)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhheeC
Confidence            9999999999999999999999999984

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=1.1e-37  Score=277.18  Aligned_cols=186  Identities=36%  Similarity=0.580  Sum_probs=176.1

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCc--eeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST--QIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~--~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      ++||+|+++|||++.|+..++++|+++||+++++|++++.  ++.++.|+.+.++..++++++.+||+|+||||..+...
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~   81 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   81 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence            5799999999999999999999999999999999999865  79999999999999999987789999999999755666


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHH-HHHHHcCCCCCCeeecCcchhhhhhcCcccCCcEEEcCCe--EecCChhhH
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANV  374 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~-~~La~aGlL~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~i--iTa~g~~~~  374 (405)
                      +..++.+++||+++++++|+|++||+|+ ++|+++|||+||++|+||.+.+.+++..+.+..+|+|||+  |||+|+.++
T Consensus        82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~viTs~g~~s~  161 (205)
T 2ab0_A           82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTA  161 (205)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGH
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcCeEECcChhhH
Confidence            7789999999999999999999999999 9999999999999999999999998877888899999999  999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHhhcccccCCC
Q 015523          375 IDFALAIVSKFFGHARTRSVAEGLVFEYPRS  405 (405)
Q Consensus       375 ~~~~l~~i~~l~g~~~a~~v~~~l~~~~~r~  405 (405)
                      ++|++++++++.|.+.|+++++.|++++.|+
T Consensus       162 ~d~al~li~~l~g~~~a~~va~~l~~~~~r~  192 (205)
T 2ab0_A          162 IDFGLKIIDLLVGREKAHEVASQLVMAAGIY  192 (205)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTTCCTTSC
T ss_pred             HHHHHHHHHHhcChHHHHHHHHhcccCCCCC
Confidence            9999999999999999999999999999885

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=4.7e-37  Score=280.35  Aligned_cols=184  Identities=17%  Similarity=0.289  Sum_probs=170.9

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHH-HhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDIL-RRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l-~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      +++||+|+++|||.+.|+..++++| ...+|+++++|++++ +|.++.|+.+.++..+++++ .+||+|+||||..+...
T Consensus        22 m~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~   99 (253)
T 3ewn_A           22 GDEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-PVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA   99 (253)
T ss_dssp             CCCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS-CEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-eEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence            4589999999999999999999999 567899999999998 99999999999999999985 47899999999634566


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHH
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVI  375 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~  375 (405)
                      +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++  ..+.++.+|+|||+|||+|+.+++
T Consensus       100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~i  179 (253)
T 3ewn_A          100 AASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGL  179 (253)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHHH
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHHH
Confidence            778999999999999999999999999999999999999999999999998875  455688999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHhhcccccCC
Q 015523          376 DFALAIVSKFFGHARTRSVAEGLVFEYPR  404 (405)
Q Consensus       376 ~~~l~~i~~l~g~~~a~~v~~~l~~~~~r  404 (405)
                      ||++++|++++|++.|++|++.|+|++.+
T Consensus       180 dlaL~lv~~l~G~~~A~~va~~l~~~~~~  208 (253)
T 3ewn_A          180 DFGLSMVAELRDQTYAECAQLMSEYDPDP  208 (253)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHcCHHHHHHHHHhcccCCCC
Confidence            99999999999999999999999998754

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=3.3e-37  Score=271.38  Aligned_cols=182  Identities=26%  Similarity=0.436  Sum_probs=165.0

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCC--ceeecCCCcEEeeCCCccCcCC-----CCccEEEEcCC
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS--TQIVASQGVKIIADKSISDAAE-----SVYDLIILPGG  291 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~--~~v~~~~g~~v~~~~~l~~~~~-----~~~D~livpgG  291 (405)
                      +|+||+|+++|||++.|+..|+++|+++|++++++++..+  ..++++.|+++.+|..+++++.     .+||+|+||||
T Consensus         3 ~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG   82 (194)
T 4gdh_A            3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG   82 (194)
T ss_dssp             --CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence            6899999999999999999999999999999999998543  3689999999999999998754     35999999999


Q ss_pred             ccchHhhhcChHHHHHHHHHhhc-CCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEec
Q 015523          292 VAGAERLQKSRILKKLLKEQKVA-GRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITS  368 (405)
Q Consensus       292 ~~~~~~~~~~~~l~~~l~~~~~~-~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa  368 (405)
                      ..++..+..++.+++||++++++ +|+|++||+|+ +|+.+|+|+||++|+||...+.|++  ..+.++++|+|||+|||
T Consensus        83 ~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~iiTs  161 (194)
T 4gdh_A           83 GLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITS  161 (194)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEEEE
T ss_pred             chhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEEEC
Confidence            86778889999999999999865 79999999998 5677788999999999999999986  57789999999999999


Q ss_pred             CChhhHHHHHHHHHHHccCHHHHHHHHhhcccc
Q 015523          369 RGLANVIDFALAIVSKFFGHARTRSVAEGLVFE  401 (405)
Q Consensus       369 ~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~  401 (405)
                      +|+.++++|++++|++++|++.|++|++.|+++
T Consensus       162 ~g~~~~~d~al~lve~l~G~~~a~~va~~l~~P  194 (194)
T 4gdh_A          162 QGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP  194 (194)
T ss_dssp             CSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTCC
T ss_pred             CCHhHHHHHHHHHHHHHcCHHHHHHHHhhccCC
Confidence            999999999999999999999999999999875

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.8e-37  Score=276.64  Aligned_cols=190  Identities=17%  Similarity=0.229  Sum_probs=171.8

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhc--CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~--~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      +++||+||++|||++.|+..+.++|+++  +|+++++|++++ ++++++|+.+.+|..+++.+  .||+|+||||. +..
T Consensus         3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~~~~~~--~~D~livpGG~-~~~   78 (211)
T 3mgk_A            3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG-LVESSQKVRVETSLYTRDEN--IEKILFVPGGS-GTR   78 (211)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE-EEECTTCCEEEEBCCCCCSS--SEEEEEECCST-HHH
T ss_pred             CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC-eEecCCCcEEEeccchhhCC--CCCEEEECCCc-chh
Confidence            5789999999999999999999999998  599999999997 99999999999999999876  59999999994 566


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-C---ccc-cCcEEEeCCeEcCCC
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAV-KSNIHVSGEVTTSRG  168 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~---~~~-~~~~v~dg~iiT~~g  168 (405)
                      .+..++.+++||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++ +   .+. ++.+|+|||+|||+|
T Consensus        79 ~~~~~~~~~~~l~~~~~~~k~iaaiC~G-~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G  157 (211)
T 3mgk_A           79 EKVNDDNFINFIGNMVKESKYIISVCTG-SALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSG  157 (211)
T ss_dssp             HHTTCHHHHHHHHHHHHHCSEEEECTTH-HHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECS
T ss_pred             hhcCCHHHHHHHHHHHHcCCEEEEEchH-HHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCC
Confidence            6778899999999999999999999996 568999999999999999999998887 3   444 568999999999999


Q ss_pred             cccHHHHHHHHHHHhcChHHHHHHHHhcccccccCcccccccc
Q 015523          169 PGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFN  211 (405)
Q Consensus       169 ~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~  211 (405)
                      +.+++||++++|+++.|++.|+++++.|++++.|+ ..+.+|.
T Consensus       158 ~~a~~dlal~lv~~~~G~~~A~~va~~l~~~~~r~-~~q~~f~  199 (211)
T 3mgk_A          158 VSAGIDMTLGFIEDLIGKEKALEISRSIEYFWNED-SNYDPFS  199 (211)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHTCCCCCC-CSCCGGG
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHhcEECCcCC-CCCchhH
Confidence            99999999999999999999999999999998876 3445554

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=4.7e-37  Score=273.20  Aligned_cols=188  Identities=33%  Similarity=0.542  Sum_probs=174.3

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCc--eeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL--EVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~--~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      ++||+|+++|||+..|+..++++|++++|++++++++++.  ++.+++|+.+.++..++++++.+||+|+||||......
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~   81 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   81 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence            5699999999999999999999999999999999999864  89999999999999998887678999999999544566


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCcEEEeCCe--EcCCCcccH
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEV--TTSRGPGTS  172 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~i--iT~~g~~~~  172 (405)
                      +..++.+.+||+++++++++|+++|+|++++|+++|+|+|+++|+||.+.+.+.+..+.++++|+|||+  |||+|+.++
T Consensus        82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~viTs~g~~s~  161 (205)
T 2ab0_A           82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTA  161 (205)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGH
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcCeEECcChhhH
Confidence            778999999999999999999999997636899999999999999999999998877788899999999  999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHhcccccccCc
Q 015523          173 FEFALCLVEQLFGESVAKEIGELLLMHNADNS  204 (405)
Q Consensus       173 ~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~  204 (405)
                      .||++++|+++.|.+.|+++++.|++++.|..
T Consensus       162 ~d~al~li~~l~g~~~a~~va~~l~~~~~r~~  193 (205)
T 2ab0_A          162 IDFGLKIIDLLVGREKAHEVASQLVMAAGIYN  193 (205)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTTCCTTSCC
T ss_pred             HHHHHHHHHHhcChHHHHHHHHhcccCCCCCc
Confidence            99999999999999999999999999988873

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=4.2e-37  Score=280.66  Aligned_cols=184  Identities=16%  Similarity=0.233  Sum_probs=170.0

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHH-HhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVL-RRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l-~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      ++||+||++|||+..|+..++++| +..+|+++++|++++ +|++++|+.+.+|..+++++. +||+|+||||..+...+
T Consensus        23 ~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-~V~~~~G~~i~~d~~l~~~~~-~yD~liVPGG~~g~~~l  100 (253)
T 3ewn_A           23 DEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-PVTSDAGLAIVPTATFGTCPR-DLTVLFAPGGTDGTLAA  100 (253)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS-CEECTTSCEECCSEETTTSCS-SCSEEEECCBSHHHHHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-eEEcCCCCEEeCCcCHHHcCC-CCCEEEECCCccchhhh
Confidence            379999999999999999999999 567999999999998 999999999999999999874 89999999995355667


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccHH
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSF  173 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~~  173 (405)
                      ..++.+++||+++++++++|+++|+| .++|+++|||+|+++||||...+.|++  ..++++++|+|||+|||+|+.+++
T Consensus       101 ~~~~~l~~~Lr~~~~~gk~IaaICtG-~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~i  179 (253)
T 3ewn_A          101 ASDAETLAFMADRGARAKYITSVCSG-SLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGL  179 (253)
T ss_dssp             TTCHHHHHHHHHHHTTCSEEEEETTH-HHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHHH
T ss_pred             ccCHHHHHHHHHHHHcCCEEEEEChH-HHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHHH
Confidence            78999999999999999999999996 568999999999999999999999987  445678899999999999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          174 EFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       174 ~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      ||++++|+++.|.+.|+++++.|+|++.+.
T Consensus       180 dlaL~lv~~l~G~~~A~~va~~l~~~~~~p  209 (253)
T 3ewn_A          180 DFGLSMVAELRDQTYAECAQLMSEYDPDPP  209 (253)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHTTCCCCCS
T ss_pred             HHHHHHHHHHcCHHHHHHHHHhcccCCCCC
Confidence            999999999999999999999999998665

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=6.7e-37  Score=276.51  Aligned_cols=183  Identities=27%  Similarity=0.341  Sum_probs=169.8

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHh-cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      +++||+||++|||+..|+..++++|++ .+|+++++|++++ +|++++|+.+.+|..+++++  +||+|+|||| .+...
T Consensus         4 m~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~l~~~~--~~D~livpGG-~g~~~   79 (231)
T 3noq_A            4 MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGG-TGVGA   79 (231)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE-EEECTTSCEEEECEETTTCC--CCSEEEECCS-TTHHH
T ss_pred             CcEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC-cEEcCCCCEEecccChhHCC--cCCEEEECCC-CChhh
Confidence            457999999999999999999999998 7999999999997 99999999999999999886  6999999999 45666


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccH
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTS  172 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~  172 (405)
                      +..++.+++||+++++++++|+++|+| .++|+++|+|+|+++||||...+.|++  ..++++++|+|||+|||+|+.++
T Consensus        80 ~~~~~~l~~~lr~~~~~g~~v~aiC~G-~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~  158 (231)
T 3noq_A           80 LMEDPQALAFIRQQAARARYVTSVSTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAG  158 (231)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTH-HHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHH
T ss_pred             hccCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHH
Confidence            778999999999999999999999996 568999999999999999999999976  34567889999999999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          173 FEFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       173 ~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      +||++++|+++.|++.|+++++.|+|++.+.
T Consensus       159 ~d~aL~li~~~~G~~~A~~va~~l~~~~~~p  189 (231)
T 3noq_A          159 IDFALTLAAELFDAATAQRVQLQLEYAPAPP  189 (231)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHTTCCCCCS
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHhceeCCCCC
Confidence            9999999999999999999999999998655

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=3e-37  Score=274.97  Aligned_cols=182  Identities=19%  Similarity=0.220  Sum_probs=164.8

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCC-------CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCC
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG  291 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG  291 (405)
                      +++||+|+++|||.+.|+..++++|+.+|       |+++++|++++ +++++.|+++.+|..++++  ++||+|+||||
T Consensus         7 ~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~G~~v~~d~~~~~~--~~~D~livpGg   83 (209)
T 3er6_A            7 KNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGGISVQPTAQWQSF--DFTNILIIGSI   83 (209)
T ss_dssp             CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS-CEEETTTEEEECSSCGGGC--SCCSEEEECCC
T ss_pred             CCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-ceecCCCeEEeCCcCcccc--CCCCEEEECCC
Confidence            57899999999999999999999999875       99999999998 9999999999999999988  78999999999


Q ss_pred             ccchH-hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc----Ccc-cCCcEEEcCCe
Q 015523          292 VAGAE-RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVV-NGTKVVVDGKV  365 (405)
Q Consensus       292 ~~~~~-~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~----~~~-~~~~~v~dg~i  365 (405)
                      ..... .+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++    ..+ .++.+|+|||+
T Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~Dg~i  163 (209)
T 3er6_A           84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNV  163 (209)
T ss_dssp             SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEETTE
T ss_pred             CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEeCCE
Confidence            73222 2367999999999999999999999999999999999999999999998888865    334 44579999999


Q ss_pred             EecCChhhHHHHHHHHHHHccCHHHHHHHHhhcccccC
Q 015523          366 ITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYP  403 (405)
Q Consensus       366 iTa~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~~~  403 (405)
                      |||+|+.+++||++++|++++|++.|++|++.|++++.
T Consensus       164 iTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~  201 (209)
T 3er6_A          164 YLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIES  201 (209)
T ss_dssp             EEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC---
T ss_pred             EECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcc
Confidence            99999999999999999999999999999999999875

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=1.1e-37  Score=276.23  Aligned_cols=185  Identities=21%  Similarity=0.240  Sum_probs=160.5

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcC------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCC
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAG------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG   88 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg   88 (405)
                      .+++||+||++|||++.|+..+.++|+.++      |+++++|++++ ++++++|+++.+| .+++.+..+||+|+||||
T Consensus         3 ~~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG   80 (202)
T 3gra_A            3 LAPYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD-RVLSDLGLELVAT-ELSAAALKELDLLVVCGG   80 (202)
T ss_dssp             --CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS-EEEBTTSCEEECE-ECCSGGGTTCSEEEEECC
T ss_pred             CCcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC-ceEcCCCCEEECC-CcccccCCCCCEEEEeCC
Confidence            357899999999999999999999999885      99999999997 9999999999999 999865568999999999


Q ss_pred             chhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC----CccccCcEEEeCCeE
Q 015523           89 MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVKSNIHVSGEVT  164 (405)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~----~~~~~~~~v~dg~ii  164 (405)
                      . ..... . +.+++||+++++++++|+++|+| .++|+++|+|+|+++||||...+.|++    ..+.++++|+|||+|
T Consensus        81 ~-~~~~~-~-~~l~~~l~~~~~~g~~iaaIC~G-~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~ii  156 (202)
T 3gra_A           81 L-RTPLK-Y-PELDRLLNDCAAHGMALGGLWNG-AWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRL  156 (202)
T ss_dssp             T-TCCSC-C-TTHHHHHHHHHHHTCEEEEETTH-HHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEE
T ss_pred             C-chhhc-c-HHHHHHHHHHHhhCCEEEEECHH-HHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEE
Confidence            5 33323 4 89999999999999999999996 568999999999999999999888876    345667899999999


Q ss_pred             cCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccCcc
Q 015523          165 TSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSL  205 (405)
Q Consensus       165 T~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~  205 (405)
                      ||+|+.+++||++++|+++.|++.|+++++.|++++.++..
T Consensus       157 Ts~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~~~~  197 (202)
T 3gra_A          157 SAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSGAREGH  197 (202)
T ss_dssp             EESSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC--------
T ss_pred             ECCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcccccc
Confidence            99999999999999999999999999999999999988743

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=6e-37  Score=264.57  Aligned_cols=166  Identities=18%  Similarity=0.199  Sum_probs=157.1

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      +++|.|++.+||++.|+..|+++|+++|++++++|++++ +++++.|+++.+|..++++++.+||+|++|||+ +...++
T Consensus         8 ~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~-~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~-g~~~l~   85 (177)
T 4hcj_A            8 NNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG-TAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGI-GCITLW   85 (177)
T ss_dssp             CEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE-EEEETTSCEEEECEEGGGCCGGGCSEEEECCSG-GGGGGT
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-eEeeCCCCEEecCccHHHCCHhHCCEEEECCCc-cHHHHh
Confidence            456778889999999999999999999999999999998 999999999999999999999999999999997 567788


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHHHH
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDF  377 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~~~  377 (405)
                      .++.+++||+++++++|+|++||+|+++|+++|||+||++|+||..++.+++  ..+.++++|+|||+|||+|+.++.+|
T Consensus        86 ~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~~~  165 (177)
T 4hcj_A           86 DDWRTQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSKDF  165 (177)
T ss_dssp             TCHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHHH
T ss_pred             hCHHHHHHHHHHHHhCCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999886  57889999999999999999999999


Q ss_pred             HHHHHHHccC
Q 015523          378 ALAIVSKFFG  387 (405)
Q Consensus       378 ~l~~i~~l~g  387 (405)
                      ++++++.|.+
T Consensus       166 a~~lve~L~s  175 (177)
T 4hcj_A          166 ANAVVGVLNS  175 (177)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998854

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=8e-37  Score=270.23  Aligned_cols=187  Identities=36%  Similarity=0.549  Sum_probs=167.8

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCC-CCCcccEEEEcCCchhhhc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC-SHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~-~~~~~d~liipgg~~~~~~   94 (405)
                      +++||+|+++|||+..|+..+.++|+++++++++++++++.++++++|+.+.++..+++. ++.+||+|+||||......
T Consensus         2 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~   81 (197)
T 2rk3_A            2 ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN   81 (197)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence            357999999999999999999999999999999999988548999999999999999887 5568999999999534555


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-C--ccccCcEEEeCCeEcCCCccc
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F--WAVKSNIHVSGEVTTSRGPGT  171 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~--~~~~~~~v~dg~iiT~~g~~~  171 (405)
                      +..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.|++ +  .+.++.+|+|||+|||+|+.+
T Consensus        82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~-~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a  160 (197)
T 2rk3_A           82 LSESAAVKEILKEQENRKGLIATICAGP-TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGT  160 (197)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGG
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHH
Confidence            7789999999999999999999999965 58999999999999999999999987 4  367888999999999999999


Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          172 SFEFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       172 ~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      ++||++++|+++.|++.|+++++.|++++...
T Consensus       161 ~~d~al~li~~l~g~~~a~~va~~~~~~~~~~  192 (197)
T 2rk3_A          161 SFEFALAIVEALNGKEVAAQVKAPLVLKDLEH  192 (197)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHGGGTC-----
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999999999999887654

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=8.4e-37  Score=268.77  Aligned_cols=183  Identities=25%  Similarity=0.347  Sum_probs=164.7

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCC--ceeEeccCcEEecCcccCCCCCC-----cccEEEEcC
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ--LEVEASSGTRLVADTSISNCSHQ-----VFDLIALPG   87 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~--~~v~~~~g~~v~~~~~~~~~~~~-----~~d~liipg   87 (405)
                      ++|+||+|+++|||++.|+..|+++|+++|++++++++..+  .++++++|+++.+|..+++++..     +||+|+|||
T Consensus         2 s~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPG   81 (194)
T 4gdh_A            2 SHMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPG   81 (194)
T ss_dssp             ---CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECC
Confidence            46889999999999999999999999999999999987542  36899999999999999988753     599999999


Q ss_pred             CchhhhccccChHHHHHHHHHHHc-CCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeE
Q 015523           88 GMPGSVRLRDCEILKKITSKQAEE-KRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVT  164 (405)
Q Consensus        88 g~~~~~~~~~~~~~~~~l~~~~~~-~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~ii  164 (405)
                      |+.+...+.+++.+.+||++++++ +|+|+++|+| . +|+.+|+|+|+++|+||...+.|++  ..++++++|+|||+|
T Consensus        82 G~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g-~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~ii  159 (194)
T 4gdh_A           82 GGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAG-T-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLI  159 (194)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGG-G-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEE
T ss_pred             CchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccc-c-cchhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEE
Confidence            976678888999999999999875 7999999996 4 4788999999999999999999887  678899999999999


Q ss_pred             cCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccc
Q 015523          165 TSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH  199 (405)
Q Consensus       165 T~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~  199 (405)
                      ||+|+.+++||++++|+++.|++.|+++++.|+++
T Consensus       160 Ts~g~~~~~d~al~lve~l~G~~~a~~va~~l~~P  194 (194)
T 4gdh_A          160 TSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP  194 (194)
T ss_dssp             EECSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTCC
T ss_pred             ECCCHhHHHHHHHHHHHHHcCHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999874

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=1.3e-36  Score=270.87  Aligned_cols=186  Identities=14%  Similarity=0.131  Sum_probs=162.4

Q ss_pred             CCCCcEEEEEecCCCchhhHHHHHHHHHhcC-------CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEc
Q 015523           14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALP   86 (405)
Q Consensus        14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~-------~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liip   86 (405)
                      +++++||+||++|||++.|+..+.++|+.++       |+++++|++++ ++++++|+++.+|..+++++  +||+|+||
T Consensus         5 ~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~G~~v~~d~~~~~~~--~~D~livp   81 (209)
T 3er6_A            5 NKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGGISVQPTAQWQSFD--FTNILIIG   81 (209)
T ss_dssp             --CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS-CEEETTTEEEECSSCGGGCS--CCSEEEEC
T ss_pred             CCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-ceecCCCeEEeCCcCccccC--CCCEEEEC
Confidence            4567899999999999999999999999874       99999999997 99999999999999999875  79999999


Q ss_pred             CCchh-hhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-C---cccc-CcEEEe
Q 015523           87 GGMPG-SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAVK-SNIHVS  160 (405)
Q Consensus        87 gg~~~-~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~---~~~~-~~~v~d  160 (405)
                      ||... ...+..++.+++||+++++++++|++||+| .++|+++|+|+|+++|+||...+.|++ +   .+.+ +.+|+|
T Consensus        82 Gg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G-~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~D  160 (209)
T 3er6_A           82 SIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTG-IFVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALID  160 (209)
T ss_dssp             CCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTH-HHHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEE
T ss_pred             CCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEe
Confidence            99522 222367899999999999999999999996 568999999999999999998888876 3   4444 469999


Q ss_pred             CCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          161 GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       161 g~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      ||+|||+|+.+++||++++|+++.|++.|+++++.|++++...
T Consensus       161 g~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~~  203 (209)
T 3er6_A          161 GNVYLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIESEG  203 (209)
T ss_dssp             TTEEEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC-----
T ss_pred             CCEEECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcccc
Confidence            9999999999999999999999999999999999999988665

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=1.8e-36  Score=261.66  Aligned_cols=167  Identities=20%  Similarity=0.234  Sum_probs=156.9

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      .+++|.||+.+||++.|+..|+++|+++|++++++|++++ ++++++|.++.+|..++++++.+||+|+||||+ ++..+
T Consensus         7 t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~-~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~-g~~~l   84 (177)
T 4hcj_A            7 TNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG-TAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGI-GCITL   84 (177)
T ss_dssp             CCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE-EEEETTSCEEEECEEGGGCCGGGCSEEEECCSG-GGGGG
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-eEeeCCCCEEecCccHHHCCHhHCCEEEECCCc-cHHHH
Confidence            4567889999999999999999999999999999999998 999999999999999999998899999999994 67778


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccHH
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSF  173 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~~  173 (405)
                      ..++.+.+||+++++++|+|++||+|+. +|+++|+|+||++|+||...+.+++  ..+.++++|+|||+|||+|+.++.
T Consensus        85 ~~~~~~~~~l~~~~~~~k~iaaIC~g~~-~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~  163 (177)
T 4hcj_A           85 WDDWRTQGLAKLFLDNQKIVAGIGSGVV-IMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSK  163 (177)
T ss_dssp             TTCHHHHHHHHHHHHTTCEEEEETTHHH-HHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHH
T ss_pred             hhCHHHHHHHHHHHHhCCEEEEecccHH-HHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHH
Confidence            8999999999999999999999999765 8999999999999999999988887  688899999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 015523          174 EFALCLVEQLFG  185 (405)
Q Consensus       174 ~~~l~ii~~~~g  185 (405)
                      +|++++|+.+.+
T Consensus       164 ~~a~~lve~L~s  175 (177)
T 4hcj_A          164 DFANAVVGVLNS  175 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999865

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=100.00  E-value=1.5e-35  Score=267.54  Aligned_cols=180  Identities=20%  Similarity=0.363  Sum_probs=165.8

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      +++||+|+++|||.+.|+..++++|+.++  |+++++| +++ ++.++.|+.+.++..+++.  .+||+|+||||..+..
T Consensus        19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~-~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g~~   94 (236)
T 3bhn_A           19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP-EHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRGIP   94 (236)
T ss_dssp             -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS-EEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTHHH
T ss_pred             CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC-cEEecCCcEEecCcccccc--cCCCEEEEcCCccCHh
Confidence            46899999999999999999999999976  8999999 887 9999999999999999885  7899999999943455


Q ss_pred             hhhcChHHHHHHHHHhhcCC-EEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhh
Q 015523          297 RLQKSRILKKLLKEQKVAGR-IYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLAN  373 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~k-~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~  373 (405)
                      .+..++.+++||  ++.+++ +|++||+|+++|+++|||+||++|+||...+.|++  ..+.++.+|.|||+|||+|+.+
T Consensus        95 ~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G~~a  172 (236)
T 3bhn_A           95 AALQDENFMSAL--KLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLS  172 (236)
T ss_dssp             HHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGG
T ss_pred             hhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCCHHH
Confidence            677899999999  666677 99999999999999999999999999999999986  4668899999999999999999


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHhhcccccCC
Q 015523          374 VIDFALAIVSKFFGHARTRSVAEGLVFEYPR  404 (405)
Q Consensus       374 ~~~~~l~~i~~l~g~~~a~~v~~~l~~~~~r  404 (405)
                      ++||++++|+++.|++.|+++++.|++++.|
T Consensus       173 ~~dlal~lIe~l~G~~~A~~va~~l~~~~~~  203 (236)
T 3bhn_A          173 LLYLVGWLAERLFDSVKRKQIQNQLIPAGQM  203 (236)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHTTTSCTTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhcccCCCC
Confidence            9999999999999999999999999999875

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=1.3e-35  Score=265.05  Aligned_cols=180  Identities=19%  Similarity=0.291  Sum_probs=165.3

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHH--------hCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCC
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILR--------RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG  291 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~--------~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG  291 (405)
                      |+||+|+++|||++.|+..++++|+        +.+|+++++|++++ +++++.|+++.+|..++++++.+||+|+||||
T Consensus         5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG   83 (212)
T 3efe_A            5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPDISLDECTLESKDLLILPGG   83 (212)
T ss_dssp             CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC-CEECTTCCEECCSEEGGGCCCCTTCEEEECCC
T ss_pred             ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC-eEEcCCCCEEecCcCHHHCCccCCCEEEECCC
Confidence            6899999999999999999999999        67899999999998 99999999999999999997779999999999


Q ss_pred             ccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCc-chhhhhhc-----CcccCCcEEEcCCe
Q 015523          292 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHP-SVIGKLTN-----EVVNGTKVVVDGKV  365 (405)
Q Consensus       292 ~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~-~~~~~l~~-----~~~~~~~~v~dg~i  365 (405)
                      ..  ..+..++.+++||+++++++|+|++||+|+++|+++|||+||++|+|| ...+.|++     ..+.++.+|+|||+
T Consensus        84 ~~--~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg~i  161 (212)
T 3efe_A           84 TT--WSEEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANL  161 (212)
T ss_dssp             SC--TTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEETTE
T ss_pred             Cc--cccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEECCE
Confidence            63  235688999999999999999999999999999999999999999996 67666653     35788999999999


Q ss_pred             EecCChhhHHHHHHHHHHHccCHHHHHHHHhhcccccCC
Q 015523          366 ITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR  404 (405)
Q Consensus       366 iTa~g~~~~~~~~l~~i~~l~g~~~a~~v~~~l~~~~~r  404 (405)
                      |||+|+. ++||++++|+++.|. .|+.|++.+.+.+.+
T Consensus       162 iTs~G~~-~~d~al~li~~l~g~-~a~~va~~~~~~~~g  198 (212)
T 3efe_A          162 VTASGIA-PLEFAMEVLKKIDVF-TLDALHSWYNLNKTH  198 (212)
T ss_dssp             EEECTTC-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHC
T ss_pred             EECCCch-HHHHHHHHHHHhcCC-CHHHHHHHHHHHcCC
Confidence            9999996 899999999999997 999999999987654

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=6.7e-35  Score=251.34  Aligned_cols=164  Identities=21%  Similarity=0.367  Sum_probs=155.0

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      .|||+|+++|||++.|+..++++|+.+||+++++|++++ ++.++.|+.+.++..++++++.+||+|+||||. +...+.
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~   79 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIVR   79 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHT
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-EEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHhc
Confidence            479999999999999999999999999999999999998 999999999999999999877789999999997 556677


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHHHH
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDF  377 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~~~  377 (405)
                      .++.+++||+++++++|+|+++|+|+++|+++|+|+||++|+||...+.|++  ..+.++.+|.|||+|||+|+.++.+|
T Consensus        80 ~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~d~  159 (168)
T 3l18_A           80 LNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAW  159 (168)
T ss_dssp             TCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHH
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999987  45678899999999999999999999


Q ss_pred             HHHHHHHc
Q 015523          378 ALAIVSKF  385 (405)
Q Consensus       378 ~l~~i~~l  385 (405)
                      ++++|+++
T Consensus       160 ~l~li~~l  167 (168)
T 3l18_A          160 MREFVKLL  167 (168)
T ss_dssp             HHHHGGGC
T ss_pred             HHHHHHhh
Confidence            99999986

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=4.7e-35  Score=261.48  Aligned_cols=182  Identities=16%  Similarity=0.222  Sum_probs=164.4

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHH--------hcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcC
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLR--------RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG   87 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~--------~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipg   87 (405)
                      +|+||+|+++|||++.|+..+.++|+        +.+|+++++|++++ ++++++|+++.+|..++++++.+||+|+|||
T Consensus         4 ~m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d~~~~~~~~~~~D~livpG   82 (212)
T 3efe_A            4 QTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPDISLDECTLESKDLLILPG   82 (212)
T ss_dssp             -CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC-CEECTTCCEECCSEEGGGCCCCTTCEEEECC
T ss_pred             cccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC-eEEcCCCCEEecCcCHHHCCccCCCEEEECC
Confidence            47799999999999999999999999        67899999999998 9999999999999999999878899999999


Q ss_pred             CchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeecc-CccccCCC-C----ccccCcEEEeC
Q 015523           88 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHP-AFTDKLPT-F----WAVKSNIHVSG  161 (405)
Q Consensus        88 g~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~-~~~~~l~~-~----~~~~~~~v~dg  161 (405)
                      |. .. .+..++.+++||+++++++++|+++|+| .++|+++|+|+|+++|+|| .+.+.|++ +    .+.++++|+||
T Consensus        83 G~-~~-~~~~~~~l~~~l~~~~~~gk~iaaiC~G-~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg  159 (212)
T 3efe_A           83 GT-TW-SEEIHQPILERIGQALKIGTIVAAICGA-TDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDA  159 (212)
T ss_dssp             CS-CT-TSGGGHHHHHHHHHHHHHTCEEEEETHH-HHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEET
T ss_pred             CC-cc-ccccCHHHHHHHHHHHHCCCEEEEEcHH-HHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEEC
Confidence            94 33 3567899999999999999999999996 5589999999999999996 67666665 3    45678999999


Q ss_pred             CeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          162 EVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       162 ~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      |+|||+|+. ++||++++|+++.|. .++++++.+.+.+...
T Consensus       160 ~iiTs~G~~-~~d~al~li~~l~g~-~a~~va~~~~~~~~g~  199 (212)
T 3efe_A          160 NLVTASGIA-PLEFAMEVLKKIDVF-TLDALHSWYNLNKTHK  199 (212)
T ss_dssp             TEEEECTTC-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHCC
T ss_pred             CEEECCCch-HHHHHHHHHHHhcCC-CHHHHHHHHHHHcCCC
Confidence            999999985 999999999999997 9999999999997776

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=100.00  E-value=9.3e-35  Score=262.43  Aligned_cols=183  Identities=20%  Similarity=0.236  Sum_probs=164.1

Q ss_pred             CCCCcEEEEEecCCCchhhHHHHHHHHHhcC--CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh
Q 015523           14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG   91 (405)
Q Consensus        14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~   91 (405)
                      +.+++||+||++|||+..|+..++++|+.++  |++++++ +++ ++++++|+.+.+|..+++.  .+||+|+||||+.+
T Consensus        17 ~~~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~-~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g   92 (236)
T 3bhn_A           17 FQGMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP-EHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRG   92 (236)
T ss_dssp             ---CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS-EEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTH
T ss_pred             cCCCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC-cEEecCCcEEecCcccccc--cCCCEEEEcCCccC
Confidence            4467899999999999999999999999876  8999999 887 9999999999999999874  48999999999434


Q ss_pred             hhccccChHHHHHHHHHHHcCC-EEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCC
Q 015523           92 SVRLRDCEILKKITSKQAEEKR-LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRG  168 (405)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~~~~-~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g  168 (405)
                      ...+..++.+++||  ++++++ +|+++|+| .++|+++|+|+|+++|+||...+.|++  ..+.++.+|+|||+|||+|
T Consensus        93 ~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G-~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G  169 (236)
T 3bhn_A           93 IPAALQDENFMSAL--KLDPSRQLIGSICAG-SFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGG  169 (236)
T ss_dssp             HHHHHTCHHHHHHC--CCCTTTCEEEEETTH-HHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECS
T ss_pred             HhhhccCHHHHHHH--HhCCCCCEEEEEcHH-HHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCC
Confidence            55577899999999  677777 99999996 458999999999999999999999987  3457788999999999999


Q ss_pred             cccHHHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          169 PGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       169 ~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      +.+++||++++|+++.|++.|+++++.|++++.++
T Consensus       170 ~~a~~dlal~lIe~l~G~~~A~~va~~l~~~~~~~  204 (236)
T 3bhn_A          170 CLSLLYLVGWLAERLFDSVKRKQIQNQLIPAGQME  204 (236)
T ss_dssp             GGGHHHHHHHHHHHHSCHHHHHHHHTTTSCTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhcccCCCCc
Confidence            99999999999999999999999999999998877

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=1.4e-34  Score=254.48  Aligned_cols=173  Identities=27%  Similarity=0.366  Sum_probs=157.8

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeec-----CCCcEEeeCCCccCcCCCCccEEEEcCCcc
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA-----SQGVKIIADKSISDAAESVYDLIILPGGVA  293 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~-----~~g~~v~~~~~l~~~~~~~~D~livpgG~~  293 (405)
                      +++||+|+++|||++.|+..++++|+.+||+++++|++++ ++.+     +.|+++.++..++++++.+||+|+||||..
T Consensus         8 ~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~   86 (190)
T 2vrn_A            8 TGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV   86 (190)
T ss_dssp             TTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS-EEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence            3589999999999999999999999999999999999998 8887     779999999999998777899999999974


Q ss_pred             chHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCCh
Q 015523          294 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGL  371 (405)
Q Consensus       294 ~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~  371 (405)
                      ....+..++.+++||+++++++|+|+++|+|+++|+++|||+||++|+||...+.|++  ..+.+..+++|||+|||+|+
T Consensus        87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~g~  166 (190)
T 2vrn_A           87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKP  166 (190)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECSSG
T ss_pred             hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcCCh
Confidence            5666778999999999999999999999999999999999999999999999999886  45666677889999999999


Q ss_pred             hhHHHHHHHHHHHc-cCHHHHH
Q 015523          372 ANVIDFALAIVSKF-FGHARTR  392 (405)
Q Consensus       372 ~~~~~~~l~~i~~l-~g~~~a~  392 (405)
                      .++.+|++++++++ .|++.|+
T Consensus       167 ~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          167 DDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             GGHHHHHHHHHHHHHHCCCGGG
T ss_pred             hhHHHHHHHHHHHHhccccccc
Confidence            99999999999999 8877654

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=1.4e-34  Score=249.42  Aligned_cols=165  Identities=22%  Similarity=0.332  Sum_probs=153.0

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      ++|||+|+++|||+..|+..+.++|++++|+++++|++++ ++++++|+.+.++..++++++.+||+|+||||+ +...+
T Consensus         1 ~~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~   78 (168)
T 3l18_A            1 ASMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIV   78 (168)
T ss_dssp             CCCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHH
T ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-EEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHh
Confidence            3579999999999999999999999999999999999997 999999999999999999987789999999995 55667


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccHH
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSF  173 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~~  173 (405)
                      ..++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++  ..++++.+|+|||+|||+|+.++.
T Consensus        79 ~~~~~l~~~l~~~~~~~k~i~aiC~G-~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~  157 (168)
T 3l18_A           79 RLNEKAVMITRRMFEDDKPVASICHG-PQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLY  157 (168)
T ss_dssp             TTCHHHHHHHHHHHHTTCCEEEETTT-HHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHH
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEECHh-HHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHH
Confidence            78999999999999999999999996 558999999999999999999998887  456788899999999999999999


Q ss_pred             HHHHHHHHHh
Q 015523          174 EFALCLVEQL  183 (405)
Q Consensus       174 ~~~l~ii~~~  183 (405)
                      ||++++|+++
T Consensus       158 d~~l~li~~l  167 (168)
T 3l18_A          158 AWMREFVKLL  167 (168)
T ss_dssp             HHHHHHGGGC
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=2.1e-34  Score=253.35  Aligned_cols=174  Identities=22%  Similarity=0.290  Sum_probs=157.2

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEe-----ccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA-----SSGTRLVADTSISNCSHQVFDLIALPGGM   89 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~-----~~g~~v~~~~~~~~~~~~~~d~liipgg~   89 (405)
                      ++++||+||++|||+..|+..+.++|++++|++++++++++ ++++     ++|+.+.++..++++++.+||+||||||.
T Consensus         7 ~~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~   85 (190)
T 2vrn_A            7 LTGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGT   85 (190)
T ss_dssp             CTTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS-EEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCT
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccCCcEEeCCCChhhCChhhCCEEEECCCc
Confidence            45689999999999999999999999999999999999998 8988     78999999999998876789999999995


Q ss_pred             hhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCC
Q 015523           90 PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSR  167 (405)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~  167 (405)
                      .....+..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.|++  ..+.++++++|||+|||+
T Consensus        86 ~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~-~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~  164 (190)
T 2vrn_A           86 VNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP-WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSR  164 (190)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTT-HHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECS
T ss_pred             hhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhH-HHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcC
Confidence            455667789999999999999999999999965 58999999999999999999888877  566777778899999999


Q ss_pred             CcccHHHHHHHHHHHh-cChHHHH
Q 015523          168 GPGTSFEFALCLVEQL-FGESVAK  190 (405)
Q Consensus       168 g~~~~~~~~l~ii~~~-~g~~~a~  190 (405)
                      |+.++.+|++++|+++ .|++.|+
T Consensus       165 g~~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          165 KPDDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             SGGGHHHHHHHHHHHHHHCCCGGG
T ss_pred             ChhhHHHHHHHHHHHHhccccccc
Confidence            9999999999999999 8887654

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=3.1e-34  Score=272.87  Aligned_cols=178  Identities=25%  Similarity=0.405  Sum_probs=165.4

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCce-eecCCCc-EEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ-IVASQGV-KIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~-v~~~~g~-~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      +|+||+|+++|||.+.|+..|+++|+.+||+++++|++++ + +.++.|+ ++.++..++++++.+||+|+||||. +..
T Consensus         9 ~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g-~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g~~   86 (365)
T 3fse_A            9 GKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN-EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-APD   86 (365)
T ss_dssp             --CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSS-CCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-HHH
T ss_pred             CceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCC-ceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-chh
Confidence            5789999999999999999999999999999999999998 7 9999999 9999999999877789999999997 566


Q ss_pred             hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhH
Q 015523          297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANV  374 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~  374 (405)
                      .+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++  ..+.++.+|.|||+|||+|+.++
T Consensus        87 ~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~~a~  166 (365)
T 3fse_A           87 KMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGDL  166 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGH
T ss_pred             hccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCHHHH
Confidence            6788999999999999999999999999999999999999999999999999986  56778899999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHhhc
Q 015523          375 IDFALAIVSKFFGHARTRSVAEGL  398 (405)
Q Consensus       375 ~~~~l~~i~~l~g~~~a~~v~~~l  398 (405)
                      .+|++++|+++.|.+.|+++++..
T Consensus       167 ~d~al~lIe~L~g~~~A~~lA~~~  190 (365)
T 3fse_A          167 AIFTTAILSRLGYGGKDAALPDEK  190 (365)
T ss_dssp             HHHHHHHHHHTTCCCSSSCCCCTT
T ss_pred             HHHHHHHHHHhcCchHHHHHhhhh
Confidence            999999999999998888877654

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=100.00  E-value=5.6e-34  Score=250.07  Aligned_cols=177  Identities=21%  Similarity=0.283  Sum_probs=159.6

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHh-CCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      |+||+|+++|||++.|+..+++.|++ .+|+++++|++++ +++++.|+.+.++..++++++.+||+|+||||..  ...
T Consensus         1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~-~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~--~~~   77 (188)
T 2fex_A            1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS--WEK   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH--HHH
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC-ceeeCCCcEEeccccHHHCCcccCCEEEECCCCc--ccc
Confidence            57999999999999999999999999 9999999999998 9999999999999999998767999999999963  334


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc-----CcccCCc-EEEcCCeEecCChh
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-----EVVNGTK-VVVDGKVITSRGLA  372 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~-----~~~~~~~-~v~dg~iiTa~g~~  372 (405)
                      ..++.+++||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++     ..+.++. +|.|||+|||+|+.
T Consensus        78 ~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~  157 (188)
T 2fex_A           78 GTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA  157 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTTC
T ss_pred             cccHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCcc
Confidence            67899999999999999999999999999999999999999999986665443     2567788 99999999999996


Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHhhccccc
Q 015523          373 NVIDFALAIVSKFFGHARTRSVAEGLVFEY  402 (405)
Q Consensus       373 ~~~~~~l~~i~~l~g~~~a~~v~~~l~~~~  402 (405)
                       ++||++++|+++.|.+.++  ++++.+..
T Consensus       158 -~~d~al~lv~~l~~~~~~~--~~~~~~~~  184 (188)
T 2fex_A          158 -PVSFAVEILKSLGLFGPEA--EAELQIFA  184 (188)
T ss_dssp             -HHHHHHHHHHHTTCCSHHH--HHHHGGGG
T ss_pred             -HHHHHHHHHHHccCCCHHH--HHHHHHHH
Confidence             7999999999999999887  77766643

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=3.6e-33  Score=245.72  Aligned_cols=170  Identities=21%  Similarity=0.330  Sum_probs=157.2

Q ss_pred             cccCCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCce-eecCCCc-EEeeCCCccCcCCCCccEEEEcCCc
Q 015523          215 WFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ-IVASQGV-KIIADKSISDAAESVYDLIILPGGV  292 (405)
Q Consensus       215 ~~~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~-v~~~~g~-~v~~~~~l~~~~~~~~D~livpgG~  292 (405)
                      +...+++||+|+++|||++.|+..+.++|+++||++++++++++ + +.++.|+ .+.++..++++++.+||+|+||||.
T Consensus        18 ~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~   96 (193)
T 1oi4_A           18 KKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH   96 (193)
T ss_dssp             TTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTT-CEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT
T ss_pred             hhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-cceecCCCCeEEECCCChHHCCcccCCEEEECCCc
Confidence            34456789999999999999999999999999999999999998 7 9999999 9999999998877789999999995


Q ss_pred             cchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCC-eEecC
Q 015523          293 AGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGK-VITSR  369 (405)
Q Consensus       293 ~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~-iiTa~  369 (405)
                       +...+..++.+++||+++++++|+|++||+|+++|+++|+|+||++|+||...+.|++  ..+.++.+|+||| +|||+
T Consensus        97 -~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiTs~  175 (193)
T 1oi4_A           97 -SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSR  175 (193)
T ss_dssp             -HHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEES
T ss_pred             -CHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEECC
Confidence             5666778899999999999999999999999999999999999999999999999986  4677788899999 99999


Q ss_pred             ChhhHHHHHHHHHHHcc
Q 015523          370 GLANVIDFALAIVSKFF  386 (405)
Q Consensus       370 g~~~~~~~~l~~i~~l~  386 (405)
                      |+.++.+|++++|+++.
T Consensus       176 g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          176 TPDDLPAFNREALRLLG  192 (193)
T ss_dssp             SGGGHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHhh
Confidence            99999999999999874

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=8.5e-34  Score=251.54  Aligned_cols=175  Identities=18%  Similarity=0.246  Sum_probs=155.9

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhC-CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      |+||+|+++|||++.|+..+.+.|.++ +|+++++|++++  ++++.|+++.++..++++ +.+||+|+||||. +... 
T Consensus         3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~--V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~-~~~~-   77 (206)
T 3f5d_A            3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLE-PANFNLLVMIGGD-SWSN-   77 (206)
T ss_dssp             CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE--EEBTTSCEEECSEETTSS-CSCCSEEEECCBS-CCCC-
T ss_pred             ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC--EEecCCcEEecCcChhhC-CcCCCEEEEcCCC-Chhh-
Confidence            689999999999999999999999998 999999999985  999999999999999998 4689999999997 3333 


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchh-hhhh----cCcccCCcEEEcCCeEecCChhh
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVI-GKLT----NEVVNGTKVVVDGKVITSRGLAN  373 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~-~~l~----~~~~~~~~~v~dg~iiTa~g~~~  373 (405)
                       .++.+++||+++++++++|++||+|+++|+++|||+||++|+||... ..++    ...+.++++|+|||+|||+|+. 
T Consensus        78 -~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~a-  155 (206)
T 3f5d_A           78 -DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA-  155 (206)
T ss_dssp             -CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTTC-
T ss_pred             -cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCch-
Confidence             89999999999999999999999999999999999999999998321 1111    2456788999999999999996 


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHhhccccc
Q 015523          374 VIDFALAIVSKFFGHARTRSVAEGLVFEY  402 (405)
Q Consensus       374 ~~~~~l~~i~~l~g~~~a~~v~~~l~~~~  402 (405)
                      ++||++++|+++ +.+.|++|++.|.+.+
T Consensus       156 ~id~al~li~~l-~~~~a~~va~~~~~~~  183 (206)
T 3f5d_A          156 PIEFTNLILEMI-DFDTPENIEKMMYMNR  183 (206)
T ss_dssp             HHHHHHHHHHHT-TCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CcchHHHHHHHhhhhh
Confidence            899999999975 5689999999998754

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=4.2e-34  Score=272.00  Aligned_cols=180  Identities=23%  Similarity=0.299  Sum_probs=163.7

Q ss_pred             CCCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCce-eEeccCc-EEecCcccCCCCCCcccEEEEcCCchh
Q 015523           14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE-VEASSGT-RLVADTSISNCSHQVFDLIALPGGMPG   91 (405)
Q Consensus        14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~-v~~~~g~-~v~~~~~~~~~~~~~~d~liipgg~~~   91 (405)
                      +.+++||+||++|||+..|+..++++|++++|+++++|++++ + +++++|+ .+.+|..++++++.+||+|+||||. +
T Consensus         7 ~~~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g-~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g   84 (365)
T 3fse_A            7 NSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN-EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-A   84 (365)
T ss_dssp             ----CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSS-CCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-H
T ss_pred             CCCceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCC-ceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-c
Confidence            456789999999999999999999999999999999999998 7 9999999 9999999999987789999999995 5


Q ss_pred             hhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCc
Q 015523           92 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGP  169 (405)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~  169 (405)
                      ...+..++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++  ..+.+.++|+|||+|||+|+
T Consensus        85 ~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G-~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~  163 (365)
T 3fse_A           85 PDKMRRNPNTVRFVQEAMEQGKLVAAVCHG-PQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREP  163 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCEEEEETTT-HHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSG
T ss_pred             hhhccCCHHHHHHHHHHHHCCCEEEEECHH-HHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCH
Confidence            666778999999999999999999999996 558999999999999999999988886  67778899999999999999


Q ss_pred             ccHHHHHHHHHHHhcChHHHHHHHHhc
Q 015523          170 GTSFEFALCLVEQLFGESVAKEIGELL  196 (405)
Q Consensus       170 ~~~~~~~l~ii~~~~g~~~a~~~a~~l  196 (405)
                      .++.||++++|+++.|.+.|+++|+..
T Consensus       164 ~a~~d~al~lIe~L~g~~~A~~lA~~~  190 (365)
T 3fse_A          164 GDLAIFTTAILSRLGYGGKDAALPDEK  190 (365)
T ss_dssp             GGHHHHHHHHHHHTTCCCSSSCCCCTT
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHhhhh
Confidence            999999999999999998888887443

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=100.00  E-value=5.4e-33  Score=243.76  Aligned_cols=176  Identities=19%  Similarity=0.242  Sum_probs=156.2

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHh-cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      |+||+|+++|||++.|+..+.++|++ .+|+++++|++++ ++++++|+.+.++..++++++.+||+|+||||. .. ..
T Consensus         1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~-~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~-~~-~~   77 (188)
T 2fex_A            1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL-SW-EK   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBS-HH-HH
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC-ceeeCCCcEEeccccHHHCCcccCCEEEECCCC-cc-cc
Confidence            46999999999999999999999999 9999999999998 999999999999999999887789999999995 22 34


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-C----ccccCc-EEEeCCeEcCCCc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F----WAVKSN-IHVSGEVTTSRGP  169 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~----~~~~~~-~v~dg~iiT~~g~  169 (405)
                      ..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||.....+++ +    .+.++. +|+|||+|||+|+
T Consensus        78 ~~~~~l~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~  156 (188)
T 2fex_A           78 GTAADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS  156 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHH-HHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTT
T ss_pred             cccHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCc
Confidence            578899999999999999999999965 58999999999999999986666655 3    456778 9999999999998


Q ss_pred             ccHHHHHHHHHHHhcChHHHHHHHHhcccc
Q 015523          170 GTSFEFALCLVEQLFGESVAKEIGELLLMH  199 (405)
Q Consensus       170 ~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~  199 (405)
                      . ++||++++|+++.|.+.++  ++.+.+-
T Consensus       157 ~-~~d~al~lv~~l~~~~~~~--~~~~~~~  183 (188)
T 2fex_A          157 A-PVSFAVEILKSLGLFGPEA--EAELQIF  183 (188)
T ss_dssp             C-HHHHHHHHHHHTTCCSHHH--HHHHGGG
T ss_pred             c-HHHHHHHHHHHccCCCHHH--HHHHHHH
Confidence            6 8999999999999999886  6555443

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=8.4e-33  Score=245.14  Aligned_cols=179  Identities=19%  Similarity=0.205  Sum_probs=156.8

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhc-CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~-~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      +|+||+|+++|||++.|+..+.++|+++ +|+++++|++++  +++++|+++.+|..+++++ .+||+|+||||. +...
T Consensus         2 ~m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~--V~~~~G~~v~~d~~l~~~~-~~~D~livpGG~-~~~~   77 (206)
T 3f5d_A            2 SLKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLEP-ANFNLLVMIGGD-SWSN   77 (206)
T ss_dssp             -CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE--EEBTTSCEEECSEETTSSC-SCCSEEEECCBS-CCCC
T ss_pred             CccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC--EEecCCcEEecCcChhhCC-cCCCEEEEcCCC-Chhh
Confidence            3679999999999999999999999998 999999999985  9999999999999999884 689999999995 4443


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCcc-ccCCC----CccccCcEEEeCCeEcCCCc
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFT-DKLPT----FWAVKSNIHVSGEVTTSRGP  169 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~-~~l~~----~~~~~~~~v~dg~iiT~~g~  169 (405)
                        .++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++||||... ..+..    ..+.++++|+|||+|||+|+
T Consensus        78 --~~~~l~~~l~~~~~~gk~iaaiC~G~-~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~  154 (206)
T 3f5d_A           78 --DNKKLLHFVKTAFQKNIPIAAICGAV-DFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGT  154 (206)
T ss_dssp             --CCHHHHHHHHHHHHTTCCEEEETHHH-HHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTT
T ss_pred             --cCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCc
Confidence              88999999999999999999999964 589999999999999999421 11211    45678899999999999998


Q ss_pred             ccHHHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          170 GTSFEFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       170 ~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      . ++||++++|+++ +.+.|+++++.|.+.+...
T Consensus       155 a-~id~al~li~~l-~~~~a~~va~~~~~~~~g~  186 (206)
T 3f5d_A          155 A-PIEFTNLILEMI-DFDTPENIEKMMYMNRYGF  186 (206)
T ss_dssp             C-HHHHHHHHHHHT-TCSCHHHHHHHHHHHHHCH
T ss_pred             h-HHHHHHHHHHHh-CcchHHHHHHHhhhhhccc
Confidence            6 999999999975 5789999999999987655

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=1.1e-32  Score=242.62  Aligned_cols=167  Identities=21%  Similarity=0.250  Sum_probs=153.7

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCce-eEeccCc-EEecCcccCCCCCCcccEEEEcCCchhh
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE-VEASSGT-RLVADTSISNCSHQVFDLIALPGGMPGS   92 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~-v~~~~g~-~v~~~~~~~~~~~~~~d~liipgg~~~~   92 (405)
                      ++++||+||++|||+..|+..+.++|+++++++++++++++ + +++++|+ .+.++..+++.++.+||+|+|||| .+.
T Consensus        21 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG-~~~   98 (193)
T 1oi4_A           21 GLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG-HSP   98 (193)
T ss_dssp             TCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTT-CEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB-THH
T ss_pred             ccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-cceecCCCCeEEECCCChHHCCcccCCEEEECCC-cCH
Confidence            35679999999999999999999999999999999999998 7 9999999 999999999887678999999999 456


Q ss_pred             hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCC-eEcCCCc
Q 015523           93 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGE-VTTSRGP  169 (405)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~-iiT~~g~  169 (405)
                      ..+..++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.|++  ..+.++++|+||| +|||+|+
T Consensus        99 ~~l~~~~~l~~~l~~~~~~gk~i~aIC~G-~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiTs~g~  177 (193)
T 1oi4_A           99 DYLRGDNRFVTFTRDFVNSGKPVFAICHG-PQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTP  177 (193)
T ss_dssp             HHHTTSHHHHHHHHHHHHTTCCEEEETTT-HHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSG
T ss_pred             HHhhhCHHHHHHHHHHHHcCCEEEEECHH-HHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEECCCc
Confidence            66777899999999999999999999996 558999999999999999999888876  6777888999999 9999999


Q ss_pred             ccHHHHHHHHHHHhc
Q 015523          170 GTSFEFALCLVEQLF  184 (405)
Q Consensus       170 ~~~~~~~l~ii~~~~  184 (405)
                      .++.||++++|+++.
T Consensus       178 ~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          178 DDLPAFNREALRLLG  192 (193)
T ss_dssp             GGHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHhh
Confidence            999999999999874

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.98  E-value=4.3e-32  Score=235.31  Aligned_cols=160  Identities=19%  Similarity=0.328  Sum_probs=146.1

Q ss_pred             cCEEEEEeCC---C---CcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCc--CCCCccEEEEcCC
Q 015523          220 MPRVLIPIAN---G---SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA--AESVYDLIILPGG  291 (405)
Q Consensus       220 ~~~V~il~~~---g---~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~--~~~~~D~livpgG  291 (405)
                      ++||+|+++|   |   |++.|+..      +.+|+++++|++++.+++++.|+++.++..++++  ++.+||+|+||||
T Consensus         2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG   75 (175)
T 3cne_A            2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCG   75 (175)
T ss_dssp             CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECC
T ss_pred             CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCC
Confidence            4799999999   9   88888776      6899999999996339999999999999999987  7789999999999


Q ss_pred             --ccchHhhh---cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhcCcccCCcEEEcCCeE
Q 015523          292 --VAGAERLQ---KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVI  366 (405)
Q Consensus       292 --~~~~~~~~---~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~ii  366 (405)
                        ..+...+.   .++.+++||+++++++|+|++||+|+++|+++|||+||++|+||...+.|++..+.++.+|.|||+|
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~Dg~ii  155 (175)
T 3cne_A           76 DAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEIDGNFF  155 (175)
T ss_dssp             TTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEEETTEE
T ss_pred             cCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEEeCCEE
Confidence              53444455   7889999999999999999999999999999999999999999999999988778899999999999


Q ss_pred             ecCChhhHHHHHHHHHHHc
Q 015523          367 TSRGLANVIDFALAIVSKF  385 (405)
Q Consensus       367 Ta~g~~~~~~~~l~~i~~l  385 (405)
                      ||+|+.+++||++++|+++
T Consensus       156 Ts~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          156 TAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             EESSGGGGGGTHHHHHHHH
T ss_pred             eCCChHHHHHHHHHHHHHh
Confidence            9999999999999999986

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.97  E-value=3.3e-31  Score=229.78  Aligned_cols=160  Identities=21%  Similarity=0.270  Sum_probs=143.3

Q ss_pred             CcEEEEEecC---C---CchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCC--CCCcccEEEEcCC
Q 015523           17 ALNVLVPVGF---G---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC--SHQVFDLIALPGG   88 (405)
Q Consensus        17 ~~ki~ill~~---g---~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~--~~~~~d~liipgg   88 (405)
                      ++||+|+++|   |   |++.|+..      +++|++++++++++.++++++|+.+.++..+++.  ++.+||+|+||||
T Consensus         2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG   75 (175)
T 3cne_A            2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCG   75 (175)
T ss_dssp             CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECC
T ss_pred             CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCC
Confidence            4799999999   9   88877766      6799999999996339999999999999999987  5568999999999


Q ss_pred             --chhhhccc---cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCcEEEeCCe
Q 015523           89 --MPGSVRLR---DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEV  163 (405)
Q Consensus        89 --~~~~~~~~---~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~i  163 (405)
                        +++...+.   .++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.|++..+.++.+|+|||+
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~-~~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~Dg~i  154 (175)
T 3cne_A           76 DAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA-MMFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEIDGNF  154 (175)
T ss_dssp             TTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHH-HHHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEEETTE
T ss_pred             cCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEEeCCE
Confidence              54455555   67899999999999999999999965 5899999999999999999999998866778899999999


Q ss_pred             EcCCCcccHHHHHHHHHHHh
Q 015523          164 TTSRGPGTSFEFALCLVEQL  183 (405)
Q Consensus       164 iT~~g~~~~~~~~l~ii~~~  183 (405)
                      |||+|+.++.||++++|+++
T Consensus       155 iTs~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          155 FTAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             EEESSGGGGGGTHHHHHHHH
T ss_pred             EeCCChHHHHHHHHHHHHHh
Confidence            99999999999999999986

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.97  E-value=1.1e-31  Score=242.08  Aligned_cols=169  Identities=22%  Similarity=0.268  Sum_probs=149.5

Q ss_pred             CcCEEEEEeC----------CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCC--------C-----cEEeeCCCc
Q 015523          219 RMPRVLIPIA----------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ--------G-----VKIIADKSI  275 (405)
Q Consensus       219 ~~~~V~il~~----------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~--------g-----~~v~~~~~l  275 (405)
                      +++||+|+++          +||...|+..++++|+++||+++++|++++ ++.+..        |     .++.++..+
T Consensus         4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~l   82 (224)
T 1u9c_A            4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARL   82 (224)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred             CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC-ccccCccccccHHHHHhhhhHhhcCCCCh
Confidence            3479999999          999999999999999999999999999997 776553        3     678889899


Q ss_pred             cCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC------CCCCCeeecCcchhhh-
Q 015523          276 SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKAKKATAHPSVIGK-  348 (405)
Q Consensus       276 ~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG------lL~g~~~t~~~~~~~~-  348 (405)
                      +++++.+||+|+||||......+..++.+++||+++++++|+|++||+|+++|+++|      ||+||++|+||...+. 
T Consensus        83 ~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~T~~~~~~~~~  162 (224)
T 1u9c_A           83 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEERE  162 (224)
T ss_dssp             CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred             HHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcEEecCCCHHHhh
Confidence            988777999999999975445678899999999999999999999999999999999      9999999999986653 


Q ss_pred             --------------hhc--CcccCCc-----EEEcCCeEecCChhhHHHHHHHHHHHccCH
Q 015523          349 --------------LTN--EVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKFFGH  388 (405)
Q Consensus       349 --------------l~~--~~~~~~~-----~v~dg~iiTa~g~~~~~~~~l~~i~~l~g~  388 (405)
                                    |++  ..+.+..     +|+|||+|||+|+.++++|++++|+++.|+
T Consensus       163 ~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~  223 (224)
T 1u9c_A          163 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  223 (224)
T ss_dssp             HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             ccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence                          443  3455554     999999999999999999999999999885

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.97  E-value=5.2e-31  Score=237.69  Aligned_cols=169  Identities=25%  Similarity=0.290  Sum_probs=146.6

Q ss_pred             CcEEEEEec----------CCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEecc--------C-----cEEecCcccC
Q 015523           17 ALNVLVPVG----------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS--------G-----TRLVADTSIS   73 (405)
Q Consensus        17 ~~ki~ill~----------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~--------g-----~~v~~~~~~~   73 (405)
                      ++||+|+++          +||+..|+..++++|++++|+++++|++++ +++++.        |     ..+.++..++
T Consensus         5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~   83 (224)
T 1u9c_A            5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARLS   83 (224)
T ss_dssp             CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEECC
T ss_pred             CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC-ccccCccccccHHHHHhhhhHhhcCCCChH
Confidence            369999999          999999999999999999999999999997 776553        3     5688888898


Q ss_pred             CCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC------CCCCcceeeccCcccc-
Q 015523           74 NCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLRRKQITCHPAFTDK-  146 (405)
Q Consensus        74 ~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag------ll~g~~~t~~~~~~~~-  146 (405)
                      ++++.+||+|+||||+.....+..++.+.+||+++++++|+|++||+|+. +|+++|      +|+|+++|+||...+. 
T Consensus        84 ~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~-~La~ag~~~g~~lL~Gr~~T~~~~~~~~~  162 (224)
T 1u9c_A           84 KDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSFTDEEERE  162 (224)
T ss_dssp             GGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred             HcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHH-HHHHccccCCCceecCcEEecCCCHHHhh
Confidence            88766899999999964344578899999999999999999999999755 899999      9999999999986553 


Q ss_pred             --------------CCC--CccccCc-----EEEeCCeEcCCCcccHHHHHHHHHHHhcChH
Q 015523          147 --------------LPT--FWAVKSN-----IHVSGEVTTSRGPGTSFEFALCLVEQLFGES  187 (405)
Q Consensus       147 --------------l~~--~~~~~~~-----~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~  187 (405)
                                    |++  ..+++.+     +|+|||+|||+|+.++.+|++++|+++.|++
T Consensus       163 ~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~~  224 (224)
T 1u9c_A          163 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEERE  224 (224)
T ss_dssp             HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhccC
Confidence                          333  3455554     9999999999999999999999999998863

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.96  E-value=6.7e-30  Score=231.81  Aligned_cols=171  Identities=16%  Similarity=0.232  Sum_probs=145.5

Q ss_pred             cCEEEEEeC------------CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceee---------------------cCCC
Q 015523          220 MPRVLIPIA------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV---------------------ASQG  266 (405)
Q Consensus       220 ~~~V~il~~------------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~---------------------~~~g  266 (405)
                      |+||+|++.            +||++.|+..|+++|+++|++|+++|++++.++.                     ++.+
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   82 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN   82 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence            679999986            4899999999999999999999999999873231                     1234


Q ss_pred             cEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc-------CCCCCCee
Q 015523          267 VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-------GLLKAKKA  339 (405)
Q Consensus       267 ~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a-------GlL~g~~~  339 (405)
                      ..+.++..++++++.+||+|+||||++.+..+..++.+.+||+++++++|+|++||+|+++|+++       |||+||++
T Consensus        83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~~  162 (244)
T 3kkl_A           83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAI  162 (244)
T ss_dssp             HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEE
T ss_pred             HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCcee
Confidence            56777888999988999999999998555778899999999999999999999999999999999       99999999


Q ss_pred             ecCcchhhh-------------------hhc--CcccC------CcEEEcCCeEecCChhhHHHHHHHHHHHccCHHH
Q 015523          340 TAHPSVIGK-------------------LTN--EVVNG------TKVVVDGKVITSRGLANVIDFALAIVSKFFGHAR  390 (405)
Q Consensus       340 t~~~~~~~~-------------------l~~--~~~~~------~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~g~~~  390 (405)
                      |+||...+.                   +++  ..+.+      ..+|+|||+||++|+.++.+|++++|+.+.+.+.
T Consensus       163 T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~~  240 (244)
T 3kkl_A          163 TGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVEH  240 (244)
T ss_dssp             CCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC---
T ss_pred             cCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhhh
Confidence            999987543                   222  34444      5899999999999999999999999999998764

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.96  E-value=6.2e-30  Score=233.12  Aligned_cols=168  Identities=17%  Similarity=0.216  Sum_probs=146.3

Q ss_pred             cCEEEEEeC------------CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeec----------------------CC
Q 015523          220 MPRVLIPIA------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA----------------------SQ  265 (405)
Q Consensus       220 ~~~V~il~~------------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~----------------------~~  265 (405)
                      |+||+|++.            +|+...|+..|+++|+++||+++++|++++ +...                      +.
T Consensus         3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (243)
T 1rw7_A            3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF   81 (243)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCcCcccccccccChHHHHHHHhhhHHH
Confidence            579999996            789999999999999999999999999987 5321                      23


Q ss_pred             CcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC-------CCCCCe
Q 015523          266 GVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-------LLKAKK  338 (405)
Q Consensus       266 g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG-------lL~g~~  338 (405)
                      |..+.++..++++++.+||+|+||||+..+..+..++.+++||+++++++|+|++||+|+++|+++|       ||+||+
T Consensus        82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~~  161 (243)
T 1rw7_A           82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKS  161 (243)
T ss_dssp             HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred             HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCcE
Confidence            6678888899998778999999999986566788899999999999999999999999999999999       999999


Q ss_pred             eecCcchhhh-------------------hh--cCccc------CCcEEEcCCeEecCChhhHHHHHHHHHHHccCH
Q 015523          339 ATAHPSVIGK-------------------LT--NEVVN------GTKVVVDGKVITSRGLANVIDFALAIVSKFFGH  388 (405)
Q Consensus       339 ~t~~~~~~~~-------------------l~--~~~~~------~~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~g~  388 (405)
                      +|+||...+.                   ++  ...+.      +..+|+|||+|||+|+.++++|++++|+++-..
T Consensus       162 ~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~~  238 (243)
T 1rw7_A          162 ITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKNH  238 (243)
T ss_dssp             ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC--
T ss_pred             EeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhhc
Confidence            9999986664                   33  23444      788999999999999999999999999988543

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.96  E-value=7.4e-29  Score=242.33  Aligned_cols=170  Identities=22%  Similarity=0.303  Sum_probs=153.7

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCc---------------eeecCCCcEEeeCCCccCcCCCCc
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST---------------QIVASQGVKIIADKSISDAAESVY  283 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~---------------~v~~~~g~~v~~~~~l~~~~~~~~  283 (405)
                      +++||+|+++|||++.|+..++++|+++|++++++|++++.               .+.++.|..+.++..++++++.+|
T Consensus        11 ~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   90 (396)
T 3uk7_A           11 NSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKY   90 (396)
T ss_dssp             CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGC
T ss_pred             cCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccC
Confidence            46899999999999999999999999999999999998651               245677999999999999888899


Q ss_pred             cEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccC----C
Q 015523          284 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG----T  357 (405)
Q Consensus       284 D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~----~  357 (405)
                      |+|+||||. +...+..++.+++||+++++++|+|+++|+|+++|+++|||+||++|+||...+.|++  ..+.+    +
T Consensus        91 D~livpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~  169 (396)
T 3uk7_A           91 DGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPD  169 (396)
T ss_dssp             SEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTT
T ss_pred             CEEEECCCc-chhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCc
Confidence            999999997 4566788999999999999999999999999999999999999999999999999875  23333    3


Q ss_pred             cEEEcCCeEecCChhhHHHHHHHHHHHccCHH
Q 015523          358 KVVVDGKVITSRGLANVIDFALAIVSKFFGHA  389 (405)
Q Consensus       358 ~~v~dg~iiTa~g~~~~~~~~l~~i~~l~g~~  389 (405)
                      .+|.|||+|||+|+.++.+|++++|+++.|++
T Consensus       170 ~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~  201 (396)
T 3uk7_A          170 VCVVDGSLITAATYEGHPEFIQLFVKALGGKI  201 (396)
T ss_dssp             CEEEETTEEEESSGGGHHHHHHHHHHHTTCEE
T ss_pred             ceEecCCEEEecCcccHHHHHHHHHHHHhccc
Confidence            48999999999999999999999999999975

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.96  E-value=3.6e-29  Score=227.00  Aligned_cols=171  Identities=15%  Similarity=0.181  Sum_probs=142.9

Q ss_pred             CcEEEEEec------------CCCchhhHHHHHHHHHhcCCEEEEEecCCCceeE---------------------eccC
Q 015523           17 ALNVLVPVG------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---------------------ASSG   63 (405)
Q Consensus        17 ~~ki~ill~------------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~---------------------~~~g   63 (405)
                      |+||+|++.            +||+..|+..|+++|+++|++|+++|++++.++.                     ++.+
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   82 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN   82 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence            578999986            3888999999999999999999999999863231                     1234


Q ss_pred             cEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc-------CCCCCcc
Q 015523           64 TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-------GLLRRKQ  136 (405)
Q Consensus        64 ~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a-------gll~g~~  136 (405)
                      ..+.++.+++++++.+||+|+||||+.....+..++.+.+||+++++++|+|++||+|++ +|+++       |+|+|++
T Consensus        83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~-~La~a~~~~~g~gll~G~~  161 (244)
T 3kkl_A           83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPL-LFDGLIDIKTTRPLIEGKA  161 (244)
T ss_dssp             HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTSSBTTTTCE
T ss_pred             HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHhhccccCCceeCCce
Confidence            567788889999888999999999964456788999999999999999999999999766 79988       9999999


Q ss_pred             eeeccCccc-------------------cCCC--Ccccc------CcEEEeCCeEcCCCcccHHHHHHHHHHHhcChHH
Q 015523          137 ITCHPAFTD-------------------KLPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESV  188 (405)
Q Consensus       137 ~t~~~~~~~-------------------~l~~--~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~  188 (405)
                      +|+||...+                   .+++  ..+++      +.+|+|||+|||+|+.++.+|++++|+++.+.+.
T Consensus       162 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~~  240 (244)
T 3kkl_A          162 ITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVEH  240 (244)
T ss_dssp             ECCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC---
T ss_pred             ecCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhhh
Confidence            999998643                   2333  45555      4799999999999999999999999999988764

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.96  E-value=1.7e-29  Score=235.44  Aligned_cols=170  Identities=19%  Similarity=0.201  Sum_probs=149.0

Q ss_pred             cCEEEEEeCC--------------CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecC--------------C---CcE
Q 015523          220 MPRVLIPIAN--------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS--------------Q---GVK  268 (405)
Q Consensus       220 ~~~V~il~~~--------------g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~--------------~---g~~  268 (405)
                      .+||+|++.+              ||.+.|+..|+++|+++||+|+++|++++ ++...              .   |..
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~-~v~~d~~s~~~~~~~~~~~~~~~g~~  126 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKSL  126 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cccccccccccccHHHHHHHHhccce
Confidence            4699999985              79999999999999999999999999998 76532              1   778


Q ss_pred             EeeCCCccCc-----CCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC----CCCCCee
Q 015523          269 IIADKSISDA-----AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG----LLKAKKA  339 (405)
Q Consensus       269 v~~~~~l~~~-----~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG----lL~g~~~  339 (405)
                      +.++..++++     ++.+||+||||||++....+..++.+++||+++++++|+|++||+|+++|+++|    ||+||++
T Consensus       127 l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~GLL~Gr~~  206 (291)
T 1n57_A          127 FRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSI  206 (291)
T ss_dssp             HHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCEE
T ss_pred             ecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhcccCccCCCCEE
Confidence            8888888874     568999999999975444678899999999999999999999999999988885    9999999


Q ss_pred             ecCcchhhhhhc---------------------Cccc----CCcEEEcCCeEecCChhhHHHHHHHHHHHccCHHH
Q 015523          340 TAHPSVIGKLTN---------------------EVVN----GTKVVVDGKVITSRGLANVIDFALAIVSKFFGHAR  390 (405)
Q Consensus       340 t~~~~~~~~l~~---------------------~~~~----~~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~g~~~  390 (405)
                      |+||...+.+.+                     ..+.    +..+|+|||+|||+|+.++++|++++|+++.|.+.
T Consensus       207 Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~  282 (291)
T 1n57_A          207 CAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA  282 (291)
T ss_dssp             CCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred             EeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence            999998877632                     3455    78899999999999999999999999999998764

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.96  E-value=5.7e-29  Score=225.74  Aligned_cols=168  Identities=20%  Similarity=0.208  Sum_probs=143.5

Q ss_pred             cCEEEEEeCC------------CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCC----------------------
Q 015523          220 MPRVLIPIAN------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ----------------------  265 (405)
Q Consensus       220 ~~~V~il~~~------------g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~----------------------  265 (405)
                      |+||+|++.+            ||++.|+..|+++|+++|++|+++|++++ ......                      
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   87 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGT-FGWDEHSLTQEYLSKEDEKVLHSEHNHF   87 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSC-CCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCC-cccCcccccccccCHHHHHHHHhhhHHH
Confidence            6899999986            88999999999999999999999999987 432211                      


Q ss_pred             CcEEee-CCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc------CCCCCCe
Q 015523          266 GVKIIA-DKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH------GLLKAKK  338 (405)
Q Consensus       266 g~~v~~-~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a------GlL~g~~  338 (405)
                      +..+.. +..++++++.+||+|+||||++.+..+..++.+++||+++++++|+|++||+|+++|+++      |||+||+
T Consensus        88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~  167 (247)
T 3n7t_A           88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKT  167 (247)
T ss_dssp             HHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCE
T ss_pred             HHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCce
Confidence            223555 778899888999999999998544678899999999999999999999999999999999      9999999


Q ss_pred             eecCcchhhh-------------------hhc--CcccC------CcEEEcCCeEecCChhhHHHHHHHHHHHccCH
Q 015523          339 ATAHPSVIGK-------------------LTN--EVVNG------TKVVVDGKVITSRGLANVIDFALAIVSKFFGH  388 (405)
Q Consensus       339 ~t~~~~~~~~-------------------l~~--~~~~~------~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~g~  388 (405)
                      +|+||...+.                   +++  ..+.+      ..+|+|||+||++|+.++.+|++++|+.|.+.
T Consensus       168 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          168 VTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             ECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             ecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence            9999987543                   222  34444      58999999999999999999999999998653

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.96  E-value=5.4e-29  Score=226.91  Aligned_cols=167  Identities=16%  Similarity=0.170  Sum_probs=142.8

Q ss_pred             CcEEEEEec------------CCCchhhHHHHHHHHHhcCCEEEEEecCCCceeE---e-------------------cc
Q 015523           17 ALNVLVPVG------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---A-------------------SS   62 (405)
Q Consensus        17 ~~ki~ill~------------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~---~-------------------~~   62 (405)
                      |+||+|++.            +||...|+..|+++|++++|+++++|++++ +..   +                   +.
T Consensus         3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (243)
T 1rw7_A            3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF   81 (243)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCcCcccccccccChHHHHHHHhhhHHH
Confidence            468999997            688999999999999999999999999987 532   1                   23


Q ss_pred             CcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC-------CCCCc
Q 015523           63 GTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-------LLRRK  135 (405)
Q Consensus        63 g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag-------ll~g~  135 (405)
                      |..+.++..+++++..+||+||||||+.....+..++.+.+||+++++++++|++||+|+. +|+++|       +|+|+
T Consensus        82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~-~La~ag~~~~g~~lL~G~  160 (243)
T 1rw7_A           82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-IFDGLTDKKTGRPLIEGK  160 (243)
T ss_dssp             HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTSSBTTTTC
T ss_pred             HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHH-HHHhcCcccCCceeeCCc
Confidence            5678888899988767899999999964456678899999999999999999999999765 899999       99999


Q ss_pred             ceeeccCcccc-------------------CC--CCccc------cCcEEEeCCeEcCCCcccHHHHHHHHHHHhcC
Q 015523          136 QITCHPAFTDK-------------------LP--TFWAV------KSNIHVSGEVTTSRGPGTSFEFALCLVEQLFG  185 (405)
Q Consensus       136 ~~t~~~~~~~~-------------------l~--~~~~~------~~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g  185 (405)
                      ++|+||...+.                   |+  ...+.      ++.+|+|||+|||+|+.++.+|++++|+++..
T Consensus       161 ~~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          161 SITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             EECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             EEeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence            99999986554                   22  23455      66799999999999999999999999998754

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.95  E-value=2.7e-28  Score=227.31  Aligned_cols=170  Identities=15%  Similarity=0.244  Sum_probs=145.2

Q ss_pred             CcEEEEEecC--------------CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEec--------------c---CcE
Q 015523           17 ALNVLVPVGF--------------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS--------------S---GTR   65 (405)
Q Consensus        17 ~~ki~ill~~--------------g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~--------------~---g~~   65 (405)
                      ++||+|++.+              ||...|+..++++|++++|+|+++|++++ +++.+              .   |..
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~-~v~~d~~s~~~~~~~~~~~~~~~g~~  126 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKSL  126 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cccccccccccccHHHHHHHHhccce
Confidence            4699999986              79999999999999999999999999997 77532              2   777


Q ss_pred             EecCcccCCC-----CCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc----CCCCCcc
Q 015523           66 LVADTSISNC-----SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW----GLLRRKQ  136 (405)
Q Consensus        66 v~~~~~~~~~-----~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a----gll~g~~  136 (405)
                      +.++..++++     +..+||+||||||+.....+..++.+.+||+++++++++|++||+|++ +|+++    |+|+|++
T Consensus       127 l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~-~La~a~~~~GLL~Gr~  205 (291)
T 1n57_A          127 FRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLALRHGDNPLNGYS  205 (291)
T ss_dssp             HHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGGTTSCCTTTTCE
T ss_pred             ecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHH-HHHhhcccCccCCCCE
Confidence            8888888873     346899999999953333678899999999999999999999999765 67776    5999999


Q ss_pred             eeeccCccccCCC---------------------Cccc----cCcEEEeCCeEcCCCcccHHHHHHHHHHHhcChHH
Q 015523          137 ITCHPAFTDKLPT---------------------FWAV----KSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESV  188 (405)
Q Consensus       137 ~t~~~~~~~~l~~---------------------~~~~----~~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~  188 (405)
                      +|+||...+.+++                     ..+.    +..+|+|||+|||+|+.++.+|++++|+++.|.+.
T Consensus       206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~  282 (291)
T 1n57_A          206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA  282 (291)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence            9999998887642                     2455    67799999999999999999999999999988754

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.95  E-value=2.6e-28  Score=221.41  Aligned_cols=169  Identities=18%  Similarity=0.183  Sum_probs=141.0

Q ss_pred             CcEEEEEecC------------CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEec---------------------cC
Q 015523           17 ALNVLVPVGF------------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS---------------------SG   63 (405)
Q Consensus        17 ~~ki~ill~~------------g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~---------------------~g   63 (405)
                      |+||+|++.+            ||...|+..|+++|+++|++|+++|++++.++...                     .+
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   88 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM   88 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence            6899999986            88899999999999999999999999987323110                     12


Q ss_pred             cEEec-CcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc------CCCCCcc
Q 015523           64 TRLVA-DTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW------GLLRRKQ  136 (405)
Q Consensus        64 ~~v~~-~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a------gll~g~~  136 (405)
                      ..+.. +..++++++.+||+|+||||+.....+..++.+.+||+++++++|+|++||+|++ +|+++      |+|+|++
T Consensus        89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~-~La~a~~~~g~gll~G~~  167 (247)
T 3n7t_A           89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPA-MLPGIHDENGDSVIKDKT  167 (247)
T ss_dssp             HHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGCBCTTSSBTTTTCE
T ss_pred             HHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHhhcccCCccccCce
Confidence            23555 7788888888999999999963336688999999999999999999999999866 79998      9999999


Q ss_pred             eeeccCcccc-------------------CCC--Ccccc------CcEEEeCCeEcCCCcccHHHHHHHHHHHhcCh
Q 015523          137 ITCHPAFTDK-------------------LPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGE  186 (405)
Q Consensus       137 ~t~~~~~~~~-------------------l~~--~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~  186 (405)
                      +|+||...+.                   +++  ..+++      ..+|+|||+||++|+.++.+|++++|+++.+.
T Consensus       168 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          168 VTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             ECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             ecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence            9999987543                   222  45554      47999999999999999999999999998643

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.95  E-value=1.3e-28  Score=222.90  Aligned_cols=171  Identities=25%  Similarity=0.328  Sum_probs=142.8

Q ss_pred             CcCEEEEEeC-----CCCcHHHHHHHHHHHHhCCCeEEEEeecCCce--e---------ecCCCcEEeeC-------CCc
Q 015523          219 RMPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERSTQ--I---------VASQGVKIIAD-------KSI  275 (405)
Q Consensus       219 ~~~~V~il~~-----~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~--v---------~~~~g~~v~~~-------~~l  275 (405)
                      .|+||+|+++     +||.+.|+..|+++|+++||+++++|++++ +  +         .++.|+.+.++       ..+
T Consensus         5 ~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~-~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l   83 (232)
T 1vhq_A            5 TMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPL   83 (232)
T ss_dssp             -CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEG
T ss_pred             cCCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC-CCcccccccccchhhhhhhhHHHHHhhhcCCCCH
Confidence            4689999999     999999999999999999999999999987 4  3         67788888887       788


Q ss_pred             cCcCCCCccEEEEcCCccchHhh----------hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCC-CCeeecC-c
Q 015523          276 SDAAESVYDLIILPGGVAGAERL----------QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLK-AKKATAH-P  343 (405)
Q Consensus       276 ~~~~~~~~D~livpgG~~~~~~~----------~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~-g~~~t~~-~  343 (405)
                      +++++.+||+|+||||++....+          +.++.+++||++++++||+|++||+|+++|+++  |+ ||++|+| |
T Consensus        84 ~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a--L~~Gr~~Tth~~  161 (232)
T 1vhq_A           84 AQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI--FDFPLRLTIGTD  161 (232)
T ss_dssp             GGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH--CSSCCEECCCSC
T ss_pred             HHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH--hcCCCEEeccCC
Confidence            88777889999999997432212          248999999999999999999999999999999  79 9999999 5


Q ss_pred             -chhhhhhc--CcccC----CcEEE-cCCeEecCChhhHHHHHHHHHHHccCHHH-HHHHHh
Q 015523          344 -SVIGKLTN--EVVNG----TKVVV-DGKVITSRGLANVIDFALAIVSKFFGHAR-TRSVAE  396 (405)
Q Consensus       344 -~~~~~l~~--~~~~~----~~~v~-dg~iiTa~g~~~~~~~~l~~i~~l~g~~~-a~~v~~  396 (405)
                       ...+.|++  ..+.+    +.++. |||+|||+    +++|++++|+++.|.+. ++.+.+
T Consensus       162 ~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~~~~~~~  219 (232)
T 1vhq_A          162 IDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKLVSRVLV  219 (232)
T ss_dssp             HHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHHHHHHHHH
Confidence             67788876  44444    34454 59999997    78999999999999974 444443

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.94  E-value=2.4e-28  Score=221.14  Aligned_cols=179  Identities=20%  Similarity=0.260  Sum_probs=143.0

Q ss_pred             CCCcEEEEEec-----CCCchhhHHHHHHHHHhcCCEEEEEecCCCce--e---------EeccCcEEecC-------cc
Q 015523           15 SFALNVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--V---------EASSGTRLVAD-------TS   71 (405)
Q Consensus        15 ~~~~ki~ill~-----~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~--v---------~~~~g~~v~~~-------~~   71 (405)
                      +.|+||+|+++     +||+..|+..++++|++++|+++++|++++ +  +         +++.|+.+.++       ..
T Consensus         4 ~~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~-~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~   82 (232)
T 1vhq_A            4 ITMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRP   82 (232)
T ss_dssp             --CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEE
T ss_pred             ccCCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC-CCcccccccccchhhhhhhhHHHHHhhhcCCCC
Confidence            34679999999     999999999999999999999999999986 4  3         77888888887       77


Q ss_pred             cCCCCCCcccEEEEcCCchhhh----------ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCC-Ccceeec
Q 015523           72 ISNCSHQVFDLIALPGGMPGSV----------RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLR-RKQITCH  140 (405)
Q Consensus        72 ~~~~~~~~~d~liipgg~~~~~----------~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~-g~~~t~~  140 (405)
                      ++++++.+||+|+||||+....          .++.++.+.+||+++++++++|++||+|+. +|+++  |+ |+++|+|
T Consensus        83 l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~-~La~a--L~~Gr~~Tth  159 (232)
T 1vhq_A           83 LAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKI--FDFPLRLTIG  159 (232)
T ss_dssp             GGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHH--CSSCCEECCC
T ss_pred             HHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHH--hcCCCEEecc
Confidence            8887666899999999964322          123489999999999999999999999755 79988  79 9999999


Q ss_pred             -c-CccccCCC--Ccccc---CcEEEe--CCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          141 -P-AFTDKLPT--FWAVK---SNIHVS--GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       141 -~-~~~~~l~~--~~~~~---~~~v~d--g~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                       | ...+.|++  ..+++   .++++|  ||+|||+    ++|+++++|+++.|.+.+  +.+.+.|.+.+.
T Consensus       160 ~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~--~~~~~~~~~~~~  225 (232)
T 1vhq_A          160 TDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKL--VSRVLVLAEEGG  225 (232)
T ss_dssp             SCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHH--HHHHHHHHC---
T ss_pred             CCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHHH--HHHHHHhhhccC
Confidence             6 66677765  45554   245555  9999996    888999999999999754  444555555443

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.94  E-value=7.6e-28  Score=217.69  Aligned_cols=155  Identities=21%  Similarity=0.249  Sum_probs=130.1

Q ss_pred             CcCEEEEEeC-----CCCcHHHHHHHHHHHHhCCCeEEEEeecCC----------ceeecCCCcEEeeC-------CCcc
Q 015523          219 RMPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERS----------TQIVASQGVKIIAD-------KSIS  276 (405)
Q Consensus       219 ~~~~V~il~~-----~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~----------~~v~~~~g~~v~~~-------~~l~  276 (405)
                      +++||+|++.     |||++.|+..|+++|+++|++++++|++++          .++.++.|+.+.++       ..++
T Consensus        22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~  101 (242)
T 3l3b_A           22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE  101 (242)
T ss_dssp             --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred             ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence            4589999998     999999999999999999999999999985          24667788888887       6789


Q ss_pred             CcCCCCccEEEEcCCccchHhh-----------hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC-CCCCCeeecCcc
Q 015523          277 DAAESVYDLIILPGGVAGAERL-----------QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKAKKATAHPS  344 (405)
Q Consensus       277 ~~~~~~~D~livpgG~~~~~~~-----------~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG-lL~g~~~t~~~~  344 (405)
                      ++++.+||+|+||||......+           ..++.+++||+++++++|+|++||+|+++|+++| ||+|+++|+||.
T Consensus       102 dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag~lL~Gr~~T~~~~  181 (242)
T 3l3b_A          102 QIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTIGED  181 (242)
T ss_dssp             GCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHHTTTCCCEECCCC-
T ss_pred             HCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhCcccCCCEEEecCC
Confidence            8877899999999997543322           5679999999999999999999999999999999 999999999998


Q ss_pred             hhhhhhc--CcccC---CcEEEc--CCeEecCChhh
Q 015523          345 VIGKLTN--EVVNG---TKVVVD--GKVITSRGLAN  373 (405)
Q Consensus       345 ~~~~l~~--~~~~~---~~~v~d--g~iiTa~g~~~  373 (405)
                      ....+++  ..+.+   +.+|+|  ||+||++++..
T Consensus       182 ~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~  217 (242)
T 3l3b_A          182 SNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMR  217 (242)
T ss_dssp             ---CHHHHTCEECCCCTTCCEEETTTTEEEECGGGS
T ss_pred             hHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCccc
Confidence            8776765  45555   578888  99999998754

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.93  E-value=3.2e-27  Score=213.59  Aligned_cols=168  Identities=17%  Similarity=0.158  Sum_probs=135.2

Q ss_pred             CCcEEEEEec-----CCCchhhHHHHHHHHHhcCCEEEEEecCCCc----------eeEeccCcEEecC-------cccC
Q 015523           16 FALNVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----------EVEASSGTRLVAD-------TSIS   73 (405)
Q Consensus        16 ~~~ki~ill~-----~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~----------~v~~~~g~~v~~~-------~~~~   73 (405)
                      +++||+|++.     |||+..|+..|+++|+++|++++++|+++++          ++.++.|+.+.++       ..++
T Consensus        22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~  101 (242)
T 3l3b_A           22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE  101 (242)
T ss_dssp             --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred             ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence            4479999998     9999999999999999999999999998852          4667788888887       6788


Q ss_pred             CCCCCcccEEEEcCCchhhhc-----------cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC-CCCCcceeecc
Q 015523           74 NCSHQVFDLIALPGGMPGSVR-----------LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-LLRRKQITCHP  141 (405)
Q Consensus        74 ~~~~~~~d~liipgg~~~~~~-----------~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag-ll~g~~~t~~~  141 (405)
                      ++++.+||+|+||||+.....           +..++.+.+||+++++++++|++||+|++ +|+++| +|+|+++|+||
T Consensus       102 dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~-~La~ag~lL~Gr~~T~~~  180 (242)
T 3l3b_A          102 QIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPA-VVVALLKDIAKVKVTIGE  180 (242)
T ss_dssp             GCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHH-HHHHHHTTTCCCEECCCC
T ss_pred             HCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHhCcccCCCEEEecC
Confidence            887778999999999643221           25679999999999999999999999765 799999 99999999999


Q ss_pred             CccccCCC--Ccccc---CcEEEe--CCeEcCCCcccHHHHHHHHHHHhcChHH
Q 015523          142 AFTDKLPT--FWAVK---SNIHVS--GEVTTSRGPGTSFEFALCLVEQLFGESV  188 (405)
Q Consensus       142 ~~~~~l~~--~~~~~---~~~v~d--g~iiT~~g~~~~~~~~l~ii~~~~g~~~  188 (405)
                      .....+++  ..+++   +++|+|  ||+|||.+...    +..+.+...|.+.
T Consensus       181 ~~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~----~~~~~e~~~g~~~  230 (242)
T 3l3b_A          181 DSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMR----NDSLYNVYLGIQD  230 (242)
T ss_dssp             ----CHHHHTCEECCCCTTCCEEETTTTEEEECGGGS----CCCHHHHHHHHHH
T ss_pred             ChHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCccc----CCCHHHHHhCHHH
Confidence            98777766  66666   578999  99999998764    3345555555543

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.88  E-value=7.8e-22  Score=201.48  Aligned_cols=187  Identities=18%  Similarity=0.218  Sum_probs=150.9

Q ss_pred             cChHHHHHHHHhcccccccCc------ccccccccccc-ccC---CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEE
Q 015523          184 FGESVAKEIGELLLMHNADNS------LKKEEFNEVEW-FFD---RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVA  253 (405)
Q Consensus       184 ~g~~~a~~~a~~l~~~~~~~~------~~~~~~~~~~~-~~~---~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~v  253 (405)
                      ..++++++|++.+..+.....      ......++... ...   +++||+||++||++..|+..++++|..+||+++++
T Consensus       488 ~d~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~ls~~~~~~~~~~m~~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~iv  567 (715)
T 1sy7_A          488 IDLGLAQTIAEMVGGEAPTTTNHPNHGRKTINLSQTEFPPATPTIKSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVI  567 (715)
T ss_dssp             TCHHHHHHHHHHHCSCCCSCCSSCCCCCCCSSCSGGGCCCSSSCCTTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCHHHHHHHHHHhCCCCCCCccccCCCCCCcccccccCCCCCCCCCCCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEE
Confidence            467888899999976532210      12222222222 112   34799999999999999999999999999999999


Q ss_pred             eecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc-C
Q 015523          254 SVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-G  332 (405)
Q Consensus       254 s~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a-G  332 (405)
                      |++++ ++.++.|..+.++..++++++.+||+||||||..+...+..++.+++||+++++++|+|++||+|+++|+++ |
T Consensus       568 S~~gg-~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG  646 (715)
T 1sy7_A          568 GPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA  646 (715)
T ss_dssp             ESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred             ECCCC-ceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence            99998 999999999999999999877889999999996456677889999999999999999999999999999999 9


Q ss_pred             CCCCCeeecCcchhhhhhcCcccCCcEEEcCCeEecCChh------------hHHHHHHHHHHHcc
Q 015523          333 LLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLA------------NVIDFALAIVSKFF  386 (405)
Q Consensus       333 lL~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiTa~g~~------------~~~~~~l~~i~~l~  386 (405)
                      |.+-+...               ...+|+||++||++|+.            ++.+|+..+++.+.
T Consensus       647 L~~L~~aG---------------a~~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~  697 (715)
T 1sy7_A          647 LPQVTVSS---------------EAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIA  697 (715)
T ss_dssp             CTTSCCCC---------------SSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHH
T ss_pred             cHhHHhcC---------------CCcEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHH
Confidence            84322211               16799999999999986            55678888887764

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.84  E-value=1.8e-20  Score=191.48  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=133.0

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      ++++||+||++|||+..|+..++++|++++++++++|++++ +|++++|..+.++..++++++.+||+||||||......
T Consensus       532 m~~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg-~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~  610 (715)
T 1sy7_A          532 IKSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAET  610 (715)
T ss_dssp             CTTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHH
T ss_pred             CCCCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC-ceecCCCceEecccccccCCcccCCEEEEcCCcccHhh
Confidence            35689999999999999999999999999999999999998 99999999999999999987778999999999545666


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc-CCCCCcceeeccCccccCCCCccccCcEEEeCCeEcCCCcc---
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-GLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPG---  170 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a-gll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~iiT~~g~~---  170 (405)
                      +..++.+++||+++++++|+|++||+|+ ++|+++ |+.+-+.+            .   ...+|+||++|||+|+.   
T Consensus       611 l~~~~~l~~~Lr~~~~~gK~IaAIC~G~-~lLA~AlGL~~L~~a------------G---a~~VVvDg~lITs~gp~~~~  674 (715)
T 1sy7_A          611 LSKNGRALHWIREAFGHLKAIGATGEAV-DLVAKAIALPQVTVS------------S---EAEVHESYGVVTLKKVKPES  674 (715)
T ss_dssp             HHTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHHHCCTTSCCC------------C---SSSCEEETTEEEESSCCTTT
T ss_pred             hccCHHHHHHHHHHHhCCCEEEEECHHH-HHHHHccCcHhHHhc------------C---CCcEEEeCCEEECCCCcccc
Confidence            7789999999999999999999999964 589999 98322211            1   15799999999999986   


Q ss_pred             ---------cHHHHHHHHHHHhcC
Q 015523          171 ---------TSFEFALCLVEQLFG  185 (405)
Q Consensus       171 ---------~~~~~~l~ii~~~~g  185 (405)
                               ++.+|+..+++.+..
T Consensus       675 l~~~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          675 FTDAVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             TTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             cccccccccCHHHHHHHHHHHHHc
Confidence                     566788888887654

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.77  E-value=1.8e-18  Score=174.79  Aligned_cols=148  Identities=12%  Similarity=0.107  Sum_probs=125.5

Q ss_pred             cChHHHHHHHHhcccccccC----------c--cccccccccccc--cCCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCe
Q 015523          184 FGESVAKEIGELLLMHNADN----------S--LKKEEFNEVEWF--FDRMPRVLIPIANGSEEIEIVTIVDILRRAKVD  249 (405)
Q Consensus       184 ~g~~~a~~~a~~l~~~~~~~----------~--~~~~~~~~~~~~--~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~  249 (405)
                      ..++++++|++.+..+....          .  ......++....  .-+.+||+||+.|||++.|+..+++.|+++|+.
T Consensus       550 ~d~~l~~~va~~l~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~ti~grKVaILlaDGfEe~El~~pvdaLr~AG~~  629 (753)
T 3ttv_A          550 IDLTLAQAVAKNLGIELTDDQLNITPPPDVNGLKKDPSLSLYAIPDGDVKGRVVAILLNDEVRSADLLAILKALKAKGVH  629 (753)
T ss_dssp             TCHHHHHHHHHHHTCCCCHHHHTCCCCCCBTTBSCCGGGCSSSSCCCCCTTCEEEEECCTTCCHHHHHHHHHHHHHHTCE
T ss_pred             HCHHHHHHHHHHhCCCCCCcccccccCCCCCCCCCCccccccCCCCCCCCCCEEEEEecCCCCHHHHHHHHHHHHHCCCE
Confidence            47788899999888764321          0  012222222221  123489999999999999999999999999999


Q ss_pred             EEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHH
Q 015523          250 VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH  329 (405)
Q Consensus       250 v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La  329 (405)
                      |+++|++++ +|+++.|..+.+|..++++++.+||+|+||||  +...++.++.+++||+++++++|+|++||+|+++|+
T Consensus       630 V~vVS~~~g-~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa  706 (753)
T 3ttv_A          630 AKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKA  706 (753)
T ss_dssp             EEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGG
T ss_pred             EEEEEcCCC-eEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHH
Confidence            999999998 99999999999999999998888999999999  577889999999999999999999999999999999


Q ss_pred             HcCCC
Q 015523          330 KHGLL  334 (405)
Q Consensus       330 ~aGlL  334 (405)
                      ++||-
T Consensus       707 ~AGL~  711 (753)
T 3ttv_A          707 TIKIA  711 (753)
T ss_dssp             GGTCC
T ss_pred             HcCCC
Confidence            99984

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.75  E-value=8.2e-18  Score=170.05  Aligned_cols=114  Identities=13%  Similarity=0.101  Sum_probs=107.9

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR   94 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~   94 (405)
                      .+++||+||+.|||++.|+..++++|+++|++|++++++++ +|++++|..+.+|..++++++.+||+|+||||  +...
T Consensus       598 i~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g-~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~  674 (753)
T 3ttv_A          598 VKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIAD  674 (753)
T ss_dssp             CTTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGG
T ss_pred             CCCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC-eEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHH
Confidence            45689999999999999999999999999999999999998 99999999999999999999889999999999  5777


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCC
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL  132 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll  132 (405)
                      ++.++.+++||+++++++|+|++||+|++ +|+++|+-
T Consensus       675 Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~-lLa~AGL~  711 (753)
T 3ttv_A          675 IADNGDANYYLMEAYKHLKPIALAGDARK-FKATIKIA  711 (753)
T ss_dssp             TTTCHHHHHHHHHHHHTTCCEEEEGGGGG-GGGGGTCC
T ss_pred             hhhCHHHHHHHHHHHhcCCeEEEECchHH-HHHHcCCC
Confidence            89999999999999999999999999876 79999984

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.65  E-value=8.2e-16  Score=155.21  Aligned_cols=142  Identities=15%  Similarity=0.161  Sum_probs=115.5

Q ss_pred             cChHHHHHHHHhcccccccCcc------ccccccccccccC--CcCEEEEEeC--CCCcHHHHHHHHHHHHhCCCeEEEE
Q 015523          184 FGESVAKEIGELLLMHNADNSL------KKEEFNEVEWFFD--RMPRVLIPIA--NGSEEIEIVTIVDILRRAKVDVVVA  253 (405)
Q Consensus       184 ~g~~~a~~~a~~l~~~~~~~~~------~~~~~~~~~~~~~--~~~~V~il~~--~g~~~~e~~~~~~~l~~~~~~v~~v  253 (405)
                      ..++++++|++.+..+......      .....++......  ..+||+||+.  +||++.|+..+.+.|+++|+.++++
T Consensus       485 ~d~~~~~~v~~~l~~~~p~~~~~~~~~~~~~~ls~~~~~~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vV  564 (688)
T 2iuf_A          485 ISDNLATRVASAIGVEAPKPNSSFYHDNTTAHIGAFGEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVV  564 (688)
T ss_dssp             HCHHHHHHHHTTTTCCCCCCCGGGCCCCCCTTCSSSSSCCSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred             hCHHHHHHHHHHhCCCCCCCCccCCCCCCCcccccCcCCCCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEE
Confidence            4678899999999765322111      1222222222111  2489999999  9999999999999999999999999


Q ss_pred             eecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc----------------hHhhhcChHHHHHHHHHhhcCCE
Q 015523          254 SVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG----------------AERLQKSRILKKLLKEQKVAGRI  317 (405)
Q Consensus       254 s~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~----------------~~~~~~~~~l~~~l~~~~~~~k~  317 (405)
                      +++.+ .         .+|.++++.++.+||+|+||||..+                ...+..++.++++|++++++||+
T Consensus       565 s~~~g-~---------~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKp  634 (688)
T 2iuf_A          565 AERXA-N---------NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKT  634 (688)
T ss_dssp             ESSCC-T---------TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCE
T ss_pred             eccCC-c---------ccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCE
Confidence            99876 2         7888999988899999999999755                56688999999999999999999


Q ss_pred             EEEEchHHHHHHHcCCCC
Q 015523          318 YGAVCSSPIVLHKHGLLK  335 (405)
Q Consensus       318 i~aic~g~~~La~aGlL~  335 (405)
                      |++||+|+.+|..+|+..
T Consensus       635 IaAIc~ap~vL~~aGi~~  652 (688)
T 2iuf_A          635 VGALGSGSDALESGQISS  652 (688)
T ss_dssp             EEEEGGGHHHHHHTTCCT
T ss_pred             EEEECchHHHHHHcCCCC
Confidence            999999999999999854

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.61  E-value=2.9e-15  Score=151.27  Aligned_cols=130  Identities=15%  Similarity=0.103  Sum_probs=111.0

Q ss_pred             CCCcEEEEEec--CCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh-
Q 015523           15 SFALNVLVPVG--FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-   91 (405)
Q Consensus        15 ~~~~ki~ill~--~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~-   91 (405)
                      ..++||+||+.  +||++.|+..+.+.|+++|+++.++++..+ .         .+|.++++.++.+||+||||||..+ 
T Consensus       527 l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g-~---------~vD~t~~~~~s~~fDAVvlPGG~~g~  596 (688)
T 2iuf_A          527 LDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXA-N---------NVDETYSASDAVQFDAVVVADGAEGL  596 (688)
T ss_dssp             CTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCC-T---------TCCEESTTCCGGGCSEEEECTTCGGG
T ss_pred             CCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCC-c---------ccccchhcCCccccCeEEecCCCccc
Confidence            45689999999  999999999999999999999999999875 2         8889999988889999999999755 


Q ss_pred             ---------------hhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCc
Q 015523           92 ---------------SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSN  156 (405)
Q Consensus        92 ---------------~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~  156 (405)
                                     ...+..++.++++|+++++++|+|++||+|++ +|..+|+..                       
T Consensus       597 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~~aGi~~-----------------------  652 (688)
T 2iuf_A          597 FGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSD-ALESGQISS-----------------------  652 (688)
T ss_dssp             CCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHHHTTCCT-----------------------
T ss_pred             ccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHH-HHHHcCCCC-----------------------
Confidence                           66788899999999999999999999999988 799999853                       


Q ss_pred             EEEeCCeEcCCCcccHHHHHHHHHHH
Q 015523          157 IHVSGEVTTSRGPGTSFEFALCLVEQ  182 (405)
Q Consensus       157 ~v~dg~iiT~~g~~~~~~~~l~ii~~  182 (405)
                        .|++++|+.++  .-+++-.+++.
T Consensus       653 --~d~GVvts~~~--~~~f~~~fi~~  674 (688)
T 2iuf_A          653 --ERQGVYTGKNA--GDAFAKDIKSG  674 (688)
T ss_dssp             --TSTTEEEESSS--SHHHHHHHHHH
T ss_pred             --CCCCEEEcCCc--cHHHHHHHHHH
Confidence              35778888776  23345555544

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.60  E-value=8.2e-15  Score=147.49  Aligned_cols=141  Identities=16%  Similarity=0.143  Sum_probs=115.1

Q ss_pred             cChHHHHHHHHhcccccccCcc------cccccccccc--ccCCcCEEEEEeCCC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 015523          184 FGESVAKEIGELLLMHNADNSL------KKEEFNEVEW--FFDRMPRVLIPIANG-SEEIEIVTIVDILRRAKVDVVVAS  254 (405)
Q Consensus       184 ~g~~~a~~~a~~l~~~~~~~~~------~~~~~~~~~~--~~~~~~~V~il~~~g-~~~~e~~~~~~~l~~~~~~v~~vs  254 (405)
                      ..++++++|++.+..+......      .....+++..  +.-+.+||+||+.|| |++.|+..+.+.|+++|+.+++++
T Consensus       493 ~d~~~~~~va~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVs  572 (688)
T 3ej6_A          493 ISNDVAKRVAVALGLEAPQPDPTYYHNNVTRGVSIFNESLPTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIA  572 (688)
T ss_dssp             HCHHHHHHHHHHHTSCCCSCCTTSCCCCCCSSCCSSSSCCSCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hCHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCCCCCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEe
Confidence            4678888999988876433211      2223332211  122458999999999 999999999999999999999999


Q ss_pred             ecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-------HhhhcChHHHHHHHHHhhcCCEEEEEchHHHH
Q 015523          255 VERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-------ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIV  327 (405)
Q Consensus       255 ~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-------~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~  327 (405)
                      ++.+      .|    +|.++++.++.+||+|+||||..+.       ..++.++.++++|+++++++|+|++||+|+++
T Consensus       573 p~~g------~G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~l  642 (688)
T 3ej6_A          573 EYLA------SG----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKA  642 (688)
T ss_dssp             SSCC------TT----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHH
T ss_pred             CCCC------CC----cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHH
Confidence            9886      24    7999999999999999999997542       56888999999999999999999999999999


Q ss_pred             HHHcCCC
Q 015523          328 LHKHGLL  334 (405)
Q Consensus       328 La~aGlL  334 (405)
                      |..+|+-
T Consensus       643 L~~AGI~  649 (688)
T 3ej6_A          643 LQSIGVE  649 (688)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9999984

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.54  E-value=2.2e-14  Score=144.43  Aligned_cols=107  Identities=20%  Similarity=0.144  Sum_probs=96.8

Q ss_pred             CCCcEEEEEecCC-CchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh--
Q 015523           15 SFALNVLVPVGFG-TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--   91 (405)
Q Consensus        15 ~~~~ki~ill~~g-~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~--   91 (405)
                      .+++||+||+.|| |++.|+..+.+.|+++|+.+++++++.+      .|    +|.+++++++.+||+|+||||..+  
T Consensus       535 l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g------~G----vD~t~~~~~s~~fDAVvlPGG~~~~~  604 (688)
T 3ej6_A          535 IATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA------SG----VDQTYSAADATAFDAVVVAEGAERVF  604 (688)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC------TT----CCEETTTCCGGGCSEEEECTTCCTTT
T ss_pred             ccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC------CC----cccCcccCChhcCcEEEECCCccccc
Confidence            4678999999999 9999999999999999999999999886      24    799999999999999999999644  


Q ss_pred             -----hhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCC
Q 015523           92 -----SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL  132 (405)
Q Consensus        92 -----~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll  132 (405)
                           ++.++.++.+++|++++++++|+|++||+|++ +|.++|+-
T Consensus       605 ~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~-lL~~AGI~  649 (688)
T 3ej6_A          605 SGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKK-ALQSIGVE  649 (688)
T ss_dssp             STTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHH-HHHHTTCC
T ss_pred             ccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHH-HHHHcCCC
Confidence                 26688899999999999999999999999887 79999973

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.09  E-value=1.4e-10  Score=102.94  Aligned_cols=95  Identities=21%  Similarity=0.343  Sum_probs=76.2

Q ss_pred             CcCEEEEEeCCCCcH-HHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          219 RMPRVLIPIANGSEE-IEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       219 ~~~~V~il~~~g~~~-~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      +|+||+|+.++++.. .+   +.+.|+++|+++.+++..                   ++  ..++|+||+|||......
T Consensus         1 m~~~i~il~~~~~~~~~~---~~~~l~~~g~~~~~~~~~-------------------~~--~~~~d~lil~Gg~~~~~~   56 (213)
T 3d54_D            1 MKPRACVVVYPGSNCDRD---AYHALEINGFEPSYVGLD-------------------DK--LDDYELIILPGGFSYGDY   56 (213)
T ss_dssp             CCCEEEEECCTTEEEHHH---HHHHHHTTTCEEEEECTT-------------------CC--CSSCSEEEECEECGGGGC
T ss_pred             CCcEEEEEEcCCCCccHH---HHHHHHHCCCEEEEEecC-------------------CC--cccCCEEEECCCCchhhh
Confidence            368999999999874 54   489999999999888532                   12  257999999998632222


Q ss_pred             -----hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCC
Q 015523          298 -----LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK  337 (405)
Q Consensus       298 -----~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~  337 (405)
                           ...+..+.++|+++.+++++|.+||.|..+|+.+|+|+|+
T Consensus        57 ~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~  101 (213)
T 3d54_D           57 LRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGA  101 (213)
T ss_dssp             SSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSE
T ss_pred             hccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCC
Confidence                 2345678999999999999999999999999999999884

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=98.92  E-value=2.1e-09  Score=95.24  Aligned_cols=94  Identities=23%  Similarity=0.297  Sum_probs=73.5

Q ss_pred             CcEEEEEecCCCch-hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc-
Q 015523           17 ALNVLVPVGFGTEE-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-   94 (405)
Q Consensus        17 ~~ki~ill~~g~~~-~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~-   94 (405)
                      ++||+|+.+++++. .+   +.+.|+++|+++.++++.                   ++.  .++|+||+|||...... 
T Consensus         2 ~~~i~il~~~~~~~~~~---~~~~l~~~g~~~~~~~~~-------------------~~~--~~~d~lil~Gg~~~~~~~   57 (213)
T 3d54_D            2 KPRACVVVYPGSNCDRD---AYHALEINGFEPSYVGLD-------------------DKL--DDYELIILPGGFSYGDYL   57 (213)
T ss_dssp             CCEEEEECCTTEEEHHH---HHHHHHTTTCEEEEECTT-------------------CCC--SSCSEEEECEECGGGGCS
T ss_pred             CcEEEEEEcCCCCccHH---HHHHHHHCCCEEEEEecC-------------------CCc--ccCCEEEECCCCchhhhh
Confidence            57999999999885 44   489999999999888642                   122  36999999999532222 


Q ss_pred             ----cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCc
Q 015523           95 ----LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK  135 (405)
Q Consensus        95 ----~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~  135 (405)
                          +..+..+.++|+++.++++||.+||.| ..+|+.+|+|+|+
T Consensus        58 ~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G-~qlLa~aGll~g~  101 (213)
T 3d54_D           58 RPGAVAAREKIAFEIAKAAERGKLIMGICNG-FQILIEMGLLKGA  101 (213)
T ss_dssp             STTHHHHTSTTHHHHHHHHHHTCEEEECHHH-HHHHHHHTSSCSE
T ss_pred             ccccccccHHHHHHHHHHHHCCCEEEEECHH-HHHHHHcCCCCCC
Confidence                123567899999999999999999996 5589999999883

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.27  E-value=1.1e-06  Score=76.48  Aligned_cols=87  Identities=22%  Similarity=0.265  Sum_probs=62.7

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-hh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-~~  298 (405)
                      |+||+|+-+.+ +..+   ..+.|++.|+++.++++.                   +++  .++|+|++|||..... .+
T Consensus         1 ~m~I~il~~~~-~~~~---~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~~   55 (196)
T 2nv0_A            1 MLTIGVLGLQG-AVRE---HIHAIEACGAAGLVVKRP-------------------EQL--NEVDGLILPGGESTTMRRL   55 (196)
T ss_dssp             CCEEEEECSSS-CCHH---HHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEEccC-CcHH---HHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCChhhHHHH
Confidence            47899996532 2222   248888999988877431                   123  5689999999964332 23


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus        56 ~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~   88 (196)
T 2nv0_A           56 IDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (196)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             hhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence            334556889999999999999999999999874

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.21  E-value=1.6e-06  Score=76.95  Aligned_cols=87  Identities=23%  Similarity=0.271  Sum_probs=64.1

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-hh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-~~  298 (405)
                      .++|+|+.+.+. ..+   ..+.|+++|+++.+++..                   +++  .++|+|++|||..... .+
T Consensus        23 ~~~I~il~~~~~-~~~---~~~~l~~~G~~~~~~~~~-------------------~~l--~~~Dglil~GG~~~~~~~~   77 (219)
T 1q7r_A           23 NMKIGVLGLQGA-VRE---HVRAIEACGAEAVIVKKS-------------------EQL--EGLDGLVLPGGESTTMRRL   77 (219)
T ss_dssp             CCEEEEESCGGG-CHH---HHHHHHHTTCEEEEECSG-------------------GGG--TTCSEEEECCCCHHHHHHH
T ss_pred             CCEEEEEeCCCC-cHH---HHHHHHHCCCEEEEECCH-------------------HHH--hhCCEEEECCCChHHHHHH
Confidence            478999977552 122   458889999988877531                   123  5799999999964322 23


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..+..+.++|+++.++++||.+||.|..+|+.+
T Consensus        78 ~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~  110 (219)
T 1q7r_A           78 IDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR  110 (219)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             hhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            334556799999999999999999999999864

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=98.12  E-value=3.2e-06  Score=74.25  Aligned_cols=88  Identities=23%  Similarity=0.327  Sum_probs=63.1

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-h
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-R  297 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-~  297 (405)
                      +.+||+|+-+.+ +   +....+.|++.|+++.+++..                   +++  .++|+|++|||..... .
T Consensus        19 ~~~~I~ii~~~~-~---~~~~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~   73 (208)
T 2iss_D           19 SHMKIGVLGVQG-D---VREHVEALHKLGVETLIVKLP-------------------EQL--DMVDGLILPGGESTTMIR   73 (208)
T ss_dssp             -CCEEEEECSSS-C---HHHHHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECSSCHHHHHH
T ss_pred             CCcEEEEEECCC-c---hHHHHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCcHHHHHh
Confidence            457999997643 3   344677888899888877421                   123  4689999999963222 1


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus        74 ~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~  107 (208)
T 2iss_D           74 ILKEMDMDEKLVERINNGLPVFATCAGVILLAKR  107 (208)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEE
T ss_pred             hhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence            2223446889999999999999999999999875

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.12  E-value=1.4e-05  Score=71.53  Aligned_cols=94  Identities=18%  Similarity=0.224  Sum_probs=68.8

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      |||++|..+.++...  .+.+.|...|++++++....+ .             .+.+ +..++|+|||+||...+.....
T Consensus         1 m~i~vi~h~~~e~~g--~~~~~l~~~g~~~~~~~~~~~-~-------------~~p~-~~~~~d~lii~GGp~~~~~~~~   63 (236)
T 3l7n_A            1 MRIHFILHETFEAPG--AYLAWAALRGHDVSMTKVYRY-E-------------KLPK-DIDDFDMLILMGGPQSPSSTKK   63 (236)
T ss_dssp             CEEEEEECCTTSCCH--HHHHHHHHTTCEEEEEEGGGT-C-------------CCCS-CGGGCSEEEECCCSSCTTCCTT
T ss_pred             CeEEEEeCCCCCCch--HHHHHHHHCCCeEEEEeeeCC-C-------------CCCC-CccccCEEEECCCCCCcccccc
Confidence            588899877665544  345678889999999987654 1             1111 1257999999999754321111


Q ss_pred             ----C--hHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 ----S--RILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ----~--~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                          -  ....++|+++.+.+++|.+||-|..+|+.+
T Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~  100 (236)
T 3l7n_A           64 EFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA  100 (236)
T ss_dssp             TCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHH
T ss_pred             cCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHH
Confidence                1  347899999999999999999999999875

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=98.11  E-value=8.8e-06  Score=73.39  Aligned_cols=95  Identities=19%  Similarity=0.171  Sum_probs=69.8

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-h
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-L  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-~  298 (405)
                      +++|.||..+.+...+.  +...|.+.|++++++....+.+.             .++.  .++|.||||||...... .
T Consensus         3 ~~~vliiqh~~~e~~~~--i~~~l~~~G~~v~v~~~~~~~~~-------------p~~~--~~~d~lIl~GGp~~~~d~~   65 (250)
T 3m3p_A            3 LKPVMIIQFSASEGPGH--FGDFLAGEHIPFQVLRMDRSDPL-------------PAEI--RDCSGLAMMGGPMSANDDL   65 (250)
T ss_dssp             CCCEEEEESSSSCCCHH--HHHHHHHTTCCEEEEEGGGTCCC-------------CSCG--GGSSEEEECCCSSCTTSCC
T ss_pred             CCeEEEEECCCCCCHHH--HHHHHHHCCCeEEEEeccCCCcC-------------cCcc--ccCCEEEECCCCCcccccc
Confidence            46899998777655554  45568899999999987654111             1223  67999999999643321 2


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .....+.++|+++.+.+++|.+||-|..+|+.+
T Consensus        66 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~   98 (250)
T 3m3p_A           66 PWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA   98 (250)
T ss_dssp             TTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            223567899999999999999999999999876

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.07  E-value=5.3e-06  Score=73.48  Aligned_cols=88  Identities=20%  Similarity=0.162  Sum_probs=61.7

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh-c
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-R   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~-~   94 (405)
                      ..+||+|+.+++    .+....+.|+++|+++.++++.                   ++++  ++|.||+|||..... .
T Consensus        22 ~~~~I~il~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------~~l~--~~Dglil~GG~~~~~~~   76 (219)
T 1q7r_A           22 SNMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS-------------------EQLE--GLDGLVLPGGESTTMRR   76 (219)
T ss_dssp             CCCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG-------------------GGGT--TCSEEEECCCCHHHHHH
T ss_pred             CCCEEEEEeCCC----CcHHHHHHHHHCCCEEEEECCH-------------------HHHh--hCCEEEECCCChHHHHH
Confidence            357899997654    1223468889999988887531                   1232  699999999953221 2


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      +..+..+.++|+++.++++||.+||.|.. +|+.+
T Consensus        77 ~~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lL~~~  110 (219)
T 1q7r_A           77 LIDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAKR  110 (219)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEEE
T ss_pred             HhhhhHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            22244567899999999999999999766 67753

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.03  E-value=8.3e-06  Score=70.84  Aligned_cols=86  Identities=21%  Similarity=0.169  Sum_probs=59.5

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hcc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~   95 (405)
                      ||||+|+-+.+ +..+   ..+.|++.|+++.++++.                   ++.  .++|.|++|||.+.. ..+
T Consensus         1 ~m~I~il~~~~-~~~~---~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~~   55 (196)
T 2nv0_A            1 MLTIGVLGLQG-AVRE---HIHAIEACGAAGLVVKRP-------------------EQL--NEVDGLILPGGESTTMRRL   55 (196)
T ss_dssp             CCEEEEECSSS-CCHH---HHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEEccC-CcHH---HHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCChhhHHHH
Confidence            46899996522 2222   358889999988877431                   122  269999999995332 222


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .....+.++|+++.++++||.+||.|.. +|+.
T Consensus        56 ~~~~~~~~~i~~~~~~~~pilgIC~G~q-~l~~   87 (196)
T 2nv0_A           56 IDTYQFMEPLREFAAQGKPMFGTCAGLI-ILAK   87 (196)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHH-HHSB
T ss_pred             hhhHHHHHHHHHHHHCCCcEEEECHHHH-HHHH
Confidence            2334567899999999999999999765 5765

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=98.01  E-value=7.3e-05  Score=81.51  Aligned_cols=101  Identities=12%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             CcCEEEEEeCCCCc-HHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH-
Q 015523          219 RMPRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-  296 (405)
Q Consensus       219 ~~~~V~il~~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~-  296 (405)
                      ..+||+|+.|+|.+ +.|+.   ..|+++|+.+.++..+.  .         ..  .-.++  .++|.|++|||....+ 
T Consensus      1046 ~~pkVaIi~~~G~N~~~~~~---~A~~~aG~~~~~v~~~d--l---------~~--~~~~l--~~~d~lvlPGGfSygD~ 1107 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVNSHVEMA---AAFHRAGFDAIDVHMSD--L---------LG--GRIGL--GNFHALVACGGFSYGDV 1107 (1303)
T ss_dssp             CCCEEEEEECTTCCCHHHHH---HHHHHTTCEEEEEEHHH--H---------HT--TSCCG--GGCSEEEECCSCGGGGT
T ss_pred             CCCEEEEEecCCcCCHHHHH---HHHHHhCCceEEEeecc--c---------cc--CcccH--hhCCEEEECCCCcchhh
Confidence            46899999999875 57755   46667899988875421  0         00  00223  5799999999964222 


Q ss_pred             ---------hhhcChHHHHHHHHHh-hcCCEEEEEchHHHHHHHc-CCCCCC
Q 015523          297 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKH-GLLKAK  337 (405)
Q Consensus       297 ---------~~~~~~~l~~~l~~~~-~~~k~i~aic~g~~~La~a-GlL~g~  337 (405)
                               ....++.+.+.|++++ ++++++.+||+|..+|.++ |||.|.
T Consensus      1108 l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS 1159 (1303)
T ss_dssp             TSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred             hccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCC
Confidence                     2345678888899865 6899999999999999999 999986

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=98.00  E-value=1.2e-05  Score=70.04  Aligned_cols=88  Identities=17%  Similarity=0.147  Sum_probs=61.8

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh-
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL-  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~-  298 (405)
                      ++||+|+-+..-+..+   +.+.|++.|+++.+++..                   +++  .++|.|++|||....... 
T Consensus         2 ~~~I~iid~~~~~~~~---~~~~l~~~G~~~~~~~~~-------------------~~l--~~~d~lil~G~g~~~~~~~   57 (200)
T 1ka9_H            2 RMKALLIDYGSGNLRS---AAKALEAAGFSVAVAQDP-------------------KAH--EEADLLVLPGQGHFGQVMR   57 (200)
T ss_dssp             -CEEEEECSSCSCHHH---HHHHHHHTTCEEEEESST-------------------TSC--SSCSEEEECCCSCHHHHHH
T ss_pred             ccEEEEEeCCCccHHH---HHHHHHHCCCeEEEecCh-------------------HHc--ccCCEEEECCCCcHHHHHH
Confidence            4689888543223333   578999999988877421                   123  579999999943111211 


Q ss_pred             -hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 -QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 -~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       ..+..+.++|+++.++++||.+||.|..+|+.+
T Consensus        58 ~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   91 (200)
T 1ka9_H           58 AFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   91 (200)
T ss_dssp             TTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             HHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHh
Confidence             122457899999999999999999999999998

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.99  E-value=8.5e-06  Score=70.43  Aligned_cols=87  Identities=16%  Similarity=0.234  Sum_probs=64.1

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccc-hHhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-AERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~-~~~~  298 (405)
                      +++|+|+..+|    .+....+.|++.|+++.+++..                   +++  .++|.|++|||... ...+
T Consensus         2 ~p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------~~l--~~~dglil~GG~~~~~~~~   56 (191)
T 2ywd_A            2 RGVVGVLALQG----DFREHKEALKRLGIEAKEVRKK-------------------EHL--EGLKALIVPGGESTTIGKL   56 (191)
T ss_dssp             -CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG-------------------GGG--TTCSEEEECSSCHHHHHHH
T ss_pred             CcEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh-------------------hhh--ccCCEEEECCCChhhhHHh
Confidence            47899998765    2345788999999888776421                   122  46899999999522 2223


Q ss_pred             hcChHHHHHHHHHhhcC-CEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~-k~i~aic~g~~~La~a  331 (405)
                      ..+..+.++|+++.+++ +||.+||.|..+|+.+
T Consensus        57 ~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~   90 (191)
T 2ywd_A           57 AREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE   90 (191)
T ss_dssp             HHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred             hhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence            32456789999999999 9999999999999875

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=97.97  E-value=9.3e-06  Score=71.27  Aligned_cols=90  Identities=17%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             CCCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           14 PSFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        14 ~~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      +.+++||+|+-+++    .+....+.|++.|+++.++++..                   +++  ++|+||+|||.+...
T Consensus        17 ~~~~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~~-------------------~l~--~~d~iil~GG~~~~~   71 (208)
T 2iss_D           17 RGSHMKIGVLGVQG----DVREHVEALHKLGVETLIVKLPE-------------------QLD--MVDGLILPGGESTTM   71 (208)
T ss_dssp             ---CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSGG-------------------GGG--GCSEEEECSSCHHHH
T ss_pred             CCCCcEEEEEECCC----chHHHHHHHHHCCCEEEEeCChH-------------------HHh--hCCEEEECCCcHHHH
Confidence            34567999996633    44556788888898888774221                   122  689999999953221


Q ss_pred             -ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           94 -RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        94 -~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                       .+..+..+.++|+++.++++||.+||.|.. +|+.+
T Consensus        72 ~~~~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~  107 (208)
T 2iss_D           72 IRILKEMDMDEKLVERINNGLPVFATCAGVI-LLAKR  107 (208)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCEEEETHHHH-HHEEE
T ss_pred             HhhhhhhhHHHHHHHHHHCCCeEEEECHHHH-HHHHH
Confidence             122234467899999999999999999765 57753

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=97.89  E-value=6.3e-05  Score=67.28  Aligned_cols=94  Identities=15%  Similarity=0.163  Sum_probs=65.8

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD   97 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~   97 (405)
                      |||.+|..+.++...  .+.+++++.|++++++....+.              .+.+ +..+||+|||+||...+.....
T Consensus         1 m~i~vi~h~~~e~~g--~~~~~l~~~g~~~~~~~~~~~~--------------~~p~-~~~~~d~lii~GGp~~~~~~~~   63 (236)
T 3l7n_A            1 MRIHFILHETFEAPG--AYLAWAALRGHDVSMTKVYRYE--------------KLPK-DIDDFDMLILMGGPQSPSSTKK   63 (236)
T ss_dssp             CEEEEEECCTTSCCH--HHHHHHHHTTCEEEEEEGGGTC--------------CCCS-CGGGCSEEEECCCSSCTTCCTT
T ss_pred             CeEEEEeCCCCCCch--HHHHHHHHCCCeEEEEeeeCCC--------------CCCC-CccccCEEEECCCCCCcccccc
Confidence            589999877666544  4557788999999999876541              1111 1237999999999432221111


Q ss_pred             C------hHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           98 C------EILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        98 ~------~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      +      ....++|+++++.++||.+||-|.. +|+.+
T Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~Q-lL~~~  100 (236)
T 3l7n_A           64 EFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQ-LMGVA  100 (236)
T ss_dssp             TCTTCCHHHHHHHHHHHHHTTCEEEEETHHHH-HHHHH
T ss_pred             cCcccchHHHHHHHHHHHHcCCCEEEEchHHH-HHHHH
Confidence            1      3478999999999999999999765 57764

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=97.85  E-value=3.3e-05  Score=67.26  Aligned_cols=88  Identities=17%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc-
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL-   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~-   95 (405)
                      +|||+|+-+.   ...+..+.+.|++.|+++.+++..                   +++  .++|.||+||+....... 
T Consensus         2 ~~~I~iid~~---~~~~~~~~~~l~~~G~~~~~~~~~-------------------~~l--~~~d~lil~G~g~~~~~~~   57 (200)
T 1ka9_H            2 RMKALLIDYG---SGNLRSAAKALEAAGFSVAVAQDP-------------------KAH--EEADLLVLPGQGHFGQVMR   57 (200)
T ss_dssp             -CEEEEECSS---CSCHHHHHHHHHHTTCEEEEESST-------------------TSC--SSCSEEEECCCSCHHHHHH
T ss_pred             ccEEEEEeCC---CccHHHHHHHHHHCCCeEEEecCh-------------------HHc--ccCCEEEECCCCcHHHHHH
Confidence            3689888443   223344589999999988887421                   122  269999999942211111 


Q ss_pred             -ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 -RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 -~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                       ..+..+.++|+++.++++||.+||.|.. +|+.+
T Consensus        58 ~l~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   91 (200)
T 1ka9_H           58 AFQESGFVERVRRHLERGLPFLGICVGMQ-VLYEG   91 (200)
T ss_dssp             TTSSSCTHHHHHHHHHTTCCEEECTHHHH-TTSSE
T ss_pred             HHHhcCHHHHHHHHHHcCCeEEEEcHHHH-HHHHh
Confidence             1124578999999999999999999765 68876

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=97.82  E-value=3.8e-05  Score=66.24  Aligned_cols=86  Identities=17%  Similarity=0.187  Sum_probs=62.1

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcCh
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR  302 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~  302 (405)
                      |+|+=+.+..   ...+.+.|+++|+++.++..+.                .++++...++|.|++|||. .+.   +..
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~----------------~~~~~~~~~~dglil~Gg~-~~~---~~~   59 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGP-SLE---NTG   59 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCS-CTT---CCT
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC----------------ChHHhcccCCCEEEECCCC-Chh---hhh
Confidence            7777555444   3467788899999988876432                1223211469999999995 332   245


Q ss_pred             HHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          303 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       303 ~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+.++++++.+.+++|.+||.|..+|+.+
T Consensus        60 ~~~~~i~~~~~~~~PilGIC~G~Q~l~~~   88 (189)
T 1wl8_A           60 NCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (189)
T ss_dssp             THHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             hHHHHHHHHhhCCCeEEEEcHHHHHHHHH
Confidence            56888987778999999999999999875

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.75  E-value=3.5e-05  Score=66.45  Aligned_cols=86  Identities=19%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh-hhccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRLR   96 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~-~~~~~   96 (405)
                      ++|+|+..++    .+....+.|++.|+++.++....                   +.+  ++|.|++|||.+. ...+.
T Consensus         3 p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~~-------------------~l~--~~dglil~GG~~~~~~~~~   57 (191)
T 2ywd_A            3 GVVGVLALQG----DFREHKEALKRLGIEAKEVRKKE-------------------HLE--GLKALIVPGGESTTIGKLA   57 (191)
T ss_dssp             CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSGG-------------------GGT--TCSEEEECSSCHHHHHHHH
T ss_pred             cEEEEEecCC----chHHHHHHHHHCCCEEEEeCChh-------------------hhc--cCCEEEECCCChhhhHHhh
Confidence            5899998764    34567899999998877764211                   222  5899999999422 22232


Q ss_pred             cChHHHHHHHHHHHcC-CEEEEEccchHHhhhhc
Q 015523           97 DCEILKKITSKQAEEK-RLYGAICAAPAVTLLPW  129 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~-~~i~aic~g~~~~La~a  129 (405)
                      .+..+.++|+++.+++ +||.+||.|.. +|+.+
T Consensus        58 ~~~~~~~~i~~~~~~~~~PilGiC~G~Q-~l~~~   90 (191)
T 2ywd_A           58 REYGIEDEVRKRVEEGSLALFGTCAGAI-WLAKE   90 (191)
T ss_dssp             HHTTHHHHHHHHHHTTCCEEEEETHHHH-HHEEE
T ss_pred             hhhhHHHHHHHHHHCCCCeEEEECHHHH-HHHHH
Confidence            2356788999999999 99999999755 57753

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=97.74  E-value=8e-05  Score=81.22  Aligned_cols=101  Identities=14%  Similarity=0.095  Sum_probs=72.0

Q ss_pred             CcEEEEEecCCCch-hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGFGTEE-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~-~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      .+||+|+.|+|.+- .++   ...|+++|+++.++..+.-           ..+  -.++  .+||.|++|||....+.+
T Consensus      1047 ~pkVaIi~~~G~N~~~~~---~~A~~~aG~~~~~v~~~dl-----------~~~--~~~l--~~~d~lvlPGGfSygD~l 1108 (1303)
T 3ugj_A         1047 RPKVAVLREQGVNSHVEM---AAAFHRAGFDAIDVHMSDL-----------LGG--RIGL--GNFHALVACGGFSYGDVL 1108 (1303)
T ss_dssp             CCEEEEEECTTCCCHHHH---HHHHHHTTCEEEEEEHHHH-----------HTT--SCCG--GGCSEEEECCSCGGGGTT
T ss_pred             CCEEEEEecCCcCCHHHH---HHHHHHhCCceEEEeeccc-----------ccC--cccH--hhCCEEEECCCCcchhhh
Confidence            45999999999885 665   5677788999988754210           000  0122  379999999995333322


Q ss_pred             ----------ccChHHHHHHHHHH-HcCCEEEEEccchHHhhhhc-CCCCCcc
Q 015523           96 ----------RDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPW-GLLRRKQ  136 (405)
Q Consensus        96 ----------~~~~~~~~~l~~~~-~~~~~i~aic~g~~~~La~a-gll~g~~  136 (405)
                                ..++.+.+.+++++ ++++++.+||+|.+ +|.++ |+|.|..
T Consensus      1109 ~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~Q-lL~e~~gllPg~~ 1160 (1303)
T 3ugj_A         1109 GAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPGSE 1160 (1303)
T ss_dssp             STTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTTCT
T ss_pred             ccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHH-HHHHhcCcCCCCC
Confidence                      34567778888866 57999999999776 79998 9999863

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=97.71  E-value=5.3e-05  Score=65.65  Aligned_cols=90  Identities=17%  Similarity=0.093  Sum_probs=60.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcCh
Q 015523          223 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR  302 (405)
Q Consensus       223 V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~  302 (405)
                      |+|+=..+..   ...+.+.|++.|+++.++..+..               .+++++..++|.|+++||........+.+
T Consensus         4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dglil~gG~~~~~~~~~~~   65 (195)
T 1qdl_B            4 TLIIDNYDSF---VYNIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKREDIG   65 (195)
T ss_dssp             EEEEECSCSS---HHHHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred             EEEEECCCch---HHHHHHHHHhCCCEEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChhhhhhhh
Confidence            7777543333   23678899999999988765421               22333212689999988754333221123


Q ss_pred             HHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          303 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       303 ~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ...++++++ +.++||.+||.|..+|+.+
T Consensus        66 ~~~~~i~~~-~~~~PvLGIC~G~QlL~~~   93 (195)
T 1qdl_B           66 VSLDVIKYL-GKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             THHHHHHHH-TTTSCEEEETHHHHHHHHH
T ss_pred             HHHHHHHHh-cCCCcEEEEehHHHHHHHH
Confidence            356888875 7899999999999999985

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=97.70  E-value=0.0001  Score=66.38  Aligned_cols=95  Identities=12%  Similarity=0.013  Sum_probs=66.0

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhc-c
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-L   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~-~   95 (405)
                      +|||.||..+.++..+  .+.+.|++.|++++++....+.+.         |    .+.  .+||.||||||...... .
T Consensus         3 ~~~vliiqh~~~e~~~--~i~~~l~~~G~~v~v~~~~~~~~~---------p----~~~--~~~d~lIl~GGp~~~~d~~   65 (250)
T 3m3p_A            3 LKPVMIIQFSASEGPG--HFGDFLAGEHIPFQVLRMDRSDPL---------P----AEI--RDCSGLAMMGGPMSANDDL   65 (250)
T ss_dssp             CCCEEEEESSSSCCCH--HHHHHHHHTTCCEEEEEGGGTCCC---------C----SCG--GGSSEEEECCCSSCTTSCC
T ss_pred             CCeEEEEECCCCCCHH--HHHHHHHHCCCeEEEEeccCCCcC---------c----Ccc--ccCCEEEECCCCCcccccc
Confidence            5689888877665544  445678999999999987654111         1    122  36999999999422211 1


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .......++|+++.+.++||.+||.|.. +|+.+
T Consensus        66 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-ll~~~   98 (250)
T 3m3p_A           66 PWMPTLLALIRDAVAQRVPVIGHCLGGQ-LLAKA   98 (250)
T ss_dssp             TTHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            1224578899999999999999999766 57764

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.69  E-value=4.7e-05  Score=67.66  Aligned_cols=87  Identities=15%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhC---CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRA---KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~---~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      .++|+|+.+++.. .   ...+.|.++   |+++.+++..                   +++  .++|+||+|||.....
T Consensus         3 ~~~I~Il~~~~~~-~---~~~~~l~~~~~~G~~~~~~~~~-------------------~~l--~~~dglil~GG~~~~~   57 (227)
T 2abw_A            3 EITIGVLSLQGDF-E---PHINHFIKLQIPSLNIIQVRNV-------------------HDL--GLCDGLVIPGGESTTV   57 (227)
T ss_dssp             CEEEEEECTTSCC-H---HHHHHHHTTCCTTEEEEEECSH-------------------HHH--HTCSEEEECCSCHHHH
T ss_pred             CcEEEEEeCCCCc-H---HHHHHHHHhccCCeEEEEEcCc-------------------ccc--ccCCEEEECCCcHHHH
Confidence            3689999877532 2   357778877   7666554311                   223  4589999999963222


Q ss_pred             -hhhcC--hHHHHHHHHHhhc-CCEEEEEchHHHHHHHc
Q 015523          297 -RLQKS--RILKKLLKEQKVA-GRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       297 -~~~~~--~~l~~~l~~~~~~-~k~i~aic~g~~~La~a  331 (405)
                       .+..+  ..+.++|+++.+. ++||.+||.|..+|+.+
T Consensus        58 ~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~   96 (227)
T 2abw_A           58 RRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   96 (227)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence             22232  5689999999999 99999999999999875

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.56  E-value=0.0001  Score=66.07  Aligned_cols=94  Identities=21%  Similarity=0.216  Sum_probs=63.1

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh---
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---  297 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~---  297 (405)
                      .||.||-  .........+...|+..|+++.++-.+.+             +...+++  .++|.||+|||......   
T Consensus        13 ~~~~~i~--~~~~~~~~~i~~~l~~~G~~v~v~~~~~~-------------~~~~~~l--~~~Dglil~GG~~~~~~~~~   75 (239)
T 1o1y_A           13 VRVLAIR--HVEIEDLGMMEDIFREKNWSFDYLDTPKG-------------EKLERPL--EEYSLVVLLGGYMGAYEEEK   75 (239)
T ss_dssp             CEEEEEC--SSTTSSCTHHHHHHHHTTCEEEEECGGGT-------------CCCSSCG--GGCSEEEECCCSCCTTCTTT
T ss_pred             eEEEEEE--CCCCCCchHHHHHHHhCCCcEEEeCCcCc-------------cccccch--hcCCEEEECCCCccccCCcc
Confidence            4555554  44444444678888899998886643321             1011223  57899999998643322   


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ......+.++|+++.++++||.+||-|..+|+.+
T Consensus        76 ~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~a  109 (239)
T 1o1y_A           76 YPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  109 (239)
T ss_dssp             CTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHH
Confidence            1112368899999989999999999999999875

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.54  E-value=7.7e-05  Score=66.28  Aligned_cols=87  Identities=14%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhc---CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-   92 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~---~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-   92 (405)
                      .++|+|+.+++-    +....+.|++.   |+++..+.+.                   ++++  ++|.||+|||.... 
T Consensus         3 ~~~I~Il~~~~~----~~~~~~~l~~~~~~G~~~~~~~~~-------------------~~l~--~~dglil~GG~~~~~   57 (227)
T 2abw_A            3 EITIGVLSLQGD----FEPHINHFIKLQIPSLNIIQVRNV-------------------HDLG--LCDGLVIPGGESTTV   57 (227)
T ss_dssp             CEEEEEECTTSC----CHHHHHHHHTTCCTTEEEEEECSH-------------------HHHH--TCSEEEECCSCHHHH
T ss_pred             CcEEEEEeCCCC----cHHHHHHHHHhccCCeEEEEEcCc-------------------cccc--cCCEEEECCCcHHHH
Confidence            368999987742    22357888887   7666555311                   1222  58999999995322 


Q ss_pred             hccccC--hHHHHHHHHHHHc-CCEEEEEccchHHhhhhc
Q 015523           93 VRLRDC--EILKKITSKQAEE-KRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        93 ~~~~~~--~~~~~~l~~~~~~-~~~i~aic~g~~~~La~a  129 (405)
                      ..+..+  ..+.++|+++.+. ++||.+||.|-. +|+.+
T Consensus        58 ~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~Q-lL~~~   96 (227)
T 2abw_A           58 RRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   96 (227)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHH-HHHHH
Confidence            122222  4678999999999 999999999655 67764

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.48  E-value=0.00018  Score=61.65  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=56.1

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-hh
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-LQ  299 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-~~  299 (405)
                      |||+|+-.+|.    +....+.|++.|+++.++...                   +++  .++|.|++|||...... +.
T Consensus         1 m~i~vl~~~g~----~~~~~~~l~~~G~~~~~~~~~-------------------~~~--~~~dglil~GG~~~~~~~~~   55 (186)
T 2ywj_A            1 MIIGVLAIQGD----VEEHEEAIKKAGYEAKKVKRV-------------------EDL--EGIDALIIPGGESTAIGKLM   55 (186)
T ss_dssp             CEEEEECSSSC----CHHHHHHHHHTTSEEEEECSG-------------------GGG--TTCSEEEECCSCHHHHHHHH
T ss_pred             CEEEEEecCcc----hHHHHHHHHHCCCEEEEECCh-------------------HHh--ccCCEEEECCCCchhhhhhh
Confidence            57889865442    223468889999888776420                   123  56899999999632221 11


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ....+.++++   +.++||.+||.|..+|+.+
T Consensus        56 ~~~~~~~~i~---~~~~PilGIC~G~Qll~~~   84 (186)
T 2ywj_A           56 KKYGLLEKIK---NSNLPILGTCAGMVLLSKG   84 (186)
T ss_dssp             HHTTHHHHHH---TCCCCEEEETHHHHHHSSC
T ss_pred             hccCHHHHHH---hcCCcEEEECHHHHHHHHH
Confidence            1223455555   7899999999999999986

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.46  E-value=0.00021  Score=62.06  Aligned_cols=87  Identities=18%  Similarity=0.277  Sum_probs=58.2

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCC-----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAK-----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  295 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~-----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~  295 (405)
                      |||+|+-+..-+..++   ...|++.|     ++++++.. .              +      + .++|.|++|||....
T Consensus         1 m~I~iid~~~g~~~s~---~~~l~~~G~~~~~~~~~~~~~-~--------------~------~-~~~dglilpG~g~~~   55 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNL---YRGVKRASENFEDVSIELVES-P--------------R------N-DLYDLLFIPGVGHFG   55 (201)
T ss_dssp             CEEEEECCSSSCCHHH---HHHHHHHSTTBSSCEEEEECS-C--------------C------S-SCCSEEEECCCSCSH
T ss_pred             CEEEEEecCCchHHHH---HHHHHHcCCCCCceEEEEECC-C--------------c------c-cCCCEEEECCCCcHH
Confidence            5788887663233333   35677777     77776642 1              1      1 468999999953211


Q ss_pred             Hhhh--cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523          296 ERLQ--KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  332 (405)
Q Consensus       296 ~~~~--~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG  332 (405)
                      ....  .+..+.++|+++.++++||.+||.|..+|+.+.
T Consensus        56 ~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~   94 (201)
T 1gpw_B           56 EGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES   94 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEE
T ss_pred             HHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhh
Confidence            1111  112377899999899999999999999999863

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.35  E-value=0.00039  Score=61.02  Aligned_cols=90  Identities=19%  Similarity=0.207  Sum_probs=59.1

Q ss_pred             CCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCC-ccchH
Q 015523          218 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG-VAGAE  296 (405)
Q Consensus       218 ~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG-~~~~~  296 (405)
                      ..|+||.++-+.+-.   .....+.|+++|+.+.++..+.                ..+++  .++|.||+||| .....
T Consensus        11 ~~~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~----------------~~~~l--~~~DglIl~GG~p~~~~   69 (212)
T 2a9v_A           11 HHMLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI----------------DSSEL--DGLDGLVLSGGAPNIDE   69 (212)
T ss_dssp             CCCCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS----------------CGGGG--TTCSEEEEEEECSCGGG
T ss_pred             cccceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC----------------CHHHH--hCCCEEEECCCCCCCCc
Confidence            357888887654333   2346777888888877665432                23444  45999999999 44333


Q ss_pred             hhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          297 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       297 ~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .....+.+.+++   .+.++||.+||-|..+|+.+
T Consensus        70 ~~~~~~~l~~~~---~~~~~PiLGIC~G~Qll~~~  101 (212)
T 2a9v_A           70 ELDKLGSVGKYI---DDHNYPILGICVGAQFIALH  101 (212)
T ss_dssp             TGGGHHHHHHHH---HHCCSCEEEETHHHHHHHHH
T ss_pred             ccccchhHHHHH---HhCCCCEEEEChHHHHHHHH
Confidence            221223344443   57899999999999999875

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=97.31  E-value=0.00037  Score=59.91  Aligned_cols=86  Identities=14%  Similarity=0.105  Sum_probs=59.4

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccCh
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE   99 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~   99 (405)
                      |+|+=+.+..   ...+.+.|++.|+++.++.....                ++++...++|.|++|||. .+.   +..
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dglil~Gg~-~~~---~~~   59 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTTP----------------LEEIKAMNPKGIIFSGGP-SLE---NTG   59 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTCC----------------HHHHHHTCCSEEEECCCS-CTT---CCT
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCCC----------------hHHhcccCCCEEEECCCC-Chh---hhh
Confidence            6666554433   44678899999999988875421                112211259999999993 332   245


Q ss_pred             HHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          100 ILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       100 ~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ...++++++.++++||.+||.|.. +|+.+
T Consensus        60 ~~~~~i~~~~~~~~PilGIC~G~Q-~l~~~   88 (189)
T 1wl8_A           60 NCEKVLEHYDEFNVPILGICLGHQ-LIAKF   88 (189)
T ss_dssp             THHHHHHTGGGTCSCEEEETHHHH-HHHHH
T ss_pred             hHHHHHHHHhhCCCeEEEEcHHHH-HHHHH
Confidence            568889877789999999999766 57764

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.17  E-value=0.0009  Score=58.03  Aligned_cols=87  Identities=17%  Similarity=0.231  Sum_probs=56.2

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcC-----CEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAG-----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS   92 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~-----~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~   92 (405)
                      |||+||-+..-+..+   +.+.|++.|     +++.++..  .                 ++   .++|.||+||+....
T Consensus         1 m~I~iid~~~g~~~s---~~~~l~~~G~~~~~~~~~~~~~--~-----------------~~---~~~dglilpG~g~~~   55 (201)
T 1gpw_B            1 MRIGIISVGPGNIMN---LYRGVKRASENFEDVSIELVES--P-----------------RN---DLYDLLFIPGVGHFG   55 (201)
T ss_dssp             CEEEEECCSSSCCHH---HHHHHHHHSTTBSSCEEEEECS--C-----------------CS---SCCSEEEECCCSCSH
T ss_pred             CEEEEEecCCchHHH---HHHHHHHcCCCCCceEEEEECC--C-----------------cc---cCCCEEEECCCCcHH
Confidence            578998665323333   346777777     77777642  1                 02   368999999952111


Q ss_pred             hccc--cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523           93 VRLR--DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  130 (405)
Q Consensus        93 ~~~~--~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag  130 (405)
                      ....  .+..+.++|+++.++++||.+||.|-. +|+.+.
T Consensus        56 ~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~~   94 (201)
T 1gpw_B           56 EGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQ-LLFEES   94 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH-TTSSEE
T ss_pred             HHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHH-HHHHhh
Confidence            1110  112367899999999999999999755 677654

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.14  E-value=0.00061  Score=60.92  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc---c
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL---R   96 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~---~   96 (405)
                      |-|++...+.......+.++|++.|+++.++-.+.+             +...+++  ..+|.||+|||.......   .
T Consensus        13 ~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~-------------~~~~~~l--~~~Dglil~GG~~~~~~~~~~~   77 (239)
T 1o1y_A           13 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKG-------------EKLERPL--EEYSLVVLLGGYMGAYEEEKYP   77 (239)
T ss_dssp             CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGT-------------CCCSSCG--GGCSEEEECCCSCCTTCTTTCT
T ss_pred             eEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCc-------------cccccch--hcCCEEEECCCCccccCCccCh
Confidence            444444555555566788999999998886643321             0000122  369999999984222211   1


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ....+.++|+++.++++||.+||-|-. +|+.+
T Consensus        78 ~l~~~~~~i~~~~~~~~PiLGIC~G~Q-lL~~a  109 (239)
T 1o1y_A           78 FLKYEFQLIEEILKKEIPFLGICLGSQ-MLAKV  109 (239)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEchhHH-HHHHH
Confidence            113578899999999999999999765 67765

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=97.14  E-value=0.00046  Score=59.68  Aligned_cols=90  Identities=10%  Similarity=0.070  Sum_probs=56.4

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccCh
Q 015523           20 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE   99 (405)
Q Consensus        20 i~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~   99 (405)
                      |+|+=..+..   ...+.+.|++.|+++.++..+..               .++++...+||.+|++||........+.+
T Consensus         4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dglil~gG~~~~~~~~~~~   65 (195)
T 1qdl_B            4 TLIIDNYDSF---VYNIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKREDIG   65 (195)
T ss_dssp             EEEEECSCSS---HHHHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred             EEEEECCCch---HHHHHHHHHhCCCEEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChhhhhhhh
Confidence            6666533322   24678899999999988875431               11122211489999988732222111122


Q ss_pred             HHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          100 ILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       100 ~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ...++++++ +.++||.+||.|.. +|+.+
T Consensus        66 ~~~~~i~~~-~~~~PvLGIC~G~Q-lL~~~   93 (195)
T 1qdl_B           66 VSLDVIKYL-GKRTPILGVCLGHQ-AIGYA   93 (195)
T ss_dssp             THHHHHHHH-TTTSCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHh-cCCCcEEEEehHHH-HHHHH
Confidence            346788874 78999999999766 67764

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=97.09  E-value=0.0014  Score=62.39  Aligned_cols=87  Identities=14%  Similarity=0.096  Sum_probs=65.1

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      ++|+++=+ |+.    ....+.|.+.|+.+.++-.+.                ..+++...++|.||++||..+..   .
T Consensus       191 ~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~----------------~~e~i~~~~~DGliLsGGPgdp~---~  246 (379)
T 1a9x_B          191 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT----------------SAEDVLKMNPDGIFLSNGPGDPA---P  246 (379)
T ss_dssp             EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC----------------CHHHHHTTCCSEEEECCCSBCST---T
T ss_pred             CEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccC----------------CHHHHhhcCCCEEEEeCCCCChH---H
Confidence            57888877 665    347888889999888774332                12222224689999999964433   3


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ....+++|+++..+++||.+||-|..+|+.+
T Consensus       247 ~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A  277 (379)
T 1a9x_B          247 CDYAITAIQKFLETDIPVFGICLGHQLLALA  277 (379)
T ss_dssp             CHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECchHHHHHHH
Confidence            4678899999999999999999999999875

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.08  E-value=0.00086  Score=57.38  Aligned_cols=83  Identities=16%  Similarity=0.144  Sum_probs=53.7

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh-ccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RLR   96 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~-~~~   96 (405)
                      |||+|+-.+|    .+....+.|++.|+++.++...                   +++  .++|.|++|||..... .+.
T Consensus         1 m~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~-------------------~~~--~~~dglil~GG~~~~~~~~~   55 (186)
T 2ywj_A            1 MIIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV-------------------EDL--EGIDALIIPGGESTAIGKLM   55 (186)
T ss_dssp             CEEEEECSSS----CCHHHHHHHHHTTSEEEEECSG-------------------GGG--TTCSEEEECCSCHHHHHHHH
T ss_pred             CEEEEEecCc----chHHHHHHHHHCCCEEEEECCh-------------------HHh--ccCCEEEECCCCchhhhhhh
Confidence            5899996543    2333468899999888776421                   122  2589999999942221 111


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ....+.++++   +.++||.+||.|-. +|+.+
T Consensus        56 ~~~~~~~~i~---~~~~PilGIC~G~Q-ll~~~   84 (186)
T 2ywj_A           56 KKYGLLEKIK---NSNLPILGTCAGMV-LLSKG   84 (186)
T ss_dssp             HHTTHHHHHH---TCCCCEEEETHHHH-HHSSC
T ss_pred             hccCHHHHHH---hcCCcEEEECHHHH-HHHHH
Confidence            1223555555   78899999999755 68776

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=97.06  E-value=0.00025  Score=62.06  Aligned_cols=87  Identities=17%  Similarity=0.119  Sum_probs=56.9

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      .++|+|+=|-.-+.   ..+...|++.|++++++..                   .+++  .++|.||+||+- ......
T Consensus         2 ~~~I~iiD~g~~n~---~si~~al~~~G~~~~v~~~-------------------~~~l--~~~D~lilPG~g-~~~~~~   56 (211)
T 4gud_A            2 TQNVVIIDTGCANI---SSVKFAIERLGYAVTISRD-------------------PQVV--LAADKLFLPGVG-TASEAM   56 (211)
T ss_dssp             -CCEEEECCCCTTH---HHHHHHHHHTTCCEEEECC-------------------HHHH--HHCSEEEECCCS-CHHHHH
T ss_pred             CCEEEEEECCCChH---HHHHHHHHHCCCEEEEECC-------------------HHHH--hCCCEEEECCCC-CHHHHH
Confidence            46788885432233   4466778889998886421                   1233  457999999963 233222


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .......+++...+.++||.+||.|..+|+.+
T Consensus        57 ~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~   88 (211)
T 4gud_A           57 KNLTERDLIELVKRVEKPLLGICLGMQLLGKL   88 (211)
T ss_dssp             HHHHHTTCHHHHHHCCSCEEEETHHHHTTSSE
T ss_pred             HHHHhcChHHHHHHcCCCEEEEchhHhHHHHH
Confidence            22233345677778999999999999999764

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=96.96  E-value=0.00029  Score=61.72  Aligned_cols=86  Identities=16%  Similarity=0.074  Sum_probs=54.2

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD   97 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~   97 (405)
                      +||+|+=|-   ..-+..+...|++.|+++.++.. .                  +++.  ++|.||+||+. .+.....
T Consensus         3 ~~I~iiD~g---~~n~~si~~al~~~G~~~~v~~~-~------------------~~l~--~~D~lilPG~g-~~~~~~~   57 (211)
T 4gud_A            3 QNVVIIDTG---CANISSVKFAIERLGYAVTISRD-P------------------QVVL--AADKLFLPGVG-TASEAMK   57 (211)
T ss_dssp             CCEEEECCC---CTTHHHHHHHHHHTTCCEEEECC-H------------------HHHH--HCSEEEECCCS-CHHHHHH
T ss_pred             CEEEEEECC---CChHHHHHHHHHHCCCEEEEECC-H------------------HHHh--CCCEEEECCCC-CHHHHHH
Confidence            478887332   33345677888999998887531 1                  1222  57999999952 2222211


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ......+++...+.++||.+||.|-. +|+.+
T Consensus        58 ~~~~~~~i~~~~~~~~PvlGIClG~Q-lL~~~   88 (211)
T 4gud_A           58 NLTERDLIELVKRVEKPLLGICLGMQ-LLGKL   88 (211)
T ss_dssp             HHHHTTCHHHHHHCCSCEEEETHHHH-TTSSE
T ss_pred             HHHhcChHHHHHHcCCCEEEEchhHh-HHHHH
Confidence            12223456777788999999999655 67764

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=96.88  E-value=0.00049  Score=60.00  Aligned_cols=98  Identities=14%  Similarity=0.084  Sum_probs=66.4

Q ss_pred             cCEEEEEeCCCC---cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-
Q 015523          220 MPRVLIPIANGS---EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-  295 (405)
Q Consensus       220 ~~~V~il~~~g~---~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-  295 (405)
                      .+||+++-+-.-   .+.-+......|++.|++++.+.....           .++...+.+  .+.|+|++|||.... 
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~-----------~~~~~~~~l--~~ad~I~l~GG~~~~l   93 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE-----------SLGEITTKL--RKNDFIYVTGGNTFFL   93 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS-----------CHHHHHHHH--HHSSEEEECCSCHHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC-----------ChHHHHHHH--HhCCEEEECCCCHHHH
Confidence            479998865321   112345678899999998877643321           111111223  567999999985211 


Q ss_pred             HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      ....+...+.+.|++..++|++++++|.|+.+++.
T Consensus        94 ~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~  128 (206)
T 3l4e_A           94 LQELKRTGADKLILEEIAAGKLYIGESAGAVITSP  128 (206)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred             HHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence            12345667889999999999999999999999975

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=96.85  E-value=0.00065  Score=60.28  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=65.3

Q ss_pred             CcCEEEEEeCCC---CcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523          219 RMPRVLIPIANG---SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  295 (405)
Q Consensus       219 ~~~~V~il~~~g---~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~  295 (405)
                      ..+||+|+-+-.   -.+.-+......|++.|+++..+...               +...+++  .+.|+|++|||....
T Consensus        30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~---------------~d~~~~l--~~ad~I~lpGG~~~~   92 (229)
T 1fy2_A           30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRV---------------ADPLAAI--EKAEIIIVGGGNTFQ   92 (229)
T ss_dssp             TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSS---------------SCHHHHH--HHCSEEEECCSCHHH
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEecc---------------ccHHHHH--hcCCEEEECCCcHHH
Confidence            347899887642   22333456778888888876554211               1111334  568999999985211


Q ss_pred             -HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC
Q 015523          296 -ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG  332 (405)
Q Consensus       296 -~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG  332 (405)
                       ....+...+.+.|++..++|++++++|.|+.+|+...
T Consensus        93 ~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A           93 LLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             HHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence             1233455688899999999999999999999997643

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=96.69  E-value=0.00044  Score=60.89  Aligned_cols=88  Identities=17%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             cCEEEEEeCC-CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~~-g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      .++|+|+=+. ++.    ..+...|++.|+.+.++..+..                .++++..++|.|++|||.......
T Consensus        24 ~~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~----------------~~~l~~~~~dglil~Gg~~~~~~~   83 (218)
T 2vpi_A           24 EGAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP----------------AFAIKEQGFRAIIISGGPNSVYAE   83 (218)
T ss_dssp             TTCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC----------------HHHHHHHTCSEEEEEC--------
T ss_pred             CCeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC----------------hHHHhhcCCCEEEECCCCcccccc
Confidence            3689999554 553    3567888889988887754431                122212468999999996322211


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       ..   ..+.+...+.++||.+||.|..+|+.+
T Consensus        84 -~~---~~~~~~~~~~~~PilGIC~G~Qll~~~  112 (218)
T 2vpi_A           84 -DA---PWFDPAIFTIGKPVLGICYGMQMMNKV  112 (218)
T ss_dssp             --C---CCCCGGGGTSSCCEEEETHHHHHHHHH
T ss_pred             -cc---hhHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence             11   112234457899999999999999885

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=96.61  E-value=0.0035  Score=57.14  Aligned_cols=96  Identities=11%  Similarity=0.072  Sum_probs=59.5

Q ss_pred             CEEEEEeCCC--CcHHHHHHHHHHHHh----CCCeEEEEeecCCceeecCCCcEEeeCCCc-cCcCCCCccEEEEcCCcc
Q 015523          221 PRVLIPIANG--SEEIEIVTIVDILRR----AKVDVVVASVERSTQIVASQGVKIIADKSI-SDAAESVYDLIILPGGVA  293 (405)
Q Consensus       221 ~~V~il~~~g--~~~~e~~~~~~~l~~----~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l-~~~~~~~~D~livpgG~~  293 (405)
                      .+|+|+.-.|  +.+ .+..+...|..    .+.++.++..+.. .+....+..      + +.+  .++|.|++|||..
T Consensus         9 ~~Iaivg~y~~~~~d-ny~S~~~aL~~~g~~~~~~v~v~~~~~~-~~~~~~~~~------~~~~~--~~~dgiil~GG~~   78 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGD-TYFSVLQCFEHCQIALQVRLDILYVDSE-ELEGPNADE------ARKAL--LGCDGIFVPGGFG   78 (273)
T ss_dssp             EEEEEEECCHHHHTT-TTHHHHHHHHHHHHHHTCCEEEEEEEGG-GGSSTTTHH------HHHHH--HTCSEEEECCCCT
T ss_pred             CEEEEEeCCCcCCch-HHHHHHHHHHHHHHhcCCceEEeccChh-hcccccchh------HHHHH--hhCCEEEecCCCC
Confidence            6889884221  111 34444444443    3567777766653 222111100      2 222  4689999999964


Q ss_pred             chHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          294 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       294 ~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      . .   .....+++++++.+.++||.+||-|..+|+.
T Consensus        79 ~-~---~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~  111 (273)
T 2w7t_A           79 N-R---GVDGKCAAAQVARMNNIPYFGVXLGMQVAVI  111 (273)
T ss_dssp             T-T---THHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred             C-c---CchhHHHHHHHHHHCCCcEEEECcCHHHHHH
Confidence            3 2   2235778899888899999999999999975

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=96.58  E-value=0.011  Score=54.52  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=66.7

Q ss_pred             CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCC--eEEEEeecCCceeecCCCcEEee-CCCccCcCCCCccEEEEcCCccc
Q 015523          219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIA-DKSISDAAESVYDLIILPGGVAG  294 (405)
Q Consensus       219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~--~v~~vs~~~~~~v~~~~g~~v~~-~~~l~~~~~~~~D~livpgG~~~  294 (405)
                      +++||+||-...- ...| ..+...|.....  +++++.+... ......--.+.. =.++++++...||++||.||..+
T Consensus        46 rplkI~ILnlmp~k~~te-~qf~rlL~~~~~qv~v~~~~~~~~-~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~  123 (312)
T 2h2w_A           46 RPLEILILNLMPDKIKTE-IQLLRLLGNTPLQVNVTLLYTETH-KPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVE  123 (312)
T ss_dssp             CCEEEEEECCCSSHHHHH-HHHHHHHHSSSSCEEEEEECCSCC-CCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCT
T ss_pred             CCceEEEEeCCCCcCchH-HHHHHHhcCCCCcEEEEEEEccCC-CCCCccHHHHhhccCCcccccccCcCEEEECCCCCC
Confidence            5689999976433 3333 446666666664  4444544432 100000000000 01456655578999999999632


Q ss_pred             hH---hhhcChHHHHHHHHHhhcCCEEEEEchHHHH-HHHcC
Q 015523          295 AE---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHG  332 (405)
Q Consensus       295 ~~---~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~-La~aG  332 (405)
                      ..   ...--.++.+++++...+++++.+||-|..+ +..+|
T Consensus       124 ~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~  165 (312)
T 2h2w_A          124 LLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFY  165 (312)
T ss_dssp             TSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             CCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhC
Confidence            21   1122257888888888999999999999998 54443

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=96.57  E-value=0.0021  Score=55.98  Aligned_cols=100  Identities=16%  Similarity=0.054  Sum_probs=64.3

Q ss_pred             CCCcEEEEEecCCC---chhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh
Q 015523           15 SFALNVLVPVGFGT---EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG   91 (405)
Q Consensus        15 ~~~~ki~ill~~g~---~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~   91 (405)
                      ...+||+|+-+-.-   ...-+....+.|++.|++++.+.....           .++...+.+  .+.|+|++|||...
T Consensus        25 ~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~-----------~~~~~~~~l--~~ad~I~l~GG~~~   91 (206)
T 3l4e_A           25 LQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE-----------SLGEITTKL--RKNDFIYVTGGNTF   91 (206)
T ss_dssp             CTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS-----------CHHHHHHHH--HHSSEEEECCSCHH
T ss_pred             cCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC-----------ChHHHHHHH--HhCCEEEECCCCHH
Confidence            34679999975422   123346678899999998877643221           010001122  25799999999311


Q ss_pred             -hhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           92 -SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        92 -~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                       .........+.+.|++++++|++++++|.| +.+++.
T Consensus        92 ~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAG-a~~l~~  128 (206)
T 3l4e_A           92 FLLQELKRTGADKLILEEIAAGKLYIGESAG-AVITSP  128 (206)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHTTCEEEEETHH-HHTTSS
T ss_pred             HHHHHHHHCChHHHHHHHHHcCCeEEEECHH-HHHhcc
Confidence             122234567888999999999999999995 545664

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=96.54  E-value=0.0056  Score=55.12  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=53.4

Q ss_pred             HHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCcc-chHh-------------hhcChHH
Q 015523          239 IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA-GAER-------------LQKSRIL  304 (405)
Q Consensus       239 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~-~~~~-------------~~~~~~l  304 (405)
                      .++.+.++|..+.++.....             . .+.+. ...+|.|++|||.. .+..             ...+...
T Consensus        33 ~~~~l~~aG~~pv~lp~~~~-------------~-~~~~~-l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~   97 (254)
T 3fij_A           33 YVDAIQKVGGFPIALPIDDP-------------S-TAVQA-ISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYE   97 (254)
T ss_dssp             HHHHHHHHTCEEEEECCCCG-------------G-GHHHH-HHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHH
T ss_pred             HHHHHHHCCCEEEEEeCCCc-------------h-HHHHH-HhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHH
Confidence            56677778888777755431             0 11111 14689999999942 0111             1123458


Q ss_pred             HHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          305 KKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       305 ~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +++|+++.++++||.+||-|..+|+.+
T Consensus        98 ~~lir~a~~~~~PiLGIC~G~Qll~~a  124 (254)
T 3fij_A           98 IALVRAALDAGKPIFAICRGMQLVNVA  124 (254)
T ss_dssp             HHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            899999999999999999999999876

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=96.54  E-value=0.0049  Score=58.63  Aligned_cols=88  Identities=18%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      .+||+++=+ |+.    ..+.+.|++.|+++.++..+..                .+++...++|.||++||...+   .
T Consensus       190 ~~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~~----------------~e~i~~~~~DGliLsGGPgdp---~  245 (379)
T 1a9x_B          190 PFHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQTS----------------AEDVLKMNPDGIFLSNGPGDP---A  245 (379)
T ss_dssp             CEEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTCC----------------HHHHHTTCCSEEEECCCSBCS---T
T ss_pred             CCEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccCC----------------HHHHhhcCCCEEEEeCCCCCh---H
Confidence            357888877 554    4478888999999888854321                111111258999999994222   2


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      +.....++++++.++++||.+||-|-. +|+.+
T Consensus       246 ~~~~~~~~Ir~~~~~~~PILGIClG~Q-LLa~A  277 (379)
T 1a9x_B          246 PCDYAITAIQKFLETDIPVFGICLGHQ-LLALA  277 (379)
T ss_dssp             TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECchHH-HHHHH
Confidence            346788999999999999999999766 57753

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=96.50  E-value=0.0043  Score=57.10  Aligned_cols=112  Identities=16%  Similarity=0.194  Sum_probs=64.3

Q ss_pred             CcCEEEEEeCCCC-cHHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEee-CCCccCcCCCCccEEEEcCCccc
Q 015523          219 RMPRVLIPIANGS-EEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIA-DKSISDAAESVYDLIILPGGVAG  294 (405)
Q Consensus       219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~~-~~~l~~~~~~~~D~livpgG~~~  294 (405)
                      +++||+||-...- ...| ..+...|....  ++++++.+... ......--.+.. =..+++++...||++||.||..+
T Consensus        34 rplkI~ILnlmp~k~~te-~qf~rlL~~~~~qv~v~~~~~~~~-~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~  111 (301)
T 2vdj_A           34 RALKIAILNLMPTKQETE-AQLLRLIGNTPLQLDVHLLHMESH-LSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVE  111 (301)
T ss_dssp             CCEEEEEECCCSSHHHHH-HHHHHHHTCSSSCEEEEEECCCC-------------CCEECHHHHTTSCEEEEEECCCTTT
T ss_pred             CCceEEEEeCCCCcCchH-HHHHHHhcCCCCcEEEEEEeccCC-CCCCccHHHHhhcccCcccccccccCEEEECCCCCc
Confidence            5689999976433 3333 44566665555  44554544433 111111111111 01344444578999999998632


Q ss_pred             hH---hhhcChHHHHHHHHHhhcCCEEEEEchHHHH-HHHcC
Q 015523          295 AE---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHG  332 (405)
Q Consensus       295 ~~---~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~-La~aG  332 (405)
                      ..   ...--.++.+++++...+++++.+||-|..+ +..+|
T Consensus       112 ~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~  153 (301)
T 2vdj_A          112 TLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHY  153 (301)
T ss_dssp             TSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             CCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhC
Confidence            21   1112257888888888999999999999998 44443

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.39  E-value=0.0034  Score=63.16  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=62.0

Q ss_pred             cCEEEEEeCC-CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh-
Q 015523          220 MPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-  297 (405)
Q Consensus       220 ~~~V~il~~~-g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~-  297 (405)
                      |++|+|+-+. ++.    ....+.|++.|+.+.++....              +   ..+  .++|.||+|||- .... 
T Consensus         4 m~~I~Iid~~~g~~----~~~~~~l~~~G~~~~vv~~~~--------------~---~~l--~~~DglILpGgG-~~~~~   59 (555)
T 1jvn_A            4 MPVVHVIDVESGNL----QSLTNAIEHLGYEVQLVKSPK--------------D---FNI--SGTSRLILPGVG-NYGHF   59 (555)
T ss_dssp             SCEEEEECCSCSCC----HHHHHHHHHTTCEEEEESSGG--------------G---CCS--TTCSCEEEEECS-CHHHH
T ss_pred             CCEEEEEECCCCCH----HHHHHHHHHCCCEEEEECCcc--------------c---ccc--ccCCEEEECCCC-chHhH
Confidence            5799999875 332    346788888999888764211              0   122  568999999952 2221 


Q ss_pred             --hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          298 --LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       298 --~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                        ...+..+.++|+++.++++||.+||.|..+|+.+
T Consensus        60 ~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a   95 (555)
T 1jvn_A           60 VDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG   95 (555)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEE
T ss_pred             hhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhh
Confidence              1122346788999989999999999999999985

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=96.29  E-value=0.0051  Score=53.76  Aligned_cols=90  Identities=18%  Similarity=0.132  Sum_probs=56.0

Q ss_pred             CCCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCC-chhhh
Q 015523           15 SFALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG-MPGSV   93 (405)
Q Consensus        15 ~~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg-~~~~~   93 (405)
                      ..++||.++=+.+-.   ...+.+.|++.|+++.++..+.                ..+++.  ++|.||+||| .....
T Consensus        11 ~~~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~----------------~~~~l~--~~DglIl~GG~p~~~~   69 (212)
T 2a9v_A           11 HHMLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI----------------DSSELD--GLDGLVLSGGAPNIDE   69 (212)
T ss_dssp             CCCCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS----------------CGGGGT--TCSEEEEEEECSCGGG
T ss_pred             cccceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC----------------CHHHHh--CCCEEEECCCCCCCCc
Confidence            356788887644333   3346788888888877765432                122333  4999999999 43332


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .....+.+.+++   .++++||.+||-|-. +|+.+
T Consensus        70 ~~~~~~~l~~~~---~~~~~PiLGIC~G~Q-ll~~~  101 (212)
T 2a9v_A           70 ELDKLGSVGKYI---DDHNYPILGICVGAQ-FIALH  101 (212)
T ss_dssp             TGGGHHHHHHHH---HHCCSCEEEETHHHH-HHHHH
T ss_pred             ccccchhHHHHH---HhCCCCEEEEChHHH-HHHHH
Confidence            211223344443   478999999999765 57764

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=96.26  E-value=0.015  Score=58.32  Aligned_cols=93  Identities=13%  Similarity=0.070  Sum_probs=59.8

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      ..+|+||=|-.-..   ..+...|++.|..++++..+.                .++++...++|.||+|||........
T Consensus         7 ~~~IlilD~Gs~~~---~~I~r~lre~Gv~~eiv~~~~----------------~~~~i~~~~~dgIIlsGGp~s~~~~~   67 (556)
T 3uow_A            7 YDKILVLNFGSQYF---HLIVKRLNNIKIFSETKDYGV----------------ELKDIKDMNIKGVILSGGPYSVTEAG   67 (556)
T ss_dssp             CCEEEEEESSCTTH---HHHHHHHHHTTCCEEEEETTC----------------CGGGTTTSCEEEEEECCCSCCTTSTT
T ss_pred             CCEEEEEECCCccH---HHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEECCCCCcccccC
Confidence            36777775543222   356778888998888875432                23344334789999999975432211


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .......+++.+.++++||.+||.|..+|+.+
T Consensus        68 ~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~   99 (556)
T 3uow_A           68 SPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQ   99 (556)
T ss_dssp             CCCCCHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             CcchhHHHHHHhhhcCCCEEEECHHHHHHHHH
Confidence            11112234444567799999999999999976

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=96.25  E-value=0.0013  Score=57.85  Aligned_cols=88  Identities=17%  Similarity=0.069  Sum_probs=51.9

Q ss_pred             CcEEEEEecC-CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGF-GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~-g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      .+||+||=+. ++.    ..+...|++.|+++.++..+..                .+++...+||.||+|||. .....
T Consensus        24 ~~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~----------------~~~l~~~~~dglil~Gg~-~~~~~   82 (218)
T 2vpi_A           24 EGAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP----------------AFAIKEQGFRAIIISGGP-NSVYA   82 (218)
T ss_dssp             TTCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC----------------HHHHHHHTCSEEEEEC--------
T ss_pred             CCeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC----------------hHHHhhcCCCEEEECCCC-ccccc
Confidence            4689999554 443    3567888888988888865432                011111358999999994 22111


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .+...   +.++..+.++||.+||.|.. +|+.+
T Consensus        83 ~~~~~---~~~~~~~~~~PilGIC~G~Q-ll~~~  112 (218)
T 2vpi_A           83 EDAPW---FDPAIFTIGKPVLGICYGMQ-MMNKV  112 (218)
T ss_dssp             --CCC---CCGGGGTSSCCEEEETHHHH-HHHHH
T ss_pred             ccchh---HHHHHHHcCCCEEEEcHHHH-HHHHH
Confidence            11111   22344568999999999766 57763

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=96.18  E-value=0.022  Score=52.58  Aligned_cols=113  Identities=17%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             CCCCcEEEEEecCC-CchhhHHHHHHHHHhcC--CEEEEEecCCCceeEe---ccCcEEecCcccCCCCCCcccEEEEcC
Q 015523           14 PSFALNVLVPVGFG-TEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEA---SSGTRLVADTSISNCSHQVFDLIALPG   87 (405)
Q Consensus        14 ~~~~~ki~ill~~g-~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~---~~g~~v~~~~~~~~~~~~~~d~liipg   87 (405)
                      ..+++||+||-.-. ....| .-+...|....  ++++++.+... ..+.   ++--.+.  .++.+.....||++||-|
T Consensus        44 dirplkI~ILnlmp~k~~te-~qf~rlL~~~~~qv~v~~~~~~~~-~~~~~~~~hl~~~y--~~f~~~~~~~~DglIITG  119 (312)
T 2h2w_A           44 DIRPLEILILNLMPDKIKTE-IQLLRLLGNTPLQVNVTLLYTETH-KPKHTPIEHILKFY--TTFSAVKDRKFDGFIITG  119 (312)
T ss_dssp             -CCCEEEEEECCCSSHHHHH-HHHHHHHHSSSSCEEEEEECCSCC-CCCSSCHHHHHHHC--BCGGGTTTCCEEEEEECC
T ss_pred             CCCCceEEEEeCCCCcCchH-HHHHHHhcCCCCcEEEEEEEccCC-CCCCccHHHHhhcc--CCcccccccCcCEEEECC
Confidence            46789999997532 22233 44455555554  55555555433 1110   0000111  134444445799999999


Q ss_pred             Cchhhhcc---ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523           88 GMPGSVRL---RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  130 (405)
Q Consensus        88 g~~~~~~~---~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag  130 (405)
                      +.......   .--.++.++++...++++++.+||-|..+++..+|
T Consensus       120 sP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~  165 (312)
T 2h2w_A          120 APVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFY  165 (312)
T ss_dssp             CSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             CCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhC
Confidence            94211111   11256778888888899999999998664344433

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=96.11  E-value=0.005  Score=56.55  Aligned_cols=102  Identities=9%  Similarity=0.053  Sum_probs=62.0

Q ss_pred             cCEEEEE-eCCCCcHHHHHHHHHHHHhCCC----eEEEEeecCCceeecCCCcEEeeCCC-ccCc--CCCCccEEEEcCC
Q 015523          220 MPRVLIP-IANGSEEIEIVTIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADKS-ISDA--AESVYDLIILPGG  291 (405)
Q Consensus       220 ~~~V~il-~~~g~~~~e~~~~~~~l~~~~~----~v~~vs~~~~~~v~~~~g~~v~~~~~-l~~~--~~~~~D~livpgG  291 (405)
                      .++|+|+ -|.+.... +..+.+.|+++|+    ++.++..+.. .+...   .+..+.. ++++  ...++|.||+|||
T Consensus        25 ~~~Iavv~d~~~~~~s-~~si~~~L~~~G~~~~~~v~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~dgiil~GG   99 (289)
T 2v4u_A           25 ICSIALVGKYTKLRDC-YASVFKALEHSALAINHKLNLMYIDSI-DLEKI---TETEDPVKFHEAWQKLCKADGILVPGG   99 (289)
T ss_dssp             EEEEEEEESCSSCCGG-GHHHHHHHHHHHHHTTEEEEEEEEEGG-GGSHH---HHHHCHHHHHHHHHHHHHCSEEEECSC
T ss_pred             ceEEEEEecCcCCCcc-HHHHHHHHHHhhhhhCCceEEEEechh-hcccc---cccCChhhhhhHHHHHhhCCEEEecCC
Confidence            3688887 55344321 3356777776653    5566655542 11110   0000100 0110  0146899999999


Q ss_pred             ccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          292 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       292 ~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      ... ..   ...+.++++++.+.++||.+||.|..+|+.
T Consensus       100 ~~~-~~---~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~  134 (289)
T 2v4u_A          100 FGI-RG---TLGKLQAISWARTKKIPFLGVXLGMQLAVI  134 (289)
T ss_dssp             CSS-TT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred             CCc-hh---HHHHHHHHHHHHHcCCcEEEECccHHHHHH
Confidence            743 22   256889999999999999999999999986

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=96.08  E-value=0.0053  Score=54.35  Aligned_cols=96  Identities=18%  Similarity=0.056  Sum_probs=60.3

Q ss_pred             CcEEEEEecCC---CchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh-h
Q 015523           17 ALNVLVPVGFG---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-S   92 (405)
Q Consensus        17 ~~ki~ill~~g---~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~-~   92 (405)
                      ..||+|+-+-.   -...-+....+.|++.|+++..+....              + ..+.+.  +.|+|++|||... .
T Consensus        31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~--------------d-~~~~l~--~ad~I~lpGG~~~~~   93 (229)
T 1fy2_A           31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVA--------------D-PLAAIE--KAEIIIVGGGNTFQL   93 (229)
T ss_dssp             CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSS--------------C-HHHHHH--HCSEEEECCSCHHHH
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccc--------------c-HHHHHh--cCCEEEECCCcHHHH
Confidence            46888887652   122334556777888887665542110              0 112232  5899999999411 1


Q ss_pred             hccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523           93 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  130 (405)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag  130 (405)
                      ........+.+.|+++++++++++++|.| +.+|++..
T Consensus        94 ~~~l~~~gl~~~l~~~~~~G~p~~G~sAG-~~~l~~~~  130 (229)
T 1fy2_A           94 LKESRERGLLAPMADRVKRGALYIGWSAG-ANLACPTI  130 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCEEEEETHH-HHHTSSBS
T ss_pred             HHHHHHCChHHHHHHHHHcCCEEEEECHH-HHhhcccc
Confidence            22223456788899999999999999995 54677643

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=96.05  E-value=0.016  Score=53.18  Aligned_cols=115  Identities=15%  Similarity=0.148  Sum_probs=62.1

Q ss_pred             CCCCcEEEEEecCC-CchhhHHHHHHHHHhcC--CEEEEEecCCCceeEeccCcEEecC-cccCCCCCCcccEEEEcCCc
Q 015523           14 PSFALNVLVPVGFG-TEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLVAD-TSISNCSHQVFDLIALPGGM   89 (405)
Q Consensus        14 ~~~~~ki~ill~~g-~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~~~-~~~~~~~~~~~d~liipgg~   89 (405)
                      ..+++||+||-.-. ....| .-+...|....  ++++++.+... .-+...--.+..- .++.+.....||++||-|+.
T Consensus        32 ~irplkI~ILnlmp~k~~te-~qf~rlL~~~~~qv~v~~~~~~~~-~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap  109 (301)
T 2vdj_A           32 DIRALKIAILNLMPTKQETE-AQLLRLIGNTPLQLDVHLLHMESH-LSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAP  109 (301)
T ss_dssp             TSCCEEEEEECCCSSHHHHH-HHHHHHHTCSSSCEEEEEECCCC-------------CCEECHHHHTTSCEEEEEECCCT
T ss_pred             CCCCceEEEEeCCCCcCchH-HHHHHHhcCCCCcEEEEEEeccCC-CCCCccHHHHhhcccCcccccccccCEEEECCCC
Confidence            46789999997532 22222 34445555444  55655655443 1111111111111 02333333579999999994


Q ss_pred             hhhhcc---ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC
Q 015523           90 PGSVRL---RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG  130 (405)
Q Consensus        90 ~~~~~~---~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag  130 (405)
                      ......   .--.++.++++...++++++.+||-|..+++..+|
T Consensus       110 ~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~  153 (301)
T 2vdj_A          110 VETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHY  153 (301)
T ss_dssp             TTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred             CcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhC
Confidence            211111   11256778888888999999999998664344433

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=95.94  E-value=0.0058  Score=61.44  Aligned_cols=90  Identities=14%  Similarity=0.002  Sum_probs=59.4

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCC-chhhh-c
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG-MPGSV-R   94 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg-~~~~~-~   94 (405)
                      |++|+|+-+..   ..+..+.+.|++.|+++.++....                . ..+  ..+|.||+||| ..... .
T Consensus         4 m~~I~Iid~~~---g~~~~~~~~l~~~G~~~~vv~~~~----------------~-~~l--~~~DglILpGgG~~~~~~~   61 (555)
T 1jvn_A            4 MPVVHVIDVES---GNLQSLTNAIEHLGYEVQLVKSPK----------------D-FNI--SGTSRLILPGVGNYGHFVD   61 (555)
T ss_dssp             SCEEEEECCSC---SCCHHHHHHHHHTTCEEEEESSGG----------------G-CCS--TTCSCEEEEECSCHHHHHH
T ss_pred             CCEEEEEECCC---CCHHHHHHHHHHCCCEEEEECCcc----------------c-ccc--ccCCEEEECCCCchHhHhh
Confidence            46899997641   122456788888998888765211                0 112  26899999994 32111 1


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ...+..+.++|+++.++++||.+||.|-. +|+.+
T Consensus        62 ~l~~~~~~~~i~~~~~~g~PiLGIC~G~Q-lL~~a   95 (555)
T 1jvn_A           62 NLFNRGFEKPIREYIESGKPIMGIXVGLQ-ALFAG   95 (555)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEEEHHHH-TTEEE
T ss_pred             hhhhccHHHHHHHHHHcCCcEEEEchhhh-hhhhh
Confidence            11123457889999999999999999755 68874

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=95.94  E-value=0.033  Score=54.70  Aligned_cols=155  Identities=11%  Similarity=0.041  Sum_probs=88.9

Q ss_pred             EEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhcccccccCccccccccccccc-----cCCcCEEEEEe-CCC
Q 015523          157 IHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWF-----FDRMPRVLIPI-ANG  230 (405)
Q Consensus       157 ~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~V~il~-~~g  230 (405)
                      .|...+++.+.+..+..+.=+.+    ..+...+.+.+.|.++..+.  .+..|..+..+     .....+|+++- |-+
T Consensus       231 ~V~~~~VI~i~DvdtiY~vpl~L----~~qGl~~~~~~~l~l~~~~~--~~~~w~~~~~~~~~~~~~~~v~IalVGKY~~  304 (535)
T 3nva_A          231 NVKVDHIVSSYDVETSYEVPIIL----ESQKLVSKILSRLKLEDRQV--DLTDWISFVNNIKGINSKKTINIALVGKYTK  304 (535)
T ss_dssp             TCCGGGEEEEECCSCGGGHHHHH----HHHTHHHHHHHHTTCCCCCC--CCHHHHHHHHHHHTTTCCCEEEEEEEESCTT
T ss_pred             CCChhceEecCCCChHHHhHHHH----HHCCcHHHHHHHcCCCCCCC--CHHHHHHHHHHhhccCCCCeeEEEEEecCcC
Confidence            34456677777766654332322    23455666777887764322  23333332211     12345677664 333


Q ss_pred             CcHHHHHHHHHHHHhC----CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHH
Q 015523          231 SEEIEIVTIVDILRRA----KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKK  306 (405)
Q Consensus       231 ~~~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~  306 (405)
                      ..+. ...+.+.|..+    +.++++...+.. .+... +.     ...+++  .++|.|++|||.+..    .....++
T Consensus       305 l~Da-Y~Sv~eAL~hag~~~~~~V~I~wIds~-~l~~~-~~-----~~~~~L--~~~DgIIlpGG~G~~----~~~g~i~  370 (535)
T 3nva_A          305 LKDS-YISIKEAIYHASAYIGVRPKLIWIEST-DLESD-TK-----NLNEIL--GNVNGIIVLPGFGSR----GAEGKIK  370 (535)
T ss_dssp             SGGG-GHHHHHHHHHHHHHTTCEEEEEEEEGG-GGCCS-SS-----CCTTTT--TSCSEEEECCCCSST----THHHHHH
T ss_pred             Cchh-HHHHHHHHHHHHHHcCCCeEEEEecch-hcccc-cc-----chhhhc--cCCCEEEECCCCCCc----cHHHHHH
Confidence            3322 23445555544    466776655543 22111 10     012333  789999999997432    2356788


Q ss_pred             HHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          307 LLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       307 ~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +++.+..+++|+.+||-|..+|+.+
T Consensus       371 ~ir~a~~~~~PiLGIClG~Qll~va  395 (535)
T 3nva_A          371 AIKYAREHNIPFLGICFGFQLSIVE  395 (535)
T ss_dssp             HHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEECcchhHHHHH
Confidence            9999999999999999999988643

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=95.57  E-value=0.032  Score=50.10  Aligned_cols=78  Identities=13%  Similarity=0.126  Sum_probs=51.0

Q ss_pred             HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchh--hhcc-------------ccCh
Q 015523           35 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRL-------------RDCE   99 (405)
Q Consensus        35 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~--~~~~-------------~~~~   99 (405)
                      ..++.+.++|..+.++.+...              ..+.+. ...+|.|++|||. +  +..+             ..+.
T Consensus        32 ~~~~~l~~aG~~pv~lp~~~~--------------~~~~~~-l~~~DGlil~GG~-~v~P~~yg~~~~~~~~~~~~~rd~   95 (254)
T 3fij_A           32 RYVDAIQKVGGFPIALPIDDP--------------STAVQA-ISLVDGLLLTGGQ-DITPQLYLEEPSQEIGAYFPPRDS   95 (254)
T ss_dssp             HHHHHHHHHTCEEEEECCCCG--------------GGHHHH-HHTCSEEEECCCS-CCCGGGGTCCCCTTCCCCCHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeCCCc--------------hHHHHH-HhhCCEEEECCCC-CCChhhcCCccCcccCCcChhhhH
Confidence            356777788888887765432              001111 1258999999993 2  1111             1123


Q ss_pred             HHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          100 ILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       100 ~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ..+++++++.++++||.+||-|-. +|+.+
T Consensus        96 ~~~~lir~a~~~~~PiLGIC~G~Q-ll~~a  124 (254)
T 3fij_A           96 YEIALVRAALDAGKPIFAICRGMQ-LVNVA  124 (254)
T ss_dssp             HHHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            367899999999999999999755 67765

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=95.57  E-value=0.029  Score=56.31  Aligned_cols=93  Identities=15%  Similarity=0.011  Sum_probs=56.4

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      ...||+||=|-.   .-...+...+++.|..++++..+..                ++++...++|.||+|||...... 
T Consensus         6 ~~~~IlilD~Gs---~~~~~I~r~lre~Gv~~eiv~~~~~----------------~~~i~~~~~dgIIlsGGp~s~~~-   65 (556)
T 3uow_A            6 EYDKILVLNFGS---QYFHLIVKRLNNIKIFSETKDYGVE----------------LKDIKDMNIKGVILSGGPYSVTE-   65 (556)
T ss_dssp             -CCEEEEEESSC---TTHHHHHHHHHHTTCCEEEEETTCC----------------GGGTTTSCEEEEEECCCSCCTTS-
T ss_pred             CCCEEEEEECCC---ccHHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCcccc-
Confidence            345787775432   2234567888899999888865421                12232236899999999422211 


Q ss_pred             ccChHHH-HHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 RDCEILK-KITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 ~~~~~~~-~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ...+.+. ..++.+.++++||.+||.|-. +|+.+
T Consensus        66 ~~~~~~~~~l~~~a~~~g~PvLGIC~G~Q-lLa~~   99 (556)
T 3uow_A           66 AGSPHLKKEVFEYFLEKKIPIFGICYGMQ-EIAVQ   99 (556)
T ss_dssp             TTCCCCCHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             cCCcchhHHHHHHhhhcCCCEEEECHHHH-HHHHH
Confidence            1112222 334445677999999999765 57754

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=95.30  E-value=0.047  Score=55.70  Aligned_cols=89  Identities=22%  Similarity=0.251  Sum_probs=61.1

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh-
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ-  299 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~-  299 (405)
                      ++|.|+=+-.. .  ...+...|.+.|+.++++..+.  +               .+.  .++|.||++||.+...... 
T Consensus       447 k~IlviD~gds-f--~~~l~~~l~~~G~~v~Vv~~d~--~---------------~~~--~~~DgIIlsGGPg~p~d~~~  504 (645)
T 3r75_A          447 CRALIVDAEDH-F--TAMIAQQLSSLGLATEVCGVHD--A---------------VDL--ARYDVVVMGPGPGDPSDAGD  504 (645)
T ss_dssp             CEEEEEESSCT-H--HHHHHHHHHHTTCEEEEEETTC--C---------------CCG--GGCSEEEECCCSSCTTCTTS
T ss_pred             CEEEEEECCcc-H--HHHHHHHHHHCCCEEEEEECCC--c---------------ccc--cCCCEEEECCCCCChhhhhh
Confidence            56666632221 1  2357788888999988875543  1               112  4689999999875433211 


Q ss_pred             -cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 -KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 -~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       ....+.++|+++...++||.+||-|..+|+.+
T Consensus       505 p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~a  537 (645)
T 3r75_A          505 PRIARLYAWLRHLIDEGKPFMAVCLSHQILNAI  537 (645)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence             11246788898889999999999999999875

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=95.15  E-value=0.034  Score=55.48  Aligned_cols=88  Identities=15%  Similarity=0.019  Sum_probs=55.9

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      .+|+|+=|-.-..   ..+...+++.|..++++..+.                ..+++....+|.||+|||.....    
T Consensus        11 ~~I~IlD~g~~~~---~~i~r~lr~~Gv~~~i~p~~~----------------~~~~i~~~~~dgIILsGGp~sv~----   67 (527)
T 3tqi_A           11 HRILILDFGSQYA---QLIARRVREIGVYCELMPCDI----------------DEETIRDFNPHGIILSGGPETVT----   67 (527)
T ss_dssp             SEEEEEECSCTTH---HHHHHHHHHHTCEEEEEETTC----------------CSSSSTTTCCSEEEECCCCC-------
T ss_pred             CeEEEEECCCccH---HHHHHHHHHCCCeEEEEECCC----------------CHHHHHhcCCCEEEECCcCcccc----
Confidence            5788886543222   356778888898888774332                22333223579999999964322    


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      +.......+..++.++||.+||.|..+|+.+
T Consensus        68 ~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~   98 (527)
T 3tqi_A           68 LSHTLRAPAFIFEIGCPVLGICYGMQTMAYQ   98 (527)
T ss_dssp             ------CCCSTTTSSSCEEEETHHHHHHHHH
T ss_pred             cCCChhhHHHHHhcCCCEEEEChHHHHHHHH
Confidence            1222333455678899999999999999875

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=95.00  E-value=0.02  Score=52.00  Aligned_cols=96  Identities=10%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             cEEEEEecCC--CchhhHHHHHHHHHh----cCCEEEEEecCCCceeEeccCcEEecCccc-CCCCCCcccEEEEcCCch
Q 015523           18 LNVLVPVGFG--TEEMEAVIIVDVLRR----AGAQVTMASVEPQLEVEASSGTRLVADTSI-SNCSHQVFDLIALPGGMP   90 (405)
Q Consensus        18 ~ki~ill~~g--~~~~e~~~~~~~l~~----~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~-~~~~~~~~d~liipgg~~   90 (405)
                      .||+|+.-.+  +.+ .+..+...|..    .+.++.++..+.. .+....+..      + ..+  ..+|.||+|||. 
T Consensus         9 ~~Iaivg~y~~~~~d-ny~S~~~aL~~~g~~~~~~v~v~~~~~~-~~~~~~~~~------~~~~~--~~~dgiil~GG~-   77 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGD-TYFSVLQCFEHCQIALQVRLDILYVDSE-ELEGPNADE------ARKAL--LGCDGIFVPGGF-   77 (273)
T ss_dssp             EEEEEEECCHHHHTT-TTHHHHHHHHHHHHHHTCCEEEEEEEGG-GGSSTTTHH------HHHHH--HTCSEEEECCCC-
T ss_pred             CEEEEEeCCCcCCch-HHHHHHHHHHHHHHhcCCceEEeccChh-hcccccchh------HHHHH--hhCCEEEecCCC-
Confidence            6899984221  122 44555555543    3566777765543 222111100      1 112  258999999994 


Q ss_pred             hhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           91 GSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      +..   ..+...++++++.+.++||.+||-|-. +|+.
T Consensus        78 ~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~  111 (273)
T 2w7t_A           78 GNR---GVDGKCAAAQVARMNNIPYFGVXLGMQ-VAVI  111 (273)
T ss_dssp             TTT---THHHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred             CCc---CchhHHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence            332   223577889988889999999999766 5653

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=94.83  E-value=0.097  Score=53.37  Aligned_cols=89  Identities=13%  Similarity=0.143  Sum_probs=58.9

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      .+++|.|+=+.+   +=...+...|++.|++++++..+..                 .+.  .++|.|||+||...... 
T Consensus       445 ~Gk~IlviD~gd---sf~~~l~~~l~~~G~~v~Vv~~d~~-----------------~~~--~~~DgIIlsGGPg~p~d-  501 (645)
T 3r75_A          445 SGCRALIVDAED---HFTAMIAQQLSSLGLATEVCGVHDA-----------------VDL--ARYDVVVMGPGPGDPSD-  501 (645)
T ss_dssp             TTCEEEEEESSC---THHHHHHHHHHHTTCEEEEEETTCC-----------------CCG--GGCSEEEECCCSSCTTC-
T ss_pred             CCCEEEEEECCc---cHHHHHHHHHHHCCCEEEEEECCCc-----------------ccc--cCCCEEEECCCCCChhh-
Confidence            356776663222   2234577888889999988865541                 011  36899999998422221 


Q ss_pred             ccC---hHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           96 RDC---EILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        96 ~~~---~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ...   ..+.++|+++.+.++||.+||-|-. +|+.
T Consensus       502 ~~~p~i~~~~~lI~~a~~~~iPiLGIClG~Q-lLa~  536 (645)
T 3r75_A          502 AGDPRIARLYAWLRHLIDEGKPFMAVCLSHQ-ILNA  536 (645)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred             hhhhhHHHHHHHHHHHHHCCCCEEEECHHHH-HHHH
Confidence            111   2367788888999999999999766 5664

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=94.78  E-value=0.02  Score=52.44  Aligned_cols=102  Identities=11%  Similarity=0.045  Sum_probs=59.8

Q ss_pred             CCcEEEEE-ecCCCchhh-HHHHHHHHHhcCC----EEEEEecCCCceeEeccCcEEecCcc-cCCC--CCCcccEEEEc
Q 015523           16 FALNVLVP-VGFGTEEME-AVIIVDVLRRAGA----QVTMASVEPQLEVEASSGTRLVADTS-ISNC--SHQVFDLIALP   86 (405)
Q Consensus        16 ~~~ki~il-l~~g~~~~e-~~~~~~~l~~~~~----~v~~vs~~~~~~v~~~~g~~v~~~~~-~~~~--~~~~~d~liip   86 (405)
                      ..+||+|+ =|.+  ..+ +..+.+.|+.+|+    ++.++..+.. .+...   .+..+.. ++++  ...++|.||+|
T Consensus        24 ~~~~Iavv~d~~~--~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~dgiil~   97 (289)
T 2v4u_A           24 KICSIALVGKYTK--LRDCYASVFKALEHSALAINHKLNLMYIDSI-DLEKI---TETEDPVKFHEAWQKLCKADGILVP   97 (289)
T ss_dssp             EEEEEEEEESCSS--CCGGGHHHHHHHHHHHHHTTEEEEEEEEEGG-GGSHH---HHHHCHHHHHHHHHHHHHCSEEEEC
T ss_pred             CceEEEEEecCcC--CCccHHHHHHHHHHhhhhhCCceEEEEechh-hcccc---cccCChhhhhhHHHHHhhCCEEEec
Confidence            34688887 4423  333 4577788876643    4555554432 11110   1111111 0010  01258999999


Q ss_pred             CCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           87 GGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        87 gg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ||. +...   .....++++++.+.++||.+||.|.. +|+.
T Consensus        98 GG~-~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Q-~l~~  134 (289)
T 2v4u_A           98 GGF-GIRG---TLGKLQAISWARTKKIPFLGVXLGMQ-LAVI  134 (289)
T ss_dssp             SCC-SSTT---HHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             CCC-Cchh---HHHHHHHHHHHHHcCCcEEEECccHH-HHHH
Confidence            994 3322   25688999999999999999999766 5665

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=94.55  E-value=0.03  Score=51.97  Aligned_cols=96  Identities=17%  Similarity=0.128  Sum_probs=56.9

Q ss_pred             cEEEEEecCCCch--------hhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCc
Q 015523           18 LNVLVPVGFGTEE--------MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM   89 (405)
Q Consensus        18 ~ki~ill~~g~~~--------~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~   89 (405)
                      ..|||+...+...        .-.....+.|+++|.++.++..+.. +            ..+.+. ...+|.||+|||.
T Consensus        31 P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~-~------------~~i~~~-l~~~dglil~GG~   96 (315)
T 1l9x_A           31 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT-E------------KDYEIL-FKSINGILFPGGS   96 (315)
T ss_dssp             CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC-H------------HHHHHH-HHHSSEEEECCCC
T ss_pred             CEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCC-H------------HHHHHH-HhcCCEEEEeCCC
Confidence            5899987643211        0112457888888998888765432 0            011111 1258999999994


Q ss_pred             hhhhcc--c-cChHHHHHHHHHHHcC--CEEEEEccchHHhhhh
Q 015523           90 PGSVRL--R-DCEILKKITSKQAEEK--RLYGAICAAPAVTLLP  128 (405)
Q Consensus        90 ~~~~~~--~-~~~~~~~~l~~~~~~~--~~i~aic~g~~~~La~  128 (405)
                      ......  . ....+.++++++.+++  +||.+||-|-. +|+.
T Consensus        97 ~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Q-ll~~  139 (315)
T 1l9x_A           97 VDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFE-ELSL  139 (315)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHH-HHHH
T ss_pred             cccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHH-HHHH
Confidence            222111  0 1135667777776664  99999999766 5664

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=94.01  E-value=0.05  Score=54.26  Aligned_cols=88  Identities=16%  Similarity=0.035  Sum_probs=53.4

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      ..||+||=|-+-   -...+...+++.|..++++..+..                .+++....+|.||+|||. ...   
T Consensus        10 ~~~I~IlD~g~~---~~~~i~r~lr~~Gv~~~i~p~~~~----------------~~~i~~~~~dgIILsGGp-~sv---   66 (527)
T 3tqi_A           10 QHRILILDFGSQ---YAQLIARRVREIGVYCELMPCDID----------------EETIRDFNPHGIILSGGP-ETV---   66 (527)
T ss_dssp             CSEEEEEECSCT---THHHHHHHHHHHTCEEEEEETTCC----------------SSSSTTTCCSEEEECCCC-C-----
T ss_pred             CCeEEEEECCCc---cHHHHHHHHHHCCCeEEEEECCCC----------------HHHHHhcCCCEEEECCcC-ccc---
Confidence            358888855322   224567888999999988854321                122222257999999994 221   


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .++......++.++.++||.+||.|-. +|+.
T Consensus        67 ~~~~~~~~~~~~~~~~~PvLGIC~G~Q-lla~   97 (527)
T 3tqi_A           67 TLSHTLRAPAFIFEIGCPVLGICYGMQ-TMAY   97 (527)
T ss_dssp             -------CCCSTTTSSSCEEEETHHHH-HHHH
T ss_pred             ccCCChhhHHHHHhcCCCEEEEChHHH-HHHH
Confidence            112223334556778999999999765 5665

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=93.73  E-value=0.18  Score=42.95  Aligned_cols=90  Identities=14%  Similarity=0.132  Sum_probs=51.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCc-cCcCCCCccEEEEcCCccchHhhhc
Q 015523          222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSI-SDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       222 ~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l-~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      +|+|+=.-+..   .......|++.|+++.++..+..  .          + .+ +.+...+.|.+++.||.+....   
T Consensus         2 ~i~iiDn~~s~---~~~i~~~l~~~G~~~~v~~~~~~--~----------~-~i~~~l~~~~~~~iil~gGpg~~~~---   62 (192)
T 1i1q_B            2 DILLLDNIDSF---TWNLADQLRTNGHNVVIYRNHIP--A----------Q-TLIDRLATMKNPVLMLSPGPGVPSE---   62 (192)
T ss_dssp             EEEEEECSCSS---HHHHHHHHHHTTCEEEEEETTSC--S----------H-HHHHHHTTCSSEEEEECCCSSCGGG---
T ss_pred             cEEEEECCccH---HHHHHHHHHHCCCeEEEEECCCC--H----------H-HHHHHhhhccCCeEEECCCCcCchh---
Confidence            56666532222   23457788888998887754421  0          0 11 1111113444666666544322   


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .....++++ ...+++||.+||-|..+|+.+
T Consensus        63 ~~~~~~l~~-~~~~~~PilGIC~G~Qll~~~   92 (192)
T 1i1q_B           63 AGCMPELLT-RLRGKLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             STTHHHHHH-HHBTTBCEEEETHHHHHHHHH
T ss_pred             CchHHHHHH-HHhcCCCEEEECcChHHHHHH
Confidence            223344444 456899999999999999875

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=93.65  E-value=0.061  Score=49.90  Aligned_cols=98  Identities=17%  Similarity=0.147  Sum_probs=60.3

Q ss_pred             cCEEEEEeCCCCcH--HH------HHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCC
Q 015523          220 MPRVLIPIANGSEE--IE------IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG  291 (405)
Q Consensus       220 ~~~V~il~~~g~~~--~e------~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG  291 (405)
                      ++.|+|....+...  .+      .....+.|.++|..+.++..+..            ++ .+.+. ..++|.||+|||
T Consensus        30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~------------~~-~i~~~-l~~~dglil~GG   95 (315)
T 1l9x_A           30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT------------EK-DYEIL-FKSINGILFPGG   95 (315)
T ss_dssp             CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC------------HH-HHHHH-HHHSSEEEECCC
T ss_pred             CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCC------------HH-HHHHH-HhcCCEEEEeCC
Confidence            46899987643221  00      12357888888988887754431            00 11110 136899999999


Q ss_pred             ccchHhh---hcChHHHHHHHHHhhcC--CEEEEEchHHHHHHHc
Q 015523          292 VAGAERL---QKSRILKKLLKEQKVAG--RIYGAVCSSPIVLHKH  331 (405)
Q Consensus       292 ~~~~~~~---~~~~~l~~~l~~~~~~~--k~i~aic~g~~~La~a  331 (405)
                      ..+....   .....++++++++..+|  +||.+||-|..+|+.+
T Consensus        96 ~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a  140 (315)
T 1l9x_A           96 SVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  140 (315)
T ss_dssp             CCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             CcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH
Confidence            6332111   01135677777776654  9999999999999754

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=93.64  E-value=0.06  Score=53.66  Aligned_cols=88  Identities=17%  Similarity=0.052  Sum_probs=56.8

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      ++|+|+=|.+-..   ..+...|++.|..++++..+.                ..+++....+|.||+|||....... .
T Consensus         8 ~~IlIlD~g~~~~---~~i~r~lr~~G~~~~i~p~~~----------------~~~~i~~~~~dgiILsGGp~s~~~~-~   67 (525)
T 1gpm_A            8 HRILILDFGSQYT---QLVARRVRELGVYCELWAWDV----------------TEAQIRDFNPSGIILSGGPESTTEE-N   67 (525)
T ss_dssp             SEEEEEECSCTTH---HHHHHHHHHTTCEEEEEESCC----------------CHHHHHHHCCSEEEECCCSSCTTST-T
T ss_pred             CEEEEEECCCccH---HHHHHHHHHCCCEEEEEECCC----------------CHHHHhccCCCEEEECCcCcccccc-C
Confidence            6788886654332   446788899999888775432                1222211246999999997433221 1


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+.+   .+.....++||.+||-|..+|+.+
T Consensus        68 ~~~~---~~~~~~~g~PvLGIC~G~Qlla~~   95 (525)
T 1gpm_A           68 SPRA---PQYVFEAGVPVFGVCYGMQTMAMQ   95 (525)
T ss_dssp             CCCC---CGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             Ccch---HHHHHHCCCCEEEEChHHHHHHHH
Confidence            1111   234567899999999999999874

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=93.12  E-value=0.13  Score=51.14  Aligned_cols=226  Identities=12%  Similarity=0.010  Sum_probs=115.0

Q ss_pred             cccEEEEcCCchhhhccccChHHHHHHHHHHHc-CC-EEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Cc----
Q 015523           79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEE-KR-LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW----  151 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~-~~-~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~----  151 (405)
                      +||++|+=|| .... -..+-.+.+.++++..+ |+ -++.+-..-.-+|..+|-++-+. |=|-  ...|+. ..    
T Consensus       133 ~~d~~i~e~~-gt~~-di~~~~~~~~~~q~~~~~~~~~~~~~h~~~~p~~~~~ge~ktkp-tq~s--v~~l~s~gi~pd~  207 (545)
T 1s1m_A          133 GHDVVLVEIG-GTVG-DIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKP-TQHS--VKELLSIGIQPDI  207 (545)
T ss_dssp             TCSEEEEEEC-SCTT-SSTTHHHHHHHHHHHHHHCTTSEEEEEEEECCEETTTTEECCHH-HHHH--HHHHHTTTCCCSE
T ss_pred             cCCEEEEECC-CChh-hhhChHHHHHHHHHhHhhCcCcEEEEEEeCcccccCCCCcCCCC-CcCC--HHHHhCCCCccCE
Confidence            6899999876 2333 23566777777776532 21 22222221333567777665432 3331  122222 00    


Q ss_pred             ------------ccc----CcEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhccccc-ccCccccccccccc
Q 015523          152 ------------AVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNSLKKEEFNEVE  214 (405)
Q Consensus       152 ------------~~~----~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~-~~~~~~~~~~~~~~  214 (405)
                                  +..    .-++...+++...+..+-.++-+.+=+  .|.  .+.+.+.+..+. .++...++.+-...
T Consensus       208 lv~R~~~~~~~~~r~kisL~~~v~~~~Vi~~~dvdt~y~lp~~lr~--~G~--~~~ii~~~~l~~~~~~l~~w~~lv~~v  283 (545)
T 1s1m_A          208 LICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKS--QGL--DDYICKRFSLNCPEANLSEWEQVIFEE  283 (545)
T ss_dssp             EEEEESSCCCHHHHHHHHHTTCCCSSCEEEEECCSCGGGHHHHHHH--TTH--HHHHHHHTTCCCCCCCCHHHHHHHHHH
T ss_pred             EEEeCCCCCCchhhccCChhhCccccCceecCCCChHHHHHHHHHH--cCC--hhhhhhhCCCCchhHHHHHHHHHHHhc
Confidence                        000    125666788988888776656555543  233  333444554431 11111111111000


Q ss_pred             cccCCcCEEEEEe-CCCCcHHHHHHHHHHHHhCCC----eEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEc
Q 015523          215 WFFDRMPRVLIPI-ANGSEEIEIVTIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILP  289 (405)
Q Consensus       215 ~~~~~~~~V~il~-~~g~~~~e~~~~~~~l~~~~~----~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livp  289 (405)
                      .......+|++.- +-...+ -...+...|..+++    ++.+...+.. .+..        +  +++ ...++|.|++|
T Consensus       284 ~~~~~~v~i~~vGkyv~l~D-~y~Si~~aL~~~G~~~~~~V~i~~~d~e-~i~~--------~--~~~-~l~~~DGIils  350 (545)
T 1s1m_A          284 ANPVSEVTIGMVGKYIELPD-AYKSVIEALKHGGLKNRVSVNIKLIDSQ-DVET--------R--GVE-ILKGLDAILVP  350 (545)
T ss_dssp             HCCSEEEEEEEEESSCSSGG-GGHHHHHHHHHHHHHHTEEEEEEEEEHH-HHHH--------H--CTT-TTTTCSEEEEC
T ss_pred             cCCCCeEEeCCcCCeEEEEE-HHHHHHHHHHHhCcccCCeEEEccCCHH-Hhhh--------h--hhh-hhhcCCEEEEC
Confidence            0011123555431 111111 22345556666653    4454443321 1110        0  111 12578999999


Q ss_pred             CCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          290 GGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       290 gG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      ||.+...    ....+++++++...++|+.+||-|..+|+.
T Consensus       351 GGpg~~~----~~g~~~~i~~a~~~~~PiLGIClG~Qll~v  387 (545)
T 1s1m_A          351 GGFGYRG----VEGMITTARFARENNIPYLGICLGMQVALI  387 (545)
T ss_dssp             CCCSSTT----HHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred             CCCCCcc----chhhHHHHHHHHHCCCcEEEECChHHHHHH
Confidence            9975422    245778899888899999999999999984

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=92.95  E-value=0.31  Score=44.42  Aligned_cols=97  Identities=14%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             CEEEEEeCCCCcHHH-HHHHHHHHHhCCC-eEEEEeecCCceeecCCCcEEeeCC-CccCcCCCCccEEEEcCCccchHh
Q 015523          221 PRVLIPIANGSEEIE-IVTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADK-SISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       221 ~~V~il~~~g~~~~e-~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~-~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      .||+++-+-.-.+.+ .....+.|.+.|+ +++++..... . .       ..+. ..+.+  .+.|+|+++||.  ...
T Consensus        57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r-~-~-------a~~~~~~~~l--~~ad~I~v~GGn--t~~  123 (291)
T 3en0_A           57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDR-A-Q-------GDDSGYRLFV--EQCTGIFMTGGD--QLR  123 (291)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSG-G-G-------GGCHHHHHHH--HHCSEEEECCSC--HHH
T ss_pred             CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCc-c-c-------cCCHHHHHHH--hcCCEEEECCCC--HHH
Confidence            678888654433322 3446778888898 6777655431 0 0       0010 01223  568999999994  433


Q ss_pred             ---hhcChHHHHHHHHHhhcC-CEEEEEchHHHHHHH
Q 015523          298 ---LQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHK  330 (405)
Q Consensus       298 ---~~~~~~l~~~l~~~~~~~-k~i~aic~g~~~La~  330 (405)
                         ......+.+.|++.+++| .++++.|+|+.++..
T Consensus       124 l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          124 LCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH  160 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred             HHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence               456788999999999999 899999999998753

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=92.72  E-value=0.12  Score=51.39  Aligned_cols=228  Identities=14%  Similarity=0.035  Sum_probs=112.9

Q ss_pred             cccEEEEcCCchhhhccccChHHHHHHHHHHHc-C-CEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC-Ccccc-
Q 015523           79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEE-K-RLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVK-  154 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~-~-~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~-~~~~~-  154 (405)
                      +||++|+=|| .... -.++..+.+.+|++..+ | .-++.+-..-.-+|..+|-++.+. |=|-  ...|+. ....+ 
T Consensus       144 ~~d~~i~e~~-gt~~-di~~~~~~~~~rq~~~~~~~~~~~~~h~~~~p~~~~~~e~ktkp-tq~s--v~~lrs~gi~pd~  218 (550)
T 1vco_A          144 KAEIVVVEVG-GTVG-DIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKP-TQHS--VATLRGVGIQPDI  218 (550)
T ss_dssp             TCSEEEEEEC-SCTT-SSTTHHHHHHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHH-HHHH--HHHHHHTTCCCSE
T ss_pred             CCCEEEEECC-CChh-HhhhHHHHHHHHHHhHhhCcCCEEEEEEeCeecccCCCCcCCCC-cchh--HHHHhcCCCccCE
Confidence            6899999765 2233 23566777778776533 2 122222221233567777666543 2231  111221 11111 


Q ss_pred             -------------------CcEEEeCCeEcCCCcccHHHHHHHHHHHhcChHHHHHHHHhccccc-ccCccccccccccc
Q 015523          155 -------------------SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNSLKKEEFNEVE  214 (405)
Q Consensus       155 -------------------~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~~~a~~~a~~l~~~~-~~~~~~~~~~~~~~  214 (405)
                                         .-++...+++...+..+-.++.+.+=++  |.  .+.+.+.+..+. .++...+..+....
T Consensus       219 lvvR~~~~~~~~~r~k~sL~~~v~~~~Vi~~~dvdt~y~lp~~lr~~--G~--~~~v~~~~~l~~~~~~l~~w~~~~~~~  294 (550)
T 1vco_A          219 LVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQ--GL--GRAVERALGLEAVIPNLSFWQEAVRVL  294 (550)
T ss_dssp             EEEEESSCCCHHHHHHHHHHHTCCGGGEEEEECCSCTTHHHHHHHHH--TH--HHHHHHHTTCCCCCCCCHHHHHHHHHH
T ss_pred             EEEeCCCCCCcchhcccchhcCCCccCeeecCCCChHHHHHHHHHHc--CC--hhhhHhhCCCCchhHHHHHhHHHHHhh
Confidence                               0144556788888877766565554332  33  333444544432 11111111111100


Q ss_pred             cccCCcCEEEEE-----eCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEc
Q 015523          215 WFFDRMPRVLIP-----IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILP  289 (405)
Q Consensus       215 ~~~~~~~~V~il-----~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livp  289 (405)
                      .......+|++.     +.|... +=.-.+...+...|.++.+...+.. .+.        ++ .+++. ...+|.|++|
T Consensus       295 ~~~~~~v~I~ivgkyv~l~D~y~-Sv~~aL~~~g~~~g~~v~I~~~d~~-~~~--------~~-~~~~~-L~~~DGIILp  362 (550)
T 1vco_A          295 KHPERTVKIAIAGKYVKMPDAYL-SLLEALRHAGIKNRARVEVKWVDAE-SLE--------AA-DLEEA-FRDVSGILVP  362 (550)
T ss_dssp             HSCSEEEEEEEEESCC---CTTH-HHHHHHHHHHHHTTEEEEEEEEEGG-GC----------C-CHHHH-TTTCSCEEEC
T ss_pred             cCCCCceEEcccCCeEEEEecHH-HHHHHHHHHHHHcCCeEEEEEeCcc-ccc--------cc-hHHHH-HhcCCEEEEC
Confidence            011122344432     233321 1111233344445677777644331 111        11 12111 2578999999


Q ss_pred             CCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          290 GGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       290 gG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ||.+...    ....++.++.+..+++|+.+||-|..+|+.+
T Consensus       363 GGfGd~~----~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a  400 (550)
T 1vco_A          363 GGFGVRG----IEGKVRAAQYARERKIPYLGICLGLQIAVIE  400 (550)
T ss_dssp             CCCSSTT----HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             CCCCCcc----hhhhHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence            9975432    2346788888888999999999999999754

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=91.28  E-value=0.48  Score=40.17  Aligned_cols=90  Identities=12%  Similarity=0.143  Sum_probs=49.3

Q ss_pred             EEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCccc-CCCCCCcccEEEEcCCchhhhcccc
Q 015523           19 NVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSI-SNCSHQVFDLIALPGGMPGSVRLRD   97 (405)
Q Consensus        19 ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~-~~~~~~~~d~liipgg~~~~~~~~~   97 (405)
                      ||+|+=+.+..   ...+.+.|++.|+++.++..+..  .           ..+ +.+...++|.+|+.||.....   +
T Consensus         2 ~i~iiDn~~s~---~~~i~~~l~~~G~~~~v~~~~~~--~-----------~~i~~~l~~~~~~~iil~gGpg~~~---~   62 (192)
T 1i1q_B            2 DILLLDNIDSF---TWNLADQLRTNGHNVVIYRNHIP--A-----------QTLIDRLATMKNPVLMLSPGPGVPS---E   62 (192)
T ss_dssp             EEEEEECSCSS---HHHHHHHHHHTTCEEEEEETTSC--S-----------HHHHHHHTTCSSEEEEECCCSSCGG---G
T ss_pred             cEEEEECCccH---HHHHHHHHHHCCCeEEEEECCCC--H-----------HHHHHHhhhccCCeEEECCCCcCch---h
Confidence            56666522221   24557888888999888765421  0           001 001111234466666632222   2


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .....+++ +..++++||.+||-|-. +|+.+
T Consensus        63 ~~~~~~l~-~~~~~~~PilGIC~G~Q-ll~~~   92 (192)
T 1i1q_B           63 AGCMPELL-TRLRGKLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             STTHHHHH-HHHBTTBCEEEETHHHH-HHHHH
T ss_pred             CchHHHHH-HHHhcCCCEEEECcChH-HHHHH
Confidence            22333334 45678999999999766 67764

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=90.54  E-value=0.14  Score=50.91  Aligned_cols=88  Identities=14%  Similarity=0.076  Sum_probs=53.8

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      .+||+||=+.+-.   ...+...+++.|..++++..+.. +            ..+.+.   .+|.||+|||...... .
T Consensus         7 ~~~IlIlD~g~~~---~~~i~r~lr~~G~~~~i~p~~~~-~------------~~i~~~---~~dgiILsGGp~s~~~-~   66 (525)
T 1gpm_A            7 KHRILILDFGSQY---TQLVARRVRELGVYCELWAWDVT-E------------AQIRDF---NPSGIILSGGPESTTE-E   66 (525)
T ss_dssp             SSEEEEEECSCTT---HHHHHHHHHHTTCEEEEEESCCC-H------------HHHHHH---CCSEEEECCCSSCTTS-T
T ss_pred             CCEEEEEECCCcc---HHHHHHHHHHCCCEEEEEECCCC-H------------HHHhcc---CCCEEEECCcCccccc-c
Confidence            3579888655422   24567889999999888864431 0            111222   3699999999422211 1


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ..+.+   .++.++.++||.+||.|-. +|+.
T Consensus        67 ~~~~~---~~~~~~~g~PvLGIC~G~Q-lla~   94 (525)
T 1gpm_A           67 NSPRA---PQYVFEAGVPVFGVCYGMQ-TMAM   94 (525)
T ss_dssp             TCCCC---CGGGGTSSSCEEEETHHHH-HHHH
T ss_pred             CCcch---HHHHHHCCCCEEEEChHHH-HHHH
Confidence            11222   2345578999999999766 5665

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=89.92  E-value=0.26  Score=48.42  Aligned_cols=97  Identities=13%  Similarity=0.062  Sum_probs=56.1

Q ss_pred             CCcEEEEEe-cCCCchhhHHHHHHHHHh----cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCch
Q 015523           16 FALNVLVPV-GFGTEEMEAVIIVDVLRR----AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP   90 (405)
Q Consensus        16 ~~~ki~ill-~~g~~~~e~~~~~~~l~~----~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~   90 (405)
                      ...+||++- |-+.. ..+..+.+.|.-    .+.++++...+.. .+... +.     ...+.+  ..+|.+++|||+.
T Consensus       292 ~~v~IalVGKY~~l~-DaY~Sv~eAL~hag~~~~~~V~I~wIds~-~l~~~-~~-----~~~~~L--~~~DgIIlpGG~G  361 (535)
T 3nva_A          292 KTINIALVGKYTKLK-DSYISIKEAIYHASAYIGVRPKLIWIEST-DLESD-TK-----NLNEIL--GNVNGIIVLPGFG  361 (535)
T ss_dssp             CEEEEEEEESCTTSG-GGGHHHHHHHHHHHHHTTCEEEEEEEEGG-GGCCS-SS-----CCTTTT--TSCSEEEECCCCS
T ss_pred             CeeEEEEEecCcCCc-hhHHHHHHHHHHHHHHcCCCeEEEEecch-hcccc-cc-----chhhhc--cCCCEEEECCCCC
Confidence            445677664 22222 233444555543    3556666554442 12111 10     011233  3699999999952


Q ss_pred             hhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhh
Q 015523           91 GSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLL  127 (405)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La  127 (405)
                       ..   ......++++.+.++++|+.+||.|-. +|+
T Consensus       362 -~~---~~~g~i~~ir~a~~~~~PiLGIClG~Q-ll~  393 (535)
T 3nva_A          362 -SR---GAEGKIKAIKYAREHNIPFLGICFGFQ-LSI  393 (535)
T ss_dssp             -ST---THHHHHHHHHHHHHHTCCEEEETHHHH-HHH
T ss_pred             -Cc---cHHHHHHHHHHHHHcCCcEEEECcchh-HHH
Confidence             22   235678899999999999999999755 444

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=89.90  E-value=0.32  Score=48.08  Aligned_cols=75  Identities=13%  Similarity=0.106  Sum_probs=48.8

Q ss_pred             HHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCC
Q 015523          237 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR  316 (405)
Q Consensus       237 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k  316 (405)
                      ..+...+++.|..++++..+.                ..+++..-.+|.||+|||....... ..+.+   .++....++
T Consensus        13 ~~i~r~l~~~G~~~~i~p~~~----------------~~~~i~~~~~dgiIlsGGp~s~~~~-~~~~~---~~~~~~~~~   72 (503)
T 2ywb_A           13 RLIARRLRELRAFSLILPGDA----------------PLEEVLKHRPQALILSGGPRSVFDP-DAPRP---DPRLFSSGL   72 (503)
T ss_dssp             HHHHHHHHTTTCCEEEEETTC----------------CHHHHHTTCCSEEEECCCSSCSSCT-TCCCC---CGGGGCSSC
T ss_pred             HHHHHHHHHCCCEEEEEECCC----------------CHHHHHhcCCCEEEECCCCchhccC-CCcch---HHHHHhCCC
Confidence            567788999998887774332                1122211246999999997433211 11111   234557899


Q ss_pred             EEEEEchHHHHHHHc
Q 015523          317 IYGAVCSSPIVLHKH  331 (405)
Q Consensus       317 ~i~aic~g~~~La~a  331 (405)
                      ||.+||-|..+|+.+
T Consensus        73 PvLGIC~G~Qlla~~   87 (503)
T 2ywb_A           73 PLLGICYGMQLLAQE   87 (503)
T ss_dssp             CEEEETHHHHHHHHT
T ss_pred             CEEEECHHHHHHHHH
Confidence            999999999999985

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=89.82  E-value=0.15  Score=52.52  Aligned_cols=88  Identities=17%  Similarity=0.120  Sum_probs=53.8

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      .+|+|+-+.+-...   .+...+++.|..++++..+.                ..+++...++|+||++||....... .
T Consensus        30 ~~I~VLDfg~q~~~---liar~lre~Gv~~~ivp~~~----------------~~e~i~~~~~dGIILsGGp~s~~~~-~   89 (697)
T 2vxo_A           30 GAVVILDAGAQYGK---VIDRRVRELFVQSEIFPLET----------------PAFAIKEQGFRAIIISGGPNSVYAE-D   89 (697)
T ss_dssp             CCEEEEEEC--CHH---HHHHHHHHTTCCEEEEETTC----------------CHHHHHHHTCSEEEEEECC--------
T ss_pred             CEEEEEECCCchHH---HHHHHHHHCCCEEEEEECCC----------------CHHHHhhcCCCEEEECCCCCcccCc-c
Confidence            57888866543222   25578888998888775442                1222222468999999997432210 1


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .+.+   .+...+.++||.+||.|..+|+.+
T Consensus        90 ~~~~---~~~i~~~g~PvLGIC~G~QlLa~~  117 (697)
T 2vxo_A           90 APWF---DPAIFTIGKPVLGICYGMQMMNKV  117 (697)
T ss_dssp             CCCC---CGGGTTSSCCEEEEEHHHHHHHHH
T ss_pred             chhH---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            1111   133457899999999999999875

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=88.53  E-value=0.43  Score=43.46  Aligned_cols=100  Identities=10%  Similarity=0.027  Sum_probs=58.3

Q ss_pred             cEEEEEecCCCchhh-HHHHHHHHHhcCC-EEEEEecCCCceeEeccCcEEecCcc-cCCCCCCcccEEEEcCCch-hhh
Q 015523           18 LNVLVPVGFGTEEME-AVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADTS-ISNCSHQVFDLIALPGGMP-GSV   93 (405)
Q Consensus        18 ~ki~ill~~g~~~~e-~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~-~~~~~~~~~d~liipgg~~-~~~   93 (405)
                      .||+|+-+-.....+ .....+.|++.|+ .++.+..... . .       ..+.. .+.+  .+.|+|+|+||-. ...
T Consensus        57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r-~-~-------a~~~~~~~~l--~~ad~I~v~GGnt~~l~  125 (291)
T 3en0_A           57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDR-A-Q-------GDDSGYRLFV--EQCTGIFMTGGDQLRLC  125 (291)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSG-G-G-------GGCHHHHHHH--HHCSEEEECCSCHHHHH
T ss_pred             CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCc-c-c-------cCCHHHHHHH--hcCCEEEECCCCHHHHH
Confidence            467777654333222 2344566666676 5655543221 0 0       00000 1112  2579999999931 122


Q ss_pred             ccccChHHHHHHHHHHHcC-CEEEEEccchHHhhhhc
Q 015523           94 RLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLLPW  129 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~-~~i~aic~g~~~~La~a  129 (405)
                      .......+.+.|++++++| .++++.|.| +.+++..
T Consensus       126 ~~l~~t~l~~~L~~~~~~G~~~~~GtSAG-A~i~~~~  161 (291)
T 3en0_A          126 GLLADTPLMDRIRQRVHNGEISLAGTSAG-AAVMGHH  161 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSSEEEEETHH-HHTTSSE
T ss_pred             HHHHhCCHHHHHHHHHHCCCeEEEEeCHH-HHhhhHh
Confidence            2345678899999999999 899999995 5456543

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=87.25  E-value=0.5  Score=46.90  Aligned_cols=45  Identities=24%  Similarity=0.262  Sum_probs=34.8

Q ss_pred             cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+|.|++|||.. ...   .+...++++++.++++|+.+||-|-. +|+.
T Consensus       343 ~~DGIilsGGpg-~~~---~~g~~~~i~~a~~~~~PiLGIClG~Q-ll~v  387 (545)
T 1s1m_A          343 GLDAILVPGGFG-YRG---VEGMITTARFARENNIPYLGICLGMQ-VALI  387 (545)
T ss_dssp             TCSEEEECCCCS-STT---HHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             cCCEEEECCCCC-Ccc---chhhHHHHHHHHHCCCcEEEECChHH-HHHH
Confidence            699999999952 221   24677889989889999999999765 5663

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=86.47  E-value=0.51  Score=46.90  Aligned_cols=45  Identities=22%  Similarity=0.186  Sum_probs=34.3

Q ss_pred             cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      .+|.|++|||+. ...   .+..++.++.+.++++|+.+||-|-. +|+.
T Consensus       355 ~~DGIILpGGfG-d~~---~~g~i~~ir~a~e~~iPiLGICLGmQ-lL~~  399 (550)
T 1vco_A          355 DVSGILVPGGFG-VRG---IEGKVRAAQYARERKIPYLGICLGLQ-IAVI  399 (550)
T ss_dssp             TCSCEEECCCCS-STT---HHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             cCCEEEECCCCC-Ccc---hhhhHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence            689999999952 221   24567888888889999999999765 4554

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=84.98  E-value=2  Score=38.28  Aligned_cols=84  Identities=18%  Similarity=0.037  Sum_probs=56.3

Q ss_pred             CcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh
Q 015523          219 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER  297 (405)
Q Consensus       219 ~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~  297 (405)
                      .|+||+|+  +|. .......+.+.|+..+|+|++++.+.- +            .+.+++  .+||+||++.-.  ...
T Consensus         3 ~m~~vLiV--~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~------------~~~~~L--~~yDvIIl~d~~--~~~   63 (259)
T 3rht_A            3 AMTRVLYC--GDTSLETAAGYLAGLMTSWQWEFDYIPSHVG-L------------DVGELL--AKQDLVILSDYP--AER   63 (259)
T ss_dssp             ---CEEEE--ESSCTTTTHHHHHHHHHHTTCCCEEECTTSC-B------------CSSHHH--HTCSEEEEESCC--GGG
T ss_pred             CCceEEEE--CCCCchhHHHHHHHHHHhCCceEEEeccccc-c------------cChhHH--hcCCEEEEcCCc--ccc
Confidence            46788888  333 345566788899999999999877652 1            123444  789999998532  122


Q ss_pred             hhcChHHHHHHHHHhhcCCEEEEEch
Q 015523          298 LQKSRILKKLLKEQKVAGRIYGAVCS  323 (405)
Q Consensus       298 ~~~~~~l~~~l~~~~~~~k~i~aic~  323 (405)
                        -++..++.|+++.++|.-++.+..
T Consensus        64 --l~~~~~~~L~~yV~~GGgLi~~gG   87 (259)
T 3rht_A           64 --MTAQAIDQLVTMVKAGCGLVMLGG   87 (259)
T ss_dssp             --BCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             --CCHHHHHHHHHHHHhCCeEEEecC
Confidence              356777888888888888877754

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=84.22  E-value=0.26  Score=50.66  Aligned_cols=89  Identities=17%  Similarity=0.076  Sum_probs=52.0

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR   96 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~   96 (405)
                      ..||+||=+.+-...   .+...+++.|..++++..+..                .+++...++|.||++||. +...-.
T Consensus        29 ~~~I~VLDfg~q~~~---liar~lre~Gv~~~ivp~~~~----------------~e~i~~~~~dGIILsGGp-~s~~~~   88 (697)
T 2vxo_A           29 EGAVVILDAGAQYGK---VIDRRVRELFVQSEIFPLETP----------------AFAIKEQGFRAIIISGGP-NSVYAE   88 (697)
T ss_dssp             CCCEEEEEEC--CHH---HHHHHHHHTTCCEEEEETTCC----------------HHHHHHHTCSEEEEEECC-------
T ss_pred             CCEEEEEECCCchHH---HHHHHHHHCCCEEEEEECCCC----------------HHHHhhcCCCEEEECCCC-CcccCc
Confidence            457999866652222   256788888998888865431                111111258999999994 321111


Q ss_pred             cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           97 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      +.+.+   .++.++.++||.+||.|-. +|+.+
T Consensus        89 ~~~~~---~~~i~~~g~PvLGIC~G~Q-lLa~~  117 (697)
T 2vxo_A           89 DAPWF---DPAIFTIGKPVLGICYGMQ-MMNKV  117 (697)
T ss_dssp             -CCCC---CGGGTTSSCCEEEEEHHHH-HHHHH
T ss_pred             cchhH---HHHHHhCCCCEEEECHHHH-HHHHH
Confidence            11111   1234568899999999766 57753

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=82.42  E-value=0.83  Score=45.11  Aligned_cols=75  Identities=17%  Similarity=0.055  Sum_probs=46.1

Q ss_pred             HHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCC
Q 015523           34 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR  113 (405)
Q Consensus        34 ~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~  113 (405)
                      ..+.+.+++.|..++++..+.. +            ..+.+.   .+|.||+|||. ........+.+   .++.++.++
T Consensus        13 ~~i~r~l~~~G~~~~i~p~~~~-~------------~~i~~~---~~dgiIlsGGp-~s~~~~~~~~~---~~~~~~~~~   72 (503)
T 2ywb_A           13 RLIARRLRELRAFSLILPGDAP-L------------EEVLKH---RPQALILSGGP-RSVFDPDAPRP---DPRLFSSGL   72 (503)
T ss_dssp             HHHHHHHHTTTCCEEEEETTCC-H------------HHHHTT---CCSEEEECCCS-SCSSCTTCCCC---CGGGGCSSC
T ss_pred             HHHHHHHHHCCCEEEEEECCCC-H------------HHHHhc---CCCEEEECCCC-chhccCCCcch---HHHHHhCCC
Confidence            5678889999988888754421 0            112222   47999999994 22111111111   234457899


Q ss_pred             EEEEEccchHHhhhhc
Q 015523          114 LYGAICAAPAVTLLPW  129 (405)
Q Consensus       114 ~i~aic~g~~~~La~a  129 (405)
                      ||.+||.|-. +|+.+
T Consensus        73 PvLGIC~G~Q-lla~~   87 (503)
T 2ywb_A           73 PLLGICYGMQ-LLAQE   87 (503)
T ss_dssp             CEEEETHHHH-HHHHT
T ss_pred             CEEEECHHHH-HHHHH
Confidence            9999999755 56653

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=81.61  E-value=3.5  Score=36.69  Aligned_cols=85  Identities=9%  Similarity=-0.162  Sum_probs=56.1

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      .|+||+|+- ......+...+.+.|+..+|+|+++.++.- +.            +..++  .+||+||++.-.  ... 
T Consensus         3 ~m~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~~------------~~~~L--~~yDvIIl~d~~--~~~-   63 (259)
T 3rht_A            3 AMTRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVG-LD------------VGELL--AKQDLVILSDYP--AER-   63 (259)
T ss_dssp             ---CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSC-BC------------SSHHH--HTCSEEEEESCC--GGG-
T ss_pred             CCceEEEEC-CCCchhHHHHHHHHHHhCCceEEEeccccc-cc------------ChhHH--hcCCEEEEcCCc--ccc-
Confidence            467888883 333345667788899999999999987753 11            11233  379999998531  222 


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEcc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICA  120 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~  120 (405)
                       -++...+.|+++.++|.-++.+..
T Consensus        64 -l~~~~~~~L~~yV~~GGgLi~~gG   87 (259)
T 3rht_A           64 -MTAQAIDQLVTMVKAGCGLVMLGG   87 (259)
T ss_dssp             -BCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             -CCHHHHHHHHHHHHhCCeEEEecC
Confidence             246777788888888888777755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	1e-37
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	7e-37
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	8e-36
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	1e-33
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	3e-34
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	4e-27
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	5e-28
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	1e-26
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	2e-27
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	1e-23
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	2e-22
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	8e-18
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	6e-22
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	1e-19
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	5e-21
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	6e-21
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	3e-15
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	6e-14
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	2e-14
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	1e-13
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	5e-14
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	3e-10

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score =  133 bits (335), Expect = 1e-37
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 5/184 (2%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSISDAA 279
             L+ +A GSEE E VT +D+L R  + V  ASV  + +  I  S+GVK++AD  + + A
Sbjct: 3   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVA 62

Query: 280 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKK 338
           +  YD+I+LPGG+ GAE  + S +L + +K+   +GRI  A+C++P  VL  H +     
Sbjct: 63  DGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGN 122

Query: 339 ATAHPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANVIDFALAIVSKFFGHARTRSVAE 396
            T  P++  K+  E     +VV D   K++TS+G    IDF L I+    G  +   VA 
Sbjct: 123 MTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVAS 182

Query: 397 GLVF 400
            LV 
Sbjct: 183 QLVM 186

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score =  131 bits (329), Expect = 7e-37
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 4/186 (2%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNCSH 77
            LV +  G+EE EAV  +D+L R G +VT ASV     L +  S G +L+AD  +   + 
Sbjct: 4   ALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVAD 63

Query: 78  QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 137
             +D+I LPGG+ G+   RD  +L +   +     R+  AICAAPA  L+P  +     +
Sbjct: 64  GEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNM 123

Query: 138 TCHPAFTDKLPTFWAVKSNIHVSGEVT--TSRGPGTSFEFALCLVEQLFGESVAKEIGEL 195
           T  P   DK+P    +   +     V   TS+GPGT+ +F L +++ L G   A E+   
Sbjct: 124 TGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQ 183

Query: 196 LLMHNA 201
           L+M   
Sbjct: 184 LVMAAG 189

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 8e-36
 Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 4/184 (2%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 280
           R L+ +A G+EE+E V  VD++RRA + V VA +     +  S+ V I  D S+ DA  E
Sbjct: 3   RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 62

Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 340
             YD+++LPGG  GA+ L +S  +K++LKEQ+    +  A+C+ P  L  H +    K T
Sbjct: 63  GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 122

Query: 341 AHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 397
            HP    K+ N      +  +V  DG ++TSRG     +FALAIV    G      V   
Sbjct: 123 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 182

Query: 398 LVFE 401
           LV +
Sbjct: 183 LVLK 186

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 1e-33
 Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 5/183 (2%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC-SHQ 78
            LV +  G EEME VI VDV+RRAG +VT+A +  +  V+ S    +  D S+ +     
Sbjct: 4   ALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEG 63

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
            +D++ LPGG  G+  L +   +K+I  +Q   K L  AICA P    L   +    ++T
Sbjct: 64  PYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTAL-LAHEIGFGSKVT 122

Query: 139 CHPAFTDKLPTFWAV---KSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 195
            HP   DK+         ++ +   G + TSRGPGTSFEFAL +VE L G+ VA ++   
Sbjct: 123 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 182

Query: 196 LLM 198
           L++
Sbjct: 183 LVL 185

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  123 bits (310), Expect = 3e-34
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 11/173 (6%)

Query: 220 MPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDA 278
           M R+ I +A    + E   +    R    V++V A+ +    + +  G+K+  D S    
Sbjct: 1   MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMP-VTSMGGLKVTPDTSYDAL 59

Query: 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 338
                D +++PGG++  +       L  L+K  +   R+   +C++   L   G+L    
Sbjct: 60  DPVDIDALVIPGGLSWEKGTAAD--LGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVA 117

Query: 339 ATAHPSVIGKLTN------EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 385
            T +     K            +  + V DG V+T+ G A  + FA+ I+   
Sbjct: 118 HTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA-PVSFAVEILKSL 169

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  104 bits (260), Expect = 4e-27
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 14/189 (7%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 78
           + + +     + E  ++    R   G ++  A+ +    V +  G ++  DTS       
Sbjct: 4   IAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPV 62

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
             D + +PGG+           L  +  +  +  RL   ICAA +      G+L     T
Sbjct: 63  DIDALVIPGGLSWEKGT--AADLGGLVKRFRDRDRLVAGICAAASAL-GGTGVLNDVAHT 119

Query: 139 CHPAFTDKLPT------FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL--FGESVAK 190
            +   + K          +  +      G V T+ G      FA+ +++ L  FG     
Sbjct: 120 GNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEA 178

Query: 191 EIGELLLMH 199
           E+      H
Sbjct: 179 ELQIFAAEH 187

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  106 bits (264), Expect = 5e-28
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 4/163 (2%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 281
           +VL   AN  E++E++     L+    +V +AS ER T I    G  +  D +       
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGT-ITGKHGYSVKVDLTFDKVNPE 60

Query: 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATA 341
            +D ++LPGG A        + +    K     G+   ++C  P +L   G+L+ +K T+
Sbjct: 61  EFDALVLPGGRAPERVRLNEKAVSIARKMFS-EGKPVASICHGPQILISAGVLRGRKGTS 119

Query: 342 HPSVIGKLTNEVVN--GTKVVVDGKVITSRGLANVIDFALAIV 382
           +P +   + N  V     +VVVDG  ++SR  A++  +    V
Sbjct: 120 YPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFV 162

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  102 bits (255), Expect = 1e-26
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 5/168 (2%)

Query: 18  LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 77
           + VL       E++E +     L+  G +V +AS E    +    G  +  D +    + 
Sbjct: 1   MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNP 59

Query: 78  QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 137
           + FD + LPGG        + + +       +E K +           L+  G+LR ++ 
Sbjct: 60  EEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVA--SICHGPQILISAGVLRGRKG 117

Query: 138 TCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
           T +P   D +       V + + V G   +SR P   + +    V+ L
Sbjct: 118 TSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL 165

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (260), Expect = 2e-27
 Identities = 33/165 (20%), Positives = 72/165 (43%), Gaps = 5/165 (3%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ-GVKIIADKSISDAAE 280
           ++ + I +  E+ E  +  D  R+A  +V+    +    +   +    +  DKSI +   
Sbjct: 3   KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTP 62

Query: 281 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 340
           + +D ++LP G    + L+         ++   +G+   A+C  P +L    +++ +K T
Sbjct: 63  AEFDALLLP-GGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLT 121

Query: 341 AHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIV 382
           A   +I  + N   E  +   VV   +++TSR   ++  F    +
Sbjct: 122 AVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREAL 166

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score = 94.1 bits (233), Expect = 1e-23
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 6/168 (3%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS-GTRLVADTSISNCSHQ 78
           + V +    E+ E     D  R+AG +V     +    V+       +  D SI   +  
Sbjct: 4   IAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPA 63

Query: 79  VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 138
            FD + LPGG      LR        T       +   AIC  P   L+   ++R +++T
Sbjct: 64  EFDALLLPGGHSPD-YLRGDNRFVTFTRDFVNSGKPVFAICHGPQ-LLISADVIRGRKLT 121

Query: 139 CHPAFTDKLPTFWAVKSNIHV---SGEVTTSRGPGTSFEFALCLVEQL 183
                   +    A   +  V     ++ TSR P     F    +  L
Sbjct: 122 AVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLL 169

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 91.9 bits (227), Expect = 2e-22
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 3/165 (1%)

Query: 219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA 278
           +  RV I IA+G + +        +   +   +V    R +++ A+ G  +     +   
Sbjct: 2   KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRR-SKVTAANGSTVQPHHHLEGF 60

Query: 279 AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 338
             ++ D I +PGG   AE L K+      ++E     +  GA   +  ++ K   L    
Sbjct: 61  RSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVT 120

Query: 339 ATAHPSVIGKLTNEVVNGTK--VVVDGKVITSRGLANVIDFALAI 381
            ++   V        +   K     D   I       + +F  AI
Sbjct: 121 VSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAI 165

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 78.8 bits (193), Expect = 8e-18
 Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 4/167 (2%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           V + +  G + +        +    A   +       +V A++G+ +     +      +
Sbjct: 6   VAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTM 64

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC 139
            D I +PGG   +  L           +     +  GA   A  + +     L +  ++ 
Sbjct: 65  VDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDL-VAKAIALPQVTVSS 123

Query: 140 HPAFTDKL--PTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLF 184
                +     T   VK               G   EF   + +   
Sbjct: 124 EAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQHRN 170

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 91.0 bits (225), Expect = 6e-22
 Identities = 35/196 (17%), Positives = 64/196 (32%), Gaps = 39/196 (19%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMASVE------------PQLEVEASSGTRLVADTSISN 74
           G    E  +   V +  G  V +AS++             +    A +   L     +S 
Sbjct: 22  GLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSK 81

Query: 75  CSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLL-----PW 129
                FD I LPGG        D E L+ +  + AE+ R+  A+C  P+  +        
Sbjct: 82  DDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGT 141

Query: 130 GLLRRKQITCHPAFTDKLP-----TFWAVK-----------------SNIHVSGEVTTSR 167
            +++ K +T      ++         + ++                       G + T +
Sbjct: 142 PIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQ 201

Query: 168 GPGTSFEFALCLVEQL 183
            P +S   A  +V  L
Sbjct: 202 NPQSSRSTAEKVVAAL 217

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 84.9 bits (209), Expect = 1e-19
 Identities = 40/214 (18%), Positives = 64/214 (29%), Gaps = 50/214 (23%)

Query: 222 RVLIPIAN----------GSEEIEIVTIVDILRRAKVDVVVASVE------------RST 259
           RVL+ + N          G    E      + +    DV VAS++               
Sbjct: 4   RVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKD 63

Query: 260 QIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYG 319
              A     +     +S      +D I LPGG         +  L+ +L++    GRI  
Sbjct: 64  PSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIA 123

Query: 320 AVCSSPIVLHK------HGLLKAKKATAHPSVIGKLTNEVVN------------------ 355
           AVC  P  L          ++K K  T+      +     V+                  
Sbjct: 124 AVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVR 183

Query: 356 ----GTKVVVDGKVITSRGLANVIDFALAIVSKF 385
                   V DG +IT +   +    A  +V+  
Sbjct: 184 GGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAAL 217

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 88.6 bits (219), Expect = 5e-21
 Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 32/202 (15%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMASVE-PQLEV----------------EASSGTRLVAD 69
           G+E  EAV+ +  + R+GAQ    + +  Q++V                  ++       
Sbjct: 16  GSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEI 75

Query: 70  TSISNCSHQVFDLIALPGGMPGSVRL----------RDCEILKKITSKQAEEKRLYGAIC 119
             ++       D + +PGG   +  L               LK +     +  +  G +C
Sbjct: 76  RPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMC 135

Query: 120 AAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTS---FEFA 176
            APA+    +    R  I       + L    A      V   V        +   +  A
Sbjct: 136 IAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLA 195

Query: 177 LCLVEQLFGESVAKEIGELLLM 198
             + E      + K +  +L++
Sbjct: 196 QNIAE--AASGIDKLVSRVLVL 215

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 88.2 bits (218), Expect = 6e-21
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 42/207 (20%)

Query: 220 MPRVLIPIAN-----GSEEIEIVTIVDILRRAKVDVVVASV-----------------ER 257
           M ++ + ++      GSE  E V  +  + R+    V  +                  E 
Sbjct: 1   MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET 60

Query: 258 STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRI----------LKKL 307
              ++ +  +     + ++ A  +  D +I+PGG   A+ L               LK L
Sbjct: 61  RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL 120

Query: 308 LKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVI--------GKLTNEVVNGTKV 359
            +    AG+  G +C +P +L K      +                  +     V+   V
Sbjct: 121 AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV 180

Query: 360 VVDGKVITSRG--LANVIDFALAIVSK 384
             D K++T+    LA  I  A + + K
Sbjct: 181 DEDNKIVTTPAYMLAQNIAEAASGIDK 207

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 73.2 bits (179), Expect = 3e-15
 Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 49/206 (23%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMASVEP-QLEVEASS--------------------GTR 65
           G   +E ++ +  L  AG +  +A++     + E  +                      +
Sbjct: 68  GNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPK 127

Query: 66  LVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV- 124
            +AD   S  +   +  I +PGG    + L + + +        +  R   ++C  PA  
Sbjct: 128 KLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAF 187

Query: 125 --TLLPWGLLRRKQITCHPAFTDKL---------PTFWAVK----------------SNI 157
                    L    I   P   DK             W                     +
Sbjct: 188 LALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRV 247

Query: 158 HVSGEVTTSRGPGTSFEFALCLVEQL 183
           H   ++ T   P  +        +++
Sbjct: 248 HKDRKLLTGDSPFAANALGKLAAQEM 273

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 69.3 bits (169), Expect = 6e-14
 Identities = 34/205 (16%), Positives = 55/205 (26%), Gaps = 50/205 (24%)

Query: 228 ANGSEEIEIVTIVDILRRAKVDVVVASVE---------------------RSTQIVASQG 266
           + G+  IE +  +  L  A  +  VA++                              + 
Sbjct: 66  STGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRN 125

Query: 267 VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 326
            K +AD   S  A+S Y  I +PGG      L +S+ +   L+      R   ++C  P 
Sbjct: 126 PKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA 185

Query: 327 VLH----KHGLLKAKKATAHPSVIGKLTNEVVNG-------------------------T 357
                      L      A P    K T E+                             
Sbjct: 186 AFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITG 245

Query: 358 KVVVDGKVITSRGLANVIDFALAIV 382
           +V  D K++T               
Sbjct: 246 RVHKDRKLLTGDSPFAANALGKLAA 270

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (171), Expect = 2e-14
 Identities = 27/211 (12%), Positives = 54/211 (25%), Gaps = 54/211 (25%)

Query: 27  GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS---------------------GTR 65
           G   +EA+   +  R+ G +V   S   +   +  S                        
Sbjct: 24  GVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKT 83

Query: 66  LVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVT 125
           L    +    +   + +     G          + L+ I S+      +  A+C  PA+ 
Sbjct: 84  LAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMF 143

Query: 126 L------LPWGLLRRKQITCHPAFTDKL---------PTFWAVK---------------- 154
                      L+  K IT      + +              V+                
Sbjct: 144 DGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGP 203

Query: 155 --SNIHVSGEVTTSRGPGTSFEFALCLVEQL 183
                   G + T   P ++   A+  ++ L
Sbjct: 204 WDDYSITDGRLVTGVNPASAHSTAVRSIDAL 234

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (164), Expect = 1e-13
 Identities = 27/228 (11%), Positives = 58/228 (25%), Gaps = 67/228 (29%)

Query: 222 RVLIPIAN------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIV------- 262
           +VL+ + +            G   +E +   +  R+   +V   S               
Sbjct: 4   KVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKD 63

Query: 263 --------------ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLL 308
                         +     +   K+  +     Y + +   G        K++ L+ + 
Sbjct: 64  FLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIA 123

Query: 309 KEQKVAGRIYGAVCSSPIVL-------HKHGLLKAKKATAHPSVIGKLTNEVVN------ 355
            E    G +  AVC  P +            L++ K  T    V   +            
Sbjct: 124 SEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNL 183

Query: 356 ---------------------GTKVVVDGKVITSRGLANVIDFALAIV 382
                                    + DG+++T    A+    A+  +
Sbjct: 184 ATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSI 231

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 67.1 bits (163), Expect = 5e-14
 Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 222 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 281
            V I + +     +++ I+  L+   V   +       ++ A  G  +    + + A   
Sbjct: 5   VVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRM-GEVTADDGTVLPIAATFAGAPSL 63

Query: 282 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKA 339
             D +I+P G      +  +      L E     +       +        +    + 
Sbjct: 64  TVDAVIVPCG--NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGEE 119

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 3/105 (2%)

Query: 20  VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 79
           V + +       + + I+  L+  G    +       EV A  GT L    + +      
Sbjct: 6   VAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLT 64

Query: 80  FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAV 124
            D + +P G      + D         +  +  +       A   
Sbjct: 65  VDAVIVPCGNIA--DIADNGDANYYLMEAYKHLKPIALAGDARKF 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	100.0
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	100.0
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	100.0
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.97
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.97
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.94
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.93
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.93
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.92
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.91
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.88
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.87
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.87
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.87
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.85
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.47
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.46
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.35
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.31
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.2
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	98.15
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.07
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	97.62
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.58
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	97.57
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	97.34
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	97.3
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.3
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	97.3
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	96.89
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	96.76
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	96.67
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	96.54
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	95.97
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	95.97
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	95.81
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	95.79
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	95.64
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	95.45
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	95.32
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	95.18
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	94.57
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	94.18
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	93.9
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	92.83
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	92.76
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	91.85
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	91.2
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	88.38
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	86.69
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	85.05

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=280.54  Aligned_cols=182  Identities=37%  Similarity=0.562  Sum_probs=170.6

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcC-CCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-ESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~-~~~~D~livpgG~~~~~~~  298 (405)
                      .|||+|+++|||++.|+..|+++|+++|++++++|++++.++++++|+.+.+|..+++++ ..+||+|+||||...+..+
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l   80 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL   80 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccc
Confidence            489999999999999999999999999999999999886689999999999999998764 3589999999997667778


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc---CcccCCcEEEcCCeEecCChhhHH
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVI  375 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~---~~~~~~~~v~dg~iiTa~g~~~~~  375 (405)
                      .+++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++   .++.++.+|.|||+|||+|+.++.
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~vv~Dg~iiT~~g~~~~~  160 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSF  160 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGHH
T ss_pred             cchHHHHHHHHHhhccccceeecccCcchhhhcCCccccccccchhHHHHHHhcCceEEecccEEecCCEEECCCccHHH
Confidence            89999999999999999999999999999999999999999999999999877   366788999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHhhcccc
Q 015523          376 DFALAIVSKFFGHARTRSVAEGLVFE  401 (405)
Q Consensus       376 ~~~l~~i~~l~g~~~a~~v~~~l~~~  401 (405)
                      +|++++++++.|++.|+++++.|+++
T Consensus       161 d~al~li~~l~g~~~a~~va~~l~l~  186 (186)
T d1p5fa_         161 EFALAIVEALNGKEVAAQVKAPLVLK  186 (186)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhhccC
Confidence            99999999999999999999999874

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-38  Score=273.62  Aligned_cols=182  Identities=37%  Similarity=0.569  Sum_probs=167.1

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCC-CcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH-QVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~-~~~d~liipgg~~~~~~~   95 (405)
                      .|||+|+++|||++.|+..|+++|+++|++++++|++++.++++++|+.+.+|.++++++. .+||+|+||||+.....+
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l   80 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL   80 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccc
Confidence            3799999999999999999999999999999999998766899999999999999887643 479999999996556778


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC---CccccCcEEEeCCeEcCCCcccH
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTS  172 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~---~~~~~~~~v~dg~iiT~~g~~~~  172 (405)
                      .+++.+.+||+++++++++|+++|+| .++|+++|+|+|+++|+||...+.+++   ..+.++++|+|||+|||+|+.++
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G-~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~vv~Dg~iiT~~g~~~~  159 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAG-PTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS  159 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTT-HHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGH
T ss_pred             cchHHHHHHHHHhhccccceeecccC-cchhhhcCCccccccccchhHHHHHHhcCceEEecccEEecCCEEECCCccHH
Confidence            88999999999999999999999996 558999999999999999999999888   34567889999999999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHhcccc
Q 015523          173 FEFALCLVEQLFGESVAKEIGELLLMH  199 (405)
Q Consensus       173 ~~~~l~ii~~~~g~~~a~~~a~~l~~~  199 (405)
                      .+|++++|+++.|++.|+++++.|+++
T Consensus       160 ~d~al~li~~l~g~~~a~~va~~l~l~  186 (186)
T d1p5fa_         160 FEFALAIVEALNGKEVAAQVKAPLVLK  186 (186)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhccC
Confidence            999999999999999999999999864

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.5e-37  Score=267.47  Aligned_cols=186  Identities=33%  Similarity=0.556  Sum_probs=172.3

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCC--ceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ--LEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~--~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      +|+.|+++|||++.|+..|+++|+++|+++++++....  .++++++|+++.+|..++++++.+||+|+||||+.....+
T Consensus         2 ~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l   81 (195)
T d2ab0a1           2 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF   81 (195)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHH
T ss_pred             ceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccc
Confidence            58999999999999999999999999999999996442  3799999999999999999888899999999996556777


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCCCccccCcEEEeCC--eEcCCCcccHH
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGE--VTTSRGPGTSF  173 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~--iiT~~g~~~~~  173 (405)
                      .+++.+++|||++++++|+|+++|+|++++|+++|+|+|+++|+||...+.+....++++++|+|||  +|||+|+.+++
T Consensus        82 ~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~vv~Dgn~~liTa~g~~a~~  161 (195)
T d2ab0a1          82 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAI  161 (195)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGHH
T ss_pred             cccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcccceEeecceEEECCCeEEECCCHHHHH
Confidence            8899999999999999999999999877789999999999999999999999877888999999997  69999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHHHhcccccccC
Q 015523          174 EFALCLVEQLFGESVAKEIGELLLMHNADN  203 (405)
Q Consensus       174 ~~~l~ii~~~~g~~~a~~~a~~l~~~~~~~  203 (405)
                      ||++++|+++.|.+.|+++++.|+++...+
T Consensus       162 d~al~lie~l~g~e~A~~va~~l~~~~~~~  191 (195)
T d2ab0a1         162 DFGLKIIDLLVGREKAHEVASQLVMAAGIY  191 (195)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTTCCTTSC
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHhcCCcchh
Confidence            999999999999999999999999987665

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.3e-37  Score=266.31  Aligned_cols=184  Identities=36%  Similarity=0.589  Sum_probs=171.8

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCC--ceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS--TQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~--~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      .++.|+++|||++.|+..|+++|+++|+++++++++++  .++++++|+++.+|..++++++.+||+|++|||...+..+
T Consensus         2 ~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l   81 (195)
T d2ab0a1           2 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF   81 (195)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHH
T ss_pred             ceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccc
Confidence            58899999999999999999999999999999997542  3789999999999999999988999999999998667778


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHH-HHHHHcCCCCCCeeecCcchhhhhhcCcccCCcEEEcCC--eEecCChhhHH
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGK--VITSRGLANVI  375 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~-~~La~aGlL~g~~~t~~~~~~~~l~~~~~~~~~~v~dg~--iiTa~g~~~~~  375 (405)
                      .+++.+++|||++++++|+|+++|+|+ ++|+++|||+|+++|+||..++.+....+.++++|+|||  +|||+|+.+++
T Consensus        82 ~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~vv~Dgn~~liTa~g~~a~~  161 (195)
T d2ab0a1          82 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAI  161 (195)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGHH
T ss_pred             cccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcccceEeecceEEECCCeEEECCCHHHHH
Confidence            899999999999999999999999995 899999999999999999999999888888999999997  69999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHhhcccccCC
Q 015523          376 DFALAIVSKFFGHARTRSVAEGLVFEYPR  404 (405)
Q Consensus       376 ~~~l~~i~~l~g~~~a~~v~~~l~~~~~r  404 (405)
                      +|++++++++.|++.|+++++.|++++.+
T Consensus       162 d~al~lie~l~g~e~A~~va~~l~~~~~~  190 (195)
T d2ab0a1         162 DFGLKIIDLLVGREKAHEVASQLVMAAGI  190 (195)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTTCCTTS
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHhcCCcch
Confidence            99999999999999999999999997753

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.4e-36  Score=259.18  Aligned_cols=163  Identities=25%  Similarity=0.422  Sum_probs=155.2

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      |||+|+++|||++.|+..|++.|+++|++++++|++++ +++++.|+++.++.+++++++.+||+|++|||. +...+..
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~-~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~-~~~~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGR-APERVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCc-eEeecCCcEEeccccHHHcCcccccEEEEeccc-chhhhcc
Confidence            68999999999999999999999999999999999998 999999999999999999988999999999996 5666778


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHHHHH
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDFA  378 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~~~~  378 (405)
                      ++++++||+++++++|+|+++|+|+++|+++|||+||++|+||...+.+++  ..+.++++|.|||+|||+|+.++.+|+
T Consensus        79 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~iiTs~g~~~~~~f~  158 (166)
T d1g2ia_          79 NEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWM  158 (166)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTTHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHH
T ss_pred             ChHHHHHHHHHHhcCCeeeeccccchhhhhcCcccCCccccCccHHHHHHHcCCeEcCCCEEEeCCEEECCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998876  577899999999999999999999999


Q ss_pred             HHHHHHc
Q 015523          379 LAIVSKF  385 (405)
Q Consensus       379 l~~i~~l  385 (405)
                      +++++.|
T Consensus       159 ~~~i~~L  165 (166)
T d1g2ia_         159 REFVKLL  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9999976

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.3e-36  Score=256.02  Aligned_cols=163  Identities=26%  Similarity=0.378  Sum_probs=153.2

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcccc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD   97 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~   97 (405)
                      |||+|+++|||++.|+..|+++|+++|++++++|++++ +|++++|+.+.+|.+++++++.+||+++||||+ +......
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~-~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~-~~~~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGR-APERVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCc-eEeecCCcEEeccccHHHcCcccccEEEEeccc-chhhhcc
Confidence            68999999999999999999999999999999999997 999999999999999999988899999999994 5666778


Q ss_pred             ChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccHHHH
Q 015523           98 CEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFEF  175 (405)
Q Consensus        98 ~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~~~~  175 (405)
                      ++.+.+||+++++++++|+++|+|+ ++|+++|+|+||++|+||...+.+++  ..++++++|.|||+|||+|+.++.+|
T Consensus        79 ~~~~~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~iiTs~g~~~~~~f  157 (166)
T d1g2ia_          79 NEKAVSIARKMFSEGKPVASICHGP-QILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAW  157 (166)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTT-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHH
T ss_pred             ChHHHHHHHHHHhcCCeeeeccccc-hhhhhcCcccCCccccCccHHHHHHHcCCeEcCCCEEEeCCEEECCCHHHHHHH
Confidence            8999999999999999999999965 58999999999999999999988876  67889999999999999999999999


Q ss_pred             HHHHHHHh
Q 015523          176 ALCLVEQL  183 (405)
Q Consensus       176 ~l~ii~~~  183 (405)
                      ++++|+.+
T Consensus       158 ~~~~i~~L  165 (166)
T d1g2ia_         158 MREFVKLL  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=5.8e-34  Score=246.89  Aligned_cols=173  Identities=22%  Similarity=0.345  Sum_probs=152.5

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHh-CCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      |+||+|+++|||.+.|+..+.+.|+. .|++++++|++++ +|++++|+.+.||..++++++.+||+|+||||.. .. .
T Consensus         1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~-~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~-~~-~   77 (188)
T d2fexa1           1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-WE-K   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-HH-H
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC-cEEcCCCCEEeecCchHHCChhhccEEEecCCcc-cc-c
Confidence            68999999999999999999999986 7999999999998 9999999999999999999889999999999973 33 3


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcc-hhhhhhc----C-cccCCcEEEcCCeEecCChh
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPS-VIGKLTN----E-VVNGTKVVVDGKVITSRGLA  372 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~-~~~~l~~----~-~~~~~~~v~dg~iiTa~g~~  372 (405)
                      ..++++++|||++++++++|+++|+|+++|+++|||+|+++|+||. ..+.++.    . +..+..+|.|||+|||+|+ 
T Consensus        78 ~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV~DgnliTs~G~-  156 (188)
T d2fexa1          78 GTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-  156 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTT-
T ss_pred             cccHHHHHHHHHHHHhCCEEEEecchhHHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCCEEEECCCEEECCCc-
Confidence            5678899999999999999999999999999999999999999854 3344433    2 3345568999999999985 


Q ss_pred             hHHHHHHHHHHHc--cCHHHHHHHHh
Q 015523          373 NVIDFALAIVSKF--FGHARTRSVAE  396 (405)
Q Consensus       373 ~~~~~~l~~i~~l--~g~~~a~~v~~  396 (405)
                      ++++|+++++++|  +|++.++++..
T Consensus       157 aa~d~al~ii~~L~~~~~e~~~~~~~  182 (188)
T d2fexa1         157 APVSFAVEILKSLGLFGPEAEAELQI  182 (188)
T ss_dssp             CHHHHHHHHHHHTTCCSHHHHHHHGG
T ss_pred             hHHHHHHHHHHHhcccCHHHHHHHHH
Confidence            6799999999997  79999998843

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-33  Score=240.07  Aligned_cols=165  Identities=21%  Similarity=0.358  Sum_probs=150.8

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCC-cEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g-~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      .|||+|+++|||++.|+..|+++|+++|++++++|++++.++.++.| .++.+|.+++++++.+||+|++|||+ +...+
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~-~~~~l   79 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SPDYL   79 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HHHHH
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccch-hhhhh
Confidence            37999999999999999999999999999999999987768887765 89999999999998999999999997 56668


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCc-EEEcCCeEecCChhhHH
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTK-VVVDGKVITSRGLANVI  375 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~-~v~dg~iiTa~g~~~~~  375 (405)
                      ..++++++||+++++++|+|+++|+|+.+|+++|+|+||++|+||...+.+++  ..+.+++ +|+|||+|||+|+.++.
T Consensus        80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~~liTs~g~~~~~  159 (170)
T d1oi4a1          80 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP  159 (170)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGHH
T ss_pred             ccChHHHHHHHHHhhcCCeeeecccchHHHhhhhhccccccccCchHHHHHHhCCCEEecCCEEEECCEEEECCChhhHH
Confidence            89999999999999999999999999999999999999999999999888876  3455555 56788999999999999


Q ss_pred             HHHHHHHHHc
Q 015523          376 DFALAIVSKF  385 (405)
Q Consensus       376 ~~~l~~i~~l  385 (405)
                      +|++++++.|
T Consensus       160 ~fa~~~i~~L  169 (170)
T d1oi4a1         160 AFNREALRLL  169 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999976

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=7.2e-33  Score=239.95  Aligned_cols=171  Identities=20%  Similarity=0.313  Sum_probs=149.1

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHh-cCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~-~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      |+||+|+++|||.+.|+..+.+.|++ .|+++.++|++++ +|++++|+++.||..++++++.+||+|+||||. ... .
T Consensus         1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~-~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~-~~~-~   77 (188)
T d2fexa1           1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL-SWE-K   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBS-HHH-H
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC-cEEcCCCCEEeecCchHHCChhhccEEEecCCc-ccc-c
Confidence            57999999999999999999999986 6999999999997 999999999999999999988899999999995 333 3


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccC-ccccCCC----Cccc-cCcEEEeCCeEcCCCc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPA-FTDKLPT----FWAV-KSNIHVSGEVTTSRGP  169 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~-~~~~l~~----~~~~-~~~~v~dg~iiT~~g~  169 (405)
                      ..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||. ..+.+..    ..+. ++.+|.|||+|||+| 
T Consensus        78 ~~~~~l~~~lr~~~~~~~~i~aiC~g~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV~DgnliTs~G-  155 (188)
T d2fexa1          78 GTAADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAG-  155 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHH-HHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECT-
T ss_pred             cccHHHHHHHHHHHHhCCEEEEecchh-HHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCCEEEECCCEEECCC-
Confidence            567789999999999999999999965 5799999999999999854 4444444    3344 456899999999998 


Q ss_pred             ccHHHHHHHHHHHh--cChHHHHHH
Q 015523          170 GTSFEFALCLVEQL--FGESVAKEI  192 (405)
Q Consensus       170 ~~~~~~~l~ii~~~--~g~~~a~~~  192 (405)
                      .+++|+++++++++  +|++.++++
T Consensus       156 ~aa~d~al~ii~~L~~~~~e~~~~~  180 (188)
T d2fexa1         156 SAPVSFAVEILKSLGLFGPEAEAEL  180 (188)
T ss_dssp             TCHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             chHHHHHHHHHHHhcccCHHHHHHH
Confidence            57899999999997  688888877

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-32  Score=235.33  Aligned_cols=165  Identities=21%  Similarity=0.257  Sum_probs=150.0

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccC-cEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSG-TRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g-~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      .|||+||++|||++.|+..++++|++++++++++++.++++++++.| .++.+|.+++++.+.+||+|+||||+ +...+
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~-~~~~l   79 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SPDYL   79 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HHHHH
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccch-hhhhh
Confidence            36999999999999999999999999999999999987768888766 89999999999988899999999994 56668


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcE-EEeCCeEcCCCcccH
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNI-HVSGEVTTSRGPGTS  172 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~-v~dg~iiT~~g~~~~  172 (405)
                      ..++.+++||+++++++++|+++|+|+. +|+++|+|+|+++|+||.....+++  .++.++++ |.||++|||+|+.++
T Consensus        80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~~-~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~~liTs~g~~~~  158 (170)
T d1oi4a1          80 RGDNRFVTFTRDFVNSGKPVFAICHGPQ-LLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDL  158 (170)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHH-HHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGH
T ss_pred             ccChHHHHHHHHHhhcCCeeeecccchH-HHhhhhhccccccccCchHHHHHHhCCCEEecCCEEEECCEEEECCChhhH
Confidence            8899999999999999999999999765 7999999999999999998888776  67777764 556789999999999


Q ss_pred             HHHHHHHHHHh
Q 015523          173 FEFALCLVEQL  183 (405)
Q Consensus       173 ~~~~l~ii~~~  183 (405)
                      .+|++++|+.+
T Consensus       159 ~~fa~~~i~~L  169 (170)
T d1oi4a1         159 PAFNREALRLL  169 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999976

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.97  E-value=4.1e-31  Score=228.97  Aligned_cols=165  Identities=19%  Similarity=0.199  Sum_probs=154.2

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      +.|||+|+++|||++.|+..+++.|+++|++++++|++++ +++++.|..+.++.++++.++.+||++++|||......+
T Consensus         2 ~~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~-~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~   80 (184)
T d1sy7a1           2 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL   80 (184)
T ss_dssp             TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCC-cccccccccccccccccccccccceEEEEeecccccccc
Confidence            4589999999999999999999999999999999999998 999999999999999999988899999999997666778


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCeeecCcchhhhhhc--CcccCCcEEEcCCeEecCChhhHHH
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVID  376 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiTa~g~~~~~~  376 (405)
                      ..++.+++||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+..  ....+..++.||+++|++++....+
T Consensus        81 ~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg~~it~~~~~~~~~  160 (184)
T d1sy7a1          81 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGE  160 (184)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHH
T ss_pred             ccccchhHHHHHHHhcCCceEEechHHHHHHHcCCCCCceeccCcchhhhhccccceeccCceEeECCEEecCCHhHHHH
Confidence            89999999999999999999999999999999999999999999999888875  5667788899999999999999999


Q ss_pred             HHHHHHHH
Q 015523          377 FALAIVSK  384 (405)
Q Consensus       377 ~~l~~i~~  384 (405)
                      |+.++.++
T Consensus       161 f~~~i~~h  168 (184)
T d1sy7a1         161 FFYAIAQH  168 (184)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            98888764

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.97  E-value=8.8e-31  Score=226.88  Aligned_cols=165  Identities=13%  Similarity=0.111  Sum_probs=153.1

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      +++||+||++|||+..|+..+.++|+++|+++++++++++ +++++.|..+.++.++.+.++.+||++++|||......+
T Consensus         2 ~~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~-~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~   80 (184)
T d1sy7a1           2 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL   80 (184)
T ss_dssp             TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCC-cccccccccccccccccccccccceEEEEeecccccccc
Confidence            6789999999999999999999999999999999999998 999999999999999999998899999999996556677


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceeeccCccccCCC--CccccCcEEEeCCeEcCCCcccHH
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSF  173 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~--~~~~~~~~v~dg~iiT~~g~~~~~  173 (405)
                      ..++.+.+||+++++++|+|+++|+| .++|+++|+|+|+++||||...+.+..  .++.+..++.||+++|+++.....
T Consensus        81 ~~~~~~~~~l~~~~~~~k~i~aic~G-~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg~~it~~~~~~~~  159 (184)
T d1sy7a1          81 SKNGRALHWIREAFGHLKAIGATGEA-VDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLG  159 (184)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTH-HHHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHH
T ss_pred             ccccchhHHHHHHHhcCCceEEechH-HHHHHHcCCCCCceeccCcchhhhhccccceeccCceEeECCEEecCCHhHHH
Confidence            88999999999999999999999996 558999999999999999999998887  677788899999999999999999


Q ss_pred             HHHHHHHHH
Q 015523          174 EFALCLVEQ  182 (405)
Q Consensus       174 ~~~l~ii~~  182 (405)
                      +|+..|.++
T Consensus       160 ~f~~~i~~h  168 (184)
T d1sy7a1         160 EFFYAIAQH  168 (184)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            998888664

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=1.2e-27  Score=212.00  Aligned_cols=169  Identities=23%  Similarity=0.270  Sum_probs=141.2

Q ss_pred             CcCEEEEEeCC----------CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCC-------------CcEEeeCCCc
Q 015523          219 RMPRVLIPIAN----------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ-------------GVKIIADKSI  275 (405)
Q Consensus       219 ~~~~V~il~~~----------g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~-------------g~~v~~~~~l  275 (405)
                      |.+||+|++.+          |+...|+..|+++|+++||+|+++|++++ .+....             ...+..+..+
T Consensus         1 M~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg-~~~~d~~~~~~~~~~~~~~~~~l~~~~~l   79 (221)
T d1u9ca_           1 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARL   79 (221)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred             CCceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCC-cceeccCccccccchhHHHHHHhhCCCCh
Confidence            35789999964          89999999999999999999999999998 443221             1224455567


Q ss_pred             cCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcC------CCCCCeeecCcchhhh-
Q 015523          276 SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKAKKATAHPSVIGK-  348 (405)
Q Consensus       276 ~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aG------lL~g~~~t~~~~~~~~-  348 (405)
                      +++++++||+|++|||++.+..++.++.+.++++++++++|+|++||+|+.+|+.++      |++||++|+|+...+. 
T Consensus        80 ~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~~a~~~~g~~ll~Gk~~T~~p~~~e~~  159 (221)
T d1u9ca_          80 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEERE  159 (221)
T ss_dssp             CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred             hHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeeeccccCCCCceeCCceeeccCCHHHhh
Confidence            888889999999999997788899999999999999999999999999999999855      8999999999765443 


Q ss_pred             --------------hhc--Cccc-----CCcEEEcCCeEecCChhhHHHHHHHHHHHccCH
Q 015523          349 --------------LTN--EVVN-----GTKVVVDGKVITSRGLANVIDFALAIVSKFFGH  388 (405)
Q Consensus       349 --------------l~~--~~~~-----~~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~g~  388 (405)
                                    +++  +.+.     +..+|+|||+||++++.++.+|++.+++.|..+
T Consensus       160 ~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         160 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             cccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                          332  2333     345999999999999999999999999998653

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.6e-26  Score=204.47  Aligned_cols=166  Identities=16%  Similarity=0.213  Sum_probs=139.2

Q ss_pred             cCEEEEEeCC------------CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCC----------------------
Q 015523          220 MPRVLIPIAN------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ----------------------  265 (405)
Q Consensus       220 ~~~V~il~~~------------g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~----------------------  265 (405)
                      +|||+|++.+            |++..|+..|+++|+++||+|+++|+.|+ ......                      
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   80 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF   80 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCC-CCCCcccccccccccHHHHHHhhhhHHH
Confidence            4788888854            89999999999999999999999999987 332110                      


Q ss_pred             CcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc-------CCCCCCe
Q 015523          266 GVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-------GLLKAKK  338 (405)
Q Consensus       266 g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a-------GlL~g~~  338 (405)
                      +-.+..+..++++++++||+|++|||++.+..+.+++.+.++|++++.+||+|++||+|+.+|+.+       ++++||+
T Consensus        81 ~~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~~~~~~g~~ll~Gk~  160 (236)
T d1qvwa_          81 NKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKS  160 (236)
T ss_dssp             HHHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTCSBTTTTCE
T ss_pred             HHHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHHhhcccccccccCce
Confidence            123556678888899999999999999888899999999999999999999999999999999876       5999999


Q ss_pred             eecCcchhhh-------------------hhc--Cccc------CCcEEEcCCeEecCChhhHHHHHHHHHHHcc
Q 015523          339 ATAHPSVIGK-------------------LTN--EVVN------GTKVVVDGKVITSRGLANVIDFALAIVSKFF  386 (405)
Q Consensus       339 ~t~~~~~~~~-------------------l~~--~~~~------~~~~v~dg~iiTa~g~~~~~~~~l~~i~~l~  386 (405)
                      +|+++...+.                   +++  +.+.      +..+|+|||+||++++.++..+++++++.|-
T Consensus       161 vT~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         161 ITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             eccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            9999765443                   222  2232      3568999999999999999999999999874

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=3e-26  Score=202.88  Aligned_cols=168  Identities=25%  Similarity=0.275  Sum_probs=136.9

Q ss_pred             CcEEEEEecC----------CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEecc-------------CcEEecCcccC
Q 015523           17 ALNVLVPVGF----------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS-------------GTRLVADTSIS   73 (405)
Q Consensus        17 ~~ki~ill~~----------g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~-------------g~~v~~~~~~~   73 (405)
                      .|||+|++.+          ||...|+..|+++|+++|++|+++|+.++ ++....             ...+..+..++
T Consensus         2 ~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg-~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~   80 (221)
T d1u9ca_           2 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARLS   80 (221)
T ss_dssp             CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEECC
T ss_pred             CceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCC-cceeccCccccccchhHHHHHHhhCCCChh
Confidence            4689999975          78889999999999999999999999987 443221             11233445677


Q ss_pred             CCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcC------CCCCcceeeccCccc--
Q 015523           74 NCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLRRKQITCHPAFTD--  145 (405)
Q Consensus        74 ~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~ag------ll~g~~~t~~~~~~~--  145 (405)
                      ++.+.+||+|+||||+.....+..++.+.++++++++++|+|++||+|++ +|..++      +++|+++|+|+...+  
T Consensus        81 ~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~-~l~~a~~~~g~~ll~Gk~~T~~p~~~e~~  159 (221)
T d1u9ca_          81 KDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSFTDEEERE  159 (221)
T ss_dssp             GGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred             HCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccce-eeeccccCCCCceeCCceeeccCCHHHhh
Confidence            77778999999999987778899999999999999999999999999987 577644      899999999976433  


Q ss_pred             -------------cCCC--Ccccc-----CcEEEeCCeEcCCCcccHHHHHHHHHHHhcCh
Q 015523          146 -------------KLPT--FWAVK-----SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGE  186 (405)
Q Consensus       146 -------------~l~~--~~~~~-----~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~g~  186 (405)
                                   .+++  .++.+     ..+|+|||+||++|+.++.+|++.+|+.+..+
T Consensus       160 ~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         160 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             cccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                         2332  34433     34999999999999999999999999998654

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.8e-25  Score=196.95  Aligned_cols=166  Identities=16%  Similarity=0.165  Sum_probs=135.3

Q ss_pred             CcEEEEEecC------------CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEec----------------------c
Q 015523           17 ALNVLVPVGF------------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS----------------------S   62 (405)
Q Consensus        17 ~~ki~ill~~------------g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~----------------------~   62 (405)
                      +|||+|++.+            |+...|+..|+++|+++||+|+++|+.++ +....                      .
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   80 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF   80 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCC-CCCCcccccccccccHHHHHHhhhhHHH
Confidence            6788888865            78889999999999999999999999886 32110                      1


Q ss_pred             CcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc-------CCCCCc
Q 015523           63 GTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-------GLLRRK  135 (405)
Q Consensus        63 g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a-------gll~g~  135 (405)
                      +..+..+.+++++++.+||+|++|||+..+..+.+++.+.++++++++++|+|++||+|++ +|+.+       ++++||
T Consensus        81 ~~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~-~L~~~~~~~~g~~ll~Gk  159 (236)
T d1qvwa_          81 NKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-MFDGLTDKKTGRPLIEGK  159 (236)
T ss_dssp             HHHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTCSBTTTTC
T ss_pred             HHHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHH-HHHHHhhcccccccccCc
Confidence            1124455677888888999999999987778899999999999999999999999999988 45544       599999


Q ss_pred             ceeeccCccc-------------------cCCC--Ccccc------CcEEEeCCeEcCCCcccHHHHHHHHHHHhc
Q 015523          136 QITCHPAFTD-------------------KLPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQLF  184 (405)
Q Consensus       136 ~~t~~~~~~~-------------------~l~~--~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~ii~~~~  184 (405)
                      ++|+++...+                   .+++  ..+.+      ..+|+|||+||++++.++.++++.+|+.+.
T Consensus       160 ~vT~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         160 SITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             EECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             eeccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            9999975433                   2332  33432      349999999999999999999999999864

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5.1e-24  Score=192.28  Aligned_cols=168  Identities=19%  Similarity=0.216  Sum_probs=134.4

Q ss_pred             CcCEEEEEeC--------------CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCC-CcE---------------
Q 015523          219 RMPRVLIPIA--------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ-GVK---------------  268 (405)
Q Consensus       219 ~~~~V~il~~--------------~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~-g~~---------------  268 (405)
                      ..+||+|++.              .|+++.|+..|++.|+++||+|+++|++|+ ++.... .+.               
T Consensus        43 g~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~-~~~~D~~s~~~~d~~~~~~~~~~~~  121 (279)
T d1n57a_          43 GKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKS  121 (279)
T ss_dssp             SSCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHH
T ss_pred             CCceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCCcCccccccccHHHHHHHHhHHH
Confidence            4579999986              689999999999999999999999999998 553211 100               


Q ss_pred             -EeeCCCc-----cCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc----CCCCCCe
Q 015523          269 -IIADKSI-----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH----GLLKAKK  338 (405)
Q Consensus       269 -v~~~~~l-----~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a----GlL~g~~  338 (405)
                       +.....+     +..++.+||+|++|||++.+..+.+++.+.++|++++++||+|++||||+.+|..+    ++++||+
T Consensus       122 ~~~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~  201 (279)
T d1n57a_         122 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS  201 (279)
T ss_dssp             HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred             HHhCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeE
Confidence             1111111     22245789999999999888899999999999999999999999999999999877    5999999


Q ss_pred             eecCcchhh-------------------hhhc--CcccCC----cEEEcCCeEecCChhhHHHHHHHHHHHccC
Q 015523          339 ATAHPSVIG-------------------KLTN--EVVNGT----KVVVDGKVITSRGLANVIDFALAIVSKFFG  387 (405)
Q Consensus       339 ~t~~~~~~~-------------------~l~~--~~~~~~----~~v~dg~iiTa~g~~~~~~~~l~~i~~l~g  387 (405)
                      +|+++...+                   .+++  ..+.+.    .+|+|||+||++++.++..++..+++.|..
T Consensus       202 vT~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~  275 (279)
T d1n57a_         202 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLA  275 (279)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHH
T ss_pred             EeecCCHHHhccchhccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHH
Confidence            999876543                   2333  233333    489999999999999999999999998753

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.2e-22  Score=181.53  Aligned_cols=166  Identities=18%  Similarity=0.253  Sum_probs=129.8

Q ss_pred             CcEEEEEecC--------------CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcE-----------------
Q 015523           17 ALNVLVPVGF--------------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTR-----------------   65 (405)
Q Consensus        17 ~~ki~ill~~--------------g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~-----------------   65 (405)
                      .+||+|++.+              |+...|+..|+.+|+++||+|+++|++|+ ++.-+....                 
T Consensus        44 ~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~-~~~~D~~s~~~~d~~~~~~~~~~~~~  122 (279)
T d1n57a_          44 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKSL  122 (279)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHHH
T ss_pred             CceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCCcCccccccccHHHHHHHHhHHHH
Confidence            4799999964              88899999999999999999999999997 553211100                 


Q ss_pred             Ee-----cCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc----CCCCCcc
Q 015523           66 LV-----ADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW----GLLRRKQ  136 (405)
Q Consensus        66 v~-----~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a----gll~g~~  136 (405)
                      +.     .+...+.....+||+|++|||+.....+.+++.+.++|+.+++++|+|++||+|++. |..+    ++++|++
T Consensus       123 ~~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~-Ll~a~~g~~l~~Gk~  201 (279)
T d1n57a_         123 FRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAA-FLALRHGDNPLNGYS  201 (279)
T ss_dssp             HHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGG-GGGGTTSCCTTTTCE
T ss_pred             HhCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchh-hhhcccCCcccCCeE
Confidence            00     001112223358999999999877788999999999999999999999999999985 4444    5899999


Q ss_pred             eeeccCcccc-------------------CCC--CccccC----cEEEeCCeEcCCCcccHHHHHHHHHHHhc
Q 015523          137 ITCHPAFTDK-------------------LPT--FWAVKS----NIHVSGEVTTSRGPGTSFEFALCLVEQLF  184 (405)
Q Consensus       137 ~t~~~~~~~~-------------------l~~--~~~~~~----~~v~dg~iiT~~g~~~~~~~~l~ii~~~~  184 (405)
                      +|+++...+.                   +++  +.+.+.    .+|+|||+||++++.++.+++..+++++.
T Consensus       202 vT~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll  274 (279)
T d1n57a_         202 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEML  274 (279)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHH
T ss_pred             EeecCCHHHhccchhccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHH
Confidence            9999765443                   222  334433    49999999999999999999999999875

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.87  E-value=2.6e-22  Score=167.99  Aligned_cols=117  Identities=12%  Similarity=0.122  Sum_probs=110.6

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      +.+||+||++|||+..|+..+++.|+++|+++.+++++.+ ++++..|.++.++.++++.++.+||+|+||||.  ...+
T Consensus         2 ~grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~-~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~--~~~l   78 (156)
T d1p80a1           2 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCGN--IADI   78 (156)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCSC--THHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccc-cccccceeEEeeeeeeccCCcccCCEEEeeCCc--hHHH
Confidence            3589999999999999999999999999999999999998 999999999999999999988899999999995  3457


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCe
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK  338 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~  338 (405)
                      ..++++++||+++++++|+|+++|+|+.+|+.+|+++++.
T Consensus        79 ~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~agl~~~~~  118 (156)
T d1p80a1          79 ADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGE  118 (156)
T ss_dssp             HTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTTTCCSSCC
T ss_pred             hcchHHHHHHHHHHHcCCeEEEECchHHHHHHcCCCcCCC
Confidence            8999999999999999999999999999999999998764

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.5e-22  Score=175.03  Aligned_cols=149  Identities=23%  Similarity=0.286  Sum_probs=117.0

Q ss_pred             cCEEEEEe-----CCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecC-----------C-------CcEEeeCCCcc
Q 015523          220 MPRVLIPI-----ANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS-----------Q-------GVKIIADKSIS  276 (405)
Q Consensus       220 ~~~V~il~-----~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~-----------~-------g~~v~~~~~l~  276 (405)
                      |+||+|++     +||+++.|+..+++.|+++|++++++|++++ .+...           .       .+.+.....++
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~-~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~   79 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA   79 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCC-ccceeccCCCcccccccceeeeeeeeeccccCChH
Confidence            68999997     4999999999999999999999999999976 33221           1       11122334688


Q ss_pred             CcCCCCccEEEEcCCccchHhhh----------cChHHHHHHHHHhhcCCEEEEEchHHHHHHHcCCCCCCe-eecCcch
Q 015523          277 DAAESVYDLIILPGGVAGAERLQ----------KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK-ATAHPSV  345 (405)
Q Consensus       277 ~~~~~~~D~livpgG~~~~~~~~----------~~~~l~~~l~~~~~~~k~i~aic~g~~~La~aGlL~g~~-~t~~~~~  345 (405)
                      ++++.+||+|++|||++....+.          .++.+++++++|+++||+|++||+|+.+|++++.+++++ .|.|+..
T Consensus        80 ~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~~~~~~~~~~~~~  159 (217)
T d1vhqa_          80 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDT  159 (217)
T ss_dssp             GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCCEECCCSCHHH
T ss_pred             HCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhccCCCeeeccChhh
Confidence            88889999999999987666553          358999999999999999999999999999999888875 4456667


Q ss_pred             hhhhhc--CcccC----CcEEE-cCCeEecC
Q 015523          346 IGKLTN--EVVNG----TKVVV-DGKVITSR  369 (405)
Q Consensus       346 ~~~l~~--~~~~~----~~~v~-dg~iiTa~  369 (405)
                      .+.+++  ..+.+    +.+|. ||||||+.
T Consensus       160 ~~~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         160 AEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             HHHHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             HHHHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            777776  33333    33443 59999984

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.87  E-value=6.4e-22  Score=165.56  Aligned_cols=117  Identities=13%  Similarity=0.099  Sum_probs=109.1

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      +++||+||++|||+..|+..+.++|+++|+++.+++++.+ ++++++|..+.++.++.+.++.+||+|+||||.  ...+
T Consensus         2 ~grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~-~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~--~~~l   78 (156)
T d1p80a1           2 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCGN--IADI   78 (156)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCSC--THHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccc-cccccceeEEeeeeeeccCCcccCCEEEeeCCc--hHHH
Confidence            5789999999999999999999999999999999999998 999999999999999999998899999999994  3457


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ  136 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~  136 (405)
                      ..++.+++||+++++++|+|+++|+|+. +|+.+|++++..
T Consensus        79 ~~~~~~~~~i~e~~~~~K~I~aic~g~~-~La~agl~~~~~  118 (156)
T d1p80a1          79 ADNGDANYYLMEAYKHLKPIALAGDARK-FKATIKIADQGE  118 (156)
T ss_dssp             HTCHHHHHHHHHHHHTTCCEEEEGGGGG-GGGTTTCCSSCC
T ss_pred             hcchHHHHHHHHHHHcCCeEEEECchHH-HHHHcCCCcCCC
Confidence            8899999999999999999999999765 799999998754

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2e-22  Score=176.51  Aligned_cols=149  Identities=20%  Similarity=0.205  Sum_probs=115.5

Q ss_pred             CcEEEEEe-----cCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEec------------------cCcEEecCcccC
Q 015523           17 ALNVLVPV-----GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS------------------SGTRLVADTSIS   73 (405)
Q Consensus        17 ~~ki~ill-----~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~------------------~g~~v~~~~~~~   73 (405)
                      |+||+|++     +||+++.|+..+++.|+++|+++++++|+++ .+...                  .++....+.+++
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~-~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~   79 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA   79 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCC-ccceeccCCCcccccccceeeeeeeeeccccCChH
Confidence            67999997     5899999999999999999999999999886 33221                  112222334688


Q ss_pred             CCCCCcccEEEEcCCchhhhccc----------cChHHHHHHHHHHHcCCEEEEEccchHHhhhhcCCCCCcceee-ccC
Q 015523           74 NCSHQVFDLIALPGGMPGSVRLR----------DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITC-HPA  142 (405)
Q Consensus        74 ~~~~~~~d~liipgg~~~~~~~~----------~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~agll~g~~~t~-~~~  142 (405)
                      ++++.+||+|++|||+.....+.          .++.+.++++++++++|||++||+|++ +|++++.+++++.++ |+.
T Consensus        80 ~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~-~l~~~~~~~~~~~~~~~~~  158 (217)
T d1vhqa_          80 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKIFDFPLRLTIGTDID  158 (217)
T ss_dssp             GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHHCSSCCEECCCSCHH
T ss_pred             HCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHH-HHHHHhccCCCeeeccChh
Confidence            88888999999999976555443          468899999999999999999999987 799998888775544 555


Q ss_pred             ccccCCC--CccccC---cEEEe--CCeEcCC
Q 015523          143 FTDKLPT--FWAVKS---NIHVS--GEVTTSR  167 (405)
Q Consensus       143 ~~~~l~~--~~~~~~---~~v~d--g~iiT~~  167 (405)
                      ..+.+++  ..+++.   .+++|  ||+||+.
T Consensus       159 ~~~~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         159 TAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             HHHHHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             hHHHHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            6677765  555542   34555  8999974

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.47  E-value=1.5e-07  Score=80.41  Aligned_cols=89  Identities=24%  Similarity=0.293  Sum_probs=68.0

Q ss_pred             cCCcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-
Q 015523          217 FDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-  295 (405)
Q Consensus       217 ~~~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-  295 (405)
                      +.++|||+|+.++|. ..|   ....|++.|+++.++..                   .+++  .++|.||+|||.... 
T Consensus         3 ~~~~mkIgii~~~Gn-~~s---~~~al~~~G~~~~~v~~-------------------~~~l--~~~D~lIlPGG~~~~~   57 (202)
T d1q7ra_           3 FQSNMKIGVLGLQGA-VRE---HVRAIEACGAEAVIVKK-------------------SEQL--EGLDGLVLPGGESTTM   57 (202)
T ss_dssp             CCCCCEEEEESCGGG-CHH---HHHHHHHTTCEEEEECS-------------------GGGG--TTCSEEEECCCCHHHH
T ss_pred             cccCCEEEEEECCCC-HHH---HHHHHHHCCCcEEEECC-------------------HHHH--hcCCEEEECCCCcHHH
Confidence            467899999999874 333   45789999999888731                   1234  679999999986322 


Q ss_pred             HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      ........+.++|+++.++++++.+||.|..+|+.
T Consensus        58 ~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~~   92 (202)
T d1q7ra_          58 RRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAK   92 (202)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEE
T ss_pred             HHHhhhhHHHHHHhhhccccceeeeeehhhHHhhh
Confidence            12234466789999999999999999999999975

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.46  E-value=5.1e-07  Score=79.49  Aligned_cols=102  Identities=13%  Similarity=0.196  Sum_probs=74.0

Q ss_pred             CCcCEEEEEeCCCC-cHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          218 DRMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       218 ~~~~~V~il~~~g~-~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      ++++||+||.++|. ++.|+.   ..|+.+|++++.+..+.-  +             -...+..+||+|++|||..-.+
T Consensus         4 ~~kpkvaVl~~pGtNcd~e~~---~Af~~aG~~~~~v~~~dl--~-------------~~~~~L~~~~~lvipGGFSygD   65 (262)
T d1t3ta2           4 GARPKVAVLREQGVNSHVEMA---AAFHRAGFDAIDVHMSDL--L-------------GGRIGLGNFHALVACGGFSYGD   65 (262)
T ss_dssp             TCCCEEEEEECTTBCCHHHHH---HHHHHTTCEEEEEEHHHH--H-------------HTSCCGGGCSEEEECCBCGGGG
T ss_pred             CCCCeEEEEeCCCCCcHHHHH---HHHHHcCCceEEEEeeec--c-------------cCcccccccceEEEeccccccc
Confidence            45689999999997 888866   467779999998866530  0             0111236799999999885333


Q ss_pred             hh----------hcChHHHHHHHHHh-hcCCEEEEEchHHHHHHHcC-CCCCC
Q 015523          297 RL----------QKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHG-LLKAK  337 (405)
Q Consensus       297 ~~----------~~~~~l~~~l~~~~-~~~k~i~aic~g~~~La~aG-lL~g~  337 (405)
                      .+          ..+..+.+.+.+|+ +++++|.+||+|..+|.++| |+.|.
T Consensus        66 ~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg~  118 (262)
T d1t3ta2          66 VLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS  118 (262)
T ss_dssp             TTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred             cccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCCc
Confidence            32          33555666666666 46999999999999999986 55553

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.35  E-value=3.6e-07  Score=77.42  Aligned_cols=87  Identities=22%  Similarity=0.270  Sum_probs=66.1

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch-Hhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERL  298 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~-~~~  298 (405)
                      |+||+|+-++|.. .|   .+..|++.|+++.++..                   .+++  .++|.||+|||.... ...
T Consensus         1 m~~igv~~~~G~~-~~---~~~al~~~G~~~~~i~~-------------------~~~l--~~~D~lIlPGG~~~~~~~~   55 (195)
T d2nv0a1           1 MLTIGVLGLQGAV-RE---HIHAIEACGAAGLVVKR-------------------PEQL--NEVDGLILPGGESTTMRRL   55 (195)
T ss_dssp             CCEEEEECSSSCC-HH---HHHHHHHTTCEEEEECS-------------------GGGG--GGCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEecCChH-HH---HHHHHHHCCCcEEEECC-------------------HHHH--hhCCEEEECCCCccHHHHH
Confidence            7899999998854 33   36778999999887732                   1233  568999999985322 223


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .....+.++|+++.++++++.+||.|..+|++.
T Consensus        56 ~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~   88 (195)
T d2nv0a1          56 IDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (195)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             hhhchhcchhhhhhhhcceeeeccccHHHHHhh
Confidence            345567888999999999999999999999864

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.31  E-value=3.4e-07  Score=78.04  Aligned_cols=87  Identities=21%  Similarity=0.148  Sum_probs=63.1

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VR   94 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~   94 (405)
                      ++|||+||.++| +.   ......|++.|+++.++...                   ++++  ++|.||+|||.... ..
T Consensus         5 ~~mkIgii~~~G-n~---~s~~~al~~~G~~~~~v~~~-------------------~~l~--~~D~lIlPGG~~~~~~~   59 (202)
T d1q7ra_           5 SNMKIGVLGLQG-AV---REHVRAIEACGAEAVIVKKS-------------------EQLE--GLDGLVLPGGESTTMRR   59 (202)
T ss_dssp             CCCEEEEESCGG-GC---HHHHHHHHHTTCEEEEECSG-------------------GGGT--TCSEEEECCCCHHHHHH
T ss_pred             cCCEEEEEECCC-CH---HHHHHHHHHCCCcEEEECCH-------------------HHHh--cCCEEEECCCCcHHHHH
Confidence            467999998876 33   34468899999998888421                   1333  69999999995222 22


Q ss_pred             cccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           95 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                      ......+.++|+++.++++|+.+||.|-. +|++
T Consensus        60 ~l~~~~l~~~I~~~~~~gkPiLGIClG~Q-ll~~   92 (202)
T d1q7ra_          60 LIDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAK   92 (202)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEE
T ss_pred             HhhhhHHHHHHhhhccccceeeeeehhhH-Hhhh
Confidence            22345678899999999999999999644 6765

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=8.4e-07  Score=75.10  Aligned_cols=87  Identities=21%  Similarity=0.169  Sum_probs=62.8

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh-hcc
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~-~~~   95 (405)
                      |+|||||-++|-. .|   ....|++.|+++.++...                   ++++  ++|.||+|||.... ...
T Consensus         1 m~~igv~~~~G~~-~~---~~~al~~~G~~~~~i~~~-------------------~~l~--~~D~lIlPGG~~~~~~~~   55 (195)
T d2nv0a1           1 MLTIGVLGLQGAV-RE---HIHAIEACGAAGLVVKRP-------------------EQLN--EVDGLILPGGESTTMRRL   55 (195)
T ss_dssp             CCEEEEECSSSCC-HH---HHHHHHHTTCEEEEECSG-------------------GGGG--GCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEecCChH-HH---HHHHHHHCCCcEEEECCH-------------------HHHh--hCCEEEECCCCccHHHHH
Confidence            6899999998733 33   367889999998888421                   1232  68999999984221 222


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .....+.++|+++.++++||.+||.|- -+|++.
T Consensus        56 ~~~~~~~~~I~~~~~~g~pilGIC~G~-Qll~~~   88 (195)
T d2nv0a1          56 IDTYQFMEPLREFAAQGKPMFGTCAGL-IILAKE   88 (195)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHH-HHHSBC
T ss_pred             hhhchhcchhhhhhhhcceeeeccccH-HHHHhh
Confidence            334467788999999999999999964 467763

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=98.15  E-value=2.2e-06  Score=74.35  Aligned_cols=96  Identities=20%  Similarity=0.185  Sum_probs=70.3

Q ss_pred             CcCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          219 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       219 ~~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      +.|||.|+-...+  .+...+.+.|++.|++++++-+..+             +...+++  .+||++|++||..+....
T Consensus         2 ~~mrvli~qh~~~--e~~G~~~~~l~~~g~~~~~~~~~~~-------------~~~p~~l--~~~d~iii~Ggp~~~~d~   64 (230)
T d1o1ya_           2 HHVRVLAIRHVEI--EDLGMMEDIFREKNWSFDYLDTPKG-------------EKLERPL--EEYSLVVLLGGYMGAYEE   64 (230)
T ss_dssp             CCCEEEEECSSTT--SSCTHHHHHHHHTTCEEEEECGGGT-------------CCCSSCG--GGCSEEEECCCSCCTTCT
T ss_pred             CceEEEEEECCCC--CCcHHHHHHHHHCCCEEEEEECCCC-------------CcCCcch--hhCCEEEEcCCCcccccc
Confidence            4689988865444  3455678899999999999866543             1111223  579999999986543221


Q ss_pred             ---hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 ---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ---~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                         .-...+.++|++..+.++||.+||-|..+|+.+
T Consensus        65 ~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a  100 (230)
T d1o1ya_          65 EKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  100 (230)
T ss_dssp             TTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHH
Confidence               224567899999999999999999999999876

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.07  E-value=9e-06  Score=71.29  Aligned_cols=99  Identities=14%  Similarity=0.107  Sum_probs=67.8

Q ss_pred             CcEEEEEecCCCc-hhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~g~~-~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      ..||+||.++|.+ +.|.   ...|+.+|++++.+..+.-  +        .     ......+||+|++|||+.-.+.+
T Consensus         6 kpkvaVl~~pGtNcd~e~---~~Af~~aG~~~~~v~~~dl--~--------~-----~~~~L~~~~~lvipGGFSygD~l   67 (262)
T d1t3ta2           6 RPKVAVLREQGVNSHVEM---AAAFHRAGFDAIDVHMSDL--L--------G-----GRIGLGNFHALVACGGFSYGDVL   67 (262)
T ss_dssp             CCEEEEEECTTBCCHHHH---HHHHHHTTCEEEEEEHHHH--H--------H-----TSCCGGGCSEEEECCBCGGGGTT
T ss_pred             CCeEEEEeCCCCCcHHHH---HHHHHHcCCceEEEEeeec--c--------c-----CcccccccceEEEeccccccccc
Confidence            3599999999976 5554   3578889999999876531  0        0     01122479999999997444443


Q ss_pred             cc----------ChHHHHHHHHHHH-cCCEEEEEccchHHhhhhcC-CCCC
Q 015523           96 RD----------CEILKKITSKQAE-EKRLYGAICAAPAVTLLPWG-LLRR  134 (405)
Q Consensus        96 ~~----------~~~~~~~l~~~~~-~~~~i~aic~g~~~~La~ag-ll~g  134 (405)
                      ..          +..+...+.+++. .+++|.+||+|.. +|.++| ++.|
T Consensus        68 ~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQ-iL~elg~l~pg  117 (262)
T d1t3ta2          68 GAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPG  117 (262)
T ss_dssp             STTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTT
T ss_pred             cchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHH-HHHHhcccCCC
Confidence            32          3444555566664 5899999999766 799986 5554

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.58  E-value=4.9e-05  Score=64.01  Aligned_cols=50  Identities=28%  Similarity=0.529  Sum_probs=38.4

Q ss_pred             CCccEEEEcC-Cccc--hHhhhcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          281 SVYDLIILPG-GVAG--AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       281 ~~~D~livpg-G~~~--~~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..+|.||+|| |..+  +..+ +...+.+.|+++.++++||.+||.|..+|+..
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~   93 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQLLFEE   93 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHHTTEEE
T ss_pred             hccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEecceeEEeee
Confidence            4689999999 5311  1223 33467888999999999999999999999853

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=5.5e-05  Score=65.21  Aligned_cols=96  Identities=13%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      +.|||.||-...+  .+...+.++|++.|++++++-+..+..+         |    +++  .+||++||+||..+....
T Consensus         2 ~~mrvli~qh~~~--e~~G~~~~~l~~~g~~~~~~~~~~~~~~---------p----~~l--~~~d~iii~Ggp~~~~d~   64 (230)
T d1o1ya_           2 HHVRVLAIRHVEI--EDLGMMEDIFREKNWSFDYLDTPKGEKL---------E----RPL--EEYSLVVLLGGYMGAYEE   64 (230)
T ss_dssp             CCCEEEEECSSTT--SSCTHHHHHHHHTTCEEEEECGGGTCCC---------S----SCG--GGCSEEEECCCSCCTTCT
T ss_pred             CceEEEEEECCCC--CCcHHHHHHHHHCCCEEEEEECCCCCcC---------C----cch--hhCCEEEEcCCCcccccc
Confidence            3568877765444  4566789999999999999876543100         0    122  369999999994222211


Q ss_pred             c---cChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 R---DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 ~---~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .   -.....++|++..++++||.+||-|.. +|+.+
T Consensus        65 ~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lla~a  100 (230)
T d1o1ya_          65 EKYPFLKYEFQLIEEILKKEIPFLGICLGSQ-MLAKV  100 (230)
T ss_dssp             TTCTHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHhcceEEEeecCHH-HHHHH
Confidence            1   124567899999999999999999766 57653

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.34  E-value=0.00019  Score=60.07  Aligned_cols=88  Identities=17%  Similarity=0.162  Sum_probs=60.0

Q ss_pred             cCEEEEEeC-CCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhh
Q 015523          220 MPRVLIPIA-NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL  298 (405)
Q Consensus       220 ~~~V~il~~-~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~  298 (405)
                      |+||+|+=+ +++.    -.....|++.|..++++..                |....++  .+||.+|+|||...... 
T Consensus         1 m~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~~----------------d~~~~~~--~~~dgiIl~Gg~~~~~~-   57 (196)
T d2a9va1           1 MLKIYVVDNGGQWT----HREWRVLRELGVDTKIVPN----------------DIDSSEL--DGLDGLVLSGGAPNIDE-   57 (196)
T ss_dssp             CCBEEEEEESCCTT----CHHHHHHHHTTCBCCEEET----------------TSCGGGG--TTCSEEEEEEECSCGGG-
T ss_pred             CCEEEEEECCCcHH----HHHHHHHHHCCCeEEEEeC----------------CCCHHHH--hcCCcEEEecccccccc-
Confidence            678888754 2342    2456778888887776632                2234444  67999999998644332 


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                       ....+.++++....+++|+.+||-|..+|+.+
T Consensus        58 -~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~   89 (196)
T d2a9va1          58 -ELDKLGSVGKYIDDHNYPILGICVGAQFIALH   89 (196)
T ss_dssp             -TGGGHHHHHHHHHHCCSCEEEETHHHHHHHHH
T ss_pred             -ccchhhhHHHHHhhcCceEEEeehhhhhhhhc
Confidence             22334555555667899999999999999886

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.30  E-value=0.00022  Score=60.54  Aligned_cols=89  Identities=17%  Similarity=0.253  Sum_probs=55.3

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCC-eEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH--
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE--  296 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~-~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~--  296 (405)
                      .+||+||.++|.....    ...|++.++ .+++.-.+                 +.+++  .++|.||+|||.....  
T Consensus         2 ~ikIGvl~l~G~~~~~----~~al~~lg~~~~~v~~~~-----------------~~~~l--~~~D~lIlPGgg~~~~~~   58 (218)
T d2abwa1           2 EITIGVLSLQGDFEPH----INHFIKLQIPSLNIIQVR-----------------NVHDL--GLCDGLVIPGGESTTVRR   58 (218)
T ss_dssp             CEEEEEECTTSCCHHH----HHHHHTTCCTTEEEEEEC-----------------SHHHH--HTCSEEEECCSCHHHHHH
T ss_pred             CCEEEEEeCCCcHHHH----HHHHHHcCCCceEEEEeC-----------------CHHHH--hhCCEEEEcCCCccHHHH
Confidence            4799999998766333    356777764 22222111                 22444  6789999999742221  


Q ss_pred             -hhhcChHHHHHHHHH-hhcCCEEEEEchHHHHHHHc
Q 015523          297 -RLQKSRILKKLLKEQ-KVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       297 -~~~~~~~l~~~l~~~-~~~~k~i~aic~g~~~La~a  331 (405)
                       .+.....+.+.|.++ ..+++||.+||.|..+|+..
T Consensus        59 ~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~   95 (218)
T d2abwa1          59 CCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   95 (218)
T ss_dssp             HTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             HHHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHh
Confidence             122233344545544 46899999999999999754

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=0.00024  Score=59.58  Aligned_cols=49  Identities=29%  Similarity=0.483  Sum_probs=36.0

Q ss_pred             cccEEEEcC-Cc--hhhhccccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           79 VFDLIALPG-GM--PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        79 ~~d~liipg-g~--~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .+|.||+|| |.  .....+ ....+.+.|+++.++++||.+||.|-. +|+..
T Consensus        42 ~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~Q-lL~~~   93 (200)
T d1k9vf_          42 LYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQ-LLFEE   93 (200)
T ss_dssp             CCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHH-TTEEE
T ss_pred             ccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEeccee-EEeee
Confidence            589999999 63  111223 234678889999999999999999644 67754

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0012  Score=56.37  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=65.0

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhc
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK  300 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~  300 (405)
                      .||+|+=+ |.--.    .+..|++.|+.++++..+.                +++++...++|+|++.+|.+.+.   +
T Consensus        40 ~~i~~~D~-G~k~~----ilr~l~~~~~~~~v~p~~~----------------~~~~i~~~~pdgivlS~GPg~P~---~   95 (228)
T d1a9xb2          40 FHVVAYDF-GAKRN----ILRMLVDRGCRLTIVPAQT----------------SAEDVLKMNPDGIFLSNGPGDPA---P   95 (228)
T ss_dssp             EEEEEEES-SCCHH----HHHHHHHTTEEEEEEETTC----------------CHHHHHTTCCSEEEECCCSBCST---T
T ss_pred             ceEEEEeC-CCcHH----hHhHHHhcCceEEEcCCCC----------------CHHHHHhcCCCEEEEeCCCCccc---c
Confidence            45666532 44433    4488999999998886654                34555446799999999975432   4


Q ss_pred             ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          301 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       301 ~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ....++.++++.+.+.||.+||-|-.+|+.+
T Consensus        96 ~~~~~~~~~~~~~~~iPILGIClG~Qlia~~  126 (228)
T d1a9xb2          96 CDYAITAIQKFLETDIPVFGICLGHQLLALA  126 (228)
T ss_dssp             CHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             chhHHHHHHHHHhCCCCEEEEEcChHHHHHH
Confidence            5578888998899999999999999999875

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.76  E-value=0.00073  Score=57.21  Aligned_cols=87  Identities=15%  Similarity=0.135  Sum_probs=51.3

Q ss_pred             CcEEEEEecCCCchhhHHHHHHHHHhcCC---EEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           17 ALNVLVPVGFGTEEMEAVIIVDVLRRAGA---QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        17 ~~ki~ill~~g~~~~e~~~~~~~l~~~~~---~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      .+|||||.++|-..+-    ...|++.++   ++..+.                   +.+++.  ++|.||||||.....
T Consensus         2 ~ikIGvl~l~G~~~~~----~~al~~lg~~~~~v~~~~-------------------~~~~l~--~~D~lIlPGgg~~~~   56 (218)
T d2abwa1           2 EITIGVLSLQGDFEPH----INHFIKLQIPSLNIIQVR-------------------NVHDLG--LCDGLVIPGGESTTV   56 (218)
T ss_dssp             CEEEEEECTTSCCHHH----HHHHHTTCCTTEEEEEEC-------------------SHHHHH--TCSEEEECCSCHHHH
T ss_pred             CCEEEEEeCCCcHHHH----HHHHHHcCCCceEEEEeC-------------------CHHHHh--hCCEEEEcCCCccHH
Confidence            3699999987655333    466777764   332221                   112333  689999999732111


Q ss_pred             ---ccccChHHHHHHHHHH-HcCCEEEEEccchHHhhhhc
Q 015523           94 ---RLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        94 ---~~~~~~~~~~~l~~~~-~~~~~i~aic~g~~~~La~a  129 (405)
                         .+.....+.+.|.+++ ..++||.+||.|-. +|++.
T Consensus        57 ~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~Q-lL~~~   95 (218)
T d2abwa1          57 RRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   95 (218)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             HHHHHHHhccchHHHHHHHHHcCCeEEEecHHHH-HHHHh
Confidence               1222233444454444 57999999999654 67764

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=96.67  E-value=0.0016  Score=57.14  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             CcCEEEEEeCC-CCcHHHHHHHHHHHHhCC--CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523          219 RMPRVLIPIAN-GSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  295 (405)
Q Consensus       219 ~~~~V~il~~~-g~~~~e~~~~~~~l~~~~--~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~  295 (405)
                      +++||+||-.- .-...|. .+...|....  +++..+.+..-.+..+.....-.--..++++....||++||.|+..+.
T Consensus        18 rpL~I~iLNlMP~k~~TE~-qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITGap~~~   96 (281)
T d2ghra1          18 RALKIAILNLMPTKQETEA-QLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVET   96 (281)
T ss_dssp             CCEEEEEECCCSSHHHHHH-HHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECCCSCTT
T ss_pred             ceeEEEEEecCCcchhhHH-HHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeCCCCCc
Confidence            56899999431 1234442 2445554443  556666665431112221111111235566666889999999986433


Q ss_pred             Hhhhc---ChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          296 ERLQK---SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       296 ~~~~~---~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      ..+.+   -.++.+++++...+++.+.+||=|..+++.+
T Consensus        97 ~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~  135 (281)
T d2ghra1          97 LSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  135 (281)
T ss_dssp             SCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHH
Confidence            22222   3688999999999999999999999987754

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.54  E-value=0.0018  Score=53.87  Aligned_cols=88  Identities=17%  Similarity=0.163  Sum_probs=55.7

Q ss_pred             CcEEEEEecC-CCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           17 ALNVLVPVGF-GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        17 ~~ki~ill~~-g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      |+||+|+=+- +|.    ..+...|++.|.+++++..+                .+..+.  .+||.+|+|||.....  
T Consensus         1 m~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~~d----------------~~~~~~--~~~dgiIl~Gg~~~~~--   56 (196)
T d2a9va1           1 MLKIYVVDNGGQWT----HREWRVLRELGVDTKIVPND----------------IDSSEL--DGLDGLVLSGGAPNID--   56 (196)
T ss_dssp             CCBEEEEEESCCTT----CHHHHHHHHTTCBCCEEETT----------------SCGGGG--TTCSEEEEEEECSCGG--
T ss_pred             CCEEEEEECCCcHH----HHHHHHHHHCCCeEEEEeCC----------------CCHHHH--hcCCcEEEeccccccc--
Confidence            5688887542 333    34467788888887776422                122333  3699999999842222  


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .....+.++++...+.++||.+||.|-. +|+.+
T Consensus        57 ~~~~~~~~l~~~~~~~~~PilGIC~G~Q-ll~~~   89 (196)
T d2a9va1          57 EELDKLGSVGKYIDDHNYPILGICVGAQ-FIALH   89 (196)
T ss_dssp             GTGGGHHHHHHHHHHCCSCEEEETHHHH-HHHHH
T ss_pred             cccchhhhHHHHHhhcCceEEEeehhhh-hhhhc
Confidence            2233445555555678999999999755 67765

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.97  E-value=0.0029  Score=52.35  Aligned_cols=78  Identities=14%  Similarity=0.043  Sum_probs=53.7

Q ss_pred             HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523          238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  317 (405)
Q Consensus       238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~  317 (405)
                      .+++.|++.|.+++++..+.-               .++++....+|.+++.||....... .+.....++.+....++|
T Consensus        16 Ni~~~l~~lG~~~~vi~~d~~---------------~~~~i~~~~~~gvilsgGp~~~~~~-~~~~~~~~i~~~~~~~~P   79 (195)
T d1qdlb_          16 NIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKR-EDIGVSLDVIKYLGKRTP   79 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSH-HHHTTHHHHHHHHTTTSC
T ss_pred             HHHHHHHhCCCeEEEEeCCCC---------------CHHHHHhhCCCccccCCCCCccccc-cccccchhhhhhhcCCCC
Confidence            346789999999988854432               2333322468999999986543332 122334456667788999


Q ss_pred             EEEEchHHHHHHHc
Q 015523          318 YGAVCSSPIVLHKH  331 (405)
Q Consensus       318 i~aic~g~~~La~a  331 (405)
                      +.+||-|..+|+.+
T Consensus        80 iLGIClG~Qll~~~   93 (195)
T d1qdlb_          80 ILGVCLGHQAIGYA   93 (195)
T ss_dssp             EEEETHHHHHHHHH
T ss_pred             EEEeehhhhhhhhc
Confidence            99999999999876

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=95.97  E-value=0.0042  Score=54.45  Aligned_cols=108  Identities=17%  Similarity=0.227  Sum_probs=62.0

Q ss_pred             CCCCcEEEEE-ecCCCchhhHHHHHHHHHhc--CCEEEEEecCCCceeEeccC--cEEecCcccCCCCCCcccEEEEcCC
Q 015523           14 PSFALNVLVP-VGFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSG--TRLVADTSISNCSHQVFDLIALPGG   88 (405)
Q Consensus        14 ~~~~~ki~il-l~~g~~~~e~~~~~~~l~~~--~~~v~~vs~~~~~~v~~~~g--~~v~~~~~~~~~~~~~~d~liipgg   88 (405)
                      ..+++||+|| ++|.-...|. -+...|...  .++++++.+..-.+..++..  -...  .+++++....||++||.|+
T Consensus        16 dirpL~I~iLNlMP~k~~TE~-qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y--~~~~~i~~~~fDglIITGa   92 (281)
T d2ghra1          16 DIRALKIAILNLMPTKQETEA-QLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFY--KTFRDIENEKFDGLIITGA   92 (281)
T ss_dssp             TSCCEEEEEECCCSSHHHHHH-HHHHHTTSSSSCEEEEEECCCC------------CCE--ECHHHHTTCCEEEEEECCC
T ss_pred             CcceeEEEEEecCCcchhhHH-HHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcc--hhHHHhhcccCCEEEEeCC
Confidence            4578999999 2333334442 134455444  35667766654211111111  1111  2344444457999999998


Q ss_pred             chhhhcccc---ChHHHHHHHHHHHcCCEEEEEccchHH
Q 015523           89 MPGSVRLRD---CEILKKITSKQAEEKRLYGAICAAPAV  124 (405)
Q Consensus        89 ~~~~~~~~~---~~~~~~~l~~~~~~~~~i~aic~g~~~  124 (405)
                      ......+.+   -+++.++++...++.+.+.+||-|...
T Consensus        93 p~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa  131 (281)
T d2ghra1          93 PVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQA  131 (281)
T ss_dssp             SCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHH
T ss_pred             CCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHH
Confidence            422222222   367888999999999999999997653

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.81  E-value=0.0058  Score=50.08  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523          238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  317 (405)
Q Consensus       238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~  317 (405)
                      .+...|++.|++++++..+.                .+++++.-.+|.++++||...    ........++++..+.++|
T Consensus        15 ~i~~~L~~~G~~~~v~~~~~----------------~~~~~~~~~~~gvilsgg~~~----~~~~~~~~~i~~~~~~~~P   74 (188)
T d1wl8a1          15 RIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGPSL----ENTGNCEKVLEHYDEFNVP   74 (188)
T ss_dssp             HHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCSCT----TCCTTHHHHHHTGGGTCSC
T ss_pred             HHHHHHHHCCCeEEEEeCCC----------------CHHHHhhhccceeeeccCccc----ccccccccccccccccccc
Confidence            35788999999999874432                244443356899999998532    2445577788888899999


Q ss_pred             EEEEchHHHHHHHc
Q 015523          318 YGAVCSSPIVLHKH  331 (405)
Q Consensus       318 i~aic~g~~~La~a  331 (405)
                      +.+||-|..+|+.+
T Consensus        75 iLGIClG~Q~l~~~   88 (188)
T d1wl8a1          75 ILGICLGHQLIAKF   88 (188)
T ss_dssp             EEEETHHHHHHHHH
T ss_pred             eeehhhhhhhhhhh
Confidence            99999999999864

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.013  Score=47.87  Aligned_cols=87  Identities=18%  Similarity=0.106  Sum_probs=56.7

Q ss_pred             cEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhh--hcc
Q 015523           18 LNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--VRL   95 (405)
Q Consensus        18 ~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~--~~~   95 (405)
                      |||+||=|-.   .-+..+...|+..|+++.+++..                   +++.  ++|.+|+||+....  ...
T Consensus         1 Mki~IiD~G~---gN~~si~~~l~~lg~~~~i~~~~-------------------~~i~--~~d~lIlpG~g~~~~~~~~   56 (195)
T d1ka9h_           1 MKALLIDYGS---GNLRSAAKALEAAGFSVAVAQDP-------------------KAHE--EADLLVLPGQGHFGQVMRA   56 (195)
T ss_dssp             CEEEEECSSC---SCHHHHHHHHHHTTCEEEEESST-------------------TSCS--SCSEEEECCCSCHHHHHHT
T ss_pred             CEEEEEeCCC---cHHHHHHHHHHHCCCeEEEECCH-------------------HHHH--HHhhhhcCCCccccchhhh
Confidence            5777664332   23344678888889998876321                   1333  58999999973111  112


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      .....+...+......++|+.++|.| ..+|+..
T Consensus        57 ~~~~~~~~~~~~~~~~g~pilGiClG-~qll~~~   89 (195)
T d1ka9h_          57 FQESGFVERVRRHLERGLPFLGICVG-MQVLYEG   89 (195)
T ss_dssp             TSSSCTHHHHHHHHHTTCCEEECTHH-HHTTSSE
T ss_pred             ccccCCcccccccccccchhhhhhhh-hheeeec
Confidence            23334567788889999999999996 5467653

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.64  E-value=0.0032  Score=52.10  Aligned_cols=77  Identities=12%  Similarity=0.047  Sum_probs=49.7

Q ss_pred             HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCE
Q 015523           35 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL  114 (405)
Q Consensus        35 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~  114 (405)
                      .+.+.|++.|.++.++..+..               +++++....+|.+++.||...+.. ..+......+.+...+++|
T Consensus        16 Ni~~~l~~lG~~~~vi~~d~~---------------~~~~i~~~~~~gvilsgGp~~~~~-~~~~~~~~~i~~~~~~~~P   79 (195)
T d1qdlb_          16 NIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEK-REDIGVSLDVIKYLGKRTP   79 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTS-HHHHTTHHHHHHHHTTTSC
T ss_pred             HHHHHHHhCCCeEEEEeCCCC---------------CHHHHHhhCCCccccCCCCCcccc-ccccccchhhhhhhcCCCC
Confidence            346778999999988865432               111222125799999998432222 1222344567778889999


Q ss_pred             EEEEccchHHhhhh
Q 015523          115 YGAICAAPAVTLLP  128 (405)
Q Consensus       115 i~aic~g~~~~La~  128 (405)
                      |.+||-|-. +|+.
T Consensus        80 iLGIClG~Q-ll~~   92 (195)
T d1qdlb_          80 ILGVCLGHQ-AIGY   92 (195)
T ss_dssp             EEEETHHHH-HHHH
T ss_pred             EEEeehhhh-hhhh
Confidence            999999766 5665

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=95.45  E-value=0.024  Score=46.16  Aligned_cols=87  Identities=17%  Similarity=0.137  Sum_probs=58.3

Q ss_pred             CEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHh--h
Q 015523          221 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--L  298 (405)
Q Consensus       221 ~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~--~  298 (405)
                      |||+|+=|---+..   .+...|++.|+++++++.                   .+++  .++|.+|+|||-.....  .
T Consensus         1 Mki~IiD~G~gN~~---si~~~l~~lg~~~~i~~~-------------------~~~i--~~~d~lIlpG~g~~~~~~~~   56 (195)
T d1ka9h_           1 MKALLIDYGSGNLR---SAAKALEAAGFSVAVAQD-------------------PKAH--EEADLLVLPGQGHFGQVMRA   56 (195)
T ss_dssp             CEEEEECSSCSCHH---HHHHHHHHTTCEEEEESS-------------------TTSC--SSCSEEEECCCSCHHHHHHT
T ss_pred             CEEEEEeCCCcHHH---HHHHHHHHCCCeEEEECC-------------------HHHH--HHHhhhhcCCCccccchhhh
Confidence            57777744322333   366778888998887521                   1333  56899999997422221  2


Q ss_pred             hcChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          299 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       299 ~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                      .....+...+.+....++++.++|.|..+|+..
T Consensus        57 ~~~~~~~~~~~~~~~~g~pilGiClG~qll~~~   89 (195)
T d1ka9h_          57 FQESGFVERVRRHLERGLPFLGICVGMQVLYEG   89 (195)
T ss_dssp             TSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             ccccCCcccccccccccchhhhhhhhhheeeec
Confidence            233345567777888999999999999999854

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.32  E-value=0.01  Score=48.48  Aligned_cols=73  Identities=15%  Similarity=0.118  Sum_probs=52.0

Q ss_pred             HHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCE
Q 015523           35 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL  114 (405)
Q Consensus        35 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~  114 (405)
                      .+...|++.|++++++..+..                +++...-.+|.++++||. ..   .......+++++..+.++|
T Consensus        15 ~i~~~L~~~G~~~~v~~~~~~----------------~~~~~~~~~~gvilsgg~-~~---~~~~~~~~~i~~~~~~~~P   74 (188)
T d1wl8a1          15 RIWRTLRYLGVETKIIPNTTP----------------LEEIKAMNPKGIIFSGGP-SL---ENTGNCEKVLEHYDEFNVP   74 (188)
T ss_dssp             HHHHHHHHTTCEEEEEETTCC----------------HHHHHHTCCSEEEECCCS-CT---TCCTTHHHHHHTGGGTCSC
T ss_pred             HHHHHHHHCCCeEEEEeCCCC----------------HHHHhhhccceeeeccCc-cc---ccccccccccccccccccc
Confidence            467889999999998854432                122222258999999983 22   2345677788889999999


Q ss_pred             EEEEccchHHhhhh
Q 015523          115 YGAICAAPAVTLLP  128 (405)
Q Consensus       115 i~aic~g~~~~La~  128 (405)
                      +.+||-|-. +|+.
T Consensus        75 iLGIClG~Q-~l~~   87 (188)
T d1wl8a1          75 ILGICLGHQ-LIAK   87 (188)
T ss_dssp             EEEETHHHH-HHHH
T ss_pred             eeehhhhhh-hhhh
Confidence            999999755 5765

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=95.18  E-value=0.0058  Score=50.42  Aligned_cols=78  Identities=15%  Similarity=0.114  Sum_probs=53.1

Q ss_pred             HHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhhcChHHHHHHHHHhhcCCE
Q 015523          238 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI  317 (405)
Q Consensus       238 ~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~~~~~l~~~l~~~~~~~k~  317 (405)
                      .+++.|++.|++++++..+..            .+...+++...++|++++.||.+.+..    .....++++...+++|
T Consensus        15 ni~~~l~~lG~~~~v~~~~~~------------~~~~~~~l~~~~~~~iils~Gpg~~~~----~~~~~~i~~~l~~~iP   78 (192)
T d1i7qb_          15 NLVDQLRASGHQVVIYRNQIG------------AEVIIERLQHMEQPVLMLSPGPGTPSE----AGCMPELLQRLRGQLP   78 (192)
T ss_dssp             HHHHHHHHTTCEEEEEETTSC------------HHHHHHHHHHCSSEEEEECCCSSCGGG----STTHHHHHHHHBTTBC
T ss_pred             HHHHHHHHCCCeEEEEeCCCc------------ccccHHHHHhcCCCeEEecCccccccc----cccchhhHHhhhcCcc
Confidence            467789999999998865542            111122222246899999777644332    2223456777889999


Q ss_pred             EEEEchHHHHHHHc
Q 015523          318 YGAVCSSPIVLHKH  331 (405)
Q Consensus       318 i~aic~g~~~La~a  331 (405)
                      |.+||-|..+|+.+
T Consensus        79 iLGIClG~Q~la~~   92 (192)
T d1i7qb_          79 IIGICLGHQAIVEA   92 (192)
T ss_dssp             EEEETHHHHHHHHH
T ss_pred             EEeeeHHHHHHHHH
Confidence            99999999999986

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.022  Score=48.16  Aligned_cols=73  Identities=21%  Similarity=0.223  Sum_probs=53.5

Q ss_pred             HHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEE
Q 015523           36 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLY  115 (405)
Q Consensus        36 ~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i  115 (405)
                      .+..|++.++.++++..+..                .+++...+||+||+.+|. +.  ..+.....+.++++.+.+.||
T Consensus        53 ilr~l~~~~~~~~v~p~~~~----------------~~~i~~~~pdgivlS~GP-g~--P~~~~~~~~~~~~~~~~~iPI  113 (228)
T d1a9xb2          53 ILRMLVDRGCRLTIVPAQTS----------------AEDVLKMNPDGIFLSNGP-GD--PAPCDYAITAIQKFLETDIPV  113 (228)
T ss_dssp             HHHHHHHTTEEEEEEETTCC----------------HHHHHTTCCSEEEECCCS-BC--STTCHHHHHHHHHHTTSCCCE
T ss_pred             hHhHHHhcCceEEEcCCCCC----------------HHHHHhcCCCEEEEeCCC-Cc--cccchhHHHHHHHHHhCCCCE
Confidence            45888899999999876542                223333368999999993 32  224556788899999999999


Q ss_pred             EEEccchHHhhhh
Q 015523          116 GAICAAPAVTLLP  128 (405)
Q Consensus       116 ~aic~g~~~~La~  128 (405)
                      .+||-|-. +|+.
T Consensus       114 LGIClG~Q-lia~  125 (228)
T d1a9xb2         114 FGICLGHQ-LLAL  125 (228)
T ss_dssp             EEETHHHH-HHHH
T ss_pred             EEEEcChH-HHHH
Confidence            99999766 5664

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.012  Score=48.77  Aligned_cols=89  Identities=18%  Similarity=0.070  Sum_probs=58.1

Q ss_pred             cCEEEEEeCCCCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchHhhh
Q 015523          220 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ  299 (405)
Q Consensus       220 ~~~V~il~~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~~~~  299 (405)
                      .+||+|+=| |....  -.+...|+..|+.+++++.+..                .++.....+|.+++.||...+... 
T Consensus         5 ~~kI~IiD~-G~~~~--~~I~r~lr~lg~~~~I~~~d~~----------------~~~~~~~~~~giils~gp~~~~~~-   64 (205)
T d1gpma2           5 KHRILILDF-GSQYT--QLVARRVRELGVYCELWAWDVT----------------EAQIRDFNPSGIILSGGPESTTEE-   64 (205)
T ss_dssp             SSEEEEEEC-SCTTH--HHHHHHHHHTTCEEEEEESCCC----------------HHHHHHHCCSEEEECCCSSCTTST-
T ss_pred             cCeEEEEEC-CchHH--HHHHHHHHHCCCEEEEECCCCC----------------HHHHhhcCCCeEEecCCCCccchh-
Confidence            468888854 32211  2245778889999988765431                122222467999999986443221 


Q ss_pred             cChHHHHHHHHHhhcCCEEEEEchHHHHHHHc
Q 015523          300 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       300 ~~~~l~~~l~~~~~~~k~i~aic~g~~~La~a  331 (405)
                         .....+.+....++||.+||-|..+|+.+
T Consensus        65 ---~~~~~~~~~~~~~~PiLGIClG~Qlla~~   93 (205)
T d1gpma2          65 ---NSPRAPQYVFEAGVPVFGVCYGMQTMAMQ   93 (205)
T ss_dssp             ---TCCCCCGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             ---hhhhHHHHHHhCCCCEEEeccchhhhhhh
Confidence               22234455677899999999999999875

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=93.90  E-value=0.014  Score=47.92  Aligned_cols=90  Identities=16%  Similarity=0.142  Sum_probs=54.6

Q ss_pred             EEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhccccChHH
Q 015523           22 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL  101 (405)
Q Consensus        22 ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~  101 (405)
                      ||+.|+++... ..+.+.|++.|+++.++..+...            +...+.+...++|++++.||. +...  + ...
T Consensus         3 iliiD~~DSFt-~ni~~~l~~lG~~~~v~~~~~~~------------~~~~~~l~~~~~~~iils~Gp-g~~~--~-~~~   65 (192)
T d1i7qb_           3 ILLLDNVDSFT-YNLVDQLRASGHQVVIYRNQIGA------------EVIIERLQHMEQPVLMLSPGP-GTPS--E-AGC   65 (192)
T ss_dssp             EEEEECSCSSH-HHHHHHHHHTTCEEEEEETTSCH------------HHHHHHHHHCSSEEEEECCCS-SCGG--G-STT
T ss_pred             EEEEECCCcHH-HHHHHHHHHCCCeEEEEeCCCcc------------cccHHHHHhcCCCeEEecCcc-cccc--c-ccc
Confidence            44555544322 24577899999999998755430            001111222258999997773 3222  1 222


Q ss_pred             HHHHHHHHHcCCEEEEEccchHHhhhhc
Q 015523          102 KKITSKQAEEKRLYGAICAAPAVTLLPW  129 (405)
Q Consensus       102 ~~~l~~~~~~~~~i~aic~g~~~~La~a  129 (405)
                      ..++++..++++||.+||-|-. +|+.+
T Consensus        66 ~~~i~~~l~~~iPiLGIClG~Q-~la~~   92 (192)
T d1i7qb_          66 MPELLQRLRGQLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             HHHHHHHHBTTBCEEEETHHHH-HHHHH
T ss_pred             chhhHHhhhcCccEEeeeHHHH-HHHHH
Confidence            3457778889999999999766 57653

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.83  E-value=0.041  Score=46.64  Aligned_cols=92  Identities=15%  Similarity=0.149  Sum_probs=54.6

Q ss_pred             CEEEEEe-CCCCcHHHHHHHHHHHHhC----CCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523          221 PRVLIPI-ANGSEEIEIVTIVDILRRA----KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  295 (405)
Q Consensus       221 ~~V~il~-~~g~~~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~  295 (405)
                      .+|+|+- |....+. ..++.+.|..+    +.++++...+.. .+.        .+...+.+  .++|.++||||.+. 
T Consensus         4 v~IaiVGKY~~l~Da-Y~Si~eAL~hA~~~~~~~v~i~wi~s~-~l~--------~~~~~~~L--~~~dGIlvPGGFG~-   70 (250)
T d1vcoa1           4 VKIAIAGKYVKMPDA-YLSLLEALRHAGIKNRARVEVKWVDAE-SLE--------AADLEEAF--RDVSGILVPGGFGV-   70 (250)
T ss_dssp             EEEEEEESCC---CT-THHHHHHHHHHHHHTTEEEEEEEEEGG-GC----------CCHHHHT--TTCSCEEECCCCSS-
T ss_pred             EEEEEEeCCCCCchH-HHHHHHHHHHhHHhcCCeEEEEEEcch-hcc--------hhhHHHHH--hcCCeEEecCCCCc-
Confidence            4566653 2222221 24566666655    455555555443 221        11111223  67899999999842 


Q ss_pred             HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523          296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL  328 (405)
Q Consensus       296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~L  328 (405)
                         +.-+--+..++.+..++.|..+||-|..+.
T Consensus        71 ---rG~eGki~ai~yARen~iPfLGIClGmQ~a  100 (250)
T d1vcoa1          71 ---RGIEGKVRAAQYARERKIPYLGICLGLQIA  100 (250)
T ss_dssp             ---TTHHHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             ---cchHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence               233456667888889999999999999965

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.76  E-value=0.089  Score=44.64  Aligned_cols=91  Identities=12%  Similarity=0.167  Sum_probs=57.6

Q ss_pred             CEEEEEe-CCCCcHHHHHHHHHHHHhCC----CeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccch
Q 015523          221 PRVLIPI-ANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA  295 (405)
Q Consensus       221 ~~V~il~-~~g~~~~e~~~~~~~l~~~~----~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~  295 (405)
                      .+|+++- |....+. +..+.+.|..++    .++++...+.. .+..         ...+.+  .++|.|+||||++. 
T Consensus         4 v~Ia~vGKY~~l~Da-Y~Sv~eaL~ha~~~~~~~v~i~wi~s~-~~e~---------~~~~~L--~~~dGIlvPGGFG~-   69 (258)
T d1s1ma1           4 VTIGMVGKYIELPDA-YKSVIEALKHGGLKNRVSVNIKLIDSQ-DVET---------RGVEIL--KGLDAILVPGGFGY-   69 (258)
T ss_dssp             EEEEEEESSCSSGGG-GHHHHHHHHHHHHHHTEEEEEEEEEHH-HHHH---------HCTTTT--TTCSEEEECCCCSS-
T ss_pred             eEEEEEeCcCCCchh-HHhHHHHHHHhHHhcCCeEEEEEEccc-cccc---------cccccc--cccccEEeecccCc-
Confidence            3555554 3333332 355667777653    55555554432 1111         112333  77999999999842 


Q ss_pred             HhhhcChHHHHHHHHHhhcCCEEEEEchHHHHH
Q 015523          296 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL  328 (405)
Q Consensus       296 ~~~~~~~~l~~~l~~~~~~~k~i~aic~g~~~L  328 (405)
                         +.-+--+..++.+..++.|..+||-|..++
T Consensus        70 ---RG~eGki~ai~yARen~iPfLGIClGmQ~a   99 (258)
T d1s1ma1          70 ---RGVEGMITTARFARENNIPYLGICLGMQVA   99 (258)
T ss_dssp             ---TTHHHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence               344567778888899999999999999866

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.04  Score=45.44  Aligned_cols=89  Identities=13%  Similarity=0.054  Sum_probs=54.9

Q ss_pred             CCcEEEEEecCCCchhhHHHHHHHHHhcCCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhhcc
Q 015523           16 FALNVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL   95 (405)
Q Consensus        16 ~~~ki~ill~~g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~~~   95 (405)
                      ..+||+||=|- .  .-...+...++..|+++++++.+..  .           ..+..   ..+|.+++.||...+.. 
T Consensus         4 ~~~kI~IiD~G-~--~~~~~I~r~lr~lg~~~~I~~~d~~--~-----------~~~~~---~~~~giils~gp~~~~~-   63 (205)
T d1gpma2           4 HKHRILILDFG-S--QYTQLVARRVRELGVYCELWAWDVT--E-----------AQIRD---FNPSGIILSGGPESTTE-   63 (205)
T ss_dssp             TSSEEEEEECS-C--TTHHHHHHHHHHTTCEEEEEESCCC--H-----------HHHHH---HCCSEEEECCCSSCTTS-
T ss_pred             ccCeEEEEECC-c--hHHHHHHHHHHHCCCEEEEECCCCC--H-----------HHHhh---cCCCeEEecCCCCccch-
Confidence            45688888542 1  1112356788889999998865432  0           11112   24799999998422221 


Q ss_pred             ccChHHHHHHHHHHHcCCEEEEEccchHHhhhh
Q 015523           96 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP  128 (405)
Q Consensus        96 ~~~~~~~~~l~~~~~~~~~i~aic~g~~~~La~  128 (405)
                         ......+.+.++.++||.+||-|-. +|+.
T Consensus        64 ---~~~~~~~~~~~~~~~PiLGIClG~Q-lla~   92 (205)
T d1gpma2          64 ---ENSPRAPQYVFEAGVPVFGVCYGMQ-TMAM   92 (205)
T ss_dssp             ---TTCCCCCGGGGTSSSCEEEETHHHH-HHHH
T ss_pred             ---hhhhhHHHHHHhCCCCEEEeccchh-hhhh
Confidence               1122345556778999999999766 6775

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.20  E-value=0.1  Score=43.75  Aligned_cols=92  Identities=12%  Similarity=0.079  Sum_probs=61.8

Q ss_pred             cCEEEEEeCC---CCcHHHHHHHHHHHHhCCCeEEEEeecCCceeecCCCcEEeeCCCccCcCCCCccEEEEcCCccchH
Q 015523          220 MPRVLIPIAN---GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE  296 (405)
Q Consensus       220 ~~~V~il~~~---g~~~~e~~~~~~~l~~~~~~v~~vs~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpgG~~~~~  296 (405)
                      .+||+++-+=   .-...=.....+.|...++++..+.....               ..+.+  .+.|+|++.||.  +.
T Consensus        31 ~~~i~~IPtAs~~~~~~~y~~~~~~~~~~l~~~v~~l~~~~~---------------~~~~l--~~ad~I~v~GGn--~~   91 (229)
T d1fyea_          31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVAD---------------PLAAI--EKAEIIIVGGGN--TF   91 (229)
T ss_dssp             CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEEGGGSSC---------------HHHHH--HHCSEEEECCSC--HH
T ss_pred             CCeEEEECCCCCCCchhHHHHHHHHHhhhcCceeEEeccccc---------------HHHHH--hhCCEEEEcCCC--HH
Confidence            3577777431   11111134456677778888776643321               12333  567999999994  44


Q ss_pred             h---hhcChHHHHHHHHHhhcCCEEEEEchHHHHHHH
Q 015523          297 R---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK  330 (405)
Q Consensus       297 ~---~~~~~~l~~~l~~~~~~~k~i~aic~g~~~La~  330 (405)
                      .   ......+.+.|++.+++|+++++..+|+.++..
T Consensus        92 ~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v~~~  128 (229)
T d1fyea_          92 QLLKESRERGLLAPMADRVKRGALYIGWSAGANLACP  128 (229)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSS
T ss_pred             HHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHhhcCc
Confidence            3   345567888999999999999999999998863

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.38  E-value=0.23  Score=42.04  Aligned_cols=88  Identities=18%  Similarity=0.252  Sum_probs=53.4

Q ss_pred             EEEEEe-cCCCchhhHHHHHHHHHhc----CCEEEEEecCCCceeEeccCcEEecCcccCCCCCCcccEEEEcCCchhhh
Q 015523           19 NVLVPV-GFGTEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV   93 (405)
Q Consensus        19 ki~ill-~~g~~~~e~~~~~~~l~~~----~~~v~~vs~~~~~~v~~~~g~~v~~~~~~~~~~~~~~d~liipgg~~~~~   93 (405)
                      +|+++- |-+.. ..+..+.+.|.-+    +.++++...+.. .+..         ...+.+  .++|.++||||++   
T Consensus         5 ~Ia~vGKY~~l~-DaY~Sv~eaL~ha~~~~~~~v~i~wi~s~-~~e~---------~~~~~L--~~~dGIlvPGGFG---   68 (258)
T d1s1ma1           5 TIGMVGKYIELP-DAYKSVIEALKHGGLKNRVSVNIKLIDSQ-DVET---------RGVEIL--KGLDAILVPGGFG---   68 (258)
T ss_dssp             EEEEEESSCSSG-GGGHHHHHHHHHHHHHHTEEEEEEEEEHH-HHHH---------HCTTTT--TTCSEEEECCCCS---
T ss_pred             EEEEEeCcCCCc-hhHHhHHHHHHHhHHhcCCeEEEEEEccc-cccc---------cccccc--cccccEEeecccC---
Confidence            566664 22222 2345556666533    556666554432 1211         112223  3799999999953   


Q ss_pred             ccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523           94 RLRDCEILKKITSKQAEEKRLYGAICAAPA  123 (405)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~i~aic~g~~  123 (405)
                       .+..+.-+..++-+.+++.|+.+||-|-.
T Consensus        69 -~RG~eGki~ai~yARen~iPfLGIClGmQ   97 (258)
T d1s1ma1          69 -YRGVEGMITTARFARENNIPYLGICLGMQ   97 (258)
T ss_dssp             -STTHHHHHHHHHHHHHTTCCEEEETHHHH
T ss_pred             -cCCHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence             23445677789999999999999999744

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.36  Score=41.73  Aligned_cols=51  Identities=18%  Similarity=0.117  Sum_probs=31.7

Q ss_pred             CCccEEEEcCCccchHh---hhcChHHHHHHHHHh--hcCCEEEEEchHHHHHHHc
Q 015523          281 SVYDLIILPGGVAGAER---LQKSRILKKLLKEQK--VAGRIYGAVCSSPIVLHKH  331 (405)
Q Consensus       281 ~~~D~livpgG~~~~~~---~~~~~~l~~~l~~~~--~~~k~i~aic~g~~~La~a  331 (405)
                      ...|.|++|||..+...   ....+.+.++.....  .++.||.+||-|..+|+.+
T Consensus        58 ~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~  113 (288)
T d1l9xa_          58 KSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  113 (288)
T ss_dssp             HHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             hhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHH
Confidence            34699999999532211   112233444444333  4456999999999988643

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.05  E-value=0.31  Score=40.98  Aligned_cols=41  Identities=27%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             cccEEEEcCCchhhhccccChHHHHHHHHHHHcCCEEEEEccchH
Q 015523           79 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPA  123 (405)
Q Consensus        79 ~~d~liipgg~~~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~  123 (405)
                      ++|.++||||++ .   +.-+.-+..++-+.+++.|+.+||-|-.
T Consensus        58 ~~dGIlvPGGFG-~---rG~eGki~ai~yARen~iPfLGIClGmQ   98 (250)
T d1vcoa1          58 DVSGILVPGGFG-V---RGIEGKVRAAQYARERKIPYLGICLGLQ   98 (250)
T ss_dssp             TCSCEEECCCCS-S---TTHHHHHHHHHHHHHTTCCEEEETHHHH
T ss_pred             cCCeEEecCCCC-c---cchHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            689999999953 2   2334566678888899999999999744