Citrus Sinensis ID: 015533

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
MFNKIIKRGHRKGSKSVSNETFVTVNHSSVANFESQPPILSPLPQPSPIIPKYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIYMSCYCSAVSLAGLSCTHVTL
cHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHccccccc
cHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHccccccEcc
MFNKIikrghrkgsksvsnETFVTVNHssvanfesqppilsplpqpspiipkyeiqnlpkfndvpsseklNLFIKKTQLccvlcdfndpskmtreKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIfralppafhentgslpdvgepdeedawlepawphLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKlldlfdteDHREREYLKMVLHRIYGrfmshrpfiraGINNVFYRFIFETERHNGIGELLEILGSIingfalpmkEEHKLLLVRAmlplhkpkcvALYHQQLTYCVVQFVEKDYELADTVIRGLLrywpvtncqkEVLFLGELEevldvthpaefqqcmgplfrqigrcltsphfqVHIIVTSLIYMSCYCSAvslaglscthvtl
mfnkiikrghrkgsksvsneTFVTVNHSSVANFESQPPILSPLPQPSPIIPKYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIYMSCYCSAVSLAGLSCTHVTL
MFNKIIKRGHRKGSKSVSNETFVTVNHSSVANFEsqppilsplpqpspiipKYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHngigelleilgsiingFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKevlflgeleevldvTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIYMSCYCSAVSLAGLSCTHVTL
***************************************************KYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFN******************LVKFI**************LMRMISINIFRALPPAFH***************DAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIYMSCYCSAVSLAGLSCTH***
*FNK************************************************************PSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAF********DVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIYMSCYCSAVSLAGLSCTHVTL
*****************SNETFVTVNHSSVANFESQPPILSPLPQPSPIIPKYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIYMSCYCSAVSLAGLSCTHVTL
******************************************************IQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPA***********G*PD*EDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIYMSCYCSAVSLAGLSCTHVTL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFNKIIKRGHRKGSKSVSNETFVTVNHSSVANFESQPPILSPLPQPSPIIPKYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHIIVTSLIYMSCYCSAVSLAGLSCTHVTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query405 2.2.26 [Sep-21-2011]
O04376499 Serine/threonine protein yes no 0.918 0.745 0.640 1e-136
O04375495 Serine/threonine protein no no 0.916 0.749 0.608 1e-134
Q8RW96522 Serine/threonine protein no no 0.787 0.611 0.669 1e-132
Q9SV41497 Serine/threonine protein no no 0.928 0.756 0.602 1e-128
Q9LVE2546 Serine/threonine protein no no 0.787 0.584 0.657 1e-127
Q8LF36492 Serine/threonine protein no no 0.782 0.644 0.633 1e-120
Q9LU89510 Serine/threonine protein no no 0.787 0.625 0.632 1e-120
Q93YV6500 Serine/threonine protein no no 0.782 0.634 0.546 1e-108
Q9ZQY6477 Serine/threonine protein no no 0.780 0.662 0.588 1e-107
Q28653 586 Serine/threonine-protein yes no 0.787 0.544 0.543 1e-102
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function desciption
 Score =  485 bits (1249), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 251/392 (64%), Positives = 295/392 (75%), Gaps = 20/392 (5%)

Query: 1   MFNKIIKRGHRKGSKSVSNE----------------TFVTVNHSSVANFESQPPILSPLP 44
           MF KI+K GHRK SKS +NE                + V V+H+S     +  P      
Sbjct: 1   MFKKIMKGGHRKPSKSEANEPSSYGIGLPDNRSGPGSNVVVSHASRGALVNSSPSPVTAT 60

Query: 45  QPSPIIPKYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQ 104
            P P +    ++ LP F DVP SE+  LF++K Q CC L DF D  K  R+KEIK + L 
Sbjct: 61  PPPPPLGS--VEPLPLFRDVPVSERQTLFLRKLQNCCFLFDFTDTIKNARDKEIKRQTLL 118

Query: 105 ELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPA 164
           ELV FIQS SSKI+E  QE +++MIS+NIFR+LPPA HENTG  P   E +E     EP+
Sbjct: 119 ELVDFIQSGSSKISESCQEEMIKMISVNIFRSLPPASHENTGQEPADPEEEEPYL--EPS 176

Query: 165 WPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIY 224
           WPHLQLVYE+LLRY+VS   D K+AKRYIDH+FVLKLLDLFD+ED REREYLK +LHRIY
Sbjct: 177 WPHLQLVYELLLRYVVSTDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIY 236

Query: 225 GRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRA 284
           G+FM HRPFIR  INN+FYRFI+ETERH+GIGELLEILGSIINGFALPMKEEHKL L+R 
Sbjct: 237 GKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLIRV 296

Query: 285 MLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEE 344
           ++PLHKPK + +YHQQL+YC+VQFVEKDY+LADTVIRGLL+YWPVTNC KE LFLGELEE
Sbjct: 297 LIPLHKPKPIVVYHQQLSYCIVQFVEKDYKLADTVIRGLLKYWPVTNCSKENLFLGELEE 356

Query: 345 VLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQV 376
           VL+ T P EFQ+CM PLF+QIGRCLTS HFQV
Sbjct: 357 VLEATQPVEFQRCMVPLFQQIGRCLTSSHFQV 388
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function description
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function description
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
225448950502 PREDICTED: serine/threonine protein phos 0.923 0.745 0.622 1e-138
449451060499 PREDICTED: serine/threonine protein phos 0.923 0.749 0.646 1e-138
449482406394 PREDICTED: serine/threonine protein phos 0.923 0.949 0.646 1e-138
255556860494 protein phosphatase 2a, regulatory subun 0.906 0.742 0.637 1e-138
224140255493 predicted protein [Populus trichocarpa] 0.916 0.752 0.649 1e-137
356548341483 PREDICTED: serine/threonine protein phos 0.903 0.757 0.641 1e-136
356533265486 PREDICTED: serine/threonine protein phos 0.896 0.746 0.634 1e-136
297829520500 hypothetical protein ARALYDRAFT_478311 [ 0.918 0.744 0.642 1e-135
15232782499 serine/threonine protein phosphatase 2A 0.918 0.745 0.640 1e-134
356554460 536 PREDICTED: serine/threonine protein phos 0.817 0.617 0.657 1e-134
>gi|225448950|ref|XP_002268726.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform [Vitis vinifera] Back     alignment and taxonomy information
 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/397 (62%), Positives = 298/397 (75%), Gaps = 23/397 (5%)

Query: 1   MFNKIIKRGHRKGSKSVSNE-------------------TFVTVNHSSVANFESQPP--I 39
           MFNKIIKRG+RK SK+ +NE                   + V VNH+S     S     +
Sbjct: 1   MFNKIIKRGNRKVSKAEANEDALYGYGTPGNRNTGSIPTSNVVVNHASRTMVSSSVANSV 60

Query: 40  LSPLPQPSPIIPKYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIK 99
              +           I+ LP   D+P SE+ N+F +K Q+CC L DF+DP    REKEIK
Sbjct: 61  QQAVAVAVAPPSSAVIEPLPLLRDIPVSERPNMFSRKIQICCFLFDFSDPMNSLREKEIK 120

Query: 100 HRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDA 159
            + L ELV F+QS + K++E MQE L+ MIS+NIFR LPPA HENTGS  +  E +E++ 
Sbjct: 121 RQILVELVDFVQSGTGKLSEIMQEELIGMISVNIFRCLPPASHENTGS--ENLELEEDET 178

Query: 160 WLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMV 219
            L+P+WPHLQ+VYE+LLRY+VS+  D K+AKRYIDHTF LKLLDLF +EDHREREYLK +
Sbjct: 179 SLDPSWPHLQIVYELLLRYVVSSETDTKVAKRYIDHTFGLKLLDLFASEDHREREYLKTI 238

Query: 220 LHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKL 279
           LHRIYG+FM HRPFIR  INN+FYRFIFET+RH+GIGELLEILGSIINGFALPMKEEHKL
Sbjct: 239 LHRIYGKFMVHRPFIRKAINNIFYRFIFETQRHSGIGELLEILGSIINGFALPMKEEHKL 298

Query: 280 LLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFL 339
            LVRA++PLHKPK +++YHQQL+YC+ QF+EKDY+LAD VIRGLL+YWPV NCQKE+LFL
Sbjct: 299 FLVRALIPLHKPKSISMYHQQLSYCITQFIEKDYKLADIVIRGLLKYWPVINCQKEILFL 358

Query: 340 GELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQV 376
           GELEEVL+ T  AEFQ+CM PLFRQIGRCL SP FQV
Sbjct: 359 GELEEVLEGTQSAEFQRCMVPLFRQIGRCLNSPQFQV 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449451060|ref|XP_004143280.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449482406|ref|XP_004156272.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255556860|ref|XP_002519463.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223541326|gb|EEF42877.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224140255|ref|XP_002323499.1| predicted protein [Populus trichocarpa] gi|222868129|gb|EEF05260.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548341|ref|XP_003542561.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|356533265|ref|XP_003535186.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|297829520|ref|XP_002882642.1| hypothetical protein ARALYDRAFT_478311 [Arabidopsis lyrata subsp. lyrata] gi|297328482|gb|EFH58901.1| hypothetical protein ARALYDRAFT_478311 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15232782|ref|NP_187599.1| serine/threonine protein phosphatase 2A regulatory subunit B prime beta isoform [Arabidopsis thaliana] gi|75097015|sp|O04376.1|2A5B_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Short=AtB' beta; Short=PP2A, B' subunit, beta isoform gi|6681331|gb|AAF23248.1|AC015985_6 B' regulatory subunit of PP2A (AtB'beta) [Arabidopsis thaliana] gi|2160692|gb|AAB58901.1| B' regulatory subunit of PP2A [Arabidopsis thaliana] gi|18176455|gb|AAL60047.1| putative B' regulatory subunit of PP2A AtB'beta [Arabidopsis thaliana] gi|21280992|gb|AAM44900.1| putative B' regulatory subunit of PP2A AtB'beta [Arabidopsis thaliana] gi|332641304|gb|AEE74825.1| serine/threonine protein phosphatase 2A regulatory subunit B prime beta isoform [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356554460|ref|XP_003545564.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.918 0.745 0.571 4.5e-114
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.920 0.753 0.534 2.1e-107
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.795 0.647 0.580 1.1e-105
TAIR|locus:505006470522 ATB' GAMMA [Arabidopsis thalia 0.782 0.607 0.601 6e-103
TAIR|locus:2089905546 AT3G21650 [Arabidopsis thalian 0.782 0.580 0.579 1.7e-100
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.782 0.644 0.557 3.3e-95
TAIR|locus:2179499500 AT5G25510 [Arabidopsis thalian 0.782 0.634 0.487 4.3e-86
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.780 0.662 0.529 8.9e-86
TAIR|locus:2092175529 AT3G26020 [Arabidopsis thalian 0.545 0.417 0.529 1.1e-80
FB|FBgn0042693 984 PP2A-B' "PP2A-B'" [Drosophila 0.777 0.320 0.479 9.7e-80
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 224/392 (57%), Positives = 267/392 (68%)

Query:     1 MFNKIIKRGHRKGSKSVSNE----------------TFVTVNHSSVANFEXXXXXXXXXX 44
             MF KI+K GHRK SKS +NE                + V V+H+S               
Sbjct:     1 MFKKIMKGGHRKPSKSEANEPSSYGIGLPDNRSGPGSNVVVSHASRGALVNSSPSPVTAT 60

Query:    45 XXXXXXXKYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQ 104
                       ++ LP F DVP SE+  LF++K Q CC L DF D  K  R+KEIK + L 
Sbjct:    61 PPPPPLGS--VEPLPLFRDVPVSERQTLFLRKLQNCCFLFDFTDTIKNARDKEIKRQTLL 118

Query:   105 ELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPA 164
             ELV FIQS SSKI+E  QE +++MIS+NIFR+LPPA HENTG  P   +P+EE+ +LEP+
Sbjct:   119 ELVDFIQSGSSKISESCQEEMIKMISVNIFRSLPPASHENTGQEP--ADPEEEEPYLEPS 176

Query:   165 WPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIY 224
             WPHLQLVYE+LLRY+VS   D K+AKRYIDH+FVLKLLDLFD+ED REREYLK +LHRIY
Sbjct:   177 WPHLQLVYELLLRYVVSTDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIY 236

Query:   225 GRFMSHRPFIRAGINNVFYRFIFETERHXXXXXXXXXXXXXXXXFALPMKEEHKLLLVRA 284
             G+FM HRPFIR  INN+FYRFI+ETERH                FALPMKEEHKL L+R 
Sbjct:   237 GKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLIRV 296

Query:   285 MLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKXXXXXXXXXX 344
             ++PLHKPK + +YHQQL+YC+VQFVEKDY+LADTVIRGLL+YWPVTNC K          
Sbjct:   297 LIPLHKPKPIVVYHQQLSYCIVQFVEKDYKLADTVIRGLLKYWPVTNCSKENLFLGELEE 356

Query:   345 XXXXTHPAEFQQCMGPLFRQIGRCLTSPHFQV 376
                 T P EFQ+CM PLF+QIGRCLTS HFQV
Sbjct:   357 VLEATQPVEFQRCMVPLFQQIGRCLTSSHFQV 388
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092175 AT3G26020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O043762A5B_ARATHNo assigned EC number0.64030.91850.7454yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 1e-149
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 2e-04
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  427 bits (1100), Expect = e-149
 Identities = 179/318 (56%), Positives = 237/318 (74%), Gaps = 11/318 (3%)

Query: 61  FNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQELVKFIQSDS--SKIN 118
             DVPS E  +LF+KK + CCV+CDF+DP+   + KEIK + L+E+V ++ +     K+ 
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 119 EQMQENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRY 178
           E + + + +MI++NIFR LPP         P + +PD+++ +LEP+WPHL LVYEILLR+
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPPI------PNPSL-DPDDDEPFLEPSWPHLSLVYEILLRF 113

Query: 179 IVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGI 238
           I S        K+YIDH+F+ +LLDLFD+ D RER+ LK  LHRIYG+F   RPFIR  I
Sbjct: 114 IESP--PFDPLKKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAI 171

Query: 239 NNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYH 298
           N++ YRFI+ETE+ NG+ ELLEILGSIINGFALP+KEEHK  L++ +LPLHK K ++LYH
Sbjct: 172 NSILYRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYH 231

Query: 299 QQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCM 358
           QQL+YCVVQF+EKD  LA+ VIRGLL++WPVTN  KEVLFL ELEE+L+   P EFQ+ M
Sbjct: 232 QQLSYCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIM 291

Query: 359 GPLFRQIGRCLTSPHFQV 376
            PLF+ + RC++SPHFQV
Sbjct: 292 VPLFKILARCISSPHFQV 309

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 405
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 98.75
PLN00122170 serine/threonine protein phosphatase 2A; Provision 97.3
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 89.48
PF14500262 MMS19_N: Dos2-interacting transcription regulator 85.19
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 84.99
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-131  Score=985.32  Aligned_cols=336  Identities=61%  Similarity=1.028  Sum_probs=331.5

Q ss_pred             ccccCCCCCCCCCchHhHHHHHHHHhhccccccccCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 015533           53 YEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDFNDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISIN  132 (405)
Q Consensus        53 ~~~~~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~N  132 (405)
                      .++++||+|+|||++++++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++++.+|+++++|+++|
T Consensus        40 ~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~n  119 (457)
T KOG2085|consen   40 VELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVN  119 (457)
T ss_pred             CCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence            34999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCCCCCCCCCccccCCCCchhHHHHHHHHHHHhhcCCChHHHhhcCCHHHHHHHhhccCCCChhH
Q 015533          133 IFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHRE  212 (405)
Q Consensus       133 IFR~lPp~~~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdS~DpRE  212 (405)
                      |||++||..+++      .+|+|||||++|++|||||+||++|+||++||++|+++||+|||++||++|+++||||||||
T Consensus       120 ifR~lpp~~n~~------~~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRE  193 (457)
T KOG2085|consen  120 IFRTLPPSVNPT------GFDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRE  193 (457)
T ss_pred             hhccCCcccCCC------cCCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHH
Confidence            999999998764      38899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCC
Q 015533          213 REYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPK  292 (405)
Q Consensus       213 Rd~LktiLhrIY~Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKeEhk~fl~~vLiPLHk~~  292 (405)
                      ||+|||+|||||||||++|+|||++|||+||+|||||++||||||||||+||||||||+||||||+.|+.||||||||++
T Consensus       194 Re~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k  273 (457)
T KOG2085|consen  194 REFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPK  273 (457)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhHHHHHHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCC
Q 015533          293 CVALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSP  372 (405)
Q Consensus       293 ~l~~y~~qL~yci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~  372 (405)
                      +++.||+||+|||+||++|||+|++.||+||+||||+|||+|||||||||||||++++|.+|++||+|||++||+|++|+
T Consensus       274 ~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~  353 (457)
T KOG2085|consen  274 SLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSP  353 (457)
T ss_pred             CccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhhcccccccccc
Q 015533          373 HFQVHIIVTSLIYMSCYCSAVS  394 (405)
Q Consensus       373 hfqVAErAl~i~~n~~f~~~~~  394 (405)
                      |||||||||.+|+|+++.++|+
T Consensus       354 HFQVAEraL~~wnNe~i~~Li~  375 (457)
T KOG2085|consen  354 HFQVAERALYLWNNEYIRSLIS  375 (457)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999999999999987

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 9e-81
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 1e-80
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 2e-80
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 3e-79
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 3e-76
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure 
Iteration: 1

 Score =  297 bits (760), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 145/315 (46%), Positives = 202/315 (64%), Gaps = 5/315 (1%)
Query: 63  DVPSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQM 121
           DVP +++  LFI+K + CCVL DF +DP    + KE+K   L E+V++I  + + I E +
Sbjct: 44  DVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPI 103
Query: 122 QENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVS 181
              ++ M ++N+FR LPP+ +          +P+E++  LE AWPHLQLVYE  LR++ S
Sbjct: 104 YPEVVHMFAVNMFRTLPPSSNPTGAEF----DPEEDEPTLEAAWPHLQLVYEFFLRFLES 159
Query: 182 NGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNV 241
                 IAK+YID  FVL+LL+LFD+ED RER++LK  LHRIYG+F+  R +IR  INN+
Sbjct: 160 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 219
Query: 242 FYRFIFETERHXXXXXXXXXXXXXXXXFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQL 301
           FYRFI+ETE H                FALP+KEEHK+ L++ +LPLHK K +++YH QL
Sbjct: 220 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 279
Query: 302 TYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKXXXXXXXXXXXXXXTHPAEFQQCMGPL 361
            YCVVQF+EKD  L + V+  LL+YWP T+  K                P+EF + M PL
Sbjct: 280 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 339
Query: 362 FRQIGRCLTSPHFQV 376
           FRQ+ +C++SPHFQV
Sbjct: 340 FRQLAKCVSSPHFQV 354
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-134
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 1e-134
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-129
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
 Score =  390 bits (1003), Expect = e-134
 Identities = 175/351 (49%), Positives = 238/351 (67%), Gaps = 5/351 (1%)

Query: 27  HSSVANFESQPPILSPLPQPSPIIPKYEIQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDF 86
            S V          S +   +     ++   L    DVP +++  LFI+K + CCVL DF
Sbjct: 8   SSGVDLGTENLYFQSMVVDAANSNGPFQPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDF 67

Query: 87  -NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPPAFHENT 145
            +DP    + KE+K   L E+V++I  + + I E +   ++ M ++N+FR LPP+ +   
Sbjct: 68  VSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPT- 126

Query: 146 GSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLF 205
                  +P+E++  LE AWPHLQLVYE  LR++ S      IAK+YID  FVL+LL+LF
Sbjct: 127 ---GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELF 183

Query: 206 DTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSI 265
           D+ED RER++LK  LHRIYG+F+  R +IR  INN+FYRFI+ETE HNGI ELLEILGSI
Sbjct: 184 DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSI 243

Query: 266 INGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQLTYCVVQFVEKDYELADTVIRGLLR 325
           INGFALP+KEEHK+ L++ +LPLHK K +++YH QL YCVVQF+EKD  L + V+  LL+
Sbjct: 244 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLK 303

Query: 326 YWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQV 376
           YWP T+  KEV+FL ELEE+LDV  P+EF + M PLFRQ+ +C++SPHFQV
Sbjct: 304 YWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQV 354
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 93.6
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 93.24
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 92.17
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 82.51
1qgr_A 876 Protein (importin beta subunit); transport recepto 82.21
1qgr_A 876 Protein (importin beta subunit); transport recepto 80.93
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
Probab=100.00  E-value=2.4e-121  Score=927.12  Aligned_cols=336  Identities=52%  Similarity=0.920  Sum_probs=312.4

Q ss_pred             ccCCCCCCCCCchHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHh
Q 015533           55 IQNLPKFNDVPSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINI  133 (405)
Q Consensus        55 ~~~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NI  133 (405)
                      +++||+|+|++++++++||++||++||++||| +||.+|+++||+||+||+||++|++++++.+||++++++++||++||
T Consensus        36 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni  115 (392)
T 2jak_A           36 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM  115 (392)
T ss_dssp             ------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence            56999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCccccCCCCchhHHHHHHHHHHHhhcCCChHHHhhcCCHHHHHHHhhccCCCChhHH
Q 015533          134 FRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHRER  213 (405)
Q Consensus       134 FR~lPp~~~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdS~DpRER  213 (405)
                      ||++||.+++++    ..||+|||||+.|++|||||+||++|+||++|++|+++.||+|||++|+.+|+++|+|||||||
T Consensus       116 FR~lPp~~~~~~----~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRER  191 (392)
T 2jak_A          116 FRTLPPSSNPTG----AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRER  191 (392)
T ss_dssp             CSCCCC-------------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHH
T ss_pred             CCCCCCCCCccc----ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHH
Confidence            999999876542    4799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCc
Q 015533          214 EYLKMVLHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKC  293 (405)
Q Consensus       214 d~LktiLhrIY~Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKeEhk~fl~~vLiPLHk~~~  293 (405)
                      |+||++||||||||+++|+||||+|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.|||+||||+++
T Consensus       192 d~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~  271 (392)
T 2jak_A          192 DFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKS  271 (392)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhchhHHHHHHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCc
Q 015533          294 VALYHQQLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPH  373 (405)
Q Consensus       294 l~~y~~qL~yci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~h  373 (405)
                      ++.||+||+||++||++|||+|+++|++||+||||+||++|||+||+|||+||+.+++++|+++++|+|++||+|++|+|
T Consensus       272 l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~h  351 (392)
T 2jak_A          272 LSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH  351 (392)
T ss_dssp             GGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhcccccccccc
Q 015533          374 FQVHIIVTSLIYMSCYCSAVS  394 (405)
Q Consensus       374 fqVAErAl~i~~n~~f~~~~~  394 (405)
                      ||||||||.+|+|++|+++++
T Consensus       352 fqVAErAL~~wnNe~i~~li~  372 (392)
T 2jak_A          352 FQVAERALYYWNNEYIMSLIS  372 (392)
T ss_dssp             HHHHHHHHGGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHH
Confidence            999999999999999999986
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 405
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-140
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  402 bits (1034), Expect = e-140
 Identities = 171/315 (54%), Positives = 230/315 (73%), Gaps = 5/315 (1%)

Query: 63  DVPSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQM 121
           DVP +++  LFI+K + CCVL DF +DP    + KE+K   L E+V++I  + + I E +
Sbjct: 3   DVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPI 62

Query: 122 QENLMRMISINIFRALPPAFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVS 181
              ++ M ++N+FR LPP+ +          +P+E++  LE AWPHLQLVYE  LR++ S
Sbjct: 63  YPEVVHMFAVNMFRTLPPSSNPTGAEF----DPEEDEPTLEAAWPHLQLVYEFFLRFLES 118

Query: 182 NGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMVLHRIYGRFMSHRPFIRAGINNV 241
                 IAK+YID  FVL+LL+LFD+ED RER++LK  LHRIYG+F+  R +IR  INN+
Sbjct: 119 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 178

Query: 242 FYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQQL 301
           FYRFI+ETE HNGI ELLEILGSIINGFALP+KEEHK+ L++ +LPLHK K +++YH QL
Sbjct: 179 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 238

Query: 302 TYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPL 361
            YCVVQF+EKD  L + V+  LL+YWP T+  KEV+FL ELEE+LDV  P+EF + M PL
Sbjct: 239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 298

Query: 362 FRQIGRCLTSPHFQV 376
           FRQ+ +C++SPHFQV
Sbjct: 299 FRQLAKCVSSPHFQV 313

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 87.55
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 85.91
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 85.64
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 85.42
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 83.97
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-116  Score=875.16  Aligned_cols=330  Identities=52%  Similarity=0.941  Sum_probs=311.7

Q ss_pred             CCCCCchHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHhccCCCC
Q 015533           61 FNDVPSSEKLNLFIKKTQLCCVLCDF-NDPSKMTREKEIKHRNLQELVKFIQSDSSKINEQMQENLMRMISINIFRALPP  139 (405)
Q Consensus        61 l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lPp  139 (405)
                      |+|+|++||++||++||++||++||| +||++|+++||+||++|+||++|++++++.++|++++++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            68999999999999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCchhHHHHHHHHHHHhhcCCChHHHhhcCCHHHHHHHhhccCCCChhHHHHHHHH
Q 015533          140 AFHENTGSLPDVGEPDEEDAWLEPAWPHLQLVYEILLRYIVSNGADKKIAKRYIDHTFVLKLLDLFDTEDHREREYLKMV  219 (405)
Q Consensus       140 ~~~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lfdS~DpRERd~Lkti  219 (405)
                      .+++.+    .+||+|||||+.|++|||||+||++|+||++++++|++.+++|||++|+.+|+++|+|+||||||+||++
T Consensus        81 ~~~~~~----~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~  156 (343)
T d2jaka1          81 SSNPTG----AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTT  156 (343)
T ss_dssp             -------------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CCCccc----cccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            976642    5789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccchHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCchhhchh
Q 015533          220 LHRIYGRFMSHRPFIRAGINNVFYRFIFETERHNGIGELLEILGSIINGFALPMKEEHKLLLVRAMLPLHKPKCVALYHQ  299 (405)
Q Consensus       220 LhrIY~Kf~~~R~fIRk~i~nif~~fi~e~~~~nGIaELLeilgSIInGFa~PLKeEhk~fl~~vLiPLHk~~~l~~y~~  299 (405)
                      ||||||||+++|++||++|+++|++||||+++||||+|||||+|||||||++|||+||+.|+.++|+||||+++++.||+
T Consensus       157 l~~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~  236 (343)
T d2jaka1         157 LHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHP  236 (343)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCcccHHHHHHHHhhhCCCCCchhHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 015533          300 QLTYCVVQFVEKDYELADTVIRGLLRYWPVTNCQKEVLFLGELEEVLDVTHPAEFQQCMGPLFRQIGRCLTSPHFQVHII  379 (405)
Q Consensus       300 qL~yci~qF~eKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~~f~~i~~plF~~la~ci~S~hfqVAEr  379 (405)
                      ||+||++||++|||+|+.++++||+||||+||++||++||+||++|++.+++++|+++++|+|++||+|++|+|||||||
T Consensus       237 qL~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAEr  316 (343)
T d2jaka1         237 QLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAER  316 (343)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccccc
Q 015533          380 VTSLIYMSCYCSAVS  394 (405)
Q Consensus       380 Al~i~~n~~f~~~~~  394 (405)
                      ||.+|+|++|+++++
T Consensus       317 Al~~w~N~~~~~li~  331 (343)
T d2jaka1         317 ALYYWNNEYIMSLIS  331 (343)
T ss_dssp             HHGGGGCHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHH
Confidence            999999999999886
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure