Citrus Sinensis ID: 015542

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSSKTTTN
cHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcHHccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccEEEEEEccHHHHHcccccHHHccccccEEEEEccEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHccccccccHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccEEccccEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHcccccccccEcccccccccccEcHHHHcccccccccccccccccHHHcccccccccccccEccccccccccccccccccccEccHHHHHHHHHHHHHHHcccccc
MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLlkastatpgalyvqvgdpnmdhhcwerpedmdtprnvykvstqnpgsdVAAETAAALAAASVvfkdsdpsysTKLLKTAMKVFDFadkyrgsysdslnsvvcpfycsysgyldELLWGASWLHRASQNSSYLAYIQSnghilgaddddysfswddkraGTKVLLSKGFLEKNTQEFQLYKahsdnyicslipgsssfqaqytagglfykasesnlqYVTTTAFLLLTYAKYlssnggvatcgssTVKAENLIALAKKQVDyilgdnpakmsymvgfgerypqhvhhrgsslpsihahpdhiacndgfqylysrspnpnvltgailggpdnrdnfaddrnnyqqsepatyinapfVGAVAFFSSKTTTN
maftttllSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASvvfkdsdpsYSTKLLKTAMKVFDFADKYrgsysdslnsVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPDNRDNFADDRNNYQQSepatyinapfVGAVAFFSSKTTTN
MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVaaetaaalaaaSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGAddddysfswddKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPdnrdnfaddrnnYQQSEPATYINAPFVGAVAFFSSKTTTN
***TTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWE****************************AALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILG********************ATYINAPFVGAVAFF*******
MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAF*SSK****
MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQ**********SIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSSKTTTN
MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSSK****
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MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSSKTTTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query405 2.2.26 [Sep-21-2011]
P05522494 Endoglucanase 1 OS=Persea N/A no 0.997 0.817 0.806 0.0
Q6YXT7523 Endoglucanase 19 OS=Oryza yes no 0.992 0.768 0.674 1e-168
Q6Z715503 Endoglucanase 4 OS=Oryza no no 0.970 0.781 0.657 1e-158
Q9SRX3501 Endoglucanase 1 OS=Arabid yes no 0.977 0.790 0.634 1e-147
O81416516 Endoglucanase 17 OS=Arabi no no 0.982 0.771 0.619 1e-145
Q8LQ92499 Endoglucanase 3 OS=Oryza no no 0.982 0.797 0.586 1e-143
Q2V4L8484 Endoglucanase 3 OS=Arabid no no 0.977 0.818 0.585 1e-133
Q69NF5515 Endoglucanase 23 OS=Oryza no no 0.980 0.770 0.571 1e-133
Q9C9H5484 Endoglucanase 9 OS=Arabid no no 0.987 0.826 0.589 1e-133
Q9CAC1492 Endoglucanase 8 OS=Arabid no no 0.992 0.817 0.560 1e-133
>sp|P05522|GUN1_PERAE Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/404 (80%), Positives = 360/404 (89%)

Query: 1   MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHH 60
           MAFTTT+L+W +IEFG  M   +ENA+AA+RW TDYLLKASTAT  +LYVQVG+PN DH 
Sbjct: 90  MAFTTTMLAWGIIEFGCLMPEQVENARAALRWSTDYLLKASTATSNSLYVQVGEPNADHR 149

Query: 61  CWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVF 120
           CWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAAS+VF DSD SYSTKLL TA+KVF
Sbjct: 150 CWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASIVFGDSDSSYSTKLLHTAVKVF 209

Query: 121 DFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILG 180
           +FAD+YRGSYSDSL SVVCPFYCSYSGY DELLWGASWLHRASQN+SY+ YIQSNGH LG
Sbjct: 210 EFADQYRGSYSDSLGSVVCPFYCSYSGYNDELLWGASWLHRASQNASYMTYIQSNGHTLG 269

Query: 181 ADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTA 240
           ADDDDYSFSWDDKR GTKVLLSKGFL+   +E QLYK H+DNYICSLIPG+SSFQAQYT 
Sbjct: 270 ADDDDYSFSWDDKRVGTKVLLSKGFLQDRIEELQLYKVHTDNYICSLIPGTSSFQAQYTP 329

Query: 241 GGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYIL 300
           GGL YK S SNLQYVT+TAFLLLTYA YL+S+GG A+CG++TV A+NLI+LAKKQVDYIL
Sbjct: 330 GGLLYKGSASNLQYVTSTAFLLLTYANYLNSSGGHASCGTTTVTAKNLISLAKKQVDYIL 389

Query: 301 GDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGA 360
           G NPAKMSYMVGFGERYPQHVHHRGSSLPS+  HP+ I CN GFQYLYS  PNPN+L GA
Sbjct: 390 GQNPAKMSYMVGFGERYPQHVHHRGSSLPSVQVHPNSIPCNAGFQYLYSSPPNPNILVGA 449

Query: 361 ILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSSKTTT 404
           ILGGPDNRD+F+DDRNNYQQSEPATYINAP VGA+AFF++   T
Sbjct: 450 ILGGPDNRDSFSDDRNNYQQSEPATYINAPLVGALAFFAANPVT 493
Involved in ripening fruit process.
Persea americana (taxid: 3435)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 4
>sp|Q6YXT7|GUN19_ORYSJ Endoglucanase 19 OS=Oryza sativa subsp. japonica GN=Os08g0114200 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z715|GUN4_ORYSJ Endoglucanase 4 OS=Oryza sativa subsp. japonica GN=GLU14 PE=2 SV=1 Back     alignment and function description
>sp|Q9SRX3|GUN1_ARATH Endoglucanase 1 OS=Arabidopsis thaliana GN=CEL2 PE=2 SV=1 Back     alignment and function description
>sp|O81416|GUN17_ARATH Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02290 PE=2 SV=1 Back     alignment and function description
>sp|Q8LQ92|GUN3_ORYSJ Endoglucanase 3 OS=Oryza sativa subsp. japonica GN=GLU8 PE=2 SV=1 Back     alignment and function description
>sp|Q2V4L8|GUN3_ARATH Endoglucanase 3 OS=Arabidopsis thaliana GN=CEL5 PE=2 SV=2 Back     alignment and function description
>sp|Q69NF5|GUN23_ORYSJ Endoglucanase 23 OS=Oryza sativa subsp. japonica GN=GLU12 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9H5|GUN9_ARATH Endoglucanase 9 OS=Arabidopsis thaliana GN=CEL3 PE=1 SV=1 Back     alignment and function description
>sp|Q9CAC1|GUN8_ARATH Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
2290681505 acidic cellulase [Citrus sinensis] 1.0 0.801 0.997 0.0
224057986494 predicted protein [Populus trichocarpa] 0.990 0.811 0.875 0.0
13383303494 endo-1,4-beta glucanase [Populus alba] 0.990 0.811 0.867 0.0
429326590494 korrigan [Populus tomentosa] 0.990 0.811 0.865 0.0
359474153466 PREDICTED: endoglucanase 1 isoform 1, pa 0.987 0.858 0.875 0.0
255555765494 endo-1,4-beta-glucanase, putative [Ricin 0.992 0.813 0.858 0.0
347466579494 endo-1,4-beta-glucanase [Populus trichoc 0.990 0.811 0.857 0.0
429326592494 korrigan [Populus tomentosa] 0.990 0.811 0.855 0.0
1125032494 cellulase precursor [Populus alba] 0.990 0.811 0.860 0.0
4691450494 endo-1,4-beta glucanase [Populus alba] g 0.990 0.811 0.850 0.0
>gi|2290681|gb|AAB65155.1| acidic cellulase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/405 (99%), Positives = 405/405 (100%)

Query: 1   MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHH 60
           MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHH
Sbjct: 101 MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHH 160

Query: 61  CWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVF 120
           CWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVF
Sbjct: 161 CWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVF 220

Query: 121 DFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILG 180
           DFADKYRGSYSDSLNSVVCP+YCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILG
Sbjct: 221 DFADKYRGSYSDSLNSVVCPYYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILG 280

Query: 181 ADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTA 240
           ADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTA
Sbjct: 281 ADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTA 340

Query: 241 GGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYIL 300
           GGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYIL
Sbjct: 341 GGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYIL 400

Query: 301 GDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGA 360
           GDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGA
Sbjct: 401 GDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGA 460

Query: 361 ILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSSKTTTN 405
           ILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSSKTTTN
Sbjct: 461 ILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSSKTTTN 505

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224057986|ref|XP_002299423.1| predicted protein [Populus trichocarpa] gi|222846681|gb|EEE84228.1| predicted protein [Populus trichocarpa] gi|347466577|gb|AEO97201.1| endo-1,4-beta-glucanase [Populus trichocarpa] gi|347466631|gb|AEO97228.1| endo-1,4-beta-glucanase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|13383303|dbj|BAB39482.1| endo-1,4-beta glucanase [Populus alba] Back     alignment and taxonomy information
>gi|429326590|gb|AFZ78635.1| korrigan [Populus tomentosa] Back     alignment and taxonomy information
>gi|359474153|ref|XP_002279780.2| PREDICTED: endoglucanase 1 isoform 1, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555765|ref|XP_002518918.1| endo-1,4-beta-glucanase, putative [Ricinus communis] gi|223541905|gb|EEF43451.1| endo-1,4-beta-glucanase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|347466579|gb|AEO97202.1| endo-1,4-beta-glucanase [Populus trichocarpa] gi|347466633|gb|AEO97229.1| endo-1,4-beta-glucanase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|429326592|gb|AFZ78636.1| korrigan [Populus tomentosa] Back     alignment and taxonomy information
>gi|1125032|dbj|BAA06877.1| cellulase precursor [Populus alba] Back     alignment and taxonomy information
>gi|4691450|dbj|BAA77239.1| endo-1,4-beta glucanase [Populus alba] gi|13383305|dbj|BAB39483.1| endo-1,4-beta-glucanase [Populus alba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
TAIR|locus:2024670501 CEL2 "cellulase 2" [Arabidopsi 0.977 0.790 0.583 1.1e-126
TAIR|locus:2137824516 GH9B13 "glycosyl hydrolase 9B1 0.982 0.771 0.568 3.4e-125
TAIR|locus:2825314484 CEL3 "cellulase 3" [Arabidopsi 0.987 0.826 0.542 7.1e-116
TAIR|locus:2017704484 CEL5 "cellulase 5" [Arabidopsi 0.977 0.818 0.54 3.1e-115
TAIR|locus:2033600492 GH9B1 "glycosyl hydrolase 9B1" 0.992 0.817 0.516 2.8e-114
TAIR|locus:2028015489 GH9B6 "glycosyl hydrolase 9B6" 0.985 0.815 0.525 1.4e-112
TAIR|locus:2120242497 GH9B18 "glycosyl hydrolase 9B1 0.987 0.804 0.511 3.3e-111
TAIR|locus:2118519478 GH9B14 "glycosyl hydrolase 9B1 0.967 0.820 0.474 6.6e-97
TAIR|locus:2120232493 GH9B17 "glycosyl hydrolase 9B1 0.987 0.811 0.436 6.6e-97
TAIR|locus:2128394479 GH9B15 "glycosyl hydrolase 9B1 0.967 0.818 0.466 8.7e-95
TAIR|locus:2024670 CEL2 "cellulase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 233/399 (58%), Positives = 286/399 (71%)

Query:     1 MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHH 60
             MAFTTT+LSWS+IEFG  M++ L NAK AIRW TD+LLKA T+ P  +YVQVGDPNMDH 
Sbjct:   104 MAFTTTMLSWSLIEFGGLMKSELPNAKDAIRWATDFLLKA-TSHPDTIYVQVGDPNMDHA 162

Query:    61 CWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVF 120
             CWERPEDMDTPR+V+KV   NPGSD+           S+VF+  DPSYS  LL+ A+ VF
Sbjct:   163 CWERPEDMDTPRSVFKVDKNNPGSDIAGEIAAALAAASIVFRKCDPSYSNHLLQRAITVF 222

Query:   121 DFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILG 180
              FADKYRG YS  L   VCPFYCSYSGY DELLWGA+WL +A+ N +YL YI++NG ILG
Sbjct:   223 TFADKYRGPYSAGLAPEVCPFYCSYSGYQDELLWGAAWLQKATNNPTYLNYIKANGQILG 282

Query:   181 AXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTA 240
             A           K  G ++LLSK FL +  +  + YK H+D++ICS++PG+SS  +QYT 
Sbjct:   283 ADEFDNMFSWDNKHVGARILLSKEFLIQKVKSLEEYKEHADSFICSVLPGASS--SQYTP 340

Query:   241 GGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYIL 300
             GGL +K  ESN+QYVT+T+FLLLTYAKYL+S   VA CG S V    L ++AKKQVDY+L
Sbjct:   341 GGLLFKMGESNMQYVTSTSFLLLTYAKYLTSARTVAYCGGSVVTPARLRSIAKKQVDYLL 400

Query:   301 GDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGA 360
             G NP KMSYMVG+G +YP+ +HHRGSSLPS+  HP  I C+DGF    S+SPNPN L GA
Sbjct:   401 GGNPLKMSYMVGYGLKYPRRIHHRGSSLPSVAVHPTRIQCHDGFSLFTSQSPNPNDLVGA 460

Query:   361 ILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVAFFS 399
             ++GGP            Y +SEPATYINAP VGA+A+ +
Sbjct:   461 VVGGPDQNDQFPDERSDYGRSEPATYINAPLVGALAYLA 499
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0007389 "pattern specification process" evidence=TAS
GO:0008810 "cellulase activity" evidence=TAS
GO:0009624 "response to nematode" evidence=IEP
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010093 "specification of floral organ identity" evidence=RCA
GO:0048440 "carpel development" evidence=RCA
GO:0048507 "meristem development" evidence=RCA
TAIR|locus:2137824 GH9B13 "glycosyl hydrolase 9B13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825314 CEL3 "cellulase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017704 CEL5 "cellulase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033600 GH9B1 "glycosyl hydrolase 9B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028015 GH9B6 "glycosyl hydrolase 9B6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120242 GH9B18 "glycosyl hydrolase 9B18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118519 GH9B14 "glycosyl hydrolase 9B14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120232 GH9B17 "glycosyl hydrolase 9B17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128394 GH9B15 "glycosyl hydrolase 9B15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRX3GUN1_ARATH3, ., 2, ., 1, ., 40.63400.97770.7904yesno
P05522GUN1_PERAE3, ., 2, ., 1, ., 40.80690.99750.8178N/Ano
P38534GUNX_PRUPE3, ., 2, ., 1, ., 40.82860.61720.9960N/Ano
Q6YXT7GUN19_ORYSJ3, ., 2, ., 1, ., 40.67400.99250.7686yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.40.991
3rd Layer3.2.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
PLN02266510 PLN02266, PLN02266, endoglucanase 0.0
PLN02308492 PLN02308, PLN02308, endoglucanase 0.0
pfam00759437 pfam00759, Glyco_hydro_9, Glycosyl hydrolase famil 0.0
PLN03009495 PLN03009, PLN03009, cellulase 0.0
PLN02175484 PLN02175, PLN02175, endoglucanase 1e-172
PLN02613498 PLN02613, PLN02613, endoglucanase 1e-165
PLN02171 629 PLN02171, PLN02171, endoglucanase 1e-154
PLN02345469 PLN02345, PLN02345, endoglucanase 1e-144
PLN00119489 PLN00119, PLN00119, endoglucanase 1e-140
PLN02340 614 PLN02340, PLN02340, endoglucanase 1e-139
PLN02420525 PLN02420, PLN02420, endoglucanase 1e-136
PLN02909486 PLN02909, PLN02909, Endoglucanase 1e-133
>gnl|CDD|215150 PLN02266, PLN02266, endoglucanase Back     alignment and domain information 
 Score =  614 bits (1585), Expect = 0.0
 Identities = 259/399 (64%), Positives = 316/399 (79%), Gaps = 1/399 (0%)

Query: 1   MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHH 60
           MAFTTT+LSWSVIEFG  M++ L+NAK AIRW TDYLLKA TA P  +YVQVGD N DH 
Sbjct: 107 MAFTTTMLSWSVIEFGGLMKSELQNAKDAIRWATDYLLKA-TAHPDTIYVQVGDANKDHA 165

Query: 61  CWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVF 120
           CWERPEDMDTPR+V+KV    PGSDVAAETAAALAAAS+VF+ SDP+YS  L++ A++VF
Sbjct: 166 CWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFRKSDPTYSKLLVRRAIRVF 225

Query: 121 DFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILG 180
            FADKYRG+YS+ L   VCPFYCSYSGY DELLWGA+WLH+A++N +YL YIQ NG ILG
Sbjct: 226 QFADKYRGAYSNGLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVNGQILG 285

Query: 181 ADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTA 240
           AD+ D +F WD+K  G ++LLSK FL +  Q    YK H+DN+ICS+IPG+     QYT 
Sbjct: 286 ADEFDNTFGWDNKHVGARILLSKAFLVQKVQSLHEYKGHADNFICSVIPGAPFSSTQYTP 345

Query: 241 GGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYIL 300
           GGL +K S+SN+QYVT+T+FLLLTYAKYL+S   V  CG + V    L ++AKKQVDY+L
Sbjct: 346 GGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAKTVVNCGGTVVTPARLRSIAKKQVDYLL 405

Query: 301 GDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGA 360
           GDNP KMSYMVG+G RYP+ +HHRGSSLPS+ AHP  I C+ GF  + S+SPNPNVL GA
Sbjct: 406 GDNPLKMSYMVGYGPRYPRRIHHRGSSLPSVAAHPAKIQCSQGFSIMNSQSPNPNVLVGA 465

Query: 361 ILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFS 399
           ++GGPD  D F D+R++Y+QSEPATYINAP VGA+A+ +
Sbjct: 466 VVGGPDQHDRFPDERSDYEQSEPATYINAPLVGALAYLA 504

Length = 510
>gnl|CDD|177943 PLN02308, PLN02308, endoglucanase Back     alignment and domain information
>gnl|CDD|216104 pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9 Back     alignment and domain information
>gnl|CDD|166650 PLN03009, PLN03009, cellulase Back     alignment and domain information
>gnl|CDD|177832 PLN02175, PLN02175, endoglucanase Back     alignment and domain information
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase Back     alignment and domain information
>gnl|CDD|215115 PLN02171, PLN02171, endoglucanase Back     alignment and domain information
>gnl|CDD|177979 PLN02345, PLN02345, endoglucanase Back     alignment and domain information
>gnl|CDD|177732 PLN00119, PLN00119, endoglucanase Back     alignment and domain information
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase Back     alignment and domain information
>gnl|CDD|178040 PLN02420, PLN02420, endoglucanase Back     alignment and domain information
>gnl|CDD|178497 PLN02909, PLN02909, Endoglucanase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 405
PLN02266510 endoglucanase 100.0
PLN02308492 endoglucanase 100.0
PLN02340 614 endoglucanase 100.0
PLN02175484 endoglucanase 100.0
PLN02345469 endoglucanase 100.0
PLN00119489 endoglucanase 100.0
PLN02909486 Endoglucanase 100.0
PLN02420525 endoglucanase 100.0
PLN02171 629 endoglucanase 100.0
PLN03009495 cellulase 100.0
PLN02613498 endoglucanase 100.0
PF00759444 Glyco_hydro_9: Glycosyl hydrolase family 9; InterP 100.0
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 96.46
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 96.22
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 96.12
COG1331667 Highly conserved protein containing a thioredoxin 95.93
KOG2787403 consensus Lanthionine synthetase C-like protein 1 95.9
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 92.25
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 88.56
>PLN02266 endoglucanase Back     alignment and domain information 
Probab=100.00  E-value=8.3e-109  Score=837.38  Aligned_cols=402  Identities=64%  Similarity=1.143  Sum_probs=374.0

Q ss_pred             CchhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHcccCCCCcEEEEeCCCCCCCCCCCCCCCCCCCcceEEcCCC
Q 015542            1 MAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQ   80 (405)
Q Consensus         1 ~a~t~t~L~w~~~~f~~~~~n~~pdiLdeikwg~D~llk~q~~~~g~~y~qVg~~~~dh~~W~~Pe~~~~~R~~~~~~~~   80 (405)
                      ||||+++|+|+++||++.|.+++||||||||||+|||||| |+.+|+||+|||++..||.+|++||+++.+||+|.|+.+
T Consensus       107 ~a~s~t~L~w~~~ef~~~~~~~~pd~Ldelkw~~D~llk~-~~~~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~  185 (510)
T PLN02266        107 MAFTTTMLSWSVIEFGGLMKSELQNAKDAIRWATDYLLKA-TAHPDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKN  185 (510)
T ss_pred             HHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHh-ccCCCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCC
Confidence            7999999999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCccchHHHHHHHHHH
Q 015542           81 NPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLH  160 (405)
Q Consensus        81 ~p~s~~~~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~~a~~~pg~y~~~~~~~~~~~Y~s~~~~~De~~wAAaeLy  160 (405)
                      +|||++++++|||||+||||||++||+||++||++||++|+|++++|+.|.+++.+...++|.+.+++.||++|||+|||
T Consensus       186 ~pgsd~a~e~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~fa~~~~g~y~~~~~~~~~~~y~s~s~~~DEl~WAAawLy  265 (510)
T PLN02266        186 TPGSDVAAETAAALAAASLVFRKSDPTYSKLLVRRAIRVFQFADKYRGAYSNGLKPDVCPFYCSYSGYQDELLWGAAWLH  265 (510)
T ss_pred             CCchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCcccCCCcccCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999775433356788876789999999999999


Q ss_pred             HHcCChhHHHHHHHcccccCCCCCCCccCccchhhHHHHhhcccccccchHHHHHHHHHHHHHHHHhCCCCCCCcccccC
Q 015542          161 RASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTA  240 (405)
Q Consensus       161 ~aTg~~~Yl~~~~~~~~~~~~~~~~~~~~Wd~~~~~~~~ll~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~  240 (405)
                      ++|||++|+++++...+.++.......++||++..++++||++....+....+..+++.++.|+|.+++++++..+++||
T Consensus       266 ~ATGd~~Yl~~~~~~~~~~g~~~~~~~~~WD~k~~ga~vLLa~~~~~~~~~~~~~yk~~~d~~~~~~~~~~~~~~~~~Tp  345 (510)
T PLN02266        266 KATKNPTYLNYIQVNGQILGADEFDNTFGWDNKHVGARILLSKAFLVQKVQSLHEYKGHADNFICSVIPGAPFSSTQYTP  345 (510)
T ss_pred             HHhCCHHHHHHHHHHHhhccccccCCccCcchhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhccCCCCCCccccCC
Confidence            99999999999988766555444556899999999999999885444445677889999999999998888877889999


Q ss_pred             CCccccCCCChHHHHHHHHHHHHHHhhhhhcCCCccccCCCccCHHHHHHHHHhcchhhcCCCCCCcceeeecCCCCCCC
Q 015542          241 GGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVGFGERYPQH  320 (405)
Q Consensus       241 ~g~~~~~~wg~~~~~~n~a~l~~~~a~~l~~~~~~~~~~~~~~~~~~y~~~a~~ql~YiLG~Np~~~SyV~G~G~~~p~~  320 (405)
                      |||.|..+|||+||++|++||+++|++++...+.++.|++......+|++||++|||||||+||+++|||||||.|+|++
T Consensus       346 GGL~~~~~wg~lrYa~~~afla~vya~~l~~~~~~~~cg~~~~~~~~~~~fA~~QidYiLG~NP~~~SyvVG~G~~~P~~  425 (510)
T PLN02266        346 GGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAKTVVNCGGTVVTPARLRSIAKKQVDYLLGDNPLKMSYMVGYGPRYPRR  425 (510)
T ss_pred             CeeEEeCCCCcHHHHHHHHHHHHHHHHHHHhcCCceecCCCccCHHHHHHHHHhhhceeccCCCCCCceEEecCCCCCcc
Confidence            99999999999999999999999999999877777889988888999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCccccCCCcccccCCCCCCCCcccceecCCCCCCCCccCcCccccccccccCchHHHHHHHHhhc
Q 015542          321 VHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSS  400 (405)
Q Consensus       321 pHHr~s~~~~~~~~p~~~~c~~g~~~~~~~~~~~~~~~GalvGGPn~~d~y~D~~~~y~~nE~aid~NA~~~~~la~l~~  400 (405)
                      ||||+||||.+..+|.++.|.+||++++++.||||+|.|||||||+.+|.|.|+|.+|++|||||||||+||++||+|++
T Consensus       426 pHHR~as~p~~~~~~~~~~C~~g~~~~~~~~~n~~vL~GAlVGGPd~~D~y~D~r~~y~~nEva~dyNA~~vgalA~l~~  505 (510)
T PLN02266        426 IHHRGSSLPSVAAHPAKIQCSQGFSIMNSQSPNPNVLVGAVVGGPDQHDRFPDERSDYEQSEPATYINAPLVGALAYLAH  505 (510)
T ss_pred             ccccCCCCCCcccCccccCCCCCccccCCCCCCcceecceeecCCCCCCCCCccccccccCcceeecchHHHHHHHHHHH
Confidence            99999999999899999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             cCC
Q 015542          401 KTT  403 (405)
Q Consensus       401 ~~~  403 (405)
                      .-+
T Consensus       506 ~yg  508 (510)
T PLN02266        506 SYG  508 (510)
T ss_pred             Hhc
Confidence            543

>PLN02308 endoglucanase Back     alignment and domain information
>PLN02340 endoglucanase Back     alignment and domain information
>PLN02175 endoglucanase Back     alignment and domain information
>PLN02345 endoglucanase Back     alignment and domain information
>PLN00119 endoglucanase Back     alignment and domain information
>PLN02909 Endoglucanase Back     alignment and domain information
>PLN02420 endoglucanase Back     alignment and domain information
>PLN02171 endoglucanase Back     alignment and domain information
>PLN03009 cellulase Back     alignment and domain information
>PLN02613 endoglucanase Back     alignment and domain information
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
1ks8_A433 The Structure Of Endoglucanase From Termite, Nasuti 2e-52
1js4_A 605 EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Le 5e-49
2xfg_A466 Reassembly And Co-Crystallization Of A Family 9 Pro 7e-38
4dod_A475 The Structure Of Cbescii Cela Gh9 Module Length = 4 4e-37
1ga2_A 614 The Crystal Structure Of Endoglucanase 9g From Clos 1e-31
1k72_A 614 The X-ray Crystal Structure Of Cel9g Complexed With 1e-31
1ia6_A441 Crystal Structure Of The Cellulase Cel9m Of C. Cell 4e-30
2yik_A611 Catalytic Domain Of Clostridium Thermocellum Celt L 1e-25
3ez8_A537 Crystal Structure Of Endoglucanase Cel9a From The T 4e-04
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. Length = 433 Back     alignment and structure 
Iteration: 1

 Score =  203 bits (516), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 194/400 (48%), Gaps = 42/400 (10%)
Query: 1   MAFTTTLLSWSVIEF--GSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMD 58
           MA+T T+L+W +I+F  G S    L++ + A++W TDY +KA T +    Y QVG  + D
Sbjct: 65  MAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHT-SQNEFYGQVGQGDAD 123
Query: 59  HHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMK 118
           H  W RPEDM   R  YK+ T  PGSD+           S+VF++ D +YS  LL  A +
Sbjct: 124 HAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQ 183
Query: 119 VFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHI 178
           +FDFA+ YRG YSDS+      FY S + Y DEL+W A+WL+RA+ +++YL   +S    
Sbjct: 184 LFDFANNYRGKYSDSITDARN-FYAS-ADYRDELVWAAAWLYRATNDNTYLNTAESLYDE 241
Query: 179 LGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQY 238
            G            K +G +VLL+K          Q YK    +Y+  LI        Q 
Sbjct: 242 FGLQNWGGGLNWDSKVSGVQVLLAK------LTNKQAYKDTVQSYVNYLINNQ-----QK 290
Query: 239 TAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDY 298
           T  GL Y      L++    AF++L  A+               + A +    A+ Q+DY
Sbjct: 291 TPKGLLYIDMWGTLRHAANAAFIMLEAAEL-------------GLSASSYRQFAQTQIDY 337
Query: 299 ILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPN--V 356
            LGD     S++ GFG   P   HHR SS P   A  D    N         SP+PN  V
Sbjct: 338 ALGD--GGRSFVCGFGSNPPTRPHHRSSSCPPAPATCDWNTFN---------SPDPNYHV 386
Query: 357 LTGAILGGPXXXXXXXXXXXXYQQSEPATYINAPFVGAVA 396
           L+GA++GGP            Y  +E AT  NA F  A+A
Sbjct: 387 LSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALA 426
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Length = 605 Back     alignment and structure
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules Length = 466 Back     alignment and structure
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module Length = 475 Back     alignment and structure
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium Cellulolyticum Complexed With Cellobiose Length = 614 Back     alignment and structure
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With Cellotriose Length = 614 Back     alignment and structure
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C. Cellulolyticum Length = 441 Back     alignment and structure
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt Length = 611 Back     alignment and structure
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The Thermoacidophilic Alicyclobacillus Acidocaldarius Length = 537 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 1e-141
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 1e-138
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 1e-138
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 1e-135
2yik_A611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 1e-132
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 1e-130
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 1e-128
1clc_A639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 1e-121
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 1e-108
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 7e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Length = 466 Back     alignment and structure
 Score =  408 bits (1051), Expect = e-141
 Identities = 131/408 (32%), Positives = 192/408 (47%), Gaps = 41/408 (10%)

Query: 1   MAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMD 58
           M+++  +L W+V E+  + +      +    I+W  DY +K         Y QVGD + D
Sbjct: 87  MSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPE-KDVYYYQVGDGHAD 145

Query: 59  HHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMK 118
           H  W   E M   R  YKV   +PGS V AET+AALA AS++FK  D  YS + LK A +
Sbjct: 146 HAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAKE 205

Query: 119 VFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHI 178
           +F+FAD  +        +    FY S+SG+ DEL W A WL+ A+ +SSYL   +S    
Sbjct: 206 LFEFADTTKSDDG---YTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAESYSDK 262

Query: 179 LGADDD------DYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSS 232
            G +         ++  WDD   GT +LL+     +   +   YK   + ++     G +
Sbjct: 263 WGYEPQTNIPKYKWAQCWDDVTYGTYLLLA-----RIKNDNGKYKEAIERHLDWWTTGYN 317

Query: 233 SFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALA 292
             +  YT  GL +     +L+Y TTTAFL   Y+ +               KA+  +  A
Sbjct: 318 GERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDWE---------NGDKEKAKTYLEFA 368

Query: 293 KKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSP 352
           + Q DY LG      S++VGFGE  P+  HHR +                          
Sbjct: 369 RSQADYALGSTG--RSFVVGFGENPPKRPHHRTAH-------------GSWADSQMEPPE 413

Query: 353 NPNVLTGAILGGPDNRDNFADDRNNYQQSEPATYINAPFVGAVAFFSS 400
           + +VL GA++GGPD+ DN+ DD +NY  +E A   NA FVG +A    
Sbjct: 414 HRHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLAKMYK 461
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Length = 605 Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Length = 433 Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Length = 614 Back     alignment and structure
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Length = 611 Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Length = 537 Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Length = 441 Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Length = 639 Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Length = 609 Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Length = 586 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 100.0
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 100.0
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 100.0
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 100.0
2yik_A611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 100.0
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 100.0
1clc_A639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 100.0
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 100.0
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 100.0
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 100.0
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 97.01
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 96.8
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 96.6
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 94.82
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 94.23
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 94.17
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 92.9
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 92.77
1nc5_A373 Hypothetical protein YTER; structural genomics, he 92.34
3k11_A445 Putative glycosyl hydrolase; structural genomics, 91.44
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 90.11
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 89.39
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 89.31
3pmm_A382 Putative cytoplasmic protein; structural genomics, 89.08
3k11_A445 Putative glycosyl hydrolase; structural genomics, 87.06
1nc5_A373 Hypothetical protein YTER; structural genomics, he 82.55
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 81.59
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Back     alignment and structure
Probab=100.00  E-value=2e-95  Score=742.24  Aligned_cols=368  Identities=36%  Similarity=0.589  Sum_probs=325.2

Q ss_pred             CchhHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHHHHHHHcccCCCCcEEEEeCCCCCCCCCCCCCCCCCCCcceEEcC
Q 015542            1 MAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVS   78 (405)
Q Consensus         1 ~a~t~t~L~w~~~~f~~~~~--n~~pdiLdeikwg~D~llk~q~~~~g~~y~qVg~~~~dh~~W~~Pe~~~~~R~~~~~~   78 (405)
                      ||||+++|+|+++||++.|+  |++||||||||||+|||||| |+++|.||+|||++..||.+|++||+++.+||+|.++
T Consensus        87 ~a~t~~~L~w~~~e~~~~~~~~~~~~d~ldeikwg~D~llk~-~~~~~~~y~qVgd~~~Dh~~W~~pe~~~~~R~~y~i~  165 (466)
T 2xfg_A           87 MSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKC-HPEKDVYYYQVGDGHADHAWWGPAEVMPMERPSYKVD  165 (466)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHHT-CSBTTEEEEEESCHHHHHTCCSCGGGCCSCCCEEEEE
T ss_pred             cHHHHHHHHHHHHHhHHHHhcCCCchHHHHHHHHHHHHHHHh-ccCCCcEEEEeCCCCccccccCCcccCCCCCceeEec
Confidence            79999999999999999996  89999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCccchHHHHHHHH
Q 015542           79 TQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASW  158 (405)
Q Consensus        79 ~~~p~s~~~~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~~a~~~pg~y~~~~~~~~~~~Y~s~~~~~De~~wAAae  158 (405)
                      .++|+|++++++|||||+||||||++||+||++||++||++|+||++||+.|...   ..+++|+|++++.||++|||+|
T Consensus       166 ~~~pgsd~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~~---~~~~~Y~s~s~~~DEl~WAAaw  242 (466)
T 2xfg_A          166 RSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAKELFEFADTTKSDDGYT---AANGFYNSWSGFYDELSWAAVW  242 (466)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHCCCTTCC---TTTTTSCCSSCSHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhcCCcCCCC---ccccccCCCCCCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998432   3578999988999999999999


Q ss_pred             HHHHcCChhHHHHHHHcccccCCC------CCCCccCccchhhHHHHhhcccccccch-HHHHHHHHHHHHHHHHhCCCC
Q 015542          159 LHRASQNSSYLAYIQSNGHILGAD------DDDYSFSWDDKRAGTKVLLSKGFLEKNT-QEFQLYKAHSDNYICSLIPGS  231 (405)
Q Consensus       159 Ly~aTg~~~Yl~~~~~~~~~~~~~------~~~~~~~Wd~~~~~~~~ll~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~  231 (405)
                      ||++|||++|+++++.+...++..      .....|+||++..++++||++.  .+++ ..++.++..++.+++    +.
T Consensus       243 Ly~ATgd~~Yl~~a~~~~~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~--~~~~~~~~~~~~~~~~~~~~----~~  316 (466)
T 2xfg_A          243 LYLATNDSSYLDKAESYSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLARI--KNDNGKYKEAIERHLDWWTT----GY  316 (466)
T ss_dssp             HHHHHCCHHHHHHHHHTTTTSCBSTTSSSBCCSSCCBTTBCHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTT----CB
T ss_pred             HHHHhCCHHHHHHHHHHHHHhccccccccccccCcCCcchhHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHh----cc
Confidence            999999999999999986554321      2245799999999999988763  2223 445555655555443    33


Q ss_pred             CCCcccccCCCccccCCCChHHHHHHHHHHHHHHhhhhhcCCCccccCCCccCHHHHHHHHHhcchhhcCCCCCCcceee
Q 015542          232 SSFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMV  311 (405)
Q Consensus       232 ~~~~~~~t~~g~~~~~~wg~~~~~~n~a~l~~~~a~~l~~~~~~~~~~~~~~~~~~y~~~a~~ql~YiLG~Np~~~SyV~  311 (405)
                      +..++++||+|+.|...||++||++|.+||+++|++++.       |+  ..+.++|+++|++|||||||+|  ++||||
T Consensus       317 ~~~~~~~tp~Gl~~~~~Wgs~~~~~n~afl~~~y~~~~~-------~~--~~~~~~y~~~A~~qidYiLG~N--~~Syvv  385 (466)
T 2xfg_A          317 NGERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDWEN-------GD--KEKAKTYLEFARSQADYALGST--GRSFVV  385 (466)
T ss_dssp             TTBCCCBCTTSCBCCCSSSHHHHHHHHHHHHHHHHTCTT-------SC--HHHHHHHHHHHHHHHHHHHTTT--SSCCBT
T ss_pred             CCCccccCCccccccCCCCchHHHHHHHHHHHHHHHhcC-------CC--cccHHHHHHHHHHhHHhhcCCC--CcceEe
Confidence            334789999999999999999999999999999988542       31  2357899999999999999999  999999


Q ss_pred             ecCCCCCCCccccCCCCCCCCCCCCccccCCCcccccCCCCCCCCcccceecCCCCCCCCccCcCccccccccccCchHH
Q 015542          312 GFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPDNRDNFADDRNNYQQSEPATYINAPF  391 (405)
Q Consensus       312 G~G~~~p~~pHHr~s~~~~~~~~p~~~~c~~g~~~~~~~~~~~~~~~GalvGGPn~~d~y~D~~~~y~~nE~aid~NA~~  391 (405)
                      |||+|+|++||||+++||..             +..++|.|||++|+|+||||||..|+|.|+|.+|++|||||||||+|
T Consensus       386 G~G~~~p~~pHHR~ss~~~~-------------~~~~~p~p~~~vl~GaLVGGP~~~D~y~D~~~~y~~nEvaid~NA~~  452 (466)
T 2xfg_A          386 GFGENPPKRPHHRTAHGSWA-------------DSQMEPPEHRHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGF  452 (466)
T ss_dssp             TSSSSCCSCCSCHHHHTCSS-------------SCTTSSSSCSSCCTTCBCCCCCTTSCCCCCTTCHHHHCCCHHHHHHH
T ss_pred             ccCCCCCCCCcCchhccCcc-------------ccccCCCCCCCCCccceeeCCCCccCcCcccccccccccchhhhHHH
Confidence            99999999999999988753             13456889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccC
Q 015542          392 VGAVAFFSSKT  402 (405)
Q Consensus       392 ~~~la~l~~~~  402 (405)
                      |++||+|+..-
T Consensus       453 v~~la~l~~~~  463 (466)
T 2xfg_A          453 VGLLAKMYKLY  463 (466)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999998753
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Back     alignment and structure
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 405
d1tf4a1460 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E 1e-131
d1ks8a_433 a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasu 1e-121
d1g87a1454 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E 1e-121
d1ia6a_431 a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clos 1e-112
d1ut9a1511 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobios 3e-95
d1clca1441 a.102.1.2 (A:135-575) CelD cellulase, C-terminal d 4e-92
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Length = 460 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]

 Score =  382 bits (983), Expect = e-131
 Identities = 150/410 (36%), Positives = 214/410 (52%), Gaps = 41/410 (10%)

Query: 1   MAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMD 58
           MAFT T+L+W  IE          +   K  +RW  DY +KA   +P  LYVQVGD + D
Sbjct: 66  MAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKA-HPSPNVLYVQVGDGDAD 124

Query: 59  HHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMK 118
           H  W   E M   R  +KV    PGSDVAAETAAA+AA+S+VF D DP+Y+  L++ A +
Sbjct: 125 HKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQ 184

Query: 119 VFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHI 178
           ++ FAD YRG YSD + +    FY S+SGY DEL+WGA WL++A+ + SYLA  +     
Sbjct: 185 LYTFADTYRGVYSDCVPA--GAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYDF 242

Query: 179 LGADDDD------YSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSS 232
           L  +         ++ +WDDK  GT VLL+K          Q Y   ++ ++     G +
Sbjct: 243 LSTEQQTDLRSYRWTIAWDDKSYGTYVLLAK------ETGKQKYIDDANRWLDYWTVGVN 296

Query: 233 SFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALA 292
             +  Y+ GG+    +   L+Y   TAF+ L YAK +             V+ +     A
Sbjct: 297 GQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVI----------DDPVRKQRYHDFA 346

Query: 293 KKQVDYILGDNPAKMSYMVGFGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSP 352
            +Q++Y LGDNP   SY+VGFG   P++ HHR +                    + S + 
Sbjct: 347 VRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAH-------------GSWTDSIASPAE 393

Query: 353 NPNVLTGAILGGPDNR-DNFADDRNNYQQSEPATYINAPFVGAVAFFSSK 401
           N +VL GA++GGP +  D + DDR +Y  +E AT  NA F  A+A    +
Sbjct: 394 NRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEE 443
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Length = 433 Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Length = 454 Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Length = 431 Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Length = 511 Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Length = 441 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
d1tf4a1460 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 100.0
d1g87a1454 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 100.0
d1clca1441 CelD cellulase, C-terminal domain {Clostridium the 100.0
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 100.0
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 93.09
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 92.34
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 87.59
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]

Probab=100.00  E-value=1e-86  Score=679.48  Aligned_cols=372  Identities=40%  Similarity=0.664  Sum_probs=319.5

Q ss_pred             CchhHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHHHHHHHcccCCCCcEEEEeCCCCCCCCCCCCCCCCCCCcceEEcC
Q 015542            1 MAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVS   78 (405)
Q Consensus         1 ~a~t~t~L~w~~~~f~~~~~--n~~pdiLdeikwg~D~llk~q~~~~g~~y~qVg~~~~dh~~W~~Pe~~~~~R~~~~~~   78 (405)
                      +|+|+++|+|++++|++.|+  |++||||||||||+|||||| |+++|.||+|||++..||++|++|+.+..+|+.+.+.
T Consensus        66 ~a~~~~~L~~a~~~~~~~~~~~~~~pdlLdE~~wglD~llkm-q~~~g~~y~qvgdg~~dh~~w~~~~~~~~~~~~~~~~  144 (460)
T d1tf4a1          66 MAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKA-HPSPNVLYVQVGDGDADHKWWGPAEVMPMERPSFKVD  144 (460)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHHT-CSBTTBEEEEESCHHHHHHCCSCGGGCCSCCCEEEEB
T ss_pred             HHHHHHHHHHHHHHChHhhhcCCCcHHHHHHHHHHHHHHHhc-ccCCCeEEEEecCCCccccccCCCcCCCCCCCcceec
Confidence            47999999999999999996  89999999999999999999 8999999999999999999999999999999999988


Q ss_pred             CCCCchHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCccchHHHHHHHH
Q 015542           79 TQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASW  158 (405)
Q Consensus        79 ~~~p~s~~~~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~~a~~~pg~y~~~~~~~~~~~Y~s~~~~~De~~wAAae  158 (405)
                      .++|+|++++++|||||+|||||++.||+||++||++||++|+|+++||+.|.+..+. ...+|.+ +++.||++|||+|
T Consensus       145 ~~~~~t~~~~~~aAalA~as~v~~~~d~~~A~~~l~aA~~a~~~a~~~~~~~~~~~~~-~~~~~~~-~~~~De~~wAAae  222 (460)
T d1tf4a1         145 PSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFADTYRGVYSDCVPA-GAFYNSW-SGYQDELVWGAYW  222 (460)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHSCCCGGGTSTT-HHHHCCS-SCSHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCcCCCc-cccchHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999998776433 3345665 8899999999999


Q ss_pred             HHHHcCChhHHHHHHHcccccCC------CCCCCccCccchhhHHHHhhcccccccchHHHHHHHHHHHHHHHHhCCCCC
Q 015542          159 LHRASQNSSYLAYIQSNGHILGA------DDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSS  232 (405)
Q Consensus       159 Ly~aTg~~~Yl~~~~~~~~~~~~------~~~~~~~~Wd~~~~~~~~ll~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  232 (405)
                      ||++|||++|+++++.....+..      ......++|+++..+..+++++..  .    +..+++.++.+++.+..+..
T Consensus       223 Ly~aTG~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~la~~~--~----~~~~~~~~~~~~~~~~~~~~  296 (460)
T d1tf4a1         223 LYKATGDDSYLAKAEYEYDFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKET--G----KQKYIDDANRWLDYWTVGVN  296 (460)
T ss_dssp             HHHHHCCHHHHHHHHHHGGGSCBCTTSSCBCCSSCCSSSCCHHHHHHHHHHHH--C----CHHHHHHHHHHHHHTTTCBT
T ss_pred             HHHHhCCHHHHHHHHHHhhhcccccccccccccccccccchhHHHHHHHHHHh--h----hhHHHHHHHHHHHHHhhhcc
Confidence            99999999999999987543321      123446899999888877775421  1    23455666666655544433


Q ss_pred             CCcccccCCCccccCCCChHHHHHHHHHHHHHHhhhhhcCCCccccCCCccCHHHHHHHHHhcchhhcCCCCCCcceeee
Q 015542          233 SFQAQYTAGGLFYKASESNLQYVTTTAFLLLTYAKYLSSNGGVATCGSSTVKAENLIALAKKQVDYILGDNPAKMSYMVG  312 (405)
Q Consensus       233 ~~~~~~t~~g~~~~~~wg~~~~~~n~a~l~~~~a~~l~~~~~~~~~~~~~~~~~~y~~~a~~ql~YiLG~Np~~~SyV~G  312 (405)
                      ...++++++++.|...||++++++|.+|+++++++++..          ..+.++|+++|++|||||||+||+++|||||
T Consensus       297 ~~~~~~~~~~~~~~~~WGsn~~~~n~a~~~~~a~~~~~~----------~~~~~~y~~~A~~qldylLG~Np~~~SyVtG  366 (460)
T d1tf4a1         297 GQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVIDD----------PVRKQRYHDFAVRQINYALGDNPRNSSYVVG  366 (460)
T ss_dssp             TBCCCBCTTSCBCCCSSSHHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHHHTCSTTCCCSBTT
T ss_pred             cccCCcCCCcceecCCCchHHHHHHHHHHHHHHHHHhcc----------cCCHHHHHHHHHHhhheecccCCCCcCCCcc
Confidence            346778999999989999999999999999998775421          2346899999999999999999999999999


Q ss_pred             cCCCCCCCccccCCCCCCCCCCCCccccCCCcccccCCCCCCCCcccceecCCC-CCCCCccCcCccccccccccCchHH
Q 015542          313 FGERYPQHVHHRGSSLPSIHAHPDHIACNDGFQYLYSRSPNPNVLTGAILGGPD-NRDNFADDRNNYQQSEPATYINAPF  391 (405)
Q Consensus       313 ~G~~~p~~pHHr~s~~~~~~~~p~~~~c~~g~~~~~~~~~~~~~~~GalvGGPn-~~d~y~D~~~~y~~nE~aid~NA~~  391 (405)
                      +|+|+|++||||.++|+..             +....+.|||++|+|+|||||| ..+||+|++++|++|||||||||+|
T Consensus       367 ~G~~~p~~pHHR~s~~~~~-------------~~~~~~~p~~~~l~G~lvGGPn~~~~~y~D~~~~y~~nEvai~~NA~l  433 (460)
T d1tf4a1         367 FGNNPPRNPHHRTAHGSWT-------------DSIASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGF  433 (460)
T ss_dssp             SSSSCCSCCSCHHHHTCSS-------------SCTTSSSSCSSCCTTCBCCCCSSTTCCCCCCTTCTTTTCCCGGGGHHH
T ss_pred             CCCCCCCCCcCccccCCCc-------------cccCCCCCCCCCcceeEecCCCCCCCCcCcCcchhhhhhhHHHHHHHH
Confidence            9999999999999887642             2345678999999999999998 5799999999999999999999999


Q ss_pred             HHHHHHhhccCCC
Q 015542          392 VGAVAFFSSKTTT  404 (405)
Q Consensus       392 ~~~la~l~~~~~~  404 (405)
                      |++||+|++..+.
T Consensus       434 v~~la~l~~~~~~  446 (460)
T d1tf4a1         434 SSALAMLVEEYGG  446 (460)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999887543
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure