Citrus Sinensis ID: 015568


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
MMGSRYLSKVEKILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQSKRCFGHDVRGDAQLNRDFLVQLWISDRRRQSSREKRRKVVRYKNIDESIYDPRPFGRWFSGATVTEEKPLDKGKPILGQPPVSQTISGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAVGE
ccccHHHHHHHHHHHHccccccccccccEEEEccccccccccccccHHHHHHHcccccHHHHHHHcccEEccccEEEccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcHHHHHHHcccccccEEEEcccccccEEEEEEEccHHHHHHHccccccEEEEEEcccccEEEEEEcccEEEEccEEEEEcccEEEEEEEEEEEEEEEEEEEEccccEEEEEccccccccEEEEcccccEEEEEEcccccccEEEEEcccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHEEEEEEEEccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHEEEEEEEcccccEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHEEEEEEHHHHHHHHcccccccEEEEccccccccEEEEEEcccHHHHHHccccccEEEEEEcccccEEEEEEcccHHHcccEEccccccEEEEEEEEccccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccccHHHHHccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEccc
MMGSRYLSKVEKILSSCSAtannrhngifktlklgvfqpeyfstmSLQHLErfgtngltdsvLERSLVyrykgsffqskrcfghdvrgdaqLNRDFLVQLWISDRRRQSSREKRRKVVryknidesiydprpfgrwfsgatvteekpldkgkpilgqppvsqtisgflepasleeVAPLLARSNLLITRDIEWANLVLGfeqenryavvdvcypqspvgfirEQSNVIARQLLRLRRPFVAYITDgmgnelfrvrrpfwwITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLgnkqfavvenpgfwnwtftlkdenGEVLAQIDRDWRGFGFEIFTDAGQYVIrfgsadpssktGLASVIQELevtrpltlSERAVAVALAISLdndyfsrhggwgipfvavge
MMGSRYLSKVEKILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQSKRCFGHDVRGDAQLNRDFLVqlwisdrrrqssrekrrkvvryknidesiydprpfgrwFSGATVTEEKPLDKGKPILGQPPVSQTISGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAyitdgmgnelfrVRRPFWWITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAVGE
MMGSRYLSKVEKILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQSKRCFGHDVRGDAQLNRDFLVQLWISDrrrqssrekrrkvvrYKNIDESIYDPRPFGRWFSGATVTEEKPLDKGKPILGQPPVSQTISGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIYAEINGKEvgvvhrrwhlwrrvYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAVGE
************ILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQSKRCFGHDVRGDAQLNRDFLVQLWIS*************VVRYKNIDESIYDPRPFGRWFSGATV*********************ISGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSAD****TGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAV**
**********EKILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYK*************************************************************************************************PASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTG*****QELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGI*FVAV**
*********VEKILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQSKRCFGHDVRGDAQLNRDFLVQLWISDR**********KVVRYKNIDESIYDPRPFGRWFSGATVTEEKPLDKGKPILGQPPVSQTISGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAVGE
****RYLSKVEKILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQS**********DAQLNRDFLVQLWISDRRRQSSR******************************************ILGQP******SGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAV**
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MMGSRYLSKVEKILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQSKRCFGHDVRGDAQLNRDFLVQLWISDRRRQSSREKRRKVVRYKNIDESIYDPRPFGRWFSGATVTEEKPLDKGKPILGQPPVSQTISGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAVGE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query404 2.2.26 [Sep-21-2011]
Q9UT84381 Phospholipid scramblase f yes no 0.621 0.658 0.328 6e-34
P47140327 Altered inheritance rate yes no 0.544 0.672 0.363 9e-34
Q9JJ00328 Phospholipid scramblase 1 yes no 0.393 0.484 0.272 2e-08
P58195335 Phospholipid scramblase 1 yes no 0.396 0.477 0.265 8e-08
Q3ZBG9293 Phospholipid scramblase 2 no no 0.465 0.641 0.225 3e-07
Q9NRY6295 Phospholipid scramblase 3 yes no 0.477 0.654 0.245 3e-07
Q6QBQ4296 Phospholipid scramblase 3 no no 0.477 0.652 0.25 3e-06
O15162318 Phospholipid scramblase 1 no no 0.391 0.496 0.254 3e-06
Q9JIZ9296 Phospholipid scramblase 3 no no 0.477 0.652 0.241 8e-06
Q9NRQ2329 Phospholipid scramblase 4 no no 0.428 0.525 0.253 8e-06
>sp|Q9UT84|YIP6_SCHPO Phospholipid scramblase family protein C343.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC343.06c PE=3 SV=1 Back     alignment and function desciption
 Score =  145 bits (365), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 147/283 (51%), Gaps = 32/283 (11%)

Query: 148 LDKGKPILGQPPVSQTISGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYA 207
           +D    ++ Q P + + +G +   S    APLL++  L++ R +E  N+ LG+EQ NRY 
Sbjct: 44  IDATAKVVSQEPAAISSTGAIPLNS--PAAPLLSQDVLIVERQLEMMNVFLGYEQANRYV 101

Query: 208 VVDVCYPQSPVGFIREQS-----NVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWIT 262
           +++       +G+I EQ      + ++RQ     R F A + D  G  + ++ RPF WI 
Sbjct: 102 ILN--QQGQHLGYIAEQGASSILSSLSRQFFHTHRAFKADVMDSNGQLVLQLNRPFSWIN 159

Query: 263 SSI------YAEINGKEVGVVHRRWHLWRRVYDLYLGNK----QFAVVENPGFWNWTFTL 312
           S +      Y++ +   VG V ++WHLWRR Y+L+L  +    QFA ++     +W F L
Sbjct: 160 SRLQIHSIDYSKFSSTLVGEVLQKWHLWRRRYELFLAKRSMFEQFAKIDER-VLSWEFLL 218

Query: 313 KDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRF-------GSADPSSKTGLASVIQELEV 365
           ++E   +L  + R++ G   E FTD G YV+RF       GS + +     A  I     
Sbjct: 219 RNEQDRILGSVSRNFMGLPREFFTDTGNYVLRFTSTSAANGSVNENQLLQAAHGIANDVC 278

Query: 366 TRPLTLSERAVAVALAISLDNDYFSR-HG----GWGIPFVAVG 403
            R ++L ERAV +  A+++D DYFSR HG    G  IPF+  G
Sbjct: 279 ARDMSLEERAVMLGSAVTIDFDYFSRIHGGPALGLNIPFMFGG 321





Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|P47140|AIM25_YEAST Altered inheritance rate of mitochondria protein 25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIM25 PE=1 SV=1 Back     alignment and function description
>sp|Q9JJ00|PLS1_MOUSE Phospholipid scramblase 1 OS=Mus musculus GN=Plscr1 PE=2 SV=1 Back     alignment and function description
>sp|P58195|PLS1_RAT Phospholipid scramblase 1 OS=Rattus norvegicus GN=Plscr1 PE=1 SV=1 Back     alignment and function description
>sp|Q3ZBG9|PLS2_BOVIN Phospholipid scramblase 2 OS=Bos taurus GN=PLSCR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9NRY6|PLS3_HUMAN Phospholipid scramblase 3 OS=Homo sapiens GN=PLSCR3 PE=1 SV=2 Back     alignment and function description
>sp|Q6QBQ4|PLS3_RAT Phospholipid scramblase 3 OS=Rattus norvegicus GN=Plscr3 PE=2 SV=1 Back     alignment and function description
>sp|O15162|PLS1_HUMAN Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9JIZ9|PLS3_MOUSE Phospholipid scramblase 3 OS=Mus musculus GN=Plscr3 PE=1 SV=1 Back     alignment and function description
>sp|Q9NRQ2|PLS4_HUMAN Phospholipid scramblase 4 OS=Homo sapiens GN=PLSCR4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
359490010412 PREDICTED: altered inheritance rate of m 0.935 0.917 0.677 1e-156
147782520421 hypothetical protein VITISV_019219 [Viti 0.913 0.876 0.668 1e-150
224133602345 predicted protein [Populus trichocarpa] 0.769 0.901 0.753 1e-139
255557955400 conserved hypothetical protein [Ricinus 0.799 0.807 0.743 1e-136
357474213350 Altered inheritance rate of mitochondria 0.754 0.871 0.741 1e-134
449458297366 PREDICTED: altered inheritance rate of m 0.784 0.866 0.732 1e-134
356543498349 PREDICTED: altered inheritance rate of m 0.772 0.893 0.721 1e-133
297835810390 predicted protein [Arabidopsis lyrata su 0.787 0.815 0.685 1e-129
388504582280 unknown [Lotus japonicus] 0.621 0.896 0.869 1e-128
21536494392 unknown [Arabidopsis thaliana] 0.774 0.798 0.682 1e-127
>gi|359490010|ref|XP_002275133.2| PREDICTED: altered inheritance rate of mitochondria protein 25-like [Vitis vinifera] gi|297737362|emb|CBI26563.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/422 (67%), Positives = 327/422 (77%), Gaps = 44/422 (10%)

Query: 4   SRYLSKVEKILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVL 63
           S++  +  K+ +SC    N   NG+         QP+  +T+            L  +VL
Sbjct: 14  SKFTQETSKLHASCYLAVNRHLNGL---------QPQ--ATL------------LEQAVL 50

Query: 64  ERSLVYRYK------GSFFQSK-------RCFGHDVRGDAQLNRDFLVQLWISDRRRQSS 110
            R++ +R K      G+F +S        R FG    GD Q++RDFLVQLW+ DR+ + S
Sbjct: 51  ARNVAWRSKLPSCSEGNFLRSNLSAISISRQFGQSAGGDPQMDRDFLVQLWVVDRKAKGS 110

Query: 111 REKR-RKVVRYKNIDESIYDPR-----PFGRWFSGATVTEEKPLDKGKPILGQPPVSQTI 164
           R KR RK V+Y    E +Y  +     PFGRWFSGA+VT+EKP ++ KP+L QPP+SQ++
Sbjct: 111 RGKRKRKTVKYGADSEIVYGNQLSSQFPFGRWFSGASVTKEKPSEQEKPVLKQPPLSQSV 170

Query: 165 SGFLEPASLEE--VAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIR 222
           +GFLEPAS EE  VAPLLARSNLLITRDIEWANLVLGFEQENRYA+VDVCYPQSPVGFIR
Sbjct: 171 TGFLEPASPEEARVAPLLARSNLLITRDIEWANLVLGFEQENRYAMVDVCYPQSPVGFIR 230

Query: 223 EQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWH 282
           EQSNVI RQLLRLRRPFVAYI D MGNELFRVRRPFWWITSSIYAE+NGKEVGVVHRRWH
Sbjct: 231 EQSNVIMRQLLRLRRPFVAYIVDAMGNELFRVRRPFWWITSSIYAEVNGKEVGVVHRRWH 290

Query: 283 LWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYV 342
           LWRRVYDLYLGNKQFA VENPGFWNWTFTLKD +G+VLA+IDRDWRGFGFEIFTDAGQYV
Sbjct: 291 LWRRVYDLYLGNKQFAAVENPGFWNWTFTLKDIDGKVLAEIDRDWRGFGFEIFTDAGQYV 350

Query: 343 IRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAV 402
           IRFGS+DP+SK+G A  IQELEV RPLTLSERAVAVALA+SLDNDYFSRHGGWGIPFVAV
Sbjct: 351 IRFGSSDPNSKSGPAKAIQELEVVRPLTLSERAVAVALAVSLDNDYFSRHGGWGIPFVAV 410

Query: 403 GE 404
            E
Sbjct: 411 DE 412




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782520|emb|CAN68431.1| hypothetical protein VITISV_019219 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133602|ref|XP_002321615.1| predicted protein [Populus trichocarpa] gi|222868611|gb|EEF05742.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255557955|ref|XP_002520006.1| conserved hypothetical protein [Ricinus communis] gi|223540770|gb|EEF42330.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357474213|ref|XP_003607391.1| Altered inheritance rate of mitochondria protein [Medicago truncatula] gi|355508446|gb|AES89588.1| Altered inheritance rate of mitochondria protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449458297|ref|XP_004146884.1| PREDICTED: altered inheritance rate of mitochondria protein 25-like [Cucumis sativus] gi|449518823|ref|XP_004166435.1| PREDICTED: altered inheritance rate of mitochondria protein 25-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543498|ref|XP_003540197.1| PREDICTED: altered inheritance rate of mitochondria protein 25-like [Glycine max] Back     alignment and taxonomy information
>gi|297835810|ref|XP_002885787.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331627|gb|EFH62046.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388504582|gb|AFK40357.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|21536494|gb|AAM60826.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
TAIR|locus:2044968392 AT2G04940 "AT2G04940" [Arabido 0.774 0.798 0.640 3.6e-105
POMBASE|SPAC343.06c381 SPAC343.06c "phospholipid scra 0.668 0.708 0.295 3.2e-26
CGD|CAL0002913345 orf19.3929 [Candida albicans ( 0.430 0.504 0.335 3e-18
UNIPROTKB|Q5AK91345 CaO19.3929 "Putative uncharact 0.430 0.504 0.335 3e-18
SGD|S000003861327 AIM25 "Putative protein of unk 0.252 0.311 0.385 5.2e-12
FB|FBgn0035390263 scramb2 "scramblase 2" [Drosop 0.193 0.296 0.375 6.4e-08
WB|WBGene00019530301 scrm-8 [Caenorhabditis elegans 0.220 0.295 0.344 4.7e-06
UNIPROTKB|Q21319301 scrm-8 "Protein SCRM-8" [Caeno 0.220 0.295 0.344 4.7e-06
MGI|MGI:893575328 Plscr1 "phospholipid scramblas 0.205 0.253 0.295 8.7e-05
UNIPROTKB|Q21318303 scrm-5 "Protein SCRM-5" [Caeno 0.452 0.603 0.244 9.7e-05
TAIR|locus:2044968 AT2G04940 "AT2G04940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 216/337 (64%), Positives = 249/337 (73%)

Query:    73 GSFFQSKRCF--GHDVRGDAQLNRDFLVQLWISDXXXXXXXXXXXXXXX-YKNIDESIYD 129
             GS F   RCF  G D      L+R FL QLW++D                ++N  E+  D
Sbjct:    75 GSVF---RCFCSGSDT-SPPSLDRKFLAQLWVADKKKLKAMEKRYKKASKHRNYTEN--D 128

Query:   130 PRPFGRWFSGATVTEEKPLDKGKPILGQPPVSQTISGFLEPASLEE--VAPLLARSNLLI 187
                F   F   TV         +P + QPPVSQ++SG L+P + +E  +A LLARSNLL+
Sbjct:   129 G--FDVHFE--TV---------EPTVEQPPVSQSMSGLLKPKTSDEAKIATLLARSNLLV 175

Query:   188 TRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGM 247
             TRDIEWANLVLGFEQENRY VVDVCYP++PVG IREQSN++ARQLLR RRPFVA ITD +
Sbjct:   176 TRDIEWANLVLGFEQENRYIVVDVCYPEAPVGSIREQSNLLARQLLRTRRPFVASITDAL 235

Query:   248 GNELFRVRRPFWWITSSIYAEINGKEXXXXXXXXXXXXXXYDLYLGNKQFAVVENPGFWN 307
             GNELFRVRRPFWW+TSSIYAEI+G+E              YDLYLGN QFAVVENPGFWN
Sbjct:   236 GNELFRVRRPFWWLTSSIYAEIDGEEIGVVHRRWHLWRRIYDLYLGNNQFAVVENPGFWN 295

Query:   308 WTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTR 367
             WTFT+KD +GEVLAQIDRDWRGFGFEIFTDAGQYVIRFG AD ++KTG A++++ELEV R
Sbjct:   296 WTFTVKDADGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGKADAAAKTGPATLVEELEVKR 355

Query:   368 PLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAVGE 404
             PLTLSERAV + LAISLDNDYFSRHGGWGIPF+AVGE
Sbjct:   356 PLTLSERAVVLTLAISLDNDYFSRHGGWGIPFMAVGE 392




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
POMBASE|SPAC343.06c SPAC343.06c "phospholipid scramblase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0002913 orf19.3929 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AK91 CaO19.3929 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000003861 AIM25 "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
FB|FBgn0035390 scramb2 "scramblase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00019530 scrm-8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q21319 scrm-8 "Protein SCRM-8" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:893575 Plscr1 "phospholipid scramblase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q21318 scrm-5 "Protein SCRM-5" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
pfam03803223 pfam03803, Scramblase, Scramblase 6e-77
>gnl|CDD|217740 pfam03803, Scramblase, Scramblase Back     alignment and domain information
 Score =  237 bits (606), Expect = 6e-77
 Identities = 83/254 (32%), Positives = 113/254 (44%), Gaps = 47/254 (18%)

Query: 153 PILGQPPVSQTISGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVC 212
              GQPP +        PA LE    LL    +L+ + IE   +  GFE +NRY + +V 
Sbjct: 2   SGPGQPPAN-------CPAGLE---YLLQLDTILVHQQIEPLEIFTGFETKNRYVIKNVN 51

Query: 213 YPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWI-----TSSIYA 267
               P+ +  E+SN  ARQ     RPFV  ITD  GNE+  ++RPF        +     
Sbjct: 52  GQ--PLYYAMERSNCCARQCCGTHRPFVMRITDNFGNEVLTLKRPFRCCSCCCPSCLQEQ 109

Query: 268 EIN---GKEVGVVHRRWHLWRRVYDLYLGNK-QFAVVENPGF-----WNWTFTLKDENG- 317
           EI    G  +G V + WHLWR  Y+L   +  Q  ++  P        +W F +K  +G 
Sbjct: 110 EIQAPPGTTIGEVLQTWHLWRPNYELQDADGNQVLLIFGPCCKCSCGGDWDFPVKTADGS 169

Query: 318 EVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVA 377
           EV+  I R W G G E FTDA  YV+RF                       L +  +AV 
Sbjct: 170 EVVGSISRKWGGLGREAFTDADTYVVRFPL--------------------DLDVKLKAVL 209

Query: 378 VALAISLDNDYFSR 391
           +  A  +D DYF R
Sbjct: 210 LGAAFLIDFDYFER 223


Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury. Length = 223

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 404
PF03803221 Scramblase: Scramblase ; InterPro: IPR005552 Scram 100.0
KOG0621292 consensus Phospholipid scramblase [Cell wall/membr 100.0
COG4894159 Uncharacterized conserved protein [Function unknow 99.79
PF04525187 Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa 99.57
PF03803221 Scramblase: Scramblase ; InterPro: IPR005552 Scram 97.25
PF04525187 Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa 95.58
COG4894159 Uncharacterized conserved protein [Function unknow 94.74
KOG0621292 consensus Phospholipid scramblase [Cell wall/membr 90.75
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site Back     alignment and domain information
Probab=100.00  E-value=1.5e-56  Score=418.29  Aligned_cols=202  Identities=29%  Similarity=0.515  Sum_probs=188.8

Q ss_pred             cCCCCccCchhhhCCCeEEEEeeceecccccCCCCCceEEEEcCCCCCceeEEEEeechhhhHhhhcCCCCeEEEEEeCC
Q 015568          168 LEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGM  247 (404)
Q Consensus       168 p~P~~P~GLe~Ll~ld~LlIkQkiEllEv~tgfE~~NrY~I~d~~~~Gq~Vy~a~EeS~~~~R~ccg~~RpF~m~I~D~~  247 (404)
                      +.|.+|+|||+|.++++|+|+|++|++|++++||++|+|.|+|+.  |++||++.|+++++.|+||+++|||+|+|+|+.
T Consensus         7 ~~~~~p~gLe~L~~~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~--g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~   84 (221)
T PF03803_consen    7 TPPNCPPGLEYLAGLDQLLIKQQIEPLEIFTGFETPNRYDIKNPN--GQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNY   84 (221)
T ss_pred             CCCCCChHHHHHhCCCEEEEEEEEEEeceecccccCceEEEECCC--CCEEEEEEEeCcceeeeecCCCCCEEEEEEecC
Confidence            345679999999999999999999999999999999999999999  999999999999999999999999999999999


Q ss_pred             CCeEEEEEeccceece--eE----EE-eeCCeEEEEEEeeecceeeEEEEEeCCcceE-EEECCCe-----eeeeeEEEc
Q 015568          248 GNELFRVRRPFWWITS--SI----YA-EINGKEVGVVHRRWHLWRRVYDLYLGNKQFA-VVENPGF-----WNWTFTLKD  314 (404)
Q Consensus       248 G~eV~tI~RPf~c~~~--~c----~v-E~~G~~IG~V~Q~wsl~~pkF~I~D~ngq~v-~I~GP~c-----~d~~F~I~d  314 (404)
                      |++|++++||++|+.|  ||    .+ .++|++||+|+|+|++|+++|+|+|++++.+ .|+||||     ++|+|+|+|
T Consensus        85 g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~  164 (221)
T PF03803_consen   85 GREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKD  164 (221)
T ss_pred             CCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCCceEEEEeCCcceeccccceeeeeec
Confidence            9999999999998652  22    23 2599999999999999999999999999876 9999976     589999999


Q ss_pred             CCCCEEEEEEeeeccccceeeccCceEEEEEccCCCCCccccchhhhhccccCCCChhHHHHHHHHHHhhhhhhhcc
Q 015568          315 ENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSR  391 (404)
Q Consensus       315 ~dG~~VG~IsKkW~G~~rE~FTdaDnY~I~Fp~~~~~~~~~~~~~~~dldV~rpLdle~KAlLLgAaIlIDymyFE~  391 (404)
                      .+|+.||+|+|+|+|+.+|+||++|+|.|+||+                    +||+++||+||||+|+|||||||+
T Consensus       165 ~~~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~--------------------~l~~~~Kalll~a~~liD~~~Fe~  221 (221)
T PF03803_consen  165 PNGQEVGSITKKWSGFCRELFTDADNFVIEFPP--------------------DLDVEQKALLLGAAFLIDYMYFER  221 (221)
T ss_pred             ccCcEEEEEEEecCCcchhhccccceEEEEcCC--------------------CCCHHHHHHHHHHHHHhhhhhhcC
Confidence            999999999999999999999999999999996                    478899999999999999999996



Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG4894 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins Back     alignment and domain information
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site Back     alignment and domain information
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins Back     alignment and domain information
>COG4894 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 42/322 (13%), Positives = 105/322 (32%), Gaps = 65/322 (20%)

Query: 34  LGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQSKRCFGHDVRGDAQLN 93
           L VF+  +      + ++    + L+   ++   +   K +   + R F   +    ++ 
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 94  RDFLVQL------WISDRRRQSSREKRRKVVRYKNIDESIY-DPRPFGRWFSGATVTEEK 146
           + F+ ++      ++    +   R+       Y    + +Y D + F ++     V+  +
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQ 135

Query: 147 PLDKGKPILGQPPVSQTIS-----GF----LEPASLEEVAPLLARSNLLITR---DIEWA 194
           P  K +  L +   ++ +      G     +        A  +  S  +  +    I W 
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWV--------ALDVCLSYKVQCKMDFKIFWL 187

Query: 195 NL-------VLGFEQENRYAVVDVCYPQSPVGF--IREQSNVIARQLLRL--RRPFV-AY 242
           NL        +    +     +D  +         I+ + + I  +L RL   +P+    
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 243 -ITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVE 301
            +   + N   +    F          ++ K + +  R     ++V D         +  
Sbjct: 248 LVLLNVQNA--KAWNAF---------NLSCK-ILLTTRF----KQVTDFLSAATTTHISL 291

Query: 302 NPGFWNWTFTLKDENGEVLAQI 323
           +    + T T  DE   +L + 
Sbjct: 292 DH--HSMTLT-PDEVKSLLLKY 310


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
1zxu_A217 AT5G01750 protein; PFAM PF01167, TULP, structural 99.92
1zxu_A217 AT5G01750 protein; PFAM PF01167, TULP, structural 95.51
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Back     alignment and structure
Probab=99.92  E-value=1.8e-24  Score=201.51  Aligned_cols=172  Identities=14%  Similarity=0.170  Sum_probs=121.5

Q ss_pred             hhhh-CCCeEEEEeeceecccccCCCCCceEEEEcCCCCCceeEEEEeechhhhHhhhcCCCCeEEEEEeCCCCeEEEEE
Q 015568          177 APLL-ARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVR  255 (404)
Q Consensus       177 e~Ll-~ld~LlIkQkiEllEv~tgfE~~NrY~I~d~~~~Gq~Vy~a~EeS~~~~R~ccg~~RpF~m~I~D~~G~eV~tI~  255 (404)
                      +++. .-..|+|+|++..+       ..|+|.|+|++  |+.||++.++. +        .++++++|+|+.|++|++|+
T Consensus        31 ~~~~~~~~~l~vkqk~~~~-------~~~~f~V~D~~--G~~vf~V~~~~-~--------~~~~~~~l~D~~G~~l~~i~   92 (217)
T 1zxu_A           31 KYCAPYPIDMAIVRKMMSL-------TDGNFVITDVN--GNLLFKVKEPV-F--------GLHDKRVLLDGSGTPVVTLR   92 (217)
T ss_dssp             GGBCSSCEEEEEECC------------CCCEEEEETT--SCEEEEEECSS-T--------TCCSEEEEECTTSCEEEEEE
T ss_pred             cccCCCCcEEEEEEEEeEe-------eCCCEEEEeCC--CCEEEEEEccc-c--------CCCCEEEEECCCCCEEEEEE
Confidence            4555 46678999997543       25799999999  99999998863 1        36889999999999999999


Q ss_pred             eccceeceeEEEeeCC-----eEEEEEEee--ecceeeEEEEEeCCc-----ceEEEECCCeeeeeeEEEcCC-CCEEEE
Q 015568          256 RPFWWITSSIYAEING-----KEVGVVHRR--WHLWRRVYDLYLGNK-----QFAVVENPGFWNWTFTLKDEN-GEVLAQ  322 (404)
Q Consensus       256 RPf~c~~~~c~vE~~G-----~~IG~V~Q~--wsl~~pkF~I~D~ng-----q~v~I~GP~c~d~~F~I~d~d-G~~VG~  322 (404)
                      |+..++.+++.++.++     +++|+|+++  |+ ++++|+|.+.++     ..+.|+|+ +++++|+|++.+ |++||+
T Consensus        93 rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~-~~~~~~V~~~~~~~~~~~~~~I~G~-~~~~~f~I~~~~~~~~Va~  170 (217)
T 1zxu_A           93 EKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQ-LKTKLDVFLGHNKDEKRCDFRVKGS-WLERSCVVYAGESDAIVAQ  170 (217)
T ss_dssp             C------CEEEEEETTCCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESC-TTTTCCEEEETTTCCEEEE
T ss_pred             ccccccCcEEEEEcCCCCCCCcEEEEEEEecccc-CCCeEEEEECCCCCCCceEEEEEEe-EeCCEEEEEECCCCEEEEE
Confidence            9977666666665432     479999998  88 899999998752     24699999 789999999987 689999


Q ss_pred             EEeeeccccceeeccCceEEEEEccCCCCCccccchhhhhccccCCCChhHHHHHHHHHHhhhhhhhccCC
Q 015568          323 IDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHG  393 (404)
Q Consensus       323 IsKkW~G~~rE~FTdaDnY~I~Fp~~~~~~~~~~~~~~~dldV~rpLdle~KAlLLgAaIlIDymyFE~~~  393 (404)
                      |+|+|.  .+++|+++|+|.|+++++                    +|   .+++||++++||+|++++++
T Consensus       171 I~kk~~--~~~~~~~~D~y~l~V~p~--------------------~D---~aliialvv~iD~~~~~~~~  216 (217)
T 1zxu_A          171 MHRKHT--VQSVFLGKDNFSVTVYPN--------------------VD---YAFIASLVVILDDVNREDRA  216 (217)
T ss_dssp             EEEC----------CBCSEEEEECTT--------------------SB---HHHHHHHHHHHHHHHC----
T ss_pred             EEeeee--ccccccCCcEEEEEECCC--------------------CC---HHHHHHHHHHHHHhhhhccC
Confidence            999997  689999999999999752                    22   49999999999999998753



>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
d2q4ma1189 Hypothetical protein At5g01750 {Thale cress (Arabi 99.66
d2q4ma1189 Hypothetical protein At5g01750 {Thale cress (Arabi 95.97