Citrus Sinensis ID: 015568
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 404 | ||||||
| 359490010 | 412 | PREDICTED: altered inheritance rate of m | 0.935 | 0.917 | 0.677 | 1e-156 | |
| 147782520 | 421 | hypothetical protein VITISV_019219 [Viti | 0.913 | 0.876 | 0.668 | 1e-150 | |
| 224133602 | 345 | predicted protein [Populus trichocarpa] | 0.769 | 0.901 | 0.753 | 1e-139 | |
| 255557955 | 400 | conserved hypothetical protein [Ricinus | 0.799 | 0.807 | 0.743 | 1e-136 | |
| 357474213 | 350 | Altered inheritance rate of mitochondria | 0.754 | 0.871 | 0.741 | 1e-134 | |
| 449458297 | 366 | PREDICTED: altered inheritance rate of m | 0.784 | 0.866 | 0.732 | 1e-134 | |
| 356543498 | 349 | PREDICTED: altered inheritance rate of m | 0.772 | 0.893 | 0.721 | 1e-133 | |
| 297835810 | 390 | predicted protein [Arabidopsis lyrata su | 0.787 | 0.815 | 0.685 | 1e-129 | |
| 388504582 | 280 | unknown [Lotus japonicus] | 0.621 | 0.896 | 0.869 | 1e-128 | |
| 21536494 | 392 | unknown [Arabidopsis thaliana] | 0.774 | 0.798 | 0.682 | 1e-127 |
| >gi|359490010|ref|XP_002275133.2| PREDICTED: altered inheritance rate of mitochondria protein 25-like [Vitis vinifera] gi|297737362|emb|CBI26563.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 286/422 (67%), Positives = 327/422 (77%), Gaps = 44/422 (10%)
Query: 4 SRYLSKVEKILSSCSATANNRHNGIFKTLKLGVFQPEYFSTMSLQHLERFGTNGLTDSVL 63
S++ + K+ +SC N NG+ QP+ +T+ L +VL
Sbjct: 14 SKFTQETSKLHASCYLAVNRHLNGL---------QPQ--ATL------------LEQAVL 50
Query: 64 ERSLVYRYK------GSFFQSK-------RCFGHDVRGDAQLNRDFLVQLWISDRRRQSS 110
R++ +R K G+F +S R FG GD Q++RDFLVQLW+ DR+ + S
Sbjct: 51 ARNVAWRSKLPSCSEGNFLRSNLSAISISRQFGQSAGGDPQMDRDFLVQLWVVDRKAKGS 110
Query: 111 REKR-RKVVRYKNIDESIYDPR-----PFGRWFSGATVTEEKPLDKGKPILGQPPVSQTI 164
R KR RK V+Y E +Y + PFGRWFSGA+VT+EKP ++ KP+L QPP+SQ++
Sbjct: 111 RGKRKRKTVKYGADSEIVYGNQLSSQFPFGRWFSGASVTKEKPSEQEKPVLKQPPLSQSV 170
Query: 165 SGFLEPASLEE--VAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIR 222
+GFLEPAS EE VAPLLARSNLLITRDIEWANLVLGFEQENRYA+VDVCYPQSPVGFIR
Sbjct: 171 TGFLEPASPEEARVAPLLARSNLLITRDIEWANLVLGFEQENRYAMVDVCYPQSPVGFIR 230
Query: 223 EQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWH 282
EQSNVI RQLLRLRRPFVAYI D MGNELFRVRRPFWWITSSIYAE+NGKEVGVVHRRWH
Sbjct: 231 EQSNVIMRQLLRLRRPFVAYIVDAMGNELFRVRRPFWWITSSIYAEVNGKEVGVVHRRWH 290
Query: 283 LWRRVYDLYLGNKQFAVVENPGFWNWTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYV 342
LWRRVYDLYLGNKQFA VENPGFWNWTFTLKD +G+VLA+IDRDWRGFGFEIFTDAGQYV
Sbjct: 291 LWRRVYDLYLGNKQFAAVENPGFWNWTFTLKDIDGKVLAEIDRDWRGFGFEIFTDAGQYV 350
Query: 343 IRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAV 402
IRFGS+DP+SK+G A IQELEV RPLTLSERAVAVALA+SLDNDYFSRHGGWGIPFVAV
Sbjct: 351 IRFGSSDPNSKSGPAKAIQELEVVRPLTLSERAVAVALAVSLDNDYFSRHGGWGIPFVAV 410
Query: 403 GE 404
E
Sbjct: 411 DE 412
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147782520|emb|CAN68431.1| hypothetical protein VITISV_019219 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224133602|ref|XP_002321615.1| predicted protein [Populus trichocarpa] gi|222868611|gb|EEF05742.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255557955|ref|XP_002520006.1| conserved hypothetical protein [Ricinus communis] gi|223540770|gb|EEF42330.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|357474213|ref|XP_003607391.1| Altered inheritance rate of mitochondria protein [Medicago truncatula] gi|355508446|gb|AES89588.1| Altered inheritance rate of mitochondria protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449458297|ref|XP_004146884.1| PREDICTED: altered inheritance rate of mitochondria protein 25-like [Cucumis sativus] gi|449518823|ref|XP_004166435.1| PREDICTED: altered inheritance rate of mitochondria protein 25-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356543498|ref|XP_003540197.1| PREDICTED: altered inheritance rate of mitochondria protein 25-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297835810|ref|XP_002885787.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331627|gb|EFH62046.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|388504582|gb|AFK40357.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
| >gi|21536494|gb|AAM60826.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 404 | ||||||
| TAIR|locus:2044968 | 392 | AT2G04940 "AT2G04940" [Arabido | 0.774 | 0.798 | 0.640 | 3.6e-105 | |
| POMBASE|SPAC343.06c | 381 | SPAC343.06c "phospholipid scra | 0.668 | 0.708 | 0.295 | 3.2e-26 | |
| CGD|CAL0002913 | 345 | orf19.3929 [Candida albicans ( | 0.430 | 0.504 | 0.335 | 3e-18 | |
| UNIPROTKB|Q5AK91 | 345 | CaO19.3929 "Putative uncharact | 0.430 | 0.504 | 0.335 | 3e-18 | |
| SGD|S000003861 | 327 | AIM25 "Putative protein of unk | 0.252 | 0.311 | 0.385 | 5.2e-12 | |
| FB|FBgn0035390 | 263 | scramb2 "scramblase 2" [Drosop | 0.193 | 0.296 | 0.375 | 6.4e-08 | |
| WB|WBGene00019530 | 301 | scrm-8 [Caenorhabditis elegans | 0.220 | 0.295 | 0.344 | 4.7e-06 | |
| UNIPROTKB|Q21319 | 301 | scrm-8 "Protein SCRM-8" [Caeno | 0.220 | 0.295 | 0.344 | 4.7e-06 | |
| MGI|MGI:893575 | 328 | Plscr1 "phospholipid scramblas | 0.205 | 0.253 | 0.295 | 8.7e-05 | |
| UNIPROTKB|Q21318 | 303 | scrm-5 "Protein SCRM-5" [Caeno | 0.452 | 0.603 | 0.244 | 9.7e-05 |
| TAIR|locus:2044968 AT2G04940 "AT2G04940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 216/337 (64%), Positives = 249/337 (73%)
Query: 73 GSFFQSKRCF--GHDVRGDAQLNRDFLVQLWISDXXXXXXXXXXXXXXX-YKNIDESIYD 129
GS F RCF G D L+R FL QLW++D ++N E+ D
Sbjct: 75 GSVF---RCFCSGSDT-SPPSLDRKFLAQLWVADKKKLKAMEKRYKKASKHRNYTEN--D 128
Query: 130 PRPFGRWFSGATVTEEKPLDKGKPILGQPPVSQTISGFLEPASLEE--VAPLLARSNLLI 187
F F TV +P + QPPVSQ++SG L+P + +E +A LLARSNLL+
Sbjct: 129 G--FDVHFE--TV---------EPTVEQPPVSQSMSGLLKPKTSDEAKIATLLARSNLLV 175
Query: 188 TRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGM 247
TRDIEWANLVLGFEQENRY VVDVCYP++PVG IREQSN++ARQLLR RRPFVA ITD +
Sbjct: 176 TRDIEWANLVLGFEQENRYIVVDVCYPEAPVGSIREQSNLLARQLLRTRRPFVASITDAL 235
Query: 248 GNELFRVRRPFWWITSSIYAEINGKEXXXXXXXXXXXXXXYDLYLGNKQFAVVENPGFWN 307
GNELFRVRRPFWW+TSSIYAEI+G+E YDLYLGN QFAVVENPGFWN
Sbjct: 236 GNELFRVRRPFWWLTSSIYAEIDGEEIGVVHRRWHLWRRIYDLYLGNNQFAVVENPGFWN 295
Query: 308 WTFTLKDENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTR 367
WTFT+KD +GEVLAQIDRDWRGFGFEIFTDAGQYVIRFG AD ++KTG A++++ELEV R
Sbjct: 296 WTFTVKDADGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGKADAAAKTGPATLVEELEVKR 355
Query: 368 PLTLSERAVAVALAISLDNDYFSRHGGWGIPFVAVGE 404
PLTLSERAV + LAISLDNDYFSRHGGWGIPF+AVGE
Sbjct: 356 PLTLSERAVVLTLAISLDNDYFSRHGGWGIPFMAVGE 392
|
|
| POMBASE|SPAC343.06c SPAC343.06c "phospholipid scramblase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0002913 orf19.3929 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5AK91 CaO19.3929 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| SGD|S000003861 AIM25 "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0035390 scramb2 "scramblase 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00019530 scrm-8 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q21319 scrm-8 "Protein SCRM-8" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:893575 Plscr1 "phospholipid scramblase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q21318 scrm-5 "Protein SCRM-5" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 404 | |||
| pfam03803 | 223 | pfam03803, Scramblase, Scramblase | 6e-77 |
| >gnl|CDD|217740 pfam03803, Scramblase, Scramblase | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 6e-77
Identities = 83/254 (32%), Positives = 113/254 (44%), Gaps = 47/254 (18%)
Query: 153 PILGQPPVSQTISGFLEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVC 212
GQPP + PA LE LL +L+ + IE + GFE +NRY + +V
Sbjct: 2 SGPGQPPAN-------CPAGLE---YLLQLDTILVHQQIEPLEIFTGFETKNRYVIKNVN 51
Query: 213 YPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVRRPFWWI-----TSSIYA 267
P+ + E+SN ARQ RPFV ITD GNE+ ++RPF +
Sbjct: 52 GQ--PLYYAMERSNCCARQCCGTHRPFVMRITDNFGNEVLTLKRPFRCCSCCCPSCLQEQ 109
Query: 268 EIN---GKEVGVVHRRWHLWRRVYDLYLGNK-QFAVVENPGF-----WNWTFTLKDENG- 317
EI G +G V + WHLWR Y+L + Q ++ P +W F +K +G
Sbjct: 110 EIQAPPGTTIGEVLQTWHLWRPNYELQDADGNQVLLIFGPCCKCSCGGDWDFPVKTADGS 169
Query: 318 EVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVA 377
EV+ I R W G G E FTDA YV+RF L + +AV
Sbjct: 170 EVVGSISRKWGGLGREAFTDADTYVVRFPL--------------------DLDVKLKAVL 209
Query: 378 VALAISLDNDYFSR 391
+ A +D DYF R
Sbjct: 210 LGAAFLIDFDYFER 223
|
Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury. Length = 223 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 404 | |||
| PF03803 | 221 | Scramblase: Scramblase ; InterPro: IPR005552 Scram | 100.0 | |
| KOG0621 | 292 | consensus Phospholipid scramblase [Cell wall/membr | 100.0 | |
| COG4894 | 159 | Uncharacterized conserved protein [Function unknow | 99.79 | |
| PF04525 | 187 | Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa | 99.57 | |
| PF03803 | 221 | Scramblase: Scramblase ; InterPro: IPR005552 Scram | 97.25 | |
| PF04525 | 187 | Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa | 95.58 | |
| COG4894 | 159 | Uncharacterized conserved protein [Function unknow | 94.74 | |
| KOG0621 | 292 | consensus Phospholipid scramblase [Cell wall/membr | 90.75 |
| >PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=418.29 Aligned_cols=202 Identities=29% Similarity=0.515 Sum_probs=188.8
Q ss_pred cCCCCccCchhhhCCCeEEEEeeceecccccCCCCCceEEEEcCCCCCceeEEEEeechhhhHhhhcCCCCeEEEEEeCC
Q 015568 168 LEPASLEEVAPLLARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGM 247 (404)
Q Consensus 168 p~P~~P~GLe~Ll~ld~LlIkQkiEllEv~tgfE~~NrY~I~d~~~~Gq~Vy~a~EeS~~~~R~ccg~~RpF~m~I~D~~ 247 (404)
+.|.+|+|||+|.++++|+|+|++|++|++++||++|+|.|+|+. |++||++.|+++++.|+||+++|||+|+|+|+.
T Consensus 7 ~~~~~p~gLe~L~~~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~--g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~ 84 (221)
T PF03803_consen 7 TPPNCPPGLEYLAGLDQLLIKQQIEPLEIFTGFETPNRYDIKNPN--GQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNY 84 (221)
T ss_pred CCCCCChHHHHHhCCCEEEEEEEEEEeceecccccCceEEEECCC--CCEEEEEEEeCcceeeeecCCCCCEEEEEEecC
Confidence 345679999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCeEEEEEeccceece--eE----EE-eeCCeEEEEEEeeecceeeEEEEEeCCcceE-EEECCCe-----eeeeeEEEc
Q 015568 248 GNELFRVRRPFWWITS--SI----YA-EINGKEVGVVHRRWHLWRRVYDLYLGNKQFA-VVENPGF-----WNWTFTLKD 314 (404)
Q Consensus 248 G~eV~tI~RPf~c~~~--~c----~v-E~~G~~IG~V~Q~wsl~~pkF~I~D~ngq~v-~I~GP~c-----~d~~F~I~d 314 (404)
|++|++++||++|+.| || .+ .++|++||+|+|+|++|+++|+|+|++++.+ .|+|||| ++|+|+|+|
T Consensus 85 g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~ 164 (221)
T PF03803_consen 85 GREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKD 164 (221)
T ss_pred CCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCCceEEEEeCCcceeccccceeeeeec
Confidence 9999999999998652 22 23 2599999999999999999999999999876 9999976 589999999
Q ss_pred CCCCEEEEEEeeeccccceeeccCceEEEEEccCCCCCccccchhhhhccccCCCChhHHHHHHHHHHhhhhhhhcc
Q 015568 315 ENGEVLAQIDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSR 391 (404)
Q Consensus 315 ~dG~~VG~IsKkW~G~~rE~FTdaDnY~I~Fp~~~~~~~~~~~~~~~dldV~rpLdle~KAlLLgAaIlIDymyFE~ 391 (404)
.+|+.||+|+|+|+|+.+|+||++|+|.|+||+ +||+++||+||||+|+|||||||+
T Consensus 165 ~~~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~--------------------~l~~~~Kalll~a~~liD~~~Fe~ 221 (221)
T PF03803_consen 165 PNGQEVGSITKKWSGFCRELFTDADNFVIEFPP--------------------DLDVEQKALLLGAAFLIDYMYFER 221 (221)
T ss_pred ccCcEEEEEEEecCCcchhhccccceEEEEcCC--------------------CCCHHHHHHHHHHHHHhhhhhhcC
Confidence 999999999999999999999999999999996 478899999999999999999996
|
Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury []. |
| >KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >COG4894 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins | Back alignment and domain information |
|---|
| >PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site | Back alignment and domain information |
|---|
| >PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins | Back alignment and domain information |
|---|
| >COG4894 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 404 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 42/322 (13%), Positives = 105/322 (32%), Gaps = 65/322 (20%)
Query: 34 LGVFQPEYFSTMSLQHLERFGTNGLTDSVLERSLVYRYKGSFFQSKRCFGHDVRGDAQLN 93
L VF+ + + ++ + L+ ++ + K + + R F + ++
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 94 RDFLVQL------WISDRRRQSSREKRRKVVRYKNIDESIY-DPRPFGRWFSGATVTEEK 146
+ F+ ++ ++ + R+ Y + +Y D + F ++ V+ +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQ 135
Query: 147 PLDKGKPILGQPPVSQTIS-----GF----LEPASLEEVAPLLARSNLLITR---DIEWA 194
P K + L + ++ + G + A + S + + I W
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWV--------ALDVCLSYKVQCKMDFKIFWL 187
Query: 195 NL-------VLGFEQENRYAVVDVCYPQSPVGF--IREQSNVIARQLLRL--RRPFV-AY 242
NL + + +D + I+ + + I +L RL +P+
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 243 -ITDGMGNELFRVRRPFWWITSSIYAEINGKEVGVVHRRWHLWRRVYDLYLGNKQFAVVE 301
+ + N + F ++ K + + R ++V D +
Sbjct: 248 LVLLNVQNA--KAWNAF---------NLSCK-ILLTTRF----KQVTDFLSAATTTHISL 291
Query: 302 NPGFWNWTFTLKDENGEVLAQI 323
+ + T T DE +L +
Sbjct: 292 DH--HSMTLT-PDEVKSLLLKY 310
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 404 | |||
| 1zxu_A | 217 | AT5G01750 protein; PFAM PF01167, TULP, structural | 99.92 | |
| 1zxu_A | 217 | AT5G01750 protein; PFAM PF01167, TULP, structural | 95.51 |
| >1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=201.51 Aligned_cols=172 Identities=14% Similarity=0.170 Sum_probs=121.5
Q ss_pred hhhh-CCCeEEEEeeceecccccCCCCCceEEEEcCCCCCceeEEEEeechhhhHhhhcCCCCeEEEEEeCCCCeEEEEE
Q 015568 177 APLL-ARSNLLITRDIEWANLVLGFEQENRYAVVDVCYPQSPVGFIREQSNVIARQLLRLRRPFVAYITDGMGNELFRVR 255 (404)
Q Consensus 177 e~Ll-~ld~LlIkQkiEllEv~tgfE~~NrY~I~d~~~~Gq~Vy~a~EeS~~~~R~ccg~~RpF~m~I~D~~G~eV~tI~ 255 (404)
+++. .-..|+|+|++..+ ..|+|.|+|++ |+.||++.++. + .++++++|+|+.|++|++|+
T Consensus 31 ~~~~~~~~~l~vkqk~~~~-------~~~~f~V~D~~--G~~vf~V~~~~-~--------~~~~~~~l~D~~G~~l~~i~ 92 (217)
T 1zxu_A 31 KYCAPYPIDMAIVRKMMSL-------TDGNFVITDVN--GNLLFKVKEPV-F--------GLHDKRVLLDGSGTPVVTLR 92 (217)
T ss_dssp GGBCSSCEEEEEECC------------CCCEEEEETT--SCEEEEEECSS-T--------TCCSEEEEECTTSCEEEEEE
T ss_pred cccCCCCcEEEEEEEEeEe-------eCCCEEEEeCC--CCEEEEEEccc-c--------CCCCEEEEECCCCCEEEEEE
Confidence 4555 46678999997543 25799999999 99999998863 1 36889999999999999999
Q ss_pred eccceeceeEEEeeCC-----eEEEEEEee--ecceeeEEEEEeCCc-----ceEEEECCCeeeeeeEEEcCC-CCEEEE
Q 015568 256 RPFWWITSSIYAEING-----KEVGVVHRR--WHLWRRVYDLYLGNK-----QFAVVENPGFWNWTFTLKDEN-GEVLAQ 322 (404)
Q Consensus 256 RPf~c~~~~c~vE~~G-----~~IG~V~Q~--wsl~~pkF~I~D~ng-----q~v~I~GP~c~d~~F~I~d~d-G~~VG~ 322 (404)
|+..++.+++.++.++ +++|+|+++ |+ ++++|+|.+.++ ..+.|+|+ +++++|+|++.+ |++||+
T Consensus 93 rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~-~~~~~~V~~~~~~~~~~~~~~I~G~-~~~~~f~I~~~~~~~~Va~ 170 (217)
T 1zxu_A 93 EKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQ-LKTKLDVFLGHNKDEKRCDFRVKGS-WLERSCVVYAGESDAIVAQ 170 (217)
T ss_dssp C------CEEEEEETTCCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESC-TTTTCCEEEETTTCCEEEE
T ss_pred ccccccCcEEEEEcCCCCCCCcEEEEEEEecccc-CCCeEEEEECCCCCCCceEEEEEEe-EeCCEEEEEECCCCEEEEE
Confidence 9977666666665432 479999998 88 899999998752 24699999 789999999987 689999
Q ss_pred EEeeeccccceeeccCceEEEEEccCCCCCccccchhhhhccccCCCChhHHHHHHHHHHhhhhhhhccCC
Q 015568 323 IDRDWRGFGFEIFTDAGQYVIRFGSADPSSKTGLASVIQELEVTRPLTLSERAVAVALAISLDNDYFSRHG 393 (404)
Q Consensus 323 IsKkW~G~~rE~FTdaDnY~I~Fp~~~~~~~~~~~~~~~dldV~rpLdle~KAlLLgAaIlIDymyFE~~~ 393 (404)
|+|+|. .+++|+++|+|.|+++++ +| .+++||++++||+|++++++
T Consensus 171 I~kk~~--~~~~~~~~D~y~l~V~p~--------------------~D---~aliialvv~iD~~~~~~~~ 216 (217)
T 1zxu_A 171 MHRKHT--VQSVFLGKDNFSVTVYPN--------------------VD---YAFIASLVVILDDVNREDRA 216 (217)
T ss_dssp EEEC----------CBCSEEEEECTT--------------------SB---HHHHHHHHHHHHHHHC----
T ss_pred EEeeee--ccccccCCcEEEEEECCC--------------------CC---HHHHHHHHHHHHHhhhhccC
Confidence 999997 689999999999999752 22 49999999999999998753
|
| >1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 404 | |||
| d2q4ma1 | 189 | Hypothetical protein At5g01750 {Thale cress (Arabi | 99.66 | |
| d2q4ma1 | 189 | Hypothetical protein At5g01750 {Thale cress (Arabi | 95.97 |