Citrus Sinensis ID: 015587
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 404 | 2.2.26 [Sep-21-2011] | |||||||
| Q8I5R7 | 746 | Proline--tRNA ligase OS=P | yes | no | 1.0 | 0.541 | 0.476 | 1e-125 | |
| P28668 | 1714 | Bifunctional glutamate/pr | no | no | 0.997 | 0.235 | 0.460 | 1e-120 | |
| Q8CGC7 | 1512 | Bifunctional glutamate/pr | yes | no | 1.0 | 0.267 | 0.462 | 1e-118 | |
| P07814 | 1512 | Bifunctional glutamate/pr | yes | no | 1.0 | 0.267 | 0.443 | 1e-113 | |
| Q8SSD7 | 520 | Proline--tRNA ligase OS=E | yes | no | 0.997 | 0.775 | 0.409 | 1e-104 | |
| A0Q2I3 | 478 | Proline--tRNA ligase OS=C | yes | no | 0.967 | 0.817 | 0.377 | 9e-89 | |
| A8MLB3 | 480 | Proline--tRNA ligase OS=A | yes | no | 0.970 | 0.816 | 0.381 | 4e-88 | |
| B8I5R4 | 478 | Proline--tRNA ligase OS=C | yes | no | 0.967 | 0.817 | 0.383 | 1e-86 | |
| Q81IE9 | 476 | Proline--tRNA ligase 2 OS | yes | no | 0.967 | 0.821 | 0.373 | 8e-86 | |
| Q9L4Q8 | 481 | Proline--tRNA ligase OS=C | yes | no | 0.960 | 0.806 | 0.369 | 1e-85 |
| >sp|Q8I5R7|SYP_PLAF7 Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7) GN=proRS PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/472 (47%), Positives = 298/472 (63%), Gaps = 68/472 (14%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+IEYYDISGCYI+RP A IWE +Q FF+ EIKK+ ++N YFPLFV+ L+KEK+HIEG
Sbjct: 275 LIEYYDISGCYILRPAAYYIWECVQAFFNKEIKKLNVENSYFPLFVTKNKLEKEKNHIEG 334
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F+PEVAWVTK G+S+L IAIRPTSET+MY F KWIR +RDLPLKLNQW VVRWEF
Sbjct: 335 FSPEVAWVTKYGDSNLPEEIAIRPTSETIMYSVFPKWIRSYRDLPLKLNQWNTVVRWEFK 394
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE---- 176
PTPFIR+REFLWQEGHTA + EA V IL+LYRR YEE+LAVP+IKG KSE
Sbjct: 395 QPTPFIRTREFLWQEGHTAHKNEEEAVKLVFDILDLYRRWYEEYLAVPIIKGIKSEGEKF 454
Query: 177 -------------LENSKFVQ--------------------------------------- 184
EN + +Q
Sbjct: 455 GGANFTSTAEAFISENGRAIQAATSHYLGTNFAKMFKIEFEDENEVKQYVHQTSWGCTTR 514
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IG+M+M HGDDKGL+LPP V+ +V+++P+ YK D I C + L A I
Sbjct: 515 SIGIMIMTHGDDKGLVLPPNVSKYKVVIVPIFYKTTDENAIHSYCKDIEKILKNAQINCV 574
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
D R +YSPG+K++HWE++G+P+RIE+GPKDL N+ VRRDN K ++ + S++ +
Sbjct: 575 YDDRASYSPGYKFNHWELRGIPIRIEVGPKDLQNNSCVIVRRDNNEKCNVKKESVLLETQ 634
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCD----EEEVEKDVK 359
++L ++ ++LF+ AK++ D I V ++ E + AL ++KM+LAPWC+ EEE++K+ +
Sbjct: 635 QMLVDIHKNLFLKAKKKLDDSIVQVTSFSEVMNALNKKKMVLAPWCEDIATEEEIKKETQ 694
Query: 360 ----ARTKGEM---GAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
+T E GA K LC PL+QP +P CF SGKPAK+W +GRSY
Sbjct: 695 RLSLNQTNSETTLSGAMKPLCIPLDQPPMPPNMKCFWSGKPAKRWCLFGRSY 746
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Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro) (By similarity). Functions in trans to edit the amino acid moiety from incorrectly charged Ala-tRNA(Pro). Has no activity on correctly charged Pro-tRNA(Pro) or Ala-tRNA(Ala). Plasmodium falciparum (isolate 3D7) (taxid: 36329) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5 |
| >sp|P28668|SYEP_DROME Bifunctional glutamate/proline--tRNA ligase OS=Drosophila melanogaster GN=Aats-glupro PE=1 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/478 (46%), Positives = 295/478 (61%), Gaps = 75/478 (15%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYD+SGCYI+R W+ +IW+ ++ +FDAEI +M ++ CYFP+FVS VL+KEK HI
Sbjct: 1238 MIEYYDVSGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIAD 1297
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSG+SDL PIA+RPTSETVMYP ++KW++ +RDLP++LNQW NVVRWEF
Sbjct: 1298 FAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNNVVRWEFK 1357
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKS----- 175
PTPF+R+REFLWQEGHTAFA K EA EVL IL+LY +Y LA+PV+KG+K+
Sbjct: 1358 QPTPFLRTREFLWQEGHTAFADKEEAAKEVLDILDLYALVYTHLLAIPVVKGRKTEKEKF 1417
Query: 176 -------------------------------------------ELENSKFV--------- 183
E + K+V
Sbjct: 1418 AGGDYTTTVEAFISASGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGITT 1477
Query: 184 -QIGVMVMVHGDDKGLMLPPKVASVQVIVIP----VPYKDADTQGIFDACTATVEKLCEA 238
IGVM+MVH D++GL+LPP VA +Q IV+P V KD + + DAC A ++L
Sbjct: 1478 RTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGG 1537
Query: 239 GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298
G+R D+RDNYSPGWK++HWE+KGVPLR+E+GPKDL Q+ AVRRD KI +P +
Sbjct: 1538 GVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTVEKITIPLADV 1597
Query: 299 VERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDV 358
+++ LLE + ES+ A++ + + V W +F L Q+ ++LAP+C E E +
Sbjct: 1598 EKKIPALLETIHESMLNKAQEDMTSHTKKVTNWTDFCGFLEQKNILLAPFCGEISCEDKI 1657
Query: 359 KART----KGEMGA----AKTLCSPLEQPE-VPEGTLCF---ASGKPAKKWTYWGRSY 404
KA + + E GA AK+LC P +QP + C + KP K +T +GRSY
Sbjct: 1658 KADSARGEEAEPGAPAMGAKSLCIPFDQPAPIAASDKCINPSCTNKP-KFYTLFGRSY 1714
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Catalyzes the attachment of the cognate amino acid to the corresponding tRNA in a two-step reaction: the amino acid is first activated by ATP to form a covalent intermediate with AMP and is then transferred to the acceptor end of the cognate tRNA. Drosophila melanogaster (taxid: 7227) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q8CGC7|SYEP_MOUSE Bifunctional glutamate/proline--tRNA ligase OS=Mus musculus GN=Eprs PE=1 SV=4 | Back alignment and function description |
|---|
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/476 (46%), Positives = 294/476 (61%), Gaps = 72/476 (15%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYD+SGCYI+RPW+ SIWE+++ FFDAEIKK+ ++NCYFP+FVS L+KEK+HIE
Sbjct: 1037 MIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQAALEKEKNHIED 1096
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT+SG+++L PIAIRPTSETVMYP ++KW++ HRDLP++LNQWCNVVRWEF
Sbjct: 1097 FAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPVRLNQWCNVVRWEFK 1156
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY------------------- 161
+P PF+R+REFLWQEGH+AFAT EA DEVLQILELY R+Y
Sbjct: 1157 HPQPFLRTREFLWQEGHSAFATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKF 1216
Query: 162 ---------EEFLAVP--VIKGKKSELENSKFVQ-------------------------- 184
E F++ I+G S F +
Sbjct: 1217 AGGDYTTTIEAFISASGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLT 1276
Query: 185 ---IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDA----DTQGIFDACTATVEKLCE 237
IGVMVMVHGD+ GL+LPP+VASVQV+VIP +A D + + C +L
Sbjct: 1277 TRTIGVMVMVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLLG 1336
Query: 238 AGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGS 297
A IR D RDNYSPGWK++HWE+KGVP+R+E+GP+D+ + Q AVRRD G K+ +
Sbjct: 1337 ANIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIAEKE 1396
Query: 298 LVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVE-- 355
+++++LE++Q +LF A + + + T ++F + L K+ P+C E + E
Sbjct: 1397 AEAKLEKVLEDIQLNLFTRASEDLKTHMVVSNTLEDFQKVLDAGKVAQIPFCGEIDCEDW 1456
Query: 356 -KDVKARTKG-EMGA----AKTLCSPLEQ-PEVPEGTLCFASGKPAKKWTYWGRSY 404
K + AR + E GA AK+LC P E+ G +C PAK +T +GRSY
Sbjct: 1457 IKKMTARDQDVEPGAPSMGAKSLCIPFNPLCELQPGAMCVCGKNPAKFYTLFGRSY 1512
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Catalyzes the attachment of the cognate amino acid to the corresponding tRNA in a two-step reaction: the amino acid is first activated by ATP to form a covalent intermediate with AMP and is then transferred to the acceptor end of the cognate tRNA. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P07814|SYEP_HUMAN Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/476 (44%), Positives = 286/476 (60%), Gaps = 72/476 (15%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEY+DISGCYI+RPWA +IWE ++ FFDAEIKK+ ++NCYFP+FVS + L+KEK H+
Sbjct: 1037 MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVAD 1096
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT+SG+++L PIAIRPTSETVMYP ++KW++ HRDLP+KLNQWCNVVRWEF
Sbjct: 1097 FAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFK 1156
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILEL------------------------ 156
+P PF+R+REFLWQEGH+AFAT EA +EVLQIL+L
Sbjct: 1157 HPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKF 1216
Query: 157 ----YRRIYEEFLAVP--VIKGKKSELENSKFVQ-------------------------- 184
Y E F++ I+G S F +
Sbjct: 1217 AGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLT 1276
Query: 185 ---IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDA----DTQGIFDACTATVEKLCE 237
IGVM MVHGD+ GL+LPP+VA VQV++IP +A D + + C +L
Sbjct: 1277 TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLS 1336
Query: 238 AGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGS 297
IR +D RDNYSPGWK++HWE+KGVP+R+E+GP+D+ + Q AVRRD G K+ +
Sbjct: 1337 VNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENE 1396
Query: 298 LVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVE-- 355
+++ +LE++Q +LF A + + + T ++F + L K++ P+C E + E
Sbjct: 1397 AETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDW 1456
Query: 356 -KDVKARTKG-EMGA----AKTLCSPLEQP-EVPEGTLCFASGKPAKKWTYWGRSY 404
K AR + E GA AK+LC P + E+ G C PAK +T +GRSY
Sbjct: 1457 IKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY 1512
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Catalyzes the attachment of the cognate amino acid to the corresponding tRNA in a two-step reaction: the amino acid is first activated by ATP to form a covalent intermediate with AMP and is then transferred to the acceptor end of the cognate tRNA. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q8SSD7|SYP_ENCCU Proline--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU02_1360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 275/474 (58%), Gaps = 71/474 (14%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MI+YY I GCY+MRP +W+ + K+F +I+++ +Q CYFP+ V ++L+ EKDH+E
Sbjct: 48 MIDYYAIKGCYVMRPLGQFVWKCIHKWFTKKIEELGVQECYFPMLVPKSMLEMEKDHVEN 107
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F+PEVAW+TK G LE P+A+RPTSET++YP FSKWIR HRDLPLKLNQWC+V+RWE
Sbjct: 108 FSPEVAWITKCGNQVLEDPVAVRPTSETIIYPSFSKWIRSHRDLPLKLNQWCSVLRWELH 167
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE---- 176
PFIR +EFLWQEGHTAF T+ E+D+EVL IL+LY +IY E LAVPVIKG+KSE
Sbjct: 168 GTLPFIRGKEFLWQEGHTAFLTRKESDEEVLAILDLYSQIYSELLAVPVIKGRKSENEKF 227
Query: 177 ---------------------------------------------LENSKFV-------- 183
E+S FV
Sbjct: 228 GGADYTTSIEAFIPGSGRGVQAATSHSLGQNFSRMFDIKADTDEGSESSSFVYQNSWGIT 287
Query: 184 --QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLC----E 237
IG+ M+H D+ GL+LPP+VA QV+++P A ++ ++ A + +C
Sbjct: 288 TRSIGIAAMIHSDNLGLVLPPRVAMTQVVIVPCGITTASSKDDTESLRAYINGVCVQLKN 347
Query: 238 AGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGS 297
+G+R + D R N + G+K++HWE++GVPLR+EIG KD+A+ + VRRD AK +
Sbjct: 348 SGVRVHLDDRSNVTAGFKFNHWEIRGVPLRLEIGFKDMASSEACLVRRDTRAKKQVSVEG 407
Query: 298 LVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKD 357
+ V E ++ + + A RD+ I VK+++EF+ AL + +I+APWC E E +
Sbjct: 408 IAHTVMEEIDTMHNDMLARATSERDSRISYVKSFEEFMSALDNKNIIMAPWCGISECEIE 467
Query: 358 VKAR-TKGE------MGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
+K+R T+ + AKTLC P +G C A +T +GRSY
Sbjct: 468 IKSRSTRADPRSDVVSTGAKTLCIPYGSKPC-DGMKCINCNSQAVHYTLFGRSY 520
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Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|A0Q2I3|SYP_CLONN Proline--tRNA ligase OS=Clostridium novyi (strain NT) GN=proS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (838), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 174/461 (37%), Positives = 251/461 (54%), Gaps = 70/461 (15%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+++Y + GC I+RP+ +IWE +QK+ D + K+ +N Y P+F+ ++LQKEKDH+EG
Sbjct: 31 LVDYASVKGCMIIRPYGYAIWENIQKYLDTKFKETGHENVYMPMFIPESLLQKEKDHVEG 90
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT+ G L + +RPTSET+ +++K I+ H DLP K NQWC+VVRWE
Sbjct: 91 FAPEVAWVTQGGNDTLAERLCVRPTSETLFCDHYAKIIQSHNDLPKKYNQWCSVVRWE-K 149
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE-- 178
PF+R+ EFLWQEGHTA AT E+ E + +L +Y E LA+PVIKG+K+E E
Sbjct: 150 TTRPFLRTTEFLWQEGHTAHATAEESAKETIDMLNVYANFCENVLAIPVIKGQKTEKEKF 209
Query: 179 ---------------------------------------NSKFVQI-------------- 185
N K Q+
Sbjct: 210 AGAKATYTIESLMHDGKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGVTTRL 269
Query: 186 -GVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
G ++MVHGDD GL LPP++A +QV+++P+ +G+ D +++ + R
Sbjct: 270 IGAIIMVHGDDSGLKLPPRIAPLQVVIVPIA---QHKEGVLDKAEELRQRIAKVA-RVKV 325
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
D D PGWK++ +EMKGVP+R+E+GPKD+ N+QV VRRD KI + L ++ E
Sbjct: 326 DSSDKM-PGWKFNEYEMKGVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDELETKIPE 384
Query: 305 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQR-KMILAPWCDEEEVEKDVKARTK 363
LL+E+ S+ A+ RD KT DEF E + I A WC + E+ +K
Sbjct: 385 LLDEIHNSMLEHARTHRDEHTYTAKTLDEFKEIADTKPGFIKAMWCGDTACEEKLK---- 440
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
E+ + C P EQ E+ + +C GK AK YWG++Y
Sbjct: 441 -EVAGVSSRCMPFEQEEITDKCIC--CGKEAKHMVYWGKAY 478
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Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). Clostridium novyi (strain NT) (taxid: 386415) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|A8MLB3|SYP_ALKOO Proline--tRNA ligase OS=Alkaliphilus oremlandii (strain OhILAs) GN=proS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 176/461 (38%), Positives = 249/461 (54%), Gaps = 69/461 (14%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+++Y + G +++P+ +IWE +Q + D K+ +NCYFPL + ++L+KE +H+EG
Sbjct: 32 LVDYSPVKGFMVIKPYGYAIWENIQNYMDKRFKETGHKNCYFPLLIPESLLKKEAEHVEG 91
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT G +L + +RPTSET++ +SKW+ +RDLP NQWC+VVRWE S
Sbjct: 92 FAPEVAWVTHGGNEELAERLCVRPTSETIICEMYSKWLTSYRDLPFLYNQWCSVVRWEKS 151
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE---- 176
PF+R+ EFLWQEGHT T EA E LQ+L +YR E LA+PV+ G+KSE
Sbjct: 152 T-RPFLRTSEFLWQEGHTLHETYEEAQAETLQMLNIYRETAENLLAMPVVIGQKSEKEKF 210
Query: 177 ------------LENSKFVQIGV------------------------------------- 187
+ + K +Q G
Sbjct: 211 AGAYATYTMEALMHDGKALQAGTSHNLGQHFTTAFDITYSDRNGELKHPYHTSWGVSTRL 270
Query: 188 ---MVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
++MVHGD++GL+LPP +A QV+++PV + +G+ D ++L + R
Sbjct: 271 IGGIIMVHGDNRGLVLPPGIAPTQVVIVPVA---SHKEGVLDKANELRDRLKDK-FRVEL 326
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
D RDNYSPGWK++ WEMKGVP+RIEIGP+D+ N+Q RRD K + L E V++
Sbjct: 327 DDRDNYSPGWKFNEWEMKGVPIRIEIGPRDIENNQAMLFRRDELEKDAVSLDDLEEAVEK 386
Query: 305 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQR-KMILAPWCDEEEVEKDVKARTK 363
LLE++ +L AK RD IVKT+DE E + + + A WC E E+ VKA T
Sbjct: 387 LLEDINNNLLYKAKMMRDEKTYIVKTFDEMKEVMEIKPGFVKAMWCGERACEEHVKAET- 445
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
C P EQ + G C GK AK Y ++Y
Sbjct: 446 ----GVTIRCIPFEQENL--GHTCAFCGKEAKHMVYLAKAY 480
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Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). Alkaliphilus oremlandii (strain OhILAs) (taxid: 350688) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|B8I5R4|SYP_CLOCE Proline--tRNA ligase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=proS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/461 (38%), Positives = 250/461 (54%), Gaps = 70/461 (15%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+++Y + GC +++P+ +IWE +QK D K+ +N Y P+F+ ++L KEK+H+EG
Sbjct: 31 LVDYSSVRGCMVIKPYGYAIWENIQKSLDTRFKETGHENVYMPMFIPESLLLKEKEHVEG 90
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT G+ L + +RPTSET+ ++S I+ +RDLP NQWC+VVRWE
Sbjct: 91 FAPEVAWVTHGGDEKLTERLCVRPTSETLFCEHYSNSIQSYRDLPKLYNQWCSVVRWE-K 149
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE---- 176
PF+R+ EFLWQEGHTA AT EA +E +++L +Y + E LA+PVIKG+K+E
Sbjct: 150 TTRPFLRTLEFLWQEGHTAHATAEEAQEETIRMLNVYADVLENVLAIPVIKGRKTEKEKF 209
Query: 177 ------------LENSKFVQIGV------------------------------------- 187
+ + K +Q G
Sbjct: 210 AGAHATYTVESLMHDGKALQSGTSHNFGDGFAKAFDIQYTDKNNQLQYVHQTSWGVTTRL 269
Query: 188 ---MVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
++MVHGDD GL+LPP +A Q+++IPV +G+ + +KL A R
Sbjct: 270 IGAIIMVHGDDSGLVLPPAIAPTQLVIIPV---SQHKEGVLEKANELKQKL-SAKFRVKM 325
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
D D PGWK+S +EMKGVPLRIEIGPKD+ +Q VRRDN KI + +L E V
Sbjct: 326 DDSDKM-PGWKFSEYEMKGVPLRIEIGPKDIEKNQAVLVRRDNREKIFVSLDNLEETVVN 384
Query: 305 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQR-KMILAPWCDEEEVEKDVKARTK 363
L +VQ+SL A++ RD I T +EF + + + WC E E E VK +T
Sbjct: 385 TLADVQKSLLEKARELRDKKTYIAATLEEFDQIINSTPGFVKGMWCGERECEDLVKEKT- 443
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
A C PLEQ ++ + +C GKPAK YWG++Y
Sbjct: 444 ----GATARCMPLEQEQLSDKCMC--CGKPAKSMVYWGKAY 478
|
Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) (taxid: 394503) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q81IE9|SYP2_BACCR Proline--tRNA ligase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=proS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (813), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 172/461 (37%), Positives = 251/461 (54%), Gaps = 70/461 (15%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+++Y + GC I+RP+ ++WE MQK D ++K+ +N Y P+F+ ++LQKEKDH+EG
Sbjct: 29 LVDYSSVKGCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEG 88
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT G+ L + +RPTSET+ +FSK ++ + DLP NQWC+VVRWE
Sbjct: 89 FAPEVAWVTHGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWE-K 147
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE---- 176
PF+R+ EFLWQEGHT T E+ E L IL LY E++LA+PVIKG+K+E
Sbjct: 148 TTRPFLRTTEFLWQEGHTIHETAEESQAETLNILNLYASFCEDYLAIPVIKGQKTEKEKF 207
Query: 177 ------------LENSKFVQIGV------------------------------------- 187
+ + K +Q G
Sbjct: 208 AGAKATYTIESLMHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGVSTRM 267
Query: 188 ---MVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
++MVH D+ GL+LPPKVA VQV+++P+ A ++K+ I A+
Sbjct: 268 IGGLIMVHSDNNGLVLPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKVARVKIDAS- 326
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
N +PGWK++ +EMKG+P+R+E+GPKD+ +QV VRRD K +P L ER+
Sbjct: 327 ----NKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPA 382
Query: 305 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKARTK 363
LLEE+ +LF AK RD + ++E + +++ I A WC E E+ +K
Sbjct: 383 LLEEIHIALFNKAKAFRDENTYVATNFEEMKKIADEKQGFIKAMWCGELACEEKLKE--- 439
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
E G + + C P EQ + E +C GK AK+ YWG++Y
Sbjct: 440 -EFGVS-SRCMPFEQEHLAEECIC--CGKEAKQMVYWGKAY 476
|
Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q9L4Q8|SYP_CLOSD Proline--tRNA ligase OS=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) GN=proS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/466 (36%), Positives = 247/466 (53%), Gaps = 78/466 (16%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+++Y + G +++P+ +IWE +Q F D K+ QNCYFPL + ++L KEK+H+EG
Sbjct: 32 LVDYSPVKGFMVIKPYGYAIWENIQAFLDRRFKETGHQNCYFPLLIPESLLNKEKEHVEG 91
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT G L + +RPTSET++ +SKW+ +R+LP NQWC+VVRWE S
Sbjct: 92 FAPEVAWVTHGGSEKLAERLCVRPTSETIICSMYSKWLTSYRELPYLYNQWCSVVRWEKS 151
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE---- 176
PF+R+ EFLWQEGHT T EA E LQ+L +Y+ + E+ LA+PV+ G+KS+
Sbjct: 152 T-RPFLRTSEFLWQEGHTLHETAEEAQAETLQMLAIYKEMAEDLLAIPVVDGRKSDRERF 210
Query: 177 ------------LENSKFVQIGV------------------------------------- 187
+ + K +Q G
Sbjct: 211 AGAAATYTIEALMHDGKALQSGTSHNLAQHFTKAFDITFQGRTGELEYPHHTSWGASTRL 270
Query: 188 ---MVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
++MVHGD++GL+LPP+VA QV++IP+ + +G+ D ++L GIR
Sbjct: 271 IGGIIMVHGDNRGLVLPPRVAPTQVVIIPIA---QNKEGVLDKAYEIKKELEAKGIRVTL 327
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
D NYSPGWK++ +EMKGVPLR+EIGP+D+ N+ RRD +K ++ + VK
Sbjct: 328 DDDTNYSPGWKFNQYEMKGVPLRLEIGPRDIENNVAMIARRDTLSKDSYSLDNIGDTVKN 387
Query: 305 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAP------WCDEEEVEKDV 358
LL+ V + A+ RD+ K ++EF +RKMI P WC EEE E +
Sbjct: 388 LLDTVHTDMLERARAHRDSKTFTFKDYEEF-----KRKMIETPGFAKGMWCGEEECEAKI 442
Query: 359 KARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
K T C P Q + G C GKPAK Y ++Y
Sbjct: 443 KEDT-----GVTIRCIPFVQENL--GETCQFCGKPAKHMVYLAKAY 481
|
Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). Can inadvertently accommodate and process cysteine. Misacylated Cys-tRNA(Pro) is not edited by ProRS; this function may be provided by proX. Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) (taxid: 499177) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 404 | ||||||
| 224064768 | 498 | predicted protein [Populus trichocarpa] | 1.0 | 0.811 | 0.739 | 0.0 | |
| 449468780 | 511 | PREDICTED: bifunctional glutamate/prolin | 1.0 | 0.790 | 0.739 | 0.0 | |
| 118486938 | 498 | unknown [Populus trichocarpa] | 1.0 | 0.811 | 0.728 | 0.0 | |
| 15228692 | 530 | prolyl-tRNA synthetase [Arabidopsis thal | 1.0 | 0.762 | 0.724 | 0.0 | |
| 297817558 | 522 | predicted protein [Arabidopsis lyrata su | 1.0 | 0.773 | 0.722 | 0.0 | |
| 356572846 | 515 | PREDICTED: bifunctional aminoacyl-tRNA s | 1.0 | 0.784 | 0.735 | 0.0 | |
| 356505683 | 515 | PREDICTED: bifunctional aminoacyl-tRNA s | 1.0 | 0.784 | 0.731 | 0.0 | |
| 357511557 | 529 | Bifunctional aminoacyl-tRNA synthetase [ | 1.0 | 0.763 | 0.731 | 0.0 | |
| 224130834 | 508 | predicted protein [Populus trichocarpa] | 1.0 | 0.795 | 0.711 | 0.0 | |
| 388491056 | 529 | unknown [Medicago truncatula] | 1.0 | 0.763 | 0.728 | 0.0 |
| >gi|224064768|ref|XP_002301553.1| predicted protein [Populus trichocarpa] gi|222843279|gb|EEE80826.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/461 (73%), Positives = 377/461 (81%), Gaps = 57/461 (12%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPW++SIWETMQ FFD EIKKMKI+NCYFPLFVS +VLQKEKDHIEG
Sbjct: 38 MIEYYDISGCYILRPWSMSIWETMQAFFDVEIKKMKIKNCYFPLFVSSSVLQKEKDHIEG 97
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTK+G+SDLEVP+AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 98 FAPEVAWVTKAGKSDLEVPVAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 157
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
NPTPFIRSREFLWQEGHTAFA+K EAD+EVLQILELYRRIYEEFLA+PV
Sbjct: 158 NPTPFIRSREFLWQEGHTAFASKQEADEEVLQILELYRRIYEEFLAIPVIKGKKSEMEKF 217
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
I+G S F +
Sbjct: 218 AGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMAWQNSWAYSTR 277
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVMVMVHGDDKGL+LPPKVASVQVIV+PVPYKDADTQGIFDAC ATV+ LCEAGIRA
Sbjct: 278 TIGVMVMVHGDDKGLVLPPKVASVQVIVVPVPYKDADTQGIFDACAATVDTLCEAGIRAE 337
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
+DFR+NYSPGWKYSHWEMKGVPLRIEIGPKDLAN+QVRAVRRDN AK+D+ R SL+E+VK
Sbjct: 338 ADFRENYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNAAKVDISRDSLMEKVK 397
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 363
++L+++Q+ LF AAKQ+RDACIQ+VKTW EF EAL QRKMILAPWCDEEEVE+DVK RT+
Sbjct: 398 DMLDDIQQRLFDAAKQKRDACIQVVKTWGEFKEALSQRKMILAPWCDEEEVERDVKERTR 457
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
GEMGAAK+LCSP +QPE+PEGT CFASGKPAKKWTYWGRSY
Sbjct: 458 GEMGAAKSLCSPFDQPELPEGTACFASGKPAKKWTYWGRSY 498
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468780|ref|XP_004152099.1| PREDICTED: bifunctional glutamate/proline--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/461 (73%), Positives = 371/461 (80%), Gaps = 57/461 (12%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPWAISIWETMQ FFDAEIK+MKI+NCYFPLFVSP VLQ+EKDHIEG
Sbjct: 51 MIEYYDISGCYILRPWAISIWETMQVFFDAEIKQMKIKNCYFPLFVSPGVLQREKDHIEG 110
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPY+SKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 111 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS 170
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
+PTPFIRSREFLWQEGHTAFATK EAD EVL+ILELYRRIYEE+LA+PV
Sbjct: 171 HPTPFIRSREFLWQEGHTAFATKDEADTEVLEILELYRRIYEEYLAIPVIKGKKSEMEKF 230
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
I+G S F +
Sbjct: 231 AGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKLFEINFENEKGEKAMVWQNSWAYSTR 290
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVMVMVHGDDKGL+LPPKVASVQVI++PVPYKDADTQGIFDAC+AT++ L AGIRA
Sbjct: 291 TIGVMVMVHGDDKGLVLPPKVASVQVIIVPVPYKDADTQGIFDACSATLDTLTAAGIRAE 350
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
D RDNYSPGWKYSHWEMKGVPLRIEIGPKDLAN+QVRAVRRDN K D+PR SLVE+VK
Sbjct: 351 VDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNSGKKDIPRDSLVEQVK 410
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 363
ELLE +Q+SLF AAK +RD CIQ++ TW+EF EALGQ+KMILAPWCDEEEVEKDVK RTK
Sbjct: 411 ELLESIQQSLFDAAKVKRDTCIQVINTWEEFTEALGQKKMILAPWCDEEEVEKDVKTRTK 470
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
GEMGAAKTLCSP +QP +PEGT CFASGKPAKKW+YWGRSY
Sbjct: 471 GEMGAAKTLCSPFDQPALPEGTKCFASGKPAKKWSYWGRSY 511
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118486938|gb|ABK95302.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/461 (72%), Positives = 376/461 (81%), Gaps = 57/461 (12%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPWA+SIWE MQ FFDAEIKKMKI+NCYFPLFVS +VL+KEKDHIEG
Sbjct: 38 MIEYYDISGCYILRPWAMSIWEIMQVFFDAEIKKMKIKNCYFPLFVSSSVLEKEKDHIEG 97
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSG+SDLE+PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 98 FAPEVAWVTKSGKSDLEIPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 157
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
NPTPFIRSREFLWQEGHTAFATK EAD+EVLQILELYRRIYEEFLA+P+
Sbjct: 158 NPTPFIRSREFLWQEGHTAFATKQEADEEVLQILELYRRIYEEFLAIPIIKGKKSEMEKF 217
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
I+G S F +
Sbjct: 218 AGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMAWQNSWAYSTR 277
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVMVMVHGDDKGL+LPPKV+SVQVIV+PVP+KDA+TQGIFDAC ATV+ LCEAGIRA
Sbjct: 278 TIGVMVMVHGDDKGLVLPPKVSSVQVIVVPVPFKDANTQGIFDACAATVDTLCEAGIRAE 337
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
+D+R+NYSPGWKYSHWEMKGVPLRIEIGPKDLAN+QVRAVRRDN AK+D+ +L E+VK
Sbjct: 338 ADYRENYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNAAKVDISCDNLAEKVK 397
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 363
++L+++Q+S+F AAKQ+RDACIQ+ KTWDEF EAL QRKMILAPWCDEEEVEKDVK RT+
Sbjct: 398 DMLDDIQKSMFDAAKQKRDACIQVAKTWDEFKEALSQRKMILAPWCDEEEVEKDVKDRTR 457
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
GEMGAAK+LCSP +QPE+PEG+ CFASGKPAKKWTYWGRSY
Sbjct: 458 GEMGAAKSLCSPFDQPELPEGSTCFASGKPAKKWTYWGRSY 498
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228692|ref|NP_191771.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|30695549|ref|NP_850736.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|6899922|emb|CAB71872.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gi|16648885|gb|AAL24294.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gi|22136084|gb|AAM91120.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gi|332646791|gb|AEE80312.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|332646792|gb|AEE80313.1| prolyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/461 (72%), Positives = 373/461 (80%), Gaps = 57/461 (12%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPW+++IWE MQ FFDAEIKKMK++NCYFPLFVSP VL+KEKDHIEG
Sbjct: 70 MIEYYDISGCYILRPWSMAIWEIMQIFFDAEIKKMKVKNCYFPLFVSPGVLEKEKDHIEG 129
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSG+SDLEVPIAIRPTSETVMYPY+SKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 130 FAPEVAWVTKSGKSDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS 189
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
NPTPFIRSREFLWQEGHTAFATK+EAD+EVLQILELYRRIYEE+LAVPV
Sbjct: 190 NPTPFIRSREFLWQEGHTAFATKAEADEEVLQILELYRRIYEEYLAVPVVKGMKSENEKF 249
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
++G S F +
Sbjct: 250 AGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFAKMFEINFENEKAETEMVWQNSWAYSTR 309
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVM+M HGDDKGL+LPPKVASVQV+VIPVPYKDA+TQGI+DACTAT LCEAGIRA
Sbjct: 310 TIGVMIMTHGDDKGLVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIRAE 369
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
D RDNYSPGWKYS WEMKGVPLRIEIGP+DL NDQVR VRRDNG K D+PRGSLVE VK
Sbjct: 370 EDLRDNYSPGWKYSDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDIPRGSLVEHVK 429
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 363
ELLE++Q++++ AKQ+R+AC+Q VKTWDEF++AL ++K+ILAPWCDEEEVE+DVKARTK
Sbjct: 430 ELLEKIQQNMYEVAKQKREACVQEVKTWDEFIKALNEKKLILAPWCDEEEVERDVKARTK 489
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
GE GAAKTLCSP +QPE+PEGTLCFASGKPAKKWTYWGRSY
Sbjct: 490 GETGAAKTLCSPFDQPELPEGTLCFASGKPAKKWTYWGRSY 530
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817558|ref|XP_002876662.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322500|gb|EFH52921.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/461 (72%), Positives = 373/461 (80%), Gaps = 57/461 (12%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPW+++IWE MQ FFDAEIKKMK++NCYFPLFVSP VL+KEKDHIEG
Sbjct: 62 MIEYYDISGCYILRPWSMAIWEIMQIFFDAEIKKMKVKNCYFPLFVSPAVLEKEKDHIEG 121
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSG+SDLE+PIAIRPTSETVMYPY+SKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 122 FAPEVAWVTKSGKSDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS 181
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
NPTPFIRSREFLWQEGHTAFATK+EAD+EVLQILELYRRIYEE+LAVPV
Sbjct: 182 NPTPFIRSREFLWQEGHTAFATKAEADEEVLQILELYRRIYEEYLAVPVVKGMKSENEKF 241
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
++G S F +
Sbjct: 242 AGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFAKMFEINYENEKAETAMVWQNSWAYSTR 301
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVM+M HGDDKGL+LPPKVASVQV+VIPVPYKDA+TQGI+DACTAT LCEAGIRA
Sbjct: 302 TIGVMIMTHGDDKGLVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIRAE 361
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
D RDNYSPGWKYS WEMKGVPLRIEIGP+DL NDQVR VRRDNG K D+PRGSLVE VK
Sbjct: 362 EDLRDNYSPGWKYSDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDIPRGSLVENVK 421
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 363
ELLE++Q++++ AKQ+R+AC+Q VKTWDEF++AL ++K+ILAPWCDEEEVE+DVKARTK
Sbjct: 422 ELLEKIQQNMYEVAKQKREACVQEVKTWDEFIKALNEKKLILAPWCDEEEVERDVKARTK 481
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
GE GAAKTLCSP +QPE+PEGTLCFASGKPAKKWTYWGRSY
Sbjct: 482 GETGAAKTLCSPFDQPELPEGTLCFASGKPAKKWTYWGRSY 522
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572846|ref|XP_003554576.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/461 (73%), Positives = 368/461 (79%), Gaps = 57/461 (12%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPW+++IWE MQ+FFD EIKKMKI+NCYFPLFVSP VLQKEKDH+EG
Sbjct: 55 MIEYYDISGCYILRPWSMAIWEIMQEFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEG 114
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSGES+LE+PIAIRPTSETVMYPY+SKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 115 FAPEVAWVTKSGESELEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS 174
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
NPTPFIRSREFLWQEGHTAFATK EAD EVL+ILELYRRIYEE+LAVPV
Sbjct: 175 NPTPFIRSREFLWQEGHTAFATKDEADAEVLEILELYRRIYEEYLAVPVIKGKKSELEKF 234
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
I+G S F +
Sbjct: 235 AGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTR 294
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVMVMVHGDDKGL+LPPKVASVQVIVIPVPYKDADTQGIFDAC+ATV L EAGIRA
Sbjct: 295 TIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACSATVNTLNEAGIRAE 354
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
SD RDNYSPGWKYS+WEMKGVPLRIEIGPKDLAN QVRAVRRDNGAKID+ LV +K
Sbjct: 355 SDSRDNYSPGWKYSNWEMKGVPLRIEIGPKDLANKQVRAVRRDNGAKIDIASADLVVEIK 414
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 363
+LL+ +Q++LF AKQ+RD CIQI+ TWDEFV+AL QRKMILAPWCDEEEVE DVKARTK
Sbjct: 415 KLLDTIQQNLFDVAKQKRDECIQIIHTWDEFVQALNQRKMILAPWCDEEEVEADVKARTK 474
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
GEMGAAKTLCSP +QPE+PEGT CFASGKPA KWTYWGRSY
Sbjct: 475 GEMGAAKTLCSPFDQPELPEGTKCFASGKPATKWTYWGRSY 515
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505683|ref|XP_003521619.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/461 (73%), Positives = 367/461 (79%), Gaps = 57/461 (12%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPW+++IWE MQ+FFD EIKKMKI+NCYFPLFVSP VLQKEKDH+EG
Sbjct: 55 MIEYYDISGCYILRPWSMAIWEIMQEFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEG 114
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSGES+LE+PIAIRPTSETVMYPY+SKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 115 FAPEVAWVTKSGESELEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS 174
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
NPTPFIRSREFLWQEGHTAFA+K EAD EVL+ILELYRRIYEE+LAVPV
Sbjct: 175 NPTPFIRSREFLWQEGHTAFASKEEADAEVLEILELYRRIYEEYLAVPVIKGKKSELEKF 234
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
I+G S F +
Sbjct: 235 AGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGERAMVWQNSWAYSTR 294
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVMVMVHGDDKGL+LPPKVASVQVIVIPVPYKDADTQGIFDAC+ATV L EAGIRA
Sbjct: 295 TIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACSATVNTLNEAGIRAE 354
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
SD RDNYSPGWKYS+WEMKGVPLRIEIGPKDLAN QVRAVRRDNGAKID+ LV +K
Sbjct: 355 SDSRDNYSPGWKYSNWEMKGVPLRIEIGPKDLANKQVRAVRRDNGAKIDIASADLVVEIK 414
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 363
+LL+ +Q++LF AKQ+RD CIQI+ TWDEFV+AL QRKMI APWCDEEEVE DVKARTK
Sbjct: 415 KLLDTIQQNLFDVAKQKRDECIQIIHTWDEFVQALNQRKMIFAPWCDEEEVEADVKARTK 474
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
GEMGAAKTLCSP +QPE+PEGT CFASGKPA KWTYWGRSY
Sbjct: 475 GEMGAAKTLCSPFDQPELPEGTKCFASGKPATKWTYWGRSY 515
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511557|ref|XP_003626067.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] gi|355501082|gb|AES82285.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/461 (73%), Positives = 367/461 (79%), Gaps = 57/461 (12%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPW+++IWE MQ FFD EIKKMKI+NCYFPLFVS TVL+KEKDHIEG
Sbjct: 69 MIEYYDISGCYILRPWSMAIWEIMQAFFDPEIKKMKIKNCYFPLFVSNTVLEKEKDHIEG 128
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSGESDLE+PIAIRPTSETVMYPY+SKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 129 FAPEVAWVTKSGESDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS 188
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
NPTPFIRSREFLWQEGHTAFATK EAD EVL+ILELYRRIYEE+LAVPV
Sbjct: 189 NPTPFIRSREFLWQEGHTAFATKEEADTEVLEILELYRRIYEEYLAVPVVKGKKSELEKF 248
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
I+G S F +
Sbjct: 249 AGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINYENEKGEKAMVWQNSWAYSTR 308
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVMVMVHGDDKGL+LPPKVASVQVIVIPVPYKDADTQGIFDACTATV L EAGIRA
Sbjct: 309 TIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACTATVNMLLEAGIRAE 368
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
SD RDNYSPGWKYS WEMKGVPLRIEIGPKDLAN QVRAVRRD+GAKID+ LV +K
Sbjct: 369 SDARDNYSPGWKYSQWEMKGVPLRIEIGPKDLANKQVRAVRRDSGAKIDIGNDDLVVEIK 428
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 363
+LL+ +Q++LF AK +RDACIQI+ TWDEFV AL ++KMILAPWCDEEEVEKDVKARTK
Sbjct: 429 KLLDNIQQNLFDVAKHKRDACIQIIHTWDEFVAALNEKKMILAPWCDEEEVEKDVKARTK 488
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
GE GAAKTLCSP +QPE+PEGT+CFASGKPAKKW+YWG+SY
Sbjct: 489 GETGAAKTLCSPFDQPELPEGTVCFASGKPAKKWSYWGKSY 529
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130834|ref|XP_002320936.1| predicted protein [Populus trichocarpa] gi|222861709|gb|EEE99251.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/472 (71%), Positives = 375/472 (79%), Gaps = 68/472 (14%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPWA+SIWE MQ FFDAEIKKMKI+NCYFPLFVS +VL+KEKDHIEG
Sbjct: 37 MIEYYDISGCYILRPWAMSIWEIMQVFFDAEIKKMKIKNCYFPLFVSSSVLEKEKDHIEG 96
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSG+SDLE+PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 97 FAPEVAWVTKSGKSDLEIPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 156
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
NPTPFIR REFLWQEGHTAFATK EAD+EVLQILELYRRIYEEFLA+P+
Sbjct: 157 NPTPFIRYREFLWQEGHTAFATKQEADEEVLQILELYRRIYEEFLAIPIIKGKKSEMEKF 216
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
I+G S F +
Sbjct: 217 AGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMAWQNSWAYSTR 276
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVMVMVHGDDKGL+LPPKV+SVQVIV+PVP+KDA+TQGIFDAC ATV+ LCEAGIRA
Sbjct: 277 TIGVMVMVHGDDKGLVLPPKVSSVQVIVVPVPFKDANTQGIFDACAATVDTLCEAGIRAE 336
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQ---------VRAVRRDNGAKIDLP 294
+D+R+NYSPGWKYSHWEMKGVPLRIEIGPKDLAN+Q VRAVRRDN AK+D+
Sbjct: 337 ADYRENYSPGWKYSHWEMKGVPLRIEIGPKDLANNQASIPSLHFTVRAVRRDNAAKVDIS 396
Query: 295 RGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEV 354
+L E+VK++L+++Q+S+F AAKQ+RDACIQ+ KTWDEF EAL QRKMILAPWCDEEEV
Sbjct: 397 CDNLAEKVKDMLDDIQKSMFDAAKQKRDACIQVAKTWDEFKEALSQRKMILAPWCDEEEV 456
Query: 355 EKDVKARTKGEMGAAKTLCSPLEQPEVPEGT--LCFASGKPAKKWTYWGRSY 404
EKDVK RT+GEMGAAK+LCSP +QPE+PEGT CFASGKPAKKWTYWGRSY
Sbjct: 457 EKDVKDRTRGEMGAAKSLCSPFDQPELPEGTSSTCFASGKPAKKWTYWGRSY 508
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388491056|gb|AFK33594.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/461 (72%), Positives = 366/461 (79%), Gaps = 57/461 (12%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYDISGCYI+RPW+++IW MQ FFD EIKKMKI+NCYFPLFVS TVL+KEKDHIEG
Sbjct: 69 MIEYYDISGCYILRPWSMAIWGIMQAFFDPEIKKMKIKNCYFPLFVSNTVLEKEKDHIEG 128
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSGESDLE+PIAIRPTSETVMYPY+SKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 129 FAPEVAWVTKSGESDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS 188
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV----------- 169
NPTPFIRSREFLWQEGHTAFATK EAD EVL+ILELYRRIYEE+LAVPV
Sbjct: 189 NPTPFIRSREFLWQEGHTAFATKEEADTEVLEILELYRRIYEEYLAVPVVKGKKSELEKF 248
Query: 170 -------------------IKGKKSELENSKFVQ-------------------------- 184
I+G S F +
Sbjct: 249 AGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINYENEKGEKAMVWQNSWAYSTR 308
Query: 185 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IGVMVMVHGDDKGL+LPPKVASVQVIVIPVPYKDADTQGIFDACTATV L EAGIRA
Sbjct: 309 TIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACTATVNMLLEAGIRAE 368
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
SD RDNYSPGWKYS WEMKGVPLRIEIGPKDLAN QVRAVRRD+GAKID+ LV +K
Sbjct: 369 SDARDNYSPGWKYSQWEMKGVPLRIEIGPKDLANKQVRAVRRDSGAKIDIGNDDLVVEIK 428
Query: 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 363
+LL+ +Q++LF AK +RDACIQI+ TWDEFV AL ++KMILAPWCDEEEVEKDVKARTK
Sbjct: 429 KLLDNIQQNLFDVAKHKRDACIQIIHTWDEFVAALNEKKMILAPWCDEEEVEKDVKARTK 488
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
GE GAAKTLCSP +QPE+PEGT+CFASGKPAKKW+YWG+SY
Sbjct: 489 GETGAAKTLCSPFDQPELPEGTVCFASGKPAKKWSYWGKSY 529
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 404 | ||||||
| TAIR|locus:2098053 | 530 | AT3G62120 [Arabidopsis thalian | 0.544 | 0.415 | 0.759 | 4.1e-186 | |
| DICTYBASE|DDB_G0284197 | 548 | proS "prolyl-tRNA synthetase" | 0.440 | 0.324 | 0.752 | 9.3e-127 | |
| WB|WBGene00004189 | 581 | pars-1 [Caenorhabditis elegans | 0.440 | 0.306 | 0.651 | 2.3e-116 | |
| GENEDB_PFALCIPARUM|PFL0670c | 746 | PFL0670c "Bi-functional aminoa | 0.440 | 0.238 | 0.691 | 3.7e-116 | |
| UNIPROTKB|Q8I5R7 | 746 | proRS "Proline--tRNA ligase" [ | 0.440 | 0.238 | 0.691 | 3.7e-116 | |
| MGI|MGI:97838 | 1512 | Eprs "glutamyl-prolyl-tRNA syn | 0.440 | 0.117 | 0.713 | 3.8e-114 | |
| UNIPROTKB|G3X6L9 | 1511 | EPRS "Uncharacterized protein" | 0.440 | 0.117 | 0.713 | 6.5e-114 | |
| RGD|1310952 | 1486 | Eprs "glutamyl-prolyl-tRNA syn | 0.440 | 0.119 | 0.707 | 2e-113 | |
| UNIPROTKB|F1LMJ9 | 1512 | Eprs "Protein Eprs" [Rattus no | 0.440 | 0.117 | 0.707 | 2.2e-113 | |
| ZFIN|ZDB-GENE-030131-638 | 1683 | eprs "glutamyl-prolyl-tRNA syn | 0.440 | 0.105 | 0.691 | 3.9e-113 |
| TAIR|locus:2098053 AT3G62120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 934 (333.8 bits), Expect = 4.1e-186, Sum P(2) = 4.1e-186
Identities = 167/220 (75%), Positives = 188/220 (85%)
Query: 185 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
IGVM+M HGDDKGL+LPPKVASVQV+VIPVPYKDA+TQGI+DACTAT LCEAGIRA
Sbjct: 311 IGVMIMTHGDDKGLVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIRAEE 370
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSXXXXXXX 304
D RDNYSPGWKYS WEMKGVPLRIEIGP+DL NDQVR VRRDNG K D+PRGS
Sbjct: 371 DLRDNYSPGWKYSDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDIPRGSLVEHVKE 430
Query: 305 XXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKG 364
+++ AKQ+R+AC+Q VKTWDEF++AL ++K+ILAPWCDEEEVE+DVKARTKG
Sbjct: 431 LLEKIQQNMYEVAKQKREACVQEVKTWDEFIKALNEKKLILAPWCDEEEVERDVKARTKG 490
Query: 365 EMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
E GAAKTLCSP +QPE+PEGTLCFASGKPAKKWTYWGRSY
Sbjct: 491 ETGAAKTLCSPFDQPELPEGTLCFASGKPAKKWTYWGRSY 530
|
|
| DICTYBASE|DDB_G0284197 proS "prolyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 9.3e-127, Sum P(3) = 9.3e-127
Identities = 134/178 (75%), Positives = 149/178 (83%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MI+YYDISGCYI+RPWA SIWE +Q FFDAEIKK+ +QN YFPL VS L EKDHIEG
Sbjct: 69 MIDYYDISGCYILRPWAYSIWEQIQAFFDAEIKKLDVQNAYFPLLVSEKALTTEKDHIEG 128
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVTKSG+S L P+AIRPTSET+MYP ++ WIR HRDLPLKLNQW NVVRWEF
Sbjct: 129 FAPEVAWVTKSGDSQLADPVAIRPTSETIMYPAYANWIRSHRDLPLKLNQWVNVVRWEFK 188
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
P PF+RSREFLWQEGHTAFA K EAD+EV IL+LYRR+YEE L VPV+KG KSE E
Sbjct: 189 RPVPFLRSREFLWQEGHTAFANKEEADEEVFTILDLYRRVYEELLCVPVVKGVKSEKE 246
|
|
| WB|WBGene00004189 pars-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 2.3e-116, Sum P(2) = 2.3e-116
Identities = 116/178 (65%), Positives = 153/178 (85%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYD+SGCY++RPW+ ++WE++Q++FD+ IKK+ ++NCYFP+FVS L++EK HI
Sbjct: 112 MIEYYDVSGCYVLRPWSFAVWESIQEWFDSGIKKLGVKNCYFPMFVSNAALEREKTHIAD 171
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT++G S++ PIAIRPTSETVMYP + KW++ HRDLP+KLNQWCNVVRWEF
Sbjct: 172 FAPEVAWVTRAGNSEMAEPIAIRPTSETVMYPSYKKWVQSHRDLPIKLNQWCNVVRWEFK 231
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
+PTPF+R+REFLWQEGHTAFA ++A+ EV QIL+LY +Y + LA+PV+KG+KSE E
Sbjct: 232 HPTPFLRTREFLWQEGHTAFANPADAEKEVFQILDLYAGVYTDLLAIPVVKGRKSEKE 289
|
|
| GENEDB_PFALCIPARUM|PFL0670c PFL0670c "Bi-functional aminoacyl-tRNA synthetase, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
Identities = 123/178 (69%), Positives = 143/178 (80%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+IEYYDISGCYI+RP A IWE +Q FF+ EIKK+ ++N YFPLFV+ L+KEK+HIEG
Sbjct: 275 LIEYYDISGCYILRPAAYYIWECVQAFFNKEIKKLNVENSYFPLFVTKNKLEKEKNHIEG 334
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F+PEVAWVTK G+S+L IAIRPTSET+MY F KWIR +RDLPLKLNQW VVRWEF
Sbjct: 335 FSPEVAWVTKYGDSNLPEEIAIRPTSETIMYSVFPKWIRSYRDLPLKLNQWNTVVRWEFK 394
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
PTPFIR+REFLWQEGHTA + EA V IL+LYRR YEE+LAVP+IKG KSE E
Sbjct: 395 QPTPFIRTREFLWQEGHTAHKNEEEAVKLVFDILDLYRRWYEEYLAVPIIKGIKSEGE 452
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| UNIPROTKB|Q8I5R7 proRS "Proline--tRNA ligase" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
Identities = 123/178 (69%), Positives = 143/178 (80%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+IEYYDISGCYI+RP A IWE +Q FF+ EIKK+ ++N YFPLFV+ L+KEK+HIEG
Sbjct: 275 LIEYYDISGCYILRPAAYYIWECVQAFFNKEIKKLNVENSYFPLFVTKNKLEKEKNHIEG 334
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F+PEVAWVTK G+S+L IAIRPTSET+MY F KWIR +RDLPLKLNQW VVRWEF
Sbjct: 335 FSPEVAWVTKYGDSNLPEEIAIRPTSETIMYSVFPKWIRSYRDLPLKLNQWNTVVRWEFK 394
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
PTPFIR+REFLWQEGHTA + EA V IL+LYRR YEE+LAVP+IKG KSE E
Sbjct: 395 QPTPFIRTREFLWQEGHTAHKNEEEAVKLVFDILDLYRRWYEEYLAVPIIKGIKSEGE 452
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| MGI|MGI:97838 Eprs "glutamyl-prolyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 127/178 (71%), Positives = 159/178 (89%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYD+SGCYI+RPW+ SIWE+++ FFDAEIKK+ ++NCYFP+FVS L+KEK+HIE
Sbjct: 1037 MIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQAALEKEKNHIED 1096
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT+SG+++L PIAIRPTSETVMYP ++KW++ HRDLP++LNQWCNVVRWEF
Sbjct: 1097 FAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPVRLNQWCNVVRWEFK 1156
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
+P PF+R+REFLWQEGH+AFAT EA DEVLQILELY R+YEE LA+PV++G+K+E E
Sbjct: 1157 HPQPFLRTREFLWQEGHSAFATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKE 1214
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| UNIPROTKB|G3X6L9 EPRS "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 6.5e-114, Sum P(2) = 6.5e-114
Identities = 127/178 (71%), Positives = 157/178 (88%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYD+SGCYI+RPWA SIWE+++ FFDAEIKK+ ++NCYFP+FVS L+KEK HI
Sbjct: 1036 MIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHIAD 1095
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT+SG+++L PIAIRPTSETVMYP ++KW++ HRDLP+KLNQWCNVVRWEF
Sbjct: 1096 FAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPVKLNQWCNVVRWEFK 1155
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
+P PF+R+REFLWQEGH+AFAT EA +EVLQIL+LY R+YEE LA+PV+KG+K+E E
Sbjct: 1156 HPQPFLRTREFLWQEGHSAFATFEEAAEEVLQILDLYARVYEELLAIPVVKGRKTEKE 1213
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| RGD|1310952 Eprs "glutamyl-prolyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 2.0e-113, Sum P(2) = 2.0e-113
Identities = 126/178 (70%), Positives = 158/178 (88%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYD+SGCYI+RPW+ SIWE+++ FFDAEIKK+ ++NCYFP+FVS L+KEK+HI
Sbjct: 1011 MIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQGALEKEKNHIAD 1070
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT+SG+++L PIAIRPTSETVMYP ++KW++ HRDLP++LNQWCNVVRWEF
Sbjct: 1071 FAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFK 1130
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
+P PF+R+REFLWQEGH+AFAT EA DEVLQILELY R+YEE LA+PV++G+K+E E
Sbjct: 1131 HPQPFLRTREFLWQEGHSAFATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKE 1188
|
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| UNIPROTKB|F1LMJ9 Eprs "Protein Eprs" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 2.2e-113, Sum P(2) = 2.2e-113
Identities = 126/178 (70%), Positives = 158/178 (88%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYD+SGCYI+RPW+ SIWE+++ FFDAEIKK+ ++NCYFP+FVS L+KEK+HI
Sbjct: 1037 MIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQGALEKEKNHIAD 1096
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT+SG+++L PIAIRPTSETVMYP ++KW++ HRDLP++LNQWCNVVRWEF
Sbjct: 1097 FAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFK 1156
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
+P PF+R+REFLWQEGH+AFAT EA DEVLQILELY R+YEE LA+PV++G+K+E E
Sbjct: 1157 HPQPFLRTREFLWQEGHSAFATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKE 1214
|
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| ZFIN|ZDB-GENE-030131-638 eprs "glutamyl-prolyl-tRNA synthetase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 3.9e-113, Sum P(2) = 3.9e-113
Identities = 123/178 (69%), Positives = 157/178 (88%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEYYD+SGCY++RPW+ SIW+ +++FFD EIKK+ ++NCYFP+FVS L+KEK HI
Sbjct: 1208 MIEYYDVSGCYVLRPWSYSIWDAIKEFFDREIKKLGVENCYFPMFVSQAALEKEKTHIAD 1267
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT+SG+++L PIA+RPTSETVMYP ++KW++ HRDLP+KLNQWCNVVRWEF
Sbjct: 1268 FAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFK 1327
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
+P PF+R+REFLWQEGHTAFATK EA +EVLQIL+LY R+YEE +A+PV+KG+K+E E
Sbjct: 1328 HPQPFLRTREFLWQEGHTAFATKEEATEEVLQILDLYARVYEELMAIPVVKGRKTEKE 1385
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A5I768 | SYP_CLOBH | 6, ., 1, ., 1, ., 1, 5 | 0.3665 | 0.9678 | 0.8179 | yes | no |
| Q63GI2 | SYP2_BACCZ | 6, ., 1, ., 1, ., 1, 5 | 0.3731 | 0.9678 | 0.8214 | yes | no |
| A7FYU0 | SYP_CLOB1 | 6, ., 1, ., 1, ., 1, 5 | 0.3665 | 0.9678 | 0.8179 | yes | no |
| C4ZC24 | SYP_EUBR3 | 6, ., 1, ., 1, ., 1, 5 | 0.3671 | 0.9653 | 0.8141 | yes | no |
| B1L224 | SYP_CLOBM | 6, ., 1, ., 1, ., 1, 5 | 0.3709 | 0.9678 | 0.8179 | yes | no |
| B0R3A3 | SYP_HALS3 | 6, ., 1, ., 1, ., 1, 5 | 0.3467 | 0.9950 | 0.8023 | yes | no |
| Q6HNZ7 | SYP2_BACHK | 6, ., 1, ., 1, ., 1, 5 | 0.3687 | 0.9678 | 0.8214 | yes | no |
| B1IFI2 | SYP_CLOBK | 6, ., 1, ., 1, ., 1, 5 | 0.3644 | 0.9678 | 0.8179 | yes | no |
| C1FM10 | SYP_CLOBJ | 6, ., 1, ., 1, ., 1, 5 | 0.3665 | 0.9678 | 0.8179 | yes | no |
| Q73E50 | SYP2_BACC1 | 6, ., 1, ., 1, ., 1, 5 | 0.3709 | 0.9678 | 0.8214 | yes | no |
| B3EE36 | SYP_CHLL2 | 6, ., 1, ., 1, ., 1, 5 | 0.3600 | 0.9900 | 0.8316 | yes | no |
| Q9HS52 | SYP_HALSA | 6, ., 1, ., 1, ., 1, 5 | 0.3467 | 0.9950 | 0.8023 | yes | no |
| B2A5T8 | SYP_NATTJ | 6, ., 1, ., 1, ., 1, 5 | 0.3671 | 0.9727 | 0.8136 | yes | no |
| Q72GF9 | SYP_THET2 | 6, ., 1, ., 1, ., 1, 5 | 0.3733 | 0.9480 | 0.8029 | yes | no |
| A0R9A0 | SYP2_BACAH | 6, ., 1, ., 1, ., 1, 5 | 0.3709 | 0.9678 | 0.8214 | yes | no |
| Q81IE9 | SYP2_BACCR | 6, ., 1, ., 1, ., 1, 5 | 0.3731 | 0.9678 | 0.8214 | yes | no |
| Q5SM28 | SYP_THET8 | 6, ., 1, ., 1, ., 1, 5 | 0.3711 | 0.9480 | 0.8029 | yes | no |
| Q8ESQ5 | SYP_OCEIH | 6, ., 1, ., 1, ., 1, 5 | 0.3782 | 0.9678 | 0.8179 | yes | no |
| A5UU62 | SYP_ROSS1 | 6, ., 1, ., 1, ., 1, 5 | 0.3580 | 0.9603 | 0.8083 | yes | no |
| Q9L4Q8 | SYP_CLOSD | 6, ., 1, ., 1, ., 1, 5 | 0.3690 | 0.9603 | 0.8066 | yes | no |
| Q18CD7 | SYP2_CLOD6 | 6, ., 1, ., 1, ., 1, 5 | 0.3557 | 0.9727 | 0.8170 | yes | no |
| B4S9D5 | SYP_PROA2 | 6, ., 1, ., 1, ., 1, 5 | 0.3497 | 0.9777 | 0.8212 | yes | no |
| C4Z1D7 | SYP_EUBE2 | 6, ., 1, ., 1, ., 1, 5 | 0.3687 | 0.9702 | 0.8183 | yes | no |
| A8MLB3 | SYP_ALKOO | 6, ., 1, ., 1, ., 1, 5 | 0.3817 | 0.9702 | 0.8166 | yes | no |
| B3EP23 | SYP_CHLPB | 6, ., 1, ., 1, ., 1, 5 | 0.3492 | 0.9900 | 0.8316 | yes | no |
| A0Q2I3 | SYP_CLONN | 6, ., 1, ., 1, ., 1, 5 | 0.3774 | 0.9678 | 0.8179 | yes | no |
| B4SG51 | SYP_PELPB | 6, ., 1, ., 1, ., 1, 5 | 0.3492 | 0.9900 | 0.8316 | yes | no |
| B3ER64 | SYP_AMOA5 | 6, ., 1, ., 1, ., 1, 5 | 0.3494 | 0.9801 | 0.8065 | yes | no |
| Q3ASP3 | SYP_CHLCH | 6, ., 1, ., 1, ., 1, 5 | 0.3405 | 0.9900 | 0.8316 | yes | no |
| C3KUV8 | SYP_CLOB6 | 6, ., 1, ., 1, ., 1, 5 | 0.3687 | 0.9678 | 0.8179 | yes | no |
| B3QPX3 | SYP_CHLP8 | 6, ., 1, ., 1, ., 1, 5 | 0.3492 | 0.9900 | 0.8316 | yes | no |
| Q3IS99 | SYP_NATPD | 6, ., 1, ., 1, ., 1, 5 | 0.3405 | 0.9826 | 0.8236 | yes | no |
| Q5V5H0 | SYP_HALMA | 6, ., 1, ., 1, ., 1, 5 | 0.3362 | 0.9851 | 0.8223 | yes | no |
| A7GIT0 | SYP_CLOBL | 6, ., 1, ., 1, ., 1, 5 | 0.3644 | 0.9678 | 0.8179 | yes | no |
| B3QYP1 | SYP_CHLT3 | 6, ., 1, ., 1, ., 1, 5 | 0.3390 | 0.9777 | 0.8212 | yes | no |
| Q8KCD1 | SYP_CHLTE | 6, ., 1, ., 1, ., 1, 5 | 0.3514 | 0.9900 | 0.8316 | yes | no |
| B8I5R4 | SYP_CLOCE | 6, ., 1, ., 1, ., 1, 5 | 0.3839 | 0.9678 | 0.8179 | yes | no |
| A7NKX0 | SYP_ROSCS | 6, ., 1, ., 1, ., 1, 5 | 0.3515 | 0.9603 | 0.8083 | yes | no |
| A9KL35 | SYP_CLOPH | 6, ., 1, ., 1, ., 1, 5 | 0.3557 | 0.9653 | 0.8176 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.15 | 0.824 |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00021932 | SubName- Full=Putative uncharacterized protein; (498 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_fgenesh4_pg.C_LG_IX0484 | phenylalanyl-tRNA synthetase alpha chain (EC-6.1.1.20) (484 aa) | • | • | 0.800 | ||||||
 | estExt_Genewise1_v1.C_LG_II3255 | arginine-tRNA ligase (EC-6.1.1.19) (590 aa) | • | • | • | • | 0.743 | ||||
 | gw1.XI.1444.1 | aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa) | • | • | 0.701 | ||||||
 | gw1.28.724.1 | histidine-tRNA ligase (EC-6.1.1.21) (441 aa) | • | • | 0.675 | ||||||
 | fgenesh4_pm.C_LG_XVIII000153 | cysteine-tRNA ligase (EC-6.1.1.16) (493 aa) | • | • | 0.663 | ||||||
 | fgenesh4_pg.C_LG_II002297 | aminoacyl-tRNA ligase (EC-6.1.1.9) (951 aa) | • | • | 0.619 | ||||||
 | gw1.X.3221.1 | hypothetical protein (345 aa) | • | • | 0.607 | ||||||
 | eugene3.01500038 | aminoacyl-tRNA ligase (EC-6.1.1.4) (1068 aa) | • | • | • | • | 0.603 | ||||
 | fgenesh4_pm.C_LG_VIII000033 | hypothetical protein (352 aa) | • | • | 0.602 | ||||||
 | estExt_fgenesh4_pg.C_LG_IX0259 | alanyl-tRNA synthetase (EC-6.1.1.7) (994 aa) | • | • | 0.601 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 404 | |||
| PRK08661 | 477 | PRK08661, PRK08661, prolyl-tRNA synthetase; Provis | 0.0 | |
| cd00778 | 261 | cd00778, ProRS_core_arch_euk, Prolyl-tRNA syntheta | 1e-111 | |
| COG0442 | 500 | COG0442, ProS, Prolyl-tRNA synthetase [Translation | 1e-108 | |
| cd00862 | 202 | cd00862, ProRS_anticodon_zinc, ProRS Prolyl-antico | 4e-89 | |
| TIGR00408 | 472 | TIGR00408, proS_fam_I, prolyl-tRNA synthetase, fam | 3e-81 | |
| TIGR00408 | 472 | TIGR00408, proS_fam_I, prolyl-tRNA synthetase, fam | 3e-57 | |
| cd00772 | 264 | cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS | 7e-51 | |
| cd00670 | 235 | cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro | 4e-26 | |
| pfam09180 | 68 | pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-te | 5e-23 | |
| smart00946 | 67 | smart00946, ProRS-C_1, Prolyl-tRNA synthetase, C-t | 7e-22 | |
| pfam03129 | 93 | pfam03129, HGTP_anticodon, Anticodon binding domai | 1e-20 | |
| pfam00587 | 171 | pfam00587, tRNA-synt_2b, tRNA synthetase class II | 2e-17 | |
| PRK09194 | 565 | PRK09194, PRK09194, prolyl-tRNA synthetase; Provis | 8e-15 | |
| cd00738 | 94 | cd00738, HGTP_anticodon, HGTP anticodon binding do | 2e-10 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 3e-10 | |
| PRK12325 | 439 | PRK12325, PRK12325, prolyl-tRNA synthetase; Provis | 3e-09 | |
| COG0441 | 589 | COG0441, ThrS, Threonyl-tRNA synthetase [Translati | 5e-09 | |
| cd00860 | 91 | cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon | 2e-06 | |
| TIGR00409 | 568 | TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa | 4e-05 | |
| cd00779 | 255 | cd00779, ProRS_core_prok, Prolyl-tRNA synthetase ( | 5e-05 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 6e-05 | |
| TIGR00418 | 563 | TIGR00418, thrS, threonyl-tRNA synthetase | 8e-05 | |
| PRK03991 | 613 | PRK03991, PRK03991, threonyl-tRNA synthetase; Vali | 1e-04 | |
| TIGR00409 | 568 | TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa | 2e-04 | |
| PRK12444 | 639 | PRK12444, PRK12444, threonyl-tRNA synthetase; Revi | 2e-04 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 3e-04 | |
| cd00861 | 94 | cd00861, ProRS_anticodon_short, ProRS Prolyl-antic | 5e-04 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 0.002 | |
| COG0441 | 589 | COG0441, ThrS, Threonyl-tRNA synthetase [Translati | 0.003 |
| >gnl|CDD|236327 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 525 bits (1354), Expect = 0.0
Identities = 194/461 (42%), Positives = 274/461 (59%), Gaps = 67/461 (14%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+ +Y + GC +++P+ +IWE +QK D K+ +N YFPL + ++L+KEK+H+EG
Sbjct: 27 LADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEG 86
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT G LE +A+RPTSET++YP + KWI+ +RDLPL NQW NVVRWE +
Sbjct: 87 FAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWE-T 145
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE-- 178
PF+R+REFLWQEGHTA AT+ EA++E L++LE+Y+ +E++LA+PVI GKK+E E
Sbjct: 146 KTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIPVIIGKKTEWEKF 205
Query: 179 --------------NSKFVQIG-------------------------------------- 186
+ K +Q G
Sbjct: 206 AGADYTYTIEAMMPDGKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYVHQTSWGVSTRL 265
Query: 187 --VMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
++M HGDDKGL+LPPK+A +QV+++P+ K+ + + + E+L +AGIR
Sbjct: 266 IGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKL 325
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
D R + +PGWK++ WE+KGVPLRIEIGP+DL N+ V VRRD K +P LVE+V E
Sbjct: 326 DDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPE 385
Query: 305 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALG-QRKMILAPWCDEEEVEKDVKARTK 363
LLEE+QE+L+ AK+ + V T +EF EA+ + + APWC +EE E+ +K T
Sbjct: 386 LLEEIQENLYEKAKEFLEENTVEVDTLEEFKEAIEEKGGFVKAPWCGDEECEEKIKEETG 445
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
A C PLEQ E C GKPAKK + ++Y
Sbjct: 446 -----ATIRCIPLEQ----EKGKCIVCGKPAKKRVLFAKAY 477
|
Length = 477 |
| >gnl|CDD|238401 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-111
Identities = 109/182 (59%), Positives = 140/182 (76%), Gaps = 2/182 (1%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+I+Y + GC + RP+ +IWE +QK D EIK+ +N YFPL + + L+KEK+HIEG
Sbjct: 15 LIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEG 74
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT G +LE P+A+RPTSET +YP FSKWIR +RDLPLK+NQW NV RWE
Sbjct: 75 FAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETK 134
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELENS 180
PF+R+REFLWQEGHTA AT+ EA++EVLQIL+LY+ YE+ LA+PV+KG+K+E E
Sbjct: 135 TTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEWE-- 192
Query: 181 KF 182
KF
Sbjct: 193 KF 194
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. Length = 261 |
| >gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-108
Identities = 127/475 (26%), Positives = 191/475 (40%), Gaps = 77/475 (16%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MI + G Y+ P + + E ++ E+ K+ Q FP + P L KE EG
Sbjct: 31 MIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLI-PAELWKESGRWEG 88
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F PE+ V G+ L A+RPTSE V+ F KWIR ++DLPLKL Q + R E
Sbjct: 89 FGPELFRVKDRGDRPL----ALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKR 144
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY------------------- 161
+R REFL ++ ++ A + +A++ ++L+ Y RI+
Sbjct: 145 PRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPADEGFIGG 204
Query: 162 ---EEF-----------------------LAVPVIKGKKSELENSKFV----------QI 185
EF A IK + E ++V I
Sbjct: 205 SYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGISTRII 264
Query: 186 GVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDAD-TQGIFDACTATVEKLCEAGIRANS 244
G +++HGD++GL+LPP VA +QV+++P+ K A+ + + E L + GIR
Sbjct: 265 GAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEG 324
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGA--KIDLPRGSLVER- 301
D R PG+K + WE V E+G K + RD K G V R
Sbjct: 325 DDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRL 384
Query: 302 VKELLEEVQESLFV---AAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDV 358
V LLE++ + + A D I V T D ++ + PWC EV D
Sbjct: 385 VAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDD 444
Query: 359 K-ARTKGEMGAAKTLCSPLEQPEVP---EGTL---CFASGKPAK--KWTYWGRSY 404
+ R + A + PL EG + C G+ + R Y
Sbjct: 445 RDERPGVKFADADLIGIPLRIVVGKRLAEGEVEVKCRKCGEKEAVTIEALFARLY 499
|
Length = 500 |
| >gnl|CDD|238439 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea | Back alignment and domain information |
|---|
Score = 268 bits (686), Expect = 4e-89
Identities = 99/208 (47%), Positives = 140/208 (67%), Gaps = 6/208 (2%)
Query: 197 GLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKY 256
GL+LPP+VA +QV+++P+ KD + + +A E+L AGIR + D RDNY+PGWK+
Sbjct: 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKF 60
Query: 257 SHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVA 316
+ WE+KGVPLRIEIGP+DL + V VRRD G K +P LVE+V ELL+E+QE L+
Sbjct: 61 NDWELKGVPLRIEIGPRDLEKNTVVIVRRDTGEKKTVPLAELVEKVPELLDEIQEDLYER 120
Query: 317 AKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPL 376
A + RDA +IV TW+EF EAL ++ ++LAPWC EEE E+++K T A LC P
Sbjct: 121 ALEFRDA-TRIVDTWEEFKEALNEKGIVLAPWCGEEECEEEIKEETA-----ATILCIPF 174
Query: 377 EQPEVPEGTLCFASGKPAKKWTYWGRSY 404
++ ++ EG C G+PAK + + +SY
Sbjct: 175 DEAKLEEGGKCVVCGRPAKAYARFAKSY 202
|
ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs. Length = 202 |
| >gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 3e-81
Identities = 87/182 (47%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+I+YY + GCY+ P+ IW+ +QK + ++ + YFP+ + + L KEKDHI+G
Sbjct: 21 IIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKG 80
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F PEV W+T G S L+ P+A+RPTSET MYP F KW++ + DLPLK+NQW NV R+E
Sbjct: 81 FEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETK 140
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELENS 180
+ PF+R+REF WQE HTA AT EA+++VL+ L++Y+ E LA+P G+K E E
Sbjct: 141 HTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEWE-- 198
Query: 181 KF 182
KF
Sbjct: 199 KF 200
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae [Protein synthesis, tRNA aminoacylation]. Length = 472 |
| >gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 3e-57
Identities = 84/221 (38%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 185 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
IG ++ +H D+KGL+LPP+VA +QV++IP+ +K + + + +A +L +AG R +
Sbjct: 261 IGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHI 320
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
D RDN PG K+ WE+KG+PLRIE+GP D+ + RRD G K + L ERV E
Sbjct: 321 DDRDN-RPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVE 379
Query: 305 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKARTK 363
LL +QE+L A +R + I IV+T +E +AL +++ ++L PWC EEE E+D+K + +
Sbjct: 380 LLNNIQENLRNRAWERFEQKIVIVETLEEIKQALNEKRGVVLVPWCGEEECEEDLKEKVQ 439
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
LC P + LC G+ A + R+Y
Sbjct: 440 -----VTILCIPEDG---DVLQLCIFCGRKAPDYVLIARTY 472
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae [Protein synthesis, tRNA aminoacylation]. Length = 472 |
| >gnl|CDD|238395 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 7e-51
Identities = 60/178 (33%), Positives = 94/178 (52%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+ + G P A +I + ++ D K+ QN FP F+ + L+KE +H EG
Sbjct: 15 LADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEG 74
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F+ E+A +G+ +LE A+RPT E + +K+I+ +DLP LNQ N R E
Sbjct: 75 FSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR 134
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
F+R+REF+ ++GH+A A EAD+E L +L Y I + A+ I+G+ E
Sbjct: 135 PRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGA 192
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. Length = 264 |
| >gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-26
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Query: 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79
+W +++F D + + Q FP PTVL + H++G+ E+ G +
Sbjct: 4 LWRALERFLDDRMAEYGYQEILFPFLA-PTVLFFKGGHLDGYRKEMYTFEDKGRELRDTD 62
Query: 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTA 139
+ +RP + +Y FS I +R LPL+L+Q R E S +R REF E
Sbjct: 63 LVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVV- 121
Query: 140 FATKSEADDEVLQILELYRRIYEEF 164
F EA++E + LEL I E
Sbjct: 122 FGEPEEAEEERREWLELAEEIAREL 146
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 235 |
| >gnl|CDD|220134 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 5e-23
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 331 WDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFAS 390
+EF +AL + +LAPWC EE E+ +K T A C P +Q E PEG C
Sbjct: 1 LEEFKKALNKGGFVLAPWCGTEECEEKIKEETG-----ATIRCIPFDQQE-PEGGKCIFC 54
Query: 391 GKPAKKWTYWGRSY 404
GKPAKKW + RSY
Sbjct: 55 GKPAKKWVLFARSY 68
|
Members of this family are predominantly found in prokaryotic prolyl-tRNA synthetase. They contain a zinc binding site, and adopt a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif. Length = 68 |
| >gnl|CDD|198014 smart00946, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 7e-22
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 331 WDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFAS 390
+EF +AL + K +LAPWC +EE E+ +K T A C P +Q E P C
Sbjct: 1 LEEFKKALEEGKFVLAPWCGDEECEEKIKEETG-----ATIRCIPFDQDEEPGK--CVVC 53
Query: 391 GKPAKKWTYWGRSY 404
GKPAKKW + RSY
Sbjct: 54 GKPAKKWVLFARSY 67
|
Members of this family are predominantly found in prokaryotic prolyl-tRNA synthetase. They contain a zinc binding site, and adopt a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif. Length = 67 |
| >gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-20
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLR 267
QV+VIP+ KD + D E+L EAGIR D R N S G K+ ++ G+P R
Sbjct: 1 QVVVIPLGEKD----ELEDYAQKLAEELREAGIRVELDDR-NESLGKKFRDADLIGIPFR 55
Query: 268 IEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 305
+ +G K+L N V RD G K + LVE++KEL
Sbjct: 56 LVVGEKELENGTVTVRDRDTGEKETVSLEELVEKLKEL 93
|
This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases it is probably the anticodon binding domain. Length = 93 |
| >gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-17
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 5/145 (3%)
Query: 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79
+ ++ F +K+ Q P+ + + + F E+ G +L
Sbjct: 1 LRNALENFIRELLKRYGYQEVDTPILEPKELWEGSGHWDDYFEEEMYKFKDRGGEEL--- 57
Query: 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTA 139
+RPT+E + F I +R+LPLKL Q R+E R REF +
Sbjct: 58 -YLRPTAEVGITRLFKNEILSYRELPLKLYQIGPCFRYEARPRRGLGRVREFTQVDAEI- 115
Query: 140 FATKSEADDEVLQILELYRRIYEEF 164
F T ++++E+ ++L+L I ++
Sbjct: 116 FGTPEQSEEELEELLKLAEEILQDL 140
|
Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 171 |
| >gnl|CDD|236405 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 8e-15
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 192 HGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYS 251
+ D+KG++ P +A V ++PV KD + + + +L AGI D R
Sbjct: 454 NHDEKGIIWPKAIAPFDVHIVPVNMKDEE---VKELAEKLYAELQAAGIEVLLDDRKE-R 509
Query: 252 PGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306
PG K++ ++ G+P RI +G + LA V R G K ++P LVE +K L
Sbjct: 510 PGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLKALK 564
|
Length = 565 |
| >gnl|CDD|238379 cd00738, HGTP_anticodon, HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-10
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPL 266
+ V ++P+ + + L GIR D R+ G K+ +++GVP
Sbjct: 2 IDVAIVPL---TDPRVEAREYAQKLLNALLANGIRVLYDDRER-KIGKKFREADLRGVPF 57
Query: 267 RIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVE 300
+ +G +L N +V RD G L L E
Sbjct: 58 AVVVGEDELENGKVTVKSRDTGESETLHVDELPE 91
|
In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Length = 94 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-10
Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 31/194 (15%)
Query: 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79
I +++ + ++ Q P+ +L+K + ++ E
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHE---PKDLLP-----VGAENEED 52
Query: 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTA 139
+ +RPT E + F IR LPL+L + R E R REF EG
Sbjct: 53 LYLRPTLEPGLVRLFVSHIR---KLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVF 108
Query: 140 FATKSEADDEVLQILELYRRIYEEF----LAVPVIK----------GKKSELE----NSK 181
E E +++EL + V V K G E+E +
Sbjct: 109 GED-GEEASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAGPGFEIEVDHPEGR 167
Query: 182 FVQIGVMVMVHGDD 195
++IG +
Sbjct: 168 GLEIGSGGYRQDEQ 181
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|237059 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 185 IGVMVMV------HGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEA 238
IGV +V DDKG++ P VA +V +I + D AC L A
Sbjct: 318 IGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDA---ACEKLYAALSAA 374
Query: 239 GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298
GI D D PG K++ ++ G+P +I +GPK LA +V R G + +L +
Sbjct: 375 GIDVLYDDTDE-RPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGEREELSVEAA 433
Query: 299 VERVKE 304
+ R+
Sbjct: 434 INRLTA 439
|
Length = 439 |
| >gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 199 MLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSH 258
LP +A VQV VIPV + D EKL +AGIR + D R+ G K
Sbjct: 480 ALPTWLAPVQVRVIPVADEHLD------YAKEVAEKLRKAGIRVDIDDRNE-KLGKKIRE 532
Query: 259 WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308
+ +P I +G K++ V RR + + LVE +K+ +E
Sbjct: 533 AGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEG 582
|
Length = 589 |
| >gnl|CDD|238437 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-06
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPL 266
VQV+VIPV T D +KL +AGIR D R+ G K +++ +P
Sbjct: 2 VQVVVIPV------TDEHLDYAKEVAKKLSDAGIRVEVDLRNE-KLGKKIREAQLQKIPY 54
Query: 267 RIEIGPKDLANDQVRAVR-RDNGAKIDLPRGSLVERVK 303
+ +G K++ V +VR RD G + +E++K
Sbjct: 55 ILVVGDKEVETGTV-SVRTRDGGDLGSMSLDEFIEKLK 91
|
ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. Length = 91 |
| >gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 185 IGVMVMV------HGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEA 238
IGV +V H D++G++ P +A V+++ + KD + Q + + + L
Sbjct: 446 IGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKDEEQQQLAEELYSE---LLAQ 502
Query: 239 GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298
G+ D R N G K++ E+ G+PLR+ +G K+L N ++ +R NG K + + L
Sbjct: 503 GVDVLLDDR-NERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDEL 561
Query: 299 VERVKE 304
VE ++E
Sbjct: 562 VECLEE 567
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi [Protein synthesis, tRNA aminoacylation]. Length = 568 |
| >gnl|CDD|238402 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 42/199 (21%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 67
SG Y P + + + ++ E+ K+ Q P + P L KE + + PE+
Sbjct: 21 SGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMP-ILQPAELWKESGRWDAYGPELLR 79
Query: 68 VTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTP-- 124
+ + + PT E V+ + I+ ++ LPL L Q ++ +F + P
Sbjct: 80 LKDRHGKEF----LLGPTHEEVITDLVANEIKSYKQLPLNLYQ----IQTKFRDEIRPRF 131
Query: 125 -FIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIK---------GKK 174
+R REFL ++ ++ + ++ ++ + Y RI++ L +P +K G
Sbjct: 132 GLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKR-LGLPFVKVEADSGAIGGSL 190
Query: 175 S-------ELENSKFVQIG 186
S L+ +K +++G
Sbjct: 191 SHEFHVLSPLKITKGIEVG 209
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. Length = 255 |
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 6e-05
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 200 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW 259
P +A VQV+V+P+ D D +KL AGIR D R N G+K
Sbjct: 533 FPTWLAPVQVVVLPI----TDKHA--DYAKEVAKKLKAAGIRVEVDLR-NEKIGYKIREA 585
Query: 260 EMKGVPLRIEIGPKDLANDQVRAVR-RDNGAKIDLPRGSLVERVKE 304
+++ VP + +G K++ V +VR R + +ER+ E
Sbjct: 586 QLQKVPYMLVVGDKEVEAGTV-SVRRRGGKDLGTMSLDEFIERLLE 630
|
Length = 638 |
| >gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 199 MLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSH 258
P +A VQV+VIPV + D +KL +AGIR + D R+ G K
Sbjct: 463 NFPLWLAPVQVVVIPV------NERHLDYAKKVAQKLKKAGIRVDVDDRNE-RLGKKIRE 515
Query: 259 WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
+ + +P + +G K++ + V R + +E+++
Sbjct: 516 AQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLR 560
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether. [Protein synthesis, tRNA aminoacylation]. Length = 563 |
| >gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 199 MLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSH 258
MLP ++ QV VIPV ++ D +KL AGIR + D RD S G K
Sbjct: 492 MLPTWLSPTQVRVIPV------SERHLDYAEEVADKLEAAGIRVDVDDRDE-SLGKKIRD 544
Query: 259 WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307
+ +P + IG K++ + ++ R+ K+++ L+ER+KE +
Sbjct: 545 AGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETK 593
|
Length = 613 |
| >gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 7/155 (4%)
Query: 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 67
SG Y P + + + ++ E+ K P P L +E + + PE+
Sbjct: 37 SGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPAL-QPAELWQESGRWDTYGPELLR 95
Query: 68 VTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 127
+ + + PT E V+ I+ ++ LPL L Q R E +R
Sbjct: 96 LKDRKGREF----VLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMR 151
Query: 128 SREFLWQEGHTAFATKSEADDEVLQIL-ELYRRIY 161
REF+ ++ ++ F + E+ D Q + + Y I+
Sbjct: 152 GREFIMKDAYS-FHSDEESLDATYQKMYQAYSNIF 185
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi [Protein synthesis, tRNA aminoacylation]. Length = 568 |
| >gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 201 PPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWE 260
P +A VQV VIPV +KL +AGIR D RD G+K +
Sbjct: 536 PAWLAPVQVKVIPVSNAVHV-----QYADEVADKLAQAGIRVERDERDE-KLGYKIREAQ 589
Query: 261 MKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308
M+ +P + IG K++ N V + + VE +KE ++
Sbjct: 590 MQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIKN 637
|
Length = 639 |
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 200 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW 259
P +A VQV++IPV AD + +KL AGIR D + K +
Sbjct: 470 FPFWLAPVQVVIIPV----ADAHN--EYAEEVAKKLRAAGIRVEVDTSNE-RLNKKIRNA 522
Query: 260 EMKGVPLRIEIGPKDLANDQVRAVR-RDNGAKIDLPRGSLVERVKELLEEV 309
+ + +P + +G K++ V +VR RD +P +E +KE + E
Sbjct: 523 QKQKIPYMLVVGDKEVEAGTV-SVRTRDGEQLNGMPLDEFIELIKEKIAER 572
|
Length = 575 |
| >gnl|CDD|238438 cd00861, ProRS_anticodon_short, ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 5e-04
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 208 QVIVIPVPYKDADTQGIFDACTATVEK----LCEAGIRANSDFRDNYSPGWKYSHWEMKG 263
V++IP+ KD EK L AG+ D R+ PG K++ ++ G
Sbjct: 3 DVVIIPMNMKDE-------VQQELAEKLYAELQAAGVDVLLDDRNE-RPGVKFADADLIG 54
Query: 264 VPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
+P RI +G K A V R G K ++ L+E ++
Sbjct: 55 IPYRIVVGKKSAAEGIVEIKVRKTGEKEEISIDELLEFLQ 94
|
ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. Length = 94 |
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 98 IRGHRDLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILEL 156
+R +RDLPL+L ++ V R+E S R R F + H F T + +DE+L++L+
Sbjct: 281 LRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDF 339
Query: 157 YRRIYEEF 164
+ ++F
Sbjct: 340 VLELLKDF 347
|
Length = 575 |
| >gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 8/158 (5%)
Query: 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 67
G P +I ++ + +++ Y + +P + E + G
Sbjct: 210 PGLPFWHPKGATIRNLLEDYVRTKLRSYG----YQEV-KTPVLADLELWELSGHWDNYKE 264
Query: 68 VTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP-TPFI 126
ESD A++P + F +R +R+LPL+L ++ V R+E S +
Sbjct: 265 DMFLTESDDRE-YALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLM 323
Query: 127 RSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164
R R F + H F T + DE ILEL +Y++F
Sbjct: 324 RVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVYKDF 360
|
Length = 589 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 404 | |||
| KOG4163 | 551 | consensus Prolyl-tRNA synthetase [Translation, rib | 100.0 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 100.0 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 100.0 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 100.0 | |
| cd00862 | 202 | ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin | 100.0 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 100.0 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 100.0 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 100.0 | |
| PLN02837 | 614 | threonine-tRNA ligase | 100.0 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 100.0 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 100.0 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 100.0 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 100.0 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 100.0 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 100.0 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 100.0 | |
| PLN02530 | 487 | histidine-tRNA ligase | 100.0 | |
| KOG1637 | 560 | consensus Threonyl-tRNA synthetase [Translation, r | 100.0 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00389 | 551 | glyS_dimeric glycyl-tRNA synthetase, dimeric type. | 100.0 | |
| PLN02734 | 684 | glycyl-tRNA synthetase | 100.0 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 100.0 | |
| PRK14894 | 539 | glycyl-tRNA synthetase; Provisional | 100.0 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 100.0 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 100.0 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 100.0 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 100.0 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translatio | 100.0 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 100.0 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 100.0 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 100.0 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 100.0 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 100.0 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 100.0 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 99.97 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 99.97 | |
| KOG2298 | 599 | consensus Glycyl-tRNA synthetase and related class | 99.96 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 99.95 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 99.95 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 99.93 | |
| cd02426 | 128 | Pol_gamma_b_Cterm C-terminal domain of mitochondri | 99.93 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 99.91 | |
| PF09180 | 68 | ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; Int | 99.91 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 99.9 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 99.87 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 99.87 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 99.86 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 99.85 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 99.84 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 99.81 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 99.77 | |
| cd00858 | 121 | GlyRS_anticodon GlyRS Glycyl-anticodon binding dom | 99.77 | |
| PF03129 | 94 | HGTP_anticodon: Anticodon binding domain; InterPro | 99.77 | |
| cd00861 | 94 | ProRS_anticodon_short ProRS Prolyl-anticodon bindi | 99.73 | |
| PRK14938 | 387 | Ser-tRNA(Thr) hydrolase; Provisional | 99.7 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 99.7 | |
| KOG2509 | 455 | consensus Seryl-tRNA synthetase [Translation, ribo | 99.67 | |
| cd00860 | 91 | ThrRS_anticodon ThrRS Threonyl-anticodon binding d | 99.65 | |
| cd00738 | 94 | HGTP_anticodon HGTP anticodon binding domain, as f | 99.57 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.53 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.53 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 99.4 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.38 | |
| cd00859 | 91 | HisRS_anticodon HisRS Histidyl-anticodon binding d | 99.3 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 99.24 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 99.13 | |
| PRK07080 | 317 | hypothetical protein; Validated | 98.88 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 98.83 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 98.81 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 98.78 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 98.41 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 98.35 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 98.31 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 98.16 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 98.15 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 98.14 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 98.1 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 98.06 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 98.05 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 98.03 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 98.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 97.98 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 97.98 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 97.98 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 97.93 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 97.92 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 97.91 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 97.9 | |
| PF12745 | 273 | HGTP_anticodon2: Anticodon binding domain of tRNAs | 97.9 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 97.89 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 97.89 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 97.82 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 97.82 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 97.81 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 97.8 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 97.79 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 97.74 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 97.72 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 97.66 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 97.63 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 97.58 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 97.56 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 97.52 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 97.41 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 97.33 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 97.18 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 97.14 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 97.0 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 96.84 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 96.72 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 96.11 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 96.06 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 95.59 | |
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 95.57 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 95.28 | |
| PF09181 | 68 | ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; Int | 94.6 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 93.86 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 92.47 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 90.97 | |
| TIGR00471 | 551 | pheT_arch phenylalanyl-tRNA synthetase, beta subun | 89.94 | |
| PRK06253 | 529 | O-phosphoseryl-tRNA synthetase; Reviewed | 89.1 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 88.81 | |
| PLN02265 | 597 | probable phenylalanyl-tRNA synthetase beta chain | 87.3 |
| >KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-119 Score=867.35 Aligned_cols=402 Identities=67% Similarity=1.215 Sum_probs=389.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+||++++|||+++|++++||+.|+.+++..+++.|++++|||+|++.++++++..|+++|+||+.|||..|+.+|++++
T Consensus 81 mieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepi 160 (551)
T KOG4163|consen 81 MIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPI 160 (551)
T ss_pred hheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
++|||||++|+++|++|++||||||||+|||+||.|||.+++.||||+|||+|||+|++|++.++|++|+.+|+++|.++
T Consensus 161 aiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~v 240 (551)
T KOG4163|consen 161 AIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARV 240 (551)
T ss_pred eeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc------------------------------cH----------------------------
Q 015587 161 YEEFLAVPVIKGKKSELENS------------------------------KF---------------------------- 182 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf------------------------------~F---------------------------- 182 (404)
|.+++++||+.|.|++.|+| ||
T Consensus 241 y~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~~~fv~QnSWg~sT 320 (551)
T KOG4163|consen 241 YEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVFEDPGEGEKEFVWQNSWGLST 320 (551)
T ss_pred HHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhceeecCCCccchhheeeccccccc
Confidence 99999999999999999998 34
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCC----ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDA----DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSH 258 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~----~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ 258 (404)
|.||+|+|+||||+||+|||++||+||+|||++-++. +.+.+.++|..+.++|..+|||++.|+|+++++||||++
T Consensus 321 RtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnh 400 (551)
T KOG4163|consen 321 RTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNH 400 (551)
T ss_pred ceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccc
Confidence 9999999999999999999999999999999986543 246788999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHh
Q 015587 259 WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEAL 338 (404)
Q Consensus 259 ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~ 338 (404)
|+++|||+||+|||+|+++++|++.+||+++|.+|++++|+..|+++|++||.+||++|++.+++|++.|++|+||+++|
T Consensus 401 wElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~elLe~iq~~m~~kA~~~rds~~~~v~~~~eF~~aL 480 (551)
T KOG4163|consen 401 WELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKELLEKIQTNLYEKAKEKRDSHIVKVNTWEEFVKAL 480 (551)
T ss_pred eeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeeeHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecCCChhHHHHHHHhhcCC-------cCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 339 GQRKMILAPWCDEEEVEKDVKARTKGE-------MGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 339 ~~~~~~~~pwc~~~~~e~~ik~~~~~~-------~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
++|+++++||||+.+||++||+.+++. +|||++|||||+|+. .+.+|++||++|+.|+||||||
T Consensus 481 ~~k~iilaPwcg~~ecE~~IK~~s~r~e~ge~apsmGAKtlCiPf~qpe--~~~kcl~cg~~ak~~~lfGRSY 551 (551)
T KOG4163|consen 481 DQKKIILAPWCGEIECEKDIKKRTARDEDGEEAPSMGAKTLCIPFEQPE--LGEKCLCCGKPAKKYTLFGRSY 551 (551)
T ss_pred ccCCEEEccccCcHHHHHHHHhhhccccCCCCcccCCceeeeecCCCCC--CccceeccCCccceEEEecccC
Confidence 999999999999999999999999763 689999999999995 4568999999999999999999
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-97 Score=768.11 Aligned_cols=394 Identities=49% Similarity=0.926 Sum_probs=371.2
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+|+++++|+++|+|.|+++|++|++++++.++++||++|+||+|+|.++|.+++||+++|.++||+|++.|+.++++++
T Consensus 27 l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l 106 (477)
T PRK08661 27 LADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKL 106 (477)
T ss_pred CcccCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceE
Confidence 57888899999999999999999999999999999999999999999999988899999999999999999887788999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|++++.+|++|++||+|||+|+|||++|||||.+ ++||+|+|||+|+|+|++|++.++|++|+..++++|.++
T Consensus 107 ~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i 185 (477)
T PRK08661 107 ALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEF 185 (477)
T ss_pred EEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 889999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------HH
Q 015587 161 YEEFLAVPVIKGKKSELENS-----------------------------KF---------------------------VQ 184 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf-----------------------------~F---------------------------Rl 184 (404)
|++.+++|+.+|.++++++| +| |+
T Consensus 186 ~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~dgr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~G~~~R~ 265 (477)
T PRK08661 186 FEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPDGKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYVHQTSWGVSTRL 265 (477)
T ss_pred HHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCCCCEEEEEEecccccchhHhcCCEEECCCCCEeeeEEecccHHHHH
Confidence 94444699999988766665 11 99
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCC
Q 015587 185 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 264 (404)
Q Consensus 185 i~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~Gv 264 (404)
|++|+|+|+|++|++||+++||+||+|+|+..++.+.+++.++|.+|++.|+++|+||++|+|.+.++|+||++|+++|+
T Consensus 266 i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~ae~~Gv 345 (477)
T PRK08661 266 IGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGV 345 (477)
T ss_pred HHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999999954322236788999999999999999999999545799999999999999
Q ss_pred CEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHh-cCCCE
Q 015587 265 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEAL-GQRKM 343 (404)
Q Consensus 265 P~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~-~~~~~ 343 (404)
|++|+||++|+++|+|+|++|+++++..++++++++.+.+++++||++||++|+++++++|+.++|||||+++| ++||+
T Consensus 346 P~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (477)
T PRK08661 346 PLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLEEIQENLYEKAKEFLEENTVEVDTLEEFKEAIEEKGGF 425 (477)
T ss_pred CEEEEECcchhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEcCCHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 77899
Q ss_pred EEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 344 ILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 344 ~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
|++||||+.+||++||++| ||++|||||+++ . .+|++||+||+.|++|||||
T Consensus 426 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~---~-~~c~~~~~~~~~~~~~~~~y 477 (477)
T PRK08661 426 VKAPWCGDEECEEKIKEET-----GATIRCIPLEQE---K-GKCIVCGKPAKKRVLFAKAY 477 (477)
T ss_pred EEEEecCCHHHHHHHHHHh-----CCEEEeEEcCCC---C-CcccccCCccceEEEEEEEC
Confidence 9999999999999999999 999999999886 2 36999999999999999999
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-96 Score=759.19 Aligned_cols=395 Identities=43% Similarity=0.842 Sum_probs=369.8
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+++++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.++++|+++|.++||+|++.|++++++++
T Consensus 21 li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l 100 (472)
T TIGR00408 21 IIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPL 100 (472)
T ss_pred CccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcE
Confidence 57888999999999999999999999999999999999999999999999988888999999999999999988888999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|++++.+|++|++||++||+|+|||++|||||.++++||+|+|||+|+|+|++|++.++|..|+..++++|.++
T Consensus 101 ~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i 180 (472)
T TIGR00408 101 ALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEF 180 (472)
T ss_pred EEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------HH
Q 015587 161 YEEFLAVPVIKGKKSELENS-----------------------------KF---------------------------VQ 184 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf-----------------------------~F---------------------------Rl 184 (404)
|++.+++|+..+.++++++| +| |+
T Consensus 181 ~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~dgr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h~~s~Gi~eRl 260 (472)
T TIGR00408 181 IENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPDGRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAYQTSYGISTRV 260 (472)
T ss_pred HHhccCCeEEEEecCchhhcCCccceEEEeEEEcCCCEEEEeeeecccccccHhcCCEEECCCCCEEeeEEccccHHHHH
Confidence 98333589988877765654 11 99
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCC
Q 015587 185 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 264 (404)
Q Consensus 185 i~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~Gv 264 (404)
|++|+|+|+|+.|++||+++||+||+|+|+..++.+.++..++|.+|++.||++|++|++|+++. ++|+||++|+++|+
T Consensus 261 i~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~-s~gkk~k~Ae~~Gv 339 (472)
T TIGR00408 261 IGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDN-RPGRKFYQWEIKGI 339 (472)
T ss_pred HHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHCCC
Confidence 99999999999999999999999999999821111125688999999999999999999999984 99999999999999
Q ss_pred CEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCC-CE
Q 015587 265 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQR-KM 343 (404)
Q Consensus 265 P~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~-~~ 343 (404)
|++|+||++|+++|+|+|++|++++|..++++++++.+.++++++|++||+||++++++||+.++|||||+++++++ |+
T Consensus 340 P~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (472)
T TIGR00408 340 PLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVELLNNIQENLRNRAWERFEQKIVIVETLEEIKQALNEKRGV 419 (472)
T ss_pred CEEEEECcchhhCCeEEEEECCCCceEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEcCCHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999764 69
Q ss_pred EEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 344 ILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 344 ~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
|++||||+.+||++||++| |||+||||++++. +++|++||+||+.|++|||||
T Consensus 420 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~c~~~~~~~~~~~~~~~~y 472 (472)
T TIGR00408 420 VLVPWCGEEECEEDLKEKV-----QVTILCIPEDGDV---LQLCIFCGRKAPDYVLIARTY 472 (472)
T ss_pred EEEEecCCHHHHHHHHHHh-----CCeEeEEECCCCC---CCccCccCCcccEEEEEEEeC
Confidence 9999999999999999999 9999999998872 357999999999999999999
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-77 Score=604.92 Aligned_cols=394 Identities=31% Similarity=0.509 Sum_probs=348.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+++ +++|+|.|+|.|+++|++|++++|+.+++.|++|+.+|+|+|.+|| +|+|||++|++||||++|+|+ +++
T Consensus 31 ~i~~-~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLw-kEs~r~~~f~~El~~v~drg~----~~l 104 (500)
T COG0442 31 MIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELW-KESGRWEGFGPELFRVKDRGD----RPL 104 (500)
T ss_pred ceec-ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHH-HHhChhhhcchhhEEEEccCC----cee
Confidence 4556 9999999999999999999999999999999999999999997776 899999999999999999997 999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||||+.|+.++++|++||+|||+++|||+++||||.||++||||.|||+|+|+|+||++.++|++++..+.++|.+|
T Consensus 105 ~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~i 184 (500)
T COG0442 105 ALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRI 184 (500)
T ss_pred eeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc-----------------------------cH-----------------------------
Q 015587 161 YEEFLAVPVIKGKKSELENS-----------------------------KF----------------------------- 182 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf-----------------------------~F----------------------------- 182 (404)
|.. +|+..+.++++++| ||
T Consensus 185 f~~---i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~ 261 (500)
T COG0442 185 FLR---LPLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGIST 261 (500)
T ss_pred HHh---CCceEEeecccCCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCccccccccceEecccceEEEe
Confidence 954 45444444433333 22
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCC-hhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDAD-TQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEM 261 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~-~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~ 261 (404)
|.+++++++||||.|+++||.+||.||+++|+..++.+ ......++..++..|...+++++.|+++..++|+|++.|+.
T Consensus 262 r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ 341 (500)
T COG0442 262 RIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEG 341 (500)
T ss_pred eeeeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeec
Confidence 88999999999999999999999999999998755321 22367889999999999999999997654699999999999
Q ss_pred cCCCEEEEECccccCCCeEEEEECCCCc--eeeechhhHHHH-HHHHHHHHH--HHHHHH-HHHHHHcCeeeccCHHHHH
Q 015587 262 KGVPLRIEIGPKDLANDQVRAVRRDNGA--KIDLPRGSLVER-VKELLEEVQ--ESLFVA-AKQRRDACIQIVKTWDEFV 335 (404)
Q Consensus 262 ~GvP~~iiIG~~E~~~~~V~v~~r~~~~--k~~v~~~el~~~-i~~~l~~~~--~~l~~~-a~~~~~~~~~~~~~~~e~~ 335 (404)
+|||.++.+|+++.++.++++.+|++.+ +..++...+++. +.++++.+| +.|+.+ |.+.++.+|+.+++- |++
T Consensus 342 ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~-~~~ 420 (500)
T COG0442 342 IEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTK-DFK 420 (500)
T ss_pred cccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCccccccCcceeEEEEcCch-hHH
Confidence 9999999999999999999999999998 889999999999 999999999 999999 999999999999988 555
Q ss_pred HHhc-CCCEEEeecCCChhHHHHHHHhhcC-CcCCCeeecccCCCCC---CCCCC---cccccCCCcce--EEEEeecC
Q 015587 336 EALG-QRKMILAPWCDEEEVEKDVKARTKG-EMGAAKTLCSPLEQPE---VPEGT---LCFASGKPAKK--WTYWGRSY 404 (404)
Q Consensus 336 ~~~~-~~~~~~~pwc~~~~~e~~ik~~~~~-~~~~~~~~c~p~~~~~---~~~~~---~C~~~~~~a~~--~~~~~rsY 404 (404)
..+. +++++.+||||+.+|+.+++++-.+ +..+|+++|||++... ..+|. +|..||..+.. +++|+|+|
T Consensus 421 ~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~~~~g~~e~k~r~~ge~~~~~~~~l~~~~~ 499 (500)
T COG0442 421 QAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKRLAEGEVEVKCRKCGEKEAVTIEALFARLY 499 (500)
T ss_pred HHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeecccccCCceeEEecCCCchhhccHHHHHHHhh
Confidence 5554 4569999999999999999933321 1239999999998652 22343 79999977776 89999987
|
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=477.68 Aligned_cols=289 Identities=21% Similarity=0.363 Sum_probs=262.3
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++| +++|||+.|.++||+++|.++ ++++||||
T Consensus 35 ~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~~~----~~~~L~Pt 109 (439)
T PRK12325 35 QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLW-RESGRYDAYGKEMLRIKDRHD----REMLYGPT 109 (439)
T ss_pred cCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHH-hhcCCccccchhheEEecCCC----CEEEEcCC
Confidence 4899999999999999999999999999999999999999999999 568999999999999999877 89999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
+|+.++.++++++.||++||+|+|||++|||||.+|+.||+|+|||+|+|+|+|+++.+++..++..++++|.++|+.||
T Consensus 110 ~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lg 189 (439)
T PRK12325 110 NEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLG 189 (439)
T ss_pred CcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999987
Q ss_pred C--cceEe-----e-CC-------------C---------------------------------C---------------
Q 015587 166 A--VPVIK-----G-KK-------------S---------------------------------E--------------- 176 (404)
Q Consensus 166 ~--ipv~~-----g-~~-------------~---------------------------------~--------------- 176 (404)
. +++.. | .. + .
T Consensus 190 l~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 269 (439)
T PRK12325 190 LKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADLQPIVDEWTSLYAATEEMHDEAAFAA 269 (439)
T ss_pred CceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHHHHHHhhhcccccchhhhhccCCCCc
Confidence 3 22221 1 00 0 0
Q ss_pred --c-----C-------cc--------cH------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEE
Q 015587 177 --L-----E-------NS--------KF------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVI 210 (404)
Q Consensus 177 --~-----e-------kf--------~F------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~ 210 (404)
. . .| .| |+|++|+++|+|+.|++||+++||+||+
T Consensus 270 ~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~~g~~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~ 349 (439)
T PRK12325 270 VPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVG 349 (439)
T ss_pred CCCcceeecceEEEEeeecCcccccHhcCCEEECCCCCEEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEE
Confidence 0 0 01 01 9999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCce
Q 015587 211 VIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAK 290 (404)
Q Consensus 211 Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k 290 (404)
|+|+..++ ++..++|.+|++.|+++|++|++|+++ .++|+||++|+++|+|++|+||++|+++|+|+|++|+++++
T Consensus 350 Iipi~~~~---~~~~~~a~~i~~~L~~~Gi~v~~D~~~-~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~~~ 425 (439)
T PRK12325 350 IINLKQGD---EACDAACEKLYAALSAAGIDVLYDDTD-ERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGER 425 (439)
T ss_pred EEecCCCC---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCCce
Confidence 99995332 568899999999999999999999997 59999999999999999999999999999999999999999
Q ss_pred eeechhhHHHHHH
Q 015587 291 IDLPRGSLVERVK 303 (404)
Q Consensus 291 ~~v~~~el~~~i~ 303 (404)
..++++++++.+.
T Consensus 426 ~~v~~~el~~~i~ 438 (439)
T PRK12325 426 EELSVEAAINRLT 438 (439)
T ss_pred EEEEHHHHHHHHh
Confidence 9999999887653
|
|
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-58 Score=483.46 Aligned_cols=289 Identities=24% Similarity=0.387 Sum_probs=263.5
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
+.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++| +++|||++|.+|||+|+|+++ ++++|||
T Consensus 34 ~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~~~----~~l~LrP 108 (565)
T PRK09194 34 KLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELW-QESGRWEEYGPELLRLKDRHG----RDFVLGP 108 (565)
T ss_pred ccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHH-hhcCCccccchhceEEecCCC----CEEEECC
Confidence 35699999999999999999999999999999999999999999999 568999999999999999887 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
|+|+.++.++++++.||++||+|+|||+++||||.+|++||+|+|||+|.|+|+||.+.++|++++..++++|.++|+.|
T Consensus 109 t~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 109 THEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred CChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCcceEee-------------------------------------------C---C-CC-------------c-------
Q 015587 165 LAVPVIKG-------------------------------------------K---K-SE-------------L------- 177 (404)
Q Consensus 165 ~~ipv~~g-------------------------------------------~---~-~~-------------~------- 177 (404)
| +|+.+. . . +. .
T Consensus 189 g-l~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~~p~~~t~~e~a~~ 267 (565)
T PRK09194 189 G-LDFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVDTPNAKTIEELAEF 267 (565)
T ss_pred C-CccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeecCCCCCcHHHHHHH
Confidence 7 454211 0 0 00 0
Q ss_pred ------------------------------------------Cc------------------------------------
Q 015587 178 ------------------------------------------EN------------------------------------ 179 (404)
Q Consensus 178 ------------------------------------------ek------------------------------------ 179 (404)
.+
T Consensus 268 lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~g~~~G~v~P~Gl~~~v~viiD~s 347 (565)
T PRK09194 268 LNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAALGAVPGFLGPVGLPKDVPIIADRS 347 (565)
T ss_pred hCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhhCCCCCccCcccCCCCceEEEecc
Confidence 00
Q ss_pred --------------------------c----------------------------------------cH-----------
Q 015587 180 --------------------------S----------------------------------------KF----------- 182 (404)
Q Consensus 180 --------------------------f----------------------------------------~F----------- 182 (404)
| +|
T Consensus 348 l~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~~ys~~~~~~~~~~ 427 (565)
T PRK09194 348 VADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTKYSEAMNATVLDE 427 (565)
T ss_pred ccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCcchhhccCCEEECC
Confidence 0 00
Q ss_pred -----------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEe
Q 015587 183 -----------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSD 245 (404)
Q Consensus 183 -----------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D 245 (404)
|+|++|+|+|+|++|++||+++||+||+|+|+..++ ++..++|.+|++.|+++|++|.+|
T Consensus 428 ~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~---~~~~~~a~~i~~~L~~~gi~v~~D 504 (565)
T PRK09194 428 NGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKD---EEVKELAEKLYAELQAAGIEVLLD 504 (565)
T ss_pred CCCEEeEEEeeEechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCc---HHHHHHHHHHHHHHhccCCeEEEE
Confidence 999999999999999999999999999999997432 468899999999999999999999
Q ss_pred CCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015587 246 FRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 246 ~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~ 303 (404)
+++ .++|+||++|+++|+|++|+||++|+++|+|+|++|++|+|..|+++++.+.|.
T Consensus 505 dr~-~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 505 DRK-ERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred CCC-CCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 997 699999999999999999999999999999999999999999999999887774
|
|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-57 Score=474.18 Aligned_cols=290 Identities=21% Similarity=0.361 Sum_probs=263.5
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+++|++|++++++.+.++||++|.||+|+|.++| +++|||+.|.+|||+|+|+++ ++++|||
T Consensus 34 ~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~-~~sg~~~~~~~emf~~~dr~~----~~l~LrP 108 (568)
T TIGR00409 34 RLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELW-QESGRWDTYGPELLRLKDRKG----REFVLGP 108 (568)
T ss_pred ccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHH-hhcCCCCccchhcEEEecCCC----CEEEEcC
Confidence 45799999999999999999999999999999999999999999999 568999999999999999887 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
|+|+.++.++++++.||++||+|+|||+++||+|.+|+.||+|+|||+|.|+|+||.+.+++++|+..++++|.++|++|
T Consensus 109 T~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 109 THEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred CCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEee-------------------------------------------C---CC-----------------------
Q 015587 165 LAVPVIKG-------------------------------------------K---KS----------------------- 175 (404)
Q Consensus 165 ~~ipv~~g-------------------------------------------~---~~----------------------- 175 (404)
| +|+.+. . ..
T Consensus 189 g-L~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~~~~~~~~tp~~~ti~~~~~ 267 (568)
T TIGR00409 189 G-LDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPTAELDKVDTPNTKTIAELVE 267 (568)
T ss_pred C-CcceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCccccccccccceeecCCCCCcHHHHHH
Confidence 7 343110 0 00
Q ss_pred ------------------C--------------------------c-C--------------------------------
Q 015587 176 ------------------E--------------------------L-E-------------------------------- 178 (404)
Q Consensus 176 ------------------~--------------------------~-e-------------------------------- 178 (404)
. . .
T Consensus 268 ~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~~~~~~g~~~g~~gpv~~~~~~~i 347 (568)
T TIGR00409 268 CFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEEIFQKIASGPGSLGPVNINGGIPV 347 (568)
T ss_pred HhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHHHHHhhCCCCCccCccccccCceE
Confidence 0 0 0
Q ss_pred ----------cc------------------c------------------------------------H------------
Q 015587 179 ----------NS------------------K------------------------------------F------------ 182 (404)
Q Consensus 179 ----------kf------------------~------------------------------------F------------ 182 (404)
.| + |
T Consensus 348 ~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rgIEvGhiF~LG~kYS~~~~~ 427 (568)
T TIGR00409 348 LIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARGIEVGHIFQLGTKYSEALKA 427 (568)
T ss_pred EechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccceEEEEEeccchhhhHHhcCC
Confidence 00 0 0
Q ss_pred ----------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCC
Q 015587 183 ----------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGI 240 (404)
Q Consensus 183 ----------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Gi 240 (404)
|+|++++|+|+|++|++||+++||+||+|+|+..++ ++..++|.+|++.|+++|+
T Consensus 428 ~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~---~~~~~~a~~l~~~L~~~gi 504 (568)
T TIGR00409 428 TFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKD---EEQQQLAEELYSELLAQGV 504 (568)
T ss_pred EEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCCh---HHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999997542 4688999999999999999
Q ss_pred EEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHH
Q 015587 241 RANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304 (404)
Q Consensus 241 rv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~ 304 (404)
+|.+|+|+ .++|+||++|+++|+|++|+||++++++|+|+|++|+++++..|+++++++.|.+
T Consensus 505 ~v~~DDr~-~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 505 DVLLDDRN-ERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVECLEE 567 (568)
T ss_pred EEEEECCC-CCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHHHHHHhh
Confidence 99999998 5999999999999999999999999999999999999999999999999887753
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=411.39 Aligned_cols=202 Identities=50% Similarity=0.952 Sum_probs=188.9
Q ss_pred CCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccC
Q 015587 197 GLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA 276 (404)
Q Consensus 197 Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~ 276 (404)
||+|||++||+||+|+|++.++.+.+++.+++.+|++.|+++|+||++|++++.++|+||++|+++|+|++|+||++|++
T Consensus 1 GLvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele 80 (202)
T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLE 80 (202)
T ss_pred CCcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhh
Confidence 89999999999999999975432335588999999999999999999999984599999999999999999999999999
Q ss_pred CCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCCCEEEeecCCChhHHH
Q 015587 277 NDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEK 356 (404)
Q Consensus 277 ~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~pwc~~~~~e~ 356 (404)
+|+|+|++|+++++..++++++++.+.++|++||++||++|++++++ |+.++|||||+++|++||||++||||+.+||+
T Consensus 81 ~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~i~~~l~~~A~~~~~~-~~~~~~~~e~~~~~~~~~~v~~~wcg~~~~e~ 159 (202)
T cd00862 81 KNTVVIVRRDTGEKKTVPLAELVEKVPELLDEIQEDLYERALEFRDA-TRIVDTWEEFKEALNEKGIVLAPWCGEEECEE 159 (202)
T ss_pred CCEEEEEEecCCcceEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-eEeeCCHHHHHHHHhcCCEEEEEecCCHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999989999999999999999
Q ss_pred HHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 357 DVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 357 ~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
+||++| +||+||||++++....+.+|++||+||+.|++|||||
T Consensus 160 ~ik~~~-----~a~~~~ip~~~~~~~~~~~C~~~g~~a~~~~~~arsY 202 (202)
T cd00862 160 EIKEET-----AATILCIPFDEAKLEEGGKCVVCGRPAKAYARFAKSY 202 (202)
T ss_pred HHHHhh-----CCeEeeeecCCcCCCCCCccCCcCCchheEEEEEEeC
Confidence 999999 9999999998762223457999999999999999999
|
ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs. |
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=442.64 Aligned_cols=286 Identities=18% Similarity=0.294 Sum_probs=254.2
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+.+|+.|++++++.+.++||++|.||++...++|. .|||++.|.++||++ +.++ ++++|||
T Consensus 155 ~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k-~SGh~~~y~~~mf~~-~~~~----e~~~LrP 228 (545)
T PRK14799 155 EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWK-ISGHYTLYRDKLIVF-NMEG----DEYGVKP 228 (545)
T ss_pred ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHh-hccccccchhhccee-eccC----ceEEecc
Confidence 458999999999999999999999999999999999999999999995 599999999999999 5566 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCC-CCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|++++.+|+++.+|||+||+|+||||+|||||.++. .||+|+|||+|+|+|+ +++++++.+|+..++++..++|+.
T Consensus 229 m~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~vy~~ 307 (545)
T PRK14799 229 MNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVEVWHK 307 (545)
T ss_pred CCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998763 5999999999999999 788899999999999999999999
Q ss_pred hCC----cceEeeCCC--------CcCcc------------------------------------------------c--
Q 015587 164 FLA----VPVIKGKKS--------ELENS------------------------------------------------K-- 181 (404)
Q Consensus 164 l~~----ipv~~g~~~--------~~ekf------------------------------------------------~-- 181 (404)
+|. +++.++.++ .|+++ +
T Consensus 308 fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g~gafygpkiD~~v~dalgr~~q~~Tiqldf~ 387 (545)
T PRK14799 308 FGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFN 387 (545)
T ss_pred hCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecceeccccCccceEehhhcCchhhhhhhhhhcC
Confidence 985 333333221 11111 0
Q ss_pred ----H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHH
Q 015587 182 ----F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTAT 231 (404)
Q Consensus 182 ----F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i 231 (404)
| |++++|++++ .| .||+|++|.||+|+|++ ++..++|.+|
T Consensus 388 lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL~e~~---~G-~~P~wlaP~qV~Iipi~------e~~~~~A~~I 457 (545)
T PRK14799 388 LPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHF---KG-KLPTWLSSVQVRVLPIT------DEVNEYAEKV 457 (545)
T ss_pred cccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHHHHHc---CC-CCCCCCCCceEEEEEcC------HHHHHHHHHH
Confidence 1 9999888764 23 69999999999999996 4678999999
Q ss_pred HHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 232 VEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 232 ~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.+.+.+
T Consensus 458 a~~LR~~GirVelD~~~-~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~eq~~v~l~eli~~l~~~i~~ 533 (545)
T PRK14799 458 LNDMRKRRIRAEIDYAG-ETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARGNIEVRNVKFEKFLELLITEIAQ 533 (545)
T ss_pred HHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCceEEEcHHHHHHHHHHHHhh
Confidence 99999999999999987 69999999999999999999999999999999999999999999999998877766654
|
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=447.73 Aligned_cols=293 Identities=20% Similarity=0.247 Sum_probs=262.9
Q ss_pred CCccCC--CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCC
Q 015587 1 MIEYYD--ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 78 (404)
Q Consensus 1 ~~~~~~--~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~ 78 (404)
|+++.+ .+|++.|+|.|+.+++.|++++++.+.++||++|.||.+...++| +.+||+++|.++||++++. + +
T Consensus 208 L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~-~~sgh~~~f~e~my~v~~~-~----e 281 (613)
T PRK03991 208 LADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHP-AIREHADKFGERQYRVKSD-K----K 281 (613)
T ss_pred CcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHH-hhcccccccchhceEecCC-C----c
Confidence 456655 689999999999999999999999999999999999999999999 5799999999999999643 3 7
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeec-eeecCCCCC-CCccccceeEEeceeeecCChhhHHHHHHHHHHH
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCN-VVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILEL 156 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~-vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~ 156 (404)
+++||||+|++++.+|++|+.||++||+|++|+++ +||+|.++. +||+|+|||+|.|+|+|+.+.++|.+|+..++++
T Consensus 282 ~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~ 361 (613)
T PRK03991 282 DLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEM 361 (613)
T ss_pred eEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 999999875 6999999999999999877789999999999999
Q ss_pred HHHHHHHhCCcceEeeCCC----------------------------CcCc-c---------------------------
Q 015587 157 YRRIYEEFLAVPVIKGKKS----------------------------ELEN-S--------------------------- 180 (404)
Q Consensus 157 y~~~~~~l~~ipv~~g~~~----------------------------~~ek-f--------------------------- 180 (404)
+.++|+.|| +|+..-..+ +.+. |
T Consensus 362 ~~~i~~~lG-l~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~ 440 (613)
T PRK03991 362 ILETGEDLG-RDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVE 440 (613)
T ss_pred HHHHHHHcC-CCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcc
Confidence 999999887 453211000 0000 0
Q ss_pred ---cH--------------------------HHHHHHHHHcCCC----CCCCCCCCCCCceEEEEEecCCCCChhhHHHH
Q 015587 181 ---KF--------------------------VQIGVMVMVHGDD----KGLMLPPKVASVQVIVIPVPYKDADTQGIFDA 227 (404)
Q Consensus 181 ---~F--------------------------Rli~~Lie~~~d~----~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~ 227 (404)
.| |+|++|+|+|+|+ +|++||+|+||+||+|+|++ ++..++
T Consensus 441 ~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~------e~~~~~ 514 (613)
T PRK03991 441 NAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVS------ERHLDY 514 (613)
T ss_pred cchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeC------HHHHHH
Confidence 01 9999999999998 89999999999999999996 467899
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 228 CTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 228 a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
|.+|++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.++++
T Consensus 515 A~eIa~~Lr~~GirV~lDdr~-~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~ 593 (613)
T PRK03991 515 AEEVADKLEAAGIRVDVDDRD-ESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETK 593 (613)
T ss_pred HHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 999999999999999999997 5999999999999999999999999999999999999999999999999888887765
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=444.49 Aligned_cols=285 Identities=22% Similarity=0.360 Sum_probs=254.9
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+.+|+.|++++++.+.++||++|.||+|++.++|.+ +||++.|.++|| +.|.++ +.++|||
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sG~~~~~~~emy-~~d~~~----~~~~LrP 334 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWER-SGHWDHYKDNMY-FSEVDN----KSFALKP 334 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCChhhhhhhcC-eecCCC----cEEEEcc
Confidence 3589999999999999999999999999999999999999999999976 699999999999 777777 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|++++++|++++.||++||+|+||||+|||||.++ ++||+|+|||+|.|+|+ +++++++++|+..+++++.++|+.
T Consensus 335 ~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~~~~~~~~~i~~~ 413 (639)
T PRK12444 335 MNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHL-FVTPDQIEDEIKSVMAQIDYVYKT 413 (639)
T ss_pred CCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEE-ECCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765 55999999999999997 588788999999999999999999
Q ss_pred hCCcceEe--eCCC--------CcCc-----------------------------c-------------------c----
Q 015587 164 FLAVPVIK--GKKS--------ELEN-----------------------------S-------------------K---- 181 (404)
Q Consensus 164 l~~ipv~~--g~~~--------~~ek-----------------------------f-------------------~---- 181 (404)
|| +|+.+ +.++ .|++ | +
T Consensus 414 lg-l~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~t~~~d~~~~ 492 (639)
T PRK12444 414 FG-FEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCGTIQLDFQMP 492 (639)
T ss_pred cC-CcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhcccceeeecccc
Confidence 97 47654 2221 0000 0 0
Q ss_pred --H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 182 --F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 182 --F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
| |+|++|++.+ |+.||+|++|.||+|+|++. ++..++|.+|++
T Consensus 493 ~~f~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~----~~~~p~~~ap~qV~Ii~~~~-----~~~~~~a~~la~ 563 (639)
T PRK12444 493 EKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHF----GGAFPAWLAPVQVKVIPVSN-----AVHVQYADEVAD 563 (639)
T ss_pred cccceEEECCCCCccccEEEEECCCCCHHHHHHHHHHhc----CCCCCCccCCceEEEEEccc-----HHHHHHHHHHHH
Confidence 1 9999999975 67999999999999999872 147789999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|++++|..++++++.+.+.+.++
T Consensus 564 ~LR~~Gi~veid~~~-~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~ 636 (639)
T PRK12444 564 KLAQAGIRVERDERD-EKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIK 636 (639)
T ss_pred HHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhh
Confidence 999999999999987 6999999999999999999999999999999999999999999999999888766654
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=435.33 Aligned_cols=286 Identities=20% Similarity=0.287 Sum_probs=254.4
Q ss_pred CCccCC--CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCC
Q 015587 1 MIEYYD--ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 78 (404)
Q Consensus 1 ~~~~~~--~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~ 78 (404)
|+++.+ ++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|.+ +||++.|.+|||+|+|++| +
T Consensus 181 l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~emy~~~d~~~----~ 255 (563)
T TIGR00418 181 LFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEI-SGHWDNYKERMFPFTELDN----R 255 (563)
T ss_pred CcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCcccchhhcceeccCCC----c
Confidence 345654 89999999999999999999999999999999999999999999966 7999999999999999887 8
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
.++||||+|++++++|+++..||++||+|+||+|+|||||.++ .+||+|+|||+|.|+|+++. .+++++|+..+++++
T Consensus 256 ~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i~~~ 334 (563)
T TIGR00418 256 EFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQFRLI 334 (563)
T ss_pred eEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 46999999999999999877 899999999999999
Q ss_pred HHHHHHhCCcc---eEeeCC-CC--------cC-----------------------------------------------
Q 015587 158 RRIYEEFLAVP---VIKGKK-SE--------LE----------------------------------------------- 178 (404)
Q Consensus 158 ~~~~~~l~~ip---v~~g~~-~~--------~e----------------------------------------------- 178 (404)
.++|+.|| +| +.++.+ ++ +.
T Consensus 335 ~~~~~~lg-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~~~~lg~~~~~~t 413 (563)
T TIGR00418 335 QKVYSDFG-FSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAFKDALGREWQCAT 413 (563)
T ss_pred HHHHHHcC-CCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEeecCCCCceeece
Confidence 99999987 44 222211 00 00
Q ss_pred ---------cc-------------------cH-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHH
Q 015587 179 ---------NS-------------------KF-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIF 225 (404)
Q Consensus 179 ---------kf-------------------~F-----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~ 225 (404)
+| .| |++++|++.+ |..||++++|.||+|+|++. +..
T Consensus 414 ~q~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~----~~~~p~~~~p~~v~vi~~~~------~~~ 483 (563)
T TIGR00418 414 VQLDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKY----AGNFPLWLAPVQVVVIPVNE------RHL 483 (563)
T ss_pred eeeccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhc----cCCCCCcCCCceEEEEEccc------hHH
Confidence 00 01 9999998876 45789889999999999973 567
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHH
Q 015587 226 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304 (404)
Q Consensus 226 ~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~ 304 (404)
++|.+|++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|++|++..++++++++.+++
T Consensus 484 ~~a~~ia~~LR~~Gi~v~~d~~~-~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~~~i~~ 561 (563)
T TIGR00418 484 DYAKKVAQKLKKAGIRVDVDDRN-ERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRK 561 (563)
T ss_pred HHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHHHHHHh
Confidence 89999999999999999999987 6999999999999999999999999999999999999999999999998776643
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=432.82 Aligned_cols=284 Identities=20% Similarity=0.307 Sum_probs=253.2
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
..+|++.|+|.|.++++.|++++++...+.||++|.||.|.+.++| +.||||+.|.++||.+.+..+ +.++||||
T Consensus 235 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~-~~sGh~~~~~~~mf~~~~~~~----~~y~l~p~ 309 (614)
T PLN02837 235 AGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLW-KTSGHLDFYKENMYDQMDIED----ELYQLRPM 309 (614)
T ss_pred cCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHH-hhcCCcccchhhcccccCCCC----ceEEECCC
Confidence 3679999999999999999999999999999999999999999999 569999999999999977655 78999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+|+.++.+|+++++||++||+|++||++|||||.++ .+||+|+|||+|+|+|+ |++++++++|+..++++|.++|+.|
T Consensus 310 ~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~~~~l 388 (614)
T PLN02837 310 NCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEILKQF 388 (614)
T ss_pred CcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999875 66999999999999998 8999999999999999999999998
Q ss_pred CCcc-eEe--eCCC--------CcCcc--------------------------------------------------c--
Q 015587 165 LAVP-VIK--GKKS--------ELENS--------------------------------------------------K-- 181 (404)
Q Consensus 165 ~~ip-v~~--g~~~--------~~ekf--------------------------------------------------~-- 181 (404)
| +| +.+ +.++ .|+++ +
T Consensus 389 g-~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~ 467 (614)
T PLN02837 389 G-FSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLP 467 (614)
T ss_pred C-CCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCceeeecceeEeecch
Confidence 7 55 322 2221 11100 0
Q ss_pred --H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 182 --F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 182 --F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
| |+|++|+++|++ .||+|+||.||+|+|++ ++..++|.+|++
T Consensus 468 ~~f~l~y~~~d~~~~~pv~ih~~~~G~~eRlia~Lie~~~g----~~P~~laP~qV~IIpi~------~~~~~~A~~Ia~ 537 (614)
T PLN02837 468 ERFDITYVDSNSEKKRPIMIHRAILGSLERFFGVLIEHYAG----DFPLWLAPVQARVLPVT------DNELEYCKEVVA 537 (614)
T ss_pred hhcCcEEECCCCCccCCEEEEcCCccCHHHHHHHHHHHcCC----CCCCCCCCccEEEEEeC------hHHHHHHHHHHH
Confidence 1 999999999864 39999999999999996 356799999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
.||++|++|++| ++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.+..++
T Consensus 538 ~Lr~~GirVev~-~~-~slgkkir~A~~~gip~~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~~ 610 (614)
T PLN02837 538 KLKAKGIRAEVC-HG-ERLPKLIRNAETQKIPLMAVVGPKEVETRTLTVRSRHGGELGTMPVDDFINRIQLAVEN 610 (614)
T ss_pred HHHHCCCEEEEe-CC-CCHHHHHHHHHHcCCCEEEEEcchhhhcCEEEEEECCCCceeEeeHHHHHHHHHHHHhh
Confidence 999999999995 45 58999999999999999999999999999999999999999999999988777666543
|
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=428.08 Aligned_cols=285 Identities=22% Similarity=0.315 Sum_probs=253.8
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+.+|+.|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||+|+|.+| +.++||||
T Consensus 194 ~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~~----~~~~LRP~ 268 (575)
T PRK12305 194 IGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEIDE----EEYYLKPM 268 (575)
T ss_pred cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccCC----ceEEEecC
Confidence 489999999999999999999999999999999999999999999976 8999999999999999887 89999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+|++++++++++..||++||+|++|+|+|||+|.++ .+|+.|+|||+|.|+|+++ +++++.+|+..+++++.++|+.|
T Consensus 269 ~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~-~~~~~~~e~~e~i~l~~~~~~~l 347 (575)
T PRK12305 269 NCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFC-TPDQIEDEILKVLDFVLELLKDF 347 (575)
T ss_pred CCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEe-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999753 3699999999999999855 67777777788888889999999
Q ss_pred CCcc---eEeeCCC---------CcCc-----------------------------c-------------------c---
Q 015587 165 LAVP---VIKGKKS---------ELEN-----------------------------S-------------------K--- 181 (404)
Q Consensus 165 ~~ip---v~~g~~~---------~~ek-----------------------------f-------------------~--- 181 (404)
|. + +.++.++ .|++ | +
T Consensus 348 gl-~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~ 426 (575)
T PRK12305 348 GF-KDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQLDFNL 426 (575)
T ss_pred CC-CeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeeccCCCceeccceeeeccc
Confidence 74 4 3334321 0100 0 0
Q ss_pred ---H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHH
Q 015587 182 ---F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATV 232 (404)
Q Consensus 182 ---F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~ 232 (404)
| |++++|++.+ +..||+|++|.||+|+|++ ++..++|.+|+
T Consensus 427 ~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~~----~~~~p~~~~p~~v~Ii~~~------~~~~~~a~~i~ 496 (575)
T PRK12305 427 PERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHY----AGAFPFWLAPVQVVIIPVA------DAHNEYAEEVA 496 (575)
T ss_pred HhhCCCEEECCCCCccCceEEEccccccHHHHHHHHHHHh----CCCCCCCCCCccEEEEEeC------hHHHHHHHHHH
Confidence 1 9999999976 3589999999999999997 35789999999
Q ss_pred HHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 233 EKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 233 ~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
+.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.|++++++
T Consensus 497 ~~Lr~~gi~v~~d~~~-~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~~ 571 (575)
T PRK12305 497 KKLRAAGIRVEVDTSN-ERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEKIAE 571 (575)
T ss_pred HHHHHCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEechhhhCCEEEEEEcCCCceeeeeHHHHHHHHHHHHhc
Confidence 9999999999999987 59999999999999999999999999999999999999999999999999888877764
|
|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-50 Score=428.81 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=257.4
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+++++.|++++++.+.++||++|.||.|.+.++|. .|||++.|.++||+| +.++ ++++|||
T Consensus 308 ~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~-~sGh~~~~~~~mf~~-~~~~----~~~~Lrp 381 (686)
T PLN02908 308 ELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWE-TSGHAAHYKENMFVF-EIEK----QEFGLKP 381 (686)
T ss_pred CCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHh-hcCCccccchhccEE-ecCC----eeEEEcC
Confidence 346899999999999999999999999999999999999999999996 599999999999999 4455 8899999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|++++.+|+++.+||++||+|++++|+|||+|.++ ..||+|+|||+|.|+|+ +++++++.+|+..+++.+.++|+.
T Consensus 382 ~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~v~~~ 460 (686)
T PLN02908 382 MNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDYVYEV 460 (686)
T ss_pred CCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876 35999999999999999 788899999999999999999999
Q ss_pred hCCcceEeeCCCCcCcc----------------------------------------------------------cH---
Q 015587 164 FLAVPVIKGKKSELENS----------------------------------------------------------KF--- 182 (404)
Q Consensus 164 l~~ipv~~g~~~~~ekf----------------------------------------------------------~F--- 182 (404)
|| +++.+..++.+++| +|
T Consensus 461 lG-~~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp 539 (686)
T PLN02908 461 FG-FTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLP 539 (686)
T ss_pred CC-CcEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeeccceeecccCH
Confidence 87 57655444333322 11
Q ss_pred ------------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHH
Q 015587 183 ------------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATV 232 (404)
Q Consensus 183 ------------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~ 232 (404)
|++++|++.+ |+.||+|++|.||+|+|++ ++..++|.+|+
T Consensus 540 ~~f~L~Y~~e~~~~~~~pv~ihrai~GsiERli~iL~e~~----~g~~p~wlsp~qv~Vipv~------~~~~~~A~~va 609 (686)
T PLN02908 540 IRFKLSYSAEDEAKIERPVMIHRAILGSVERMFAILLEHY----AGKWPFWLSPRQAIVVPIS------EKSQDYAEEVR 609 (686)
T ss_pred hhcCCEEECCCCCcCCCCEEEEeCceEhHHHHHHHHHHHc----CCCCCCCCCCceEEEEEEC------HHHHHHHHHHH
Confidence 9999998864 5689999999999999997 35778999999
Q ss_pred HHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 233 EKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 233 ~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
+.||++|++|++|.++ .++++|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.++++.++
T Consensus 610 ~~LR~~Gi~vevd~~~-~~l~kkir~A~~~g~~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~~ 684 (686)
T PLN02908 610 AQLHAAGFYVDVDVTD-RKIQKKVREAQLAQYNYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERAE 684 (686)
T ss_pred HHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHhh
Confidence 9999999999999987 69999999999999999999999999999999999999999999999998888776653
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-49 Score=420.53 Aligned_cols=287 Identities=22% Similarity=0.359 Sum_probs=251.0
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|.+ +||++.+.++||.|.|++| +.++|||
T Consensus 257 ~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~-~g~~~~~~~~my~~~d~~~----~~~~LRP 331 (638)
T PRK00413 257 EEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWET-SGHWDHYRENMFPTTESDG----EEYALKP 331 (638)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHh-cCChhhhhhccceeecCCC----cEEEEec
Confidence 4569999999999999999999999999999999999999999999976 7999999999999999887 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCC-CCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
++|++++++++++.+||++||+|+||+|+|||||.++. .|+.|+|||+|.|+|+++ +.+++.+|+.+++.++.++|+.
T Consensus 332 ~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g-~~~~~~~e~~eii~l~~~~~~~ 410 (638)
T PRK00413 332 MNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFC-TPEQIEEEVKKVIDLILDVYKD 410 (638)
T ss_pred CCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996522 599999999999999965 5556666667777777899999
Q ss_pred hCCcce--EeeCC--------CCcC-----------------------------cc-------------------cH---
Q 015587 164 FLAVPV--IKGKK--------SELE-----------------------------NS-------------------KF--- 182 (404)
Q Consensus 164 l~~ipv--~~g~~--------~~~e-----------------------------kf-------------------~F--- 182 (404)
||.-++ .++.+ ..++ ++ +|
T Consensus 411 lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 490 (638)
T PRK00413 411 FGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQCGTIQLDFNLP 490 (638)
T ss_pred cCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCeEEeccEeecccCh
Confidence 985233 22321 0000 00 01
Q ss_pred -----------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 183 -----------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 183 -----------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
|+|++|++.++ ..||+|++|.||+|+|++ ++..++|.+|++
T Consensus 491 ~~~dl~Yt~~~~~~~~p~~i~~~~~g~~eRli~~l~e~~~----~~~p~~~~p~~v~Ii~~~------~~~~~~a~~i~~ 560 (638)
T PRK00413 491 ERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHYA----GAFPTWLAPVQVVVLPIT------DKHADYAKEVAK 560 (638)
T ss_pred hhcCCEEECCCCCccCcEEEEecceehHHHHHHHHHHHcC----CCCCcccCcceEEEEEeC------hhHHHHHHHHHH
Confidence 99999998763 379999999999999997 357789999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|++++|..++++++++.+.+++++
T Consensus 561 ~Lr~~gi~v~~d~~~-~~l~kki~~A~~~g~~~~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~~ 634 (638)
T PRK00413 561 KLKAAGIRVEVDLRN-EKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIAS 634 (638)
T ss_pred HHHhCCCEEEEECCC-CCHhHHHHHhhccCCCEEEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHhh
Confidence 999999999999997 69999999999999999999999999999999999999999999999999988887765
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-49 Score=401.21 Aligned_cols=293 Identities=18% Similarity=0.249 Sum_probs=248.2
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHh--cCceEeccCcccChhhHhhhcccccCcccceEEEEecC---------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKK--MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~--~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g--------- 72 (404)
|+.++|+|||+|.|..|+++|++++++.+.. .||++|.||++.+.++| +.||||+.|.+.||.+...+
T Consensus 24 y~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~-~~SGH~~~f~d~m~~~~~~~~~~r~d~~~ 102 (456)
T PRK04173 24 YGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVW-EASGHVDNFSDPLVECKKCKKRYRADHLI 102 (456)
T ss_pred ccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHH-hhcCCccccCCceeEeCCCCCEeechhhh
Confidence 6779999999999999999999999999987 89999999999999999 56999999999999885211
Q ss_pred ------------------------------CC--------------------CCCCceeccCCChhHHHHHHHhhhccCC
Q 015587 73 ------------------------------ES--------------------DLEVPIAIRPTSETVMYPYFSKWIRGHR 102 (404)
Q Consensus 73 ------------------------------~~--------------------~l~~~l~LRPt~e~~i~~~~~~~i~s~~ 102 (404)
+. +-+..++|||+++.+++..|++|++|||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr 182 (456)
T PRK04173 103 EELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTAR 182 (456)
T ss_pred HHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhcc
Confidence 11 1124678999999999999999999999
Q ss_pred -CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc--eEeeCCC----
Q 015587 103 -DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP--VIKGKKS---- 175 (404)
Q Consensus 103 -~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip--v~~g~~~---- 175 (404)
+||++++|||+|||||.+|..||+|+|||+|+|+|+ |++++++.+|+..+++.+.++|..+|.-+ +.+..+.
T Consensus 183 ~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hi-F~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~~~~~e~ 261 (456)
T PRK04173 183 KKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEF-FVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFREHLPEEL 261 (456)
T ss_pred ccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEE-EECcChHHHHHHHHHHHHHHHHHHcCCCccceEEEecCcchh
Confidence 999999999999999999877999999999999996 99999999999999999999999987422 2111100
Q ss_pred ------------------Cc--------------------Ccc-------------------c--H---HHHHHHHHHcC
Q 015587 176 ------------------EL--------------------ENS-------------------K--F---VQIGVMVMVHG 193 (404)
Q Consensus 176 ------------------~~--------------------ekf-------------------~--F---Rli~~Lie~~~ 193 (404)
.+ .+| . + |++.++++.|.
T Consensus 262 ~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~siGieRl~~ail~~~~ 341 (456)
T PRK04173 262 AHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSAGLDRLLLAFLEDAY 341 (456)
T ss_pred hccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecCCCCceeeeEEEEecccHHHHHHHHHHHHc
Confidence 00 011 0 1 97666655553
Q ss_pred CC---------CCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCC
Q 015587 194 DD---------KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 264 (404)
Q Consensus 194 d~---------~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~Gv 264 (404)
++ .|+.||+|+||+||+|+|++.+ ++..++|.+|++.||++ ++|++|++ .++|+|+++|++.|+
T Consensus 342 ~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~----~e~~~~A~~la~~LR~~-irVelD~~--~slgkkir~A~~~Gi 414 (456)
T PRK04173 342 TEEELGGGDKRTVLRLPPALAPVKVAVLPLVKK----EKLSEKAREIYAELRKD-FNVDYDDS--GSIGKRYRRQDEIGT 414 (456)
T ss_pred ccccccCCcceeEEECCCcCCCCEEEEEEecCc----HHHHHHHHHHHHHHHhc-CEEEEeCC--CCHHHHHHHHHHcCC
Confidence 33 3578999999999999999741 35778999999999999 99999964 489999999999999
Q ss_pred CEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015587 265 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 305 (404)
Q Consensus 265 P~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~ 305 (404)
|++|+||++|+++|+|+|++|+++++..++++++++.+.++
T Consensus 415 p~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 415 PFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred CEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 99999999999999999999999999999999988777543
|
|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-47 Score=379.34 Aligned_cols=282 Identities=20% Similarity=0.239 Sum_probs=242.1
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccc-cCcccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHI-EGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~-~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|..+.++|||.||+|..+.+|++|.+.+++.+++|||.+|.||+||.+++|.+++|.. +...+|||.|+|+|| +.
T Consensus 1 ~~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkgg----r~ 76 (429)
T COG0124 1 MMKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGG----RS 76 (429)
T ss_pred CCCccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCC----CE
Confidence 4567889999999999999999999999999999999999999999999999888854 457899999999998 99
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|+++++++..+.... .+|+|+|++|+||||| +||+| |+|||+|++++++|.+.+.+|+|++.++ .+
T Consensus 77 laLRpe~Tapv~R~~~en~~~~-~~p~k~yy~g~vfRyE-rPQ~G--R~RqF~Q~g~E~iG~~~~~~DAEvi~l~---~~ 149 (429)
T COG0124 77 LALRPELTAPVARAVAENKLDL-PKPLKLYYFGPVFRYE-RPQKG--RYRQFYQFGVEVIGSDSPDADAEVIALA---VE 149 (429)
T ss_pred EEecccCcHHHHHHHHhccccc-cCCeeEEEecceecCC-CCCCC--CceeeEEcCeEEeCCCCcccCHHHHHHH---HH
Confidence 9999999999999999876554 4899999999999999 78999 9999999999999999999999999998 48
Q ss_pred HHHHhCCcceE--eeCC------------C----------CcCc------------------------------------
Q 015587 160 IYEEFLAVPVI--KGKK------------S----------ELEN------------------------------------ 179 (404)
Q Consensus 160 ~~~~l~~ipv~--~g~~------------~----------~~ek------------------------------------ 179 (404)
+++.+|.-.+. ++.. + ..++
T Consensus 150 ~l~~lGi~~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~a 229 (429)
T COG0124 150 ILEALGIGGFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNA 229 (429)
T ss_pred HHHHcCCCcEEEEEcCcccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhcc
Confidence 88888743221 1000 0 0000
Q ss_pred --------------c----------------c----------------------------------------H-------
Q 015587 180 --------------S----------------K----------------------------------------F------- 182 (404)
Q Consensus 180 --------------f----------------~----------------------------------------F------- 182 (404)
| | |
T Consensus 230 p~i~~~~~~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pa 309 (429)
T COG0124 230 PELLDYLDEESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPA 309 (429)
T ss_pred HHhhhhccHHHHHHHHHHHHHHHHcCCCEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCc
Confidence 0 0 0
Q ss_pred --------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhH
Q 015587 183 --------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGW 254 (404)
Q Consensus 183 --------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~ 254 (404)
|++.+|.+. |...| ..++.+|+|++++. ....++.++++.||++|++|++|... +++++
T Consensus 310 vGFaiGveRl~~~l~~~-----~~~~~-~~~~~~v~v~~~~~------~~~~~a~~la~~LR~~g~~~~~~~~~-r~~k~ 376 (429)
T COG0124 310 VGFAIGVERLILALEEE-----GKEDP-VETRVDVYVVPLGE------DAEPEALKLAQKLRAAGISVEVDYSG-RKLKK 376 (429)
T ss_pred eeEehHHHHHHHHHHHc-----CCCCC-cCCCCCEEEEEcCc------hhHHHHHHHHHHHHHcCCcEEEEecc-ccHHH
Confidence 998887774 33222 24678999999984 33689999999999999999999987 68999
Q ss_pred HHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 255 KYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 255 k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
||++|++.|++++|+||++|+++|+|+||++.||+|..++++++++.+...+
T Consensus 377 q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 377 QFKYADKLGARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred HHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998887643
|
|
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=344.75 Aligned_cols=287 Identities=18% Similarity=0.298 Sum_probs=243.8
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
...+|+|-|+|.|.+..+++.+.++..+...|.+.|.+|++.+++||+ ++|+|+..++|+|.+.|+.| ..+||.|
T Consensus 39 ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWe-kTgRw~~~gsEl~rl~Dr~g----kq~cL~p 113 (457)
T KOG2324|consen 39 PSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWE-KTGRWDAMGSELFRLHDRKG----KQMCLTP 113 (457)
T ss_pred cCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHH-hcCcccccchhheEeeccCC----CEeccCC
Confidence 457899999999999999999999999999999999999999999996 59999999999999999998 8999999
Q ss_pred CChhHHHHHHHhhhc-cCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~-s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|..++.+++..+. ||++||+++||+|..||+|.||+.||+|.|||+|.|+++|..+++.|.+.+..+.++|.++|++
T Consensus 114 ThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkq 193 (457)
T KOG2324|consen 114 THEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQ 193 (457)
T ss_pred chHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 9999999999999999999999889999999999999999999999999999999999999999
Q ss_pred hCCcceEe---------eCCC------------------------CcCcc------------------------------
Q 015587 164 FLAVPVIK---------GKKS------------------------ELENS------------------------------ 180 (404)
Q Consensus 164 l~~ipv~~---------g~~~------------------------~~ekf------------------------------ 180 (404)
|+ +|++. |.-+ ..|.+
T Consensus 194 L~-~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~~~~IEVgHtF~L 272 (457)
T KOG2324|consen 194 LG-LPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLL 272 (457)
T ss_pred cC-CCeEEEeecccccCceeeeeEeccCccCccceeecCcCCccCchhhhcCCccccCCcccCCCcccccceEEEEEEEe
Confidence 86 77531 1000 00100
Q ss_pred -------------cH-----------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHH
Q 015587 181 -------------KF-----------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTA 230 (404)
Q Consensus 181 -------------~F-----------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~ 230 (404)
|+ |+|+|.++..+|++|++||..+||++|.+++... + .....+.+
T Consensus 273 G~kYS~~lna~f~~~~gKpe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~-~----~~~q~~~e 347 (457)
T KOG2324|consen 273 GTKYSKPLNAKFVNVEGKPEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKK-G----SKSQRAQE 347 (457)
T ss_pred ccccccccCceeeeecCCcceEEecceeccHHHHHHHHHHHhccccccccccccCcceeEEeccCC-c----chhhhHHH
Confidence 11 9999999999999999999999999996554332 1 22233444
Q ss_pred HHHHHhhC------CCEEEEeCCCCCChhHHHHHHHHcCCCEEEEEC-ccccCCCeEEEEECCCCceeeechhhHHHHH
Q 015587 231 TVEKLCEA------GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG-PKDLANDQVRAVRRDNGAKIDLPRGSLVERV 302 (404)
Q Consensus 231 i~~~Lr~~------Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG-~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i 302 (404)
++++|-.. --.+.+|||.+.++|+++++|++.|+|++|+|| ..-.++..+.|..+..|+...+..+.+.+.+
T Consensus 348 v~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~~~~l~ 426 (457)
T KOG2324|consen 348 VISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDGFMKLL 426 (457)
T ss_pred HHHHhhcchhhhhhccceeccchhhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchhhHHHHh
Confidence 55444321 125788999889999999999999999999999 7778888999999988987777666654433
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=368.28 Aligned_cols=285 Identities=25% Similarity=0.364 Sum_probs=254.4
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
...|++.|+|.|..+++.++++++.....+||++|.||++...++| +.||||+.|.+.||.+... + +.++|||+
T Consensus 208 ~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~-~~SGH~~~y~e~mf~~~~~-~----~~~~lKpm 281 (589)
T COG0441 208 EGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELW-ELSGHWDNYKEDMFLTESD-D----REYALKPM 281 (589)
T ss_pred cCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccc-hhccchhhccccceeeccC-C----hhheeeec
Confidence 4789999999999999999999999999999999999999999999 4699999999999988643 3 78999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCC-CccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~-gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+|++++.+|++..+|||+||+|+++.|.|||+|.++.. ||.|+|.|+|.|+|+ +|+.+++.+|+..+++....+++.+
T Consensus 282 NCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~~~f 360 (589)
T COG0441 282 NCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVYKDF 360 (589)
T ss_pred cCHhHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998776 999999999999999 7789999999999999999999889
Q ss_pred CCcceE--eeCCC-------CcCcc------------------------------------------------cH-----
Q 015587 165 LAVPVI--KGKKS-------ELENS------------------------------------------------KF----- 182 (404)
Q Consensus 165 ~~ipv~--~g~~~-------~~ekf------------------------------------------------~F----- 182 (404)
|...+. ++.++ .|++. +|
T Consensus 361 g~~~y~~~ls~r~k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeR 440 (589)
T COG0441 361 GFTDYEVKLSTRPKFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPER 440 (589)
T ss_pred CCceEEEEEecCCcccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhh
Confidence 853232 22221 11110 11
Q ss_pred ---------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHH
Q 015587 183 ---------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKL 235 (404)
Q Consensus 183 ---------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~L 235 (404)
|++++|++.+ .+.+|.|+||+||+|+|++. +..+||.++++.|
T Consensus 441 F~l~Yv~~d~~~~~PvmiHrai~GSiERfi~iLiE~~----~G~~P~WLaPvQv~VipV~~------~~~~ya~~v~~~L 510 (589)
T COG0441 441 FDLEYVDEDGEKKRPVIIHRAILGSIERFIGILLEHY----AGALPTWLAPVQVRVIPVAD------EHLDYAKEVAEKL 510 (589)
T ss_pred ceEEEEcCCCCccCCEEEEeccchhHHHHHHHHHHhc----cCCCcccCCccEEEEEEeCh------HHHHHHHHHHHHH
Confidence 9999999965 34999999999999999984 5679999999999
Q ss_pred hhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 236 CEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 236 r~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
+++|+||++|++++ ++|+|++.|...+||+.|+||.+|++++.|++++|.++++..++++++++.+++..+.
T Consensus 511 ~~~giRvdvD~~~e-~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~ 582 (589)
T COG0441 511 RKAGIRVDIDDRNE-KLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEG 582 (589)
T ss_pred HHcCCeeeeccccc-chHHHHHHHHhcCCCEEEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHhhc
Confidence 99999999999974 9999999999999999999999999999999999999988889999999888776654
|
|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=352.40 Aligned_cols=284 Identities=13% Similarity=0.135 Sum_probs=240.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcc-cccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKD-HIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g-~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+...+++|+.||+|..+..|+.|++.+++.|+++||++|.||+|++.++|.+.+| |++.+.++||.|.|.+| +.
T Consensus 1 ~~~~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g----~~ 76 (430)
T CHL00201 1 MAKIQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSN----RD 76 (430)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCC----CE
Confidence 67788999999999999999999999999999999999999999999999987656 77778899999999887 89
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|++++++++....+++++|+|+||+|+|||+| +||.| |+|||+|.|+|++|...+.||+|++.++ .+
T Consensus 77 l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e-~~q~G--R~Ref~Q~g~EiiG~~~~~aD~Evi~l~---~~ 150 (430)
T CHL00201 77 ITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYE-RPQSG--RQRQFHQLGIEFIGSIDARADTEVIHLA---MQ 150 (430)
T ss_pred EEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCC-CCcCC--ccceeEEeceEEECCCChhhHHHHHHHH---HH
Confidence 999999999999998777667778999999999999999 67999 9999999999999999999999998887 46
Q ss_pred HHHHhCCcc--eEeeCC------------------------C---------Cc----C-------c--------------
Q 015587 160 IYEEFLAVP--VIKGKK------------------------S---------EL----E-------N-------------- 179 (404)
Q Consensus 160 ~~~~l~~ip--v~~g~~------------------------~---------~~----e-------k-------------- 179 (404)
+++.+|.-. +.+|.. + .. + .
T Consensus 151 ~l~~lGl~~~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~ 230 (430)
T CHL00201 151 IFNELQVKNLILDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSL 230 (430)
T ss_pred HHHHcCCCceEEEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhH
Confidence 777776411 222210 0 00 0 0
Q ss_pred -------------------c------------------------------------------cH---------------H
Q 015587 180 -------------------S------------------------------------------KF---------------V 183 (404)
Q Consensus 180 -------------------f------------------------------------------~F---------------R 183 (404)
+ .| |
T Consensus 231 ~~~~~l~~~~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~PavGfa~g~er 310 (430)
T CHL00201 231 ESTEHFYDVCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAVGCAIGLER 310 (430)
T ss_pred HHHHHHHHHHHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCeeEEEecHHH
Confidence 0 01 8
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcC
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKG 263 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~G 263 (404)
++.+|.+ +...|. .+.+|+|+|++ ++...+|.++++.||++|++|++|.+. .++++++++|++.|
T Consensus 311 l~~~l~~------~~~~~~--~~~~v~v~~~~------~~~~~~a~~ia~~LR~~Gi~veid~~~-~~l~k~~k~A~~~~ 375 (430)
T CHL00201 311 LLLIAKD------NIILPK--QSIDVYIATQG------LKAQKKGWEIIQFLEKQNIKFELDLSS-SNFHKQIKQAGKKR 375 (430)
T ss_pred HHHHHhc------cccCCC--CCCCEEEEEcC------HHHHHHHHHHHHHHHhCCCeEEEeeCC-CCHHHHHHHHHHcC
Confidence 8876543 122333 46789999986 356789999999999999999999987 58999999999999
Q ss_pred CCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHH
Q 015587 264 VPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEV 309 (404)
Q Consensus 264 vP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~ 309 (404)
+|++++||++|+++|+|+|+++.++++.+++++++++.+.++...|
T Consensus 376 ~~~viiiG~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~~~~ 421 (430)
T CHL00201 376 AKACIILGDNEIMDNCITIKWLDEQVQENAQYSNFKQEISYLKKKI 421 (430)
T ss_pred CCEEEEEechHHhCCcEEEEECCCCCcEEEcHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988887776654
|
|
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=318.08 Aligned_cols=179 Identities=31% Similarity=0.485 Sum_probs=166.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccC-cccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG-FAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~-f~~e~~~~~~~g~~~l~~~ 79 (404)
|+++.+++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|. ++|++.. |.+|+|++++.++++++++
T Consensus 15 ~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~~ 93 (264)
T cd00772 15 LADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEED 93 (264)
T ss_pred CccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCce
Confidence 5788889999999999999999999999999999999999999999999995 5787755 6699999999887777789
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++||||+|++++.++++++.||++||+|+|||++|||+|.+|++||+|+|||+|+|+|++|+++++|++|+..++++|.+
T Consensus 94 l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~ 173 (264)
T cd00772 94 FALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAE 173 (264)
T ss_pred EEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHhCCcceEeeCCCCcCcc
Q 015587 160 IYEEFLAVPVIKGKKSELENS 180 (404)
Q Consensus 160 ~~~~l~~ipv~~g~~~~~ekf 180 (404)
+|+++|++|+.++..+.+++|
T Consensus 174 i~~~l~~lp~~~~~~~~~d~~ 194 (264)
T cd00772 174 IARDLAAIDFIEGEADEGAKF 194 (264)
T ss_pred HHHhcCCccEEEEEcCCCccc
Confidence 999998899988776655544
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=338.31 Aligned_cols=272 Identities=17% Similarity=0.228 Sum_probs=228.1
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|++..+++|++||+|.++.++++|++.+++.|+++||++|.||+||+.++|.++.|. ...++||.|.|++| +.+
T Consensus 67 ~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~f~D~~g----~~l 140 (487)
T PLN02530 67 KIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYNFEDKGG----RRV 140 (487)
T ss_pred ccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEEEECCCC----CEE
Confidence 345788999999999999999999999999999999999999999999999876663 47789999999988 899
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+|||+.|++++++++....+. ++|+|+||+|+|||+| +||+| |+|||+|.++|++|.+...||+|++.++ .++
T Consensus 141 ~LRpD~T~~iaR~~~~~~~~~-~~P~r~~y~g~vfR~e-~~q~g--r~REf~Q~giEiiG~~~~~aDaEvi~l~---~~~ 213 (487)
T PLN02530 141 ALRPELTPSLARLVLQKGKSL-SLPLKWFAIGQCWRYE-RMTRG--RRREHYQWNMDIIGVPGVEAEAELLAAI---VTF 213 (487)
T ss_pred ecCCCCcHHHHHHHHhccccc-CCCeEEEEEcCEEcCc-CCCCC--CccceEEcCeeEeCCCCcchhHHHHHHH---HHH
Confidence 999999999999998876553 6999999999999999 67999 9999999999999999999999999887 467
Q ss_pred HHHhCCc--ce--EeeCC-------------C-----------CcCc-----c---------------------------
Q 015587 161 YEEFLAV--PV--IKGKK-------------S-----------ELEN-----S--------------------------- 180 (404)
Q Consensus 161 ~~~l~~i--pv--~~g~~-------------~-----------~~ek-----f--------------------------- 180 (404)
++.+|.- .+ .+|.+ . ..++ +
T Consensus 214 l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~~~ 293 (487)
T PLN02530 214 FKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLD 293 (487)
T ss_pred HHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccCHH
Confidence 7877732 12 22210 0 0000 0
Q ss_pred ----------------------------------c--------------H------------------------------
Q 015587 181 ----------------------------------K--------------F------------------------------ 182 (404)
Q Consensus 181 ----------------------------------~--------------F------------------------------ 182 (404)
| |
T Consensus 294 ~l~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~~~ 373 (487)
T PLN02530 294 DLEALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGEDT 373 (487)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCCCC
Confidence 0 0
Q ss_pred ----------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCCh
Q 015587 183 ----------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSP 252 (404)
Q Consensus 183 ----------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~ 252 (404)
|++. +++. +| .+|.+.+|.||+|++++ ++...+|.++++.||++|++|++|..+ .++
T Consensus 374 pAvGFa~g~~~l~~-~l~~----~g-~~p~~~~~~dVlVi~~~------~~~~~~A~~ia~~LR~~Gi~vevd~~~-~~l 440 (487)
T PLN02530 374 PACGFGFGDAVIVE-LLKE----KG-LLPELPHQVDDVVFALD------EDLQGAAAGVASRLREKGRSVDLVLEP-KKL 440 (487)
T ss_pred CeeEEEEhHHHHHH-HHHh----cC-CCCCCCCCCcEEEEEcC------hHHHHHHHHHHHHHHHCCCeEEEecCC-CCH
Confidence 2222 2221 23 36777889999999987 356789999999999999999999987 589
Q ss_pred hHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhH
Q 015587 253 GWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298 (404)
Q Consensus 253 g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el 298 (404)
++++++|++.|+|++++||++|+++|+|+||++.++++..++++++
T Consensus 441 ~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 441 KWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred HHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 9999999999999999999999999999999999999999988764
|
|
| >KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=325.37 Aligned_cols=281 Identities=22% Similarity=0.307 Sum_probs=248.7
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|...|+|.|.+|++.+.++++..+.+.||+||.||.+.+..||+ .||||+.|+++||.|.-.. ++++|.|+.
T Consensus 181 SPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe-~SGHwqnY~enmF~~e~ek-----e~~~LKPMN 254 (560)
T KOG1637|consen 181 SPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWE-TSGHWQNYSENMFKFEVEK-----EEFALKPMN 254 (560)
T ss_pred CCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhh-hccchhhhhhhceeeeech-----hhhccCccC
Confidence 5799999999999999999999999999999999999999999996 5999999999999997632 679999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCC-CccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~-gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
|++++-||++.-+|||+||+|+..+|.++|+|.++.. ||.|+|.|+|.|+|+ +|+.++..+|+..+++....+|.-+|
T Consensus 255 CPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHI-FCt~~Qi~~Eik~~l~fl~~vY~~fg 333 (560)
T KOG1637|consen 255 CPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHI-FCTPDQVKEEIKGCLDFLDYVYGVFG 333 (560)
T ss_pred CCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceE-EecCccHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887 999999999999999 89999999999999998888888666
Q ss_pred C-cceEeeCCCCcCcc----------------------------------------------------------cH----
Q 015587 166 A-VPVIKGKKSELENS----------------------------------------------------------KF---- 182 (404)
Q Consensus 166 ~-ipv~~g~~~~~ekf----------------------------------------------------------~F---- 182 (404)
. .+..++.+ +++| +|
T Consensus 334 f~f~l~lSTR--Pe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQLDFqLP~ 411 (560)
T KOG1637|consen 334 FTFKLNLSTR--PEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQLDFQLPI 411 (560)
T ss_pred ccceeEeccC--hHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeeeecccChh
Confidence 2 23222222 2222 11
Q ss_pred ----------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHH
Q 015587 183 ----------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEK 234 (404)
Q Consensus 183 ----------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~ 234 (404)
|+++.|+|.+ |+.||.|++|.|++|||++. ....||.+|.++
T Consensus 412 rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~----~gkwPFWlSPRq~~vIpVse------~~~~ya~~V~~q 481 (560)
T KOG1637|consen 412 RFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESY----GGKWPFWLSPRQAVVIPVSE------GPLDYATSVQKQ 481 (560)
T ss_pred hcCceeecccccccchhhHHHHHhhhHHHHHHHHHHHh----CCCCCeeeccceEEEEECCC------cchhHHHHHHHH
Confidence 9999999975 78999999999999999983 568899999999
Q ss_pred HhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCC---ceeeechhhHHHHHHHHHH
Q 015587 235 LCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG---AKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 235 Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~---~k~~v~~~el~~~i~~~l~ 307 (404)
|+.+|+-+++|.++ .+++++++.|...+..+.++||++|++.++|.|+.|++. .+..++++++.+.+.++-+
T Consensus 482 l~~a~f~~Dld~t~-~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~l~~ 556 (560)
T KOG1637|consen 482 LEEAGFYVDLDPTD-STLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSDEFKELKS 556 (560)
T ss_pred HHhhhceeecCCcc-chHHHHHhhhhhcceeEEEEEchhhhhcCceeeeccccccccccceeeHHHHHHHHHHhHh
Confidence 99999999999988 699999999999999999999999999999999999644 3457788888877766543
|
|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=314.08 Aligned_cols=274 Identities=19% Similarity=0.232 Sum_probs=227.1
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccc-cCcccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHI-EGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~-~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|++...++|++||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.+.+|++ ....++||.|.|.+| +.
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g----~~ 76 (412)
T PRK00037 1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGG----RS 76 (412)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCC----CE
Confidence 5678899999999999999999999999999999999999999999999997766765 345789999999877 89
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|++++++++... .+|+|+||+|+|||+| +++.| |.|||+|.|+|+++.+.+.+++|++.++ .+
T Consensus 77 l~LRpd~T~~~ar~~~~~~----~~p~r~~~~g~vfR~e-~~~~g--r~ref~Q~g~ei~g~~~~~~d~E~i~~~---~~ 146 (412)
T PRK00037 77 LTLRPEGTAPVVRAVIEHK----LQPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPLADAEVIALA---AD 146 (412)
T ss_pred EEecCCCcHHHHHHHHhCC----CCCeEEEEEcCccccC-CCCCC--cccceEEcCeeeeCCCCcchhHHHHHHH---HH
Confidence 9999999999999887642 2899999999999999 55788 9999999999999999888999987776 46
Q ss_pred HHHHhCCcceEe------------------------eCC--------------------------C---CcCc---c---
Q 015587 160 IYEEFLAVPVIK------------------------GKK--------------------------S---ELEN---S--- 180 (404)
Q Consensus 160 ~~~~l~~ipv~~------------------------g~~--------------------------~---~~ek---f--- 180 (404)
+++.+|.-.+.+ +.. . +..+ +
T Consensus 147 ~l~~lg~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (412)
T PRK00037 147 ILKALGLKGLKLLINSLGDFEIRANYRKALVGFLEKGLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDE 226 (412)
T ss_pred HHHHcCCCceeeeeccCCCHHHhHHHHHHHHHHHHhCchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhH
Confidence 777665311100 000 0 0000 0
Q ss_pred ------------------------------c--------------------------------H---------------H
Q 015587 181 ------------------------------K--------------------------------F---------------V 183 (404)
Q Consensus 181 ------------------------------~--------------------------------F---------------R 183 (404)
+ | |
T Consensus 227 ~~~~~l~~l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfs~~le~ 306 (412)
T PRK00037 227 ESKEHFEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAVGFAIGVER 306 (412)
T ss_pred HHHHHHHHHHHHHHHcCCCEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceEEEEEcHHH
Confidence 0 1 5
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcC
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKG 263 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~G 263 (404)
++.+|.+.. . +|.||+|+|++. ....++.++++.||++|++|++|..+ .++++++++|+++|
T Consensus 307 l~~~l~~~~-----~------~~~~vlI~~~~~------~~~~~a~~i~~~Lr~~Gi~v~i~~~~-~~~~~~~~~a~~~g 368 (412)
T PRK00037 307 LLLLLEELG-----E------EPVDVYVVPLGE------DAELAALKLAEKLRAAGIRVELDYGG-RKLKKQFKYADKSG 368 (412)
T ss_pred HHHHHHhcC-----C------CCCCEEEEEeCh------HHHHHHHHHHHHHHHCCCeEEEeCCC-CCHHHHHHHHHHcC
Confidence 554444321 1 688999999873 45678999999999999999999876 58999999999999
Q ss_pred CCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 264 VPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 264 vP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
+|++|+||++|+++|+|+|++++++++..++++++++.|++++
T Consensus 369 i~~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 369 ARFVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred CCEEEEEChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998887654
|
|
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=319.81 Aligned_cols=295 Identities=20% Similarity=0.282 Sum_probs=231.6
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHH-HhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG---------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~-~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g---------- 72 (404)
|+.++|+|||.|.|..+.++|.+.|++.| ...|+.+|++|++.|.++| +.|||++.|++-|...+..|
T Consensus 23 YgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~-~aSGh~~~F~D~mv~~~~~~~~~RaD~l~e 101 (551)
T TIGR00389 23 YGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVL-KASGHVDNFTDWMVDCKSCKERFRADHLIE 101 (551)
T ss_pred ccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHH-HhcCCccccCCceeecCCCCCEecchHHHH
Confidence 67799999999999999999999999999 4778999999999999999 67999999998776543221
Q ss_pred ------------------------------CCCC------------------CCceeccCCChhHHHHHHHhhhccCC-C
Q 015587 73 ------------------------------ESDL------------------EVPIAIRPTSETVMYPYFSKWIRGHR-D 103 (404)
Q Consensus 73 ------------------------------~~~l------------------~~~l~LRPt~e~~i~~~~~~~i~s~~-~ 103 (404)
+..+ +...+|||+...+|.-.|++..++.+ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~~~k 181 (551)
T TIGR00389 102 EKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFFRRK 181 (551)
T ss_pred HHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhhHHhHHHHHHhcCCC
Confidence 1111 24678999999999999999887655 7
Q ss_pred CCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChh---------------------------hHHH-------H
Q 015587 104 LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKS---------------------------EADD-------E 149 (404)
Q Consensus 104 lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~---------------------------~a~~-------e 149 (404)
||+-+.|+|+.||+|.+|+.|++|+|||.|.|++.|..... +|.+ .
T Consensus 182 lPfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~~~~~~~eav~~g~i~n~~ 261 (551)
T TIGR00389 182 LPFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQMQESGIGEAVESGMIENET 261 (551)
T ss_pred CCeeehhhhHhhhcccCcccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchhhhccHHHHHHhcccchHH
Confidence 99999999999999999999999999999999998533321 1111 0
Q ss_pred HHHHHHHHHHHHHHhCCcc---------------e-----------------EeeC--CCC------------------c
Q 015587 150 VLQILELYRRIYEEFLAVP---------------V-----------------IKGK--KSE------------------L 177 (404)
Q Consensus 150 ~~~~~~~y~~~~~~l~~ip---------------v-----------------~~g~--~~~------------------~ 177 (404)
+.-.+.....++.++|.-| + ..|. +++ .
T Consensus 262 ~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~Gw~E~~G~a~R~~yDL~~H~~~s~~~l~~~~~ 341 (551)
T TIGR00389 262 LGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYGWIECVGIADRGDYDLTQHSKFSGKSLSVFDK 341 (551)
T ss_pred HHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCCCcEEEEEeccccccChHHHHHhhCCCeEEEee
Confidence 0001111245666776311 0 0110 110 0
Q ss_pred C------------------------------------------------cc----------------------------c
Q 015587 178 E------------------------------------------------NS----------------------------K 181 (404)
Q Consensus 178 e------------------------------------------------kf----------------------------~ 181 (404)
. .| .
T Consensus 342 ~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~VIepS 421 (551)
T TIGR00389 342 LDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLVEIEMVTEVVHGEKYIPHVIEPS 421 (551)
T ss_pred cCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhhhheeeeeccCCcEecceEEEcc
Confidence 0 01 1
Q ss_pred H---HHHHHHHHHcCCC--------CCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 015587 182 F---VQIGVMVMVHGDD--------KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNY 250 (404)
Q Consensus 182 F---Rli~~Lie~~~d~--------~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~ 250 (404)
| |++++|+++..+. .++.||+++||+||+|+|+..+ ++...+|.+|++.||++|++|++|+++
T Consensus 422 ~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~----~el~~~A~eIa~~LR~~GI~VeiD~s~-- 495 (551)
T TIGR00389 422 FGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNK----EELKEIAKEIFQALRKTGIRIKYDDSG-- 495 (551)
T ss_pred cCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCc----HHHHHHHHHHHHHHHHCCCEEEEECCC--
Confidence 1 9999998854441 2579999999999999999742 357789999999999999999999975
Q ss_pred ChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015587 251 SPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 305 (404)
Q Consensus 251 s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~ 305 (404)
++|+|+++|++.|+|++|+||++++++|+|+|++|++++|..++++++.+.+.++
T Consensus 496 sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 496 TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 4999999999999999999999999999999999999999999999988777654
|
This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases. |
| >PLN02734 glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=325.14 Aligned_cols=293 Identities=21% Similarity=0.285 Sum_probs=231.2
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG---------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g---------- 72 (404)
|+.+.|+|||.|.|..+.++|.+.|++.|- .-++-+|++|++.|..+| +.|||++.|.+-|-.....|
T Consensus 95 YGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~-kASGHvd~F~D~mv~~~~~~~~~RADhlie 173 (684)
T PLN02734 95 YGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVL-KASGHVDKFTDLMVKDEKTGTCFRADHLLK 173 (684)
T ss_pred cCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHe-eecCCcccccceeeEcCCCCcEecchHHHH
Confidence 678999999999999999999999999994 457789999999999999 67999999998654322111
Q ss_pred --------------------------------------------------CCCC------------------CCceeccC
Q 015587 73 --------------------------------------------------ESDL------------------EVPIAIRP 84 (404)
Q Consensus 73 --------------------------------------------------~~~l------------------~~~l~LRP 84 (404)
|.+| +...+|||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRP 253 (684)
T PLN02734 174 DFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRP 253 (684)
T ss_pred HHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceecc
Confidence 0011 23678999
Q ss_pred CChhHHHHHHHhhhccCC-CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhh------------------
Q 015587 85 TSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE------------------ 145 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~------------------ 145 (404)
+...+|.--|++.....+ .||+-..|+|+.||+|.+|+.||+|+|||+|.|++.|. ++++
T Consensus 254 ETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv-~P~~k~h~~f~~v~~~~l~l~~ 332 (684)
T PLN02734 254 ETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFV-DPEDKSHPKFSEVADLEFLLFP 332 (684)
T ss_pred cccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhheec-Ccccccccchhhhhhhhhhccc
Confidence 999999999999887655 79999999999999999999999999999999999853 3331
Q ss_pred -----------------HHH------H-HHHHHHHHHHHHHHhCCcc------------------------e--------
Q 015587 146 -----------------ADD------E-VLQILELYRRIYEEFLAVP------------------------V-------- 169 (404)
Q Consensus 146 -----------------a~~------e-~~~~~~~y~~~~~~l~~ip------------------------v-------- 169 (404)
|.+ | +.-.+.....++.++|.-| +
T Consensus 333 ~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~GWiE 412 (684)
T PLN02734 333 REEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIE 412 (684)
T ss_pred HhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecCCCcEE
Confidence 111 1 1112222235566676311 0
Q ss_pred EeeC--CC----------------------C-cC----------------------------------------------
Q 015587 170 IKGK--KS----------------------E-LE---------------------------------------------- 178 (404)
Q Consensus 170 ~~g~--~~----------------------~-~e---------------------------------------------- 178 (404)
..|. ++ + .+
T Consensus 413 ~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~~~l~~~ 492 (684)
T PLN02734 413 CVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKAKLESK 492 (684)
T ss_pred EEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhc
Confidence 0110 00 0 00
Q ss_pred ------------cc-------------------c---------H---HHHHHHHHHcC-----CC--CCCCCCCCCCCce
Q 015587 179 ------------NS-------------------K---------F---VQIGVMVMVHG-----DD--KGLMLPPKVASVQ 208 (404)
Q Consensus 179 ------------kf-------------------~---------F---Rli~~Lie~~~-----d~--~Gl~lP~~iap~q 208 (404)
.| + | |+++++++++. |+ .|+.||+++||+|
T Consensus 493 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~q 572 (684)
T PLN02734 493 GEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIK 572 (684)
T ss_pred CceeeeecccCcceeechhheeeeeeeeeecCceecCceEecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCcE
Confidence 00 0 1 99999999865 66 8999999999999
Q ss_pred EEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCC
Q 015587 209 VIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG 288 (404)
Q Consensus 209 V~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~ 288 (404)
|.|+|+..+ ++..++|.+|++.|+++|++|.+|+++ .++|+|+++|++.|+|++|+||. +|+|+|++|+++
T Consensus 573 VaIlPL~~~----ee~~~~A~eLa~~LR~~GIrVelDd~~-~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRdsg 643 (684)
T PLN02734 573 CTVFPLVQN----QQLNAVAKVISKELTAAGISHKIDITG-TSIGKRYARTDELGVPFAVTVDS----DGSVTIRERDSK 643 (684)
T ss_pred EEEEEecCC----hHHHHHHHHHHHHHHhCCCEEEEECCC-CCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECCCC
Confidence 999999752 457899999999999999999999987 59999999999999999999996 899999999999
Q ss_pred ceeeechhhHHHHHHHHHH
Q 015587 289 AKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 289 ~k~~v~~~el~~~i~~~l~ 307 (404)
+|..++++++++.|.++++
T Consensus 644 eQ~rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 644 DQVRVPVEEVASVVKDLTD 662 (684)
T ss_pred ceEEeeHHHHHHHHHHHHc
Confidence 9999999999887766654
|
|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=302.10 Aligned_cols=179 Identities=60% Similarity=1.134 Sum_probs=167.4
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+|+++++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+++||+++|.++||+++++++..+++++
T Consensus 15 ~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~ 94 (261)
T cd00778 15 LIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPL 94 (261)
T ss_pred CcccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcE
Confidence 46778899999999999999999999999999999999999999999999977799999999999999998875556789
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|+.++.++++++.||++||+|+||+++|||+|.++++||+|+|||+|.|+|++|++++++.+|+..++++|.++
T Consensus 95 ~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i 174 (261)
T cd00778 95 ALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEF 174 (261)
T ss_pred EEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCc
Q 015587 161 YEEFLAVPVIKGKKSELEN 179 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ek 179 (404)
|++++.+|+.++.++.+++
T Consensus 175 ~~~llgl~~~~~~~~~~d~ 193 (261)
T cd00778 175 YEDLLAIPVVKGRKTEWEK 193 (261)
T ss_pred HHHhCCCeEEEecCCcccc
Confidence 9998448998887765553
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >PRK14894 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=306.12 Aligned_cols=296 Identities=19% Similarity=0.252 Sum_probs=232.7
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHH--HhcCceEeccCcccChhhHhhhcccccCcccceEEEEec----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEI--KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS---------- 71 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~--~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~---------- 71 (404)
|+.+.|+|||.|.|..+.++|.+.+++.| .+-+..++++|+|.|..+| +.|||++.|++-|-...+.
T Consensus 26 Ygg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~-~aSGH~~~F~DpmV~CkkCk~ryRaD~Li 104 (539)
T PRK14894 26 YGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVW-KYSGHEETFNDPLVDCRDCKMRWRADHIQ 104 (539)
T ss_pred cCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHe-eeccCCCCCCCceeECCCCCccccCccce
Confidence 67899999999999999999999999988 4667889999999999999 6799999998765433221
Q ss_pred ------CCCC-----------------C---CCceeccCCChhHHHHHHHhhhccCC-CCCeEEEeeeceeecCCCCCCC
Q 015587 72 ------GESD-----------------L---EVPIAIRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTP 124 (404)
Q Consensus 72 ------g~~~-----------------l---~~~l~LRPt~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR~E~~~~~g 124 (404)
|+.+ . .....|||+...++.-.|++.+...+ .||+-+.|+|+.||+|.+|+.|
T Consensus 105 ikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~ 184 (539)
T PRK14894 105 GVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNF 184 (539)
T ss_pred eeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCc
Confidence 2111 1 13589999999999999999877555 7999999999999999999899
Q ss_pred ccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc------------------------e---------Ee
Q 015587 125 FIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP------------------------V---------IK 171 (404)
Q Consensus 125 llR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip------------------------v---------~~ 171 (404)
++|+|||.|.|++. ++++.++.+.....+..-..++.++|.-| + ..
T Consensus 185 l~R~REF~q~EiE~-Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~~Gw~E~~ 263 (539)
T PRK14894 185 LFRVREFEQMEIEY-FVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYDYPNIGVQEIE 263 (539)
T ss_pred eeecccchhheEEE-EeCCCchHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEEEEEECCCCCeEEEE
Confidence 99999999999998 55555555554445554557777787311 0 00
Q ss_pred e--CCCC---------c---------------------------Ccc-------cH---HHHHHHHHHc-C-C-------
Q 015587 172 G--KKSE---------L---------------------------ENS-------KF---VQIGVMVMVH-G-D------- 194 (404)
Q Consensus 172 g--~~~~---------~---------------------------ekf-------~F---Rli~~Lie~~-~-d------- 194 (404)
| .+++ . ++| .| |++.++++.. . +
T Consensus 264 Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~~~~~~~iP~ViEpS~G~dR~~~a~l~~~y~~~~~~~~~~ 343 (539)
T PRK14894 264 GIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQASGRHVVPYVIEPSAGVGRCMLAVMCEGYAEELTKAIPG 343 (539)
T ss_pred EeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEeccCCcccCCceeecCcchhHHHHHHHHHHHhhhhhccccc
Confidence 1 0110 0 000 11 7776665421 1 0
Q ss_pred -----------------------------------------------------------------------------CCC
Q 015587 195 -----------------------------------------------------------------------------DKG 197 (404)
Q Consensus 195 -----------------------------------------------------------------------------~~G 197 (404)
+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~r 423 (539)
T PRK14894 344 EKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGEALLQALPERLPEVEQLLAMPGADQIELGKKLRGQAQPLIDEHYR 423 (539)
T ss_pred ccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcccc
Confidence 123
Q ss_pred --CCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCC-EEEEeCCCCCChhHHHHHHHHcCCCEEEEE----
Q 015587 198 --LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGI-RANSDFRDNYSPGWKYSHWEMKGVPLRIEI---- 270 (404)
Q Consensus 198 --l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Gi-rv~~D~~~~~s~g~k~~~ae~~GvP~~iiI---- 270 (404)
+.||+|+||+||.|+|+.++. +++.++|.+|++.|+++|+ ||.+|++ + ++|+|+++++..|+||+|+|
T Consensus 424 gvLplp~wLAPvQVaVLPLs~~~---~~l~eyAkeI~~~L~~~Gi~rv~~Dds-e-sIGKKyRraDeiGiPy~ITVD~~T 498 (539)
T PRK14894 424 TVLRLKPRLAPIKVAVFPLKRNH---EGLVATAKAVRRQLQVGGRMRTVYDDT-G-AIGKLYRRQDEIGTPFCITVDFDT 498 (539)
T ss_pred eecCCCcCCCCceEEEEeccccc---cchHHHHHHHHHHHHHCCCceEEEcCC-C-CHhHHHHhhhccCCCEEEEEeccc
Confidence 345699999999999998532 3477999999999999998 9999994 3 89999999999999999999
Q ss_pred ---CccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 271 ---GPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 271 ---G~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
|++|.++|+||||+|++++|..++++++++.|.+.+
T Consensus 499 l~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~ 537 (539)
T PRK14894 499 IGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRV 537 (539)
T ss_pred cccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHh
Confidence 999999999999999999999999999999887664
|
|
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=300.49 Aligned_cols=162 Identities=20% Similarity=0.368 Sum_probs=153.7
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
.+++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|. ++||++.|.+|||+++|+++ ++++|||
T Consensus 18 ~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~-~sg~~~~~~~emy~~~d~~~----~~l~LrP 92 (255)
T cd00779 18 QTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWK-ESGRWDAYGPELLRLKDRHG----KEFLLGP 92 (255)
T ss_pred cCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHH-hcCCccccCcccEEEecCCC----CeEEEec
Confidence 478999999999999999999999999999999999999999999994 57999999999999999887 7899999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
|+|+.++.++++++.||++||+|+|||++|||+|.+|++||+|+|||+|.|+|++|.+.++|++|+..++.+|.++|+.|
T Consensus 93 t~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~L 172 (255)
T cd00779 93 THEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRL 172 (255)
T ss_pred CCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999998
Q ss_pred CCcceEee
Q 015587 165 LAVPVIKG 172 (404)
Q Consensus 165 ~~ipv~~g 172 (404)
| +|+.++
T Consensus 173 g-l~~~~~ 179 (255)
T cd00779 173 G-LPFVKV 179 (255)
T ss_pred C-CcEEEE
Confidence 7 687543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=302.02 Aligned_cols=275 Identities=15% Similarity=0.193 Sum_probs=221.4
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|++..+++|+.||+|..+.+++.|++.+++.|+++||++|.||+|++.++|....+..+...++||.|+|++| +.+
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~l 76 (423)
T PRK12420 1 MMEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGK----RDL 76 (423)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCC----cee
Confidence 6788999999999999999999999999999999999999999999999997654555667789999999988 899
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+|||+.|++++++++... ..++|+|+||+|+|||+| +++.| |.|||+|.+++++|.+...||+|++.++ .++
T Consensus 77 ~LRpD~T~~iaR~va~~~--~~~~p~r~~y~g~vfR~~-~~~~g--r~rE~~Q~g~EiiG~~~~~adaEvi~la---~~~ 148 (423)
T PRK12420 77 ALRYDLTIPFAKVVAMNP--NIRLPFKRYEIGKVFRDG-PIKQG--RFREFIQCDVDIVGVESVMAEAELMSMA---FEL 148 (423)
T ss_pred cccccccHHHHHHHHhCc--CCCCCeeEEEEcceECCC-CCCCC--ccceeEECCeeeECCCCCcccHHHHHHH---HHH
Confidence 999999999999988752 246899999999999999 56889 9999999999999999999999999988 477
Q ss_pred HHHhCCcceE--ee-------------CCCCc--------Ccc-------------------------------------
Q 015587 161 YEEFLAVPVI--KG-------------KKSEL--------ENS------------------------------------- 180 (404)
Q Consensus 161 ~~~l~~ipv~--~g-------------~~~~~--------ekf------------------------------------- 180 (404)
++.+|. .+. +| ...+. +++
T Consensus 149 l~~lg~-~~~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~ 227 (423)
T PRK12420 149 FRRLNL-EVTIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSI 227 (423)
T ss_pred HHHCCC-CEEEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhH
Confidence 777763 321 11 11000 000
Q ss_pred ---------------------------------------------c------H-----------------HHHHHHHHHc
Q 015587 181 ---------------------------------------------K------F-----------------VQIGVMVMVH 192 (404)
Q Consensus 181 ---------------------------------------------~------F-----------------Rli~~Lie~~ 192 (404)
+ | |.= .|++.+
T Consensus 228 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD-~L~~~f 306 (423)
T PRK12420 228 ADFKEAFNNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYD-NIIGAF 306 (423)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccHH-HHHHHh
Confidence 0 0 221 133333
Q ss_pred CC---C---CCCC---------C---CCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhh-CCCEEEEeCCCCCChh
Q 015587 193 GD---D---KGLM---------L---PPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCE-AGIRANSDFRDNYSPG 253 (404)
Q Consensus 193 ~d---~---~Gl~---------l---P~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~-~Girv~~D~~~~~s~g 253 (404)
+. + -|+. + ...-.|.||+|+|++. . ..+.++++.||+ +|++|++|.++ .+++
T Consensus 307 ~~~~~~~pAvGfa~~~~~l~~~l~~~~~~~~~~dvlI~~~~~------~--~~a~~ia~~Lr~~~Gi~ve~~~~~-~~l~ 377 (423)
T PRK12420 307 RGDDMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGT------E--LQCLQIAQQLRSTTGLKVELELAG-RKLK 377 (423)
T ss_pred CCCCCCCCceeEEEcHHHHHHHHHhcCCCCCCceEEEEEcCC------H--HHHHHHHHHHHhhcCCeEEEecCC-cCHH
Confidence 11 0 1110 0 0111578999999752 1 258899999999 99999999987 5999
Q ss_pred HHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhH
Q 015587 254 WKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298 (404)
Q Consensus 254 ~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el 298 (404)
+++++|.+.|+|+.++||++|.++|+|+|+++.++++..++++++
T Consensus 378 ~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 378 KALNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred HHHHHHHHcCCCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 999999999999999999999999999999999999999998775
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=294.41 Aligned_cols=163 Identities=20% Similarity=0.284 Sum_probs=147.7
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+.+++.|++++++.++++||++|.||+|++.++|.+ +||++.|.++||++++ ++ +.++|||
T Consensus 17 ~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~~~-~~----~~l~LRP 90 (298)
T cd00771 17 EAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPFEE-ED----EEYGLKP 90 (298)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEecc-CC----ceEEEcc
Confidence 4689999999999999999999999999999999999999999999976 8999999999999965 33 7899999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|+++++++++++.||++||+|++|+|+|||+|.++ ++||+|+|||+|.|+|++ ++++++++|+..+++++.++|++
T Consensus 91 ~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~~e~~~~e~~e~l~~~~~~l~~ 169 (298)
T cd00771 91 MNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CTPDQIKEEIKGVLDLIKEVYSD 169 (298)
T ss_pred cCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999775 579999999999999997 55688999999999999999999
Q ss_pred hCC--cceEeeCC
Q 015587 164 FLA--VPVIKGKK 174 (404)
Q Consensus 164 l~~--ipv~~g~~ 174 (404)
+|. .++.+|.+
T Consensus 170 lgl~~~~i~l~~~ 182 (298)
T cd00771 170 FGFFDYKVELSTR 182 (298)
T ss_pred cCCCcEEEEEEcC
Confidence 974 23444443
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=308.52 Aligned_cols=276 Identities=16% Similarity=0.151 Sum_probs=221.7
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceecc
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
+..++||+||+|..+.+|++|++.+++.|+++||++|.||+||+.++|....|.. .++||.|.|++| +.++||
T Consensus 327 ~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged---~k~mY~f~D~gG----r~LaLR 399 (763)
T PLN02972 327 PKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED---SKLIYDLADQGG----ELCSLR 399 (763)
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc---hhheEEEECCCC----CEEEeC
Confidence 4789999999999999999999999999999999999999999999997655532 368999999988 899999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~~~y~~~~~ 162 (404)
|+.|++++++++.+. ..|+|+||+|+|||+| +||+| |+|||+|.+++++|. ++..+|+|++.++. ++++
T Consensus 400 PDlTvPiAR~vA~n~----~~p~KrYyiG~VFR~e-~pqkG--R~REF~Q~G~EIIG~~~~~~aDAEVI~La~---E~L~ 469 (763)
T PLN02972 400 YDLTVPFARYVAMNG----ITSFKRYQIAKVYRRD-NPSKG--RYREFYQCDFDIAGVYEPMGPDFEIIKVLT---ELLD 469 (763)
T ss_pred CCChHHHHHHHHhCC----CCcceEEEeccEEecC-CCCCC--CCccceEEeEEEEcCCCcchhhHHHHHHHH---HHHH
Confidence 999999999988652 3489999999999999 57999 999999999999997 55578999998883 6667
Q ss_pred HhCCcce--Eee-------------CCC----------------Cc-------------------------------C--
Q 015587 163 EFLAVPV--IKG-------------KKS----------------EL-------------------------------E-- 178 (404)
Q Consensus 163 ~l~~ipv--~~g-------------~~~----------------~~-------------------------------e-- 178 (404)
.+|.-.+ .+| ... .+ .
T Consensus 470 ~LGi~df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~ev 549 (763)
T PLN02972 470 ELDIGTYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLEL 549 (763)
T ss_pred hCCCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHH
Confidence 6653111 110 000 00 0
Q ss_pred ---------cc---------------------------------------c-----------------------------
Q 015587 179 ---------NS---------------------------------------K----------------------------- 181 (404)
Q Consensus 179 ---------kf---------------------------------------~----------------------------- 181 (404)
.+ +
T Consensus 550 Ld~L~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv 629 (763)
T PLN02972 550 LSKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLV 629 (763)
T ss_pred HHHHHHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCccceeeecCCchhHH
Confidence 00 0
Q ss_pred --H---------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEE
Q 015587 182 --F---------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244 (404)
Q Consensus 182 --F---------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~ 244 (404)
| |++.+|.+. +......++ ..+.+|+|++.+ +.....+.++++.||++||++++
T Consensus 630 ~~FgG~~vPAVGFSiGIERL~~~L~~~-~~~~~~~~~--~~~~dVlV~s~g------~~~l~~alkia~~LR~aGI~aE~ 700 (763)
T PLN02972 630 GMFSGKQVPAVGVSLGIERVFAIMEQQ-EEEKSQVIR--PTETEVLVSIIG------DDKLALAAELVSELWNAGIKAEY 700 (763)
T ss_pred HhcCCCCCCEEEEEecHHHHHHHHHHc-ccCCCCCCC--CCCCcEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEE
Confidence 0 777655442 110000111 234689999876 35677899999999999999998
Q ss_pred eCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 245 D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
+. . .++++++.+|++.|+|+.++||++|+++|+|+||++.++++..++++++++.+++.|.
T Consensus 701 ~~-~-~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 701 KV-S-TRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred eC-C-CCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 76 3 4899999999999999999999999999999999999999999999999988876653
|
|
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=293.52 Aligned_cols=297 Identities=22% Similarity=0.365 Sum_probs=236.5
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHh--cCceEeccCcccChhhHhhhcccccCcccceEEEEecC---------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKK--MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~--~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g--------- 72 (404)
|+.++|+|||.|.|..+.++|.+.|++.|-. -|+.+|++|++.|.++| +.|||++.|.+-|-..++.|
T Consensus 26 YGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~-kASGHvd~FsDplv~c~~c~~~yRADHLi 104 (558)
T COG0423 26 YGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVW-KASGHVDKFSDPLVECKKCGERYRADHLI 104 (558)
T ss_pred ecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHh-hhcCcccccccceeeccccchhhhhhHHH
Confidence 6889999999999999999999999999944 68999999999999999 67999999998765443321
Q ss_pred ----------C---------------------CCC------------------CCceeccCCChhHHHHHHHhhhccCC-
Q 015587 73 ----------E---------------------SDL------------------EVPIAIRPTSETVMYPYFSKWIRGHR- 102 (404)
Q Consensus 73 ----------~---------------------~~l------------------~~~l~LRPt~e~~i~~~~~~~i~s~~- 102 (404)
+ ++| +....|||+...+|.--|++..++.|
T Consensus 105 Ee~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~ 184 (558)
T COG0423 105 EEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARN 184 (558)
T ss_pred HHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhcc
Confidence 0 011 25788999999999888998877555
Q ss_pred CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChh-------------------hHHHH----------H---
Q 015587 103 DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKS-------------------EADDE----------V--- 150 (404)
Q Consensus 103 ~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~-------------------~a~~e----------~--- 150 (404)
.||+-+.|+|+.||+|.+|..|++|+|||+|+|++.|..... ++..+ +
T Consensus 185 klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n 264 (558)
T COG0423 185 KLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVEN 264 (558)
T ss_pred CCCeEEEeechhhccccCcccceeehhhhhhhheeeEECCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceeec
Confidence 699999999999999999999999999999999998544333 22222 1
Q ss_pred --H-HHHHHHHHHHHHhCCcc------------------------e---------Eee--CCC-----------------
Q 015587 151 --L-QILELYRRIYEEFLAVP------------------------V---------IKG--KKS----------------- 175 (404)
Q Consensus 151 --~-~~~~~y~~~~~~l~~ip------------------------v---------~~g--~~~----------------- 175 (404)
. ..+.....++.++|.-+ + ..| .++
T Consensus 265 ~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v 344 (558)
T COG0423 265 ETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYDLSRHSKFSGEDLTV 344 (558)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEecCCCceEEEEEeecccccchhhhhhhcccccee
Confidence 1 22233345666776311 0 011 000
Q ss_pred ------------------------Cc-----------------------------------------Ccc-------cH-
Q 015587 176 ------------------------EL-----------------------------------------ENS-------KF- 182 (404)
Q Consensus 176 ------------------------~~-----------------------------------------ekf-------~F- 182 (404)
+. ++| .|
T Consensus 345 ~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEPSfG 424 (558)
T COG0423 345 FREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEPSFG 424 (558)
T ss_pred eeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCccccccchhheeeeeeccCceecCceeccCCC
Confidence 00 001 12
Q ss_pred --HHHHHHHHHc-CCCCC------CCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChh
Q 015587 183 --VQIGVMVMVH-GDDKG------LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPG 253 (404)
Q Consensus 183 --Rli~~Lie~~-~d~~G------l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g 253 (404)
|++-++++.- ..+.+ |.|||++||++|+|+|+..+ +++.+.|.+|.+.|++.|+.|.+|+++ ++|
T Consensus 425 idRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k----~~l~~~a~~i~~~L~~~~~~v~yDdsG--sIG 498 (558)
T COG0423 425 IDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKK----DELVEIAKEIFEKLRELGFNVDYDDSG--SIG 498 (558)
T ss_pred chHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecc----cchhHHHHHHHHHHHhcCceEEecCCC--cHh
Confidence 9888877743 22222 67999999999999999865 468899999999999999999999986 899
Q ss_pred HHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 254 WKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 254 ~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
++++.++..|+|++|.|..+.++.++||||+|||.+|..|++++|++.|.+++.
T Consensus 499 rRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~~ 552 (558)
T COG0423 499 RRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELIK 552 (558)
T ss_pred hhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999988775
|
|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=286.39 Aligned_cols=191 Identities=16% Similarity=0.179 Sum_probs=167.1
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|++.|+|.|++++++|++++++.+.+.||++|.||.|++.++|+ ++||++.|.++||++.+ ++++|+||+
T Consensus 41 G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~-~sg~~~~~~~~~f~v~~-------~~~~L~pt~ 112 (297)
T cd00770 41 GSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVME-GTGQLPKFDEQLYKVEG-------EDLYLIATA 112 (297)
T ss_pred CCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHh-hcCcCccChhcccEecC-------CCEEEeecC
Confidence 4569999999999999999999999999999999999999999995 59999999999999964 679999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCC----CCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP----TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~----~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
|+.++.++++++.||++||+|++|+|+|||+|.+|. +||+|+|||+|.|+|+ +++++++++++..++++|.++|+
T Consensus 113 e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~~~~~i~~ 191 (297)
T cd00770 113 EVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELISNAEEILQ 191 (297)
T ss_pred CHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998753 7999999999999998 66669999999999999999999
Q ss_pred HhCCcceEeeCCCCc-------Ccc----------------------c-------------------H------------
Q 015587 163 EFLAVPVIKGKKSEL-------ENS----------------------K-------------------F------------ 182 (404)
Q Consensus 163 ~l~~ipv~~g~~~~~-------ekf----------------------~-------------------F------------ 182 (404)
+|| +|+.....+.. .+| + |
T Consensus 192 ~lg-l~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r~~i~y~~~~~~~~~~~~~~~~~~~~~~ 270 (297)
T cd00770 192 ELG-LPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHTLNGTALATP 270 (297)
T ss_pred HcC-CcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccCccChhhhhcCcEEecCCCCCeeeeeEecccchHHH
Confidence 986 67543221111 111 1 1
Q ss_pred HHHHHHHHHcCCCCCCCCCCC-CCCc
Q 015587 183 VQIGVMVMVHGDDKGLMLPPK-VASV 207 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~-iap~ 207 (404)
|+|++|+|+|+|++|+++||. ++|+
T Consensus 271 R~l~alle~~~~~~g~v~~P~~l~py 296 (297)
T cd00770 271 RTIVAILENYQTEDGSVVIPEVLRPY 296 (297)
T ss_pred HHHHHHHHhCcCCCCcEeCchhhccc
Confidence 999999999999999999864 5554
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=284.47 Aligned_cols=260 Identities=17% Similarity=0.196 Sum_probs=214.0
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcc-cccCcccceEEEEecCCCCCCCceecc
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKD-HIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g-~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
.+++|+.||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.+..| +.+.+.++||+|.|.+| +.++||
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g----~~l~LR 76 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGG----RSLTLR 76 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCC----CEEeec
Confidence 3689999999999999999999999999999999999999999999977654 34457799999999887 899999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+.|+.++++++.... ++++|+|+||+|+|||+| +++.| |.|||+|.|+|++|.+...+|+|++.++ .++++.
T Consensus 77 pD~T~~iaR~~~~~~~-~~~~p~r~~y~g~vfR~e-~~~~g--r~ref~Q~g~eiig~~~~~~d~E~i~l~---~e~l~~ 149 (397)
T TIGR00442 77 PEGTAPVARAVIENKL-LLPKPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPLADAEIIALA---AEILKE 149 (397)
T ss_pred CCCcHHHHHHHHhccc-ccCCCeEEEEEcCeecCC-CCCCC--cccceEEcCeeeeCCCCHHHHHHHHHHH---HHHHHH
Confidence 9999999999887643 468999999999999999 45778 9999999999999999999999988877 477777
Q ss_pred hCCcce--Eee--------------------C-CC--Cc------------------C---cc-----------------
Q 015587 164 FLAVPV--IKG--------------------K-KS--EL------------------E---NS----------------- 180 (404)
Q Consensus 164 l~~ipv--~~g--------------------~-~~--~~------------------e---kf----------------- 180 (404)
+|.-.+ .+| . +. .. + .|
T Consensus 150 lg~~~~~i~i~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (397)
T TIGR00442 150 LGIKDFTLEINSLGILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRA 229 (397)
T ss_pred cCCCceEEEecCcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHH
Confidence 763111 111 0 00 00 0 00
Q ss_pred ----------------------------------------------------------cH---------------HHHHH
Q 015587 181 ----------------------------------------------------------KF---------------VQIGV 187 (404)
Q Consensus 181 ----------------------------------------------------------~F---------------Rli~~ 187 (404)
.| |++.+
T Consensus 230 ~l~~l~~~l~~~~~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfs~~~~~l~~~ 309 (397)
T TIGR00442 230 HFEELKELLDALGIPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPAVGFAIGIERLLLL 309 (397)
T ss_pred HHHHHHHHHHHcCCCEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCceEEeeecHHHHHHH
Confidence 00 66655
Q ss_pred HHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEE
Q 015587 188 MVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLR 267 (404)
Q Consensus 188 Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~ 267 (404)
|.+. | ..|++.+|.+|+|++++ ++...++.++++.||++|++|+++... .++++++++|+..|+|++
T Consensus 310 l~~~-----~-~~~~~~~~~~vlV~~~~------~~~~~~~~~i~~~Lr~~gi~v~~~~~~-~~l~k~~~~a~~~g~~~~ 376 (397)
T TIGR00442 310 LEEL-----G-LEPPEESSPDVYVVPLG------EEAELEALKLAQKLRKAGIRVEVDLGG-RKLKKQLKYADKLGARFA 376 (397)
T ss_pred HHhc-----C-CCCCCCCCCcEEEEEeC------HHHHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHHHHHcCCCEE
Confidence 5441 2 24555678899999876 356778999999999999999999876 689999999999999999
Q ss_pred EEECccccCCCeEEEEECCCC
Q 015587 268 IEIGPKDLANDQVRAVRRDNG 288 (404)
Q Consensus 268 iiIG~~E~~~~~V~v~~r~~~ 288 (404)
|+||++|++.++|+||++.+|
T Consensus 377 i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 377 VILGEDELANGTVTLKDLETG 397 (397)
T ss_pred EEEChhHHhCCeEEEEeCCCC
Confidence 999999999999999999875
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=284.42 Aligned_cols=192 Identities=17% Similarity=0.218 Sum_probs=169.1
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
..+|++.|+|.|++++++|++++.+.+.+.||++|.||.|.+.++|. ++||+++|.++||++++ +.++|+||
T Consensus 161 ~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~-~~G~~~~f~~~~y~i~~-------~~~~L~pT 232 (418)
T TIGR00414 161 TGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLD-GTGQLPKFEEDIFKLED-------TDLYLIPT 232 (418)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHh-hcCccccccccceEecC-------CCEEEEeC
Confidence 35669999999999999999999999999999999999999999994 69999999999999963 56999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC----CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~----~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++.++++++.||++||+|++|+++|||+|.++ ++||+|+|||+|.|+|+ +++++++.+++..+++.|.++|
T Consensus 233 sE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~-f~~~e~s~~~~~~~~~~~~~i~ 311 (418)
T TIGR00414 233 AEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVK-FCKPEESAEELEEMTSDAEQIL 311 (418)
T ss_pred CcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEE-EcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999853 67999999999999987 7788999999999999999999
Q ss_pred HHhCCcceEeeCCCCc-------Ccc----------------------cH------------------------------
Q 015587 162 EEFLAVPVIKGKKSEL-------ENS----------------------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~~~-------ekf----------------------~F------------------------------ 182 (404)
+.|| +|+.+...+.. .+| +|
T Consensus 312 ~~Lg-lp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~y~~~~~~~~~~vh~ln~~~~ai 390 (418)
T TIGR00414 312 QELE-LPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKNKGKNKYVHTLNGTALAI 390 (418)
T ss_pred HHcC-CceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcEEECCCCCceEEEEeecCcchHH
Confidence 9886 78643211111 111 11
Q ss_pred -HHHHHHHHHcCCCCCCC-CCCCCCCc
Q 015587 183 -VQIGVMVMVHGDDKGLM-LPPKVASV 207 (404)
Q Consensus 183 -Rli~~Lie~~~d~~Gl~-lP~~iap~ 207 (404)
|+|++|+|+|+|++|.+ ||..++|+
T Consensus 391 ~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 391 GRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred HHHHHHHHHHccCCCCCEeCChhcccc
Confidence 99999999999999976 99999886
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=285.44 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=169.5
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.+|++.|+|.|++++++|++++.+.+. +.||++|.||.|.+.++|. ++||++.|.++||++.+ ++++|+||
T Consensus 159 G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~-~~G~~~~f~~~ly~i~~-------~~~~L~pT 230 (425)
T PRK05431 159 GSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMY-GTGQLPKFEEDLYKIED-------DDLYLIPT 230 (425)
T ss_pred CceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHh-hcCccccchhhceEecC-------CCEEEEeC
Confidence 556999999999999999999988887 9999999999999999995 58999999999999963 67999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++.++++++.||++||+|++++++|||+|.. +++||+|+|||+|.|+|+ +++++++++++..++++|.++|
T Consensus 231 sE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~-f~~~e~s~~~~~~~l~~~~~i~ 309 (425)
T PRK05431 231 AEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVK-FTKPEDSYAELEELTANAEEIL 309 (425)
T ss_pred CcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEE-EECHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984 368999999999999997 7777999999999999999999
Q ss_pred HHhCCcceEeeCCCCc-------Ccc----------------------c-------------------H-----------
Q 015587 162 EEFLAVPVIKGKKSEL-------ENS----------------------K-------------------F----------- 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~~~-------ekf----------------------~-------------------F----------- 182 (404)
+.|| +|+.+...+.. .+| + |
T Consensus 310 ~~Lg-lpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr~~i~~~~~~~~~~~~~htln~t~~a~ 388 (425)
T PRK05431 310 QKLE-LPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRYRDEGDGKPELVHTLNGSGLAV 388 (425)
T ss_pred HHcC-CcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhhcCcEEecCCCCceeEEEEeCCchhhH
Confidence 9886 78644221111 111 1 1
Q ss_pred -HHHHHHHHHcCCCCC-CCCCCCCCCce
Q 015587 183 -VQIGVMVMVHGDDKG-LMLPPKVASVQ 208 (404)
Q Consensus 183 -Rli~~Lie~~~d~~G-l~lP~~iap~q 208 (404)
|+|++|+|+|+|++| ++||+.++|+.
T Consensus 389 ~R~l~ailE~~q~~~g~i~iP~~l~py~ 416 (425)
T PRK05431 389 GRTLVAILENYQQADGSVTIPEVLRPYM 416 (425)
T ss_pred HHHHHHHHHHCCCCCCcEECChhhhccc
Confidence 999999999999999 99999999974
|
|
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=269.04 Aligned_cols=279 Identities=18% Similarity=0.176 Sum_probs=227.3
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceec
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~L 82 (404)
...++|||+||-|..+.++++|.+.+.+.|++||+..|+||+||-.++|..+.|.- ++-+|.+.|+|| +.++|
T Consensus 59 ~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEd---skLiYdlkDQGG----El~SL 131 (518)
T KOG1936|consen 59 SLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGED---SKLIYDLKDQGG----ELCSL 131 (518)
T ss_pred eecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccc---cceeEehhhcCC----cEEEe
Confidence 35789999999999999999999999999999999999999999999998887742 388999999999 99999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC--CCCccccceeEEeceeeec-CChhhHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN--PTPFIRSREFLWQEGHTAF-ATKSEADDEVLQILELYRR 159 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~--~~gllR~REF~q~e~~~~~-~~~~~a~~e~~~~~~~y~~ 159 (404)
||+.|++++++.+.+ .. --++.||++.|||++ .| ++| |+|||+|+|.+++| .++--+|+|...++ .+
T Consensus 132 RYDLTVPfARylAmN-ki---~sikRy~iAkVyRRd-~P~mtrG--R~REFYQcDFDIAG~~d~M~pdaE~lkiv---~e 201 (518)
T KOG1936|consen 132 RYDLTVPFARYLAMN-KI---TSIKRYHIAKVYRRD-QPAMTRG--RYREFYQCDFDIAGQFDPMIPDAECLKIV---VE 201 (518)
T ss_pred ecccccHHHHHHHHc-cc---ccceeeeEEEEEecc-Cchhhch--hhhhhhccCccccccCCCCCchHHHHHHH---HH
Confidence 999999999988766 22 348999999999999 46 789 99999999999999 67888999998887 48
Q ss_pred HHHHhCCcceE---------------eeC----------------CCCcCcc----------------------------
Q 015587 160 IYEEFLAVPVI---------------KGK----------------KSELENS---------------------------- 180 (404)
Q Consensus 160 ~~~~l~~ipv~---------------~g~----------------~~~~ekf---------------------------- 180 (404)
+++.|++-.+. .|. |.+|+..
T Consensus 202 ~L~~l~Igd~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~ 281 (518)
T KOG1936|consen 202 ILSRLGIGDYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLD 281 (518)
T ss_pred HHhhcCccceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHH
Confidence 88877642221 011 1111100
Q ss_pred --------------------------------------------------------------------------------
Q 015587 181 -------------------------------------------------------------------------------- 180 (404)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (404)
T Consensus 282 eL~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~ 361 (518)
T KOG1936|consen 282 ELLEKLIADPKLSQNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGS 361 (518)
T ss_pred HHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhcccc
Confidence
Q ss_pred --------------------cH-----------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhh
Q 015587 181 --------------------KF-----------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQG 223 (404)
Q Consensus 181 --------------------~F-----------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~ 223 (404)
.| |+...|.+... ..|..+- -..+||+|...+. .
T Consensus 362 ~e~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG~S~GVeRiFsile~r~~-~~~~~iR--~t~t~V~V~~~~k------~ 432 (518)
T KOG1936|consen 362 TEPGGVGSVAAGGRYDNLVGMFDKKGDKVPCVGQSVGVERIFSILEQRAA-TVATKIR--TTETQVYVAAAGK------N 432 (518)
T ss_pred ccCCCccccccCcchhhHHHHhccccCcCCccceeehHhHHHHHHHHHHH-hhhhccc--cCceEEEEEecCC------c
Confidence 00 66655544321 1122222 2357888887663 3
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015587 224 IFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 224 ~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~ 303 (404)
......++.+.||++||..++-...+.++-+||+++++.|||++++||.+|++.|.|.|++..+++...++.++++..++
T Consensus 433 ~l~eR~k~v~~Lw~agI~aE~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~ 512 (518)
T KOG1936|consen 433 LLFERLKVVNALWDAGIKAEYLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELK 512 (518)
T ss_pred hHHHHHHHHHHHHhcCcchhhhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHH
Confidence 57788899999999999999887766789999999999999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 015587 304 ELLE 307 (404)
Q Consensus 304 ~~l~ 307 (404)
+++.
T Consensus 513 ~~l~ 516 (518)
T KOG1936|consen 513 DLLS 516 (518)
T ss_pred HHhc
Confidence 8775
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=276.28 Aligned_cols=166 Identities=21% Similarity=0.349 Sum_probs=149.7
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHH-HHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCC------
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFD-AEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE------ 73 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~-~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~------ 73 (404)
|+++.+++|+++|.|+|++||+.|++++. ..+++.||+++++|.|+|.+.|.+ +||+++|.++||++++.++
T Consensus 206 lidk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k-~ghl~gF~~e~y~Vt~~~~d~d~~~ 284 (520)
T TIGR00415 206 WVKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNK-MRYLEGLPEGMYYCCAPKRDPELFE 284 (520)
T ss_pred CeeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcc-cCCCCCCchhheEEecCCCCcchhh
Confidence 45778999999999999999999999995 677889999999999999999976 5999999999999986442
Q ss_pred --------------CCC----CC-ceeccCCChhHHHHHHHhhhccCCCCCeEEEe-eeceeecCCCCCCCccccceeEE
Q 015587 74 --------------SDL----EV-PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLW 133 (404)
Q Consensus 74 --------------~~l----~~-~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q-~~~vfR~E~~~~~gllR~REF~q 133 (404)
++| ++ .++|+||+|++++.++++|+.++++||++++| |++|||||.++++||+|++||+|
T Consensus 285 ~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~k 364 (520)
T TIGR00415 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLR 364 (520)
T ss_pred ccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEE
Confidence 111 33 89999999999999999999999999999999 77999999877899999999999
Q ss_pred eceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 134 QEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 134 ~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
+|+|+ ++++++|.++..++++.|..+++.|+ +|+
T Consensus 365 vE~v~-~~tpEea~e~~e~mle~~~~~l~~L~-Lpy 398 (520)
T TIGR00415 365 VECVW-IAEPEETEEIRDKTLELAEDAADELD-LEW 398 (520)
T ss_pred EEEEE-EeCHHHHHHHHHHHHHHHHHHHHHcC-CCe
Confidence 99999 99999999999999999999998775 743
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=265.20 Aligned_cols=165 Identities=18% Similarity=0.305 Sum_probs=146.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHH-HHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCC------
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAE-IKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE------ 73 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~-~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~------ 73 (404)
|+|..+++|++.|+|.|+++++.|++++++. .+++||+++.||.|++.++|.+ +||+++|.++||++++.++
T Consensus 206 lldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~k-sGhl~~F~e~my~V~~~~~d~e~~~ 284 (517)
T PRK00960 206 WVKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYK-MRYLEGLPEGMYYVCPPKRDPEYFE 284 (517)
T ss_pred CccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhh-cCCccCChhhceEeecccccccccc
Confidence 4677899999999999999999999999876 6888999999999999999965 7999999999999974221
Q ss_pred ------------------CCC-CCceeccCCChhHHHHHHHhhhccCCCCCeEEEe-eeceeecCCCCCCCccccceeEE
Q 015587 74 ------------------SDL-EVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLW 133 (404)
Q Consensus 74 ------------------~~l-~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q-~~~vfR~E~~~~~gllR~REF~q 133 (404)
+.| ++.++|||++|++++.+|++++.||++||+|+++ +|+|||||....+||+|+|||+|
T Consensus 285 ~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~k 364 (517)
T PRK00960 285 EFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHR 364 (517)
T ss_pred chhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEE
Confidence 011 3578999999999999999999999999999999 88999999656789999999999
Q ss_pred eceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc
Q 015587 134 QEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP 168 (404)
Q Consensus 134 ~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip 168 (404)
.|+|+ +++++++.+++..+++....+++.|+ +|
T Consensus 365 vE~h~-f~tpEqs~ee~e~ll~~~e~i~~~Lg-Lp 397 (517)
T PRK00960 365 IEIVW-LGTPEQVEEIRDELLKYAHILAEKLD-LE 397 (517)
T ss_pred EEEEE-EeCHHHHHHHHHHHHHHHHHHHHHcC-CC
Confidence 99995 99999999999999977777888875 77
|
|
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=230.61 Aligned_cols=147 Identities=31% Similarity=0.465 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 20 IWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 20 i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
|+++|++++++.+. +.||++|.||+|++.++|.+ +||++.|.++||+++++++ +.++||||+|++++.++++++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~----~~~~L~pt~~~~~~~~~~~~~ 75 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGD----EEYCLRPTSEPGIYSLFKNEI 75 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTT----EEEEE-SSSHHHHHHHHHHHE
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeeccc----ccEEeccccccceeeeeccee
Confidence 68999999999999 99999999999999999976 9999999999999999887 889999999999999999999
Q ss_pred cc-CCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcceEee
Q 015587 99 RG-HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKG 172 (404)
Q Consensus 99 ~s-~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv~~g 172 (404)
.+ |++||++++|+|+|||+|.++++|++|+|||+|.|+|+++.+ +++..++..+++.+.++++.||.-|+.+.
T Consensus 76 ~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~i~~~lgl~~~~~~ 149 (173)
T PF00587_consen 76 RSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKEILEKLGLEPYRIV 149 (173)
T ss_dssp EBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHTTSGCEEEE
T ss_pred eeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 99 999999999999999999888999999999999999998887 99999999999999999999973387543
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=242.71 Aligned_cols=299 Identities=20% Similarity=0.263 Sum_probs=225.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHH-HhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG---------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~-~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g---------- 72 (404)
|+.++|.|||.|.|.++..+|.+.||+.| -.-+..+|+.|+|.|..+| |.|||++.|.+=|-.=...|
T Consensus 32 YgGVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~Vl-kaSGHVdkF~D~mvkD~ktGecfRADHLvk 110 (599)
T KOG2298|consen 32 YGGVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVL-KASGHVDKFADWMVKDEKTGECFRADHLVK 110 (599)
T ss_pred hcCcccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHh-hcccchhhhhHHHhcCccccceehhhHHHH
Confidence 78899999999999999999999999999 4678999999999999999 77999999987543100000
Q ss_pred -----------------------------------------------CCCCC------------------CceeccCCCh
Q 015587 73 -----------------------------------------------ESDLE------------------VPIAIRPTSE 87 (404)
Q Consensus 73 -----------------------------------------------~~~l~------------------~~l~LRPt~e 87 (404)
|.+|+ -.-.|||+..
T Consensus 111 ~~~~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETA 190 (599)
T KOG2298|consen 111 DAEERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETA 190 (599)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCcccc
Confidence 01111 3557999988
Q ss_pred hHHHHHHHhhhc-cCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhh--------HHHHHHH------
Q 015587 88 TVMYPYFSKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE--------ADDEVLQ------ 152 (404)
Q Consensus 88 ~~i~~~~~~~i~-s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~--------a~~e~~~------ 152 (404)
.++.--|++... ..+.||+-..|+|+.||+|.+|+.||+|+|||+|.|+|-|-..... ++.++..
T Consensus 191 QG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEHFvdP~~K~h~kF~~V~~~~l~l~~~~~q 270 (599)
T KOG2298|consen 191 QGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEHFVDPLLKSHPKFSLVAAEKLRLFPRDKQ 270 (599)
T ss_pred ccccccHHHHHHhcCCCCcchHHHhchHhhhccCcccCceeEEEeehHHhhccCCCCCCCChhhhhhhhhhhhhcchhhh
Confidence 888777877653 3357999999999999999999899999999999999975222111 1111100
Q ss_pred ----------HHHHH-----------------HHHHHHhCCcc----e----------------------------EeeC
Q 015587 153 ----------ILELY-----------------RRIYEEFLAVP----V----------------------------IKGK 173 (404)
Q Consensus 153 ----------~~~~y-----------------~~~~~~l~~ip----v----------------------------~~g~ 173 (404)
+-++. ..++..+|.-+ + -+|.
T Consensus 271 ~~g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~nEMAHYA~DCWDaEi~tSYGWIEcVG~ 350 (599)
T KOG2298|consen 271 LSGQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMANEMAHYAFDCWDAEIKTSYGWIECVGC 350 (599)
T ss_pred hccchhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhhhhhhhhccccchhhhhccCcEEEeec
Confidence 00100 01112222100 0 0111
Q ss_pred CCC------------------cCc----------------------c---------------------------------
Q 015587 174 KSE------------------LEN----------------------S--------------------------------- 180 (404)
Q Consensus 174 ~~~------------------~ek----------------------f--------------------------------- 180 (404)
.++ +.+ |
T Consensus 351 ADRs~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~g~~~ 430 (599)
T KOG2298|consen 351 ADRAAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDHGLLH 430 (599)
T ss_pred cchhheeeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcCCcEE
Confidence 000 000 0
Q ss_pred --------------------------------cH---HHHHHHHHHc----CCCC--CCCCCCCCCCceEEEEEecCCCC
Q 015587 181 --------------------------------KF---VQIGVMVMVH----GDDK--GLMLPPKVASVQVIVIPVPYKDA 219 (404)
Q Consensus 181 --------------------------------~F---Rli~~Lie~~----~d~~--Gl~lP~~iap~qV~Iipi~~~~~ 219 (404)
.| |++-+|.|+- +|+. -+.+||.+||+++.|.|++.+
T Consensus 431 ~~v~~l~k~~v~i~~~~k~~hV~e~~P~VIEPSfGiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n-- 508 (599)
T KOG2298|consen 431 MYVVNLSKLHVRIKRKTKVPHVREVNPDVIEPSFGIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPN-- 508 (599)
T ss_pred EEEEecccceeeeeeeeeeeeEEeecCCcccccchhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCc--
Confidence 01 9999999852 3333 257899999999999999864
Q ss_pred ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHH
Q 015587 220 DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLV 299 (404)
Q Consensus 220 ~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~ 299 (404)
++..+.+..|.+.|++.||.+.+|+++ .|+|+++..-+..|+|+-|.|....+++++||+|.||+..|..+.++++.
T Consensus 509 --~ef~pv~~~ls~~L~~~gis~kvdds~-~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~ 585 (599)
T KOG2298|consen 509 --LEFRPVCQGLSNELTENGISVKVDDSS-SSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLK 585 (599)
T ss_pred --hhHHHHHHHHHHHHHhCCCeEEecCCC-CcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHH
Confidence 578999999999999999999999998 69999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 015587 300 ERVKELLEE 308 (404)
Q Consensus 300 ~~i~~~l~~ 308 (404)
..|.+++..
T Consensus 586 s~v~~~~~g 594 (599)
T KOG2298|consen 586 SFLIKYISG 594 (599)
T ss_pred HHHHHHhcc
Confidence 888777653
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=232.00 Aligned_cols=150 Identities=17% Similarity=0.116 Sum_probs=135.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec-CCCCCCCceec
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAI 82 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-g~~~l~~~l~L 82 (404)
..+++|+.|++|..+..+++|++.+++.|+++||++|.||+|++.++|.+.+|+ ...++||.|.|+ +| +.++|
T Consensus 3 ~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~--~~~~~~~~f~d~~~g----~~l~L 76 (391)
T PRK12292 3 WQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGA--ILDLRTFKLVDQLSG----RTLGL 76 (391)
T ss_pred CCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCc--cchhhhEEEeecCCC----CEEEE
Confidence 468999999999999999999999999999999999999999999999776664 456899999999 77 89999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
||+.|++++++++..... ...|+|+||+|+|||+| +|+.| |+|||+|.+++++|.+...||+|++.++ .++++
T Consensus 77 RpD~T~~iaR~~a~~~~~-~~~p~r~~y~g~vfR~~-~~~~g--r~ref~Q~g~EiiG~~~~~aDaEvi~l~---~~~l~ 149 (391)
T PRK12292 77 RPDMTAQIARIAATRLAN-RPGPLRLCYAGNVFRAQ-ERGLG--RSREFLQSGVELIGDAGLEADAEVILLL---LEALK 149 (391)
T ss_pred CCCCcHHHHHHHHHhccC-CCCCeEEEeeceeeecC-CCcCC--CccchhccceEEeCCCCchHHHHHHHHH---HHHHH
Confidence 999999999998876432 46899999999999999 57899 9999999999999999999999999988 47777
Q ss_pred HhCC
Q 015587 163 EFLA 166 (404)
Q Consensus 163 ~l~~ 166 (404)
.+|.
T Consensus 150 ~lgl 153 (391)
T PRK12292 150 ALGL 153 (391)
T ss_pred HcCC
Confidence 7763
|
|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=223.69 Aligned_cols=155 Identities=26% Similarity=0.402 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
|+.++++|++++++.+.++||++|.||+|++.++|.+ ++|++.|.++||++.+.++...++.++||||.|+++++++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~ 79 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFK-GGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSG 79 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhh-cCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhc
Confidence 5789999999999999999999999999999999964 779999999999999987222228899999999999999999
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcceEeeCC
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKK 174 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv~~g~~ 174 (404)
++.+|++||+|++|+|+|||+|.++..|+.|+|||+|.|+|++|.+. ++.++...+++++.++++.+| +|+.+...
T Consensus 80 ~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~-~~~~~~~e~~~~~~~~l~~lg-l~~~i~~~ 155 (235)
T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPE-EAEEERREWLELAEEIARELG-LPVRVVVA 155 (235)
T ss_pred cCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHH-HHHHHHHHHHHHHHHHHHHcC-CcEEEEEc
Confidence 99999999999999999999997755688999999999999987663 555666667777789999986 68765444
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-26 Score=217.75 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=129.5
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcC--ceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCcee
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMK--IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G--~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
|++++|++||+|.|..++++|.+++++.+.++| |++|.||++++.++|..+.|++ |.++ +.++
T Consensus 18 y~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~-----------d~~~----~~~~ 82 (254)
T cd00774 18 YGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV-----------ESGG----NLGY 82 (254)
T ss_pred ccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc-----------CCCC----cccc
Confidence 466899999999999999999999999999996 9999999999998886544543 2233 6899
Q ss_pred ccCCChhHHHHHHHhhhccCC-CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
|||+.|+.+...|++...+++ +||++++|+|+|||+|.+|+.||+|+|||+|.|+|+|+ +++++..++..+++++.++
T Consensus 83 Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~-~~~~~~e~~~~v~~~~~~~ 161 (254)
T cd00774 83 LRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFV-DPEKSHPWFDYWADQRLKW 161 (254)
T ss_pred cCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeE-CCCCchHHHHHHHHHHHHH
Confidence 999999888888888777665 99999999999999998877899999999999999976 6668899999999999999
Q ss_pred HHHhCC
Q 015587 161 YEEFLA 166 (404)
Q Consensus 161 ~~~l~~ 166 (404)
|.++|.
T Consensus 162 l~~~G~ 167 (254)
T cd00774 162 LPKFAQ 167 (254)
T ss_pred HHHcCC
Confidence 999874
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=189.57 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=107.0
Q ss_pred HHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCC--CChhHHHHHHHHcCCCE
Q 015587 189 VMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDN--YSPGWKYSHWEMKGVPL 266 (404)
Q Consensus 189 ie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~--~s~g~k~~~ae~~GvP~ 266 (404)
+|++.|+.|++||+.+||+||+|+|+..+ .+++.++|.+|++.|+++|++|.+|++.+ .++|+||++|+++|+|+
T Consensus 10 iE~~~d~~Gl~~P~~iAP~qV~Iipi~~~---~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~ 86 (128)
T cd02426 10 RKKGRQRQVLKLHPCLAPYKVAIDCGKGD---TAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLF 86 (128)
T ss_pred hhcCCCCcEEECCCCCCCeEEEEEeccCC---hHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCE
Confidence 57888999999999999999999999533 26799999999999999999999999874 38999999999999999
Q ss_pred EEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 267 RIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 267 ~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
+|+||++++++|+|++++|+|+++..++++++.+.+.+++.
T Consensus 87 ~I~IG~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 87 TLLISEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred EEEECCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998887653
|
Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase. |
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=218.62 Aligned_cols=192 Identities=15% Similarity=0.201 Sum_probs=162.6
Q ss_pred ccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChh
Q 015587 9 GCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 88 (404)
Q Consensus 9 G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~ 88 (404)
+++.+.+.|.++.+.|.+++.+.+.+.||++|.+|.|.+.++|. .+||++.|.++||.+.+.| ++++|.||+|+
T Consensus 165 ~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~-~sG~~~~f~e~my~i~~~~-----~~~yLi~TaE~ 238 (448)
T PLN02678 165 RGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMA-KCAQLAQFDEELYKVTGEG-----DDKYLIATSEQ 238 (448)
T ss_pred eeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHh-hcCCcccchhcCceecCCC-----Cceeeeccccc
Confidence 35556669999999999999999999999999999999999994 6999999999999996543 46889999999
Q ss_pred HHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhh--HHHHHHHHHHHHHHHHH
Q 015587 89 VMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSE--ADDEVLQILELYRRIYE 162 (404)
Q Consensus 89 ~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~--a~~e~~~~~~~y~~~~~ 162 (404)
+++.++++.+.||++||+|++.+++|||.|.. .++||+|+|||++.|+.. .+++++ +.+++..|++.+.+||.
T Consensus 239 ~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~-~~~pe~~~s~~~~e~~l~~~~~i~~ 317 (448)
T PLN02678 239 PLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITSPNGNESWEMHEEMLKNSEDFYQ 317 (448)
T ss_pred ccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEE-EECCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999985 477999999999999976 666676 99999999999999999
Q ss_pred HhCCcceEe--------eCCCC-----------cCcc-------------------------------cH----------
Q 015587 163 EFLAVPVIK--------GKKSE-----------LENS-------------------------------KF---------- 182 (404)
Q Consensus 163 ~l~~ipv~~--------g~~~~-----------~ekf-------------------------------~F---------- 182 (404)
.|+ +|+.+ |.... ..+| .|
T Consensus 318 ~L~-lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~vHTLNgt~lA 396 (448)
T PLN02678 318 SLG-IPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTA 396 (448)
T ss_pred HcC-CCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCceeEEecCCchhH
Confidence 986 77632 22110 0011 12
Q ss_pred --HHHHHHHHHcCCCCCCCCCCCCCCce
Q 015587 183 --VQIGVMVMVHGDDKGLMLPPKVASVQ 208 (404)
Q Consensus 183 --Rli~~Lie~~~d~~Gl~lP~~iap~q 208 (404)
|+|.+|+|+|....|+.+|..+-|+-
T Consensus 397 ~~R~l~AiLEn~Q~~dgi~iP~vL~pym 424 (448)
T PLN02678 397 TERTLCCILENYQTEDGVRVPEVLQPFM 424 (448)
T ss_pred HHHHHHHHHHhCcCCCCeECChhhhhhc
Confidence 99999999998878888898888863
|
|
| >PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-25 Score=166.65 Aligned_cols=68 Identities=46% Similarity=0.997 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 331 WDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 331 ~~e~~~~~~~~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
||||+++|++||||++||||+.+||++||+++ ||++|||||+... ..+.+|++||+||++|+||||||
T Consensus 1 ~eE~k~~i~~gg~v~~pwcg~~ece~~ike~t-----~at~rciP~~~~~-~~~~~Ci~cgk~a~~~~~farsY 68 (68)
T PF09180_consen 1 YEEFKEAIEKGGFVLVPWCGDEECEEKIKEET-----GATIRCIPFDEQE-PEGGKCIVCGKPAKKWVLFARSY 68 (68)
T ss_dssp HHHHHHHHHTSSEEEEEES-SHHHHHHHHHHH-----S-EEEEEETTSCE-BTT-B-TTT-SB-SCEEEEE-B-
T ss_pred ChHHHHHHhCCCEEEEEccCCHHHHHHHHHhc-----CCcEeEeEccCCC-CCCCeeecCCChhhEEEEEEEEC
Confidence 79999999889999999999999999999999 9999999999322 24457999999999999999999
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B. |
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=209.92 Aligned_cols=149 Identities=12% Similarity=-0.003 Sum_probs=132.6
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec-CCCCCCCceec
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAI 82 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-g~~~l~~~l~L 82 (404)
...++|+.|++|..+..+++|++.+++.|+++||++|.||+||+.++|.+++|. .....||.|.|. +| +.++|
T Consensus 7 ~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~--~~~~~~y~f~D~~~g----~~l~L 80 (392)
T PRK12421 7 WLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQ--DLKLQTFKLIDQLSG----RLMGV 80 (392)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCc--cchhceEEEEcCCCC----cEEEE
Confidence 368999999999999999999999999999999999999999999999766553 344679999998 45 78999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
||+.|+++++++++... ...|+|+||+|+|||++ +++.| |+|||+|.+++++|.+...||+|++.++ .++++
T Consensus 81 RpD~T~~iaR~~a~~~~--~~~p~R~~Y~g~VfR~~-~~~~g--r~rEf~Q~GvEiiG~~~~~aDaEvi~l~---~e~l~ 152 (392)
T PRK12421 81 RADITPQVARIDAHLLN--REGVARLCYAGSVLHTL-PQGLF--GSRTPLQLGAELYGHAGIEADLEIIRLM---LGLLR 152 (392)
T ss_pred CCcCCHHHHHHHHhhcC--CCCceEEEEeeeEEEcC-CCcCC--CcCccceeceEEeCCCCchhHHHHHHHH---HHHHH
Confidence 99999999998876542 26799999999999999 46789 9999999999999999999999999988 47888
Q ss_pred HhCC
Q 015587 163 EFLA 166 (404)
Q Consensus 163 ~l~~ 166 (404)
.+|.
T Consensus 153 ~lgi 156 (392)
T PRK12421 153 NAGV 156 (392)
T ss_pred HcCC
Confidence 8874
|
|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-22 Score=193.82 Aligned_cols=159 Identities=19% Similarity=0.137 Sum_probs=136.7
Q ss_pred EEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHH
Q 015587 11 YIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 90 (404)
Q Consensus 11 ~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i 90 (404)
+|++|.++.+++.|++.+++.|+++||++|.||+|++.++|.+.++ ...++||.|.|.+| +.++|||+.|+.+
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~---~~~~~~~~~~d~~g----~~l~LRpD~T~~i 73 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG---ILNEDLFKLFDSLG----RVLGLRPDMTTPI 73 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC---cchhceEEEECCCC----CEEeecCcCcHHH
Confidence 4799999999999999999999999999999999999999976544 36789999999887 8999999999999
Q ss_pred HHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc--
Q 015587 91 YPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP-- 168 (404)
Q Consensus 91 ~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip-- 168 (404)
+++++...+ ..++|+|++|+|+|||+|. ++.| |.|||+|.++|+++.+...||+|++.++ .++++.++.-+
T Consensus 74 aR~~~~~~~-~~~~p~r~~y~g~VfR~~~-~~~g--r~re~~Q~g~Eiig~~~~~adaEvi~l~---~~~l~~lg~~~~~ 146 (314)
T TIGR00443 74 ARAVSTRLR-DRPLPLRLCYAGNVFRTNE-SGAG--RSREFTQAGVELIGAGGPAADAEVIALL---IEALKALGLKDFK 146 (314)
T ss_pred HHHHHHhcc-cCCCCeEEEEeceEeecCC-CcCC--CcccccccceEEeCCCCchhHHHHHHHH---HHHHHHcCCCCeE
Confidence 999987655 3578999999999999994 5788 9999999999999999999999999888 47888887433
Q ss_pred eEeeCCCCcCcccHHHHHHHHHH
Q 015587 169 VIKGKKSELENSKFVQIGVMVMV 191 (404)
Q Consensus 169 v~~g~~~~~ekf~FRli~~Lie~ 191 (404)
+.+|.. .++.++++.
T Consensus 147 i~l~~~--------~il~~il~~ 161 (314)
T TIGR00443 147 IELGHV--------GLVRALLEE 161 (314)
T ss_pred EEeCcH--------HHHHHHHHH
Confidence 344543 466666663
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=199.63 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=135.5
Q ss_pred CCccEE-eCchHHH-HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCccc-ceEEEEecCCCCCCCceecc
Q 015587 7 ISGCYI-MRPWAIS-IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 7 ~~G~~~-~~P~g~~-i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~-e~~~~~~~g~~~l~~~l~LR 83 (404)
+.|... |+|.+.+ +.+.|++++.+...+.||++|.+|.|...++|. .+||+..|.+ .+|.+. + +.++|-
T Consensus 220 vsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~-~sG~~p~~e~~~~y~ie---~----ed~~Li 291 (502)
T PLN02320 220 VSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVE-KCGFQPRGDNTQVYSID---G----SDQCLI 291 (502)
T ss_pred cCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHH-hcCCCcccccCceeEEC---C----CceEEe
Confidence 568887 5888666 558999999999999999999999999999995 6999877766 777763 2 679999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
||+|.++..++.+.+.+|++||+|+..+++|||+|.. .++||+|+|||.+.|+|+ +++++++++|+..|++...+
T Consensus 292 ~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 292 GTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred ecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 9999888888889899999999999999999999976 467999999999999998 88899999999999999999
Q ss_pred HHHHhCCcce
Q 015587 160 IYEEFLAVPV 169 (404)
Q Consensus 160 ~~~~l~~ipv 169 (404)
+|+.|| +|+
T Consensus 371 i~~~Lg-Lpy 379 (502)
T PLN02320 371 LFTSLG-LHF 379 (502)
T ss_pred HHHHcC-CCe
Confidence 999997 563
|
|
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=185.48 Aligned_cols=156 Identities=12% Similarity=0.039 Sum_probs=130.9
Q ss_pred CccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCcee
Q 015587 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
.+...++|+.|++|..+.+++.|++.+.+.|+++||++|.||+||+.+++.. ...++||.|.|++| +.++
T Consensus 3 ~~~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~------~~~~~~y~~~D~~g----~~l~ 72 (281)
T PRK12293 3 LEHEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI------ADEKELIRFSDEKN----HQIS 72 (281)
T ss_pred CCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc------cchhceEEEECCCC----CEEE
Confidence 4678899999999999999999999999999999999999999999998832 24579999999887 8999
Q ss_pred ccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
|||+.|++++++++...+. ..+|+|+||+|+|||+|. |||+|.+++++|.+.. +|++.++ .+.+
T Consensus 73 LRpD~T~~iaR~~a~~~~~-~~~p~r~~Y~g~vfR~~~---------rEf~Q~GvEliG~~~~---~Evi~la---~~~l 136 (281)
T PRK12293 73 LRADSTLDVVRIVTKRLGR-STEHKKWFYIQPVFRYPS---------NEIYQIGAELIGEEDL---SEILNIA---AEIF 136 (281)
T ss_pred ECCcCCHHHHHHHHHhccc-CCCceeEEEeccEEecCC---------CcccccCeEeeCCCCH---HHHHHHH---HHHH
Confidence 9999999999999876543 368999999999999982 8999999999999875 4777776 5788
Q ss_pred HHhCC-cceEeeCCCCcCcccHHHHHHHHHH
Q 015587 162 EEFLA-VPVIKGKKSELENSKFVQIGVMVMV 191 (404)
Q Consensus 162 ~~l~~-ipv~~g~~~~~ekf~FRli~~Lie~ 191 (404)
+.+|. ..+.+|.. +++..+++.
T Consensus 137 ~~lgl~~~i~ig~~--------~i~~~~l~~ 159 (281)
T PRK12293 137 EELELEPILQISNI--------KIPKLVAEI 159 (281)
T ss_pred HHcCCCCEEEECCH--------HHHHHHHHH
Confidence 88873 12345554 466666664
|
|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-21 Score=182.36 Aligned_cols=212 Identities=15% Similarity=0.125 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
+.++++|++.+++.|+++||++|.||+|++.++|.+.. ++...++||.|.|.+| +.++|||+.|+.++++++..
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~--~~~~~~~~~~~~d~~g----~~l~LRpd~T~~iaR~~a~~ 75 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS--GDEVSKEMYRFKDKGG----RDLALRPDLTAPVARAVAEN 75 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc--cccccceEEEEECCCC----CEEEeCCCCcHHHHHHHHhc
Confidence 56899999999999999999999999999999996543 4567889999999887 89999999999999999987
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc--eEeeCCC
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP--VIKGKKS 175 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip--v~~g~~~ 175 (404)
..+ +++|+|+||+|+|||+|. ++.| |.|||+|.++|+++.+...+|+|++.++ .++++.++.-+ +.+|..
T Consensus 76 ~~~-~~~p~k~~y~g~vfR~e~-~~~g--~~re~~Q~g~Eiig~~~~~~daE~i~l~---~~~l~~lg~~~~~i~l~~~- 147 (261)
T cd00773 76 LLS-LPLPLKLYYIGPVFRYER-PQKG--RYREFYQVGVEIIGSDSPLADAEVIALA---VEILEALGLKDFQIKINHR- 147 (261)
T ss_pred Ccc-CCCCeEEEEEcCEEecCC-CCCC--CccceEEeceeeeCCCChHHHHHHHHHH---HHHHHHcCCCceEEEECCH-
Confidence 666 579999999999999995 4678 9999999999999999999999988887 47888887433 345554
Q ss_pred CcCcccHHHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCC--CEEEEeCCCCCChh
Q 015587 176 ELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAG--IRANSDFRDNYSPG 253 (404)
Q Consensus 176 ~~ekf~FRli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~G--irv~~D~~~~~s~g 253 (404)
.++-+++... | +++.. .-.+.-.-. .+..+.-..+.+.|++.| ..+.+|...-
T Consensus 148 -------~i~~~l~~~~----~--~~~~~---~~~l~~~l~-----~~~l~~l~~l~~~l~~~~~~~~i~~d~~~~---- 202 (261)
T cd00773 148 -------GILDGIAGLL----E--DREEY---IERLIDKLD-----KEALAHLEKLLDYLEALGVDIKYSIDLSLV---- 202 (261)
T ss_pred -------HHHHHHhhcc----C--CCHHH---HHHHHHHhh-----HHHHHHHHHHHHHHHHcCCCceEEEcCccc----
Confidence 4565555432 1 11110 000000000 134566678888888888 4577777542
Q ss_pred HHHHHHHHcCCCEEEEE
Q 015587 254 WKYSHWEMKGVPLRIEI 270 (404)
Q Consensus 254 ~k~~~ae~~GvP~~iiI 270 (404)
..+.+. -|+=+.+..
T Consensus 203 r~~~YY--tG~vF~~~~ 217 (261)
T cd00773 203 RGLDYY--TGIVFEAVA 217 (261)
T ss_pred cCCccc--CceEEEEEE
Confidence 223443 377676655
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=181.79 Aligned_cols=160 Identities=15% Similarity=0.144 Sum_probs=127.5
Q ss_pred ccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChh
Q 015587 9 GCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 88 (404)
Q Consensus 9 G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~ 88 (404)
||.||+|..++.+++|++.+.+.|+++||++|.||+|++.+++...++. ..+++|.|.|++| +.++|||+.|.
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~---~~~~~~~~~D~~G----~~l~LR~D~T~ 73 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGE---DSDNMYRFLDRSG----RVLALRPDLTV 73 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSST---TGGCSEEEECTTS----SEEEE-SSSHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhcccc---chhhhEEEEecCC----cEeccCCCCcH
Confidence 8999999999999999999999999999999999999999999654442 2458999999877 99999999999
Q ss_pred HHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH-HhCCc
Q 015587 89 VMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE-EFLAV 167 (404)
Q Consensus 89 ~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~-~l~~i 167 (404)
.++++++.... ...|.|+||+|+|||++ +++.| |.|||+|.++++++.+...+|+|++.++. ++++ .++.-
T Consensus 74 ~iaR~~a~~~~--~~~~~r~~y~g~vfR~~-~~~~g--~~re~~Q~g~Eiig~~~~~~daEvi~l~~---e~l~~~l~~~ 145 (311)
T PF13393_consen 74 PIARYVARNLN--LPRPKRYYYIGPVFRYE-RPGKG--RPREFYQCGFEIIGSSSLEADAEVIKLAD---EILDRELGLE 145 (311)
T ss_dssp HHHHHHHHCCG--SSSSEEEEEEEEEEEEE-TTTTT--BESEEEEEEEEEESSSSHHHHHHHHHHHH---HHHHHHHTTT
T ss_pred HHHHHHHHhcC--cCCCceEEEEcceeecc-ccCCC--CCceeEEEEEEEECCCCHHHHHHHHHHHH---HHHHhhcCCC
Confidence 99999988643 46899999999999999 55778 99999999999999999999999999884 7775 77632
Q ss_pred c--eEeeCCCCcCcccHHHHHHHHHH
Q 015587 168 P--VIKGKKSELENSKFVQIGVMVMV 191 (404)
Q Consensus 168 p--v~~g~~~~~ekf~FRli~~Lie~ 191 (404)
. +.+|.. +++.++++.
T Consensus 146 ~~~i~i~h~--------~i~~~il~~ 163 (311)
T PF13393_consen 146 NFTIRINHT--------GILDAILEH 163 (311)
T ss_dssp SEEEEEEEH--------HHHHHHHHH
T ss_pred CcEEEEcCc--------hhhHHHHhh
Confidence 3 345544 466666553
|
... |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=177.90 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=142.2
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
+.++++.+.+.+.++.+.|.+++-+...+.||+++.+|.|.+.+.+ ..+|.++.|.++||.+.+ ..++|-||
T Consensus 162 sGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m-~gtgqlpkf~e~~y~v~~-------~~~~LipT 233 (429)
T COG0172 162 SGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESM-FGTGQLPKFEEDLYKVED-------PDLYLIPT 233 (429)
T ss_pred CCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHh-hccCCCCCCcccceEecC-------CCEEEEec
Confidence 4678999999999999999999999999999999999999999998 569999999999999975 46999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC----CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~----~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|.+++.++++.+..-.+||+++.-+++|||+|... ++||+|.+||...|.-. .+.++++..+...|+..-.+++
T Consensus 234 aEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ae~il 312 (429)
T COG0172 234 AEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNAEEVL 312 (429)
T ss_pred chhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHHHHHH
Confidence 999999999999988778999999999999999865 88999999999999887 7889999999999998888999
Q ss_pred HHhCCcce
Q 015587 162 EEFLAVPV 169 (404)
Q Consensus 162 ~~l~~ipv 169 (404)
+.|+ +|+
T Consensus 313 ~~Le-LPy 319 (429)
T COG0172 313 QELE-LPY 319 (429)
T ss_pred HHhC-CCc
Confidence 9885 786
|
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=172.04 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhcc
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRG 100 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s 100 (404)
.+.|.+.+++.|+++||++|.||+|++.++|...+|. ...++||.|.|++| +.++|||+.|+++++++... .
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~--~~~~~~~~f~D~~G----~~l~LRpD~T~piaR~~~~~-~- 78 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDENG----EELCLRPDFTIPVCRRHIAT-A- 78 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCc--hhhcceEEEECCCC----CEEeeCCCCcHHHHHHHHHc-C-
Confidence 3479999999999999999999999999999765553 35678999999988 89999999999999987654 2
Q ss_pred CCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHHHHHHHHHHHhCCcce--EeeCCCCc
Q 015587 101 HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQILELYRRIYEEFLAVPV--IKGKKSEL 177 (404)
Q Consensus 101 ~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~~~y~~~~~~l~~ipv--~~g~~~~~ 177 (404)
...|+|+||+|+|||+| .| |+|||+|.+++++|. +...||+|++.++ .++++.+|..++ .+|..
T Consensus 79 -~~~p~R~~Y~g~VfR~~----~g--r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~---~~~L~~lgl~~~~i~ig~~--- 145 (373)
T PRK12295 79 -GGEPARYAYLGEVFRQR----RD--RASEFLQAGIESFGRADPAAADAEVLALA---LEALAALGPGDLEVRLGDV--- 145 (373)
T ss_pred -CCCCeEEEEEccEEECC----CC--CCCcceEeeEEeeCCCCCccchHHHHHHH---HHHHHHcCCCceEEEeCCH---
Confidence 36799999999999999 46 999999999999997 4578999999988 478888875333 44554
Q ss_pred CcccHHHHHHHHHH
Q 015587 178 ENSKFVQIGVMVMV 191 (404)
Q Consensus 178 ekf~FRli~~Lie~ 191 (404)
+++.++++.
T Consensus 146 -----~il~~ll~~ 154 (373)
T PRK12295 146 -----GLFAALVDA 154 (373)
T ss_pred -----HHHHHHHHH
Confidence 466666664
|
|
| >cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=144.49 Aligned_cols=103 Identities=24% Similarity=0.405 Sum_probs=93.8
Q ss_pred CCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCC
Q 015587 198 LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAN 277 (404)
Q Consensus 198 l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~ 277 (404)
++||+|++|++|+|+|.++ + ++...++.++++.||++|++|++|++ . ++++|+++|++.|+|++++||++|+++
T Consensus 18 ~~~P~~lap~~v~Ii~~~~-~---~~~~~~a~~la~~LR~~gi~v~~d~~-~-sl~kqlk~A~k~g~~~~iiiG~~e~~~ 91 (121)
T cd00858 18 LRLPPALAPIKVAVLPLVK-R---DELVEIAKEISEELRELGFSVKYDDS-G-SIGRRYARQDEIGTPFCVTVDFDTLED 91 (121)
T ss_pred EEcCCCcCCcEEEEEecCC-c---HHHHHHHHHHHHHHHHCCCEEEEeCC-C-CHHHHHHHhHhcCCCEEEEECcCchhC
Confidence 5799999999999999872 1 35678999999999999999999998 4 999999999999999999999999999
Q ss_pred CeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 278 DQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 278 ~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
|+|++++++++++..++++++.+.+.+++
T Consensus 92 ~~v~lk~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 92 GTVTIRERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred CEEEEEECCCCceEEEEHHHHHHHHHHHh
Confidence 99999999999999999999887776654
|
GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. |
| >PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=139.16 Aligned_cols=94 Identities=35% Similarity=0.457 Sum_probs=87.8
Q ss_pred eEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCC
Q 015587 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDN 287 (404)
Q Consensus 208 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~ 287 (404)
||+|+|++.+ .++..++|.++++.|+++|++|++|+++ .++|+||++|++.|+||+|+||++|+++|+|+|++|++
T Consensus 1 qv~Ii~~~~~---~~~~~~~a~~l~~~L~~~gi~v~~d~~~-~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~ 76 (94)
T PF03129_consen 1 QVVIIPVGKK---DEEIIEYAQELANKLRKAGIRVELDDSD-KSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDT 76 (94)
T ss_dssp SEEEEESSCS---HHHHHHHHHHHHHHHHHTTSEEEEESSS-STHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTT
T ss_pred CEEEEEeCCC---cHHHHHHHHHHHHHHHHCCCEEEEECCC-CchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCC
Confidence 7999999864 3578999999999999999999999976 69999999999999999999999999999999999999
Q ss_pred CceeeechhhHHHHHHHH
Q 015587 288 GAKIDLPRGSLVERVKEL 305 (404)
Q Consensus 288 ~~k~~v~~~el~~~i~~~ 305 (404)
+++..++++++++.|++.
T Consensus 77 ~~~~~v~~~el~~~l~~~ 94 (94)
T PF03129_consen 77 GEQETVSLEELIEYLKEN 94 (94)
T ss_dssp TEEEEEECCHHHHHHHHH
T ss_pred CcEEEEEHHHHHHHHhhC
Confidence 999999999999988763
|
This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D .... |
| >cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=132.96 Aligned_cols=93 Identities=28% Similarity=0.432 Sum_probs=85.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEEC
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 285 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r 285 (404)
|+||+|+|+..++ ++...++.++++.||++|++|++|++. .++|+++++|++.|+|++|+||++|+++|+|++++|
T Consensus 1 P~qv~i~p~~~~~---~~~~~~a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~ 76 (94)
T cd00861 1 PFDVVIIPMNMKD---EVQQELAEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVR 76 (94)
T ss_pred CeEEEEEEcCCCc---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEEC
Confidence 7899999998541 467789999999999999999999987 599999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHH
Q 015587 286 DNGAKIDLPRGSLVERV 302 (404)
Q Consensus 286 ~~~~k~~v~~~el~~~i 302 (404)
+++++..++++++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~l 93 (94)
T cd00861 77 KTGEKEEISIDELLEFL 93 (94)
T ss_pred CCCcceEEeHHHHHHhh
Confidence 99999999998886654
|
ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. |
| >PRK14938 Ser-tRNA(Thr) hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=155.61 Aligned_cols=114 Identities=24% Similarity=0.315 Sum_probs=100.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHc
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMK 262 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~ 262 (404)
|++.+++..--...-+.||+|+||.||+|+|++. +...+|.++++.||++|++|++|++. .++|+|+++|++.
T Consensus 251 r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~e------el~e~AlkLA~eLR~aGIrVeiDl~s-rSLgKQiK~AdK~ 323 (387)
T PRK14938 251 LLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKK------DFLDFSIQVAERLRKEGIRVNVDDLD-DSLGNKIRRAGTE 323 (387)
T ss_pred HHHHHHHHHhhhHHhCcCCCccCcceEEEEEeCh------HHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHc
Confidence 8877765533223367999999999999999863 47789999999999999999999987 6999999999999
Q ss_pred CCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015587 263 GVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 263 GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~ 303 (404)
|+|++|+||++|+++|+|++++|++++|..++++++.+.++
T Consensus 324 GaPfvIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lk 364 (387)
T PRK14938 324 WIPFVIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIK 364 (387)
T ss_pred CCCEEEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 99999999999999999999999999999999998876665
|
|
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-17 Score=161.25 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=135.0
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceec
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~L 82 (404)
.+..+.|+.|.+|..+...++|.+.+.+.|.++||+.|.||+|++.+.|.-..|+ +-...+|.++|..| ++++|
T Consensus 2 ~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~g----~~l~L 75 (390)
T COG3705 2 TWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDETG----GRLGL 75 (390)
T ss_pred CCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccch--hhhhhheEEecCCC----CeEEe
Confidence 4578999999999999999999999999999999999999999999999765554 45678999999988 77999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
||+.|+++++.......+ .|.|++|.|+|||-. +...| |..||+|.+++.+|.+...||+|++..+ ...++
T Consensus 76 RpD~T~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~-~~~~g--~~~Ef~QaGiEllG~~~~~ADaEvi~la---~~~L~ 146 (390)
T COG3705 76 RPDFTIPVARIHATLLAG---TPLRLSYAGKVFRAR-EGRHG--RRAEFLQAGIELLGDDSAAADAEVIALA---LAALK 146 (390)
T ss_pred cccccHHHHHHHHHhcCC---CCceeeecchhhhcc-hhccC--cccchhhhhhHHhCCCcchhhHHHHHHH---HHHHH
Confidence 999999999998887654 899999999999998 55668 8889999999999999999999998876 46667
Q ss_pred HhCC--cceEeeC
Q 015587 163 EFLA--VPVIKGK 173 (404)
Q Consensus 163 ~l~~--ipv~~g~ 173 (404)
.+|. +.+.+|.
T Consensus 147 ~~gl~~~~l~LG~ 159 (390)
T COG3705 147 ALGLADLKLELGH 159 (390)
T ss_pred HcCCcCeEEEecc
Confidence 7763 2345553
|
|
| >KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-16 Score=152.84 Aligned_cols=189 Identities=13% Similarity=0.157 Sum_probs=159.3
Q ss_pred EEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHH
Q 015587 11 YIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 90 (404)
Q Consensus 11 ~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i 90 (404)
|.++..+..+-+.|.++--+.+.+.||.++.+|.|.+.+++. +.|....|.+++|.+.|.+ ++.+|--|+|.++
T Consensus 178 Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~-~cg~~~~~d~~~~y~ld~~-----~~~~LiaTaE~pl 251 (455)
T KOG2509|consen 178 YYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQ-KCGQLPRFDEEQYYVLDGG-----DEKYLIATAEQPL 251 (455)
T ss_pred eEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHH-HhccCcCCCcceEEeecCC-----ccceeEeeccchh
Confidence 467899999999999999999999999999999999999995 5888888999999999875 4688999999999
Q ss_pred HHHHHhhhccCCCCCeEEEeeeceeecCC----CCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 91 YPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 91 ~~~~~~~i~s~~~lPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
+.++.+......+||+|+.-.+.|||-|. +.++||+|++||...|... -++++++.++...|++.-.++|..||
T Consensus 252 Aa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it~Pe~S~~~~eEmi~~~eef~qsLg- 329 (455)
T KOG2509|consen 252 AAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-ITGPEDSWEMLEEMINNQEEFYQSLG- 329 (455)
T ss_pred hhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ecCcchhHHHHHHHHHHHHHHHHHhC-
Confidence 99998777666899999999999999998 2467999999999999887 67778888899999988899999997
Q ss_pred cceEe-eCCC------CcCcc----------------------cH---------------------------------HH
Q 015587 167 VPVIK-GKKS------ELENS----------------------KF---------------------------------VQ 184 (404)
Q Consensus 167 ipv~~-g~~~------~~ekf----------------------~F---------------------------------Rl 184 (404)
||+.+ +.-| ...|| +| |+
T Consensus 330 ip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yvHtLN~TacA~~R~ 409 (455)
T KOG2509|consen 330 LPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYVHTLNGTACATPRA 409 (455)
T ss_pred CceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhcccccccCCccceeeecchhhHhhhHH
Confidence 77622 1110 11111 11 99
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCc
Q 015587 185 IGVMVMVHGDDKGLMLPPKVASV 207 (404)
Q Consensus 185 i~~Lie~~~d~~Gl~lP~~iap~ 207 (404)
|.+|+|+|.+.+|+.+|..+-|+
T Consensus 410 l~aiLEnyQ~edGi~VPe~Lr~y 432 (455)
T KOG2509|consen 410 LCAILENYQTEDGIEVPEVLRPY 432 (455)
T ss_pred HHHhHhhccCCCCccCCHhHHhh
Confidence 99999999999999899776664
|
|
| >cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=121.43 Aligned_cols=90 Identities=29% Similarity=0.488 Sum_probs=82.6
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEEC
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 285 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r 285 (404)
|+||+|++.+ +...++|.++++.||+.|++|++|++. .++|+++++|+++|+|++|+||++|+++++++++++
T Consensus 1 p~~v~ii~~~------~~~~~~a~~~~~~Lr~~g~~v~~d~~~-~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~ 73 (91)
T cd00860 1 PVQVVVIPVT------DEHLDYAKEVAKKLSDAGIRVEVDLRN-EKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTR 73 (91)
T ss_pred CeEEEEEeeC------chHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEEC
Confidence 7899999986 356789999999999999999999987 699999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHH
Q 015587 286 DNGAKIDLPRGSLVERV 302 (404)
Q Consensus 286 ~~~~k~~v~~~el~~~i 302 (404)
.++++..++++++.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~ 90 (91)
T cd00860 74 DGGDLGSMSLDEFIEKL 90 (91)
T ss_pred CCCccceEcHHHHHHHh
Confidence 99999999988876554
|
ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. |
| >cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=114.39 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=83.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEEC
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 285 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r 285 (404)
|++|+|+|.+.++ .....++..+++.||+.|++|++|++. .++++++.+|++.|+|++++||++|+++++|+++++
T Consensus 1 p~~v~ii~~~~~~---~~~~~~a~~~~~~Lr~~g~~v~~~~~~-~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~ 76 (94)
T cd00738 1 PIDVAIVPLTDPR---VEAREYAQKLLNALLANGIRVLYDDRE-RKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSR 76 (94)
T ss_pred CeEEEEEECCCCc---HHHHHHHHHHHHHHHHCCCEEEecCCC-cCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEEC
Confidence 6789999986321 357889999999999999999999986 699999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHH
Q 015587 286 DNGAKIDLPRGSLVERV 302 (404)
Q Consensus 286 ~~~~k~~v~~~el~~~i 302 (404)
+++++..++++++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~i 93 (94)
T cd00738 77 DTGESETLHVDELPEFL 93 (94)
T ss_pred CCCceeEEEHHHHHhhc
Confidence 99999999998876543
|
In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). |
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-14 Score=139.69 Aligned_cols=133 Identities=13% Similarity=0.149 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccccc--CcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~--~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
..-++.+++.+++.|..+||++|.||+|++.+.+++ .++.+ .+.++||.+. +.++|||+.++.+.++++
T Consensus 239 ~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~-m~~~~g~eI~n~Iyk~e--------e~lvLRPdLTPsLaR~La 309 (453)
T TIGR02367 239 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLAPNLYNYLR 309 (453)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHh-hcCccCCcccccceEec--------CceEecccCHHHHHHHHH
Confidence 345889999999999999999999999998887754 34332 3567888763 469999999999988876
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
...+ +..+|+|+|++|+|||+| .++.+ |+|||+|.++.++|.+...++.+ .++ ..+++.|| +.+
T Consensus 310 ~N~~-~l~~PqKIFEIGkVFR~E-~~~~t--hlREF~QL~~eIaG~~atfaDle--alL---~e~Lr~LG-Idf 373 (453)
T TIGR02367 310 KLDR-ALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLNFCQMGSGCTRENLE--AII---KDFLDHLE-IDF 373 (453)
T ss_pred Hhhh-hccCCeeEEEEcCeEecC-CCCCC--CcCeEEEEEEEEECCCCCHHHHH--HHH---HHHHHHCC-Cce
Confidence 5432 347899999999999999 45788 99999999999999877766555 344 57888887 444
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=126.96 Aligned_cols=134 Identities=24% Similarity=0.287 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhc
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
+|+.+++.+++.+...||++|.||+|++.+.+.+ .++. .+.+..+.+..+ +..+|||+.++.+..+++++.
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~-~~~~---~~~~~~~~~~~~----~~~~LR~s~~~~l~~~~~~n~- 71 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEK-AGHE---PKDLLPVGAENE----EDLYLRPTLEPGLVRLFVSHI- 71 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHH-cCcc---HhheeeeecCCC----CEEEECCCCcHHHHHHHHhhc-
Confidence 3788999999999999999999999999988753 4432 234555555554 789999999999999998887
Q ss_pred cCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 100 GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 100 s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
+++|+|+|++|+|||.|.. +.++.|++||.|.+++++|.....+ .++..+..++..+++.++.
T Consensus 72 --~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~-~~~~~~~~~~~~~l~~lg~ 134 (211)
T cd00768 72 --RKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEA-SEFEELIELTEELLRALGI 134 (211)
T ss_pred --ccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCCchhH-HHHHHHHHHHHHHHHHcCC
Confidence 5799999999999999964 4545689999999999998765432 3355566666788888873
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=124.62 Aligned_cols=123 Identities=9% Similarity=-0.005 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
.-.++|++.+++.|+++||++|.||+||+.+++. .+++ +......+.+.+.+| +.++|||+.|++++++++...
T Consensus 8 ~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~-~~~~-~~~~~~~~~~~~~~G----r~laLRpD~T~~iAR~~a~~~ 81 (272)
T PRK12294 8 IALKESETAFLKYFNKADYELVDFSVIEKLDWKQ-LNHE-DLQQMGERSFWQHEH----QIYALRNDFTDQLLRYYSMYP 81 (272)
T ss_pred HHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhh-cccc-chhhhheeeeecCCC----CEEEEcCCCCHHHHHHHHhcC
Confidence 3467899999999999999999999999999973 2332 111222345556666 999999999999999886542
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
.-|.|++|+|+|||++ + +|+|.+++++|.+ .+++.|++.++ .+.+.++|
T Consensus 82 ----~~~~Rl~Y~g~VfR~~-~---------~~~Q~GvEliG~~-~~a~~e~l~la---~~~l~~~g 130 (272)
T PRK12294 82 ----TAATKVAYAGLIIRNN-E---------AAVQVGIENYAPS-LANVQQSFKLF---IQFIQQQL 130 (272)
T ss_pred ----CCCceEEEeccEeccC-C---------CcceeceEEECCC-chhHHHHHHHH---HHHHHHhC
Confidence 2467999999999998 3 2799999999966 67777777655 36666664
|
|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=127.66 Aligned_cols=130 Identities=11% Similarity=0.114 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccccc--CcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~--~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
+..|++.+++.|..+||++|.||+|.+.+.|.. .++.. .+.+++|.+. +.++|||+.++.++.+++..
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~-~g~~~g~~i~~~my~id--------eel~LRpsLtPsLlr~la~n- 275 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLAPGLYNYLRKL- 275 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHH-hCCCCcccchhhheeeC--------CceEehhhhHHHHHHHHHhh-
Confidence 678999999999999999999999999988854 55542 3456777752 57999999999988877654
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
.++.++|+|+|++|+|||+|. ++.+ ++|||+|.++.++|.....+ ++..++ .++|+.|| +++
T Consensus 276 ~k~~~~P~RIFEIG~VFR~E~-~g~~--hlrEf~Ql~~~iiGs~~~f~--dL~~ll---eeLL~~LG-I~f 337 (417)
T PRK09537 276 DRILPDPIKIFEIGPCYRKES-DGKE--HLEEFTMVNFCQMGSGCTRE--NLENII---DDFLKHLG-IDY 337 (417)
T ss_pred hhcccCCeeEEEEeceEecCC-CCCC--CcceEEEEEEEEeCCchHHH--HHHHHH---HHHHHHCC-CCc
Confidence 344678999999999999995 4666 99999999999987654433 344444 68899887 454
|
|
| >cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-11 Score=95.88 Aligned_cols=88 Identities=23% Similarity=0.382 Sum_probs=78.5
Q ss_pred eEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCC
Q 015587 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDN 287 (404)
Q Consensus 208 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~ 287 (404)
+|+|+|.+ +....+|.+++..||++|++|+++... .++++++.+|++.|+|+++++|+++..+++++++++++
T Consensus 3 ~v~i~~~~------~~~~~~a~~i~~~Lr~~g~~v~~~~~~-~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~ 75 (91)
T cd00859 3 DVYVVPLG------EGALSEALELAEQLRDAGIKAEIDYGG-RKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLET 75 (91)
T ss_pred cEEEEEcC------hHHHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCC
Confidence 68888876 346678999999999999999999876 58999999999999999999999999999999999999
Q ss_pred CceeeechhhHHHHH
Q 015587 288 GAKIDLPRGSLVERV 302 (404)
Q Consensus 288 ~~k~~v~~~el~~~i 302 (404)
+++..++++++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~ 90 (91)
T cd00859 76 GEQETVALDELVEEL 90 (91)
T ss_pred CCcEEEeHHHHHHHh
Confidence 999889888776544
|
HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=126.73 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=105.5
Q ss_pred CccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccCh-----hhHh--------------hhcccccCc-ccc---
Q 015587 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-----TVLQ--------------KEKDHIEGF-APE--- 64 (404)
Q Consensus 8 ~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~-----~l~~--------------k~~g~~~~f-~~e--- 64 (404)
.| .+++|.....+..+.+.+++.|..+||+++.+|++++. +||. .+.+..... .+.
T Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~ 301 (489)
T PRK04172 223 PP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVER 301 (489)
T ss_pred CC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHH
Confidence 44 78999999999999999999999999999999999965 3332 211100000 011
Q ss_pred ----------------eEEEEecCCCCCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCcccc
Q 015587 65 ----------------VAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRS 128 (404)
Q Consensus 65 ----------------~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~ 128 (404)
+|.+.+.++ +.++|||..|++..++++.+ ...|+|+|++|+|||+|. ++.+ |+
T Consensus 302 v~~~he~g~~~~~~~~~y~~~~~~~----~~~~LR~~~T~~~~r~l~~~----~~~p~rlFeiGrVFR~e~-~d~~--~l 370 (489)
T PRK04172 302 VKEVHEHGGDTGSRGWGYKWDEDIA----KRLVLRTHTTALSARYLASR----PEPPQKYFSIGRVFRPDT-IDAT--HL 370 (489)
T ss_pred HHHHHhccCCCCCccccCCcchhhh----hccccccCChHHHHHHHHhc----CCCCeEEEEecceEcCCC-CCcc--cC
Confidence 344444444 78999999999999988762 367999999999999994 5777 88
Q ss_pred ceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 129 REFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 129 REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
|||+|.++.+++.... ..++..++ ..++..+|.
T Consensus 371 ~Ef~ql~~~i~G~~~~--f~elkg~l---~~ll~~lGi 403 (489)
T PRK04172 371 PEFYQLEGIVMGEDVS--FRDLLGIL---KEFYKRLGF 403 (489)
T ss_pred CchheEEEEEEeCCCC--HHHHHHHH---HHHHHHhCC
Confidence 9999999999887432 44555555 578888874
|
|
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-11 Score=122.18 Aligned_cols=115 Identities=28% Similarity=0.430 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCC-CEEEEeCCCCCChhHHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAG-IRANSDFRDNYSPGWKYSHWEM 261 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~G-irv~~D~~~~~s~g~k~~~ae~ 261 (404)
|+++++++.+.|++|++||..+||+++.|++++.++ .+....+.+++..|...| ..|.+|+++ .++|.++.+|+.
T Consensus 383 r~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~---~~~~~~~~~~~~~l~~~G~~e~~~ddr~-er~g~k~~~a~l 458 (500)
T COG0442 383 RLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKD---FKQAEAAEKLYVELPWCGTVEVLLDDRD-ERPGVKFADADL 458 (500)
T ss_pred hHHHHHHHHhcccccCccccccCcceeEEEEcCchh---HHHHHHhhhHHHHHHhCCchhhhhhhhc-cccCccccCCeE
Confidence 999999999999999999988999999999997542 566777889999999999 999999998 489999999999
Q ss_pred cCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHH
Q 015587 262 KGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERV 302 (404)
Q Consensus 262 ~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i 302 (404)
.|+|+++++|++ .++|.|.++.|.+|++..++...+.+.+
T Consensus 459 iGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 459 IGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEALFARL 498 (500)
T ss_pred ecccceeeeccc-ccCCceeEEecCCCchhhccHHHHHHHh
Confidence 999999999999 8899999999999999888877776654
|
|
| >PRK07080 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-08 Score=95.12 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=108.6
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcC----ceEeccCcccChhhHhhhcccccCcccceEEEEecCCCC------
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMK----IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESD------ 75 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G----~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~------ 75 (404)
.+.|.|-. ..+++.|.+.++..+.++| ++++.+|-+.|.+.|+| ++++++|-..++.+..-.+.+
T Consensus 35 g~~g~ygr----s~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek-~~Y~ksFP~l~~~V~~~~g~~~e~~~l 109 (317)
T PRK07080 35 GVDGLYGR----SGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFER-SGYLKSFPQLAGTVHSFCGNEAEHRRL 109 (317)
T ss_pred CCCccccc----cHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHh-cChhhhCcccceeecCCCCCCHHHHHH
Confidence 45566543 3456777777777777777 99999999999999965 999999998888775422111
Q ss_pred --------------CCCceeccCCChhHHHHHHHhh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec
Q 015587 76 --------------LEVPIAIRPTSETVMYPYFSKW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (404)
Q Consensus 76 --------------l~~~l~LRPt~e~~i~~~~~~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (404)
-...++|.|..|.++|++++.. ... .+- ..+--.|.|||||. ..++-|..+|+|-|.-.+|
T Consensus 110 l~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp-~~g-~~~dv~g~CFR~E~--s~dl~Rl~~F~mrE~V~iG 185 (317)
T PRK07080 110 LACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALP-ADG-RLVDVASYCFRHEP--SLDPARMQLFRMREYVRIG 185 (317)
T ss_pred HHHHHhcCchhhhcCCCcceecccccccchhhhccCcccC-CCC-cEEEeeeeeeccCC--CCCcHHHhheeeeEEEEec
Confidence 1247999999999999988754 221 121 45556899999994 4788999999999999877
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 141 ATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 141 ~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
+++++.+--...++....+.+.|+ +++
T Consensus 186 -t~e~v~~~r~~w~e~~~~l~~~Lg-L~~ 212 (317)
T PRK07080 186 -TPEQIVAFRQSWIERGTAMADALG-LPV 212 (317)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhC-Cce
Confidence 555663333334455556667765 554
|
|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.3e-09 Score=101.75 Aligned_cols=118 Identities=15% Similarity=0.065 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEe-cCCCCCCCceecc--CCChhHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIR--PTSETVMYPY 93 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~-~g~~~l~~~l~LR--Pt~e~~i~~~ 93 (404)
-.+++..|.+.+++.|.+.||.+|.||+|+..... ..+...|..+ |.+.+ .+| +.++|| |+.+ +.++
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~---~~~~~~f~~~-y~~~~~~~~----~~~~L~~SPe~~--~kr~ 73 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVT---DIHLVPFETR-FVGPGASQG----KTLWLMTSPEYH--MKRL 73 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCC---CccCCceeee-eccccccCC----cceEEecCHHHH--HHHH
Confidence 46789999999999999999999999999875543 2233334444 44434 334 788999 6543 3333
Q ss_pred HHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 94 FSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 94 ~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
++ + .+ -|+||+|+|||+|.. +.+ +..||+|.|.+.++.+..+....+..++
T Consensus 74 la----~--~~-~rvf~i~~~FR~e~~-~~~--H~~EFt~lE~y~~~~d~~dlm~~~E~li 124 (306)
T PRK09350 74 LA----A--GS-GPIFQICKSFRNEEA-GRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 124 (306)
T ss_pred hh----c--cc-cceEEecceeecCCC-CCC--CCcHHHhhhhhhhCCCHHHHHHHHHHHH
Confidence 32 2 13 399999999999976 677 9999999999999988777766666655
|
|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-08 Score=94.73 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec-CCCCCCCceeccCCChhHHHHHHHhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
+++..|.+.+++.|.+.||.+|.||+|+... +| +- -+.|.+... +| +.+.|+-..+-..-.+
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~-----~~---~~-~~~f~~~~~~~g----~~~~L~~Spql~~~~~---- 64 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT-----GG---AG-ARPFLVKYNALG----LDYYLRISPQLFKKRL---- 64 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC-----Cc---cc-cceEEeeecCCC----CcEEeecCHHHHHHHH----
Confidence 5788999999999999999999999998642 21 11 145666432 34 7888984433222221
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+. +. |+||+++|||+| .++.+ |++||+|.|++..+.+-.+....+..++
T Consensus 65 ~~~~--~~-~vf~i~~~fR~e-~~~~~--hl~EF~~le~e~~~~~~~dvm~~~e~lv 115 (269)
T cd00669 65 MVGG--LD-RVFEINRNFRNE-DLRAR--HQPEFTMMDLEMAFADYEDVIELTERLV 115 (269)
T ss_pred HhcC--CC-cEEEEecceeCC-CCCCC--cccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 2221 22 999999999999 66888 9999999999998887777666665554
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.5e-08 Score=99.10 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=100.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhh-----hcccccCcccceEEEEec-----------------
Q 015587 14 RPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK-----EKDHIEGFAPEVAWVTKS----------------- 71 (404)
Q Consensus 14 ~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k-----~~g~~~~f~~e~~~~~~~----------------- 71 (404)
.+-...-...+.+.+++.|...||+++.+|-.+-++.|.= -..|-.--..+.|.+.+.
T Consensus 224 ~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk 303 (494)
T PTZ00326 224 GGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVK 303 (494)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHH
Confidence 3444556778899999999999999999875444444421 122211111234555421
Q ss_pred -----CC-----------CCCCCceeccCCChhHHHHHHHhhhccC---CC-CCeEEEeeeceeecCCCCCCCcccccee
Q 015587 72 -----GE-----------SDLEVPIAIRPTSETVMYPYFSKWIRGH---RD-LPLKLNQWCNVVRWEFSNPTPFIRSREF 131 (404)
Q Consensus 72 -----g~-----------~~l~~~l~LRPt~e~~i~~~~~~~i~s~---~~-lPlk~~q~~~vfR~E~~~~~gllR~REF 131 (404)
|+ .+....++||+..|+..++++..+.+.+ .. .|+|++++|+|||+|. +..+ |++||
T Consensus 304 ~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~-~Dat--H~~eF 380 (494)
T PTZ00326 304 KVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNET-LDAT--HLAEF 380 (494)
T ss_pred HHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCC-CCCC--cCcee
Confidence 10 1112579999998888899888765431 12 3999999999999994 6888 99999
Q ss_pred EEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 132 LWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 132 ~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
+|.|+.+++.+. ++++++.++ ..+|+.+|.
T Consensus 381 hQ~Eg~vi~~~~--s~~~L~~~l---~~f~~~lG~ 410 (494)
T PTZ00326 381 HQVEGFVIDRNL--TLGDLIGTI---REFFRRIGI 410 (494)
T ss_pred EEEEEEEEeCCC--CHHHHHHHH---HHHHHhcCC
Confidence 999999988775 566776666 588888874
|
|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=83.66 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec--CCCCCCCceeccCCChhHHHHHHHh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS--GESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~--g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
+++..|.+.+|+.|.+.||.||.||+|....- +.+ .+ |.+... ++ ..+.|+- |.. ++.+
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~---~g~-----~~--f~~~~~~~~~----~~~~L~~-Spq----l~lk 62 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP---EGA-----RD--FLVPSRLHPG----KFYALPQ-SPQ----LFKQ 62 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC---CCC-----CC--ceeccccCCC----ceeeccc-CHH----HHHH
Confidence 57889999999999999999999999975332 111 11 222111 12 3444553 322 2333
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
.+.+. .+ =|+||++++||+|.. +.+ |..||+|.|++.++.+-.+....+..++ ..++..+
T Consensus 63 ~ll~~-g~-~~v~~i~~~fR~e~~-~~~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li---~~i~~~~ 122 (280)
T cd00777 63 LLMVS-GF-DRYFQIARCFRDEDL-RAD--RQPEFTQIDIEMSFVDQEDIMSLIEGLL---KYVFKEV 122 (280)
T ss_pred HHHhc-Cc-CcEEEeccceeCCCC-CCC--ccceeEEeEeeeccCCHHHHHHHHHHHH---HHHHHHH
Confidence 32211 12 389999999999964 667 9999999999999998777777776665 3444443
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.6e-06 Score=81.47 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|.+.||.+|.||+|..... ++ .-+.|.+....+.-.+++..|+...+-.+-.+.+.
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--------~~-~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~ 91 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC--------EG-GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAA 91 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS--------SS-SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc--------Cc-cccccccccchhhhcccceecCcChHHHHhhhccc
Confidence 4678999999999999999999999999977532 12 34567766211111237788888776443333332
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
. + =|+||+|+|||.|...+. .-.-||+|.|.+.++++..+..+.+..++
T Consensus 92 g------~-~~vf~i~~~FR~E~~~~~--rHl~EFtmLE~e~a~~~~~~lm~~~e~li 140 (335)
T PF00152_consen 92 G------L-ERVFEIGPCFRNEESRTR--RHLPEFTMLEWEMAFADYDDLMDLIEELI 140 (335)
T ss_dssp T------H-SEEEEEEEEE-BSSSCBT--TBSSEEEEEEEEEETSSHHHHHHHHHHHH
T ss_pred c------c-hhhhheecceeccCcccc--cchhhhhhhhhccccCcHHHhHHHHHHHH
Confidence 2 2 389999999999965122 14669999999999999888777776665
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.3e-06 Score=82.81 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|.+.||.+|.||+|+.... .++.+.| .+.. -+ +++.|+...+-..-.
T Consensus 23 ~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~----e~~~~~f-----~~~~-~~----~~~yL~~Spql~lk~---- 84 (322)
T cd00776 23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT----EGGAELF-----KVSY-FG----KPAYLAQSPQLYKEM---- 84 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC----CccCCcc-----cccc-CC----CcceecCCHHHHHHH----
Confidence 3678899999999999999999999999987332 1233333 2211 12 667787554422211
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
.+.+ -=|+||+|+|||.|...+.- ..-||+|.|.+.+++ +-.+....+..++
T Consensus 85 l~~~----~~~vf~i~~~FR~E~~~~~r--Hl~EFtmlE~e~~~~~~~~dlm~~~e~ll 137 (322)
T cd00776 85 LIAA----LERVYEIGPVFRAEKSNTRR--HLSEFWMLEAEMAFIEDYNEVMDLIEELI 137 (322)
T ss_pred HHHh----hhhhEEeccccccCCCCcCC--CcceeeccceeeeccCCHHHHHHHHHHHH
Confidence 1222 13889999999999643322 578999999999998 7777766666655
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=76.00 Aligned_cols=135 Identities=16% Similarity=0.108 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccCh-hhHhh---hcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHH
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPY 93 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~-~l~~k---~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~ 93 (404)
..-.+.+.+.+++.|...||+++..|.+++. ..|.+ ...|-.--..+.|++..... ..++..+||+..++...+.
T Consensus 16 ~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~-~~~~~~vLRThts~~~~~~ 94 (247)
T PF01409_consen 16 LHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYS-AEEDYSVLRTHTSPGQLRT 94 (247)
T ss_dssp TSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSB-CECSSEEE-SSTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeecccc-ccchhhhhhhhhhHHHHHH
Confidence 3456788899999999999999999999653 33432 12222111223455533211 0137899999877776666
Q ss_pred HHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh-C
Q 015587 94 FSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF-L 165 (404)
Q Consensus 94 ~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l-~ 165 (404)
+ .+++..|+|++.+|.|||.|.-... .+.+|+|.|+-.++.+-. -.++..++ ..+++.+ |
T Consensus 95 l----~~~~~~p~kif~iG~VyR~D~~D~t---h~~~f~Qleg~~~~~~~~--f~~Lk~~l---~~l~~~lfG 155 (247)
T PF01409_consen 95 L----NKHRPPPIKIFEIGKVYRRDEIDAT---HLPEFHQLEGLVVDKNVT--FEDLKGTL---EELLKELFG 155 (247)
T ss_dssp H----TTTSHSSEEEEEEEEEESSSCSBSS---BESEEEEEEEEEEETTE---HHHHHHHH---HHHHHHHHT
T ss_pred H----HHhcCCCeEEEecCceEecCCcccc---cCccceeEeeEEEecccc--hhHHHHHH---HHHHHHHhh
Confidence 5 4556789999999999999964333 588999999988775432 23344444 5777777 5
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=79.59 Aligned_cols=117 Identities=17% Similarity=0.115 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh-h
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK-W 97 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~-~ 97 (404)
++|..|.+.+++.|.+.||.+|.||+|++...= -++.+ .|.+..-+......+..|+-.++- +.+ -
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~---e~~~~-----~F~~~y~~~~~~~~~~yL~~Spql-----~lk~l 68 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVT---DPHLD-----AFATEFLGPDGEGRPLYLQTSPEY-----AMKRL 68 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCC---CcCCc-----ceeeeccCCCCCCcceeeecCHHH-----HHHHH
Confidence 578999999999999999999999999875320 11222 233322110012256777655442 333 2
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+ .+ =|+|++|+|||+|....+ ..-||+|.|++.++.+-.+....+..++
T Consensus 69 l~~--g~-~rVfeigp~FRaE~~~~r---Hl~EFtmLE~e~~~~d~~d~m~~~e~li 119 (304)
T TIGR00462 69 LAA--GS-GPIFQICKVFRNGERGRR---HNPEFTMLEWYRPGFDYHDLMDEVEALL 119 (304)
T ss_pred Hhc--cC-CCEEEEcCceeCCCCCCC---cccHHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 222 22 489999999999976322 6789999999998887776666555554
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=77.41 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEE-ecCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVT-KSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~-~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-.+++..|.+.+|+.|...||.+|.||+|.+..- .++. +.|.+. +..+ .+..|+-.++-. .+
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----~~~~-----~~f~~~~~~~~----~~~yL~~Spql~----~k 69 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAG----GAAA-----RPFITHHNALD----MDLYLRIAPELY----LK 69 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCCC----Cccc-----eeEEeccCCCC----cceeeccCHHHH----HH
Confidence 3578899999999999999999999999976531 1111 234332 2222 667776444321 12
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
..+.+ .+ =++||+|+|||.|.... -+.-||+|.|.+..+.+..+....+..++
T Consensus 70 ~ll~~--g~-~~vf~i~~~FR~E~~~~---rHl~EFt~le~e~~~~~~~~~m~~~e~li 122 (329)
T cd00775 70 RLIVG--GF-ERVYEIGRNFRNEGIDL---THNPEFTMIEFYEAYADYNDMMDLTEDLF 122 (329)
T ss_pred HHHhc--CC-CcEEEEeccccCCCCCC---CCCCceEEEEEeeecCCHHHHHHHHHHHH
Confidence 22222 22 58999999999996533 36889999999998888777777776665
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=82.96 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec--CCCCCCCceeccCCChhHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS--GESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~--g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-++++..|.+.+|+.|...||.||.||+|.+..- + |-. + |.+... ++ .-++|+ .|.. +|
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~---e-----Gar-~-f~vp~~~~~~----~~y~L~-qSpQ----ly 197 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP---E-----GAR-D-YLVPSRVHKG----EFYALP-QSPQ----LF 197 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC---C-----CCc-c-eeeeeecCCC----ceeecC-CCHH----HH
Confidence 3578999999999999999999999999975321 1 111 1 222221 22 345565 4432 34
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
.+.+.. ..+ =|+||+|+|||+|.. ... |.-||+|.|++.++++.++....+..++ ..+++.+
T Consensus 198 kq~l~v-~G~-ervfqI~~~FR~E~~-~t~--r~pEFT~le~E~af~d~~dvm~~~E~li---~~v~~~v 259 (583)
T TIGR00459 198 KQLLMV-SGV-DRYYQIARCFRDEDL-RAD--RQPEFTQIDMEMSFMTQEDVMELIEKLV---SHVFLEV 259 (583)
T ss_pred HHHHHh-ccc-CcEEEEcceeeCCCC-CCC--CCcccCcceeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 443221 122 389999999999965 446 8899999999999998777766666655 3555554
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.4e-05 Score=78.56 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
.-++++..|.+.+|+.|.+.||.||.||+|..... -|+. +.|.++.-+ .++.|+-..+ ++.
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~~-----~~f~v~~~~-----~~~yL~~Spq-----l~~ 191 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT----EGGT-----ELFPITYFE-----REAFLGQSPQ-----LYK 191 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC----CCCc-----ceeeeEecC-----CcEEECcCHH-----HHH
Confidence 34678899999999999999999999999974321 1222 345554433 5567764443 233
Q ss_pred hh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+. +.+ .+ =|+||+|++||+|...+.= -.-||+|.|++.++++..+....+..++
T Consensus 192 q~li~~--g~-~rVf~i~~~FR~E~~~t~r--Hl~EFt~lE~e~a~~~~~dlm~~~e~li 246 (428)
T TIGR00458 192 QQLMAA--GF-ERVYEIGPIFRAEEHNTHR--HLNEATSIDIEMAFEDHHDVMDILEELV 246 (428)
T ss_pred HHHHhc--cc-CcEEEEecccccCCCCCcc--chheeeEeeeeeccCCHHHHHHHHHHHH
Confidence 32 222 22 4899999999999654321 3469999999999988876666655554
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.1e-05 Score=78.94 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-.+++.++...+|+.+...||.+|+||+|..+. - ||-.+ |-|-.+-.. ++-|+| |-|-. +|++
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkST------P--EGARD--fLVPSRv~~--G~FYAL-PQSPQ----lfKQ 202 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKST------P--EGARD--FLVPSRVHP--GKFYAL-PQSPQ----LFKQ 202 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCccccCC------C--ccccc--cccccccCC--Cceeec-CCCHH----HHHH
Confidence 357889999999999999999999999995422 1 22222 222211110 034444 66543 4555
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
.+.-- .+ =|+|||+.|||+| -.+.- |.=||+|.|+++-+.+.++...-+..++ ..+|++...
T Consensus 203 LLMvs-Gf-dRYyQIarCFRDE-DlRaD--RQPEFTQiD~EmSF~~~edv~~~~E~l~---~~vf~~~~~ 264 (585)
T COG0173 203 LLMVA-GF-DRYYQIARCFRDE-DLRAD--RQPEFTQIDLEMSFVDEEDVMELIEKLL---RYVFKEVKG 264 (585)
T ss_pred HHHHh-cc-cceeeeeeeeccc-ccccc--cCCcceeEeEEeecCCHHHHHHHHHHHH---HHHHHHhcC
Confidence 44321 11 3899999999999 44556 8899999999999999888777666666 577776643
|
|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=4e-05 Score=76.34 Aligned_cols=120 Identities=10% Similarity=-0.005 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccC---cccceEEEEecCCCCCCCceeccCCChhHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG---FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPY 93 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~---f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~ 93 (404)
-++++..|.+.+|+.|.+.||.+|.||+|.+.. ..+..+ -.-..+.+..- | .++.|++..+-
T Consensus 29 il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~-----~~~~~~g~~~~~~~~~~~~~-~----~~~yL~~Spql----- 93 (335)
T PRK06462 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPST-----DPLMGLGSDLPVKQISIDFY-G----VEYYLADSMIL----- 93 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCC-----CCCCCccccCCccccccccC-C----CceeeccCHHH-----
Confidence 467889999999999999999999999997641 111111 00012222211 2 67888765542
Q ss_pred HHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 94 FSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 94 ~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+++.+.+- + =|+||+|++||.|...+.+=-..-||+|.|.+.++++-.+..+.+..++
T Consensus 94 ~k~ll~~g--~-~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv 151 (335)
T PRK06462 94 HKQLALRM--L-GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLI 151 (335)
T ss_pred HHHHHHhh--c-CcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHH
Confidence 23322211 2 4899999999999765511116789999999998988777766666555
|
|
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=74.72 Aligned_cols=129 Identities=15% Similarity=0.035 Sum_probs=93.1
Q ss_pred cEEeCch----HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 10 CYIMRPW----AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 10 ~~~~~P~----g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
...|.|. ....|.+|++.+|..|...||.||+||+|...-.- --|+..|.-+...-.+.+ ...+.|.+.
T Consensus 4 ~~~W~p~~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vt---d~hL~~F~Te~~~~~~~~----~~~l~L~TS 76 (322)
T COG2269 4 TPWWQPSASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVT---DIHLHPFETEFLGPGGAK----GKPLWLHTS 76 (322)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCC---ccceeeeeeEEeccCccc----cceeeeecC
Confidence 3456663 45679999999999999999999999999654332 235666665543322222 378899888
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILE 155 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~ 155 (404)
-|-.+-++.+... -.+||+|.|||++.. |=+--=||+|.|-+.+|++......|+..+++
T Consensus 77 PEy~mKrLLAag~-------~~ifql~kvfRN~E~---G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~ 136 (322)
T COG2269 77 PEYHMKRLLAAGS-------GPIFQLGKVFRNEEM---GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQ 136 (322)
T ss_pred cHHHHHHHHHccC-------CcchhhhHHHhcccc---cccCCCceeEeeeeccCCcHHHHHHHHHHHHH
Confidence 7866665554432 357999999999954 52234599999999999999888888777664
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.9e-05 Score=80.52 Aligned_cols=122 Identities=15% Similarity=0.154 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHh-cCceEeccCcccChhhHhhhcccccCcccceEEEEec-CCCCCCCceeccCCChhHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKK-MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~-~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-++++..|.+.+|+.|.. .||-||.||+|....- + |-. +.+..... .+ ..++|+ .|.. +|
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~---e-----Gar-df~v~~~~~~g----~~y~L~-qSPQ----ly 263 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP---E-----GAR-DYLVPSRVQPG----TFYALP-QSPQ----LF 263 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC---C-----CCc-ccEEeeecCCC----cccccC-CCHH----HH
Confidence 467899999999999986 9999999999975332 1 111 22322221 12 445565 4432 34
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
++.+.. ..+ =|+||+++|||+|.. ... |.-||+|.|++..+.+.++....+..++ ..+++.+
T Consensus 264 kQ~Lm~-~G~-~RvFqIa~~FR~E~~-~t~--RhpEFTqLE~E~sf~d~~dvm~~~E~li---~~v~~~~ 325 (652)
T PLN02903 264 KQMLMV-SGF-DRYYQIARCFRDEDL-RAD--RQPEFTQLDMELAFTPLEDMLKLNEDLI---RQVFKEI 325 (652)
T ss_pred HHHHHh-ccC-CcEEEEehhhccCCC-CCC--cccceeeeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 443221 112 489999999999965 345 8899999999999998777777766665 3555544
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.1e-05 Score=80.81 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec--CCCCCCCceeccCCChhHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS--GESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~--g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-.+++..|.+.+|+.|.+.||-||.||+|.+..- ++-. + |.+..+ .+ ..++|+ +|.. ++
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~--------ega~-~-f~v~~~~~~~----~~~~L~-qSpq----l~ 200 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP--------EGAR-D-YLVPSRVHPG----KFYALP-QSPQ----LF 200 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC--------CCCc-c-ceecccccCC----ceeecC-CCHH----HH
Confidence 3577899999999999999999999999986421 1111 1 322211 12 445554 4432 23
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
.+.+.. ..+ =|+||+|+|||+|.. ... |.-||+|.|++..+.+.++....+..++ ..+++.+
T Consensus 201 kq~l~~-~g~-~rvfqi~~~FR~E~~-~~~--r~~EFt~le~e~af~~~~dvm~~~E~li---~~i~~~~ 262 (588)
T PRK00476 201 KQLLMV-AGF-DRYYQIARCFRDEDL-RAD--RQPEFTQIDIEMSFVTQEDVMALMEGLI---RHVFKEV 262 (588)
T ss_pred HHHHHh-ccc-CceEEEeceeecCCC-CCC--cCcccccceeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 333221 122 489999999999964 445 7779999999999998877777766665 3555544
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.1e-05 Score=77.79 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
.-++++..|.+.+|+.|...||.+|.||+|.+.. .| -+-+.|.+.... ++.++.|+-.++ ++.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~G----a~a~pF~t~~~~---~~~~~yL~~Spq-----l~l 232 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GG----AAARPFITHHNA---LDIDLYLRIAPE-----LYL 232 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CC----ccceeeeecccc---CCCceEeccCHH-----HHH
Confidence 3467899999999999999999999999997532 22 111233321111 125667764433 233
Q ss_pred hhh-ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 96 KWI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 96 ~~i-~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+.+ .+ .+ =|+||+|++||+|...+ -+.-||+|.|++.++++..+....+..++ ..+++.+
T Consensus 233 k~l~v~--g~-~rVfei~~~FR~E~~~~---rH~pEFt~lE~e~a~~d~~d~m~~~E~li---~~i~~~~ 293 (491)
T PRK00484 233 KRLIVG--GF-ERVYEIGRNFRNEGIDT---RHNPEFTMLEFYQAYADYNDMMDLTEELI---RHLAQAV 293 (491)
T ss_pred HHHHhc--cC-CcEEEEecceecCCCCC---CcCCceEEEEEEEecCCHHHHHHHHHHHH---HHHHHHH
Confidence 322 22 12 48999999999997644 37889999999999988777766666555 3444443
|
|
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.9e-05 Score=76.51 Aligned_cols=114 Identities=14% Similarity=0.167 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|.+.||.||.||+|..... .|+. +.|.+..- | ..+.|+-..+ ++.+
T Consensus 135 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~~-----~~f~~~~~-~----~~~~L~~Spq-----l~~q 195 (437)
T PRK05159 135 IFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT----EGGA-----ELFPIDYF-E----KEAYLAQSPQ-----LYKQ 195 (437)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC----CCCc-----ceEeEEec-C----CceEecCCHH-----HHHH
Confidence 4678999999999999999999999999954211 1222 24444322 2 6677865543 2333
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccc-cceeEEeceeeecCC-hhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR-SREFLWQEGHTAFAT-KSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR-~REF~q~e~~~~~~~-~~~a~~e~~~~~ 154 (404)
.+.+ ..+ =|+||++++||+|...+ . | .-||+|.|.+.++.+ ..+....+..++
T Consensus 196 ~l~~-~g~-~rVf~i~~~FR~E~~~t-~--rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv 250 (437)
T PRK05159 196 MMVG-AGF-ERVFEIGPVFRAEEHNT-S--RHLNEYTSIDVEMGFIDDHEDVMDLLENLL 250 (437)
T ss_pred HHHh-cCC-CcEEEEeceeeCCCCCC-c--ccchhhheeeeeeeecccHHHHHHHHHHHH
Confidence 3322 122 48999999999996532 2 3 469999999998987 777766666555
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.9e-05 Score=78.27 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|.+.. .| -+-.-|. ++.. .++.++.||-..+-.+= .
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GG----A~a~PF~-T~~n--~~d~~lYLriSpEL~lK----r 315 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GG----ANARPFI-THHN--DLDLDLYLRIATELPLK----M 315 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Cc----ccceeEE-eccc--CCCcceEEeecHHHHHH----H
Confidence 467899999999999999999999999997741 12 1111122 2111 13477888865543222 2
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+.+ .+ =|+|++|++||+|...++ ..-||+|.|.+.++++..+....+..++
T Consensus 316 Llvg--G~-~rVfeIgp~FRnE~~~~r---HnpEFTmlE~y~ay~dy~dlM~l~E~Li 367 (585)
T PTZ00417 316 LIVG--GI-DKVYEIGKVFRNEGIDNT---HNPEFTSCEFYWAYADFYDLIKWSEDFF 367 (585)
T ss_pred HHHh--CC-CCEEEEcccccCCCCCCC---ccceeeeeeeeeecCCHHHHHHHHHHHH
Confidence 2222 12 389999999999975443 6779999999999988777776666655
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00021 Score=79.65 Aligned_cols=133 Identities=15% Similarity=0.055 Sum_probs=103.3
Q ss_pred EEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHH
Q 015587 11 YIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 90 (404)
Q Consensus 11 ~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i 90 (404)
..+.|.-..+++.+...+-++|+++|+.++.||.+.+..- - ..+..+.+.|-|+|| ..+.|-.+....+
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~-----~--~~~~~~~v~~ld~sG----~~v~Lp~DLr~pf 993 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNA-----C--AYFSRKAVELLDHSG----DVVELPYDLRLPF 993 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccccc-----c--chhccceeeeecCCC----CEEEeeccccchH
Confidence 3566778888999999999999999999999996544221 1 246677888999998 8888888888888
Q ss_pred HHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH-HHHHHHHHH
Q 015587 91 YPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL-ELYRRIYEE 163 (404)
Q Consensus 91 ~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~-~~y~~~~~~ 163 (404)
+++++.+. .+-+|.|.++-|||-+. ...| +|+++++.++++.+..-.++|++.++ ++...+|.+
T Consensus 994 ar~vs~N~----~~~~Kry~i~rVyr~~~-~~hP----~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~ 1058 (1351)
T KOG1035|consen 994 ARYVSRNS----VLSFKRYCISRVYRPAI-HNHP----KECLECDFDIIGPTTSLTEAELLKVIVEITTEILHE 1058 (1351)
T ss_pred HHHhhhch----HHHHHHhhhheeecccc-cCCC----ccccceeeeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 77776552 35689999999999885 3344 78999999999998778899998876 344444443
|
|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=71.55 Aligned_cols=128 Identities=15% Similarity=0.107 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChh-hHhh---hcccccCcccceEEEEecCCCCCCCceeccCCChhHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMY 91 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~-l~~k---~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (404)
-...-...+.+.+++.|...||+++.+|.+++.. .|.+ ..+|-.--..+.|++. +..+||....+...
T Consensus 105 G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~--------~~~lLRThTSp~qi 176 (339)
T PRK00488 105 GSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYID--------DGLLLRTHTSPVQI 176 (339)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEc--------CCceeeccCcHHHH
Confidence 3445678899999999999999999999998654 2321 1222110111355562 56899987666666
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+.+++ ..+|+|++..|.|||.+..... ++.+|+|.|+-+++.+-. -+++..++ ..+++.+
T Consensus 177 r~L~~-----~~~Pirif~~G~VyR~D~~Dat---H~~~FhQleglvvd~~vt--f~dLK~~L---~~fl~~~ 236 (339)
T PRK00488 177 RTMEK-----QKPPIRIIAPGRVYRNDSDDAT---HSPMFHQVEGLVVDKNIS--FADLKGTL---EDFLKAF 236 (339)
T ss_pred HHHHh-----cCCCeEEEEeeeEEEcCCCCcc---cCcceeeEEEEEEeCCCC--HHHHHHHH---HHHHHHH
Confidence 65544 4689999999999999952222 688999999988876532 34555555 3555555
|
|
| >PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=70.42 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=81.5
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccc------cCCCe
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKD------LANDQ 279 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E------~~~~~ 279 (404)
-.+|+|+..+. .-+.....+|++.|+++||++++-.....++...+.++...||+++|+|-.++ -..+.
T Consensus 5 RCDVLV~S~~~-----~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~ 79 (273)
T PF12745_consen 5 RCDVLVCSFGP-----SSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKP 79 (273)
T ss_pred cceEEEEeCCh-----hHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCc
Confidence 46899998874 34558999999999999999999333325899999999999999999998765 23345
Q ss_pred EEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 280 VRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 280 V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
|.||+..++....|+.+||+.++.+.+.+
T Consensus 80 lKVK~l~~~~e~dv~~~eLv~~l~~ei~~ 108 (273)
T PF12745_consen 80 LKVKSLEKKKETDVDRDELVDWLQQEIRE 108 (273)
T ss_pred eEEeccCCCcccccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999877754
|
; GO: 0000049 tRNA binding |
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.6e-05 Score=80.02 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEe-cCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~-~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-++++..|.+.+|+.|...||.+|.||+|....- ++-. +.+.... ..+ .-++|+ .|.. +|+
T Consensus 155 ~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~--------eGAr-~~~~p~~~~~~----~~y~L~-qSPQ----lyk 216 (706)
T PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP--------EGAR-DYLVPSRIHPK----EFYALP-QSPQ----LFK 216 (706)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC--------CCCc-ceEEeeecCCC----cceecC-CCHH----HHH
Confidence 4678999999999999999999999999976321 1111 1111111 122 344554 4432 344
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+... .+ =|+||+++|||.|... .- |.-||+|.|++..+.+.++....+..++
T Consensus 217 q~lm~~-G~-~rvfqI~~~FR~E~~~-t~--r~pEFT~LE~E~af~d~~dvm~l~E~li 270 (706)
T PRK12820 217 QLLMIA-GF-ERYFQLARCFRDEDLR-PN--RQPEFTQLDIEASFIDEEFIFELIEELT 270 (706)
T ss_pred HHHHhc-cC-CcEEEEechhcCCCCC-CC--cCccccccceeeccCCHHHHHHHHHHHH
Confidence 443211 12 3899999999999653 34 8899999999999998887777766665
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=78.72 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|.+.. +| -+-..|.+.+.. ++.++.||-..+ ++.+
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~-----~g----a~a~pF~t~~n~---~~~~~yL~~SPE-----LylK 294 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA-----SG----ANAKSFVTHHNA---NAMDLFLRVAPE-----LHLK 294 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC-----CC----CCccceEeeccc---CCCCEEecCChH-----HHHH
Confidence 467899999999999999999999999995421 11 112234332211 125677775554 2333
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+... .+ =|+|++|++||+|...++ +.-||+|.|.+.++.+..+....+..++
T Consensus 295 rLivg-G~-erVyeIg~~FRnE~~~~r---H~pEFTmlE~y~a~~d~~d~m~l~E~li 347 (659)
T PTZ00385 295 QCIVG-GM-ERIYEIGKVFRNEDADRS---HNPEFTSCEFYAAYHTYEDLMPMTEDIF 347 (659)
T ss_pred HHhhc-cc-CCEEEEeceecCCCCCCC---ccccccceeeeeecCCHHHHHHHHHHHH
Confidence 22211 12 489999999999965432 7889999999999998887776666655
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=77.24 Aligned_cols=116 Identities=12% Similarity=0.103 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| -+-.-|...+. .++..+.||=..+-.. +.
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gG----A~a~pF~t~~n---~~~~~~yL~~Spel~l----K~ 291 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GG----AAARPFVTHHN---DLNMDLYLRIATELHL----KR 291 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CC----ccccceeeecc---cCCcceeeecCHHHHH----HH
Confidence 457889999999999999999999999996532 12 11112322111 1336788875554222 12
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+.+ .+ =|+|++|++||+|...+ -+.-||+|.|.+.++++..+....+..++
T Consensus 292 L~v~--g~-~rVfeIg~~FRnE~~~~---rH~pEFtmlE~y~a~~d~~dlm~~~E~li 343 (553)
T PLN02502 292 LVVG--GF-ERVYEIGRQFRNEGIST---RHNPEFTTCEFYQAYADYNDMMELTEEMV 343 (553)
T ss_pred HHHh--cc-CCEEEEcCeeeCCCCCC---ccccceeehhhhhhcCCHHHHHHHHHHHH
Confidence 2222 12 48999999999997644 37889999999999988777776666665
|
|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=74.70 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----CCCCCCceeccCCChhHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG----ESDLEVPIAIRPTSETVMYP 92 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g----~~~l~~~l~LRPt~e~~i~~ 92 (404)
-++++..|.+.+++.|...||.+|.||+|.... . ++- -+.|.+.... +.-.+.++.|+...+-.. .
T Consensus 132 ~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~-----~---eg~-~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q 201 (450)
T PRK03932 132 VMRIRNTLAQAIHEFFNENGFVWVDTPIITASD-----C---EGA-GELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-E 201 (450)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCceeccC-----C---CCC-CCceEeecccccccccccCCCcccccCHHHHH-H
Confidence 467889999999999999999999999998642 1 121 2356553210 001126677765543221 2
Q ss_pred HHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 93 YFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 93 ~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
++ .+ .+ =|+||++++||.|...+ . --.-||+|.|++.++.+..+....+..++
T Consensus 202 ~l----~~--g~-~rVf~i~~~FR~E~~~t-~-rHl~EFt~lE~e~~~~~~~~~m~~~e~li 254 (450)
T PRK03932 202 AY----AM--AL-GKVYTFGPTFRAENSNT-R-RHLAEFWMIEPEMAFADLEDNMDLAEEML 254 (450)
T ss_pred HH----Hh--cc-CCeEEeeeccccCCCCC-c-cccccccccceEEeccCHHHHHHHHHHHH
Confidence 22 21 22 48999999999995422 2 12469999999999888766655555544
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00013 Score=76.26 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|.+.. .| -+-+.|.+.+. .++.++.||-..+- +.+
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gg----a~a~pF~t~~~---~~~~~~yLriSpEL-----ylK 233 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GG----ANARPFITHHN---ALDMDLYLRIAPEL-----YLK 233 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CC----ccceeEEeecc---cCCCceEEecCHHH-----HHH
Confidence 457889999999999999999999999997531 12 11122333221 12367778766542 333
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
. +.+ .+ =|+|++|++||+|...++ ..-||+|.|++.++++-.+....+..++
T Consensus 234 rlivg--G~-~rVfeIg~~FRnE~~~~r---H~pEFTmlE~y~a~~d~~dlm~~~E~li 286 (496)
T TIGR00499 234 RLIVG--GF-EKVYEIGRNFRNEGVDTT---HNPEFTMIEFYQAYADYEDLMDLTENLF 286 (496)
T ss_pred HHHhC--CC-CceEEEecceecCCCCCc---ccchhheeehhhhcCCHHHHHHHHHHHH
Confidence 2 222 12 489999999999976443 6789999999998988777766666655
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=70.28 Aligned_cols=129 Identities=10% Similarity=0.056 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccCh-hhHhhh---cccccCcccceEEEEecCCCCCCCceeccCCChhHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQKE---KDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYP 92 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~-~l~~k~---~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~ 92 (404)
+..-...+.+.+++.|...||+|+.+|.|++. ..|..- .+|-.--..+.+.+. +.-+||++..+++.+
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~--------d~~vLRtsl~p~ll~ 141 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK--------DRLLLRTHTTAVQLR 141 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec--------CCcceecccHHHHHH
Confidence 44456778888999999999999999999887 344321 111000000234443 457899999888888
Q ss_pred HHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 93 YFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 93 ~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
.++.+.. .|+|+|++|+|||.+.. ... ++.||+|.++-+.+... .-.++..++ ..+++.++
T Consensus 142 ~l~~N~~----~pirlFEiGrVfr~d~~-d~~--~~pef~ql~gl~~~~~~--~f~dLKg~l---e~ll~~l~ 202 (294)
T TIGR00468 142 TMEENEK----PPIRIFSPGRVFRNDTV-DAT--HLPEFHQVEGLVIDKNV--SFTNLKGFL---EEFLKKMF 202 (294)
T ss_pred HHHhcCC----CCceEEEecceEEcCCC-CCc--cCChhhEEEEEEECCCC--CHHHHHHHH---HHHHHHhC
Confidence 7776542 79999999999999842 222 34599999888765221 123334444 46777665
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=76.51 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
.-++++..|.+.+|+.|...||.||.||+|.+. ..|- +-.-|. ++.. .++.++.||=..+ ++.
T Consensus 182 ~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~-----~gGa----~a~pF~-t~~~--~~~~~~yL~~SpE-----Lyl 244 (505)
T PRK12445 182 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGGA----SARPFI-THHN--ALDLDMYLRIAPE-----LYL 244 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec-----CCCC----ccccee-cccc--cCCcceeeecCHH-----HHH
Confidence 346789999999999999999999999999652 1221 111121 1110 1236677765443 233
Q ss_pred hh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+. +.+ .+ =|+|++|++||+|.. +. -..-||+|.|++.++++..+....+..++
T Consensus 245 Krlivg--G~-~rVfeIg~~FRnE~~-~~--rH~pEFTmlE~y~a~~d~~d~m~l~E~li 298 (505)
T PRK12445 245 KRLVVG--GF-ERVFEINRNFRNEGI-SV--RHNPEFTMMELYMAYADYHDLIELTESLF 298 (505)
T ss_pred HHHHhc--cC-CcEEEEehhccCCCC-CC--CcCcccceeeeeeecCCHHHHHHHHHHHH
Confidence 32 222 12 389999999999965 33 27889999999999988777766666655
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00018 Score=75.81 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
++++..|.+.+|+.|...||.+|.||+|..... ++- -+.|.+..- | ..++|+...+ ++.+.
T Consensus 225 frirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~--------egg-a~~F~v~yf-~----~~~~L~qSpq-----l~kq~ 285 (530)
T PLN02850 225 FRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS--------EGG-SAVFRLDYK-G----QPACLAQSPQ-----LHKQM 285 (530)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC--------ccc-cceeeeccC-C----cceecCCCHH-----HHHHH
Confidence 567889999999999999999999999955321 121 135655433 2 6778875443 23333
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
... .++ =|+|++|+|||.|...+.= -.-||+|.|++.... +..+....+..++
T Consensus 286 li~-~g~-~rVfeIgp~FRaE~s~t~R--Hl~EFt~Le~Em~~~~~y~evm~~~E~ll 339 (530)
T PLN02850 286 AIC-GDF-RRVFEIGPVFRAEDSFTHR--HLCEFTGLDLEMEIKEHYSEVLDVVDELF 339 (530)
T ss_pred HHH-hcC-CceEEEecccccCCCCCCc--cchhhccchhhhhhhcCHHHHHHHHHHHH
Confidence 221 133 3899999999999642321 356999999995443 3444444444433
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00022 Score=73.85 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----CCCCCCceeccCCChhHHHHH
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG----ESDLEVPIAIRPTSETVMYPY 93 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g----~~~l~~~l~LRPt~e~~i~~~ 93 (404)
++++..|.+.+++.|...||.+|.||+|....- ++ ..++|.+.... ..-.+.+..|+-..+ +
T Consensus 136 lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~--------eg-~~~~F~v~~~~~~~~~~~~~~~~yL~~Spq-----l 201 (453)
T TIGR00457 136 MRVRNALSQAIHRYFQENGFTWVSPPILTSNDC--------EG-AGELFRVSTDGIDFSQDFFGKEAYLTVSGQ-----L 201 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC--------CC-CCCceEecccccccchhccCCccccccCHH-----H
Confidence 678999999999999999999999999975431 11 12344443100 000125566654432 2
Q ss_pred HHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 94 FSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 94 ~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+.+.+ .+ =|+||++++||.|...+.= -.-||+|.|++.++++..+....+..++
T Consensus 202 ~lq~l~~--g~-~rVf~i~~~FR~E~~~t~r--Hl~EFt~le~e~~~~~~~dvm~~~E~lv 257 (453)
T TIGR00457 202 YLETYAL--AL-SKVYTFGPTFRAEKSNTSR--HLSEFWMIEPEMAFANLNDLLQLAETLI 257 (453)
T ss_pred HHHHHhh--cc-cCceEeeeccccCCCCCCc--CcchhccceeeeecCCHHHHHHHHHHHH
Confidence 3332222 23 3899999999999653321 2469999999998888776666655554
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00084 Score=62.81 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChh-hHhhhcccccCccc--------ceEEEEecCCCCCCCceeccCCChhHHH
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQKEKDHIEGFAP--------EVAWVTKSGESDLEVPIAIRPTSETVMY 91 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~-l~~k~~g~~~~f~~--------e~~~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (404)
.+.+.+.+++.+...||+|+.|+.|.+.+ .+.+ .+ +.+ +.+.+.. ++ .-+|||+..+.+.
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~-~~----~~~~~~~~~~~~~v~l~N----P~--~~~LR~sLlp~LL 71 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDA-LN----IPQDHPARDMQDTFYIND----PA--RLLLRTHTSAVQA 71 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhh-cC----CCCCCcccccCceEEECC----Cc--eEEEeccCcHHHH
Confidence 45677889999999999999999998873 3321 11 111 1122211 11 3689999988887
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
...+.+ ..|+++|++|+|||.+.. ... +..||.+.++...|... ...++..+ ...+++.++
T Consensus 72 ~~l~~N-----~~~~~lFEiG~Vf~~~~~-~~~--~~~E~~~l~~~~~g~~~--df~dlkg~---ve~ll~~l~ 132 (218)
T cd00496 72 RALAKL-----KPPIRIFSIGRVYRNDEI-DAT--HLPEFHQIEGLVVDKGL--TFADLKGT---LEEFAKELF 132 (218)
T ss_pred HHHHhc-----CCCeeEEEEcCeEECCCC-CCC--cCCccEEEEEEEECCCC--CHHHHHHH---HHHHHHHhc
Confidence 776665 569999999999998842 323 34599999999878421 12233333 356666665
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=74.38 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec-------CCCC-------------C-
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-------GESD-------------L- 76 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-------g~~~-------------l- 76 (404)
++++..|...+++.|...||.+|.||+|...+- +| +.|+|.++.. ++.. .
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~--------EG-A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~ 296 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDC--------EG-AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWS 296 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCC--------Cc-cccCceeeeccccccccccccccccccCcccccccc
Confidence 588999999999999999999999999976431 11 2356655431 1000 0
Q ss_pred ----CCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHH
Q 015587 77 ----EVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQ 152 (404)
Q Consensus 77 ----~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~ 152 (404)
+++..|.-.. ..+-.++.. .| =|+|++|++||.|...+.= -+-||+|.|++.++++-++...-+..
T Consensus 297 ~dyF~~~~~LtvS~-QL~~E~~~~------~l-~rVy~igp~FRaE~s~T~R--HL~EF~mlE~E~af~dl~d~m~~~E~ 366 (565)
T PLN02603 297 QDFFGKPAFLTVSG-QLNGETYAT------AL-SDVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLNDDMACATA 366 (565)
T ss_pred hhhhCcceeeccCc-hHHHHHHHh------cc-cceEEEecceeCCCCCCcc--ccccceeeeeeeecCCHHHHHHHHHH
Confidence 0111222111 111111111 22 3789999999999764321 35799999999999876665544444
Q ss_pred HH
Q 015587 153 IL 154 (404)
Q Consensus 153 ~~ 154 (404)
++
T Consensus 367 ~l 368 (565)
T PLN02603 367 YL 368 (565)
T ss_pred HH
Confidence 33
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00035 Score=79.39 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
++++..|.+.+|+.|...||.||.||+|.+.+ .| -+-+.|.+... .++.++.||-..+ ++.+.
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~-----gG----a~a~pF~t~~~---~~~~~~yLriSPE-----LylKr 832 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQQVH-----GG----ANARPFVTHIN---AYDMDLYLRIAPE-----LYLKR 832 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC-----CC----cccceeEeeec---CCCccchhhcChH-----HHHHH
Confidence 56889999999999999999999999996421 12 11123433221 1236677876554 23332
Q ss_pred -hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 98 -IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 98 -i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+ .+ =|+|++|++||+|...++ ..-||+|.|.+.++.+..+....+..++
T Consensus 833 Livg--G~-erVFEIg~~FRnE~~~~r---HnpEFTmLE~y~a~~dy~d~m~l~E~li 884 (1094)
T PRK02983 833 LCVG--GV-ERVFELGRNFRNEGVDAT---HNPEFTLLEAYQAHADYDTMRDLTRELI 884 (1094)
T ss_pred HHhc--cc-CceEEEcceecCCCCCCC---ccccccchhhhhhcCCHHHHHHHHHHHH
Confidence 222 22 489999999999976443 6789999999999988877776666665
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00051 Score=72.70 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPT 49 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~ 49 (404)
-++++..|...+++.|.+.||.+|.||+|...+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 468899999999999999999999999997654
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00094 Score=67.91 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++|+..|...+++.|.+.||.+|.||++..... +. +.++|.++--+. +-.|-- |. .+++.
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~---EG------g~elF~v~yf~~-----~a~Ltq-S~----QLyke 193 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT---EG------GGELFKVDYFDK-----EAYLTQ-SP----QLYKE 193 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC---CC------CceeEEEeecCc-----ceEEec-CH----HHHHH
Confidence 4688999999999999999999999999987653 11 236777765432 222211 11 22222
Q ss_pred hhc-cCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~-s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
-.. +. =|+|.+|++||.|.+.|+= -+-||+|.|.+.++++..+..+-+..++
T Consensus 194 ~~~~al----~rVf~igP~FRAE~s~T~R--HL~EF~~ld~Emaf~~~~d~m~l~E~~i 246 (435)
T COG0017 194 ALAAAL----ERVFTIGPTFRAEKSNTRR--HLSEFWMLDPEMAFADLNDVMDLAEELI 246 (435)
T ss_pred HHHHHh----CceEEecCceecCCCCCcc--hhhhHheecceeccCcHHHHHHHHHHHH
Confidence 221 11 2899999999999876663 4899999999999998665544444443
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0013 Score=69.78 Aligned_cols=118 Identities=17% Similarity=0.101 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCC---------------------
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESD--------------------- 75 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~--------------------- 75 (404)
-++++..|...+++.|...||.+|.||+|...+- +| +.|||.|+...+.+
T Consensus 214 vlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~--------EG-a~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~ 284 (586)
T PTZ00425 214 VIRIRNALAIATHLFFQSRGFLYIHTPLITTSDC--------EG-GGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKRED 284 (586)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC--------CC-CcceEEeeecccccccccccccccccccccccccc
Confidence 4688999999999999999999999999965442 11 23667664321000
Q ss_pred -------------------------------------CCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecC
Q 015587 76 -------------------------------------LEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWE 118 (404)
Q Consensus 76 -------------------------------------l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E 118 (404)
.+.+..|.-.+ .++...+.. .+ =|+|+++++||.|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~-----QLylE~~~~--g~-~rVf~i~p~FRaE 356 (586)
T PTZ00425 285 ILNTCNANNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSG-----QLSLENLCS--SM-GDVYTFGPTFRAE 356 (586)
T ss_pred ccccccccccccccccccccccccccccccccccccccCcceEEEcCc-----hHHHHHHHh--cc-CCEEEEeceEeCC
Confidence 00111111111 122222211 12 3899999999999
Q ss_pred CCCCCCccc-cceeEEeceeeecCChhhHHHHHHHHH
Q 015587 119 FSNPTPFIR-SREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 119 ~~~~~gllR-~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
...+ . | .-||+|.|++.++.+.++....+..++
T Consensus 357 ~s~t-~--RHL~EFt~lE~E~af~d~~d~m~~~E~li 390 (586)
T PTZ00425 357 NSHT-S--RHLAEFWMIEPEIAFADLYDNMELAESYI 390 (586)
T ss_pred CCCC-C--CCCcccceEEEEEecCCHHHHHHHHHHHH
Confidence 6532 3 4 469999999998887666544444443
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0013 Score=70.04 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=35.5
Q ss_pred eEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 106 LKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 106 lk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
=|+|++|++||.|...|.= .+-||+|.|++.++++-.+...-+..++
T Consensus 390 ~rVYeIgP~FRAE~s~T~R--HL~EFtmlE~Emaf~d~~dvM~l~E~lI 436 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSAR--HLAEMWMVEVEMAFSELEDAMNCAEDYF 436 (633)
T ss_pred CceEEEccceecCCCCCCc--ccccccceeeeehhcCHHHHHHHHHHHH
Confidence 4899999999999765432 4889999999998887665544444443
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0023 Score=67.72 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|..... -|+.+. |.+..- + ..++|+-..+ ++++
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~----egga~~-----F~v~yf-~----~~~~L~qSpq-----l~kq 272 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS----EGGANV-----FKLEYF-N----RFAYLAQSPQ-----LYKQ 272 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC----Cccccc-----cccccC-C----CCeecCCCHH-----HHHH
Confidence 4677889999999999999999999999976441 122222 333222 2 5677754332 2334
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec-CChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF-ATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~-~~~~~a~~e~~~~~ 154 (404)
.... .++ =|+|++|+|||.|...+.= -.-||+|.|.+..+ .+..+....+..++
T Consensus 273 ~li~-~g~-~rVfeI~p~FRaE~s~T~R--Hl~EFt~Le~E~~~~~~y~evm~~~e~l~ 327 (550)
T PTZ00401 273 MVLQ-GDV-PRVFEVGPVFRSENSNTHR--HLTEFVGLDVEMRINEHYYEVLDLAESLF 327 (550)
T ss_pred HHHh-cCC-CCEEEEeCeEeCCCCCCCC--CccchhhhhhhhHhcCCHHHHHHHHHHHH
Confidence 3322 123 4899999999999764321 34699999998654 44455555554444
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0073 Score=62.53 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhcCceEec-cCcccChhhHh-----hhcccccCcccceEEEEec--------------------
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCY-FPLFVSPTVLQ-----KEKDHIEGFAPEVAWVTKS-------------------- 71 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~-~P~l~~~~l~~-----k~~g~~~~f~~e~~~~~~~-------------------- 71 (404)
..-...+.+.+++.|...||+++. .|.+++ +.|. --..|-.--..+.|++.+.
T Consensus 220 ~HPl~~~~~ei~~if~~mGF~e~~~g~~ves-~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~ 298 (492)
T PLN02853 220 LHPLLKVRQQFRKIFLQMGFEEMPTNNFVES-SFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHES 298 (492)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEecCCCCeec-hhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhc
Confidence 345667888999999999999994 566554 3331 1122221111235666521
Q ss_pred CC-----------CCCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec
Q 015587 72 GE-----------SDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (404)
Q Consensus 72 g~-----------~~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (404)
|+ .+..+.++||.-.++.-.+++.+..+. ...|+|++.+|.|||+|.-... .+-||||.|+-+++
T Consensus 299 G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~-~~~p~k~fsigrVfR~d~iDat---H~~eFhQ~EG~vvd 374 (492)
T PLN02853 299 GGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQK-GFKPKRYFSIDRVFRNEAVDRT---HLAEFHQVEGLVCD 374 (492)
T ss_pred CCCCccccccccccchhcccccCCCCCHHHHHHHHHhhcc-CCCCcEEEeccceecCCCCCcc---cCccceeEEEEEEe
Confidence 10 011257889975555556666554322 2469999999999999963222 68899999999986
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 141 ATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 141 ~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
.+-- ...++. +...+|+.+|.
T Consensus 375 ~~~t--~~~L~g---~l~~f~~~lg~ 395 (492)
T PLN02853 375 RGLT--LGDLIG---VLEDFFSRLGM 395 (492)
T ss_pred CCCC--HHHHHH---HHHHHHHHcCC
Confidence 5422 223334 44688888765
|
|
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0068 Score=59.90 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=86.7
Q ss_pred EeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHh-----hhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 12 IMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQ-----KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 12 ~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~-----k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
...|-+......+.+.+++.|...||+++..|.++. +.|. .-..|-.---.+-|++.+.. +.++||=-.
T Consensus 104 ~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTFy~~~~~-----~~~lLRTHT 177 (335)
T COG0016 104 RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTFYLKDDR-----EKLLLRTHT 177 (335)
T ss_pred cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceEEEcCCC-----CceeecccC
Confidence 344556677888999999999999999999996553 3332 11222211112356676421 257888644
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
++.-.+.+.+.. .-|+|++..|.|||.|.-... .+-+|+|.|+-+++.+-- -+.+..++ ..+++.++
T Consensus 178 s~vq~R~l~~~~----~~P~k~~~~grvyR~D~~DaT---Hs~~FhQiEGlvvd~~~s--~~~Lkg~L---~~f~~~~f 244 (335)
T COG0016 178 SPVQARTLAENA----KIPIKIFSPGRVYRNDTVDAT---HSPEFHQIEGLVVDKNIS--FADLKGTL---EEFAKKFF 244 (335)
T ss_pred cHhhHHHHHhCC----CCCceEecccceecCCCCCcc---cchheeeeEEEEEeCCcc--HHHHHHHH---HHHHHHhc
Confidence 444455554432 239999999999999954333 578999999977654432 33444444 56666665
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0039 Score=63.84 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=56.4
Q ss_pred CceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 78 VPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 78 ~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
..+.||+..+++..+.+... ..+..+|+|++.+|.|||.|...-.- ++++|+|.++-+++.+- .-.++..++
T Consensus 181 ~~~lLRTHTTpgqirtL~~L-~~~~~~PiRIFsIGRVfRrD~~~DaT--Hl~eFhQlEGLVVdedV--Sf~DLKgvL--- 252 (533)
T TIGR00470 181 TTLTLRSHMTSGWFITLSSI-IDKRKLPLKLFSIDRCFRREQREDRS--HLMTYHSASCVVVDEEV--SVDDGKAVA--- 252 (533)
T ss_pred hCcccccCChhHHHHHHHHH-hhcCCCCeEEEeeeeEEecCCCCCCc--cCceeeeEEEEEECCCC--CHHHHHHHH---
Confidence 46778887666555555442 22457999999999999999421212 68999999999877643 334555555
Q ss_pred HHHHHHhCCc
Q 015587 158 RRIYEEFLAV 167 (404)
Q Consensus 158 ~~~~~~l~~i 167 (404)
..+++.+|..
T Consensus 253 e~LLr~LG~~ 262 (533)
T TIGR00470 253 EGLLAQFGFT 262 (533)
T ss_pred HHHHHHhCCc
Confidence 4777777643
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0059 Score=62.33 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHH-HhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~-~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-.+++..+...+|+.+ ++.||.+|.||+| |.+.-|. +.|...-+.... -.++--|-|-.. |+
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtL-----FkrTPgG----A~EFvVPtr~~~----g~FYaLpQSPQQ----fK 239 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTL-----FKRTPGG----AREFVVPTRTPR----GKFYALPQSPQQ----FK 239 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcch-----hccCCCc----cceeecccCCCC----CceeecCCCHHH----HH
Confidence 4577888888999988 5689999999998 4332221 222221121110 113333555433 34
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+..-. ==|+||++.|||+|-. +.- |.=||+|.|++..+.+.++...-+..++
T Consensus 240 QlLMvsG--idrYyQiARCfRDEdl-R~D--RQPEFTQvD~EMsF~~~~dim~liEdll 293 (628)
T KOG2411|consen 240 QLLMVSG--IDRYYQIARCFRDEDL-RAD--RQPEFTQVDMEMSFTDQEDIMKLIEDLL 293 (628)
T ss_pred HHHHHhc--hhhHHhHHhhhccccc-Ccc--cCCcceeeeeEEeccCHHHHHHHHHHHH
Confidence 4333211 1378999999999943 335 8899999999999998866544444443
|
|
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.018 Score=57.44 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC----hhHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS----ETVMY 91 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~----e~~i~ 91 (404)
.-++++..+.......|...+|..|.||++-..+= +|. -|||.|+-.-+ -+..+-=||+. ...+.
T Consensus 130 av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC--------EGa-GE~F~vtt~~d--~~~~fFg~p~fLTVSgQLhl 198 (446)
T KOG0554|consen 130 AVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC--------EGA-GEVFQVTTLTD--YSKDFFGRPAFLTVSGQLHL 198 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC--------CCC-cceEEEEecCc--ccccccCCceEEEEeceehH
Confidence 35789999999999999999999999999976432 233 37888865321 12445555642 23333
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCCh
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 143 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~ 143 (404)
..++--+ -+.|-+|+.||.|.+.+.- -+-||+|.|+++++++.
T Consensus 199 E~~a~~L-------srvyTfgP~FRAEnS~tsR--HLAEFwMlEaE~AF~~s 241 (446)
T KOG0554|consen 199 EAMACAL-------SRVYTFGPTFRAENSHTSR--HLAEFWMLEAELAFAES 241 (446)
T ss_pred HHHHhhh-------cceEeeccceecccCCchh--HHhhhhhhhhHHHHHHH
Confidence 3332221 3789999999999764433 57799999999988763
|
|
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0066 Score=61.58 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-+.++.+|.+++|+.+...||-||+||+|.. .+|. .-++ -| +|+..+ |+-.|.||=..|--+-.++..
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~------iaGG--A~Ak-PF-IT~hnd--ldm~LylRiAPEL~lK~LvVG 291 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNM------IAGG--ATAK-PF-ITHHND--LDMDLYLRIAPELYLKMLVVG 291 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhcc------ccCc--cccC-ce-eecccc--cCcceeeeechHHHHHHHHhc
Confidence 3677889999999999999999999999843 1221 1111 12 344333 557788886655333333222
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+ -|+|.+|..||+|--. +-..=||+-+|.+.+-++-.+...-...++
T Consensus 292 Gl-------drVYEIGr~FRNEGID---lTHNPEFTTcEfY~AYady~dlm~~TE~l~ 339 (560)
T KOG1885|consen 292 GL-------DRVYEIGRQFRNEGID---LTHNPEFTTCEFYMAYADYEDLMDMTEELL 339 (560)
T ss_pred cH-------HHHHHHHHHhhhcCcc---cccCCCcchHHHHHHHhhHHHHHHHHHHHH
Confidence 21 3899999999999432 225668999998887777666554444444
|
|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.095 Score=55.86 Aligned_cols=128 Identities=18% Similarity=0.168 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhh-HhhhcccccCccc--ceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAP--EVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l-~~k~~g~~~~f~~--e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-.+.+.+.+++.+...||+|+.|..|.+.+. +.+ .+ +.+ +...+..--. ++.-+||++.-+++....+.
T Consensus 360 ~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~----~~~~~~~i~l~NPls---~e~svLRtsLlpgLL~~~~~ 431 (552)
T PRK09616 360 PIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MN----LEPEEDYVEVLNPIS---EDYTVVRTSLLPSLLEFLSN 431 (552)
T ss_pred hHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hC----CCCCCCeEEEcCCCc---cchheEeccchHHHHHHHHh
Confidence 3566778889999999999999999998865 532 21 222 2344433111 26678999999999998888
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
+. ++..|+++|++|.||+.+..... ..+|+.+..+-+.|.. + .+..+..+...++..+|
T Consensus 432 N~--~~~~~~~lFEiG~Vf~~~~~~~~---~~~e~~~l~~~~~g~~---~--df~dlKg~ve~ll~~lg 490 (552)
T PRK09616 432 NK--HREYPQKIFEIGDVVLIDESTET---GTRTERKLAAAIAHSE---A--SFTEIKSVVQALLRELG 490 (552)
T ss_pred cc--CCCCCeeEEEeeEEEecCCcccc---CcchhhEEEEEEECCC---C--CHHHHHHHHHHHHHHcC
Confidence 77 34679999999999987632111 2357777776666641 1 12233333356666665
|
|
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.021 Score=57.14 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
++|..-|...+|+.+...||.+|-||-|+..+- +. +..+|.+.--++. --++=.| .++++.
T Consensus 228 Friq~gvc~~FRe~L~~kgF~EIhTpKli~asS---EG------GanvF~v~Yfk~~---A~LAQSP-------QLyKQM 288 (533)
T KOG0556|consen 228 FRIQAGVCFAFREYLRSKGFVEIHTPKLIGASS---EG------GANVFRVSYFKQK---AYLAQSP-------QLYKQM 288 (533)
T ss_pred eehHHHHHHHHHHHHHhcCcceecccccccccC---CC------CceeEEEEeccCc---chhhcCh-------HHHHHH
Confidence 345667888999999999999999999976442 11 2457887765541 1122222 123332
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCC
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 142 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~ 142 (404)
..- .|+ =|+|.+|+|||.|-+.+.- ...||.-.|++.++..
T Consensus 289 aI~-gdf-~rVyeIGpVfRAEdSnthR--hltEFvGLD~EMaf~~ 329 (533)
T KOG0556|consen 289 AIC-GDF-ERVYEIGPVFRAEDSNTHR--HLTEFVGLDLEMAFNE 329 (533)
T ss_pred HHh-cch-hheeeecceeeccccchhh--hhHHhhCcchhhHHHH
Confidence 211 233 4899999999999887765 5788988887775543
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.054 Score=55.94 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
+..+-+|.+.+|+.+...||-||.||+|.+- .| |-+-.-| +|+.. .|+-++.||=..|- +.++.
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i------~G---GA~ArPF-~ThhN--ald~dlyLRIApEL----yLKRl 243 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPI------PG---GAAARPF-ITHHN--ALDMDLYLRIAPEL----YLKRL 243 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEecccccccc------CC---Ccccccc-eeeec--ccCCceEEeeccHH----HHHHH
Confidence 4567789999999999999999999999652 22 1111122 23322 24577999977663 33444
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.. -+ =|+|.+|.+||+|--..+ -.=||++.|.+.+.++..+..+-...++
T Consensus 244 iVG--G~-erVfEIgr~FRNEGid~t---HNPEFTmlE~Y~AYaDy~D~m~ltE~Li 294 (502)
T COG1190 244 IVG--GF-ERVFEIGRNFRNEGIDTT---HNPEFTMLEFYQAYADYEDLMDLTEELI 294 (502)
T ss_pred Hhc--Cc-hhheeeccccccCCCccc---cCcchhhHHHHHHHhHHHHHHHHHHHHH
Confidence 433 22 389999999999943222 3459999999987777666544444433
|
|
| >PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.074 Score=39.11 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=32.8
Q ss_pred HHHHHHHhcC-CCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 331 WDEFVEALGQ-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 331 ~~e~~~~~~~-~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
.|+++++|.+ +|++++|+..+. .-++++++. .|+++|. | ....+.|.-+||+|
T Consensus 15 ~e~iK~~L~ekrgviLiPy~e~i-YnEEfEe~i-----dAsvLG~------------t---~y~G~kYIsiArTY 68 (68)
T PF09181_consen 15 IEKIKEILSEKRGVILIPYDESI-YNEEFEEKI-----DASVLGE------------T---EYEGKKYISIARTY 68 (68)
T ss_dssp --HHHHHCTTT-SEEEEE--GGG--SHHHHHHH-----SS-EEEE------------E---ESSSSEEEEEE-B-
T ss_pred HHHHHHHHHhcCCEEEEeCcHHH-hhHHHHhhh-----CceEeee------------E---EecCcEEEEEEeeC
Confidence 3567888864 799999996554 345678888 9999985 1 23446788899988
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found predominantly found in prolyl-tRNA synthetases from archaeal Methanococci species. It contains a zinc binding site, and adopts a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif []. ; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ8_C. |
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.19 Score=46.13 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCccc-ceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhcc
Q 015587 22 ETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRG 100 (404)
Q Consensus 22 ~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~-e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s 100 (404)
+.+.+.+++.+...||.|+.|..|.+.+.+.. . ++.. +...+..-=. ++.=+|||+.-+.+....+.+...
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~----~~~~~~~i~l~NPis---~e~~~lR~sLlp~LL~~~~~N~~~ 74 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-F----DGGLDEAVELSNPLS---EEYSVLRTSLLPGLLDALARNLNR 74 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-c----cCCCCCeEEEcCCCc---hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677789999999999999999998865532 1 1111 2334432111 255679999888888888877643
Q ss_pred CCCCCeEEEeeeceeecC
Q 015587 101 HRDLPLKLNQWCNVVRWE 118 (404)
Q Consensus 101 ~~~lPlk~~q~~~vfR~E 118 (404)
...|+++|++|.||..+
T Consensus 75 -~~~~~~lFEiG~vf~~~ 91 (198)
T cd00769 75 -KNKPLRLFEIGRVFLKD 91 (198)
T ss_pred -CCCCEeEEEeEeEEecC
Confidence 45899999999999654
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.5 Score=44.76 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhc---CceEec--cCcccChhhHh---hhcccccCcccceEEEEecCCCCCCCceeccCCChhHHH
Q 015587 20 IWETMQKFFDAEIKKM---KIQNCY--FPLFVSPTVLQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMY 91 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~---G~~~i~--~P~l~~~~l~~---k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (404)
-...+.+.+.+.|... ||+.+. .|+.....-|. --.+|-.--..+-|++. ...+||--.++...
T Consensus 69 Pl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~--------~~~lLRTHTSa~q~ 140 (402)
T PLN02788 69 PLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD--------AQTVLRCHTSAHQA 140 (402)
T ss_pred hHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec--------CCccccCCCcHHHH
Confidence 3455677777777776 999998 45443322221 11223211122456663 45888874444455
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (404)
+++.+ ..| ++...|.|||.|.-... .+-+|||.|+-.++
T Consensus 141 ~~l~~------~~~-~~~~~g~VyRrD~iD~t---H~p~FhQ~EG~~v~ 179 (402)
T PLN02788 141 ELLRA------GHT-HFLVTGDVYRRDSIDAT---HYPVFHQMEGVRVF 179 (402)
T ss_pred HHHHh------CCC-cEEEEeeEeecCCCCcc---cCccceeEEEEEEe
Confidence 55553 124 89999999999963222 57799999999876
|
|
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.33 Score=48.24 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCccc---------ceEEEEe--------------------c
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP---------EVAWVTK--------------------S 71 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~---------e~~~~~~--------------------~ 71 (404)
..+|.+.+|.+|-..||.|+-|--++-+++|.= + .-|.| +.|.+.+ .
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNF--D--ALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~ 289 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNF--D--ALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQ 289 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccc--h--hhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhc
Confidence 456888899999999999998888877776621 1 11222 2343333 1
Q ss_pred CCC-----------CCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec
Q 015587 72 GES-----------DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (404)
Q Consensus 72 g~~-----------~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (404)
|+. +..+..+||--+|.+-++|.-+..+. .--|-|+|.|-.|||+|+- -.- .+-||+|.|+-+++
T Consensus 290 G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~-~f~p~K~FSIDrVFRNEtv-DaT--HLAEFHQVEGviad 365 (483)
T KOG2784|consen 290 GGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKK-GFKPAKYFSIDRVFRNETV-DAT--HLAEFHQVEGVIAD 365 (483)
T ss_pred CCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhC-CCCcccccchhhhhhcccc-chH--HHHHHhhhceeeec
Confidence 210 01257788865555555555444332 2459999999999999964 223 67899999999866
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 141 ATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 141 ~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
..-- ...++-+ ...+|..+|+
T Consensus 366 ~glt--LgdLig~---l~~ff~~lg~ 386 (483)
T KOG2784|consen 366 KGLT--LGDLIGI---LMEFFTKLGA 386 (483)
T ss_pred CCCc--HHHHHHH---HHHHHhccCC
Confidence 5432 2333444 4688888775
|
|
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=89.94 E-value=2.5 Score=45.08 Aligned_cols=129 Identities=14% Similarity=0.064 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhH-hhhcccccCccc-ceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVL-QKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~-~k~~g~~~~f~~-e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
.-.+.+.+.+++.+...||+|+.|-.|.+.+.+ .+ - ++.+ +...+..--. ++.=+||++.-+.+....+.
T Consensus 362 ~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~-~----~~~~~~~v~l~NPis---~e~s~lR~SLlp~LL~~~~~ 433 (551)
T TIGR00471 362 KPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR-M----RIEDNNDVKVANPKT---LEYTIVRTSLLPGLLETLSE 433 (551)
T ss_pred ChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHH-h----ccCCCCcEEeCCCCc---hhhhHhHhhhHHHHHHHHHh
Confidence 335667778899999999999999999887443 32 1 1222 2233332111 25567999998888888887
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
+. ++..|+++|++|.||..... .. .+.+++...-+-+.|.. ++ +..+......++..++
T Consensus 434 N~--~~~~~~~lFEiG~Vf~~~~~--~~-~~e~~~~~l~~~~~g~~---~d--f~d~Kg~ve~ll~~l~ 492 (551)
T TIGR00471 434 NK--HHELPQKIFEIGDVVVKDDK--SE-TRSRVVTKLAVGITHSE---AN--FNEIKSIVAALARELG 492 (551)
T ss_pred cc--cCCCCeeEEEEEEEEEcCCc--cc-cccceeeEEEEEEECCC---CC--HHHHHHHHHHHHHHcC
Confidence 77 45789999999999954311 11 13444455444444421 11 2233333356666665
|
Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. |
| >PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=89.10 E-value=1.3 Score=46.47 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=31.9
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecC
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWE 118 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E 118 (404)
.-+||++..+++....+.++. ++..|+++|.+|+|||.+
T Consensus 183 ~svLRtSLlPGLL~tLs~Nl~-Rg~~piRLFEIGRVFr~d 221 (529)
T PRK06253 183 RLTLRSHMTSGWFITLSSLLE-KRPLPIKLFSIDRCFRRE 221 (529)
T ss_pred cCccccchHHHHHHHHHHHHh-CCCCCEEEEEEeeEEecC
Confidence 456999988888777777765 357899999999999875
|
|
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.81 E-value=1 Score=45.27 Aligned_cols=244 Identities=16% Similarity=0.178 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
.+++..+.+.+|+.+...||.||-.|.|..+.+ +.| ..+|.+.--|. +-.|--. ..+|-.-
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV---EGG------sTLFkldYyGE-----eAyLTQS-----SQLYLEt 303 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQV---EGG------STLFKLDYYGE-----EAYLTQS-----SQLYLET 303 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEe---cCc------ceEEeecccCc-----hhhccch-----hHHHHHH
Confidence 466778889999999999999999999988765 233 23455443332 2222111 1222221
Q ss_pred hccCCCCC--eEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH-HHHHHHHHHhCCcceEeeCC
Q 015587 98 IRGHRDLP--LKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL-ELYRRIYEEFLAVPVIKGKK 174 (404)
Q Consensus 98 i~s~~~lP--lk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~-~~y~~~~~~l~~ipv~~g~~ 174 (404)
-|| -.+|.|...||.|++-++- .+.||+..|++..+.+-.+...-+..++ +...+++++ |
T Consensus 304 -----clpAlgdvy~I~~SyRAEkSrTRR--HLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~d----p------ 366 (545)
T KOG0555|consen 304 -----CLPALGDVYCIQQSYRAEKSRTRR--HLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLED----P------ 366 (545)
T ss_pred -----hhhhcCceeEecHhhhhhhhhhhh--hhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhC----h------
Confidence 133 3689999999999876665 5789999999999988877655555443 233333332 2
Q ss_pred CCcCcccHHHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhH
Q 015587 175 SELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGW 254 (404)
Q Consensus 175 ~~~ekf~FRli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~ 254 (404)
++.|+... -|.-.+|- -|.. -+.|. +-..-|++++++-+ +.....+|.
T Consensus 367 ----------~~~li~~l-------nP~f~~P~----~PFk--------Rm~Y~-dAI~wLke~~vk~e--dg~~fefGd 414 (545)
T KOG0555|consen 367 ----------IAPLIKQL-------NPDFKAPK----RPFK--------RMNYS-DAIEWLKEHDVKKE--DGTDFEFGD 414 (545)
T ss_pred ----------hhhhHHHh-------CCCCCCCC----Cchh--------cCCHH-HHHHHHHhcCCcCc--cCccccccc
Confidence 33344432 12211211 0111 11121 22345777776554 222245555
Q ss_pred HHHHH------HHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeec
Q 015587 255 KYSHW------EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIV 328 (404)
Q Consensus 255 k~~~a------e~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~ 328 (404)
-+.+| +-.|+|+.+.==|-|++. .-+++-.+....+-+.+-|..-|-+++.. -..+
T Consensus 415 DI~eAaER~mtdtIg~PIfLtrFpveiKs--FYM~rc~dd~~lTESvD~LmPnVGEIvGG----------------SMRi 476 (545)
T KOG0555|consen 415 DIPEAAERKMTDTIGVPIFLTRFPVEIKS--FYMKRCEDDPRLTESVDVLMPNVGEIVGG----------------SMRI 476 (545)
T ss_pred chhhHHHHhhhhhcCCceEEeeccccccc--eeeecccCccccceeeeeecCCccccccc----------------eeee
Confidence 55554 457999877644444433 33333222222333334344444444432 2366
Q ss_pred cCHHHHHHHhcCCCEEEee
Q 015587 329 KTWDEFVEALGQRKMILAP 347 (404)
Q Consensus 329 ~~~~e~~~~~~~~~~~~~p 347 (404)
.+.||+.+.++..|+=-.|
T Consensus 477 ~d~eeLlagfkRegId~~p 495 (545)
T KOG0555|consen 477 DDSEELLAGFKREGIDPDP 495 (545)
T ss_pred ccHHHHHHHHhhcCCCCCC
Confidence 8899999988766654333
|
|
| >PLN02265 probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
|---|
Probab=87.30 E-value=3.6 Score=44.36 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhh-HhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l-~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
.-.+++.+.+|+.+...||+|+.|-+|.+.+. +.+ .+. +.-..+...+..--. .+-=+||++.=+.+....+.+
T Consensus 397 ~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~-~~~~~~~v~I~NP~s---~e~~vlRtSLlPgLL~~l~~N 471 (597)
T PLN02265 397 QPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNR-EDDGNSAVIIGNPRS---ADFEVVRTSLLPGLLKTLGHN 471 (597)
T ss_pred CHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcC-CccCCceEEECCCcc---hhHHHHHHhhHHHHHHHHHHh
Confidence 33677888899999999999999999988754 532 111 100012233322111 255578998888877777776
Q ss_pred hccCCCCCeEEEeeeceeecC
Q 015587 98 IRGHRDLPLKLNQWCNVVRWE 118 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E 118 (404)
.. +.+|+|+|++|.||--+
T Consensus 472 ~~--~~~p~klFEiG~V~~~~ 490 (597)
T PLN02265 472 KD--APKPIKLFEVSDVVLLD 490 (597)
T ss_pred hc--CCCCeeEEEeEeEEecC
Confidence 53 35699999999999443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 404 | ||||
| 4hvc_A | 519 | Crystal Structure Of Human Prolyl-trna Synthetase I | 1e-101 | ||
| 1h4q_A | 477 | Prolyl-Trna Synthetase From Thermus Thermophilus Co | 2e-75 | ||
| 1nj1_A | 501 | Crystal Structure Of Prolyl-Trna Synthetase From Me | 3e-52 | ||
| 3ial_A | 518 | Giardia Lamblia Prolyl-Trna Synthetase In Complex W | 1e-42 | ||
| 1nj8_A | 459 | Crystal Structure Of Prolyl-Trna Synthetase From Me | 8e-28 | ||
| 1nj8_A | 459 | Crystal Structure Of Prolyl-Trna Synthetase From Me | 2e-18 | ||
| 2j3l_A | 572 | Prolyl-Trna Synthetase From Enterococcus Faecalis C | 2e-07 | ||
| 2i4l_A | 458 | Rhodopseudomonas Palustris Prolyl-trna Synthetase L | 4e-07 | ||
| 3ugq_A | 460 | Crystal Structure Of The Apo Form Of The Yeast Mito | 3e-04 |
| >pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In Complex With Halofuginone And Atp Analogue Length = 519 | Back alignment and structure |
|
| >pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed With Trnapro(Cgg), Atp And Prolinol Length = 477 | Back alignment and structure |
|
| >pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Bound To Cysteine Sulfamoyl Adenylate Length = 501 | Back alignment and structure |
|
| >pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With Prolyl- Adenylate Length = 518 | Back alignment and structure |
|
| >pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459 | Back alignment and structure |
|
| >pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459 | Back alignment and structure |
|
| >pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis Complexed With A Prolyl-Adenylate Analogue ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine) Length = 572 | Back alignment and structure |
|
| >pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase Length = 458 | Back alignment and structure |
|
| >pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast Mitochondrial Threonyl- Trna Synthetase Determined At 2.1 Angstrom Resolution Length = 460 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Length = 477 | Back alignment and structure |
|---|
Score = 569 bits (1468), Expect = 0.0
Identities = 169/462 (36%), Positives = 249/462 (53%), Gaps = 69/462 (14%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+ +Y + G ++RP+ +IWE +Q+ D K+ QN YFPLF+ + L+KE +H+EG
Sbjct: 27 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEG 86
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F+PE+A VT +G +LE P+A+RPTSETV+ +SKWIR RDLP LNQW NVVRWE
Sbjct: 87 FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEM- 145
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE-- 178
PF+R+ EFLWQEGHTA AT+ EA++EV ++L +Y R+ E+ A+PVI+G K+E E
Sbjct: 146 RTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKF 205
Query: 179 --------------NSKFVQI----------------------GVMVMVH---------- 192
+ K +Q + VH
Sbjct: 206 AGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRF 265
Query: 193 --------GDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
GDD+GL+LPP++A +QV+++P+ YKD + + +A + L G+R +
Sbjct: 266 IGAIIMTHGDDRGLVLPPRLAPIQVVIVPI-YKDESRERVLEAAQGLRQALLAQGLRVHL 324
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
D RD ++PG+K+ WE+KGVP R+E+GPKDL Q R G K LP +L E +
Sbjct: 325 DDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPLAALPEALPG 383
Query: 305 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKG 364
L+ E L+ A R+ + V T++ F EA+ Q LA C ++ E+ ++ T
Sbjct: 384 KLDAFHEELYRRALAFREDHTRKVDTYEAFKEAV-QEGFALAFHCGDKACERLIQEETT- 441
Query: 365 EMGAAKTLCSPLEQPEVPEGTLCFASGKPAK--KWTYWGRSY 404
A T C P E PE C G+P+ K + ++Y
Sbjct: 442 ----ATTRCVPFEAE--PEEGFCVRCGRPSAYGKRVVFAKAY 477
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Length = 518 | Back alignment and structure |
|---|
Score = 557 bits (1437), Expect = 0.0
Identities = 124/484 (25%), Positives = 200/484 (41%), Gaps = 82/484 (16%)
Query: 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE 59
+++ Y + GC + RP+ + + + + E K+ I FP + + L+KE DHI+
Sbjct: 37 LVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIK 96
Query: 60 GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF 119
GF E WV K G LE +A+RPTSET +Y FSKW+R ++DLPLK++Q C + R E
Sbjct: 97 GFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHET 156
Query: 120 SNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE- 178
N P IR RE W E H AT +A ++ ++ I+ + L K ++ +
Sbjct: 157 KNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDR 216
Query: 179 ---------------NSKFVQI----------------------GVMVMVH--------- 192
+ +Q V +
Sbjct: 217 FPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGISTR 276
Query: 193 ---------GDDKGLMLPPKVASVQVIVIPVPY----KDADTQGIFDACTATVEKL-CEA 238
GD GL+LPP +A + V++IP+ Q + + L +
Sbjct: 277 VLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKL 336
Query: 239 GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAK-------- 290
G+R + D + S G K ++E+KGVPLRIE+G +DLAN Q V RD G
Sbjct: 337 GLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPIT 396
Query: 291 ---------IDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQ- 340
+ + +K+ L+ + L A ++ + K++DE V +
Sbjct: 397 EVMKVSSHTTENHELVVKNVIKDELDAYKARLKEKAFAFHNSMVTNCKSFDEIVACIENK 456
Query: 341 RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYW 400
+ P+ E + + K A+ ++ +P C SGKPA + Y
Sbjct: 457 GGLARFPFYTTEADGEVWDKKLKDACS-AEIRGHNPDENVLPGEV-CALSGKPAVCYMYC 514
Query: 401 GRSY 404
+SY
Sbjct: 515 AKSY 518
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459 | Back alignment and structure |
|---|
Score = 521 bits (1344), Expect = 0.0
Identities = 126/465 (27%), Positives = 220/465 (47%), Gaps = 86/465 (18%)
Query: 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE 59
+ + Y I GC + P+ I + + + FP+ + +L KE +HI+
Sbjct: 20 IYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIK 79
Query: 60 GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF 119
GF EV WVT G++ L+V +A+RPTSET +Y W++ H DLP+K+ Q N R+E
Sbjct: 80 GFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYET 139
Query: 120 SNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
+ P IR RE + ++E HTA +TK EA+++V + + +Y++ ++ L +P + K+ E +
Sbjct: 140 KHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDT-LGIPYLISKRPEWD 198
Query: 179 ----------------NSKFVQIG------------------------------------ 186
+ + +QI
Sbjct: 199 KFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGISD 258
Query: 187 ----VMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRA 242
++ +HGD+KGL+LPP VA +QV+++P+ +K + + EKL + R
Sbjct: 259 RVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKG-KEDIVMEKAKEIYEKL-KGKFRV 316
Query: 243 NSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERV 302
+ D RD PG K++ WE+KGVPLRIE+GPKD+ N ++ RRD K + L+E V
Sbjct: 317 HIDDRD-IRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVV 375
Query: 303 KELLEEVQESLFVAAKQRRDACIQIVKTW--DEFVEALGQRK-MILAPWCDEEEVEKDVK 359
++ L + E++ A ++ + I I++ DE L +++ +IL P+ +E E+ ++
Sbjct: 376 EKTLNNIMENIKNRAWEKFENFITILEDINPDEIKNILSEKRGVILVPFKEEIYNEE-LE 434
Query: 360 ARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
+ + A L + K+ ++Y
Sbjct: 435 EKVE-----ATILGETEYK---------------GNKYIAIAKTY 459
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 | Back alignment and structure |
|---|
Score = 319 bits (820), Expect = e-105
Identities = 65/180 (36%), Positives = 98/180 (54%), Gaps = 4/180 (2%)
Query: 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE 59
+I+ Y + G ++ P I + K I + FPL V L KE H++
Sbjct: 53 IIDQRYPVKGMHVWMPHGFMIRKNTLKILR-RILDRDHEEVLFPLLVPEDELAKEAIHVK 111
Query: 60 GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF 119
GF EV WVT G S L+ +A+RPTSETVMYP F+ W+R H DLP++ Q N R+E
Sbjct: 112 GFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYET 171
Query: 120 SNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
+ P IR RE ++E HT AT SEA+++V + +E+Y+ + L +P + ++ +
Sbjct: 172 KHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNS-LGIPYLITRRPPWD 230
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 | Back alignment and structure |
|---|
Score = 273 bits (700), Expect = 1e-87
Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 13/221 (5%)
Query: 185 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244
I ++ +HGD+ GL LPP VA+ QV+++P+ +K + + +AC +L AG R +
Sbjct: 293 IASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKK-AAEEVMEACRELRSRLEAAGFRVHL 351
Query: 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
D RD G KY WEM+GVPLR+EIGP+DL RRD G K+ + E ++E
Sbjct: 352 DDRD-IRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRE 410
Query: 305 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKM-ILAPWCDEEEVEKDVKARTK 363
L++++ E+L A +R ++ I+ +T +E + +++ I WC EEE DV+ + +
Sbjct: 411 LMKDILENLRTRAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVR 470
Query: 364 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404
L E C G+ A Y R+Y
Sbjct: 471 -----VDILGIQEEGSGT-----CINCGREAPYRAYLARTY 501
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Length = 572 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 192 HGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYS 251
+ D++G+ P +A + V+ + KD + EAG D R+
Sbjct: 456 NADERGINWPTGIAPFDLHVVQMNVKDEY---QTKLSQEVEAMMTEAGYEVLVDDRNE-R 511
Query: 252 PGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQE 311
G K++ ++ G P+RI +G K + V + G +++ + L + L+ E
Sbjct: 512 AGVKFADADLIGCPIRITVG-KKAVDGVVEVKIKRTGEMLEVRKEELESTLSILMNTTSE 570
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 185 IGVMVMV------HGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEA 238
+GV ++ DD G++ P VA +V ++ + DA T AC +L
Sbjct: 338 VGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATD---AACDQLYRELSAK 394
Query: 239 GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298
G+ D D G K++ ++ G+P +I +GP+ LA +V RR +GA+ +L +
Sbjct: 395 GVDVLYDDTDQ-RAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADV 453
Query: 299 VERV 302
V R+
Sbjct: 454 VARL 457
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Length = 471 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Query: 200 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW 259
+P +A +Q VI V + I D ++ + L + G R H
Sbjct: 332 MPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHI 391
Query: 260 EMKGVP-LRIEIGPKDLANDQVRAVR-RDNGAKIDLPRGSLVERVKELLEEV 309
E P + + IG K++ + VR D + + +E +
Sbjct: 392 ESTAKPAVNVFIGAKEVREKVL-DVRVFDLESMKRRRLAIAYGDAADAVENL 442
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-08
Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 30/189 (15%)
Query: 8 SGCYIMRPWAISIWETMQKFF-DAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVA 66
G +I P + I+ T +K + ++ + + FP V+ V K H +G PE+
Sbjct: 221 RGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMK-SGHAKGVYPEIY 279
Query: 67 WVTKSGESDLEV--------------------------PIAIRPTSETVMYPYFSKWIRG 100
+V D + + + Y +
Sbjct: 280 YVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLP 339
Query: 101 HRDLPLKLNQWCNVV-RWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159
+ ++P+K+ R+E R EF E TK E ++ + Y
Sbjct: 340 NEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIV-WIGTKEEVLKCAEELHDRYMH 398
Query: 160 IYEEFLAVP 168
I+ + L +
Sbjct: 399 IFNDILDIE 407
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 200 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW 259
P +A VQV+++ + T + +KL AGIR +D R N G+K
Sbjct: 292 FPTWLAPVQVVIMNI------TDSQSEYVNELTQKLSNAGIRVKADLR-NEKIGFKIREH 344
Query: 260 EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQE 311
++ VP + G K++ + +V AVR G DL + E +++L +E++
Sbjct: 345 TLRRVPYMLVCGDKEVESGKV-AVRTRRGK--DLGSMDVNEVIEKLQQEIRS 393
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 205 ASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 264
A QV +IPV + D D ++L G+R + D R N G+K +M+ +
Sbjct: 544 APKQVQIIPV---NVDLHY--DYARQLQDELKSQGVRVSIDDR-NEKMGYKIREAQMQKI 597
Query: 265 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQE 311
P +I +G K++ N+QV VR+ D E + L++E++
Sbjct: 598 PYQIVVGDKEVENNQV-NVRQYGSQ--DQETVEKDEFIWNLVDEIRL 641
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 200 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW 259
P +A VQV+++ + D+Q + +KL AGIR +D R N G+K
Sbjct: 533 FPTWLAPVQVVIMNI----TDSQS--EYVNELTQKLSNAGIRVKADLR-NEKIGFKIREH 585
Query: 260 EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQE 311
++ VP + G K++ + +V AVR G DL + E +++L +E++
Sbjct: 586 TLRRVPYMLVCGDKEVESGKV-AVRTRRGK--DLGSMDVNEVIEKLQQEIRS 634
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 185 IGVMVMVHG-DDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 243
IG+ ++ G++ QV+V+ + + ++L +AG+
Sbjct: 349 IGLTRLISRLLKAGILNTLPPTPAQVVVVNMQ------DELMPTYLKVSQQLRQAGLNVI 402
Query: 244 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303
++F G ++ + +G+ + IG + A + +G ++++ L E +K
Sbjct: 403 TNFEKR-QLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIK 461
Query: 304 ELL 306
L
Sbjct: 462 RRL 464
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 3e-04
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 19/113 (16%)
Query: 211 VIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDF-----RDNYSPGWKYSHWEMKGVP 265
+I + T +F L F R NY + S + +
Sbjct: 54 IIMSKDAVSGTLRLFW-------TLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTE--- 101
Query: 266 LRIEIGPKDLANDQVRAVRRDNG--AKIDLPRGSLVERVKELLEEVQESLFVA 316
R + +Q + DN AK ++ R ++++ L E++ + V
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Length = 460 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 205 ASVQVIVIPVPYKDADT-----------QGIFDACTATVEKLCEAGIRANSDFRDNYSPG 253
Q ++IPV K+ + +A L + + D R+ G
Sbjct: 344 NPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNE-PVG 402
Query: 254 WKYSHWEMKGVPLRIEIGPKDLANDQVRAVR-RDNGAKIDLPRGSLVERVKELLEEVQE 311
++ +K I +G +++ + +R RDN + + ++ + ++ +E +
Sbjct: 403 YRIKSAILKNYSYLIIVGDEEVQLQKY-NIRERDN--RKSFEKLTMSQIWEKFIELEKN 458
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 404 | |||
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 100.0 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 100.0 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 100.0 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 100.0 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 100.0 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 100.0 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 100.0 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 100.0 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 100.0 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 100.0 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 100.0 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 100.0 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 100.0 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 100.0 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 100.0 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 100.0 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 100.0 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 100.0 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 100.0 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 100.0 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 100.0 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 100.0 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 100.0 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 100.0 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 100.0 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 100.0 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 100.0 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 100.0 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 100.0 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 99.98 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 99.98 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 99.97 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 99.97 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 99.96 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 99.94 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 99.87 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 99.78 | |
| 1v95_A | 130 | Nuclear receptor coactivator 5; coactivator indepe | 99.72 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.67 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.4 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 99.21 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 98.93 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 98.92 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 98.81 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 98.81 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 98.75 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 98.59 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 98.56 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 98.34 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 98.31 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 98.21 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 98.15 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 98.14 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 98.11 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 98.04 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 97.98 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 97.98 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 97.89 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 97.69 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.65 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 97.6 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.38 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.94 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.93 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.92 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.84 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 96.66 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 96.62 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 95.29 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 94.88 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 94.7 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 94.04 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 93.95 |
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-100 Score=791.42 Aligned_cols=404 Identities=52% Similarity=1.017 Sum_probs=374.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+|+++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+++|+.+|++++
T Consensus 44 lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l 123 (519)
T 4hvc_A 44 MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPI 123 (519)
T ss_dssp CEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEE
T ss_pred CeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccce
Confidence 57888999999999999999999999999999999999999999999999988899999999999999998875556789
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|++++++|++|++||++||+|+||||+|||||.+|++||+|+|||+|+|+|++|+++++|++|+..++++|.++
T Consensus 124 ~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i 203 (519)
T 4hvc_A 124 AIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQV 203 (519)
T ss_dssp EECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc------------------------------c----H------------------------
Q 015587 161 YEEFLAVPVIKGKKSELENS------------------------------K----F------------------------ 182 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf------------------------------~----F------------------------ 182 (404)
|++|+.+|+..+.++++++| + |
T Consensus 204 ~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~~vh~~~~Gi~ 283 (519)
T 4hvc_A 204 YEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLT 283 (519)
T ss_dssp HHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEEECEEEEEEEE
T ss_pred HHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhhcCcEEeccccCCCEEEEEEccccHH
Confidence 99986799988877766654 0 1
Q ss_pred -HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCC----CCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHH
Q 015587 183 -VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYK----DADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYS 257 (404)
Q Consensus 183 -Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~----~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~ 257 (404)
|+|++|+|+|+|++|++||+++||+||+|||++.+ +...+++.++|.+|++.|+++||+|++|+++++++|+||+
T Consensus 284 ~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~ 363 (519)
T 4hvc_A 284 TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFN 363 (519)
T ss_dssp THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999999999999731 1112568899999999999999999999998558999999
Q ss_pred HHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHH
Q 015587 258 HWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEA 337 (404)
Q Consensus 258 ~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~ 337 (404)
+|+++|||++|+||++|+++|+|+|++|++++|..|+++++++.|.++|++||++||++|++++++||+.++|||||+++
T Consensus 364 ~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~~i~~~l~~~a~~~~~~~~~~~~~~~~~~~~ 443 (519)
T 4hvc_A 364 HWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKI 443 (519)
T ss_dssp HHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCSHHHHHHH
T ss_pred HHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEeecCCChhHHHHHHHhhcCC--------cCCCeeecccCCCCC-CCCCCcccccCCCcceEEEEeecC
Q 015587 338 LGQRKMILAPWCDEEEVEKDVKARTKGE--------MGAAKTLCSPLEQPE-VPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 338 ~~~~~~~~~pwc~~~~~e~~ik~~~~~~--------~~~~~~~c~p~~~~~-~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
|++||||++||||+.+||++||++|+++ +||||+|||||+++. ...+++|++||+||+.|++|||||
T Consensus 444 ~~~~~~~~~~w~~~~~~e~~ik~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~a~~~~~~~~~y 519 (519)
T 4hvc_A 444 LDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY 519 (519)
T ss_dssp HHTTCEEEEEECCCHHHHHHHHHHHHC----------CCCEEEEEESSCSSCCCTTCBCCC--CBCCEEEEEECBC
T ss_pred HhcCCEEEEeccCCHHHHHHHHHHhccccccccccccCCceeeeccCCCcccCCCCCcccccCCcceEEEEEEEeC
Confidence 9999999999999999999999998532 589999999999874 335568999999999999999999
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-99 Score=783.32 Aligned_cols=397 Identities=32% Similarity=0.560 Sum_probs=371.2
Q ss_pred CCcc-CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+|| ++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+++|+++++++
T Consensus 37 lid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~ 116 (518)
T 3ial_A 37 LVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEER 116 (518)
T ss_dssp CEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEE
T ss_pred CcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcc
Confidence 5677 899999999999999999999999999999999999999999999998889999999999999999886556689
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++||||+|++++++|++|++||++||+|+|||++|||||.+|++||+|+|||+|+|+|+||++++++++|+..++++|.+
T Consensus 117 l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~ 196 (518)
T 3ial_A 117 LALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDT 196 (518)
T ss_dssp EEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HH-HHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------
Q 015587 160 IY-EEFLAVPVIKGKKSELENS-----------------------------KF--------------------------- 182 (404)
Q Consensus 160 ~~-~~l~~ipv~~g~~~~~ekf-----------------------------~F--------------------------- 182 (404)
+| +.|| +|+.++.++++++| +|
T Consensus 197 i~~~~LG-lp~~~~~~~~~e~~~gA~yt~~iE~~~pdgr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h~~~~G~~~ 275 (518)
T 3ial_A 197 IFSDELC-FKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGIST 275 (518)
T ss_dssp HHTTTTC-CCCEEEEECGGGCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCCEECTTCCEECCEEEEEEEET
T ss_pred HHHHhcC-CcEEeeecChhhccCCCccceEEEEEcCCCCEEEEeceecccchhhhhcCcEEECCCCCEeeeEEeccchHH
Confidence 99 7775 89988877666553 11
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCC----ChhhHHHHHHHHHHHHhhC-CCEEEEeCCCCCChhHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDA----DTQGIFDACTATVEKLCEA-GIRANSDFRDNYSPGWKYS 257 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~----~~~~~~~~a~~i~~~Lr~~-Girv~~D~~~~~s~g~k~~ 257 (404)
|+|++|+|+|+|++|++||+++||+||+|||+..++. +.+++.++|.+|++.|+++ |+||++|+|++.++|+||+
T Consensus 276 R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~ 355 (518)
T 3ial_A 276 RVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLY 355 (518)
T ss_dssp HHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHH
T ss_pred HHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999999999999999999985431 1156889999999999999 9999999994369999999
Q ss_pred HHHHcCCCEEEEECccccCCCeEEEEECCCCc--eeeechhhH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 015587 258 HWEMKGVPLRIEIGPKDLANDQVRAVRRDNGA--KIDLPRGSL---------------VERVKELLEEVQESLFVAAKQR 320 (404)
Q Consensus 258 ~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~--k~~v~~~el---------------~~~i~~~l~~~~~~l~~~a~~~ 320 (404)
+|+++|||++|+||++|+++|+|+|++|++++ +..|++++| ++.|.++|++||++||++|+++
T Consensus 356 ~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~~v~~~el~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~a~~~ 435 (518)
T 3ial_A 356 YYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHELVVKNVIKDELDAYKARLKEKAFAF 435 (518)
T ss_dssp HHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCEEEEHHHHHCCC---------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECcchhhCCEEEEEECCCCccceeEeeHHHHhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999 8999999999999999999999
Q ss_pred HHcCeeeccCHHHHHHHhcC-CCEEEeecCCCh----hHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcc
Q 015587 321 RDACIQIVKTWDEFVEALGQ-RKMILAPWCDEE----EVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAK 395 (404)
Q Consensus 321 ~~~~~~~~~~~~e~~~~~~~-~~~~~~pwc~~~----~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~ 395 (404)
+++||+.++|||||+++|++ ||||++||||+. +||++||++| |||+|||||+++. ..+.+|++||+||+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~~-----~~~~~~~p~~~~~-~~~~~c~~~g~~a~ 509 (518)
T 3ial_A 436 HNSMVTNCKSFDEIVACIENKGGLARFPFYTTEADGEVWDKKLKDAC-----SAEIRGHNPDENV-LPGEVCALSGKPAV 509 (518)
T ss_dssp HHHTEEECSSHHHHHHHHHHTCSEEEEEESCSSGGGHHHHHHHHHHH-----SCEEEEECTTSCC-CTTCBCTTTCSBCS
T ss_pred HHhCEEEcCCHHHHHHHHhcCCCEEEEEecCCCccchHHHHHHHHHh-----CCeEeccccccCC-CCCCeeeccCCcce
Confidence 99999999999999999976 589999999999 9999999999 9999999999854 24557999999999
Q ss_pred eEEEEeecC
Q 015587 396 KWTYWGRSY 404 (404)
Q Consensus 396 ~~~~~~rsY 404 (404)
.|++|||||
T Consensus 510 ~~~~~~~~y 518 (518)
T 3ial_A 510 CYMYCAKSY 518 (518)
T ss_dssp EEEEEECBC
T ss_pred EEEEEEEeC
Confidence 999999999
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-96 Score=753.79 Aligned_cols=391 Identities=42% Similarity=0.780 Sum_probs=358.0
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+++++++|++||+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+|+|++++++++
T Consensus 27 li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l 106 (477)
T 1hc7_A 27 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPL 106 (477)
T ss_dssp SEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEE
T ss_pred CeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeE
Confidence 45778899999999999999999999999999999999999999999999998899999999999999999865566999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|++++++|++|++||++||+|+||||+|||||.+ ++||+|+|||+|+|+|++|++++++++|++.++++|.++
T Consensus 107 ~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~-~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i 185 (477)
T 1hc7_A 107 AVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-TRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARL 185 (477)
T ss_dssp EECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-CBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCC-CCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999977 569999999999999999999999999999999999999
Q ss_pred H-HHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------H
Q 015587 161 Y-EEFLAVPVIKGKKSELENS-----------------------------KF---------------------------V 183 (404)
Q Consensus 161 ~-~~l~~ipv~~g~~~~~ekf-----------------------------~F---------------------------R 183 (404)
| +.|| +|+.++.+++.++| +| |
T Consensus 186 ~~~~Lg-l~~~~~~~~~~e~~~g~~~~~~ie~~~~dgr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~~~~~~GigeR 264 (477)
T 1hc7_A 186 AREYAA-IPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWR 264 (477)
T ss_dssp HHHHHC-CCCEEEECCTTTSCTTSSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEETH
T ss_pred HHHhcC-CeEEEEeCChHHhcCCcccceEEEEEcCCCcEEEEeeeEEcccccccccCeEEECCCCCEEeeeEeeccHHHH
Confidence 9 7786 78888877655554 11 9
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC-CCCChhHHHHHHHHc
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR-DNYSPGWKYSHWEMK 262 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~-~~~s~g~k~~~ae~~ 262 (404)
+|++|+|+|+|++|++||+++||+||+|+|++.++ +.++..++|.+|++.|+++|++|++|++ + .++|+||++|+++
T Consensus 265 li~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~-~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~-~s~g~k~~~a~~~ 342 (477)
T 1hc7_A 265 FIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDE-SRERVLEAAQGLRQALLAQGLRVHLDDRDQ-HTPGYKFHEWELK 342 (477)
T ss_dssp HHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTT-THHHHHHHHHHHHHHHHHTTCCEEECCCSS-SCHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccccCCcccCCceEEEEEcCCcc-hHHHHHHHHHHHHHHHHhCCEEEEEeCCCC-CCHHHHHHHHhhc
Confidence 99999999999999999999999999999997532 1126889999999999999999999998 6 6999999999999
Q ss_pred CCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCCC
Q 015587 263 GVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRK 342 (404)
Q Consensus 263 GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~ 342 (404)
|+|++|+||++|+++|+|+|++|+ ++|..|+++++++.|.+++++||++||++|++++++||+.++|||||+++|+ ||
T Consensus 343 G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~-~~ 420 (477)
T 1hc7_A 343 GVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQ-EG 420 (477)
T ss_dssp TCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECSSHHHHHHHTT-TS
T ss_pred CCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEECCCHHHHHHHHh-CC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999 88
Q ss_pred EEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcce--EEEEeecC
Q 015587 343 MILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKK--WTYWGRSY 404 (404)
Q Consensus 343 ~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~--~~~~~rsY 404 (404)
||++||||+.+||++||++| |||+|||||+++.. .+ +|++||+||++ |++|||||
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~~-~~-~c~~~~~~~~~~~~~~~~~~y 477 (477)
T 1hc7_A 421 FALAFHCGDKACERLIQEET-----TATTRCVPFEAEPE-EG-FCVRCGRPSAYGKRVVFAKAY 477 (477)
T ss_dssp EEEECCCCCHHHHHHHHHHH-----CCEEEEEESSSCCC-CC-BCTTTCCBCCTTSCEEEECBC
T ss_pred EEEEecCCCHHHHHHHHHHh-----CCceeecccccccC-CC-CCCCCCCcccceeEEEEEeeC
Confidence 99999999999999999999 99999999998753 24 59999999999 99999999
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-91 Score=725.79 Aligned_cols=389 Identities=35% Similarity=0.650 Sum_probs=361.2
Q ss_pred CCcc-CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+++ ++++|+++|+|.|+++|++|++++++.+++ ||++|+||+|++.++|.+++||+++|.++||+|+++|+++++++
T Consensus 53 lid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~ 131 (501)
T 1nj1_A 53 IIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRK 131 (501)
T ss_dssp CEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEE
T ss_pred CccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCe
Confidence 4566 789999999999999999999999999999 99999999999999998889999999999999999875444589
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeE-EeceeeecCChhhHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYR 158 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~-q~e~~~~~~~~~~a~~e~~~~~~~y~ 158 (404)
++||||+|++++++|++|++||++||+|+||||+|||||.+.|+||+|+|||+ |+|+|++|++++++++|+..++++|.
T Consensus 132 l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~ 211 (501)
T 1nj1_A 132 LALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYK 211 (501)
T ss_dssp EEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976488999999999 99999999999999999999999999
Q ss_pred HHHHHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------
Q 015587 159 RIYEEFLAVPVIKGKKSELENS-----------------------------KF--------------------------- 182 (404)
Q Consensus 159 ~~~~~l~~ipv~~g~~~~~ekf-----------------------------~F--------------------------- 182 (404)
++|+.|| +|+.++.++..++| +|
T Consensus 212 ~i~~~Lg-l~~~~~~~~~~e~~~~a~~~~die~~l~~g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h~~g~Gige 290 (501)
T 1nj1_A 212 EFFNSLG-IPYLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSD 290 (501)
T ss_dssp HHHHHHT-CCCEEEECCTTTSCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEECT
T ss_pred HHHHHCC-CeEEEEeCCchhhcCCcccceEEEEEcCCCCEEEEEEEEeccccchhhcCeEEECCCCCEEeeeeccccHHH
Confidence 9999987 78877766544433 00
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEe-cCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPV-PYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEM 261 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi-~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~ 261 (404)
|+|++|+|+|+|++|+.||++++|+||+|+|+ ..++ .++..++|.+|++.|+++|++|++|+++ .++|+||++|++
T Consensus 291 Rli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~--~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~-~s~g~k~~~a~~ 367 (501)
T 1nj1_A 291 RVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKA--AEEVMEACRELRSRLEAAGFRVHLDDRD-IRAGRKYYEWEM 367 (501)
T ss_dssp HHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSS--HHHHHHHHHHHHHHHHTTTCCEEECCCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCccCCccccCceEEEEEeccCCc--hHHHHHHHHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHh
Confidence 99999999999999999999999999999999 5211 0368899999999999999999999997 699999999999
Q ss_pred cCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcC-
Q 015587 262 KGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQ- 340 (404)
Q Consensus 262 ~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~- 340 (404)
+|+|++|+||++|+++|+|+|++|++++|..|+++++++.|.+++++||++||++|++++++||+.++|||||+++|++
T Consensus 368 ~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 447 (501)
T 1nj1_A 368 RGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEK 447 (501)
T ss_dssp EECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHHH
T ss_pred cCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 341 RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 341 ~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
||||++||||+.+||++||++| |||+|||| + +. ++ +|++||+||+.|++|||||
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p-~-~~--~~-~c~~~~~~~~~~~~~~~~y 501 (501)
T 1nj1_A 448 RGIISFMWCGEEECGMDVEEKV-----RVDILGIQ-E-EG--SG-TCINCGREAPYRAYLARTY 501 (501)
T ss_dssp CSEEEEEECCCHHHHHHHHHHH-----TCEEEEEE-E-CS--CC-BCTTTCSBCCEEEEEECBC
T ss_pred CCEEEEecCCCHHHHHHHHHHh-----CCceeccC-C-CC--CC-cCcCcCCchheEEEEEeeC
Confidence 7899999999999999999999 99999999 4 32 34 5999999999999999999
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-87 Score=690.94 Aligned_cols=378 Identities=33% Similarity=0.636 Sum_probs=354.1
Q ss_pred CCcc-CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+++ ++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+|+|+++++++
T Consensus 20 li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~ 99 (459)
T 1nj8_A 20 IYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVK 99 (459)
T ss_dssp SCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEE
T ss_pred CccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCe
Confidence 5677 899999999999999999999999999999999999999999999999899999999999999999985555699
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeE-EeceeeecCChhhHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYR 158 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~-q~e~~~~~~~~~~a~~e~~~~~~~y~ 158 (404)
++||||+|++++++|++|++||++||+|+||||+|||||.++|+||+|+|||+ |+|+|++|+++++|++|+..++++|.
T Consensus 100 l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~ 179 (459)
T 1nj8_A 100 LALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYK 179 (459)
T ss_dssp EEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999965488999999999 99999999999999999999999999
Q ss_pred HHHHHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------
Q 015587 159 RIYEEFLAVPVIKGKKSELENS-----------------------------KF--------------------------- 182 (404)
Q Consensus 159 ~~~~~l~~ipv~~g~~~~~ekf-----------------------------~F--------------------------- 182 (404)
++|+.|| +|+.++.+++.++| +|
T Consensus 180 ~~~~~LG-l~~~~~~~~~~ek~~ga~~~~~ie~~~~dg~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v~~~~~Gige 258 (459)
T 1nj8_A 180 KFFDTLG-IPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGISD 258 (459)
T ss_dssp HHHHHHT-CCCEEEEECTTSCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTTSSEEECEEEEEEECT
T ss_pred HHHHHCC-CceEEeecCchhhcCCcccceeEEEEcCCCcEEEEEEEeecccccccccCeEEECCCCCEeeeeEeeccHHH
Confidence 9999987 78877766554544 11
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEe-cCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPV-PYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEM 261 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi-~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~ 261 (404)
|+|++|+|+|+|++|+.||+++||+||+|+|+ +.++ .++..++|.+|++.|+++ ++|++|+++ .++|+||++|++
T Consensus 259 Rli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~--~~~~~~~a~~l~~~Lr~~-i~v~~D~~~-~~~g~k~~~a~~ 334 (459)
T 1nj8_A 259 RVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGK--EDIVMEKAKEIYEKLKGK-FRVHIDDRD-IRPGRKFNDWEI 334 (459)
T ss_dssp HHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSC--HHHHHHHHHHHHHHHHTT-SCEEECCSC-SCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCc--HHHHHHHHHHHHHHHhhh-cEEEEECCC-CCHHHHHHHHHH
Confidence 99999999999999999999999999999999 5311 036889999999999999 999999997 699999999999
Q ss_pred cCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCH--HHHHHHhc
Q 015587 262 KGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTW--DEFVEALG 339 (404)
Q Consensus 262 ~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~--~e~~~~~~ 339 (404)
+|+|++|+||++|+++|+|+|++|++++|..|+++++++.|.+++++||++||++|++++++||+.++|| |||+++|+
T Consensus 335 ~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
T 1nj8_A 335 KGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFENFITILEDINPDEIKNILS 414 (459)
T ss_dssp TTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECSSCCHHHHHHHTT
T ss_pred cCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcccCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred C-CCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 340 Q-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 340 ~-~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
+ ||||++|| |+.+||++||++| |||+|||| + +||++|++|||||
T Consensus 415 ~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~-~--------------~~~~~~~~~~~~y 459 (459)
T 1nj8_A 415 EKRGVILVPF-KEEIYNEELEEKV-----EATILGET-E--------------YKGNKYIAIAKTY 459 (459)
T ss_dssp TTCSEEEEEC-CGGGCSHHHHHHH-----SSCEEEEE-E--------------CSSSEEEEEECBC
T ss_pred hCCCEEEEec-CCHHHHHHHHHHh-----CCeeccCc-C--------------CcccEEEEEEeeC
Confidence 7 78999999 9999999999999 99999999 2 8999999999999
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-59 Score=476.42 Aligned_cols=288 Identities=21% Similarity=0.306 Sum_probs=257.3
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHH-HhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~-~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
.++|+++|+|.|+++|++|++++++.+ +++||++|.||+|++.++|. ++||++.|.++||+|++++. .++.++|||
T Consensus 52 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sGh~~~~~~emy~~~d~~~--~~~~l~LrP 128 (460)
T 3uh0_A 52 LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWE-KSGHWENYADDMFKVETTDE--EKEEYGLKP 128 (460)
T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHH-HHTCTTTSGGGSCEECC--------CEEECS
T ss_pred CCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHH-hcCCccccccceEEEecCCC--CCceEEEcc
Confidence 489999999999999999999999999 99999999999999999997 48999999999999998641 128899999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH-H
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY-E 162 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~-~ 162 (404)
|+|++++.+|+++++||++||+|+||||+|||||.++ ++||+|+|||+|+|+|+| ++++++++|+..+++++.++| +
T Consensus 129 t~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f-~~~e~~~~e~~~~i~~~~~~~~~ 207 (460)
T 3uh0_A 129 MNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNK 207 (460)
T ss_dssp CSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEE-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999775 589999999999999995 667899999999999999999 8
Q ss_pred HhCCcc-----------eEeeCCCCcCcc---------------------------------------------------
Q 015587 163 EFLAVP-----------VIKGKKSELENS--------------------------------------------------- 180 (404)
Q Consensus 163 ~l~~ip-----------v~~g~~~~~ekf--------------------------------------------------- 180 (404)
.|| +| +.++.++ ++|
T Consensus 208 ~lG-l~~~~~~~~~~~~~~l~t~p--e~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpkid~~~~d~~gr~~ 284 (460)
T 3uh0_A 208 IFP-FVKGGSGAESNYFINFSTRP--DHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTH 284 (460)
T ss_dssp TSC-CC-----CCSSCEEEEECCC--SSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCEEEEEEECTTSCEE
T ss_pred HcC-CCCcccccccceEEEEccCC--cccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccceEEEEEEccCCCee
Confidence 776 56 4443322 111
Q ss_pred -------c------H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCCh
Q 015587 181 -------K------F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADT 221 (404)
Q Consensus 181 -------~------F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~ 221 (404)
+ | |+|++|+|.| |+.||+|+||+||+|+|++.++
T Consensus 285 q~~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~Gg~eRli~~Lie~~----~g~~P~~laP~qv~Vipi~~~~--- 357 (460)
T 3uh0_A 285 QVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSN----EGRWPFWLNPYQAVIIPVNTKN--- 357 (460)
T ss_dssp EEEEEEEESHHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHH----TTCCCGGGCSCCEEEEESSTTC---
T ss_pred eecccccccccccccceEEECCCCCccCcEEEecCcchHHHHHHHHHHHHc----CCCCCCCCCCceEEEEEecCCc---
Confidence 0 1 9999999987 5799999999999999998642
Q ss_pred hhHHHHHHHHHHHHhhC--------------CCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCC
Q 015587 222 QGIFDACTATVEKLCEA--------------GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDN 287 (404)
Q Consensus 222 ~~~~~~a~~i~~~Lr~~--------------Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~ 287 (404)
++..++|.+|++.|+++ |++|++|+++ .++|+||++|+++|+|++|+||++|+++|+|+||+|++
T Consensus 358 ~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~-~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vtvr~r~~ 436 (460)
T 3uh0_A 358 VQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRN-EPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDN 436 (460)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCS-SCHHHHHHHHHHHTCSEEEEECHHHHHHTCEEEEEGGG
T ss_pred HHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhCCeEEEEECCC
Confidence 45889999999999998 9999999997 69999999999999999999999999999999999999
Q ss_pred Cc-eeeechhhHHHHHHHHHHH
Q 015587 288 GA-KIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 288 ~~-k~~v~~~el~~~i~~~l~~ 308 (404)
++ |..++++++++.|.+++++
T Consensus 437 ~e~q~~v~~~el~~~l~~~~~~ 458 (460)
T 3uh0_A 437 RKSFEKLTMSQIWEKFIELEKN 458 (460)
T ss_dssp TTSCEEECHHHHHHHHHHHHHT
T ss_pred CceeEEeeHHHHHHHHHHHHHh
Confidence 99 9999999999999988865
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=452.46 Aligned_cols=288 Identities=22% Similarity=0.386 Sum_probs=260.3
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|. .+|||+.|.++||+|+|+++ +.++|||
T Consensus 54 ~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~-~sg~~d~~~~em~~~~d~~~----~~~~LrP 128 (458)
T 2i4l_A 54 QEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWR-ESGRYDAYGPEMLRIADRHK----RELLYGP 128 (458)
T ss_dssp EEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHH-HHTHHHHSCTTSEEEECTTC----CEEEECS
T ss_pred ccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHH-hcCCccccccceEEEEeCCC----CeEEECC
Confidence 347999999999999999999999999999999999999999999995 57999999999999999988 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
|+|..++.+++.++.||++||+|+||+|+|||+|.+|+.||+|+|||+|.|+|+||.+.+++++|++.++++|.++|+.+
T Consensus 129 t~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~l 208 (458)
T 2i4l_A 129 TNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARM 208 (458)
T ss_dssp CCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999998
Q ss_pred CCcceEe----------------------eCC-----------------CC--------------c--------------
Q 015587 165 LAVPVIK----------------------GKK-----------------SE--------------L-------------- 177 (404)
Q Consensus 165 ~~ipv~~----------------------g~~-----------------~~--------------~-------------- 177 (404)
| +++.+ |.. .. .
T Consensus 209 G-l~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~ 287 (458)
T 2i4l_A 209 G-LKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYE 287 (458)
T ss_dssp T-CCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHH
T ss_pred C-CceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcCchhhhcChhhccccccc
Confidence 7 44321 100 00 0
Q ss_pred -Cc----------------c---------------------------cH-----HHHHHHHHHcCCCCCCCCCCCCCCce
Q 015587 178 -EN----------------S---------------------------KF-----VQIGVMVMVHGDDKGLMLPPKVASVQ 208 (404)
Q Consensus 178 -ek----------------f---------------------------~F-----Rli~~Lie~~~d~~Gl~lP~~iap~q 208 (404)
.. | .| |++++|+++|.|++|+.||+++||+|
T Consensus 288 ~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~~G~~~p~~~~gfgiGveRli~al~e~~~d~~g~~~p~~~ap~~ 367 (458)
T 2i4l_A 288 SEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFR 367 (458)
T ss_dssp HHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHSEETTEECCCTTTCSCS
T ss_pred CCCCCcCceeeeeeccCcEEEecccccccCCcEEECCCCCEeceEEeeecccHHHHHHHHHHhhccccCCcCCcccCCce
Confidence 00 1 01 99999999999999999999999999
Q ss_pred EEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCC
Q 015587 209 VIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG 288 (404)
Q Consensus 209 V~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~ 288 (404)
|+|+|++.++ ++..++|.+|++.|+++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++
T Consensus 368 v~vi~~~~~~---~~~~~~a~~l~~~Lr~~Gi~v~~D~~~-~~~g~k~~~ad~~g~p~~iivG~~e~~~g~v~vr~r~~~ 443 (458)
T 2i4l_A 368 VTILNLKQGD---AATDAACDQLYRELSAKGVDVLYDDTD-QRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDG 443 (458)
T ss_dssp EEEEESSTTC---HHHHHHHHHHHHHHHHTTCCEEEECSS-CCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTC
T ss_pred EEEEecCCCC---HHHHHHHHHHHHHHhhCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEECCchhhCCEEEEEECCCC
Confidence 9999996432 568899999999999999999999997 599999999999999999999999999999999999999
Q ss_pred ceeeechhhHHHHH
Q 015587 289 AKIDLPRGSLVERV 302 (404)
Q Consensus 289 ~k~~v~~~el~~~i 302 (404)
++..++++++++.|
T Consensus 444 ~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 444 ARENLALADVVARL 457 (458)
T ss_dssp CEEEEETTTTTCC-
T ss_pred cEEEEeHHHHHHhh
Confidence 99999999987644
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-55 Score=464.36 Aligned_cols=285 Identities=20% Similarity=0.338 Sum_probs=257.5
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|.+ ||||+.|.++||. +|+++ +.++||||
T Consensus 259 ~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~~----~~~~LrP~ 332 (642)
T 1qf6_A 259 EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSEN----REYCIKPM 332 (642)
T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEETT----EEEEECSS
T ss_pred CCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecCC----ceEEecCC
Confidence 489999999999999999999999999999999999999999999976 8999999999999 88887 89999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+|++++++|+++++||++||+|+||+|+|||||.+ |++||+|+|||+|.|+|+|+ +++++++|+..+++++.++|+.|
T Consensus 333 ~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~-~~~~~~~e~~~~i~~~~~i~~~l 411 (642)
T 1qf6_A 333 NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYSTF 411 (642)
T ss_dssp SHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEc-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999987 58899999999999999966 67899999999999999999999
Q ss_pred CCcceE--eeCCCC--------cC--------------------------------------------------ccc---
Q 015587 165 LAVPVI--KGKKSE--------LE--------------------------------------------------NSK--- 181 (404)
Q Consensus 165 ~~ipv~--~g~~~~--------~e--------------------------------------------------kf~--- 181 (404)
|+-++. ++.+++ |+ .|+
T Consensus 412 Gl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~~df~l~~ 491 (642)
T 1qf6_A 412 GFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPS 491 (642)
T ss_dssp TCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEEEESSHHH
T ss_pred CCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEeeeEEEeccCCc
Confidence 842543 222110 00 010
Q ss_pred -H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHH
Q 015587 182 -F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEK 234 (404)
Q Consensus 182 -F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~ 234 (404)
| |+|++|+|+|+ ..||+|+||+||+|+|++ ++..++|.+|++.
T Consensus 492 r~~~~y~~~~g~~~~P~~~hrai~G~ieR~i~~liE~~~----~~~P~~laP~qv~vipi~------~~~~~~a~~v~~~ 561 (642)
T 1qf6_A 492 RLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFA----GFFPTWLAPVQVVIMNIT------DSQSEYVNELTQK 561 (642)
T ss_dssp HTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHT----TCCCTTTCSSCEEEEESS------HHHHHHHHHHHHH
T ss_pred cCCCEEEecCCCCcCcEEEEeccCCCHHHHHHHHHHHhc----CCCCcccCCceEEEEEeC------HHHHHHHHHHHHH
Confidence 0 99999999985 389999999999999997 4788999999999
Q ss_pred HhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 235 LCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 235 Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
|+++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.|.++++.
T Consensus 562 L~~~Gi~v~~D~~~-~~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~ 634 (642)
T 1qf6_A 562 LSNAGIRVKADLRN-EKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 634 (642)
T ss_dssp HHTTTCCEEEECCS-SCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHT
T ss_pred HHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 99999999999997 59999999999999999999999999999999999999999999999999988776653
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-54 Score=437.10 Aligned_cols=285 Identities=20% Similarity=0.328 Sum_probs=256.2
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||+ .|+++ +.++|||
T Consensus 17 ~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~~----~~~~LrP 90 (401)
T 1evl_A 17 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSEN----REYCIKP 90 (401)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEETT----EEEEECS
T ss_pred CCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecCC----ceEEEcC
Confidence 4589999999999999999999999999999999999999999999976 8999999999999 88887 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|++++++|++++.||++||+|+||+|+|||||.+ |++||+|+|||+|.|+|+++ +++++++|+..++++|.++|+.
T Consensus 91 ~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~-~~~~~~~e~~e~i~~~~~~~~~ 169 (401)
T 1evl_A 91 MNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYST 169 (401)
T ss_dssp CSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 78899999999999999875 6899999999999999999999
Q ss_pred hCCcce--EeeCCC--------------------------------------------------CcC--------ccc--
Q 015587 164 FLAVPV--IKGKKS--------------------------------------------------ELE--------NSK-- 181 (404)
Q Consensus 164 l~~ipv--~~g~~~--------------------------------------------------~~e--------kf~-- 181 (404)
||.-++ .++..+ -++ .|+
T Consensus 170 lgl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~l~ 249 (401)
T 1evl_A 170 FGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLP 249 (401)
T ss_dssp TTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEEESSHH
T ss_pred cCCCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEeeeeeeccccc
Confidence 984254 222210 000 010
Q ss_pred ------------------------H----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 182 ------------------------F----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 182 ------------------------F----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
| |++++|++.|++ .||++++|+||+|+|++ ++..++|.+|++
T Consensus 250 ~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~~----~~p~~~ap~~v~vi~~~------~~~~~~a~~l~~ 319 (401)
T 1evl_A 250 SRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG----FFPTWLAPVQVVIMNIT------DSQSEYVNELTQ 319 (401)
T ss_dssp HHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT----CCCTTTCSSCEEEEESS------GGGHHHHHHHHH
T ss_pred cccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhCC----cCCCCCCCeEEEEEecC------HHHHHHHHHHHH
Confidence 0 999999998853 79999999999999997 357889999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|++++|..++++++++.++++++
T Consensus 320 ~Lr~~Gi~v~~d~~~-~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~ 392 (401)
T 1evl_A 320 KLSNAGIRVKADLRN-EKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIR 392 (401)
T ss_dssp HHHHTTCCEEEECCS-SCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 999999999999987 5999999999999999999999999999999999999999999999999988876654
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-54 Score=442.85 Aligned_cols=301 Identities=18% Similarity=0.199 Sum_probs=265.0
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|.+ +||++.|.++||+| |+++ +.++||||
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sg~~~~~~~emy~~-d~~~----~~l~LRP~ 110 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKV-SGHIEFYRNNMYLF-DIEG----HEFAVKPM 110 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-TCCCTTGGGGSEEE-EETT----EEEEECSC
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhh-ccCccccccceEEE-ecCC----cEEEEccc
Confidence 579999999999999999999999999999999999999999999965 78999999999999 7777 89999999
Q ss_pred ChhHHHHHHHhhhccCC---CCCeEEEeeeceeecCCCCC-CCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHR---DLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~---~lPlk~~q~~~vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++++|+++++||+ +||+|+||||+|||||.++. +||+|+|||+|.|+|+|+. ++++.+|+..++++|.++|
T Consensus 111 ~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~-~~~~~de~~e~i~~~~~~l 189 (471)
T 3a32_A 111 NCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP-GGRVIDVVYDVFEEMKLVL 189 (471)
T ss_dssp SHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE-GGGHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcC-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999997633 8999999999999999864 5567778888888899999
Q ss_pred HH-hCC----cce--EeeCCC-----C------------------------------------------------c-C--
Q 015587 162 EE-FLA----VPV--IKGKKS-----E------------------------------------------------L-E-- 178 (404)
Q Consensus 162 ~~-l~~----ipv--~~g~~~-----~------------------------------------------------~-e-- 178 (404)
++ ||. -++ .+|..+ + . +
T Consensus 190 ~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~~~l~d~~ 269 (471)
T 3a32_A 190 ERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEE 269 (471)
T ss_dssp HHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCEEEEEEEEES
T ss_pred HHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccchhhCCCccceEEeccH
Confidence 99 874 144 333321 0 0 1
Q ss_pred ----cc----------------c--H-----------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEE
Q 015587 179 ----NS----------------K--F-----------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIP 213 (404)
Q Consensus 179 ----kf----------------~--F-----------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iip 213 (404)
++ + | |++++|++.|+ | .||+++||+||+|+|
T Consensus 270 ~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~G~~e~~~i~~~i~GgieRli~~lie~~~---g-~~p~~~ap~qv~Iip 345 (471)
T 3a32_A 270 SGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRR---G-RMPFTLAPIQFAVIA 345 (471)
T ss_dssp SSCEEEEEEEEEEEESSHHHHTTHHHHHHHHHCCSCEEEEEEEEEEEHHHHHHHHHHHTT---T-CCCGGGCSCSEEEEE
T ss_pred HhhhhhheeeeEEecccccccCCceEeccccCCceeeEEEeccccCcHHHHHHHHHHHhC---C-CCCCCcCCceEEEEE
Confidence 11 1 1 99999999874 3 899999999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeC-CCCCChhHHHHHHH-HcCCCEEEEECccccCCCeEEEEECCCCc--
Q 015587 214 VPYKDADTQGIFDACTATVEKLCEAGIRANSDF-RDNYSPGWKYSHWE-MKGVPLRIEIGPKDLANDQVRAVRRDNGA-- 289 (404)
Q Consensus 214 i~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~-~~~~s~g~k~~~ae-~~GvP~~iiIG~~E~~~~~V~v~~r~~~~-- 289 (404)
++.+++..++..++|.+|++.||++|++|++|+ ++ .++|+||++|+ ++|+|++|+||++|+++|+|+|++|++++
T Consensus 346 ~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~-~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~~q~ 424 (471)
T 3a32_A 346 VKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSK-TGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMK 424 (471)
T ss_dssp EECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEET-TTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTE
T ss_pred ccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCC-CCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCCccc
Confidence 974322235688999999999999999999999 77 59999999999 99999999999999999999999999998
Q ss_pred eeeechh-----hHHHHHHHHHHHHHHHHHHHHH
Q 015587 290 KIDLPRG-----SLVERVKELLEEVQESLFVAAK 318 (404)
Q Consensus 290 k~~v~~~-----el~~~i~~~l~~~~~~l~~~a~ 318 (404)
+..|+++ ++++.|.++|++||++|++.|-
T Consensus 425 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3a32_A 425 RRRLAIAYGDAADAVENLAAVAEELESPVRSLSG 458 (471)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEEeecccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999 9999999999999999999873
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-54 Score=453.60 Aligned_cols=290 Identities=20% Similarity=0.330 Sum_probs=261.9
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|. .+||++.|.++||+|+|+++ +.++||||
T Consensus 35 ~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~-~sG~~~~~~~~m~~~~d~~~----~~~~LrP~ 109 (572)
T 2j3l_A 35 VAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWK-ESGRYETYGPNLYRLKDRND----RDYILGPT 109 (572)
T ss_dssp EETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHH-HHSHHHHSCTTSCEEECTTC----CEEEECSC
T ss_pred cCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHH-hcCCccccchheEEEecCCC----CeEEEccc
Confidence 46999999999999999999999999999999999999999999995 57999999999999999887 89999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
+|++++++|+++++||++||+|+||+|+|||||.+|+.||+|+|||+|.|+|+||.+++++++|++.++++|.++|+.||
T Consensus 110 ~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lg 189 (572)
T 2j3l_A 110 HEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCG 189 (572)
T ss_dssp CHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999987678999999999999999999999999999999999999999986
Q ss_pred CcceEee-------------------------------------------------------------------------
Q 015587 166 AVPVIKG------------------------------------------------------------------------- 172 (404)
Q Consensus 166 ~ipv~~g------------------------------------------------------------------------- 172 (404)
+++.+.
T Consensus 190 -l~~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~l~~ 268 (572)
T 2j3l_A 190 -LEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEVAN 268 (572)
T ss_dssp -CCEEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCEEEECTTCCSHHHHHH
T ss_pred -CcEEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhcccccccccccccccceecCCCCCcHHHHHH
Confidence 332110
Q ss_pred ------------------------------------------C----------------------CC-----C-------
Q 015587 173 ------------------------------------------K----------------------KS-----E------- 176 (404)
Q Consensus 173 ------------------------------------------~----------------------~~-----~------- 176 (404)
. .+ .
T Consensus 269 ~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~~a~~~el~~~~g~~~g~~~p~gl~~~i~~~iD~ 348 (572)
T 2j3l_A 269 FFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADL 348 (572)
T ss_dssp HHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEECCHHHHHHHHSSCTTSCCSTTCCTTCEEEEET
T ss_pred HhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCccccCCHHHHHHhhCCCccccCCccCCCCCcEEEeh
Confidence 0 00 0
Q ss_pred -------------------------c---------------------------------------------Ccc------
Q 015587 177 -------------------------L---------------------------------------------ENS------ 180 (404)
Q Consensus 177 -------------------------~---------------------------------------------ekf------ 180 (404)
. +.|
T Consensus 349 sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~gg~~~~~~~ievg~~f~Lg~~ys~~~~~~~~~ 428 (572)
T 2j3l_A 349 AVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLD 428 (572)
T ss_dssp TTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSSSBEEEEEEEEEEEEEEEETHHHHHHTCEEEC
T ss_pred hhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccCCcceeccceEEEEEeccCcccccccCCEEEC
Confidence 0 011
Q ss_pred -----------cH-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEE
Q 015587 181 -----------KF-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244 (404)
Q Consensus 181 -----------~F-----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~ 244 (404)
.| |++++|++.|+|++|+.||+++||+||+|+|++.++ ++..++|.+|++.||++|++|++
T Consensus 429 ~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~---~~~~~~a~~l~~~Lr~~gi~v~~ 505 (572)
T 2j3l_A 429 ENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKD---EYQTKLSQEVEAMMTEAGYEVLV 505 (572)
T ss_dssp TTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTC---HHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEeeeeeccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCC---HHHHHHHHHHHHHHHhCCCeEEE
Confidence 01 999999999999999999999999999999997432 56889999999999999999999
Q ss_pred eCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 245 D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
|+++ .++|+||++|++.|+|++|+||++| ++|+|+||+|++++|..++++++++.++ +++
T Consensus 506 d~~~-~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~~~ 565 (572)
T 2j3l_A 506 DDRN-ERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEELESTLS-ILM 565 (572)
T ss_dssp ECSS-CCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHHHHHHH-HHC
T ss_pred eCCC-CCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHHHHHHH-HHh
Confidence 9997 5999999999999999999999999 9999999999999999999999998887 654
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-52 Score=441.96 Aligned_cols=286 Identities=16% Similarity=0.279 Sum_probs=253.5
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|.+ +|||+.|.++||+++|.++. +.++||||+
T Consensus 260 ~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~-sG~~d~~~~~mf~~~d~~~~---~~~~LrP~~ 335 (645)
T 1nyr_A 260 GAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKT-SGHWDHYQEDMFPPMQLDET---ESMVLRPMN 335 (645)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHH-HTHHHHCTTSSCCCEEETTT---EEEEECSSS
T ss_pred CCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhh-CCCccccccCcceeEecCCC---eEEEeCCCC
Confidence 68999999999999999999999999999999999999999999965 79999999999999887641 689999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
|++++++|+++++||++||+|+||+|+|||||.+ +.+||+|+|||+|.|+|+|+ +++++.+|+..+++++.++|+.||
T Consensus 336 ~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~-~~~~~~d~~~e~i~~~~~~l~~lG 414 (645)
T 1nyr_A 336 CPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFV-RPDQIKEEFKRVVNMIIDVYKDFG 414 (645)
T ss_dssp HHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEc-CHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999976 34799999999999999966 567777788889999999999998
Q ss_pred Ccce--EeeCCCC------------cC----------------------------------------cc--------cH-
Q 015587 166 AVPV--IKGKKSE------------LE----------------------------------------NS--------KF- 182 (404)
Q Consensus 166 ~ipv--~~g~~~~------------~e----------------------------------------kf--------~F- 182 (404)
.-++ .++.++. |+ +. ||
T Consensus 415 l~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~lg~~~~~gtiq~D~~ 494 (645)
T 1nyr_A 415 FEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFL 494 (645)
T ss_dssp CCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCTTSCCEEEEEEEEESS
T ss_pred CCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhhhCchhhcceEEeecc
Confidence 5344 2222210 00 00 11
Q ss_pred -------------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHH
Q 015587 183 -------------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTAT 231 (404)
Q Consensus 183 -------------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i 231 (404)
|++++|+++|+ ..||+|+||+||+|+|++. ++..++|.+|
T Consensus 495 l~~~~d~~Y~~~~g~~~~P~~ih~~~~GgieR~i~~liE~~~----~~~P~~lap~qv~vip~~~-----~~~~~~a~~i 565 (645)
T 1nyr_A 495 LPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETK----GAFPTWLAPKQVQIIPVNV-----DLHYDYARQL 565 (645)
T ss_dssp HHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHT----TCCCTTTCSSCEEEEESSH-----HHHHHHHHHH
T ss_pred cccccceEEECCCCCccCcEEEEeccCCcHHHHHHHHHHHhc----CCCCCCCCCceEEEEEccc-----HHHHHHHHHH
Confidence 99999999874 3899999999999999971 4688999999
Q ss_pred HHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 232 VEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 232 ~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
++.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.|.++++
T Consensus 566 ~~~Lr~~Gi~v~~D~~~-~~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~ 640 (645)
T 1nyr_A 566 QDELKSQGVRVSIDDRN-EKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIR 640 (645)
T ss_dssp HHHHHTTTCCEEECCSS-CCHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHh
Confidence 99999999999999997 5999999999999999999999999999999999999999999999999998877664
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-51 Score=421.86 Aligned_cols=295 Identities=19% Similarity=0.236 Sum_probs=254.5
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHH--hcCceEeccCcccChhhHhhhcccccCcccceEEEEe-----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK--KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK----------- 70 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~--~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~----------- 70 (404)
|+.++|+++|+|.|.+++++|++++++.+. ++||++|.||+|.+.++| +.||||+.|.++||.+.+
T Consensus 25 ~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~-~~SGh~~~f~d~m~~~~~~~~~~r~d~l~ 103 (505)
T 1ati_A 25 YGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVL-HYSGHEATFADPMVDNRITKKRYRLDHLL 103 (505)
T ss_dssp GTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHH-HHTSHHHHCEEEEEEC-------------
T ss_pred cCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHH-HhcCChhhcCccceeccccccccchhhhh
Confidence 456799999999999999999999999998 999999999999999999 569999999999987421
Q ss_pred -------------------------------------------------cCC---------------------CCCCCce
Q 015587 71 -------------------------------------------------SGE---------------------SDLEVPI 80 (404)
Q Consensus 71 -------------------------------------------------~g~---------------------~~l~~~l 80 (404)
.|+ .+.++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~ 183 (505)
T 1ati_A 104 KEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLA 183 (505)
T ss_dssp -------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEE
T ss_pred hhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCccccccce
Confidence 010 0002568
Q ss_pred eccCCChhHHHHHHHhhhccC-CCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGH-RDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~-~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
+|||++|++++..|++++.|| ++||+++||+|+|||||.+|+.||+|+|||+|.|+| ++++++++.+++..++++|.+
T Consensus 184 ~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~~~~~ 262 (505)
T 1ati_A 184 YLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVEERLK 262 (505)
T ss_dssp EECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHHHHHH
T ss_pred eecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEECHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999888899999999999999 588999999999999999999
Q ss_pred HHHHhCCcc---eEe-eC-------------------------------CC--------C---------------cCccc
Q 015587 160 IYEEFLAVP---VIK-GK-------------------------------KS--------E---------------LENSK 181 (404)
Q Consensus 160 ~~~~l~~ip---v~~-g~-------------------------------~~--------~---------------~ekf~ 181 (404)
+|+.||. | +.. +. .+ . ..+|+
T Consensus 263 i~~~LGl-~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~~~~~d~~L~~~~~~~~~~~~~~~~~~n~~~~~~ 341 (505)
T 1ati_A 263 WWQEMGL-SRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQR 341 (505)
T ss_dssp HHHHTTC-CGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHCSSTTTTTCCSCCCCCSCCCSC
T ss_pred HHHHcCC-CeEEEEECCCChHhhhcccHHHHhHHhhcCCCCccchhhhcccceecchhhccccccceeeeecccccceeE
Confidence 9999974 3 110 00 00 0 01111
Q ss_pred H-----------------------HHHHHHHHHc--------CC-CCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHH
Q 015587 182 F-----------------------VQIGVMVMVH--------GD-DKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACT 229 (404)
Q Consensus 182 F-----------------------Rli~~Lie~~--------~d-~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~ 229 (404)
| |++++|++.| +| +.|+.||+++||+||+|+|++.++ ++..++|.
T Consensus 342 ~~y~d~~g~~~y~p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~---~~~~~~a~ 418 (505)
T 1ati_A 342 LAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNR---PEITEYAK 418 (505)
T ss_dssp CCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSC---HHHHHHHH
T ss_pred EEEEcCCCCeeecceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCcc---HHHHHHHH
Confidence 1 9999999986 55 678899999999999999997522 57889999
Q ss_pred HHHHHHhhCC-CEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccC---------CCeEEEEECCCCceeeechhhHH
Q 015587 230 ATVEKLCEAG-IRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA---------NDQVRAVRRDNGAKIDLPRGSLV 299 (404)
Q Consensus 230 ~i~~~Lr~~G-irv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~---------~~~V~v~~r~~~~k~~v~~~el~ 299 (404)
+|++.||++| ++|.+|++ . ++|+||++|++.|+|++|+||++|++ +|+|+||+|++++|..|++++++
T Consensus 419 ~l~~~Lr~~G~i~v~~D~~-~-sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~~q~~v~~~el~ 496 (505)
T 1ati_A 419 RLKARLLALGLGRVLYEDT-G-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELE 496 (505)
T ss_dssp HHHHHHHTTCSSCEEECCC-S-CHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHH
T ss_pred HHHHHHhccCCEEEEECCC-C-CHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCCceEEEEHHHHH
Confidence 9999999999 99999998 4 99999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHH
Q 015587 300 ERVKELL 306 (404)
Q Consensus 300 ~~i~~~l 306 (404)
+.|.+++
T Consensus 497 ~~l~~~l 503 (505)
T 1ati_A 497 GFLRERL 503 (505)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887654
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=428.87 Aligned_cols=311 Identities=20% Similarity=0.237 Sum_probs=257.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecCC---------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE--------- 73 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~--------- 73 (404)
|++++|++||+|.|+++|++|++++++.|. ..||++|.||+|.|.++| +.||||+.|.++|+.+.+.+.
T Consensus 87 y~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lw-k~SGH~~~f~d~m~~~~~~~e~yr~D~l~e 165 (693)
T 2zt5_A 87 YGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVL-KTSGHVDKFADFMVKDVKNGECFRADHLLK 165 (693)
T ss_dssp GTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHH-HHHTHHHHCEEEEEEBSSSCCEEEHHHHHH
T ss_pred cCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHH-hhcCCcccccccceeeccCCceeeccHhHH
Confidence 567899999999999999999999999998 569999999999999999 579999999986665433220
Q ss_pred ---------------------------C-----------------------------------------CCCCceeccCC
Q 015587 74 ---------------------------S-----------------------------------------DLEVPIAIRPT 85 (404)
Q Consensus 74 ---------------------------~-----------------------------------------~l~~~l~LRPt 85 (404)
. .-++.++|||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPE 245 (693)
T 2zt5_A 166 AHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPE 245 (693)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSC
T ss_pred HHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccc
Confidence 0 01378999999
Q ss_pred ChhHHHHHHHhhhcc-CCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhH------------------
Q 015587 86 SETVMYPYFSKWIRG-HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA------------------ 146 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s-~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a------------------ 146 (404)
.+.+++..|++++.+ |++||+++||||++||||.+|+.||+|+|||+|+|+|+|+...+..
T Consensus 246 taqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~ 325 (693)
T 2zt5_A 246 TAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAK 325 (693)
T ss_dssp SHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHH
T ss_pred cchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhh
Confidence 999999999999987 7899999999999999999999999999999999999987544321
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHhCCcc--eEe------------------------------
Q 015587 147 -----------------------DDEVLQILELYRRIYEEFLAVP--VIK------------------------------ 171 (404)
Q Consensus 147 -----------------------~~e~~~~~~~y~~~~~~l~~ip--v~~------------------------------ 171 (404)
.+++..++..+.++|..+|.-+ +..
T Consensus 326 ~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~ 405 (693)
T 2zt5_A 326 AQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIV 405 (693)
T ss_dssp HHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEE
T ss_pred hhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHH
Confidence 1335556667778888887411 100
Q ss_pred e--CCCC-------------cC----------------------------------------------------------
Q 015587 172 G--KKSE-------------LE---------------------------------------------------------- 178 (404)
Q Consensus 172 g--~~~~-------------~e---------------------------------------------------------- 178 (404)
| .+++ ..
T Consensus 406 ~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~ 485 (693)
T 2zt5_A 406 GCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGE 485 (693)
T ss_dssp EEECCCSHHHHHHHHHHTCCCCEEEC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 0 0000 00
Q ss_pred --------cc----------------------------cH---HHHHHHHHHcCC-----CC--CCCCCCCCCCceEEEE
Q 015587 179 --------NS----------------------------KF---VQIGVMVMVHGD-----DK--GLMLPPKVASVQVIVI 212 (404)
Q Consensus 179 --------kf----------------------------~F---Rli~~Lie~~~d-----~~--Gl~lP~~iap~qV~Ii 212 (404)
.| .| |++++|++.|.| +. |+.||+++||+||+|+
T Consensus 486 i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV~Vi 565 (693)
T 2zt5_A 486 FTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVL 565 (693)
T ss_dssp --------------------------CCEEECCEEEEEEEEHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSSCSEEEE
T ss_pred EEEEECCEEEEecccccceeeEEeccCCcEecCcceeCeehHHHHHHHHHHHhccccccccccccccCCCCCCCCeEEEE
Confidence 01 01 999999998665 45 8899999999999999
Q ss_pred EecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECcccc--CCCeEEEEECCCCce
Q 015587 213 PVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDL--ANDQVRAVRRDNGAK 290 (404)
Q Consensus 213 pi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~--~~~~V~v~~r~~~~k 290 (404)
|++.+ ++..++|.+|++.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+ ++|+|+||+|++++|
T Consensus 566 pl~~~----~~~~~~A~~l~~~Lr~~Gi~v~~D~~~-~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~eq 640 (693)
T 2zt5_A 566 PLSQN----QEFMPFVKELSEALTRHGVSHKVDDSS-GSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQ 640 (693)
T ss_dssp ESCCS----TTTHHHHHHHHHHHHHTTCCEEECCCC-SCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTCCE
T ss_pred EecCc----HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCCce
Confidence 99742 357899999999999999999999987 59999999999999999999999999 999999999999999
Q ss_pred eeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhc
Q 015587 291 IDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALG 339 (404)
Q Consensus 291 ~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~ 339 (404)
..++++++++.|.++++. ..||+|+.+.+-
T Consensus 641 ~~v~l~el~~~l~~~l~~-------------------~~~w~~~~~~~~ 670 (693)
T 2zt5_A 641 IRAEISELPSIVQDLANG-------------------NITWADVEARYP 670 (693)
T ss_dssp EEEETTTHHHHHHHHHTT-------------------SSCHHHHHHHSC
T ss_pred EEEeHHHHHHHHHHHHhC-------------------cccHHHHHHhcc
Confidence 999999999888765542 588999999884
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-48 Score=392.93 Aligned_cols=282 Identities=12% Similarity=0.127 Sum_probs=242.7
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccc-ccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~-~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+++.+++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|| ++.+.++||+|+|++| +.
T Consensus 1 ~m~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g----~~ 76 (423)
T 1htt_A 1 AKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNG----DS 76 (423)
T ss_dssp --CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTS----CE
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCC----CE
Confidence 346889999999999999999999999999999999999999999999999876687 8889999999999988 99
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|+.++++++++ .+|+++|+|+||+|+|||+| +|+.| |+|||+|.|+|++|.+.+.||+|++.+ +.+
T Consensus 77 l~Lrpd~t~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e-~p~~g--R~Ref~Q~d~e~~g~~~~~ad~e~i~~---~~~ 149 (423)
T 1htt_A 77 LTLRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHE-RPQKG--RYRQFHQLGCEVFGLQGPDIDAELIML---TAR 149 (423)
T ss_dssp EEECSCSHHHHHHHHHHH-TCSTTCCEEEEEEEEEECCC-CCCSS--CCSEEEEEEEEEESCCSHHHHHHHHHH---HHH
T ss_pred EEeCCCchHHHHHHHHhc-ccccCCCeEEEEEcCEecCC-CCCCC--ccceeEEeeEEEECCCCchhhHHHHHH---HHH
Confidence 999999999999999877 46789999999999999999 78889 999999999999999999999998654 468
Q ss_pred HHHHhCC-cce--EeeCC-------------------------C--------------C-----cCcc------------
Q 015587 160 IYEEFLA-VPV--IKGKK-------------------------S--------------E-----LENS------------ 180 (404)
Q Consensus 160 ~~~~l~~-ipv--~~g~~-------------------------~--------------~-----~ekf------------ 180 (404)
+|+.+|. -.+ .+|.. + + ...+
T Consensus 150 ~l~~lgl~~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~ 229 (423)
T 1htt_A 150 WWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLD 229 (423)
T ss_dssp HHHHHTCGGGCEEEEEECCCHHHHHHC---------------------------------------------------CC
T ss_pred HHHHCCCCCCcEEEEcCCCChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhh
Confidence 8888874 122 11110 0 0 0000
Q ss_pred -----------------------c----------------------------------------H---------------
Q 015587 181 -----------------------K----------------------------------------F--------------- 182 (404)
Q Consensus 181 -----------------------~----------------------------------------F--------------- 182 (404)
| |
T Consensus 230 ~~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pavGf~igve 309 (423)
T 1htt_A 230 EESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLE 309 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeEEEEecHH
Confidence 0 0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhC--CCEEEEeCCCCCChhHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEA--GIRANSDFRDNYSPGWKYSHWE 260 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~--Girv~~D~~~~~s~g~k~~~ae 260 (404)
|++++|.+. |. +||+.+|+||+|+|++. +..++|.++++.||++ |++|++|+++ .++|+||++|+
T Consensus 310 Rl~~~l~e~-----~~-~~~~~~p~~v~i~~~~~------~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~-~~~~~~~~~a~ 376 (423)
T 1htt_A 310 RLVLLVQAV-----NP-EFKADPVVDIYLVASGA------DTQSAAMALAERLRDELPGVKLMTNHGG-GNFKKQFARAD 376 (423)
T ss_dssp HHHHHHHHH-----ST-TCCCCCSCSEEEEECST------THHHHHHHHHHHHHHHSTTCCEEECCSC-CCHHHHHHHHH
T ss_pred HHHHHHHhc-----Cc-CCCCCCCCcEEEEEcCH------HHHHHHHHHHHHHHcCCCCcEEEEeCCC-CCHHHHHHHHH
Confidence 888888774 33 45556999999999873 4678999999999999 9999999987 59999999999
Q ss_pred HcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 261 MKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 261 ~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
+.|+|++|+||++|+++|+|+||+|+++++..++++++++.+++++
T Consensus 377 ~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 377 KWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp HHTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred HcCCCEEEEECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887664
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=385.70 Aligned_cols=280 Identities=15% Similarity=0.127 Sum_probs=240.1
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccc-ccCcccceEEEEecCCCCCCCcee
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~-~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
.+..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|| |+.+.++||+|+|++| +.++
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g----~~l~ 77 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGG----RSLT 77 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCC----CEEe
Confidence 4688999999999999999999999999999999999999999999999876687 8999999999999988 9999
Q ss_pred ccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
|||+.|+.++++++.+..+++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+||.+.+.||+|++.++ .++|
T Consensus 78 Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e-~p~~g--R~REf~Q~g~e~~g~~~~~ad~e~i~~~---~~~l 151 (421)
T 1h4v_B 78 LRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAE-RPQKG--RYRQFHQVNYEALGSENPILDAEAVVLL---YECL 151 (421)
T ss_pred eCCcchHHHHHHHHhccccccCCCeEEEEecCeecCC-CCCCC--CcccEEEccEEEECCCChhhhHHHHHHH---HHHH
Confidence 9999999999999988778889999999999999999 77889 9999999999999999999999987654 4666
Q ss_pred HHhCCc--ceEeeC-------------------------------------------CC----------CcC--------
Q 015587 162 EEFLAV--PVIKGK-------------------------------------------KS----------ELE-------- 178 (404)
Q Consensus 162 ~~l~~i--pv~~g~-------------------------------------------~~----------~~e-------- 178 (404)
+.+|.- .+.+|. +. ...
T Consensus 152 ~~lgl~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 231 (421)
T 1h4v_B 152 KELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGE 231 (421)
T ss_pred HHcCCCceEEEEcCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhH
Confidence 665521 011110 00 000
Q ss_pred ------------------cc------------------------------------------cH---------------H
Q 015587 179 ------------------NS------------------------------------------KF---------------V 183 (404)
Q Consensus 179 ------------------kf------------------------------------------~F---------------R 183 (404)
.+ .| |
T Consensus 232 ~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa~Gf~igieR 311 (421)
T 1h4v_B 232 EARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVER 311 (421)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCeEEEeecHHH
Confidence 00 01 7
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcC
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKG 263 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~G 263 (404)
++++|.+. |. +||+.+|+||+|+|++ ++..++|.++++.||++ ++|++|+++ .++|+||++|++.|
T Consensus 312 l~~~l~e~-----~~-~~~~~~p~~v~i~~~~------~~~~~~a~~l~~~Lr~~-i~v~~d~~~-~~~~~~~~~a~~~g 377 (421)
T 1h4v_B 312 VALALEAE-----GF-GLPEEKGPDLYLIPLT------EEAVAEAFYLAEALRPR-LRAEYALAP-RKPAKGLEEALKRG 377 (421)
T ss_pred HHHHHHhc-----Cc-CCCCCCCCeEEEEECC------hHHHHHHHHHHHHHHhc-CEEEEecCC-CCHHHHHHHHHhCC
Confidence 77777663 33 4566799999999987 35778999999999999 999999987 59999999999999
Q ss_pred CCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 264 VPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 264 vP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
+|++|+||++|+++|+|+||+|+++++..++++++++.++++|
T Consensus 378 ~p~~iivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 378 AAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred CCEEEEECchHhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887664
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=387.22 Aligned_cols=280 Identities=15% Similarity=0.169 Sum_probs=238.7
Q ss_pred CccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccc-ccCcccceEEEEecC-CCCCCCc
Q 015587 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSG-ESDLEVP 79 (404)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~-~~~f~~e~~~~~~~g-~~~l~~~ 79 (404)
..+.+++|++||+|.++++|+.|++.+++.|+++||++|.||+|++.++|.+..|| ++.+.++||.|.|++ | +.
T Consensus 30 ~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g----~~ 105 (467)
T 4e51_A 30 EKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNG----EN 105 (467)
T ss_dssp CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTC----CE
T ss_pred cCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCC----CE
Confidence 35788999999999999999999999999999999999999999999999887698 788999999999998 7 89
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|+.++++++.+..+| ++|+|+||+|+|||+| +|+.| |+|||+|.|+|+|+.+.+.+|+|++.++ .+
T Consensus 106 l~LRPd~t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E-~~~~g--R~ReF~Q~d~ei~g~~~~~adaEvi~l~---~~ 178 (467)
T 4e51_A 106 LTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYRQFHQVGVEALGFAGPDADAEIVMMC---QR 178 (467)
T ss_dssp EEECSCSHHHHHHHHHHTTTTT-TSCEEEEEEEEEECCC-CC-----CCSEEEEEEEEEETCCCSHHHHHHHHHH---HH
T ss_pred EEeCcccHHHHHHHHHHccccc-CCCEEEEEEccEEccC-CCCCC--CcCceEEEEEEEEeCCChHHHHHHHHHH---HH
Confidence 9999999999999999988888 6999999999999999 67888 9999999999999999999998887766 58
Q ss_pred HHHHhCCcce--EeeCCC------------------------------------------------------Cc------
Q 015587 160 IYEEFLAVPV--IKGKKS------------------------------------------------------EL------ 177 (404)
Q Consensus 160 ~~~~l~~ipv--~~g~~~------------------------------------------------------~~------ 177 (404)
+|+.+|.-.+ .+|... ..
T Consensus 179 ~l~~lGl~~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~ 258 (467)
T 4e51_A 179 LWEDLGLTGIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGD 258 (467)
T ss_dssp HHHHHTCCCEEEEEEECCCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCH
T ss_pred HHHHcCCCceEEEEeCCCchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhH
Confidence 8888874222 222100 00
Q ss_pred ---Ccc------------------------c--------------------------------H---------------H
Q 015587 178 ---ENS------------------------K--------------------------------F---------------V 183 (404)
Q Consensus 178 ---ekf------------------------~--------------------------------F---------------R 183 (404)
+.+ + | |
T Consensus 259 ~~~~~l~~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~PavGfa~gleR 338 (467)
T 4e51_A 259 VSRAHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAMGIER 338 (467)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCceeehHHHHH
Confidence 000 0 0 9
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC----CCCChhHHHHHH
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR----DNYSPGWKYSHW 259 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~----~~~s~g~k~~~a 259 (404)
++.+|.+. |. +|. .+|.||+|+|++ ++...+|.++++.||++|++|++|.+ + .++++|+++|
T Consensus 339 l~~~l~~~-----~~-~~~-~~p~~V~Vip~~------~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~-~sl~kq~~~A 404 (467)
T 4e51_A 339 ILELLKEE-----HL-VPE-QEGVDVYVVHQG------DAAREQAFIVAERLRDTGLDVILHCSADGAG-ASFKSQMKRA 404 (467)
T ss_dssp HHHHHHHT-----TC-CCC-CCCCSEEEEECS------HHHHHHHHHHHHHHHHTTCCEEECCCTTSSC-CCHHHHHHHH
T ss_pred HHHHHHhc-----CC-ccc-CCCCeEEEEEcC------hHHHHHHHHHHHHHHHcCCeEEEEccccccc-CCHHHHHHHH
Confidence 99888873 32 444 789999999987 46788999999999999999999998 5 6999999999
Q ss_pred HHcCCCEEEEECccccCCCeEEEEECCC-C------ceeeechhhHHHHHHHHH
Q 015587 260 EMKGVPLRIEIGPKDLANDQVRAVRRDN-G------AKIDLPRGSLVERVKELL 306 (404)
Q Consensus 260 e~~GvP~~iiIG~~E~~~~~V~v~~r~~-~------~k~~v~~~el~~~i~~~l 306 (404)
++.|+|++|+||++|+++|+|+||+|++ + ++..++++++++.|++.+
T Consensus 405 ~~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 405 DASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp HHTTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred HHcCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 9999999999999999999999999999 8 999999999999887766
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=383.03 Aligned_cols=277 Identities=17% Similarity=0.238 Sum_probs=227.1
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhc-ccccCcccceEEEEecCCCCCCCceec
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEK-DHIEGFAPEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~-g~~~~f~~e~~~~~~~g~~~l~~~l~L 82 (404)
+..++|+++|+|.|+++|++|++++++.|.++||++|.||+|++.++|.+.. +|++.|.++||+|+|++| +.++|
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g----~~~~L 77 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGD----RSITL 77 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHH----CCEEE
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCC----CEEEe
Confidence 5789999999999999999999999999999999999999999999997643 799999999999999887 89999
Q ss_pred cCCChhHHHHHHHhhhccC-CCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGH-RDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~-~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
|||+|++++++++++..|| ++||+|+||+|+|||+| +|+.| |+|||+|.|+|+||.+.+.+|+|++.++ .++|
T Consensus 78 rp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E-~~~~g--R~reF~q~~~e~~~~~~~~~d~e~i~~~---~~~l 151 (420)
T 1qe0_A 78 RPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYE-RKQKG--RYRQFNQFGVEAIGAENPSVDAEVLAMV---MHIY 151 (420)
T ss_dssp CSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC----------CCEEEEEEEEEESCCCHHHHHHHHHHH---HHHH
T ss_pred CCCChHHHHHHHHhccccccCCCCeEEEEecCEeecC-CCcCC--CcccEEEeeEEEECCCCchhHHHHHHHH---HHHH
Confidence 9999999999999998898 89999999999999999 67877 9999999999999999999998887766 4677
Q ss_pred HHhCCcce--EeeC------------------------------------------------CCCcC-------------
Q 015587 162 EEFLAVPV--IKGK------------------------------------------------KSELE------------- 178 (404)
Q Consensus 162 ~~l~~ipv--~~g~------------------------------------------------~~~~e------------- 178 (404)
+.+|.-.+ .+|. ..-++
T Consensus 152 ~~lgl~~~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~ 231 (420)
T 1qe0_A 152 QSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEES 231 (420)
T ss_dssp HHTTCCCEEEEEEECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTH
T ss_pred HHcCCCceEEEEcccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHH
Confidence 77663111 1110 00000
Q ss_pred --------------------------------------------------------cc-----cH---------------
Q 015587 179 --------------------------------------------------------NS-----KF--------------- 182 (404)
Q Consensus 179 --------------------------------------------------------kf-----~F--------------- 182 (404)
+| .|
T Consensus 232 ~~~l~~l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~vg~~igve 311 (420)
T 1qe0_A 232 KAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIE 311 (420)
T ss_dssp HHHHHHHHHHHHHHTCCCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEEEEEEEEHH
T ss_pred HHHHHHHHHHHHHcCCeEEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCEEEEEecHH
Confidence 00 01
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHc
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMK 262 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~ 262 (404)
|++++| +. .|+.||+ ++|+||+|+|++ ++..++|.++++.||++|++|++|+++ .++|+|+++|++.
T Consensus 312 Rl~~~l-e~----~~~~~p~-~~p~~v~i~~~~------~~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~~~~~a~~~ 378 (420)
T 1qe0_A 312 RLLLAL-EE----EGIELDI-EENLDLFIVTMG------DQADRYAVKLLNHLRHNGIKADKDYLQ-RKIKGQMKQADRL 378 (420)
T ss_dssp HHHHHH-HH----TTCCCCC-CCCCSEEEEECH------HHHHHHHHHHHHHHHTTTCCEEECCSC-CCHHHHHHHHHHT
T ss_pred HHHHHH-Hh----cCCCCCC-CCCCeEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHHHc
Confidence 999887 43 4678888 899999999986 357789999999999999999999987 5999999999999
Q ss_pred CCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015587 263 GVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 263 GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~ 303 (404)
|+|++|+||++|+++|+|+||+|+++++..++++++++.++
T Consensus 379 g~p~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 379 GAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp TCSEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred CCCEEEEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=397.02 Aligned_cols=297 Identities=14% Similarity=0.068 Sum_probs=236.1
Q ss_pred CCCccE-EeCchHHHHHHHHHHHHHHHH--HhcCceEeccCcccChhhHhhh-ccc---ccCcccc----------eEEE
Q 015587 6 DISGCY-IMRPWAISIWETMQKFFDAEI--KKMKIQNCYFPLFVSPTVLQKE-KDH---IEGFAPE----------VAWV 68 (404)
Q Consensus 6 ~~~G~~-~~~P~g~~i~~~i~~~~~~~~--~~~G~~~i~~P~l~~~~l~~k~-~g~---~~~f~~e----------~~~~ 68 (404)
+++|++ +|+|.|+.||++|++++++.+ .+.|+++|+||++.|.++|.++ +|| ++.+.++ |+..
T Consensus 49 ~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~ 128 (454)
T 1g5h_A 49 LLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAF 128 (454)
T ss_dssp HHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHH
T ss_pred CCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHH
Confidence 467988 999999999999999888874 5899999999999999999652 266 7777655 2211
Q ss_pred EecCCCCCCCceeccCCChhHHHHHHHhhhccCC-CCCeEEEeeeceee---cCCCCCCCccccceeEEeceeeecCChh
Q 015587 69 TKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVR---WEFSNPTPFIRSREFLWQEGHTAFATKS 144 (404)
Q Consensus 69 ~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR---~E~~~~~gllR~REF~q~e~~~~~~~~~ 144 (404)
.. +.++++++|||+++++++.+|+++++||+ +||++++|||+||| +|.+|..||+|+|||+|+|+|+ +++++
T Consensus 129 ~~---~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe 204 (454)
T 1g5h_A 129 LE---NLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTR 204 (454)
T ss_dssp HH---HHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHH
T ss_pred HH---hhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHh
Confidence 00 00136899999999999999999999998 99999999999999 5998877999999999999998 57899
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcc--eEe--------------------------e--CCC--------CcCccc-----
Q 015587 145 EADDEVLQILELYRRIYEEFLAVP--VIK--------------------------G--KKS--------ELENSK----- 181 (404)
Q Consensus 145 ~a~~e~~~~~~~y~~~~~~l~~ip--v~~--------------------------g--~~~--------~~ekf~----- 181 (404)
++.+++..+++.+..+|++||.-| +.. | .++ ..++|+
T Consensus 205 ~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~~~~~~a~~~~~ie~~~p~g~~e~~g~~~~td~~l~~~~~~s~~~l~y~d 284 (454)
T 1g5h_A 205 TSSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQDELGRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRD 284 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSGGGEEEEEEECTTSCEEEEEEEEETTEEEEEEEEEEEESHHHHHHSTTCGGGSCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeEEecCCHHHHHhcCCCcEEecCCCceEEEEecCCCHHHHHhccCCceeeEEEEC
Confidence 999999999999999999987422 210 0 000 011120
Q ss_pred -------------H---HHHHHHHHHcCC----------C---CCCCCCCCCCCceEEEE-EecCCCCChhhHHHHHHHH
Q 015587 182 -------------F---VQIGVMVMVHGD----------D---KGLMLPPKVASVQVIVI-PVPYKDADTQGIFDACTAT 231 (404)
Q Consensus 182 -------------F---Rli~~Lie~~~d----------~---~Gl~lP~~iap~qV~Ii-pi~~~~~~~~~~~~~a~~i 231 (404)
+ |+++++++.+.+ | .|++||+++||+||+|+ |++. .++..++|.+|
T Consensus 285 ~~~~~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~----~e~~~~~A~~l 360 (454)
T 1g5h_A 285 GRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGP----TVELRQVCQGL 360 (454)
T ss_dssp TTEEECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSC----HHHHHHHHHHH
T ss_pred CCCcEeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCC----cHHHHHHHHHH
Confidence 0 998777665522 2 46899999999999999 5431 15688999999
Q ss_pred HHHHhhCCCEEE--EeCC-CCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 232 VEKLCEAGIRAN--SDFR-DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 232 ~~~Lr~~Girv~--~D~~-~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
++.|+++|++|+ +|++ + .++|+||++|++.|+|++|+||++|+++|+|+||+|++++|..++++++++.|.++++.
T Consensus 361 ~~~Lr~~Gi~v~~~~Ddr~~-~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~~ 439 (454)
T 1g5h_A 361 LNELLENGISVWPGYSETVH-SSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLAS 439 (454)
T ss_dssp HHHHHHTTCCEEEGGGSCCC-SCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEecCCCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhc
Confidence 999999999996 8987 5 59999999999999999999999999999999999999999999999999999988876
Q ss_pred HHH
Q 015587 309 VQE 311 (404)
Q Consensus 309 ~~~ 311 (404)
+|.
T Consensus 440 ~~~ 442 (454)
T 1g5h_A 440 ASN 442 (454)
T ss_dssp HHH
T ss_pred cch
Confidence 653
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=377.65 Aligned_cols=278 Identities=13% Similarity=0.037 Sum_probs=226.7
Q ss_pred CCCCccE-EeCchHHHHHHHHHHHHHHHHH-hcC-ceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCcee
Q 015587 5 YDISGCY-IMRPWAISIWETMQKFFDAEIK-KMK-IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 5 ~~~~G~~-~~~P~g~~i~~~i~~~~~~~~~-~~G-~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
+.+.|++ +|+|.|+.|+++|++.+++.+. +.| +.+|+||+. ++| +.||||+.|. ++
T Consensus 90 ~~~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~---~~~-~~SGH~d~~~-----------------~~ 148 (459)
T 3ikl_A 90 SLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHH---KPG-PLLPGDSAFR-----------------GG 148 (459)
T ss_dssp HHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSB---CCS-CCCSSCSCCT-----------------TB
T ss_pred CCccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeeccccc---ccc-ccCcchhhhc-----------------ce
Confidence 4577888 9999999999999996655554 355 778999994 446 6799999986 88
Q ss_pred ccCCChhHHHHHHHhhhccCC-CCCeEEEeeeceeecCC---CCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEF---SNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR~E~---~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
|||++++++...|++++.||+ +||+++.|+|+|||+|. .+.+||+|+|||+|.|+|. +++++++.+++..+++..
T Consensus 149 LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 149 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp -CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999994 5677999999999999997 789999999999999888
Q ss_pred HHHHHHhCCcc---eEeeCC--C-Cc--------------------------------------------Ccc-------
Q 015587 158 RRIYEEFLAVP---VIKGKK--S-EL--------------------------------------------ENS------- 180 (404)
Q Consensus 158 ~~~~~~l~~ip---v~~g~~--~-~~--------------------------------------------ekf------- 180 (404)
..+|..|| +| +..... . .. ++|
T Consensus 228 ~~~~~~LG-i~~~~~r~~~~~~eeA~~~~DiE~~~p~G~~E~~g~sn~tDfqL~~~~~~~~~~~~~~dg~~k~~P~vi~~ 306 (459)
T 3ikl_A 228 LQWWRKFA-MSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSV 306 (459)
T ss_dssp HHHHHHHC-SSGGGEEEEEECCSSSSCEEEEEEECSSCEEEEEEEEEEETHHHHHHSCSCSSSSCCBSSSCBCCCEEEEE
T ss_pred HHHHHHhC-CChhhEEEeecCchHHHhhcCeEEEcCCceEEEeeeeccchhhhhccccccCceeEccCCCeeeeeEEEEe
Confidence 89999997 44 211000 0 00 000
Q ss_pred cH---HHHHHHHHHcCCCCC-------------CCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEE-
Q 015587 181 KF---VQIGVMVMVHGDDKG-------------LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN- 243 (404)
Q Consensus 181 ~F---Rli~~Lie~~~d~~G-------------l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~- 243 (404)
.+ |++.++++.+-|+.| ++||+++||+||+|+ +..++ .+++.++|.+|++.|+++||+|+
T Consensus 307 s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Ii-i~~~~--~e~~~~~A~~L~~~Lr~~GIrV~~ 383 (459)
T 3ikl_A 307 NGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALD-VGRGP--TLELRQVCQGLFNELLENGISVWP 383 (459)
T ss_dssp EEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEE-ESSCC--STTHHHHHHHHHHHHHHTSCCEEC
T ss_pred cccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEE-eCCCC--CHHHHHHHHHHHHHHHHCCCeEEE
Confidence 00 999888888777665 999999999999999 65321 25689999999999999999999
Q ss_pred -EeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 244 -SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 244 -~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
+|++.+.++|+||++|+++|||++|+||++|+++|+|+||+|++++|..|+++++++.|.++++.
T Consensus 384 d~Ddr~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 384 GYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp GGGSSSCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHHH
T ss_pred eecCCcCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 88872259999999999999999999999999999999999999999999999999999887765
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-46 Score=377.61 Aligned_cols=276 Identities=14% Similarity=0.129 Sum_probs=238.1
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceec
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~L 82 (404)
++..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|| .+.++||+|+|++| +.++|
T Consensus 5 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g----~~l~L 78 (434)
T 1wu7_A 5 QIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGG----REVTL 78 (434)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTS----CEEEE
T ss_pred ccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCC----CEEEe
Confidence 4678999999999999999999999999999999999999999999999887888 68999999999988 99999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
|||.|+.++++++.+ +++ ++|+|+||+|+|||+| +|+.| |+|||+|.|+|+||.+.+.||+|++.+ +.++|+
T Consensus 79 rPd~t~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~e-rp~~g--R~REF~Q~d~ei~g~~~~~ad~E~i~~---~~~~l~ 150 (434)
T 1wu7_A 79 IPEATPSTVRMVTSR-KDL-QRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPEADAEVIAL---ASSILD 150 (434)
T ss_dssp CSCSHHHHHHHHTTC-TTC-CSSEEEEECCEEECCC-CSCSS--CCSEEEEEEEEEESCCSHHHHHHHHHH---HHHHHH
T ss_pred CCCChHHHHHHHHhc-CCC-CCCeEEEEEcCeecCC-CCCCC--CccceEEeeEEEEcCCChHhhHHHHHH---HHHHHH
Confidence 999999999999988 777 8999999999999999 78889 999999999999999999999987654 467888
Q ss_pred HhCCcc-eE--ee-----------C-CCC-------------------------------------------cC------
Q 015587 163 EFLAVP-VI--KG-----------K-KSE-------------------------------------------LE------ 178 (404)
Q Consensus 163 ~l~~ip-v~--~g-----------~-~~~-------------------------------------------~e------ 178 (404)
.+|.-. +. +| . ..+ ..
T Consensus 151 ~lgl~~~~~i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 230 (434)
T 1wu7_A 151 RLGLQDIYEIRINSRKIMEEIIGGMTSSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMAR 230 (434)
T ss_dssp HTTTTTSEEEEEEEHHHHHHHHHTTCSSCHHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHH
T ss_pred HcCCCCceEEEECChhhHHHHHHHhCcHhHHHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 776411 31 11 1 111 00
Q ss_pred ------------------------c-c-----------------------------------------cH----------
Q 015587 179 ------------------------N-S-----------------------------------------KF---------- 182 (404)
Q Consensus 179 ------------------------k-f-----------------------------------------~F---------- 182 (404)
. + .|
T Consensus 231 ~~~~~~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~Gf 310 (434)
T 1wu7_A 231 ITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAVGF 310 (434)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEEEE
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeEEE
Confidence 0 1 00
Q ss_pred -----HHHHHHHHHcCCCCCCCC-CCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHH
Q 015587 183 -----VQIGVMVMVHGDDKGLML-PPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKY 256 (404)
Q Consensus 183 -----Rli~~Lie~~~d~~Gl~l-P~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~ 256 (404)
|++++|.+. | .| |+ +|+||+|+|++. +..++|.++++.||++|++|++|+++ .++|+||
T Consensus 311 ~igveRl~~~l~e~-----~-~~~p~--~p~~v~v~~~~~------~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~~~ 375 (434)
T 1wu7_A 311 GMGDAVISLLLKRE-----N-VQIPR--EKKSVYICRVGK------INSSIMNEYSRKLRERGMNVTVEIME-RGLSAQL 375 (434)
T ss_dssp EEEHHHHHHHHHHT-----T-CCCCC--SSCEEEEEEESS------CCHHHHHHHHHHHHTTTCEEEECCSC-CCHHHHH
T ss_pred EEcHHHHHHHHHhc-----C-CccCC--CCCcEEEEEcCh------HHHHHHHHHHHHHHHCCCeEEEecCC-CCHHHHH
Confidence 776666653 2 45 65 799999999973 35678999999999999999999987 5999999
Q ss_pred HHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 257 SHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 257 ~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
++|++.|+|++|+||++|+++|+|+|++|.++++..++++++++.++++|.
T Consensus 376 ~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 376 KYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp HHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred HHHHHCCCCEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998877664
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=373.04 Aligned_cols=278 Identities=18% Similarity=0.173 Sum_probs=220.9
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceecc
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
..+++||+||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.++.|+. .++||.|.|++| +.++||
T Consensus 67 l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~---~~~my~f~D~~g----~~l~LR 139 (517)
T 4g85_A 67 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED---SKLIYDLKDQGG----ELLSLR 139 (517)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC---------CSCBBCCTTS----CCEEEC
T ss_pred eeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC---cceeEEEECCCC----CEEEeC
Confidence 4789999999999999999999999999999999999999999999998766653 578999999988 999999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC--CCCccccceeEEeceeeecCC-hhhHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN--PTPFIRSREFLWQEGHTAFAT-KSEADDEVLQILELYRRI 160 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~--~~gllR~REF~q~e~~~~~~~-~~~a~~e~~~~~~~y~~~ 160 (404)
|+.|++++++++. ++.+|+|+||+|+||||| +| ++| |+|||+|.|+|++|.. +..+|+|++.++ .++
T Consensus 140 Pd~T~~~aR~~~~----~~~~p~k~yyig~vfR~E-rp~~~~G--R~ReF~Q~g~ei~G~~~~~~aDaEvi~l~---~~~ 209 (517)
T 4g85_A 140 YDLTVPFARYLAM----NKLTNIKRYHIAKVYRRD-NPAMTRG--RYREFYQCDFDIAGNFDPMIPDAECLKIM---CEI 209 (517)
T ss_dssp SCSHHHHHHHHHH----TTCSCEEEEEEEEEECCC-C---------CCEEEEEEEEEESCCCTTHHHHHHHHHH---HHH
T ss_pred CcCcHHHHHHHHh----CCCCCceeEEEeceEecc-CcccccC--ccceeeeeceeccCCccchHHHHHHHHHH---HHH
Confidence 9999999998764 467899999999999999 66 558 9999999999999864 456799987776 477
Q ss_pred HHHhCCcce--EeeC-----------------------------CCCcC-------------------------------
Q 015587 161 YEEFLAVPV--IKGK-----------------------------KSELE------------------------------- 178 (404)
Q Consensus 161 ~~~l~~ipv--~~g~-----------------------------~~~~e------------------------------- 178 (404)
++.+|.-.+ .+|. +..++
T Consensus 210 l~~lgl~~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~ 289 (517)
T 4g85_A 210 LSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVS 289 (517)
T ss_dssp HHHHCCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHH
T ss_pred HHhhcCCcccccccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCch
Confidence 777764221 1110 00000
Q ss_pred --------------------------------------cc----------c-----------------------------
Q 015587 179 --------------------------------------NS----------K----------------------------- 181 (404)
Q Consensus 179 --------------------------------------kf----------~----------------------------- 181 (404)
++ +
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~ 369 (517)
T 4g85_A 290 LVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVA 369 (517)
T ss_dssp HHHHHHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSE
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceec
Confidence 00 0
Q ss_pred -----------------------H-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 182 -----------------------F-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 182 -----------------------F-----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
| |++.+|.+.. .++.+|.+.+|++|+|++++. +...++.+|++
T Consensus 370 ~GGRYD~Lv~~f~~~G~~~pavGfa~gierl~~~le~~~---~~~~~~~~~~~~~V~v~~~~~------~~~~~a~~l~~ 440 (517)
T 4g85_A 370 AGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRL---EALEEKIRTTETQVLVASAQK------KLLEERLKLVS 440 (517)
T ss_dssp EEEECHHHHHTTSSSCCCCCEEEEEECHHHHHHHHHHHH---HHTTCCCCSCCCCEEEEESSS------SCHHHHHHHHH
T ss_pred CCCchhHHHHHhccCCCCCCcccccchHHHHHHHHHHhc---cccCccccCCCCEEEEEeCCH------HHHHHHHHHHH
Confidence 0 6555444321 123445566789999999863 46788999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
.||++||+|++|+..+.++++||++|++.|+|++||||++|+++|+|+||++.+|++.+|++++|++.|++.+.
T Consensus 441 ~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 514 (517)
T 4g85_A 441 ELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 514 (517)
T ss_dssp HHHHTTCCEEECSSSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC
T ss_pred HHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 99999999999975546899999999999999999999999999999999999999999999999999987653
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=364.99 Aligned_cols=278 Identities=18% Similarity=0.164 Sum_probs=222.6
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceecc
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
...++||+||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|+ ..++||.|.|++| +.++||
T Consensus 14 ~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~---~~~~~y~f~D~~g----~~l~LR 86 (464)
T 4g84_A 14 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGE---DSKLIYDLKDQGG----ELLSLR 86 (464)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-------CCCBBCCCSS----CCEEEC
T ss_pred eeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCc---CcceeEEEECCCC----CEEEeC
Confidence 467999999999999999999999999999999999999999999999876664 3589999999988 999999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCC-hhhHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT-KSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~-~~~a~~e~~~~~~~y~~~~~ 162 (404)
|+.|++++++++. ++.+|+|+||+|+|||+| +|+.|..|+|||+|.++|++|.. +..+|+|++.++ .++++
T Consensus 87 Pd~T~~~aR~~~~----~~~~p~k~~y~g~vfR~e-rp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~---~~~l~ 158 (464)
T 4g84_A 87 YDLTVPFARYLAM----NKLTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIM---CEILS 158 (464)
T ss_dssp SCSHHHHHHHHHH----TTCSCEEEEEEEEEECCC-C------CCSEEEEEEEEEESCCSTTHHHHHHHHHH---HHHHH
T ss_pred CcCcHHHHHHHHh----cCCCCceeEEEecceecc-CCccccCccceeeecceeccCCccchhhHHHHHHHH---HHHHH
Confidence 9999999988764 467899999999999999 77544449999999999999964 456899988766 47777
Q ss_pred HhCCcce--EeeC-------------C----------------CCcC---------------------------------
Q 015587 163 EFLAVPV--IKGK-------------K----------------SELE--------------------------------- 178 (404)
Q Consensus 163 ~l~~ipv--~~g~-------------~----------------~~~e--------------------------------- 178 (404)
.+|.-.+ .+|. . ...+
T Consensus 159 ~lgl~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~ 238 (464)
T 4g84_A 159 SLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLV 238 (464)
T ss_dssp HHTCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHH
T ss_pred HhCCCCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHH
Confidence 7763211 1110 0 0000
Q ss_pred ------------------------------------cc------------------------------------------
Q 015587 179 ------------------------------------NS------------------------------------------ 180 (404)
Q Consensus 179 ------------------------------------kf------------------------------------------ 180 (404)
++
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~G 318 (464)
T 4g84_A 239 EQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAG 318 (464)
T ss_dssp HHHTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEE
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCcccceeccC
Confidence 00
Q ss_pred --------cH-----------------HHHHHHHHHcCCCCCCCCCC--CCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 181 --------KF-----------------VQIGVMVMVHGDDKGLMLPP--KVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 181 --------~F-----------------Rli~~Lie~~~d~~Gl~lP~--~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
.| |++.+|.+. +..+|+ +..+++|+|++++. +...+|.+|++
T Consensus 319 GRYD~L~~~~~~~g~~~pavGfaigieRl~~~l~~~-----~~~~~~~~~~~~~~v~v~~~~~------~~~~~a~~l~~ 387 (464)
T 4g84_A 319 GRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQR-----LEALEEKIRTTETQVLVASAQK------KLLEERLKLVS 387 (464)
T ss_dssp EECCSTGGGTSTTCCCCCEEEEEECHHHHHHHHHHH-----HHTTTCCCCSCCCCEEEECSSS------SCHHHHHHHHH
T ss_pred CchhHHHHHhccCCCCCCCccccccHHHHHHHHHHh-----ccccCcccccccceEEEEeCCH------HHHHHHHHHHH
Confidence 00 877777654 233443 34567888888763 46788999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
.||++||+|++|+..+.++++||++|++.|+|++||||++|+++|+|+||+|.+|+|.+|++++|++.|++.+.
T Consensus 388 ~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 461 (464)
T 4g84_A 388 ELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 461 (464)
T ss_dssp HHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHT
T ss_pred HHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 99999999999875546899999999999999999999999999999999999999999999999999988764
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=355.87 Aligned_cols=280 Identities=16% Similarity=0.182 Sum_probs=225.4
Q ss_pred CccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccc-eEEEEec---CCC---
Q 015587 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE-VAWVTKS---GES--- 74 (404)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e-~~~~~~~---g~~--- 74 (404)
++..+++||+||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.++ | +. .++ ||.|.|+ |+.
T Consensus 10 ~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G--~~-~ke~m~~~~d~~~~g~~~~~ 85 (465)
T 3net_A 10 INFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G--NQ-GDNIIYGLEPILPPNRQAEK 85 (465)
T ss_dssp CCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G--CC---CBEEEEEEEC--------
T ss_pred ccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C--CC-CccceEEEeccccccccccc
Confidence 46789999999999999999999999999999999999999999999999876 6 33 478 9999998 400
Q ss_pred -----CCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhH--H
Q 015587 75 -----DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA--D 147 (404)
Q Consensus 75 -----~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a--~ 147 (404)
.-++.++|||+.|++++++++.+.. +.++|+|+||+|+|||+| +||+| |+|||+|.++|+++.+...| |
T Consensus 86 ~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~-~~~~p~r~~y~g~vfR~e-~~~~g--r~Ref~Q~g~ei~G~~~~~a~~D 161 (465)
T 3net_A 86 DKSGDTGSEARALKFDQTVPLAAYIARHLN-DLTFPFARYQMDVVFRGE-RAKDG--RFRQFRQCDIDVVGREKLSLLYD 161 (465)
T ss_dssp --------CCEEECSCSHHHHHHHHHHHGG-GSCSSEEEEECCEEECBC---------CCEEEEEEEEEECSSCCCHHHH
T ss_pred ccccCCCCCEEEeCCCChHHHHHHHHhccc-ccCCCeEEEEeccEEecC-CCCCC--CcceeEEeeEEEECCCCccchhh
Confidence 0028999999999999999998764 568999999999999999 67999 99999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhCCcce--EeeC-------------CC-------------------------------------
Q 015587 148 DEVLQILELYRRIYEEFLAVPV--IKGK-------------KS------------------------------------- 175 (404)
Q Consensus 148 ~e~~~~~~~y~~~~~~l~~ipv--~~g~-------------~~------------------------------------- 175 (404)
+|++.++ .++++.+|.-.+ .+|. ..
T Consensus 162 aEvi~l~---~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~ 238 (465)
T 3net_A 162 AQMPAII---TEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQK 238 (465)
T ss_dssp HHHHHHH---HHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHH---HHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHH
Confidence 9998877 366666653111 1110 00
Q ss_pred --------------------------------------------C--cCc----c-------------------------
Q 015587 176 --------------------------------------------E--LEN----S------------------------- 180 (404)
Q Consensus 176 --------------------------------------------~--~ek----f------------------------- 180 (404)
. ... +
T Consensus 239 l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~ 318 (465)
T 3net_A 239 IIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGH 318 (465)
T ss_dssp HHHHHTCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTC
T ss_pred HHHHHHhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHhcccccCceEEEccCccCCCcccCceEEEEEECCC
Confidence 0 001 2
Q ss_pred -----------------cH---------------HHHHHHHHHcCCCCCCCCCC-CCCCceEEEEEecCCCCChhhHHHH
Q 015587 181 -----------------KF---------------VQIGVMVMVHGDDKGLMLPP-KVASVQVIVIPVPYKDADTQGIFDA 227 (404)
Q Consensus 181 -----------------~F---------------Rli~~Lie~~~d~~Gl~lP~-~iap~qV~Iipi~~~~~~~~~~~~~ 227 (404)
.| |++++|.+. |. +|+ +.+|.||+|+|++ ++...+
T Consensus 319 ~~~~~i~~GGRYD~L~~~f~g~~~pavGfaiGieRli~~L~e~-----g~-~p~~~~~p~~V~Vi~~~------~~~~~~ 386 (465)
T 3net_A 319 EALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKA-----GI-LNTLPPTPAQVVVVNMQ------DELMPT 386 (465)
T ss_dssp GGGCCSSEEEEESSSSGGGTCSCCCEEEEEEEHHHHHHHHHHT-----TS-SCCCCSCSCCEEECCSC------GGGHHH
T ss_pred CccceecccccHHHHhhhhcCCCCceeeeeccHHHHHHHHHHc-----CC-CCCcCCCCCeEEEEEcC------HHHHHH
Confidence 01 666666652 33 776 7899999999986 356789
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCC-eEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 228 CTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAND-QVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 228 a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~-~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
|.++++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++ +++| +|+||+|++++|..++++++++.++++|
T Consensus 387 A~~la~~LR~~Gi~ve~d~~~-~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 387 YLKVSQQLRQAGLNVITNFEK-RQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp HHHHHHHHHHTTCCEEECCSC-CCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred HHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 999999999999999999987 699999999999999999999999 9999 9999999999999999999999887653
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=347.91 Aligned_cols=272 Identities=17% Similarity=0.168 Sum_probs=214.2
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+.+.+++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.+++||. +.++||+|.|++| +.+
T Consensus 26 m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g----~~l 99 (456)
T 3lc0_A 26 MVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGG----HRV 99 (456)
T ss_dssp CCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSS----CEE
T ss_pred cccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCC----CEE
Confidence 5678899999999999999999999999999999999999999999999998777873 7899999999988 999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+|||+.|++++++++.+.. ++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+++.+...+|+|++.++ .++
T Consensus 100 ~LRpd~T~~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e-~~~~g--R~ReF~Q~g~ei~G~~~~~~DaEvi~l~---~~~ 172 (456)
T 3lc0_A 100 ALRPEMTPSLARLLLGKGR-SLLLPAKWYSIPQCWRYE-AITRG--RRREHYQWNMDIVGVKSVSAEVELVCAA---CWA 172 (456)
T ss_dssp EECSCSHHHHHHHHHHSCT-TCCSSEEEEECCEEECCC-C-------CCEEEEEEEEEESCCSTHHHHHHHHHH---HHH
T ss_pred ecCCcCHHHHHHHHHhcCc-ccCCCEEEEEeccEEecC-CCCCC--CccceEEEEEEEEcCCChHhhHHHHHHH---HHH
Confidence 9999999999999988753 578999999999999999 67889 9999999999999999999999988776 588
Q ss_pred HHHhCC--cce--EeeC-------------CCC----------------cC-----------------c-----------
Q 015587 161 YEEFLA--VPV--IKGK-------------KSE----------------LE-----------------N----------- 179 (404)
Q Consensus 161 ~~~l~~--ipv--~~g~-------------~~~----------------~e-----------------k----------- 179 (404)
++.+|. -.+ .+|. ..+ ++ +
T Consensus 173 l~~lgl~~~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~ 252 (456)
T 3lc0_A 173 MRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSID 252 (456)
T ss_dssp HHHTTCCTTTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHH
T ss_pred HHHcCCCCCceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHH
Confidence 888874 122 2221 000 00 0
Q ss_pred ------------c-----------------------------c-------------------------------------
Q 015587 180 ------------S-----------------------------K------------------------------------- 181 (404)
Q Consensus 180 ------------f-----------------------------~------------------------------------- 181 (404)
+ +
T Consensus 253 ~l~~~l~~~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~ 332 (456)
T 3lc0_A 253 EIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTP 332 (456)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCC
Confidence 0 0
Q ss_pred -----H-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 015587 182 -----F-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYS 251 (404)
Q Consensus 182 -----F-----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s 251 (404)
| |++.+|.+. |. .|+...+.+|+|++.+ ++....+.++++.||++|++|++|..+ .+
T Consensus 333 ~PavGFaig~eRl~~~l~~~-----~~-~~~~~~~~~v~v~~~~------~~~~~~a~~la~~LR~~Gi~ve~~~~~-~s 399 (456)
T 3lc0_A 333 IPCAGFGFGDCVIVELLQEK-----RL-LPDIPHVVDDVVIPFD------ESMRPHALAVLRRLRDAGRSADIILDK-KK 399 (456)
T ss_dssp CCEEEEEEESSHHHHHHHHT-----TC-CCCCCCCEEEEEEESS------GGGHHHHHHHHHHHHHTTCCEEECCSC-CC
T ss_pred CCEEEEEeEHHHHHHHHHhc-----CC-CCccCCCCcEEEEEcC------HHHHHHHHHHHHHHHHCCCeEEEecCC-CC
Confidence 0 776665442 22 2332335688999886 345688999999999999999999987 58
Q ss_pred hhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhH
Q 015587 252 PGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298 (404)
Q Consensus 252 ~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el 298 (404)
+++++++|++.|+|++|+||++|+++|+|+||++.+++|..+++++.
T Consensus 400 lkkq~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 400 VVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp HHHHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC------------
T ss_pred HHHHHHHHHHcCCCEEEEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 99999999999999999999999999999999999999998888664
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=299.40 Aligned_cols=197 Identities=16% Similarity=0.222 Sum_probs=171.7
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||++++ +.++||||+
T Consensus 161 g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~~-------~~l~LrPt~ 232 (425)
T 2dq3_A 161 GSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIG-TGQLPKFEEDLYKCER-------DNLYLIPTA 232 (425)
T ss_dssp CSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HSCTTTTGGGSCBCTT-------TCCEECSST
T ss_pred CCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCCCcChhhheEecC-------CeEEEcCCC
Confidence 59999999999999999999999999999999999999999999965 8999999999998852 679999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
|++++++|++++.++++||+|++|+|+|||+|.. +++||+|+|||+|.|+|+++. ++++++++..+++.+.++|+
T Consensus 233 e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~-pe~s~~~~~e~i~~~~~il~ 311 (425)
T 2dq3_A 233 EVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVH-PDTSYDELEKLVKDAEEVLQ 311 (425)
T ss_dssp HHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEEC-GGGHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999973 478999999999999999554 56799999999999999999
Q ss_pred HhCCcceEe-----eCC--CCcCcc----------------------cH-------------------------------
Q 015587 163 EFLAVPVIK-----GKK--SELENS----------------------KF------------------------------- 182 (404)
Q Consensus 163 ~l~~ipv~~-----g~~--~~~ekf----------------------~F------------------------------- 182 (404)
.|| +|+.+ |.. +....| +|
T Consensus 312 ~LG-L~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~~~k~~~vHtl~Gs~~av~ 390 (425)
T 2dq3_A 312 LLG-LPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVG 390 (425)
T ss_dssp HHT-CCEEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHH
T ss_pred HCC-CceEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccCcccCCeEEECCCCCeeEEEEEEeccccHHH
Confidence 987 67631 110 000000 11
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCce-EEEEE
Q 015587 183 VQIGVMVMVHGDDKG-LMLPPKVASVQ-VIVIP 213 (404)
Q Consensus 183 Rli~~Lie~~~d~~G-l~lP~~iap~q-V~Iip 213 (404)
|+|++|+|+|+++.| +.||++++|+| +-+|+
T Consensus 391 R~i~allE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 391 RTLAAILENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp HHHHHHHHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred HHHHHHHHhCCCCCCCEecCccccCccCcccCC
Confidence 999999999999999 99999999999 65553
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=299.38 Aligned_cols=209 Identities=16% Similarity=0.184 Sum_probs=174.5
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCC----CCCCceec
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGES----DLEVPIAI 82 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~----~l~~~l~L 82 (404)
.+|++.|+|.|+++++.|.+++++.+.++||++|.||.|.+.++|. .+|||+.|.++||++++.|+. +.+++++|
T Consensus 190 Gsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~-~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L 268 (522)
T 3vbb_A 190 GSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ-EVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYL 268 (522)
T ss_dssp STTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHSCCC-CCSCCCEEC------------CCEEE
T ss_pred CcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHh-hcCCcccCcccceEeecCCccccccccCcceeE
Confidence 5899999999999999999999999999999999999999999995 699999999999999876421 12378999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCC----CCCCCccccceeEEeceeeecCCh-hhHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFATK-SEADDEVLQILELY 157 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~~-~~a~~e~~~~~~~y 157 (404)
+||+|++++.+|++++.||++||+|++++++|||+|. ++++||+|+|||+|.|+|+|.... +++++++..+++.|
T Consensus 269 ~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 269 IATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp CSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 357899999999999999955443 24999999999999
Q ss_pred HHHHHHhCCcceEeeCCC-------CcCcc----------------------c---------------------H-----
Q 015587 158 RRIYEEFLAVPVIKGKKS-------ELENS----------------------K---------------------F----- 182 (404)
Q Consensus 158 ~~~~~~l~~ipv~~g~~~-------~~ekf----------------------~---------------------F----- 182 (404)
.++|+.|| +|+.+...+ ...+| + |
T Consensus 349 e~il~~LG-Lpyrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~DyqArr~~iry~~~~~~~~k~~~vhtlN 427 (522)
T 3vbb_A 349 EEFYQSLG-IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLN 427 (522)
T ss_dssp HHHHHHTT-CCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESCC---CCCCCBCEEEE
T ss_pred HHHHHHcC-CceEEEEcCCccCCCchhheeceeEecCCCCceeEEEEecCCCCCccceeeeEEccccccCCCeeeceEEe
Confidence 99999987 686331110 00001 1 1
Q ss_pred -------HHHHHHHHHcCCCCCCCCCCCCCCceE----EEEEecCC
Q 015587 183 -------VQIGVMVMVHGDDKGLMLPPKVASVQV----IVIPVPYK 217 (404)
Q Consensus 183 -------Rli~~Lie~~~d~~Gl~lP~~iap~qV----~Iipi~~~ 217 (404)
|+|++|+|+|+++.|+++|+.++|+.. .|+|+..+
T Consensus 428 gs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~~ 473 (522)
T 3vbb_A 428 ATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKP 473 (522)
T ss_dssp EEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCSC
T ss_pred ccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCCC
Confidence 999999999999999999999999987 78998753
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=298.53 Aligned_cols=200 Identities=15% Similarity=0.148 Sum_probs=176.3
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCccc-ceEEEEecCCCCCCCceeccCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~-e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.+|++.|+|.|++++++|++++++.+.++||++|.||.|.+.++| .++||++.|.+ +||++++.++ ++++|+||
T Consensus 208 G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~~~~f~e~emf~v~~~~~----~~l~L~PT 282 (501)
T 1wle_A 208 GHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVF-EGCGMTPNAKPSQIYNIDPSRF----EDLNLAGT 282 (501)
T ss_dssp CTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHH-HHHTCCSSSSSCSSCBBCTTTS----SSCEECSS
T ss_pred cCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHH-HhhcCCCccCccccEEEecCCC----CeEEECCc
Confidence 489999999999999999999999999999999999999999999 46999999998 9999987655 78999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC---CCCCccccceeEEeceeeecCCh-hhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS---NPTPFIRSREFLWQEGHTAFATK-SEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~---~~~gllR~REF~q~e~~~~~~~~-~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++.++++++.||++||+|++|+++|||+|.+ +++||+|+|||.|.|+|+|+.+. +++++++..+++.|.++|
T Consensus 283 aE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il 362 (501)
T 1wle_A 283 AEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEIL 362 (501)
T ss_dssp HHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986 57899999999999999987776 899999999999999999
Q ss_pred HHhCCcceEeeCCC-------CcCcc----------------------cH------------------------------
Q 015587 162 EEFLAVPVIKGKKS-------ELENS----------------------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~-------~~ekf----------------------~F------------------------------ 182 (404)
+.|| +|+.+...+ ...+| +|
T Consensus 363 ~~Lg-Lpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR~~iry~~~~gk~~~vHtlngSglav~ 441 (501)
T 1wle_A 363 TELG-LHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVP 441 (501)
T ss_dssp HHTT-CCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECSSSCEEECEEEEEEEEEHH
T ss_pred HHCC-CcEEEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhhcCcEEECCCCCEEEEEEECCccchHH
Confidence 9987 786432111 11111 12
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCce-EEEE
Q 015587 183 VQIGVMVMVHGDDKG-LMLPPKVASVQ-VIVI 212 (404)
Q Consensus 183 Rli~~Lie~~~d~~G-l~lP~~iap~q-V~Ii 212 (404)
|+|++|+|+|++++| ++||++++|++ +-+|
T Consensus 442 R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 442 RLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred HHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 999999999999999 99999999997 4343
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=299.09 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=170.6
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
..+|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||++++ ++++||||
T Consensus 181 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~d-------~~l~LrPt 252 (455)
T 2dq0_A 181 SGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEG-STSFEDFEDVIYKVED-------EDLYLIPT 252 (455)
T ss_dssp TCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHT-TSCTTHHHHTCCBBTT-------SSCEECSS
T ss_pred cCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHh-cCCCCCChHhhCeecC-------CcEEEcCc
Confidence 358999999999999999999999999999999999999999999965 7999999999999863 67999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++.+|++++.||++||+|++|+|+|||+|.+ .++||+|+|||+|.|+|. +++++++.+++..+++.+.++|
T Consensus 253 ~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~-f~~pe~s~~~~~e~l~~~~~il 331 (455)
T 2dq0_A 253 AEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFV-YSRPEESWEWHEKIIRNAEELF 331 (455)
T ss_dssp THHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEE-EECTTTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEE-ecCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999974 357999999999999997 6666899999999999999999
Q ss_pred HHhCCcceEeeCCCCc-------------------Ccc----------cH------------------------------
Q 015587 162 EEFLAVPVIKGKKSEL-------------------ENS----------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~~~-------------------ekf----------~F------------------------------ 182 (404)
+.|| +|+.+...+.. .+| +|
T Consensus 332 ~~LG-L~yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR~~iry~~~~~g~~~~vHtlngs~lav 410 (455)
T 2dq0_A 332 QELE-IPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIAT 410 (455)
T ss_dssp HHTT-CCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCCEECEEEEEEEEEH
T ss_pred HHcC-CceEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhccCcEEecCCCCcEEEEEEEechHhHH
Confidence 9987 67643211100 011 11
Q ss_pred -HHHHHHHHHcCCCCC-CCCCCCCCCce
Q 015587 183 -VQIGVMVMVHGDDKG-LMLPPKVASVQ 208 (404)
Q Consensus 183 -Rli~~Lie~~~d~~G-l~lP~~iap~q 208 (404)
|+|++|+|+|+++.| +.||++++|+|
T Consensus 411 ~R~i~allE~~~~~dG~i~iP~~LaP~~ 438 (455)
T 2dq0_A 411 SRAIVAILENHQEEDGTVRIPKVLWKYT 438 (455)
T ss_dssp HHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred HHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence 999999999999999 89999999999
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=295.75 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=171.8
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|. .+||++.|.++||++++ ++++|+||+
T Consensus 155 g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sG~~~~f~~emy~~~d-------~~l~L~Pt~ 226 (421)
T 1ses_A 155 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFL-GTGHFPAYRDQVWAIAE-------TDLYLTGTA 226 (421)
T ss_dssp CSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHTCTTTTGGGSCBBTT-------SSEEECSST
T ss_pred CCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHH-hcCCCCcCchhcEEEcC-------CeEEEeecC
Confidence 4899999999999999999999999999999999999999999996 58999999999999863 679999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCC----CCCCCccccceeEEeceeeecCC-hhhHHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFAT-KSEADDEVLQILELYRRIY 161 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~-~~~a~~e~~~~~~~y~~~~ 161 (404)
|++++.++++++.||++||+|++|+|+|||+|. +|++||+|+|||+|.|+|+++.+ .+++++++..+++.+.++|
T Consensus 227 e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il 306 (421)
T 1ses_A 227 EVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEIL 306 (421)
T ss_dssp HHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 78999999999999999997765 4889999999999999999
Q ss_pred HHhCCcceEe--------eCCCC-------c----Ccc----------cH------------------------------
Q 015587 162 EEFLAVPVIK--------GKKSE-------L----ENS----------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~--------g~~~~-------~----ekf----------~F------------------------------ 182 (404)
+.|| +|+.+ |.... | ..| +|
T Consensus 307 ~~LG-L~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqarr~~i~y~~~~~~~~~vhtlngs~lav~ 385 (421)
T 1ses_A 307 RLLE-LPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATP 385 (421)
T ss_dssp HHTT-CCEEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEET
T ss_pred HHCC-CceEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhhhhhcCEeECCCCCEEEEEecCCccchHH
Confidence 9987 67632 11110 0 001 12
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCce
Q 015587 183 VQIGVMVMVHGDDKG-LMLPPKVASVQ 208 (404)
Q Consensus 183 Rli~~Lie~~~d~~G-l~lP~~iap~q 208 (404)
|+|++|+|+|+++.| ++||++++|+.
T Consensus 386 R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 386 RILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred HHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 999999999999999 99999999986
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=288.84 Aligned_cols=202 Identities=14% Similarity=0.161 Sum_probs=176.4
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|++.|+|.|+++++.|.+++++.+.+.||++|.||.|.+.++|. .+||++.|.++||++++. + ++++|+||+
T Consensus 174 Gsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~-~sG~l~~f~eemf~v~~~-~----~~~~LipTa 247 (485)
T 3qne_A 174 GHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMA-KTAQLSQFDEELYKVIDG-E----DEKYLIATS 247 (485)
T ss_dssp CTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHH-HHSCHHHHTTTCCEEEET-T----EEEEECSST
T ss_pred cceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHh-hcCCccccccceEEEeCC-C----CeEEEeccc
Confidence 5799999999999999999999999999999999999999999995 589999999999999875 3 689999999
Q ss_pred hhHHHHHHHhhhcc--CCCCCeEEEeeeceeecCCCC----CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRG--HRDLPLKLNQWCNVVRWEFSN----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 87 e~~i~~~~~~~i~s--~~~lPlk~~q~~~vfR~E~~~----~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
|.+++.++++++.+ |++||+|++|+++|||+|.++ ++||+|+|||+|.|+|+| ++++++++++..|+++|.++
T Consensus 248 E~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f-~~pe~s~~e~e~ml~~~e~i 326 (485)
T 3qne_A 248 EQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVL-TEPEKSWEEFDRMIGCSEEF 326 (485)
T ss_dssp HHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEE-ECGGGHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEE-eCHHHHHHHHHHHHHHHHHH
Confidence 99999999998887 999999999999999999853 689999999999999995 57789999999999999999
Q ss_pred HHHhCCcceEeeCCCC-------cCcc----------------------c---------------------H--------
Q 015587 161 YEEFLAVPVIKGKKSE-------LENS----------------------K---------------------F-------- 182 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~-------~ekf----------------------~---------------------F-------- 182 (404)
|+.|| +|+.+...+. ..+| + |
T Consensus 327 l~~Lg-Lpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~~~vhtlNgt~ 405 (485)
T 3qne_A 327 YQSLG-LPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTL 405 (485)
T ss_dssp HHHTT-CCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC------CCCBCEEEEEEE
T ss_pred HHHCC-CcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccceEEecccccCCCceeeEEEecch
Confidence 99986 7864321110 0001 1 2
Q ss_pred ----HHHHHHHHHcCCCCCCCCCCCCCCceE---EEEEecC
Q 015587 183 ----VQIGVMVMVHGDDKGLMLPPKVASVQV---IVIPVPY 216 (404)
Q Consensus 183 ----Rli~~Lie~~~d~~Gl~lP~~iap~qV---~Iipi~~ 216 (404)
|+|++|+|+|++++|+++|+.++|+.. .++|+..
T Consensus 406 lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~~~i~~~~ 446 (485)
T 3qne_A 406 SATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYIK 446 (485)
T ss_dssp EEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCCSEEECCC
T ss_pred hHHHHHHHHHHHhcCCCCceecChhhcCccCCcceEeeccc
Confidence 999999999999999999999999874 6778764
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-32 Score=279.03 Aligned_cols=202 Identities=13% Similarity=0.152 Sum_probs=175.5
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
+.+|++.|+|.|+++++.|.+++++.+.++||++|.||.|.+.++|. .+|||+.|.++||++++. + +.++|+||
T Consensus 196 sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~-~sG~~~~f~e~mf~v~~~-~----~~~~L~PT 269 (484)
T 3lss_A 196 AGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMG-EVAQLSQFDEELYQVSGD-G----DKKYLIAT 269 (484)
T ss_dssp HCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHH-HHSCHHHHHHTCCEEESS-S----SCEEECSS
T ss_pred CCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHH-hcCCcccccccceEeecC-C----cceEEecc
Confidence 35789999999999999999999999999999999999999999995 599999999999999864 3 78999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhh--HHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSE--ADDEVLQILELYRR 159 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~--a~~e~~~~~~~y~~ 159 (404)
+|++++.++++++.||++||+|++++++|||+|.+ .++||+|+|||+|.|+|+| +++++ +.+++..+++.|.+
T Consensus 270 aE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f-~~pe~~~s~~e~e~~~~~~e~ 348 (484)
T 3lss_A 270 SEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVV-CSPRQEESWRHLEDMITTSEE 348 (484)
T ss_dssp THHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEE-ECSSTTHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEE-eCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999973 4589999999999999995 45566 99999999999999
Q ss_pred HHHHhCCcceEe--------eCCCCcCcc----------------------------------------------cH---
Q 015587 160 IYEEFLAVPVIK--------GKKSELENS----------------------------------------------KF--- 182 (404)
Q Consensus 160 ~~~~l~~ipv~~--------g~~~~~ekf----------------------------------------------~F--- 182 (404)
+|+.|| +|+.+ |... ..+| .|
T Consensus 349 il~~LG-Lpyrvv~l~tgdlg~~a-~~~yDiE~w~P~~~~~~EIsS~Snc~dyqArr~~iry~~~~~~~~~~~~~~~vht 426 (484)
T 3lss_A 349 FNKSLG-LPYRVVNICSGALNNAA-AKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHM 426 (484)
T ss_dssp HHHHHT-CCEEEEECCTTTCCSSC-SEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESSCCC----CCSCEECEE
T ss_pred HHHHcC-CcEEEEEcCCcccCCch-hheechheecCCCCCeeEEEEecCcccccccccceEEeccccccccCCCceeeeE
Confidence 999997 67532 1100 0000 12
Q ss_pred ---------HHHHHHHHHcCCCCCCCCCCCCCCce--EEEEEecC
Q 015587 183 ---------VQIGVMVMVHGDDKGLMLPPKVASVQ--VIVIPVPY 216 (404)
Q Consensus 183 ---------Rli~~Lie~~~d~~Gl~lP~~iap~q--V~Iipi~~ 216 (404)
|+|.+|+|+|.++.|+++|+.++|+. +-+||...
T Consensus 427 lNgt~~av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~~i~~~~ 471 (484)
T 3lss_A 427 LNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFEN 471 (484)
T ss_dssp EEEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGGTTTCCEEECCC
T ss_pred EeccchHHHHHHHHHHHhcCCCCCeeCChhhcCccCCcceeecCc
Confidence 99999999999999999999999986 66677753
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-32 Score=284.63 Aligned_cols=192 Identities=14% Similarity=0.163 Sum_probs=170.0
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|++.|+|.|++++++|.+++++.+.+.||++|.||.|.+.++|. .+||++.|.++||++++ ++++|+||+
T Consensus 264 G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~-~sG~~~~f~e~mf~~~~-------~~~~L~PT~ 335 (536)
T 3err_A 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFL-GTGHFPAYRDQVWAIAE-------TDLYLTGTA 335 (536)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHTCTTTTGGGCCEETT-------TTEEECSST
T ss_pred CCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHH-hcCCcccChhhceEecC-------CCEEEccCC
Confidence 5899999999999999999999999999999999999999999995 59999999999999964 579999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCC----CCCCCccccceeEEeceeeecCCh-hhHHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFATK-SEADDEVLQILELYRRIY 161 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~~-~~a~~e~~~~~~~y~~~~ 161 (404)
|++++.++++++.||++||+|++|+++|||+|. ++++||+|+|||+|.|+|+|+... +++++++..+++.|.++|
T Consensus 336 E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~ 415 (536)
T 3err_A 336 EVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEIL 415 (536)
T ss_dssp HHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 458899999999999999966554 499999999999999999
Q ss_pred HHhCCcceEeeCCC-------CcCcc----------------------cH------------------------------
Q 015587 162 EEFLAVPVIKGKKS-------ELENS----------------------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~-------~~ekf----------------------~F------------------------------ 182 (404)
+.|| +|+.+...+ ...+| +|
T Consensus 416 ~~Lg-Lpyrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~~iry~~~~~k~~~vhtlngs~~a~~ 494 (536)
T 3err_A 416 RLLE-LPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATP 494 (536)
T ss_dssp HHTT-CCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEET
T ss_pred HHcC-CcEEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccChhhcccCeEEECCCCCeEeeeEEeccchhHH
Confidence 9987 786432111 11111 11
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCc
Q 015587 183 VQIGVMVMVHGDDKG-LMLPPKVASV 207 (404)
Q Consensus 183 Rli~~Lie~~~d~~G-l~lP~~iap~ 207 (404)
|+|++|+|+|++++| +++|+.++|+
T Consensus 495 R~l~ailen~q~~dg~i~iP~~L~py 520 (536)
T 3err_A 495 RILAMLLENHQLQDGRVRVPQALIPY 520 (536)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHH
T ss_pred HHHHHHHHhcCCCCCcEeCChhhCCc
Confidence 999999999999999 9999999986
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=275.74 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=142.2
Q ss_pred CccCCCCccEEeCchHHHHHHHHHHHHHHH-HHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC--C-----
Q 015587 2 IEYYDISGCYIMRPWAISIWETMQKFFDAE-IKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--E----- 73 (404)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~-~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g--~----- 73 (404)
+.+..++|+++|+|.|+++|++|++++++. +.++||++|.||+|++.++|.+ +||++.|.++||+++..+ +
T Consensus 215 i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~-SGh~~~F~demy~v~~~~~Rd~~~~e 293 (522)
T 2cja_A 215 LKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMK-SGHAKGVYPEIYYVCPPQTRDPDYWE 293 (522)
T ss_dssp EEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHH-HTGGGTCGGGCCEEECBSCCCHHHHH
T ss_pred eeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhh-cCCcCccccceeeeecCCccchhhhh
Confidence 345689999999999999999999999975 8999999999999999999965 899999999999997321 1
Q ss_pred ------------------CC-CCCceeccCCChhHHHHHHHhhhccCCCCCeEEEe-eeceeecCCCCCCCccccceeEE
Q 015587 74 ------------------SD-LEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLW 133 (404)
Q Consensus 74 ------------------~~-l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q-~~~vfR~E~~~~~gllR~REF~q 133 (404)
+. -++.++||||+|++++.+|++++.||++||+++|| +|+|||||.++++||+|+|||+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q 373 (522)
T 2cja_A 294 EVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHR 373 (522)
T ss_dssp HHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEE
T ss_pred hhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEE
Confidence 00 13789999999999999999999999999999999 99999999333389999999999
Q ss_pred eceeeecCChhhHHHHHHHHH-HHHHHHHHHhCCcce
Q 015587 134 QEGHTAFATKSEADDEVLQIL-ELYRRIYEEFLAVPV 169 (404)
Q Consensus 134 ~e~~~~~~~~~~a~~e~~~~~-~~y~~~~~~l~~ipv 169 (404)
.|+|+| ++++++++++..++ .....+++.|| +|.
T Consensus 374 ~E~~~F-~~pe~s~ee~ee~i~~~~~~~l~~LG-Lp~ 408 (522)
T 2cja_A 374 IEIVWI-GTKEEVLKCAEELHDRYMHIFNDILD-IEW 408 (522)
T ss_dssp EEEEEE-EEHHHHHHHHHHHHHHHHHHHHHTSC-CCE
T ss_pred eeEEEE-eChHHHHHHHHHHHHHHHHHHHHHcC-CCE
Confidence 999995 58888999998888 44455668776 663
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=258.18 Aligned_cols=149 Identities=14% Similarity=0.074 Sum_probs=134.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceecc
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
+..++|++||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.+. + +.+.++||+|.|++| +.++||
T Consensus 10 ~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~-g--~~~~~~my~f~D~~g----~~l~LR 82 (400)
T 3od1_A 10 FEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVV-S--AILDQQLFKLLDQQG----NTLVLR 82 (400)
T ss_dssp TCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHH-S--SSCGGGSCEEECTTS----CEEEEC
T ss_pred ccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-C--CccccceEEEECCCC----CEEEEC
Confidence 578999999999999999999999999999999999999999999999764 4 467899999999988 999999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+.|+++++++++... ++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+++.+...+|+|++.++ .++++.
T Consensus 83 pd~T~~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e-~~~~g--R~Ref~Q~g~ei~G~~~~~aDaEvi~l~---~~~l~~ 155 (400)
T 3od1_A 83 PDMTAPIARLVASSLK-DRAYPLRLAYQSNVYRAQ-QNEGG--KPAEFEQLGVELIGDGTASADGEVIALM---IAALKR 155 (400)
T ss_dssp SCSHHHHHHHHHHHCS-SSCSCEEEEEEEEEECCC-C---C--CCSEEEEEEEEEESCCSHHHHHHHHHHH---HHHHHH
T ss_pred CCCHHHHHHHHHhhcc-cCCCCeEEEEEcCEEeCC-CCCCC--CCCccEEeEEEEECCCChHhHHHHHHHH---HHHHHH
Confidence 9999999999987753 578999999999999999 67889 9999999999999999999999988877 588888
Q ss_pred hCC
Q 015587 164 FLA 166 (404)
Q Consensus 164 l~~ 166 (404)
+|.
T Consensus 156 lgl 158 (400)
T 3od1_A 156 AGL 158 (400)
T ss_dssp TTC
T ss_pred CCC
Confidence 874
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=244.13 Aligned_cols=151 Identities=12% Similarity=0.046 Sum_probs=132.2
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhh-hcccccCcccceEEEEecCCCCCCCcee
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK-EKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k-~~g~~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
.+..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+ -+++++.+.++||.|.|++| +.++
T Consensus 21 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g----~~l~ 96 (344)
T 1z7m_A 21 NYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEG----QSIT 96 (344)
T ss_dssp -CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTC----CEEE
T ss_pred cCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCC----CEEe
Confidence 467899999999999999999999999999999999999999999999965 23888889999999999988 9999
Q ss_pred ccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
|||+.|+.++++++.. ++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+++.+...+|+|++.++ .++|
T Consensus 97 LRpd~T~~~aR~~~~~---~~~~P~rl~y~g~vfR~e-~p~~g--R~REF~Q~g~ei~g~~~~~aDaEvi~l~---~~~l 167 (344)
T 1z7m_A 97 LRYDFTLPLVRLYSQI---KDSTSARYSYFGKIFRKE-KRHKG--RSTENYQIGIELFGESADKSELEILSLA---LQVI 167 (344)
T ss_dssp ECCCSHHHHHHHHHTC---CSCCCEEEEEEEECCCCC-C---------CCEEEEEEEESSCHHHHHHHHHHHH---HHHH
T ss_pred cCCCCcHHHHHHHHhc---CCCCCeEEEEECcEEccC-CCCCC--CcceeEEEEEEEEcCCCcHHHHHHHHHH---HHHH
Confidence 9999999999999876 678999999999999999 77889 9999999999999999999999887766 6899
Q ss_pred HHhCC
Q 015587 162 EEFLA 166 (404)
Q Consensus 162 ~~l~~ 166 (404)
+.+|.
T Consensus 168 ~~lgl 172 (344)
T 1z7m_A 168 EQLGL 172 (344)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 99984
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=234.82 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=135.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcc-cceEEEEecCCCCCCCceec
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFA-PEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~-~e~~~~~~~g~~~l~~~l~L 82 (404)
+..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+ ++ +.+. ++||.|.|++| +.++|
T Consensus 23 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~-~g--~~~~~~~my~~~D~~g----~~l~L 95 (373)
T 3rac_A 23 ADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLR-AR--SPESSRDWIRLFDGGG----DAVAL 95 (373)
T ss_dssp CCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHT-TS--CTTSCCCCCBCCCCSS----SCEEE
T ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhh-cC--CccchhceEEEECCCC----CEEEE
Confidence 47799999999999999999999999999999999999999999999976 44 4577 89999999988 89999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC------CCCccccceeEEeceeeecCC-hhhHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN------PTPFIRSREFLWQEGHTAFAT-KSEADDEVLQILE 155 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~------~~gllR~REF~q~e~~~~~~~-~~~a~~e~~~~~~ 155 (404)
||+.|+.+++++++...+ +++|+|+||+|+|||+| +| +.| |+|||+|.|+|+++.+ ...+|+|++.++
T Consensus 96 Rpd~T~~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e-~~g~~~~~~~g--R~ReF~Q~g~ei~g~~d~~~aDaEvi~l~- 170 (373)
T 3rac_A 96 RPEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRT-DDPASLSWASG--KAAESTQVGIERIGEEASVDVDMDVLRLL- 170 (373)
T ss_dssp CSSSHHHHHHHHHHHHHT-TCCCCEEEEEEEEEECC---------------CEEEEEEEEEECSSCCCHHHHHHHHHHH-
T ss_pred CCcCHHHHHHHHHhcccc-CCCCeEEEEEcceEccC-CCcccccccCC--ccceeEEeeeEEECCCCCHHHHHHHHHHH-
Confidence 999999999999987665 68999999999999999 55 778 9999999999999998 889999987776
Q ss_pred HHHHHHHHhCC--cceEeeCC
Q 015587 156 LYRRIYEEFLA--VPVIKGKK 174 (404)
Q Consensus 156 ~y~~~~~~l~~--ipv~~g~~ 174 (404)
.++++.+|. +.+.+|..
T Consensus 171 --~~~l~~lgl~~~~i~l~~~ 189 (373)
T 3rac_A 171 --HEASAAAGVRHHRIVVSHA 189 (373)
T ss_dssp --HHHHHHHTCCSCEEEEEET
T ss_pred --HHHHHHcCCCceEEEecCH
Confidence 588888874 23455654
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-22 Score=192.76 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=138.4
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCC----------
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGES---------- 74 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~---------- 74 (404)
..++|++.+.+.+.+|++.|++++++ ..+.||+++.||.+.+.++|+ .+||++.|.+.||.+..-.++
T Consensus 51 ~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e-~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~ 128 (346)
T 3mf2_A 51 MGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLE-KSGYLKSFPNLLGCVCGLHGTEREINAAVSR 128 (346)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHH-HTTHHHHCGGGCEEEEEECSCHHHHHHHHHH
T ss_pred cCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHH-hcCCcccChhhcceeecccccchhhhhhhhh
Confidence 45799999999999999999999999 888999999999999999995 599999999999998542110
Q ss_pred ---------C-CCCceeccCCChhHHHHHHHhh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCCh
Q 015587 75 ---------D-LEVPIAIRPTSETVMYPYFSKW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 143 (404)
Q Consensus 75 ---------~-l~~~l~LRPt~e~~i~~~~~~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~ 143 (404)
. .++.++|.||+|++++.++++. +.+ +.|+|+..+++|||+|. ..|++|+|||+|.|+|+ .+++
T Consensus 129 ~~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~Ea--S~GL~RvhqF~kvE~v~-~~tp 203 (346)
T 3mf2_A 129 FDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREP--SKHLDRLQSFRMREYVC-IGTP 203 (346)
T ss_dssp HHTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCC--CSSTTSCSEEEEEEEEE-EESH
T ss_pred hccccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcC--CCCCeeeeeeEEEEEEE-EeCH
Confidence 0 1257999999999999999975 555 45999999999999996 47999999999999999 4689
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCcceE
Q 015587 144 SEADDEVLQILELYRRIYEEFLAVPVI 170 (404)
Q Consensus 144 ~~a~~e~~~~~~~y~~~~~~l~~ipv~ 170 (404)
+++.+|+..+++...++++.|| +|+.
T Consensus 204 Eqs~~e~e~l~~~ae~il~~Lg-Lpyr 229 (346)
T 3mf2_A 204 DDVSDFRERWMVRAQAIARDLG-LTFR 229 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCEE
Confidence 9999999999999999999987 6853
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-19 Score=171.73 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=102.2
Q ss_pred HHHHHHHH--HHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhc
Q 015587 22 ETMQKFFD--AEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 22 ~~i~~~~~--~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
+.|+++++ +.++++||++|.||+|++.++|.+ + .|.|++| +.++|||+.|++++ ++..
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~----------d--~f~d~~g----~~l~LRpd~T~~~a---~~~~- 63 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG----------N--FFLDRKG----NLFSIREDFTKTVL---NHRK- 63 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS----------S--CEEETTS----CEEEECCCHHHHHH---HHHT-
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhhcc----------c--ccCCCCC----CEEEeCCcChHHHH---HHHh-
Confidence 35777788 999999999999999999999953 1 4568877 99999999999888 4433
Q ss_pred cCCC-CCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc--eEeeCC
Q 015587 100 GHRD-LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP--VIKGKK 174 (404)
Q Consensus 100 s~~~-lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip--v~~g~~ 174 (404)
.+++ +|+|+||+|+|||+| +|+. |||+|.|+|+++.+...+|+|++.++ .++++.+|.-. +.+|..
T Consensus 64 ~~~~~~p~R~~y~g~vfR~e-~~~~-----Ref~Q~g~ei~g~~~~~~DaEvi~l~---~~~l~~lgl~~~~i~l~~~ 132 (275)
T 1usy_A 64 RYSPDSQIKVWYADFVYRYS-GSDL-----VAEYQLGLEKVPRNSLDDSLEVLEII---VESASEFFEGPVIVEIGHT 132 (275)
T ss_dssp TCTTCCCEEEECCEEEEEEE-TTEE-----EEEEEEEEEEESCCSHHHHHHHHHHH---HHHHHHHCCSCEEEEEEET
T ss_pred hcCCCCceEEEEeceEEecC-CCCC-----CeeeEeCEEEecCCCchhHHHHHHHH---HHHHHHcCCCCeEEEeCCH
Confidence 3667 999999999999999 4444 99999999999999999999988887 48888887422 445544
|
| >1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=139.37 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=92.4
Q ss_pred CCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC--CCCChhHHHHHHHHcCCCEEEEECccccCCCeEE
Q 015587 204 VASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR--DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVR 281 (404)
Q Consensus 204 iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~--~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~ 281 (404)
--|.||.|+|+++ +..+||.+|++.|+++|+||++|.+ + -++|+|+++|.+.+|||+|+||++|.++|+|+
T Consensus 6 ~~P~Qv~IlpVs~------~~~~YA~~V~~~L~~~GiRvevD~~r~~-e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVs 78 (130)
T 1v95_A 6 SGPVDCSVIVVNK------QTKDYAESVGRKVRDLGMVVDLIFLNTE-VSLSQALEDVSRGGSPFAIVITQQHQIHRSCT 78 (130)
T ss_dssp CCCCTEEEEESSS------GGGHHHHHHHHHHHTTTCCEEEEECTTS-SCHHHHHHHHHHHTCSEEEEECHHHHHHTEEE
T ss_pred CCCCeEEEEEeCc------chHHHHHHHHHHHHHCCCEEEEecCCCC-CcHHHHHHHHHHcCCCEEEEEechHHhcCeeE
Confidence 3589999999983 5789999999999999999999996 6 59999999999999999999999999999999
Q ss_pred EEECCC--CceeeechhhHHHHHHHHHHHHHHH
Q 015587 282 AVRRDN--GAKIDLPRGSLVERVKELLEEVQES 312 (404)
Q Consensus 282 v~~r~~--~~k~~v~~~el~~~i~~~l~~~~~~ 312 (404)
|+.|.. ++...++++++++.+...+..+...
T Consensus 79 VR~r~~~~~e~~~m~lde~i~~l~~~~~~~~~~ 111 (130)
T 1v95_A 79 VNIMFGTPQEHRNMPQADAMVLVARNYERYKNE 111 (130)
T ss_dssp EEECSSSCCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCccCccCHHHHHHHHHHHHHHHhhh
Confidence 999987 7888999999999998777776553
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=152.32 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
..++.+++.+++.+..+||++|.||.|++.++|.+ +||++. .+||.+.+..+ +.++|||+.++.+..+++..+
T Consensus 71 h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~-~g~~~~--~~m~~~~npl~----e~~~LRp~l~p~l~~~~r~~~ 143 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAK-MTIGED--HPLFSQVFWLD----GKKCLRPMLAPNLYTLWRELE 143 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHT-TSSCC----CCTTTSCEEE----TTEEECSCSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhh-cCCCcc--cccEEeecccc----cchhhhhcChHHHHHHHHHHH
Confidence 34789999999999999999999999999999964 677641 14443322222 568999999999888888877
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
.+ +++|+|+|++|+|||+|.. +.+ |+|||+|.++++++........++..++ ..+++.+|.
T Consensus 144 ~~-~~~PlrlfeiG~vFR~E~~-~~~--r~~EF~qle~~i~g~~~~~~f~elkg~l---e~ll~~LGl 204 (288)
T 3dsq_A 144 RL-WDKPIRIFEIGTCYRKESQ-GAQ--HLNEFTMLNLTELGTPLEERHQRLEDMA---RWVLEAAGI 204 (288)
T ss_dssp TT-SCSCEEEEEEEEEECSCCS-SSC--CCSEEEEEEEEEETCCGGGHHHHHHHHH---HHHHHHHTC
T ss_pred hC-CCCCEEEEEEeeEEecCCC-CCC--cCccEEEEEEEEEcCCchhhHHHHHHHH---HHHHHHcCC
Confidence 66 7899999999999999953 555 9999999999999987666666766665 588888874
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-12 Score=123.37 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccccc--CcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~--~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
++.+.+.+++.|...||.||.||+|++.+.|.+ .+... .+.+++|.+. +..+|||+.++.+...++..+
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~-~~~~~~~p~~~~~~~~~--------~~~~LR~slsp~L~~~l~~n~ 149 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLTPNLYNYLRKLD 149 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH-TTCCTTSSGGGGCCEET--------TTEEECSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh-cCCCcCCchhhhheeeC--------CCeeEcccChHHHHHHHHHhh
Confidence 688999999999999999999999999998754 33322 2556788772 579999999999888777654
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
. ....|+|+|++|+|||+| .++.+ |.+||+|.|++.++.+. ...++..++ ..+++.+| +++
T Consensus 150 ~-~~~~p~rlfeiG~vFR~E-~~~~~--~~~Ef~ql~~~~~g~~~--~f~elkg~l---e~ll~~lG-l~~ 210 (290)
T 3qtc_A 150 R-ALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLVFWQMGSGC--TRENLESII---TDFLNHLG-IDF 210 (290)
T ss_dssp T-TSCSSEEEEEEEEEECCC-SCSSS--CCSEEEEEEEEEESTTC--CHHHHHHHH---HHHHHHHT-CCC
T ss_pred c-cCCCCeEEEEEcCEEecC-CCCCc--CcchheEEEEEEEcCCh--HHHHHHHHH---HHHHHHcC-CCc
Confidence 3 357899999999999999 44667 99999999999998764 344555554 58888886 354
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.2e-11 Score=113.57 Aligned_cols=111 Identities=16% Similarity=0.004 Sum_probs=83.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCceEeccCcccCh-hhHhhh-cccccCcccceEEEEecCCCCCCCceeccCCChhHHH
Q 015587 14 RPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQKE-KDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMY 91 (404)
Q Consensus 14 ~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~-~l~~k~-~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (404)
...-+++|..|.+.+++.|.+.||.+|.||+|++. +++.+. .+ ++ .++|.+... + +.++||...+...
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~--e~--a~~f~~~~~-~----~~~~L~~Spe~~~- 80 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG--EG--MEPAEVEIY-G----VKMRLTHSMILHK- 80 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC--CC--CCCCEEEET-T----EEEEECSCSHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCC--Cc--ceeEEEEcC-C----CCEEeccChHHHH-
Confidence 34568899999999999999999999999999998 887654 33 33 567776532 2 5688875444322
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCC--Cccccc-eeEEeceeeecCCh
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT--PFIRSR-EFLWQEGHTAFATK 143 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~--gllR~R-EF~q~e~~~~~~~~ 143 (404)
+..+.+ -|.|+||+|+|||+| +||. + |.+ ||+|.|++.++++.
T Consensus 81 ---~~l~~~---g~~rvf~ig~~FR~E-~pq~~~~--RH~~EFtqle~e~~~~~~ 126 (294)
T 1nnh_A 81 ---QLAIAM---GLKKIFVLSPNIRLE-SRQKDDG--RHAYEFTQLDFEVERAKM 126 (294)
T ss_dssp ---HHHHHT---TCCEEEEEEEEECCC-CGGGCSS--SCCSEEEEEEEEEETCCH
T ss_pred ---HHHhhc---CccceEEEEccEeCC-CCCCCCC--ccccceeEEEEEecCCCH
Confidence 111222 278999999999999 4554 7 888 99999999999873
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=98.93 E-value=7.3e-09 Score=105.02 Aligned_cols=112 Identities=14% Similarity=-0.008 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
.-++++..|.+.+++.|...||.+|.||+|++. .++ + +.++|.+. ..| +.++|| +|......+
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~------~~e--~-~~~~f~~~-~~~----~~~~Lr-~Spel~~~~-- 195 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTG------AVE--G-GATLFKLK-YFD----KYAYLS-QSAQLYLEA-- 195 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC------CSS--C-GGGCCEEE-ETT----EEEEEC-SCSHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee------cCC--C-CceeEEEe-ecC----CcEEec-cChHHHHHH--
Confidence 346789999999999999999999999999865 121 1 34677774 344 779999 332222111
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecCChhhHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEVLQ 152 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~~~~~a~~e~~~ 152 (404)
+.+ -|.|+||+|+|||+| .++.+ |-+ ||+|.|++.++++..+....+..
T Consensus 196 --~~~---g~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~ 245 (434)
T 1x54_A 196 --AIF---GLEKVWSLTPSFRAE-KSRTR--RHLTEFWHLELEAAWMDLWDIMKVEEE 245 (434)
T ss_dssp --HHH---HHSEEEEEEEEECCC-CCCCS--SCCSEEEEEEEEEETCCHHHHHHHHHH
T ss_pred --Hhc---CccceEEEecceecC-CCCCc--ccccEEEEeeEEEcCCCHHHHHHHHHH
Confidence 212 277999999999999 45678 898 99999999999975444433333
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.3e-09 Score=104.03 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|...||.+|.||+|++. .++ + +.++|.+.. .| +.++||...+-..-. +..
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~------~~e--~-~~~~f~~~~-~~----~~~~L~~Spql~~~~-~~~ 197 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIAS------ATE--G-GAQLFPVIY-FG----KEAFLAQSPQLYKEL-MAG 197 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS------CSS--T-TCCCCEEEE-TT----EEEEECSCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEee------CCC--C-CceeEEEec-CC----ceEEecCCcHHHHHH-HHh
Confidence 46789999999999999999999999999875 111 1 346787743 34 779997444432222 221
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
. +-|+||+|+|||+| .++.+ |-+ ||+|.|++.++++..+....+..++
T Consensus 198 ---g----~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~ll 246 (429)
T 1wyd_A 198 ---V----VERVFEVAPAWRAE-ESDTP--FHLAEFISMDVEMAFADYNDVMQLLEKIL 246 (429)
T ss_dssp ---H----HSEEEEEEEEECCC-CCCSS--SCCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ---C----cCceEEEccccccc-CCccc--cccceeeEeeeeecCCCHHHHHHHHHHHH
Confidence 1 67999999999999 45677 888 9999999999998555444444443
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=102.35 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|...||.+|.||+|++.. .+ + +.++|.+. ..| +.++||-..+-. ..++.
T Consensus 124 ~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~-----~e---~-~~~~f~~~-~~g----~~~~L~~Spel~-~~~l~- 187 (422)
T 1n9w_A 124 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG-----AE---G-GSGLFGVD-YFE----KRAYLAQSPQLY-KQIMV- 187 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------------CHHH-HHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC-----CC---C-CceeEEEe-eCC----CcEEeeeCHHHH-HHHHh-
Confidence 467899999999999999999999999998752 11 1 23567663 333 678997333322 22222
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
+ . +-|+||+|+|||+| +++.+ |-+ ||+|.|++.+++ +..+..+.+..++
T Consensus 188 ---~--g-~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~d~~dlm~l~e~ll 238 (422)
T 1n9w_A 188 ---G--V-FERVYEVAPVWRME-EHHTS--RHLNEYLSLDVEMGFIADEEDLMRLEEALL 238 (422)
T ss_dssp ---H--H-HSEEEEEEEC----------------CCEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred ---h--C-CCceeEEeCceECC-CCCCC--cccceeEEeeeeeeCCCCHHHHHHHHHHHH
Confidence 1 1 35999999999999 45678 998 999999999998 7555544444443
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-08 Score=101.07 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-+++|..|.+.+++.|...||.+|.||+|++.. ++ + +-++|.+.. .| +.++||-..+- +.+
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~-----~~---~-ga~~f~~~~-~~----~~~~L~~Spql-----~~k 237 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAP-----SE---G-GSSVFEVTY-FK----GKAYLAQSPQF-----NKQ 237 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----SS---S-SSCCCEEEE-TT----EEEEECSCTHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec-----CC---C-Ccccceecc-CC----ccEEcccChHH-----HHH
Confidence 468899999999999999999999999998853 11 1 236788865 34 78999943332 223
Q ss_pred hh-ccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 97 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i-~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
.+ .+ -+-|+||+|+|||+|. ++.+ |.+ ||+|.|++..+. +..+..+.+..++
T Consensus 238 ~l~~~---g~~rvy~ig~~FR~E~-~~~~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll 292 (487)
T 1eov_A 238 QLIVA---DFERVYEIGPVFRAEN-SNTH--RHMTEFTGLDMEMAFEEHYHEVLDTLSELF 292 (487)
T ss_dssp HHHHT---TCCEEEEEEEEECCCC-CCCT--TCCSEEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred HHHhc---CCCceEEEeccEecCC-CCCC--ccchhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 22 22 2569999999999994 5678 998 999999998554 4555544444444
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=7.7e-08 Score=98.85 Aligned_cols=121 Identities=16% Similarity=0.060 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEe-cCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~-~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-++++..|.+.+++.|...||.+|.||+|.+.. .| -+-++|.+.. ..+ ..++||-..+ ++.
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~G----a~a~~F~~~~~~~~----~~~yLr~Spq-----Lyl 234 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GG----AAARPFITHHNALD----MTLYMRIAIE-----LHL 234 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSSCCCEEEETTTT----EEEEECSCSH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CC----CcccceEecccCCC----ceeEEecCHH-----HHH
Confidence 467899999999999999999999999998641 22 2336777753 334 7899994333 333
Q ss_pred hh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 96 ~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+. +.+ -.-|+||+|+|||+|.. +.. |..||+|.|++.++++..+..+.+..++ ..+++.+
T Consensus 235 k~l~v~---G~~rVyeig~~FR~E~~-~~r--H~pEFT~lE~e~af~d~~dlm~l~E~ll---~~l~~~v 295 (493)
T 3a74_A 235 KRLIVG---GLEKVYEIGRVFRNEGI-STR--HNPEFTMLELYEAYADFRDIMKLTENLI---AHIATEV 295 (493)
T ss_dssp HHHHHT---TCCEEEEEEEEECCCCC-BTT--BCSEEEEEEEEEETCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHhhc---ccCceEEECccccCCCC-Ccc--cCCceeEEEEEecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 33 222 24699999999999965 445 9999999999999998766655555554 3555443
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-07 Score=89.74 Aligned_cols=120 Identities=13% Similarity=-0.000 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC-CCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG-ESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g-~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-++++..|.+.+|+.|...||.+|.||+|.+..- + +-.-+.|.+..-+ ...++..+.|+-..+--.-+++
T Consensus 35 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----~---~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~- 105 (345)
T 3a5y_A 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV-----T---DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL- 105 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC-----C---CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC-----C---CCccceEEEEecCcccccCCCEeecCCHHHHHHHHH-
Confidence 5788999999999999999999999999986431 1 1123445554332 1112245777755442222122
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+ .+ =|+||+|+|||+|.. +.- |..||+|.|.+.++++.++..+.+..++
T Consensus 106 ---~~--g~-~rvyqIg~~FR~E~~-~~r--H~pEFt~lE~e~af~d~~d~m~~~E~li 155 (345)
T 3a5y_A 106 ---VA--GC-GPVFQLCRSFRNEEM-GRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 155 (345)
T ss_dssp ---HT--TC-CSEEEEEEEECCCCC-BTT--BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ---Hc--CC-CcEEEEEcceeCCCC-ccc--ccchhheeeeeeeCCCHHHHHHHHHHHH
Confidence 22 12 299999999999965 556 9999999999999998766655555544
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.1e-07 Score=92.40 Aligned_cols=122 Identities=12% Similarity=0.091 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| -+-++|.+.+.. ++..++||-..+ ++.+
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~-----~G----a~ar~F~t~~~~---~~~~~yL~~Spq-----Lylk 244 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GG----ASARPFITHHNA---LDLDMYLRIAPE-----LYLK 244 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CS----SCCCCCEEEETT---TTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC-----CC----CcccceEeccCC---CCceEEeccCHH-----HHHH
Confidence 457888999999999999999999999998641 22 123567665321 237899985444 2333
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
. +.+ . .=|+||+|+|||+|.. ... |..||+|.|.+.++++..+....+..++ ..+++.+
T Consensus 245 ~L~v~--G-~~rVyeIg~~FR~E~~-~~r--H~pEFt~lE~e~af~d~~dlm~l~E~li---~~~~~~v 304 (504)
T 1e1o_A 245 RLVVG--G-FERVFEINRNFRNEGI-SVR--HNPEFTMMELYMAYADYHDLIELTESLF---RTLAQEV 304 (504)
T ss_dssp HHHHH--T-CCEEEEEEEEECCCCC-CC---CCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHhhc--C-CCcEEEEcccccCCCC-Ccc--ccCceeeeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 3 222 1 3599999999999965 445 9999999999999998776666655555 3455443
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-06 Score=85.51 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|...||.+|.||+|.+... + |+ -++|.+..-| .+++|+...+ ++.+
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---e-g~-----~~~f~~~~~~-----~~~yL~~Spq-----l~~q 196 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---E-GG-----TELFPMKYFE-----EDAFLAQSPQ-----LYKQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---S-CS-----SSCCEEEETT-----EEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC---C-CC-----ccceeEeeCC-----ccEEEecChH-----HHHH
Confidence 4678899999999999999999999999987531 1 22 2356665432 6788876554 2333
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCcccc-ceeEEeceeeecCC-hhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRS-REFLWQEGHTAFAT-KSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~-REF~q~e~~~~~~~-~~~a~~e~~~~~ 154 (404)
.+.. .. -=|+||+|+|||+|.. ..+ |- -||+|.|++.++++ .++..+.+..++
T Consensus 197 ~l~~-~g-~~rvf~i~~~FR~E~~-~t~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li 251 (438)
T 3nem_A 197 IMMA-SG-LDRVYEIAPIFRAEEH-NTT--RHLNEAWSIDSEMAFIEDEEEVMSFLERLV 251 (438)
T ss_dssp HGGG-TT-CCEEEEEEEEECCCSS-CCT--TCCSEEEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred HHHh-cC-CCceEEEcceEECCCC-CCc--ccccceeeeeeeeccCccHHHHHHHHHHHH
Confidence 3321 12 2499999999999954 333 54 49999999999998 777776666655
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.7e-06 Score=83.82 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|..... .|+. ++|.+..- | ..++|+-..+ +|.+
T Consensus 131 ~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~----eG~~-----~~F~~~~~-g----~~~~L~~Spq-----Lylq 191 (435)
T 2xgt_A 131 LLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV----EGGS-----TLFNLDYF-G----EQSFLTQSSQ-----LYLE 191 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS----SCTT-----SCCEEEET-T----EEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC----CCch-----hceeeccC-C----cccccCCChH-----HHHH
Confidence 4678999999999999999999999999976542 2221 34555332 2 6788875443 2323
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.... . -=|+||+|+|||+|.. ... |-. ||+|.|.+.++++.++....+..++
T Consensus 192 ~l~~--g-~~rvfeIg~~FR~E~~-~t~--RH~~EFT~lE~e~af~d~~d~m~~~E~li 244 (435)
T 2xgt_A 192 TCIP--T-LGDVFCIAQSYRAEKS-RTR--RHLAEYAHVEAECPFITLDDLMEKIEELV 244 (435)
T ss_dssp HHHH--H-HCSEEEEEEEECCCSS-CCT--TCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred Hhhh--c-cCceEEEecceecCCC-Ccc--ccccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 2221 1 1389999999999953 334 555 9999999999999877766666655
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=83.03 Aligned_cols=122 Identities=12% Similarity=0.131 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| -+-+.|.+.+. .++..++||-..+- +.+
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gG----a~a~~F~t~~~---~~~~~~yL~~SpqL-----~lk 237 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GG----AVAKPFITYHN---ELDMNLYMRIAPEL-----YHK 237 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSCCCCEEEET---TTTEEEEECSCSHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CC----ccccceeeecc---cCCcceEeeCCHHH-----HHH
Confidence 467788999999999999999999999998631 12 12345544332 12378899866552 333
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
. +.+ .+ =|+||+|++||+|...++ +.-||+|.|.+.++++..+....+..++ ..+++.+
T Consensus 238 ~liv~--g~-~rVyeig~~FR~E~~~tr---H~pEFtmlE~e~af~d~~dlm~l~E~li---~~v~~~v 297 (521)
T 3bju_A 238 MLVVG--GI-DRVYEIGRQFRNEGIDLT---HNPEFTTCEFYMAYADYHDLMEITEKMV---SGMVKHI 297 (521)
T ss_dssp HHHHT--TC-CEEEEEEEEECCSCCBTT---BCSEEEEEEEEEETCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHhc--Cc-CceEEEEcceeCCCCCCc---cchhhhhhhhhhhcCCHHHHHHHHHHHH---HHHHHHH
Confidence 2 222 22 389999999999976443 7889999999999999877776666665 3444443
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-05 Score=80.91 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| -..+.|..... .++.+++||-..+ ++.+
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gG----A~a~pF~t~~n---~~~~~~yL~~Spq-----Lylk 265 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GG----AAAKPFVTHHN---ALDMEMFLRIAPE-----LYLK 265 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSSCCCEEEET---TTTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CC----Ccccccccccc---cCCcceecccCHH-----HHHH
Confidence 467889999999999999999999999998531 22 11234433221 1337788875554 2333
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
. +.+ .+ =|+||+|++||+|...+ -+.-||+|.|.+.++++..+..+.+..++ ..+++.+
T Consensus 266 ~L~v~--G~-~rVyeIg~~FR~E~~~~---rH~pEFtmlE~e~af~d~~dlm~l~E~li---~~v~~~v 325 (529)
T 4ex5_A 266 RLIVG--GF-ERVFEINRNFRNEGVSP---RHNPEFTMMEFYAAYTDYRWLMDFTERLI---RQAAVDA 325 (529)
T ss_dssp HHHHT--TC-SEEEEEEEEECCSCCBT---TBCSEEEEEEEEEETCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHhc--CC-CcEEEeehheecCCCCC---CcccHhHhhhhhhhcCCHHHHHHHHHHHH---HHHHHHH
Confidence 2 212 12 49999999999996533 27889999999999999877776666665 3455444
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=82.37 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec--CCCCCCCceeccCCChhHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS--GESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~--g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-++++..|.+.+|+.|...||.||.||+|....- +|-. + |.+..+ .+ .-++|+- |.. +|
T Consensus 137 ~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~--------eGAr-~-F~v~~~~~~~----~~y~L~q-SPQ----l~ 197 (585)
T 1c0a_A 137 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP--------EGAR-D-YLVPSRVHKG----KFYALPQ-SPQ----LF 197 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSC-C-CEEECSSSTT----CEEECCS-CSH----HH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCCc-c-ceecccccCC----ceEeCcc-CHH----HH
Confidence 3678899999999999999999999999975321 1222 3 555432 12 3455763 332 33
Q ss_pred Hhhh-ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 95 SKWI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 95 ~~~i-~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
.+.+ .+ .+ =|+||+|+|||+|-..+ - |.=||+|.|.+.++++.++..+.+..++ ..+++.+
T Consensus 198 kq~Lmv~--G~-~rvfqI~~~FR~E~~~t-~--r~pEFT~lE~e~af~d~~dvm~~~E~li---~~i~~~v 259 (585)
T 1c0a_A 198 KQLLMMS--GF-DRYYQIVKCFRDEDLRA-D--RQPEFTQIDVETSFMTAPQVREVMEALV---RHLWLEV 259 (585)
T ss_dssp HHHHHHT--TC-CEEEEEEEEECCCCCBT-T--BCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHhc--CC-CceEEEeceeecCCCCC-C--cCcccceeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 3432 22 22 28999999999996533 3 6679999999999999877777666665 3555554
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.5e-05 Score=81.65 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|....- +|-. + |.+..+... +.-++|+-..+ +|.+
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~--------eGAr-~-F~v~~~~~~--~~~y~L~qSPQ-----l~kq 205 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP--------EGAR-D-FLVPYRHEP--GLFYALPQSPQ-----LFKQ 205 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSC-C-CEEECTTST--TEEEECCSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCCC-C-ccccccccC--CceeECccCHH-----HHHH
Confidence 3678889999999999999999999999975321 1222 2 544432110 13455764332 3444
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
. +.+ .+ =|+||+|+|||+|-..+ - |.=||+|.|.+.++++.++....+..++ ..+++.+.
T Consensus 206 ~Lmv~--G~-~rvfqI~~~FR~E~~~~-~--r~pEFT~lE~e~af~d~~dvm~~~E~li---~~i~~~v~ 266 (580)
T 1l0w_A 206 MLMVA--GL-DRYFQIARCFRDEDLRA-D--RQPDFTQLDLEMSFVEVEDVLELNERLM---AHVFREAL 266 (580)
T ss_dssp HHHHT--TC-SEEEEEEEEECCCCCCS-S--CCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHHT
T ss_pred HHHHh--cc-CCeEEEeceeeCCCCCC-C--cCCCccceeeeecCCCHHHHHHHHHHHH---HHHHHHHh
Confidence 3 222 22 28999999999996533 3 6669999999999999877766666665 46666653
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=81.12 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHhcCceEecc-CcccChh-hHh---hhcccccCcccceEEEEec--------------------C
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYF-PLFVSPT-VLQ---KEKDHIEGFAPEVAWVTKS--------------------G 72 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~-P~l~~~~-l~~---k~~g~~~~f~~e~~~~~~~--------------------g 72 (404)
..-.+.+.+.+++.|...||+++.+ |.+++.. .|. ...+|-.--..+.|.+.+. |
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g 303 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhcc
Confidence 3456778889999999999999875 7665532 121 1112210000112444321 1
Q ss_pred CC-----------CCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 73 ES-----------DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 73 ~~-----------~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
+. +..+..+||+...+...+++..+.+..+..|+|+|++|.|||+|. .... ++.+|+|.++-.++.
T Consensus 304 ~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~-~Dat--HlpeFhQlegl~~~~ 380 (508)
T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNET-LDAT--HLAEFHQIEGVVADH 380 (508)
T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSC-CCSS--SCSEEEEEEEEEEEE
T ss_pred ccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCC-CCCC--cCCeEEEEEEEEECC
Confidence 00 001478999999998888888765423468999999999999995 3455 889999999988763
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 142 TKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 142 ~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
. -...++..++ ..+++.+|.
T Consensus 381 ~--v~f~dLKg~L---e~~l~~lG~ 400 (508)
T 3l4g_A 381 G--LTLGHLMGVL---REFFTKLGI 400 (508)
T ss_dssp S--CCHHHHHHHH---HHHHHTTTC
T ss_pred C--CCHHHHHHHH---HHHHHHcCC
Confidence 2 2344555555 477888764
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.6e-05 Score=79.25 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 18 ISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
++++..|.+.+|+.|. ..||.+|.||+|.... ..| -. + |.+.... .+..++|+-..+ +|.+
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st----~~G----A~-~-F~v~~~~---~g~~~~L~qSpq-----l~kq 209 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT----PGG----AK-E-FLVPSRE---PGKFYSLPQSPQ-----QFKQ 209 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC----CSS----SC-C-CEEECSS---TTCEEECCSSTT-----HHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC----CCC----Cc-C-ceecccc---CCcccccccCHH-----HHHH
Confidence 5778899999999996 7999999999997521 122 12 2 4444321 126677764433 2333
Q ss_pred hh-ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i-~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+ .+ .+ =|+||+|+|||+|.. ... |.-||+|.|.+..+++.++....+..++
T Consensus 210 ~l~v~--g~-~rvfqi~~~FR~E~~-~t~--r~pEFt~lE~e~af~d~~d~m~~~E~l~ 262 (617)
T 4ah6_A 210 LLMVG--GL-DRYFQVARCYRDEGS-RPD--RQPEFTQIDIEMSFVDQTGIQSLIEGLL 262 (617)
T ss_dssp HHHHT--SC-SEEEEEEEEECCCSS-CSS--SCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHhc--cc-CcEEEEEhheecccC-CCC--cCcceecceeeecCCCHHHHHHHHHHHH
Confidence 22 12 12 399999999999965 344 8899999999999998777666655555
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=97.98 E-value=5.1e-05 Score=77.13 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|..... +.| .++|.+.-- | .+++|+-..+- +.+
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---eGg------~~~f~~~~~-~----~~~~L~~SpqL-----~lq 215 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---EGG------STLFKLQYF-N----EPAYLTQSSQL-----YLE 215 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC---------------CCCCEEEET-T----EEEEECSCCHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---CCc------ccccccccc-C----CCcccccCHHH-----HHH
Confidence 3688999999999999999999999999976442 111 123444322 2 66778765532 222
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccc-cceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR-SREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR-~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+.. .+ =|+||+|++||+|...+ . | .-||+|.|.+.++++.++..+.+..++
T Consensus 216 ~l~~--g~-~rVyeig~~FR~E~~~t-~--rH~pEFtmlE~e~af~d~~d~m~~~E~li 268 (456)
T 3m4p_A 216 SVIA--SL-GKSFCMLSSYRAEQSRT-V--RHLAEYLHLEAELPFISFEDLLNHLEDLV 268 (456)
T ss_dssp TTHH--HH-SSEEEEEEEECCCSCCC-S--SCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHh--cc-CcEEEEEhheecCCCCC-C--cchHHHHHhHHHHhcCCHHHHHHHHHHHH
Confidence 2211 11 48999999999995322 2 3 359999999999998777766666555
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.5e-05 Score=76.85 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
++++..|.+.+|+.|...||.+|.||+|.+..- + |+. +.|.+...+ .+++|+-..+ ++.+.
T Consensus 244 ~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---e-gga-----~~F~v~~~~-----~~~yL~~Spq-----l~~k~ 304 (548)
T 3i7f_A 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---E-GGS-----NIFEVKYFD-----RKAYLAQSPQ-----LYKQM 304 (548)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------------CCBCSCTH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---C-CCc-----ceeEEecCC-----CceEeccCHH-----HHHHH
Confidence 578899999999999999999999999987641 1 122 234333222 4577775543 23222
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
+.. ..+ =|+||+|+|||+|...+.= -.-||+|.|.+..+. +..+....+..++
T Consensus 305 ll~-~g~-~rVfeI~~~FR~E~~~t~R--Hl~EFtmlE~e~af~~d~~d~m~~~E~li 358 (548)
T 3i7f_A 305 AIM-GDF-RKVFEVGPVFRAENSNTRR--HLTEFEGLDIEMEIVENYHECIDVMEKLF 358 (548)
T ss_dssp HHT-TTC-CEEEEEEEECCCSCCCSSS--CCSCEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred HHh-cCc-CcEEEEeeeEecCCCCCCC--cchhhhchhhhhhhhcCHHHHHHHHHHHH
Confidence 211 122 4999999999999542221 245999999998766 5666666655554
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0005 Score=67.46 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChh-hHhh---hcccccCc-ccceEEEEecCC-------CCCCCceeccCCCh
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQK---EKDHIEGF-APEVAWVTKSGE-------SDLEVPIAIRPTSE 87 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~-l~~k---~~g~~~~f-~~e~~~~~~~g~-------~~l~~~l~LRPt~e 87 (404)
-...+.+.+++.|...||.++.+|.+++.. .|.. ...| ..- ..+.|++..... ...++..+||+...
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~h-par~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~ts 180 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHH-PARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTS 180 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSS-TTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSST
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCC-ccccccccEEEcCccccccccccccccccceeeccch
Confidence 356678889999999999999999998753 2221 1112 000 022344542110 00126678999877
Q ss_pred hHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 88 TVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 88 ~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
+...+.++. ...|+|+|++|.|||.|..... ...||+|.++..++.
T Consensus 181 p~llr~l~~-----~~~piriFEiGrVFR~d~~d~t---H~pEF~qlegl~~g~ 226 (350)
T 1b7y_A 181 PMQVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT---HEAVFHQLEGLVVGE 226 (350)
T ss_dssp HHHHHHHHH-----CCSSEEEEEEEEEECCCCCCSS---CCSEEEEEEEEEEET
T ss_pred HHHHHHHHh-----cCCCeeEEEeeeEEECCCCCCC---CCChhHEEEEEEECC
Confidence 777776655 3579999999999998742222 468999999999886
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00024 Score=73.04 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=57.4
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
..+|||+..+++....+.+. +++..|+|+|++|.|||.|. + +.+ +.+||+|.++-.++.... -.++..++
T Consensus 180 ~svLRTsLlPgLL~~lr~N~-~r~~~pvrLFEIG~VFr~d~-~~d~t--h~~Ef~qLagli~G~~vd--f~dLKgil--- 250 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIA-DKLPLPIKLFSIDRCFRREQ-GEDAT--RLYTYFSASCVLVDEELS--VDDGKAVA--- 250 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTT-TTSCSSEEEEEEEEEECCCT-TCSSS--CCSEEEEEEEEEECSSCC--HHHHHHHH---
T ss_pred ccccCccchhhHHHHHHHHH-hCCCCCeeEEEEeeEEecCc-ccccc--ccceeeEEEEEEECCCCC--HHHHHHHH---
Confidence 37899999887777776664 34578999999999999873 3 445 779999999999886322 23444444
Q ss_pred HHHHHHhCC
Q 015587 158 RRIYEEFLA 166 (404)
Q Consensus 158 ~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 251 E~LL~~LGi 259 (534)
T 2du3_A 251 EALLRQFGF 259 (534)
T ss_dssp HHHHGGGTC
T ss_pred HHHHHHcCC
Confidence 466766653
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00047 Score=66.12 Aligned_cols=107 Identities=14% Similarity=0.041 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhh-Hhhh---ccccc-CcccceEEEEecCCCCCCCceeccCCChhHHHHHH
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKE---KDHIE-GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l-~~k~---~g~~~-~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-.+.+.+.+++.|...||+|+.+|.+.+... |..- ..|-. ... +.+++ .+..+||++..+...+.+
T Consensus 54 ~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~-d~~~l--------~e~~vLRtsl~p~ll~~l 124 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQ-DSFYI--------TDEILMRTHTSPVQARTM 124 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTT-TSCBS--------SSSEEECSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccC-CcEEE--------cCcceeeccCHHHHHHHH
Confidence 3566888899999999999999998877532 2211 01100 000 11222 156789999988888887
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
+.+. ...|+++|++|.|||.|..... ...||+|.++...+.
T Consensus 125 ~~N~---~~~~~riFEiG~Vfr~d~~d~~---h~~Ef~~Le~~~~g~ 165 (294)
T 2rhq_A 125 EKRN---GQGPVKIICPGKVYRRDSDDAT---HSHQFTQIEGLVVDK 165 (294)
T ss_dssp HHTT---TCSCEEEEEEEEEECCCCCBTT---BCSEEEEEEEEEEES
T ss_pred HhcC---CCCCccEEEEcCEEecCCCCCC---CCChhhEEEEEEECC
Confidence 7765 3579999999999997632121 346999999999884
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=68.04 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccccc-CcccceEEEEec---------------------------
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKS--------------------------- 71 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~-~f~~e~~~~~~~--------------------------- 71 (404)
-...+.+.+++.|...||+++..|.+++...-....||-. ...+..|++.+-
T Consensus 58 Pl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~~~ 137 (549)
T 2du7_A 58 PVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEKK 137 (549)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCCS
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccchh
Confidence 3567888899999999999999999987553323344521 122225555521
Q ss_pred ------------CC---CC--------------------------------CCCceeccCCChhHHHHHHHhhhccCCCC
Q 015587 72 ------------GE---SD--------------------------------LEVPIAIRPTSETVMYPYFSKWIRGHRDL 104 (404)
Q Consensus 72 ------------g~---~~--------------------------------l~~~l~LRPt~e~~i~~~~~~~i~s~~~l 104 (404)
+. .+ ..+..+||++..+++....+.+.. ....
T Consensus 138 ~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~~-r~~~ 216 (549)
T 2du7_A 138 ERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIK-KRKL 216 (549)
T ss_dssp SSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTT-TSCS
T ss_pred hhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccccchhHHHHHHHHHh-cCCC
Confidence 00 00 013568999988877776666644 3478
Q ss_pred CeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 105 PLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 105 Plk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
|+|+|.+|.|||.+...... +.+||+|.++-..+.+. .-.++..++ ..+++.+|
T Consensus 217 pvrlFEiGrVFr~D~~~d~t--h~~ef~qLaglv~G~~v--dF~DLKG~L---e~ll~~LG 270 (549)
T 2du7_A 217 PLKLFSIDRCFRREQREDRS--HLMSYHSASCVVVGEDV--SVDDGKVVA---EGLLAQFG 270 (549)
T ss_dssp SEEEEEEEEECCCCSSCSSS--CCSCEEEEEEEEECTTC--CHHHHHHHH---HHHHGGGT
T ss_pred CeEEEEEeeEEecCCcccCc--CCCcceEEEEEEECCCC--CHHHHHHHH---HHHHHHcC
Confidence 99999999999976310223 56999999999888532 223444444 46666665
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0061 Score=63.48 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=53.6
Q ss_pred CceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHH
Q 015587 78 VPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILEL 156 (404)
Q Consensus 78 ~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~ 156 (404)
+.-+||++..+++....+.+.. ....|+++|.+|.|||.+.. ... ...||+|.++-..+.+.. -.++..++
T Consensus 198 ~~sVLRTsLlPGLL~~vr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~vd--F~DLKGvL-- 269 (648)
T 2odr_B 198 SKLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVD--INDGKAIA-- 269 (648)
T ss_dssp CSEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCC--HHHHHHHH--
T ss_pred ccCcccccchhhHHHHHHHHHh-cCCCCeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCCC--HHHHHHHH--
Confidence 3578999988877666666643 34789999999999997631 111 358999999998885221 12333333
Q ss_pred HHHHHHHhCC
Q 015587 157 YRRIYEEFLA 166 (404)
Q Consensus 157 y~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 270 -E~LL~~LGi 278 (648)
T 2odr_B 270 -EGLLSQFGF 278 (648)
T ss_dssp -HHHHHTTTC
T ss_pred -HHHHHHcCC
Confidence 466666653
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0062 Score=63.50 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=53.6
Q ss_pred CceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHH
Q 015587 78 VPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILEL 156 (404)
Q Consensus 78 ~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~ 156 (404)
+.-+||++..+++....+.+.. ....|+++|.+|.|||.+.. ... ...||+|.++-..+.+.. -.++..++
T Consensus 198 ~~sVLRTSLlPGLL~~lr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~vd--F~DLKGvL-- 269 (665)
T 2odr_A 198 SKLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVD--INDGKAIA-- 269 (665)
T ss_dssp CSEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCC--HHHHHHHH--
T ss_pred ccCcccccchhhHHHHHHHHHh-cCCCCeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCCC--HHHHHHHH--
Confidence 3578999988877666666643 34789999999999997631 111 358999999998885221 12333333
Q ss_pred HHHHHHHhCC
Q 015587 157 YRRIYEEFLA 166 (404)
Q Consensus 157 y~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 270 -E~LL~~LGi 278 (665)
T 2odr_A 270 -EGLLSQFGF 278 (665)
T ss_dssp -HHHHHTTTC
T ss_pred -HHHHHHcCC
Confidence 466666653
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0065 Score=63.49 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=53.7
Q ss_pred CceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHH
Q 015587 78 VPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILEL 156 (404)
Q Consensus 78 ~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~ 156 (404)
+.-+||++..+++....+.+.. ....|+++|.+|.|||.+.. ... ...||+|.++-..+.+.. -.++..++
T Consensus 198 ~~sVLRTSLlPGLL~~vr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~vD--F~DLKGvL-- 269 (685)
T 2odr_D 198 SKLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVD--INDGKAIA-- 269 (685)
T ss_dssp CSEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCC--HHHHHHHH--
T ss_pred ccCcccccchhhHHHHHHHHHh-CCCCCeEEEEeccEEecCcccccc---CCCcceEEEEEEECCCCC--HHHHHHHH--
Confidence 3578999988877666666643 34789999999999997631 111 358999999998885221 12333333
Q ss_pred HHHHHHHhCC
Q 015587 157 YRRIYEEFLA 166 (404)
Q Consensus 157 y~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 270 -E~LL~~LGi 278 (685)
T 2odr_D 270 -EGLLSQFGF 278 (685)
T ss_dssp -HHHHHTTTC
T ss_pred -HHHHHHcCC
Confidence 466666653
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0061 Score=63.81 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=53.1
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
.-+||++..+++....+.+.. ....|+|+|.+|.|||.+.. ... ...||+|.++-..+.+.. -.++..++
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~EfhqLeGlv~G~~vD--F~DLKGvL--- 269 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVD--INDGKAIA--- 269 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCC--HHHHHHHH---
T ss_pred cCcccccchhhHHHHHHHHHh-CCCCCeEEEEEeeEEccCcccccc---CCCcceEEEEEEECCCCC--HHHHHHHH---
Confidence 468999988877666666643 34789999999999997631 111 358999999998885221 12333333
Q ss_pred HHHHHHhCC
Q 015587 158 RRIYEEFLA 166 (404)
Q Consensus 158 ~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 270 E~LL~~LGi 278 (701)
T 2odr_C 270 EGLLSQFGF 278 (701)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHcCC
Confidence 466666653
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.018 Score=60.34 Aligned_cols=129 Identities=10% Similarity=0.029 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhh-HhhhcccccCcccceEEEEecCCCCCC-CceeccCCChhHHHHHHHhhh
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDLE-VPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l-~~k~~g~~~~f~~e~~~~~~~g~~~l~-~~l~LRPt~e~~i~~~~~~~i 98 (404)
.+.+.+.+++.+...||+|+.++.|.+.+. +.+ -+.-+.- .+...+.. ++. +.-+||++.-+++....+.+.
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~-l~~~~~~-~~~v~L~N----Pis~e~svmRtsLlpgLL~~l~~N~ 466 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADK-LGVDISA-TKAVHISN----PKTAEFQVARTTLLPGLLKTIAANR 466 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGG-GTSCTTS-SCCCBBSS----CSSGGGSEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHH-hCCCCCC-CCeEEEcC----CCchhHhHHHHHHHHHHHHHHHHHh
Confidence 455678899999999999999999998763 321 1100000 11222221 111 456899999888888887774
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
. +..|+|+|.+|.|||.+..... ..+|+++..+...|... .-.++..++ ..+++.+|
T Consensus 467 ~--~~~~vrlFEiG~Vf~~d~~~~~---~~~e~~~la~~~~g~~~--~f~~lkg~l---e~ll~~lg 523 (589)
T 3l4g_B 467 K--MPLPLKLFEISDIVIKDSNTDV---GAKNYRHLCAVYYNKNP--GFEIIHGLL---DRIMQLLD 523 (589)
T ss_dssp T--SCSCEEEEEEEEEEEECTTSTT---SEEEEEEEEEEEESSSC--CHHHHHHHH---HHHHHHTT
T ss_pred c--CCCceEEEEeeeEEecCCcccc---CCccccEEEEEEECCCC--CHHHHHHHH---HHHHHHcC
Confidence 4 3469999999999997743222 36788888887766432 122333334 36666665
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0021 Score=62.35 Aligned_cols=106 Identities=10% Similarity=0.095 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChh-hHh---hhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHH
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~-l~~---k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
.-...+.+.+++.|...||+++.+|.+++.. .|. ...+|-.--..+.|.+ ++..+||+...+...+.+
T Consensus 107 hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i--------~e~~vLRThtsp~~lr~l 178 (327)
T 3pco_A 107 HPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF--------DTTRLLRTQTSGVQIRTM 178 (327)
T ss_dssp CHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS--------SSSCEECSCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe--------CCCceecccCCHHHHHHH
Confidence 4466788889999999999999999886532 121 1111210000112333 156789998877776665
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
+. ...|++++.+|.|||.+. . .. .+-+|+|.++-.++.
T Consensus 179 ~~-----~~~pirifeiGrVyR~d~-d-~t--h~p~fhqlegl~v~~ 216 (327)
T 3pco_A 179 KA-----QQPPIRIIAPGRVYRNDY-D-QT--HTPMFHQMEGLIVDT 216 (327)
T ss_dssp TT-----CCSSCCBCCEECCBCSCC-B-TT--BCSBCCEEEEEEEET
T ss_pred Hh-----CCCCeeEEeeccEEecCC-C-cc--cCCcccEEEEEEECC
Confidence 43 467999999999999983 2 22 456799998877653
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.13 Score=46.43 Aligned_cols=137 Identities=7% Similarity=0.019 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEe-cCCCCCCCceeccCCChhHHHHHHHhhhc
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~-~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
.+++++.+++.+...||+|+.|-.|.+.+.+.+ .+..+ ..+...+.. -+ ++.-+||++.-+++....+.++.
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~--~~~~v~l~NPls----~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYP--SKNLVMLLNPLS----ADLNCMRQTLLFGGLESIAHNAN 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSC--GGGCEEBSSGGG----CSCCEECSCSHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccC--cCCeEEEeCCcc----hhHHHHHHHhHHHHHHHHHHHhc
Confidence 346788899999999999999999999876632 11100 012223321 11 15567999998888887777653
Q ss_pred cCCCCCeEEEeeeceeecCCCCC---CCccccceeEEeceeeecCCh------hhHHHHHHHHHHHHHHHHHHhC
Q 015587 100 GHRDLPLKLNQWCNVVRWEFSNP---TPFIRSREFLWQEGHTAFATK------SEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 100 s~~~lPlk~~q~~~vfR~E~~~~---~gllR~REF~q~e~~~~~~~~------~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
. +.-++++|++|.||+.+.... .++-..+|..+..+-+.|... ......+..+......++..+|
T Consensus 79 r-~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg 152 (213)
T 3ig2_A 79 R-KNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLG 152 (213)
T ss_dssp -----CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTT
T ss_pred C-CCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhC
Confidence 2 344699999999999763110 111124666665554444211 0111223333334457777775
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.36 Score=43.52 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCC-CCceeccCCChhHHHHHHHhhhc
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l-~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
.+++++.+++.+...||+|+.|-.|.+.+.+.+ .+..+ ..+...+.. ++ ++.=+||++.-+.+....+.++.
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~--~~~~v~l~N----Pls~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHP--REMAVELMN----PLSQELNCMRQTLLFGGLETLSHNLR 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSC--GGGCCBCSS----BSCSSEEEECSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccC--cCCeEEecC----CccHHHHHHHHHhHHHHHHHHHHHHc
Confidence 356788899999999999999999998876632 11000 011111211 11 25567999998888888877754
Q ss_pred cCCCCCeEEEeeeceeecCCCCC---CCccccceeEEeceeeecC
Q 015587 100 GHRDLPLKLNQWCNVVRWEFSNP---TPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 100 s~~~lPlk~~q~~~vfR~E~~~~---~gllR~REF~q~e~~~~~~ 141 (404)
. +.-++++|++|.||+.+.... .++-..+|..+..+-+.|.
T Consensus 79 r-~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~ 122 (213)
T 3ica_A 79 R-KHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQ 122 (213)
T ss_dssp T-TCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEB
T ss_pred C-CCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCC
Confidence 2 333599999999999763210 1111346666665555453
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.3 Score=52.89 Aligned_cols=109 Identities=8% Similarity=-0.037 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccc-eEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE-VAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e-~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
-.+.+.+.+++.+...||+|+.|..|.+.+.+ ..-+ . ..+ .+.+..--. ++.-+||++.-+......+.+.
T Consensus 494 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~--~--~~~~~v~L~NPis---~e~svLRtsLlpgLL~~l~~N~ 565 (795)
T 2rhq_B 494 DRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFA--L--QERPTISLLMPMS---EAHATLRQSLLPHLIEATAYNV 565 (795)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTC--S--SCCCCEECSSCSC---TTSSEECSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhC--C--CCCceEEEcCCCc---hhhhhhhhccHHHHHHHHHHHh
Confidence 35667888999999999999999999887654 2111 0 122 233322111 1456899999988888888775
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
. +...|+++|.+|.|||.+.. ... . +||++..+=..|.
T Consensus 566 ~-r~~~~vrlFEiG~Vf~~d~~-~~~--~-~e~~~la~l~~G~ 603 (795)
T 2rhq_B 566 A-RKNKDVRLYEIGRVFFGNGE-GEL--P-DEVEYLSGILTGE 603 (795)
T ss_dssp H-TTCCCEEEEEEEEEEECCCT-TSC--C-EEEEEEEEEEESE
T ss_pred c-CCCCCeEEEEEeeEEecCCc-ccC--c-chhhEEEEEEEec
Confidence 4 34679999999999996421 111 2 7888877766664
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.39 Score=51.83 Aligned_cols=103 Identities=14% Similarity=-0.001 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhc
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
-.+.+.+.+++.+...||+|+.|-.|.+.+.+.. -+ . ..+.+.+..-=. ++.-+||++.-+.+....+.+..
T Consensus 490 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~-l~---~-~~~~v~L~NPis---~d~svLRtsLlpgLL~~l~~N~~ 561 (785)
T 1b7y_B 490 APYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR-FR---L-DPPRLLLLNPLA---PEKAALRTHLFPGLVRVLKENLD 561 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHH-TT---C-CCCSCEESSCSS---TTSSEECSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHh-cC---C-CCCeEEEcCCCc---hhhhhhhhhhHHHHHHHHHHHhh
Confidence 3566788899999999999999888888765521 11 0 122233332111 14558999998888888887754
Q ss_pred cCC-CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCC
Q 015587 100 GHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 142 (404)
Q Consensus 100 s~~-~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~ 142 (404)
. . ..|+++|.+|.||| + +|+++..+=..|..
T Consensus 562 r-~~~~~vrlFEiG~Vf~-~----------~e~~~lagl~~G~~ 593 (785)
T 1b7y_B 562 L-DRPERALLFEVGRVFR-E----------REETHLAGLLFGEG 593 (785)
T ss_dssp H-SCCSCEEEEEEEEEES-S----------SEEEEEEEEEESSC
T ss_pred c-CCCCCeEEEEEeeeec-c----------ChhhEEEEEEECCC
Confidence 2 3 47999999999998 2 77877777666643
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.51 Score=47.10 Aligned_cols=101 Identities=10% Similarity=-0.008 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhc--------CceEecc-CcccChh-hHhh---hcccccCcccceEEEEecCCCCCCCceeccCCCh
Q 015587 21 WETMQKFFDAEIKKM--------KIQNCYF-PLFVSPT-VLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSE 87 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~--------G~~~i~~-P~l~~~~-l~~k---~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e 87 (404)
...+.+.+++.|... ||+++.+ |.+++.. .|.. ..+|-.--..+.|++ ++..+||....
T Consensus 50 l~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi--------~~~~vLRThts 121 (415)
T 3cmq_A 50 LWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL--------NRTHMLRAHTS 121 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS--------SSSEEECSSGG
T ss_pred HHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEe--------cCCeEEcCCCc
Confidence 455666666666665 8999998 6665433 3321 122210001123333 25689998766
Q ss_pred hHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeee
Q 015587 88 TVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTA 139 (404)
Q Consensus 88 ~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~ 139 (404)
+...++++.. .| |++.+|.|||.+.- ... .+-+|+|.++-.+
T Consensus 122 ~~~~~~l~~~------~~-k~~~~G~VyR~D~~-da~--h~n~fhQ~egv~l 163 (415)
T 3cmq_A 122 AHQWDLLHAG------LD-AFLVVGDVYRRDQI-DSQ--HYPIFHQLEAVRL 163 (415)
T ss_dssp GGHHHHHHTT------CS-EEEEEEEEECCCCC-BTT--BCSEEEEEEEEEE
T ss_pred HHHHHHHHHC------CC-CEEEeeeEEeccch-hhh--hhHHhcCCCcEEE
Confidence 7766766542 36 99999999999842 233 5678888876544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 404 | ||||
| d1hc7a1 | 127 | c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS | 2e-23 | |
| d1nj8a3 | 268 | d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) | 9e-23 | |
| d1hc7a2 | 272 | d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) | 1e-21 | |
| d1nj1a1 | 127 | c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS | 2e-21 | |
| d1g5ha1 | 127 | c.51.1.1 (A:343-469) The aaRS-like accessory subun | 2e-20 | |
| d1nj8a1 | 126 | c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS | 1e-19 | |
| d1nj1a3 | 265 | d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS | 7e-19 | |
| d1nj1a2 | 71 | d.68.5.1 (A:411-481) C-terminal domain of ProRS {A | 1e-17 | |
| d1hc7a3 | 74 | d.68.5.1 (A:404-477) C-terminal domain of ProRS {T | 2e-16 | |
| d1qf6a1 | 110 | c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (Thr | 1e-14 | |
| d1qf6a4 | 291 | d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th | 2e-12 | |
| d1atia1 | 111 | c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS | 3e-12 | |
| d1qe0a1 | 95 | c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (His | 2e-11 | |
| d1nyra1 | 113 | c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (Thr | 4e-10 | |
| d1kmma1 | 99 | c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (His | 2e-09 | |
| d1h4vb1 | 96 | c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (His | 8e-09 | |
| d1wu7a1 | 97 | c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (His | 3e-07 |
| >d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Prolyl-tRNA synthetase (ProRS) domain species: Thermus thermophilus [TaxId: 274]
Score = 92.5 bits (229), Expect = 2e-23
Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 196 KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWK 255
+GL+LPP++A +QV+++P+ YKD + + +A + L G+R + D RD ++PG+K
Sbjct: 1 RGLVLPPRLAPIQVVIVPI-YKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYK 59
Query: 256 YSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFV 315
+ WE+KGVP R+E+GPKDL Q R G + LP +L E + L+ E L+
Sbjct: 60 FHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKE-TLPLAALPEALPGKLDAFHEELYR 118
Query: 316 AAKQRRDA 323
A R+
Sbjct: 119 RALAFRED 126
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Score = 94.5 bits (234), Expect = 9e-23
Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 3/194 (1%)
Query: 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE 59
+ + Y I GC + P+ I + + + FP+ + +L KE +HI+
Sbjct: 17 IYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIK 76
Query: 60 GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF 119
GF EV WVT G++ L+V +A+RPTSET +Y W++ H DLP+K+ Q N R+E
Sbjct: 77 GFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYET 136
Query: 120 SNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 178
+ P IR RE + ++E HTA +TK EA+++V + + +Y++ ++ +P + K+ E +
Sbjct: 137 KHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTL-GIPYLISKRPEWD 195
Query: 179 NSKFVQIGVMVMVH 192
+ +
Sbjct: 196 KFPGAEYTMAFDTI 209
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Score = 91.5 bits (226), Expect = 1e-21
Identities = 88/179 (49%), Positives = 122/179 (68%), Gaps = 1/179 (0%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+ +Y + G ++RP+ +IWE +Q+ D K+ QN YFPLF+ + L+KE +H+EG
Sbjct: 23 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEG 82
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F+PE+A VT +G +LE P+A+RPTSETV+ +SKWIR RDLP LNQW NVVRWE
Sbjct: 83 FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR 142
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEN 179
EFLWQEGHTA AT+ EA++EV ++L +Y R+ E+ A+PVI+G K+E E
Sbjct: 143 TRPFLRT-SEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEK 200
|
| >d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Prolyl-tRNA synthetase (ProRS) domain species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Score = 86.7 bits (214), Expect = 2e-21
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 197 GLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKY 256
GL LPP VA+ QV+++P+ +K A + + +AC +L AG R + D RD + KY
Sbjct: 2 GLCLPPDVAAHQVVIVPIIFKKAA-EEVMEACRELRSRLEAAGFRVHLDDRDIRAG-RKY 59
Query: 257 SHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVA 316
WEM+GVPLR+EIGP+DL RRD G K+ + E ++EL++++ E+L
Sbjct: 60 YEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLRTR 119
Query: 317 AKQRRDA 323
A +R ++
Sbjct: 120 AWERMES 126
|
| >d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.3 bits (208), Expect = 2e-20
Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 1/113 (0%)
Query: 198 LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYS 257
L L P +A ++V + + + + + + + S+ + S +S
Sbjct: 4 LKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHS-SLEQLHS 62
Query: 258 HWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQ 310
++ V + + L N ++ RD K + L + + + L
Sbjct: 63 KYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASAS 115
|
| >d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Prolyl-tRNA synthetase (ProRS) domain species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Score = 81.7 bits (201), Expect = 1e-19
Identities = 43/129 (33%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 196 KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRD--NYSPG 253
KGL+LPP VA +QV+++P+ +K + D +++ E D + PG
Sbjct: 1 KGLILPPIVAPIQVVIVPLIFKGKE-----DIVMEKAKEIYEKLKGKFRVHIDDRDIRPG 55
Query: 254 WKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESL 313
K++ WE+KGVPLRIE+GPKD+ N ++ RRD K + L+E V++ L + E++
Sbjct: 56 RKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENI 115
Query: 314 FVAAKQRRD 322
A ++ +
Sbjct: 116 KNRAWEKFE 124
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Score = 83.4 bits (205), Expect = 7e-19
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE 59
+I+ Y + G ++ P I + K + + + FPL V L KE H++
Sbjct: 15 IIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDRD-HEEVLFPLLVPEDELAKEAIHVK 73
Query: 60 GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF 119
GF EV WVT G S L+ +A+RPTSETVMYP F+ W+R H DLP++ Q N R+E
Sbjct: 74 GFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYET 133
Query: 120 SNPTPFIRSREF-LWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE 176
+ P IR RE ++E HT AT SEA+++V + +E+Y+ + +P + ++
Sbjct: 134 KHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSL-GIPYLITRRPP 190
|
| >d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 71 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: C-terminal domain of ProRS family: C-terminal domain of ProRS domain: C-terminal domain of ProRS species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Score = 74.8 bits (184), Expect = 1e-17
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 325 IQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPE 383
I+ +T +E + +++ +I WC EEE DV+ + + L E
Sbjct: 1 IREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVR-----VDILGIQEEGSGT-- 53
Query: 384 GTLCFASGKPAKKWTYWGRSY 404
C G+ A Y R+Y
Sbjct: 54 ---CINCGREAPYRAYLARTY 71
|
| >d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]} Length = 74 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: C-terminal domain of ProRS family: C-terminal domain of ProRS domain: C-terminal domain of ProRS species: Thermus thermophilus [TaxId: 274]
Score = 71.7 bits (176), Expect = 2e-16
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 328 VKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLC 387
V T++ F EA+ Q LA C ++ E+ ++ T A T C P E E C
Sbjct: 4 VDTYEAFKEAV-QEGFALAFHCGDKACERLIQEETT-----ATTRCVPFEAEP--EEGFC 55
Query: 388 FASGKPAKKWT--YWGRSY 404
G+P+ + ++Y
Sbjct: 56 VRCGRPSAYGKRVVFAKAY 74
|
| >d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 110 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 67.4 bits (164), Expect = 1e-14
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 201 PPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWE 260
P +A VQV+++ + ++ +KL AGIR +D R+ G+K
Sbjct: 2 PTWLAPVQVVIMNITDSQSE------YVNELTQKLSNAGIRVKADLRNEK-IGFKIREHT 54
Query: 261 MKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308
++ VP + G K++ + +V R + ++E++++ +
Sbjct: 55 LRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 102
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Score = 65.1 bits (158), Expect = 2e-12
Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
Query: 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 67
G +I+ ++ F +++K+ + Q P + + G
Sbjct: 20 PGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMD-----RVLWEKTGHWDNYKD 74
Query: 68 VTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-PFI 126
+ S+ I+P + F++ ++ +RDLPL++ ++ + R E S +
Sbjct: 75 AMFTTSSENR-EYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLM 133
Query: 127 RSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164
R R F + H F T+ + DEV + L +Y F
Sbjct: 134 RVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVYDMYSTF 170
|
| >d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 111 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Glycyl-tRNA synthetase (GlyRS), C-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 60.8 bits (147), Expect = 3e-12
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 13/113 (11%)
Query: 203 KVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMK 262
++A ++V VIP+ + I + +L G+ + G Y +
Sbjct: 1 QLAPIKVAVIPLVKNRPE---ITEYAKRLKARLLALGLGRVLYEDTG-NIGKAYRRHDEV 56
Query: 263 GVPLRIEIGPKDLAN---------DQVRAVRRDNGAKIDLPRGSLVERVKELL 306
G P + + + D V RD +I L L ++E L
Sbjct: 57 GTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERL 109
|
| >d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 95 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain species: Staphylococcus aureus [TaxId: 1280]
Score = 58.0 bits (140), Expect = 2e-11
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVP 265
++ + ++ + + L GI+A+ D+ + + G
Sbjct: 4 NLDLFIVTM------GDQADRYAVKLLNHLRHNGIKADKDYL-QRKIKGQMKQADRLGAK 56
Query: 266 LRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
I IG ++L N+++ G + +LVE K+
Sbjct: 57 FTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 95
|
| >d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain species: Staphylococcus aureus [TaxId: 1280]
Score = 54.7 bits (131), Expect = 4e-10
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 200 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW 259
P +A QV +IPV + +D ++L G+R + D R+ G+K
Sbjct: 7 FPTWLAPKQVQIIPV-----NVDLHYDYARQLQDELKSQGVRVSIDDRNEK-MGYKIREA 60
Query: 260 EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308
+M+ +P +I +G K++ N+QV + + + + + + + + +
Sbjct: 61 QMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRL 109
|
| >d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 52.3 bits (125), Expect = 2e-09
Identities = 14/103 (13%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEA--GIRANSDFRDNYSPGWKYSHWEMKG 263
V + ++ A A E+L + G++ ++ + +++ + G
Sbjct: 3 VVDIYLVAS------GADTQSAAMALAERLRDELPGVKLMTNHGGG-NFKKQFARADKWG 55
Query: 264 VPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306
+ + +G ++AN +G + + + S+ ++ LL
Sbjct: 56 ARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 98
|
| >d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 50.3 bits (120), Expect = 8e-09
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 8/101 (7%)
Query: 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVP 265
+ +IP+ T+ E L +RA P +G
Sbjct: 3 GPDLYLIPL------TEEAVAEAFYLAEALR-PRLRAEYALAPR-KPAKGLEEALKRGAA 54
Query: 266 LRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306
+G +L +V R G ++ L R + + + L
Sbjct: 55 FAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 95
|
| >d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.8 bits (108), Expect = 3e-07
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLR 267
V + V ++ KL E G+ + + + + G
Sbjct: 5 SVYICRVGKINSS------IMNEYSRKLRERGMNVTVEIMER-GLSAQLKYASAIGADFA 57
Query: 268 IEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304
+ G +DL V G++ ++ S+VE +
Sbjct: 58 VIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLIS 94
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 404 | |||
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 100.0 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 100.0 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 100.0 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 100.0 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 99.97 | |
| d1nj1a1 | 127 | Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me | 99.97 | |
| d1hc7a1 | 127 | Prolyl-tRNA synthetase (ProRS) domain {Thermus the | 99.97 | |
| d1nj8a1 | 126 | Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M | 99.96 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 99.94 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 99.94 | |
| d1hc7a3 | 74 | C-terminal domain of ProRS {Thermus thermophilus [ | 99.92 | |
| d1nyra1 | 113 | Threonyl-tRNA synthetase (ThrRS), C-terminal domai | 99.91 | |
| d1qf6a1 | 110 | Threonyl-tRNA synthetase (ThrRS), C-terminal domai | 99.91 | |
| d1g5ha1 | 127 | The aaRS-like accessory subunit of mitochondrial p | 99.91 | |
| d1nj1a2 | 71 | C-terminal domain of ProRS {Arhaeon (Methanothermo | 99.9 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 99.89 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 99.88 | |
| d1atia1 | 111 | Glycyl-tRNA synthetase (GlyRS), C-terminal domain | 99.88 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 99.87 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 99.86 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 99.86 | |
| d1kmma1 | 99 | Histidyl-tRNA synthetase (HisRS), C-terminal domai | 99.76 | |
| d1wu7a1 | 97 | Histidyl-tRNA synthetase (HisRS), C-terminal domai | 99.75 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 99.75 | |
| d1qe0a1 | 95 | Histidyl-tRNA synthetase (HisRS), C-terminal domai | 99.74 | |
| d1h4vb1 | 96 | Histidyl-tRNA synthetase (HisRS), C-terminal domai | 99.72 | |
| d1g5ha2 | 290 | The aaRS-like accessory subunit of mitochondrial p | 99.7 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 99.59 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 98.4 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 98.25 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 98.24 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 98.12 | |
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 98.11 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 98.06 | |
| d1v95a_ | 130 | Nuclear receptor coactivator 5 (KIAA1637) {Human ( | 97.73 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 97.7 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 97.19 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 93.11 | |
| d1nj8a2 | 62 | C-terminal domain of ProRS {Archaeon (Methanocaldo | 91.48 |
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=100.00 E-value=1.3e-39 Score=309.79 Aligned_cols=174 Identities=33% Similarity=0.689 Sum_probs=160.9
Q ss_pred CCcc-CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+++ ++++|+++|+|.|+++|++|++++++.++++||++|.||+|.+.++|.+.++|++++.++||.+++.|+...+++
T Consensus 17 L~d~~~~v~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (268)
T d1nj8a3 17 IYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVK 96 (268)
T ss_dssp SCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEE
T ss_pred CcccCCCCCccEEECccHHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhh
Confidence 5665 578999999999999999999999999999999999999999999999888999999999999998877666788
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeE-EeceeeecCChhhHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYR 158 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~-q~e~~~~~~~~~~a~~e~~~~~~~y~ 158 (404)
++||||+|+.++.++++++.|||+||+|+||+++|||||.++..|++|.|||+ |.|+|+++++.+++++++..++++|.
T Consensus 97 ~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~~y~ 176 (268)
T d1nj8a3 97 LALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYK 176 (268)
T ss_dssp EEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCchhHHhhhhhccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888999999997 67788989999999999999999999
Q ss_pred HHHHHhCCcceEeeCCC
Q 015587 159 RIYEEFLAVPVIKGKKS 175 (404)
Q Consensus 159 ~~~~~l~~ipv~~g~~~ 175 (404)
++|++++ +|+..+.++
T Consensus 177 ~if~~l~-l~~~~~~~~ 192 (268)
T d1nj8a3 177 KFFDTLG-IPYLISKRP 192 (268)
T ss_dssp HHHHHHT-CCCEEEEEC
T ss_pred HHHHhcC-cceeecccc
Confidence 9999986 787665544
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=100.00 E-value=3.9e-38 Score=299.13 Aligned_cols=173 Identities=36% Similarity=0.676 Sum_probs=156.3
Q ss_pred CCcc-CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+|+ ++++|++.|+|.|++|++.|++++++.++ .||++|.||+|.+.+.+.++||||++|.++||++++.+....++.
T Consensus 15 lid~~~~~~G~~~~lP~G~~i~~~i~~~~~~~~~-~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~ 93 (265)
T d1nj1a3 15 IIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILD-RDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRK 93 (265)
T ss_dssp CEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHT-TTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEE
T ss_pred CcccCCCCCceEEEcccHHHHHHHHHHHHHHHHH-hcCceehhhhhhhhhhhhhcccccccccccceeeeccCcccccee
Confidence 5776 57899999999999999999999998765 599999999999988666889999999999999987665555688
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeE-EeceeeecCChhhHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYR 158 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~-q~e~~~~~~~~~~a~~e~~~~~~~y~ 158 (404)
++||||+|+.++.++++++.||++||+|++|+|++||+|.++++||+|.|||+ +++.|+++++.++++.++..+++.|.
T Consensus 94 ~~L~pt~~~~~~~~~~~~~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~~~~~ 173 (265)
T d1nj1a3 94 LALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYK 173 (265)
T ss_dssp EEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEeecccccceEEeeeeeeccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCCHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998888999999995 68899999999999999999999999
Q ss_pred HHHHHhCCcceEeeCCC
Q 015587 159 RIYEEFLAVPVIKGKKS 175 (404)
Q Consensus 159 ~~~~~l~~ipv~~g~~~ 175 (404)
++|.+++ +|+.++..+
T Consensus 174 ~~~~~l~-l~~~~~~~~ 189 (265)
T d1nj1a3 174 EFFNSLG-IPYLITRRP 189 (265)
T ss_dssp HHHHHHT-CCCEEEECC
T ss_pred HHHhhcC-CceeEEEcc
Confidence 9999986 787665443
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.5e-35 Score=278.68 Aligned_cols=173 Identities=51% Similarity=0.957 Sum_probs=153.7
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+|+++++|++.|+|.|+++|++|++++++.+.++||++|.||+|.+.++|.+.++|++.+.++||++.+.++...++++
T Consensus 23 l~d~~~~~G~~~~lP~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~ 102 (272)
T d1hc7a2 23 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPL 102 (272)
T ss_dssp SEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEE
T ss_pred CcccCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchh
Confidence 67899999999999999999999999999999999999999999999999977666899999999999998876667899
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+|+||+|+.++.++++++.||++||+|++|++++||+|.++ .|++|.|+|.|.++|.++++.++++.++..+.+.+..+
T Consensus 103 ~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~-~g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (272)
T d1hc7a2 103 AVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRT-RPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARL 181 (272)
T ss_dssp EECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC-BTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccceeehhhceeccccccceeeeeccccccccccc-ccccceEEEEEEhhhhhhcccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999874 68899999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCC
Q 015587 161 YEEFLAVPVIKGKK 174 (404)
Q Consensus 161 ~~~l~~ipv~~g~~ 174 (404)
+.+++..++..|..
T Consensus 182 ~~~~~~~~~~~~~~ 195 (272)
T d1hc7a2 182 AREYAAIPVIEGLK 195 (272)
T ss_dssp HHHHHCCCCEEEEC
T ss_pred HHHhcchhhhcCcc
Confidence 99888777665544
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-35 Score=281.14 Aligned_cols=154 Identities=19% Similarity=0.313 Sum_probs=143.7
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
..+|++.|+|.|++++++|++++++.+.+.||++|.||+|.+.++|. ++|||+.|.++||.+++. + ++++||||
T Consensus 18 ~~~G~~~~lP~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~-~sG~~~~~~~~~~~~~~~-~----~~~~L~Pt 91 (291)
T d1qf6a4 18 EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWE-KTGHWDNYKDAMFTTSSE-N----REYCIKPM 91 (291)
T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHH-HHSHHHHHGGGCEEEEET-T----EEEEECSS
T ss_pred CCCcceEEccCHHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHh-hhchhhhccchhcccccc-c----hhhccccc
Confidence 46999999999999999999999999999999999999999999994 699999999999998764 3 78999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCC-CccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~-gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+|+.++.+|++++.||++||+|+||+++|||+|.++.. ||+|+|||+|.|+|+|+ +++++.+|+..++++|.++|+.+
T Consensus 92 ~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~-~~e~~~~e~~~~~~~~~~i~~~l 170 (291)
T d1qf6a4 92 NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYSTF 170 (291)
T ss_dssp SHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHGGG
T ss_pred CcHHHHHHHHccccchhhcCeeEeecceeeecccccccccccccccceeccceeEe-cchhhHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999988754 99999999999999965 56778899999999999999999
Q ss_pred CC
Q 015587 165 LA 166 (404)
Q Consensus 165 ~~ 166 (404)
|.
T Consensus 171 Gl 172 (291)
T d1qf6a4 171 GF 172 (291)
T ss_dssp TC
T ss_pred CC
Confidence 85
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=3.4e-32 Score=260.84 Aligned_cols=156 Identities=14% Similarity=0.284 Sum_probs=145.3
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|++.|+|.|++++++|++++++.+.+.||++|.||.|.+.++|. ++|||+.|.++||.+.+..+ +++++|+||+
T Consensus 19 g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~-~sG~~~~~~~~~~~~~~~~~---~~~~~L~pt~ 94 (291)
T d1nyra4 19 GAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYK-TSGHWDHYQEDMFPPMQLDE---TESMVLRPMN 94 (291)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHH-HHTHHHHCTTSSCCCEEETT---TEEEEECSSS
T ss_pred cCcceEEehhHHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhh-hhccccccccceEEEeeccc---cccccccccc
Confidence 5899999999999999999999999999999999999999999994 69999999999998865432 2889999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCC-CccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~-gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
|+.++.++++++.||++||+|++|+++|||+|.++.. ||+|+|||+|.|+|+| ++++++.+|+..+++.+.++|+.||
T Consensus 95 e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f-~~~eq~~~e~~~~~~~~~~i~~~lG 173 (291)
T d1nyra4 95 CPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMIIDVYKDFG 173 (291)
T ss_dssp HHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHhhhcEeccccccceEEeeccceeecCCCcccccccceeeeeeeeheee-cCCcccHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999998764 9999999999999996 5888999999999999999999998
Q ss_pred Ccc
Q 015587 166 AVP 168 (404)
Q Consensus 166 ~ip 168 (404)
+|
T Consensus 174 -l~ 175 (291)
T d1nyra4 174 -FE 175 (291)
T ss_dssp -CC
T ss_pred -cC
Confidence 44
|
| >d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Prolyl-tRNA synthetase (ProRS) domain species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=99.97 E-value=4.9e-31 Score=222.92 Aligned_cols=126 Identities=39% Similarity=0.717 Sum_probs=119.2
Q ss_pred CCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECcccc
Q 015587 196 KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDL 275 (404)
Q Consensus 196 ~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~ 275 (404)
.|++||+|+||+||+|||+..++ ..+++.++|.+|++.|+++|++|.+|+++ .++|+||++|++.|+|++|+||++|+
T Consensus 1 ~Gl~~P~~iAP~qV~Iipi~~~~-~~e~~~~~a~~l~~~L~~~gi~v~~D~r~-~~~g~K~~~a~~~giP~~iiiG~ke~ 78 (127)
T d1nj1a1 1 SGLCLPPDVAAHQVVIVPIIFKK-AAEEVMEACRELRSRLEAAGFRVHLDDRD-IRAGRKYYEWEMRGVPLRVEIGPRDL 78 (127)
T ss_dssp SSEECCTTTSSCSEEEEECCSSS-SHHHHHHHHHHHHHHHHTTTCCEEECCCS-SCHHHHHHHHHHEECSEEEEECHHHH
T ss_pred CCccCCcccCCceEEEEEccCCC-chHHHHHHHHHHHHHHHhcCCceEEEecc-chHHHHHHHHHhhcCchheeeccccc
Confidence 48999999999999999997543 23668999999999999999999999997 59999999999999999999999999
Q ss_pred CCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015587 276 ANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDA 323 (404)
Q Consensus 276 ~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~ 323 (404)
++|+|++++|+++++..++++++++.|.+++++||++||++|++++++
T Consensus 79 ~~~~v~l~~r~~~~~~~v~~~~~~~~i~~ll~~i~~~l~~~a~~~~~~ 126 (127)
T d1nj1a1 79 EKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLRTRAWERMES 126 (127)
T ss_dssp TTTEEEEEESSSCCEEEEETTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCEEEEEEcCCCcEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999886
|
| >d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Prolyl-tRNA synthetase (ProRS) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=1.5e-30 Score=219.95 Aligned_cols=127 Identities=35% Similarity=0.662 Sum_probs=117.5
Q ss_pred CCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECcccc
Q 015587 196 KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDL 275 (404)
Q Consensus 196 ~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~ 275 (404)
+|++||+|+||+||+|+|+..++ +.+++.++|.+|++.|+++|+||.+|++.+.++|+|+++|+++|+|++|+||++|+
T Consensus 1 kGl~~P~~lAP~qv~Iipi~~~~-~~~~~~~~a~~i~~~L~~~girv~~Dd~~~~~~g~K~~~a~~~giP~~iiiG~~e~ 79 (127)
T d1hc7a1 1 RGLVLPPRLAPIQVVIVPIYKDE-SRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDL 79 (127)
T ss_dssp TBCCCCTTTCSCSEEEEECCCTT-THHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred CCCCCchhhCCeeEEEEEecCCh-hhHHHHHHHHHHHHHHHHcCCeeEEecccchhHHHHHHHHHhhcCCeeEEechhhh
Confidence 59999999999999999997543 33567899999999999999999999998778999999999999999999999999
Q ss_pred CCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 015587 276 ANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDAC 324 (404)
Q Consensus 276 ~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~ 324 (404)
++|+|++++|++ ++.+++++++++.|.++|++||++||+||++++++|
T Consensus 80 ~~~~v~v~~R~~-~k~~i~~~~~~~~i~~~l~~i~~~l~~ka~~~~~~~ 127 (127)
T d1hc7a1 80 EGGQAVLASRLG-GKETLPLAALPEALPGKLDAFHEELYRRALAFREDH 127 (127)
T ss_dssp HTTEEEEEETTS-CCCEEEGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCceEEEEeccC-CCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999964 567899999999999999999999999999999886
|
| >d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Prolyl-tRNA synthetase (ProRS) domain species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=99.96 E-value=2.6e-29 Score=211.92 Aligned_cols=125 Identities=38% Similarity=0.674 Sum_probs=116.6
Q ss_pred CCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECcccc
Q 015587 196 KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDL 275 (404)
Q Consensus 196 ~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~ 275 (404)
+|++||+|+||+||+|+|+..++ +++.+.++|.+|++.|+ +|++|.+|+++ .++|+||++|+++|+|++|+||++|+
T Consensus 1 kGlv~P~~lAP~qv~Iipi~~~~-~~~~~~~~a~~l~~~L~-~~i~v~~D~~~-~~~g~k~~~a~~~giP~~iiiG~ke~ 77 (126)
T d1nj8a1 1 KGLILPPIVAPIQVVIVPLIFKG-KEDIVMEKAKEIYEKLK-GKFRVHIDDRD-IRPGRKFNDWEIKGVPLRIEVGPKDI 77 (126)
T ss_dssp TBCCCCTTSCSSSEEEEECCCSS-CHHHHHHHHHHHHHHHH-TTSCEEECCSC-SCHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred CCCCCchhhCCceEEEEeccCCC-chHHHHHHHHHHHHHhc-cceeEEeeccc-chHHHHHHHHHHHHHHHHHhcccchh
Confidence 58999999999999999997543 23568899999999995 59999999998 59999999999999999999999999
Q ss_pred CCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015587 276 ANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDA 323 (404)
Q Consensus 276 ~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~ 323 (404)
++|+|++++|+++++..++++++++.+.++|+++|++||+||++.+++
T Consensus 78 ~~~~v~lr~R~~~~~~~v~~~~l~~~i~~~l~~~~~~~~~ka~~~~~~ 125 (126)
T d1nj8a1 78 ENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFEN 125 (126)
T ss_dssp HTTEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEEcCCCceEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998875
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=99.94 E-value=2.1e-27 Score=228.63 Aligned_cols=192 Identities=14% Similarity=0.148 Sum_probs=167.4
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|++.+.+.+.++...|.+++.+.+.+.||++|.+|.|.+.+++ ..+||+..|.+++|++.+ ++++|+||+
T Consensus 45 G~rfy~l~g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~-~~~G~~p~f~~~~y~~~~-------~~~~LipTs 116 (311)
T d1seta2 45 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAF-LGTGHFPAYRDQVWAIAE-------TDLYLTGTA 116 (311)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHH-HHHTCTTTTGGGSCBBTT-------SSEEECSST
T ss_pred cCceEEEECHHHHHHHHHHHHHHHhhhcccceEEeechhhccchh-hhcccccccccccccccc-------cceeecccc
Confidence 578899999999999999999999999999999999999999999 479999999999998742 679999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecC-ChhhHHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~~~y~~~~ 161 (404)
|++++.++++++.++++||+|++++++|||+|.. .++||+|+|||.+.|+|++.. ++++++.+...+++....++
T Consensus 117 E~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~ 196 (311)
T d1seta2 117 EVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEIL 196 (311)
T ss_dssp HHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999963 357999999999999998754 56788888889999999999
Q ss_pred HHhCCcceEeeCCCCcCc-------------------c----------cH------------------------------
Q 015587 162 EEFLAVPVIKGKKSELEN-------------------S----------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~~~ek-------------------f----------~F------------------------------ 182 (404)
++|+ +|+.+...+.++. | +|
T Consensus 197 ~~L~-lpyrvv~~~~~dl~~~a~~~~diE~w~P~~~~y~Ev~S~sn~~d~qsrRl~i~y~~~dg~~~~~htlngT~~ai~ 275 (311)
T d1seta2 197 RLLE-LPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATP 275 (311)
T ss_dssp HHTT-CCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTCEEECTTSCEEECEEEEEEEEEET
T ss_pred HhhC-CcchhccccCCCCchHHHhhhHHHHhHhhcCCcccccCceecchHHHhhcccEEECCCCCEEeEEEecCchhHHH
Confidence 9986 8875543332221 1 11
Q ss_pred HHHHHHHHHcCCCCCCC-CCCCCCCc
Q 015587 183 VQIGVMVMVHGDDKGLM-LPPKVASV 207 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~-lP~~iap~ 207 (404)
|+|++|+|+|+|++|.+ +|+.+.|+
T Consensus 276 R~l~allEn~q~~dG~v~iP~~L~py 301 (311)
T d1seta2 276 RILAMLLENHQLQDGRVRVPQALIPY 301 (311)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHH
T ss_pred HHHHHHHHhccCCCCcEeCChhhhhh
Confidence 99999999999999977 78888884
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=7.8e-28 Score=234.56 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=139.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHH--HhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC---------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEI--KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~--~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g--------- 72 (404)
|+.++|+|+|+|.|.+++++|++++++.+ .+.|+++|.||++.|.++| +.||||+.|.+.|+.+.+.+
T Consensus 25 y~g~~G~y~ygP~G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw-~~SGH~~~f~d~m~~~~~~~~~~~~~~~~ 103 (331)
T d1b76a2 25 YGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVL-HYSGHEATFADPMVDNAKARYWTPPRYFN 103 (331)
T ss_dssp GSCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHH-HHTSHHHHCEEEECBSSSCBCCCCCEEEE
T ss_pred cCCceeEeccCCcHHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHh-ccCccccccCCceeeecccccccCccchh
Confidence 56789999999999999999999999987 5789999999999999999 56999999999998654321
Q ss_pred --------C-CCC-CCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCC
Q 015587 73 --------E-SDL-EVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 142 (404)
Q Consensus 73 --------~-~~l-~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~ 142 (404)
. +.. ++.+++.||++.++..+++.+..||++||++++|+|++||+|.+|..|++|+|||+|.|+|+ +++
T Consensus 104 ~~~~~~~~~~~~~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~-F~~ 182 (331)
T d1b76a2 104 MMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEY-FVR 182 (331)
T ss_dssp CCEEEECSSSCCGGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEE-EEC
T ss_pred hccccccccccccCCcccccCcchhhHHHHHHhHHhccccccchhhhhccceecccccccccccccchhhhhhhhh-hcC
Confidence 0 001 24455556778888888888899999999999999999999999988999999999999999 567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCcc
Q 015587 143 KSEADDEVLQILELYRRIYEEFLAVP 168 (404)
Q Consensus 143 ~~~a~~e~~~~~~~y~~~~~~l~~ip 168 (404)
+++...++...+....+++.++|..+
T Consensus 183 ~~q~~~~~~~~~~~~~~~~~~~g~~~ 208 (331)
T d1b76a2 183 PGEDEYWHRYWVEERLKWWQEMGLSR 208 (331)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred CcchhHHHHHHHHHHHHHHHHhhccc
Confidence 88888888888877777788888655
|
| >d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: C-terminal domain of ProRS family: C-terminal domain of ProRS domain: C-terminal domain of ProRS species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=8.2e-26 Score=171.12 Aligned_cols=72 Identities=28% Similarity=0.565 Sum_probs=65.8
Q ss_pred eeeccCHHHHHHHhcCCCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcce--EEEEee
Q 015587 325 IQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKK--WTYWGR 402 (404)
Q Consensus 325 ~~~~~~~~e~~~~~~~~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~--~~~~~r 402 (404)
+..|+|||||+++|++ |||++||||+.+||++||+++ |||+|||||+++. .+.+|++||+||+. +++|||
T Consensus 1 T~~v~s~defk~~l~~-Gfv~~~wcg~~ecE~~IKeet-----~at~rciP~~~~~--~~~kCi~cGk~a~~~~~v~fAr 72 (74)
T d1hc7a3 1 TRKVDTYEAFKEAVQE-GFALAFHCGDKACERLIQEET-----TATTRCVPFEAEP--EEGFCVRCGRPSAYGKRVVFAK 72 (74)
T ss_dssp EEECSSHHHHHHHTTT-SEEEECCCCCHHHHHHHHHHH-----CCEEEEEESSSCC--CCCBCTTTCCBCCTTSCEEEEC
T ss_pred CeEccCHHHHHHHHHC-CEEEEEecCCHHHHHHHHHHh-----CcEEEEEECCCCC--CCCeeeecCCccccCCEEEEEe
Confidence 4689999999999986 599999999999999999999 9999999999875 34579999999984 799999
Q ss_pred cC
Q 015587 403 SY 404 (404)
Q Consensus 403 sY 404 (404)
||
T Consensus 73 sY 74 (74)
T d1hc7a3 73 AY 74 (74)
T ss_dssp BC
T ss_pred eC
Confidence 99
|
| >d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain species: Staphylococcus aureus [TaxId: 1280]
Probab=99.91 E-value=8.7e-25 Score=180.49 Aligned_cols=105 Identities=22% Similarity=0.343 Sum_probs=96.8
Q ss_pred CCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccC
Q 015587 197 GLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA 276 (404)
Q Consensus 197 Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~ 276 (404)
.+.||+|+||+||+|+|++. +...++|.+|++.|+++||+|++|+++ .++|+||++|++.|+||+|+||++|++
T Consensus 4 ~G~~P~~lAP~qv~iipi~~-----~~~~~~a~~l~~~Lr~~gi~v~~D~~~-~~~g~k~~~a~~~g~p~~iiiG~~E~~ 77 (113)
T d1nyra1 4 KGAFPTWLAPKQVQIIPVNV-----DLHYDYARQLQDELKSQGVRVSIDDRN-EKMGYKIREAQMQKIPYQIVVGDKEVE 77 (113)
T ss_dssp TTCCCTTTCSSCEEEEESSH-----HHHHHHHHHHHHHHHTTTCCEEECCSS-CCHHHHHHHHHHHTCSEEEEECHHHHH
T ss_pred CCCCCcccCCceEEEEEeCc-----HHHhhhHHHHHHHhhhhccceeecccc-cccchHHHHHHHhCceEEEEEcccccc
Confidence 57999999999999999963 456789999999999999999999998 599999999999999999999999999
Q ss_pred CCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 277 NDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 277 ~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
+|+|+|++|+++++..++++++++.|.+.+.
T Consensus 78 ~~~v~vr~~~~~~q~~v~~~e~i~~l~~ei~ 108 (113)
T d1nyra1 78 NNQVNVRQYGSQDQETVEKDEFIWNLVDEIR 108 (113)
T ss_dssp TTEEEEEETTSSCCCEEEHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCcEEEEeHHHHHHHHHHHHH
Confidence 9999999999999999999999887766654
|
| >d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.5e-24 Score=178.11 Aligned_cols=101 Identities=22% Similarity=0.406 Sum_probs=94.3
Q ss_pred CCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCe
Q 015587 200 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQ 279 (404)
Q Consensus 200 lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~ 279 (404)
||+|+||+||+|+|++ ++..++|.+|++.||++||+|.+|+++ .++|+||++|++.|+||+|+||++|+++|+
T Consensus 1 ~P~~laP~Qv~iipi~------~~~~~~a~~i~~~Lr~~gi~v~~d~~~-~~l~~ki~~a~~~g~p~~iiiG~~E~~~~~ 73 (110)
T d1qf6a1 1 FPTWLAPVQVVIMNIT------DSQSEYVNELTQKLSNAGIRVKADLRN-EKIGFKIREHTLRRVPYMLVCGDKEVESGK 73 (110)
T ss_dssp CCTTTCSSCEEEEESS------HHHHHHHHHHHHHHHTTTCCEEEECCS-SCHHHHHHHHHHTTCSEEEEECTTTGGGCC
T ss_pred CCCCcCCceEEEEecc------HHHHHHHHHHHHHHHHhhccccccCCc-cchhHHHHHHHHcCCCEEEEECchHHhCCE
Confidence 7999999999999997 467889999999999999999999998 599999999999999999999999999999
Q ss_pred EEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 280 VRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 280 V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
|+|++|+++++..++++++++.|.+.+.
T Consensus 74 V~ir~~~~~~q~~i~~~e~i~~l~~~i~ 101 (110)
T d1qf6a1 74 VAVRTRRGKDLGSMDVNEVIEKLQQEIR 101 (110)
T ss_dssp EEEEESSSCEEEEECHHHHHHHHHHHHH
T ss_pred EEEEECCCCceEEeeHHHHHHHHHHHHH
Confidence 9999999999999999998777765544
|
| >d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=1.4e-24 Score=182.90 Aligned_cols=117 Identities=20% Similarity=0.185 Sum_probs=104.5
Q ss_pred CCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEE---eCCCCCChhHHHHHHHHcCCCEEEEECccc
Q 015587 198 LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS---DFRDNYSPGWKYSHWEMKGVPLRIEIGPKD 274 (404)
Q Consensus 198 l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~---D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E 274 (404)
|+|||++||+||+|+|+..+ .++..++|.+|++.|+++|++|.+ |+++ .++|+||++|++.|+|++|+||++|
T Consensus 4 L~lpp~lAP~qV~Ii~~~~~---~~e~~~~a~~l~~~L~~~gi~v~~~~~D~~~-~~lg~k~~~a~~~giP~~iiiG~~e 79 (127)
T d1g5ha1 4 LKLHPCLAPIKVALDVGKGP---TVELRQVCQGLLNELLENGISVWPGYSETVH-SSLEQLHSKYDEMSVLFSVLVTETT 79 (127)
T ss_dssp ECCCTTTCSCCEEEEECSSC---HHHHHHHHHHHHHHHHHTTCCEEEGGGSCCC-SCHHHHHHHHHHTTCSEEEEECHHH
T ss_pred EEcCcccCCceEEEEecCCC---CHHHHHHHHHHHHHHHHhcCceeeeeecCCC-cCHHHHHHHHHHhCCcEEEEEcCCc
Confidence 68999999999999999753 267889999999999999999975 5555 5899999999999999999999999
Q ss_pred cCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015587 275 LANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQR 320 (404)
Q Consensus 275 ~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~ 320 (404)
+++|+|+|++|+|+++..++++++.+.|.+.|.+.+. ++.|..+
T Consensus 80 ~~~~~V~ir~r~t~~q~~i~i~~l~~~l~~~l~~~~~--~~~ald~ 123 (127)
T d1g5ha1 80 LENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASN--VAAALDH 123 (127)
T ss_dssp HHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHH--HHGGGTT
T ss_pred cccCEEEEEECCCCceEEEEHHHHHHHHHHHHHcccc--HHHHhhc
Confidence 9999999999999999999999999999999998764 4554443
|
| >d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: C-terminal domain of ProRS family: C-terminal domain of ProRS domain: C-terminal domain of ProRS species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=99.90 E-value=9.6e-25 Score=164.12 Aligned_cols=70 Identities=29% Similarity=0.479 Sum_probs=64.9
Q ss_pred eeeccCHHHHHHHhcC-CCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeec
Q 015587 325 IQIVKTWDEFVEALGQ-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRS 403 (404)
Q Consensus 325 ~~~~~~~~e~~~~~~~-~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rs 403 (404)
|+.++|+|||+++|++ +|||++||||+.+||++||+++ +|++||||++++ .+|++||+||+.+++||||
T Consensus 1 I~~~~t~eE~k~~l~~~~G~v~~~wcg~~ece~~ike~t-----~at~rcip~~~~-----~~Ci~cgk~a~~~v~fArs 70 (71)
T d1nj1a2 1 IREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKV-----RVDILGIQEEGS-----GTCINCGREAPYRAYLART 70 (71)
T ss_dssp EEECSSHHHHHHHHHHHCSEEEEEECCCHHHHHHHHHHH-----TCEEEEEEECSC-----CBCTTTCSBCCEEEEEECB
T ss_pred CeecCCHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHh-----CCeEeeecCCCC-----CcceecCCccceEEEEEee
Confidence 6789999999999985 6799999999999999999999 999999997643 3699999999999999999
Q ss_pred C
Q 015587 404 Y 404 (404)
Q Consensus 404 Y 404 (404)
|
T Consensus 71 Y 71 (71)
T d1nj1a2 71 Y 71 (71)
T ss_dssp C
T ss_pred C
Confidence 9
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=2.5e-23 Score=201.86 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=135.7
Q ss_pred CccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCcee
Q 015587 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
+++.++||+.|++|..+..+++|++.+.+.|+++||++|.||+|++.++|...+| +...++||.|+|.+| +.++
T Consensus 2 ~~~~~~~G~~D~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g--~~~~~~~~~f~D~~g----~~l~ 75 (327)
T d1wu7a2 2 LQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSG--EELLQQTYSFVDKGG----REVT 75 (327)
T ss_dssp CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSC--TTGGGGSCEEECTTS----CEEE
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCc--hhHHHHHhhhhcccc----hhhc
Confidence 4578999999999999999999999999999999999999999999999976666 357789999999988 9999
Q ss_pred ccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
|||+.|+.++++++.... ...|+|+||+|+|||++ +++.| |.|||+|.+++++|.+...+|+|++.++ .+++
T Consensus 76 LRpD~T~~iar~~~~~~~--~~~p~k~~y~g~VfR~~-~~~~g--~~re~~Q~G~EiiG~~~~~~D~Eii~l~---~~~l 147 (327)
T d1wu7a2 76 LIPEATPSTVRMVTSRKD--LQRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPEADAEVIALA---SSIL 147 (327)
T ss_dssp ECSCSHHHHHHHHTTCTT--CCSSEEEEECCEEECCC-CSCSS--CCSEEEEEEEEEESCCSHHHHHHHHHHH---HHHH
T ss_pred ccccccchhhhHhhhhhh--ccccceeeccCcceecc-ccccC--CcchhhhhhhhhcCCcchHHHHHHHHHH---HHHH
Confidence 999999999998866532 36799999999999999 56889 9999999999999999999999998887 4778
Q ss_pred HHhCC
Q 015587 162 EEFLA 166 (404)
Q Consensus 162 ~~l~~ 166 (404)
+.++.
T Consensus 148 ~~~~~ 152 (327)
T d1wu7a2 148 DRLGL 152 (327)
T ss_dssp HHTTT
T ss_pred hcccc
Confidence 87764
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=1.3e-22 Score=196.59 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=128.8
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccc-cCcccceEEEEecCCCCCCCceecc
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHI-EGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~-~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
.++||+.|++|..+..+++|++.+.+.|+++||++|.||+||+.++|....|.. +...+.||.|.|.+| +.++||
T Consensus 3 ~~~kG~rD~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~g----~~l~LR 78 (324)
T d1h4vb2 3 RAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGG----RSLTLR 78 (324)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECTTS----CEEEEC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhccCC----cccccc
Confidence 578999999999999999999999999999999999999999999997766642 346788999999988 999999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+.|+.++++++.......+.|+|++|+|+|||++ +++.| |.|||+|.+++++|.+...||+|++.++ .++++.
T Consensus 79 pD~T~~iar~~~~~~~~~~~~p~r~~Y~g~VfR~~-~~~~g--r~re~~Q~g~EiiG~~~~~ad~Eii~l~---~~~l~~ 152 (324)
T d1h4vb2 79 PEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAE-RPQKG--RYRQFHQVNYEALGSENPILDAEAVVLL---YECLKE 152 (324)
T ss_dssp CCSHHHHHHHHHHTTGGGSSSSEEEEEEEEEECCC-CC------CCEEEEEEEEEESCCCHHHHHHHHHHH---HHHHHH
T ss_pred cccccHHHHHHHHhhhhhhchhhhheeeCcccccC-cccCC--CcceeccccccccCCCChHHHHHHHHHH---HHHHHH
Confidence 99999999987754333346799999999999999 56889 9999999999999999999999998887 478888
Q ss_pred hCC
Q 015587 164 FLA 166 (404)
Q Consensus 164 l~~ 166 (404)
++.
T Consensus 153 l~~ 155 (324)
T d1h4vb2 153 LGL 155 (324)
T ss_dssp TTC
T ss_pred hcc
Confidence 874
|
| >d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Glycyl-tRNA synthetase (GlyRS), C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=1.4e-22 Score=166.52 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=92.5
Q ss_pred CCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCC----
Q 015587 203 KVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAND---- 278 (404)
Q Consensus 203 ~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~---- 278 (404)
.+||+||+|+|+..++ ++..++|.+|++.|+++|++|.+|+++ .++|+||++|+++|+|++|+||++|+++|
T Consensus 1 ~lAP~qv~Iipi~~~~---~~~~~~a~~l~~~L~~~gi~v~~Ddr~-~~~G~K~~~~~~~gvP~~iiIG~kel~~g~~~~ 76 (111)
T d1atia1 1 QLAPIKVAVIPLVKNR---PEITEYAKRLKARLLALGLGRVLYEDT-GNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGT 76 (111)
T ss_dssp GGCSCSEEEEESCSSC---HHHHHHHHHHHHHHHTTCSSCEEECCC-SCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSC
T ss_pred CCCCcEEEEEEccCCC---HHHHHHHHHHHhhhccccceeEeecCC-CCHHHHHHHHHHcCCCEEEEECcHHhhcccccc
Confidence 3799999999997543 678999999999999999999999998 49999999999999999999999999985
Q ss_pred -----eEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 279 -----QVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 279 -----~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
+|+|++|+++++..++++++.+.|.+.|
T Consensus 77 ~~~~ntV~ir~Rd~~~~~~v~i~e~~~~l~~~l 109 (111)
T d1atia1 77 TRLKDTVTVRDRDTMEQIRLHVDELEGFLRERL 109 (111)
T ss_dssp CTTTTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred cccCceEEEEEcCCCceEEEEHHHHHHHHHHHh
Confidence 7999999999999999999999988765
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=4.4e-22 Score=192.49 Aligned_cols=152 Identities=12% Similarity=0.108 Sum_probs=136.2
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccc-cCcccceEEEEecCCCCCCCceec
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHI-EGFAPEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~-~~f~~e~~~~~~~g~~~l~~~l~L 82 (404)
..++||+.|++|..++++++|++.+++.|+++||++|.||+||+.++|....|.. +...+.+|.+.+.+| +.++|
T Consensus 2 ~~~~~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~g----~~l~L 77 (322)
T d1kmma2 2 IQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNG----DSLTL 77 (322)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTTS----CEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhccc----ccccc
Confidence 3689999999999999999999999999999999999999999999997766653 335678999999988 99999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
||+.|+.++++++..... ...|+|++|+|+|||+| +++.| |.|||+|.+++++|.+...+|.|++.++ .++++
T Consensus 78 r~D~T~~iaR~~~~~~~~-~~~p~r~~y~g~v~r~~-~~~~g--r~re~~Q~g~EiiG~~~~~ad~Eii~l~---~~~l~ 150 (322)
T d1kmma2 78 RPEGTAGCVRAGIEHGLL-YNQEQRLWYIGPMFRHE-RPQKG--RYRQFHQLGCEVFGLQGPDIDAELIMLT---ARWWR 150 (322)
T ss_dssp CSCSHHHHHHHHHHTTCS-TTCCEEEEEEEEEECCC-CCBTT--BCSEEEEEEEEEESCCSHHHHHHHHHHH---HHHHH
T ss_pred cccccchhhHHHHhhhhh-hhhhhhHhhcccccccC-CCCCC--ccchhhhhhHHHhccccchhHHHHHHHH---HHHHH
Confidence 999999999998877543 47899999999999999 56889 9999999999999999999999998887 47888
Q ss_pred HhCC
Q 015587 163 EFLA 166 (404)
Q Consensus 163 ~l~~ 166 (404)
.+|.
T Consensus 151 ~lgl 154 (322)
T d1kmma2 151 ALGI 154 (322)
T ss_dssp HHTC
T ss_pred hcCC
Confidence 8874
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=99.86 E-value=1.1e-21 Score=189.35 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=125.9
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccccc-CcccceEEEEecCCCCCCCceecc
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~-~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
--|+|+.|++|..+..++.|++.+++.|+++||++|.||+|++.++|....+..+ ...+++|.|.|.+| +.++||
T Consensus 2 ~lP~g~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~~g----~~l~LR 77 (318)
T d1z7ma1 2 LLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEG----QSITLR 77 (318)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTC----CEEEEC
T ss_pred CCCCchhhhCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecCCc----cEEEee
Confidence 4589999999999999999999999999999999999999999999965444333 34678999999988 999999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+.|+.+++++++. ..+.|.|++|+|+|||+| +++.| |.|||+|.+++++|.+...+|+|++.++ .++++.
T Consensus 78 pD~T~~iaR~~~~~---~~~~~~r~~Y~g~vfR~~-~~~~~--r~rE~~Q~g~EiiG~~~~~ad~Eii~l~---~e~l~~ 148 (318)
T d1z7ma1 78 YDFTLPLVRLYSQI---KDSTSARYSYFGKIFRKE-KRHKG--RSTENYQIGIELFGESADKSELEILSLA---LQVIEQ 148 (318)
T ss_dssp CCSHHHHHHHHHTC---CSCCCEEEEEEEECCCCC-C---------CCEEEEEEEESSCHHHHHHHHHHHH---HHHHHH
T ss_pred ccccchHHHHHHHh---cccCCcccccccceeEEc-ccccc--ccchhhhhheeccccchhhHHHHHHHHH---HHHHHH
Confidence 99999999988653 346899999999999999 45788 9999999999999999999999999887 488888
Q ss_pred hCC
Q 015587 164 FLA 166 (404)
Q Consensus 164 l~~ 166 (404)
+|.
T Consensus 149 lgi 151 (318)
T d1z7ma1 149 LGL 151 (318)
T ss_dssp HTC
T ss_pred hhh
Confidence 874
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.86 E-value=8.3e-22 Score=190.74 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=124.0
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccc-ccCcccceEEEEecCCCCCCCceecc
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~-~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
..|+|+.|++|..+..+++|++.+.+.|+++||++|.||+||+.++|.+..|. .+...+++|.+.|.++ +.++||
T Consensus 3 ~lP~G~rD~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~~----~~~~lr 78 (325)
T d1qe0a2 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGD----RSITLR 78 (325)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHH----CCEEEC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhcccc----cccccc
Confidence 57899999999999999999999999999999999999999999999765553 2446789999999888 899999
Q ss_pred CCChhHHHHHHHh-hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSK-WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 84 Pt~e~~i~~~~~~-~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
|+.++.+.+.+.. ..++..+.|+|+||+|+|||++ +++.| |.|||+|.+++++|.+...||+|++.++ .++++
T Consensus 79 ~d~t~~~~r~~~~~~~~~~~~~p~R~~Y~g~VfR~~-~~~~~--~~rE~~Q~G~EiiG~~~~~ad~Eii~l~---~~~l~ 152 (325)
T d1qe0a2 79 PEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYE-RKQKG--RYRQFNQFGVEAIGAENPSVDAEVLAMV---MHIYQ 152 (325)
T ss_dssp SCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC----------CCEEEEEEEEEESCCCHHHHHHHHHHH---HHHHH
T ss_pred ccccccHHHHHHhhccccccccchhhheecceeeec-cccCC--ccceeeecceeecCCcCcHHHHHHHHHH---HHHHH
Confidence 9999888876554 4455668999999999999999 55889 9999999999999999999999998887 48888
Q ss_pred HhCCcc
Q 015587 163 EFLAVP 168 (404)
Q Consensus 163 ~l~~ip 168 (404)
.+|.-.
T Consensus 153 ~~g~~~ 158 (325)
T d1qe0a2 153 SFGLKH 158 (325)
T ss_dssp HTTCCC
T ss_pred hhCCcC
Confidence 887533
|
| >d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=9.9e-19 Score=140.24 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=88.6
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhC--CCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEE
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEA--GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAV 283 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~--Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~ 283 (404)
+++|+|+|++ ++...+|.++++.||++ |++|++|+++ .++++||++|++.|+|++|+||++|+++|+|+||
T Consensus 3 ~vdv~vi~~~------~~~~~~a~~la~~LR~~~~gi~v~~~~~~-~~l~kq~k~A~~~~~~~~iiiG~~E~~~~~v~vk 75 (99)
T d1kmma1 3 VVDIYLVASG------ADTQSAAMALAERLRDELPGVKLMTNHGG-GNFKKQFARADKWGARVAVVLGESEVANGTAVVK 75 (99)
T ss_dssp SCSEEEECCS------TTHHHHHHHHHHHHHHHSTTCCEEECCSC-CCHHHHHHHHHHHTCSEEEECCHHHHHTTEEEEE
T ss_pred CCEEEEEECC------HHHHHHHHHHHHHHHhcCCCeEEEEeCCC-CCHHHHHHHHHHhCCChhhhcCchhhhccEEEEE
Confidence 4789999997 35789999999999997 9999999987 5999999999999999999999999999999999
Q ss_pred ECCCCceeeechhhHHHHHHHHH
Q 015587 284 RRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 284 ~r~~~~k~~v~~~el~~~i~~~l 306 (404)
+|.+++|..++++++++.|+++|
T Consensus 76 ~l~~~~q~~v~~~el~~~l~~~L 98 (99)
T d1kmma1 76 DLRSGEQTAVAQDSVAAHLRTLL 98 (99)
T ss_dssp ETTTCCEEEEEHHHHHHHHHHHH
T ss_pred ECCCCCEEEEeHHHHHHHHHHHh
Confidence 99999999999999999999876
|
| >d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.75 E-value=2.1e-18 Score=137.77 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=85.3
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRD 286 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~ 286 (404)
.+|+|+|++. ...+++.+|++.||++|++|++|+++ .++++||++|++.|+|++|+||++|+++|+|+||+|.
T Consensus 4 ~~V~i~~~g~------~~~~~~~~l~~~Lr~~gi~v~~d~~~-~~l~kq~~~A~~~~~~~~iiiG~~E~~~~~v~ik~l~ 76 (97)
T d1wu7a1 4 KSVYICRVGK------INSSIMNEYSRKLRERGMNVTVEIME-RGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMY 76 (97)
T ss_dssp CEEEEEEESS------CCHHHHHHHHHHHHTTTCEEEECCSC-CCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETT
T ss_pred ceEEEEEeCH------HHHHHHHHHHHHHHHCCCEEEEECCC-CcHHHHHHHHHhcCCCeEEecCCccccCCceEEEECC
Confidence 5899999985 45689999999999999999999997 5999999999999999999999999999999999999
Q ss_pred CCceeeechhhHHHHHHH
Q 015587 287 NGAKIDLPRGSLVERVKE 304 (404)
Q Consensus 287 ~~~k~~v~~~el~~~i~~ 304 (404)
+|++..++++++++.|.+
T Consensus 77 ~~~q~~v~~~~l~~~l~~ 94 (97)
T d1wu7a1 77 TGSQENVGLDSVVEHLIS 94 (97)
T ss_dssp TCCEEEEEGGGHHHHHHH
T ss_pred CCCEEEEeHHHHHHHHHh
Confidence 999999999999888765
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=2.8e-18 Score=167.13 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=127.8
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHH--hcCceEeccCcccChhhHhhhcccccCcccceEEEEecC---------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK--KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~--~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g--------- 72 (404)
|+.++|+|||.|.|..+.++|.+.+++.|- +-++.+|++|++.|..+| +.|||++.|.+-|-.....|
T Consensus 25 YGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~-kASGHv~~F~D~mv~c~~~~~~~RaD~l~ 103 (394)
T d1atia2 25 YGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVL-HYSGHEATFADPMVDNRITKKRYRLDHLL 103 (394)
T ss_dssp GTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHH-HHTSHHHHCEEEEEEC-------------
T ss_pred ccCcccccCcCccHHHHHHHHHHHHHHHHhhccCCEEEecccccCCHHHh-hhcCCCCCCcccccccCCCCceecchhHH
Confidence 688999999999999999999998888774 468999999999999999 57999999987654321110
Q ss_pred --------------------------------------------------C--CCC--------------------CCce
Q 015587 73 --------------------------------------------------E--SDL--------------------EVPI 80 (404)
Q Consensus 73 --------------------------------------------------~--~~l--------------------~~~l 80 (404)
| .++ ....
T Consensus 104 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t~~~~FNLMF~T~iGp~~~~~~~~ 183 (394)
T d1atia2 104 KEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLA 183 (394)
T ss_dssp -------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEE
T ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhChHhhhhhHHhhCCCCCCCCCcCCcCccchhhhhcccccccccccccee
Confidence 0 001 1246
Q ss_pred eccCCChhHHHHHHHhhhccCC-CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
.|||+...+|.-.|++...+.+ .||+-+.|+|.+||+|..|..|++|+|||.|.|++. ++++.+...-....+..-.+
T Consensus 184 yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~-Fv~P~~~~~~~~yw~~~~~~ 262 (394)
T d1atia2 184 YLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWVEERLK 262 (394)
T ss_dssp EECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHH
T ss_pred EEChhhhhHHHHHHHHHHHHcccCCCceeeeeccccccccCcccCCcccccceeeeeEE-EEeCCcchHHHHHHHHHHHH
Confidence 7999999999888988776554 799999999999999999999999999999999998 56666665555444444457
Q ss_pred HHHHhCC
Q 015587 160 IYEEFLA 166 (404)
Q Consensus 160 ~~~~l~~ 166 (404)
++.++|.
T Consensus 263 f~~~lGi 269 (394)
T d1atia2 263 WWQEMGL 269 (394)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 7888874
|
| >d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain species: Staphylococcus aureus [TaxId: 1280]
Probab=99.74 E-value=2.2e-18 Score=137.10 Aligned_cols=91 Identities=18% Similarity=0.285 Sum_probs=86.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEEC
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 285 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r 285 (404)
.++|+|+|++ ++...+|.+|++.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|
T Consensus 4 ~~dv~ii~~~------~~~~~~a~~i~~~Lr~~gi~v~~d~~~-~~l~kq~~~A~~~~~~~~iiiG~~E~~~~~v~vk~l 76 (95)
T d1qe0a1 4 NLDLFIVTMG------DQADRYAVKLLNHLRHNGIKADKDYLQ-RKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNM 76 (95)
T ss_dssp CCSEEEEECH------HHHHHHHHHHHHHHHTTTCCEEECCSC-CCHHHHHHHHHHTTCSEEEEECHHHHHHTCEEEEET
T ss_pred CCeEEEEEeC------HHHHHHHHHHHHHHHHCCCcEEecCCC-CCHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEEC
Confidence 4689999997 568899999999999999999999987 599999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHHH
Q 015587 286 DNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 286 ~~~~k~~v~~~el~~~i~ 303 (404)
+++++..++++++++.++
T Consensus 77 ~~~~q~~i~~~el~~~l~ 94 (95)
T d1qe0a1 77 TTGESETIELDALVEYFK 94 (95)
T ss_dssp TTCCEEEECTTHHHHHHH
T ss_pred CCCCEEEEeHHHHHHHhc
Confidence 999999999999988875
|
| >d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=1.4e-17 Score=132.69 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=86.2
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRD 286 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~ 286 (404)
.+|+|+|++ ++...++.+|++.||+ |++|++|.++ .++++||++|++.|+|++|+||++|+++|+|+||+|.
T Consensus 4 pdv~iv~~~------~~~~~~a~~i~~~LR~-~~~~~~~~~~-~~l~kq~k~A~~~~~~~~iiiG~~E~~~~~v~vK~l~ 75 (96)
T d1h4vb1 4 PDLYLIPLT------EEAVAEAFYLAEALRP-RLRAEYALAP-RKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLA 75 (96)
T ss_dssp CSEEEEESS------HHHHHHHHHHHHHHTT-TSCEEECSSC-CCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETT
T ss_pred CEEEEEEcC------HHHHHHHHHHHHHHHc-CceEEEECCC-CCHHHHHHHHHHcCCCEEEEecchhHhcCcEEEEECC
Confidence 379999997 5788999999999985 9999999987 6999999999999999999999999999999999999
Q ss_pred CCceeeechhhHHHHHHHHH
Q 015587 287 NGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 287 ~~~k~~v~~~el~~~i~~~l 306 (404)
+++|.+++++++++.|++.|
T Consensus 76 ~~~q~~v~~~el~~~l~~~l 95 (96)
T d1h4vb1 76 TGEQVRLSREEVPGYLLQAL 95 (96)
T ss_dssp TCCEEEEEGGGHHHHHHHHC
T ss_pred CCcEEEEEHHHHHHHHHHhh
Confidence 99999999999999988764
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=1.7e-18 Score=164.68 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=121.7
Q ss_pred CCccE-EeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEE----------------
Q 015587 7 ISGCY-IMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVT---------------- 69 (404)
Q Consensus 7 ~~G~~-~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~---------------- 69 (404)
+.|++ ||.|.|..|.++|.+.+++.|. ....+|.+|-..+.++|. .+||+..|...+....
T Consensus 26 ~~g~~~dyGP~G~~Lk~ni~~~w~~~~v-~~~~~v~~~d~~~~~~~~-~sgh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T d1g5ha2 26 LSGCHARFGPLGVELRKNLASQWWSSMV-VFREQVFAVDSLHQEPGS-SQPRDSAFRLVSPESIREILQDREPSKEQLVA 103 (290)
T ss_dssp HHCCSCCBCHHHHHHHHHHHHHHHHHHT-TTCTTEEECCCCSEECCC-CSSCCCCCEEECHHHHHHHHCC---CHHHHHH
T ss_pred ccccccccCCcHHHHHHHHHHHHHHHHH-hccCceeeccccccccCC-Cccccchhhhccccccccccccccchhhhhhc
Confidence 46776 9999999999999999999874 445688999888889984 6999877754221000
Q ss_pred ---ecCCCCCCCceeccCCChhHHHHHHHhhh-ccCCCCCeEEEeeeceeecCCC---CCCCccccceeEEeceeeecCC
Q 015587 70 ---KSGESDLEVPIAIRPTSETVMYPYFSKWI-RGHRDLPLKLNQWCNVVRWEFS---NPTPFIRSREFLWQEGHTAFAT 142 (404)
Q Consensus 70 ---~~g~~~l~~~l~LRPt~e~~i~~~~~~~i-~s~~~lPlk~~q~~~vfR~E~~---~~~gllR~REF~q~e~~~~~~~ 142 (404)
..+ +...+|||+.++++...|++.. .++++||+++.|+|+|||+|.+ |.+|++|+|||+|.|+|+ +++
T Consensus 104 ~~~~~~----~~~~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~-F~~ 178 (290)
T d1g5ha2 104 FLENLL----KTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTP 178 (290)
T ss_dssp HHHHHH----HHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EEC
T ss_pred ceeccc----cccceeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEE-EeC
Confidence 011 2567899999999999998865 5889999999999999997754 457999999999999998 889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 143 KSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 143 ~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
+++..+++..+++....+++++|.
T Consensus 179 pe~~~~~~~~~~~~~~~~~~~lGi 202 (290)
T d1g5ha2 179 TRTSSQWLDFWLRHRLLWWRKFAM 202 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CcchHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999888999999984
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=2.4e-15 Score=141.84 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhcc
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRG 100 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s 100 (404)
++++.+ +.+.++++||++|.||+|++.+.+ ++ .+ |.|++| +.++|||+.|+.++++++.+
T Consensus 6 ~ek~~s-f~~~~~~~Gy~~i~tP~~E~~e~~---~~-------~~--F~D~~g----~~l~LRpD~T~~iaR~~~~~--- 65 (275)
T d1usya_ 6 FEKVFS-FYSKATKKGFSPFFVPALEKAEEP---AG-------NF--FLDRKG----NLFSIREDFTKTVLNHRKRY--- 65 (275)
T ss_dssp HHHHHH-HHHHHHHTTCEECCCCSEEECSSC---CS-------SC--EEETTS----CEEEECCCHHHHHHHHHTTC---
T ss_pred HHHHHH-HHHHHHHcCCceeecCcccccccc---cc-------ce--eEcCCC----CEEEECCCCcHHHHHHHHHc---
Confidence 455666 446778999999999999987643 22 22 568888 99999999999999988754
Q ss_pred CCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc--eEeeCC
Q 015587 101 HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP--VIKGKK 174 (404)
Q Consensus 101 ~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip--v~~g~~ 174 (404)
..+.|+|+||+|+|||++ ++ +.|||+|.+++++|.+...||+|++.++ .++++.++.-+ +.+|..
T Consensus 66 ~~~~p~k~~Y~g~VfR~~-~~-----~~re~~Q~G~EiiG~~~~~aD~Evi~l~---~~~l~~lgi~~~~i~l~~~ 132 (275)
T d1usya_ 66 SPDSQIKVWYADFVYRYS-GS-----DLVAEYQLGLEKVPRNSLDDSLEVLEII---VESASEFFEGPVIVEIGHT 132 (275)
T ss_dssp TTCCCEEEECCEEEEEEE-TT-----EEEEEEEEEEEEESCCSHHHHHHHHHHH---HHHHHHHCCSCEEEEEEET
T ss_pred CCCCCeeeeEEeeEEEeC-CC-----cccceeecCceeechhhHHHHHHHHHHH---HHHHHhhcccccEEEecCc
Confidence 246799999999999998 32 5799999999999999999999998887 48888887533 345654
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=1.3e-06 Score=83.71 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEe-cCCCCCCCceeccCCChhHHHHHHHh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~-~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
++++..|.+.+|+.|...||.||.||+|....- ++-. +.+.++. ..+ +.+.|+-..+-.+-+
T Consensus 32 lr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~--------~g~~-~~~~~~~~~~~----~~~~L~~Spel~lk~---- 94 (346)
T d1c0aa3 32 LKTRAKITSLVRRFMDDHGFLDIETPMLTKATP--------EGAR-DYLVPSRVHKG----KFYALPQSPQLFKQL---- 94 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSC-CCEEECSSSTT----CEEECCSCSHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccCCCCC--------cccc-ccccccccCCC----ccccCCcCHHHHHHH----
Confidence 468899999999999999999999999965431 1111 2233322 223 566787766532222
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
.+.+ .+ =++||+|++||.|...++ |.-||+|.|.+.++.+..+..+.+..++ ..++.++
T Consensus 95 ll~~--g~-~~Vf~i~~~FR~E~~~~~---H~~EFtmLE~e~a~~~~~~~m~~~E~li---~~l~~~~ 153 (346)
T d1c0aa3 95 LMMS--GF-DRYYQIVKCFRDEDLRAD---RQPEFTQIDVETSFMTAPQVREVMEALV---RHLWLEV 153 (346)
T ss_dssp HHHT--TC-CEEEEEEEEECCCCCBTT---BCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHH
T ss_pred Hhhc--CC-CceEEEeeeccccccCch---hhhHhhhhccccccccHhHhHHHHHHHH---HHHHHHH
Confidence 2222 23 399999999999966443 7789999999999998877776666655 3555554
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=98.25 E-value=6.7e-06 Score=78.30 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.+|.||+|.... +| -..+.|.+....- +.+..|....+-..-.+++
T Consensus 22 ~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~-----~~----~~~~~f~~~~~~~---~~~~yL~~Spql~~k~~l~- 88 (342)
T d1e1oa2 22 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GG----ASARPFITHHNAL---DLDMYLRIAPELYLKRLVV- 88 (342)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CS----SCCCCCEEEETTT---TEEEEECSCSHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCccccC-----CC----CCCcceeecccCC---CcccccchhhHHHHHHHhh-
Confidence 367899999999999999999999999984321 11 1224455543221 2567777666533322222
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+. + =++||+|+|||.|...+ -+.-||+|.|.+.++++..+....+..++
T Consensus 89 ---~g--~-~~vf~i~p~FR~E~~~~---rHl~EFtmlE~e~a~~~~~d~m~~~e~l~ 137 (342)
T d1e1oa2 89 ---GG--F-ERVFEINRNFRNEGISV---RHNPEFTMMELYMAYADYHDLIELTESLF 137 (342)
T ss_dssp ---HT--C-CEEEEEEEEECCCCCCC----CCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred ---hc--c-cceeeeccccccccccc---cchHHHHHHHHHHHhhhhhhHHHhhhHHH
Confidence 21 1 38999999999995433 37889999999999999877766666555
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=98.24 E-value=4.3e-06 Score=80.22 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEE-ecCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVT-KSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~-~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-++++..|.+.+|+.|.+.||-+|.||+|....- ++-. +.+.++ +..+ ..+.|+-..+-.+-++
T Consensus 39 ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~--------eg~~-~~~~~~~~~~~----~~~yL~~Spel~lk~l-- 103 (356)
T d1l0wa3 39 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP--------EGAR-DFLVPYRHEPG----LFYALPQSPQLFKQML-- 103 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSC-CCEEECTTSTT----EEEECCSCSHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCCC--------cccc-cchhhhhcccc----cccCCCcChhHHHHHh--
Confidence 3678999999999999999999999999965321 1111 223322 2222 5566766555322222
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+.+. + =++||+|++||.|...++ +.-||+|.|.+.++.+.++....+..++ ..+++..
T Consensus 104 --l~~g--~-~~Vf~i~~~FRaE~~~t~---H~~EFtmLE~e~~~~~~~~~m~~~E~li---~~v~~~~ 161 (356)
T d1l0wa3 104 --MVAG--L-DRYFQIARCFRDEDLRAD---RQPDFTQLDLEMSFVEVEDVLELNERLM---AHVFREA 161 (356)
T ss_dssp --HHTT--C-SEEEEEEEEECCCCCCSS---CCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHH
T ss_pred --hhcc--c-CcEEEEeccccccccCCc---chhhhhHHHHhhhHHHHHHHHHHHHHHH---HHHHHHH
Confidence 2221 2 399999999999976553 7789999999999999877766665554 3555544
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.12 E-value=1.4e-05 Score=74.58 Aligned_cols=123 Identities=15% Similarity=0.001 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhh-HhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l-~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-.+++..|.+.+|+.|.+.||.||.||++.+..- ... .+..++. ..+.+.- -| +++.|+...+-.+=++
T Consensus 13 il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~-~~~~~~~--~~~~~~~-~~----~~~yL~~SPel~lk~l-- 82 (293)
T d1nnha_ 13 TLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWP-DPAGEGM--EPAEVEI-YG----VKMRLTHSMILHKQLA-- 82 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCS-CTTCCCC--CCCEEEE-TT----EEEEECSCSHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCC-ccccCcc--ccccccC-CC----ceeecccChhhhHHHH--
Confidence 3678999999999999999999999999875210 000 0000111 2233322 22 6788887665322222
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.. .+ =|+||+|++||+|.....+--..-||+|.|.+..+++.++....+..++
T Consensus 83 --la~--g~-~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li 136 (293)
T d1nnha_ 83 --IAM--GL-KKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLV 136 (293)
T ss_dssp --HHT--TC-CEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred --HHh--cc-ccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHH
Confidence 222 23 2899999999999421211113459999999998888776665555544
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.11 E-value=1.5e-05 Score=76.07 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
++++..|.+.+|+.|.+.||.||.||+|.+..- .| +.+.|.++..+ .+..|+-..+-.+-++.
T Consensus 44 lr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~----eg-----~~~~f~~~~~~-----~~~yL~~Spel~lk~ll--- 106 (353)
T d1eova2 44 FRIQAGVCELFREYLATKKFTEVHTPKLLGAPS----EG-----GSSVFEVTYFK-----GKAYLAQSPQFNKQQLI--- 106 (353)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS----SS-----SSCCCEEEETT-----EEEEECSCTHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccCCCCC----cc-----hhccccceeeC-----Ccceeccchhhhhhhhh---
Confidence 568889999999999999999999999966421 12 22456665543 45668766654332332
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCC-hhhHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT-KSEADDEVLQI 153 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~-~~~a~~e~~~~ 153 (404)
.+. + =++||+|+|||+|...+ . -..-||+|.|.+.++.+ .++....+..+
T Consensus 107 -~~g--~-~~vf~I~~~FR~E~~~~-~-rH~pEFtmLE~y~a~~d~~~~i~~~~e~l 157 (353)
T d1eova2 107 -VAD--F-ERVYEIGPVFRAENSNT-H-RHMTEFTGLDMEMAFEEHYHEVLDTLSEL 157 (353)
T ss_dssp -HTT--C-CEEEEEEEEECCCCCCC-T-TCCSEEEEEEEEEECSSCTHHHHHHHHHH
T ss_pred -hcc--c-ccceeechhhhcccccc-c-cccchhcccccccccchhhHHHHHHHHHH
Confidence 221 2 28999999999995322 1 02359999999998876 35554443333
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=98.06 E-value=1.9e-05 Score=74.74 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-.+++..|.+.+|+.|...||.||.||+|..... .|+ .+.+.+... + +.+.|+-..|-.+-++
T Consensus 33 ~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~----~~~-----~~~f~~~~~-~----~~~yL~~SpE~~lkrl--- 95 (335)
T d1b8aa2 33 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT----EGG-----TELFPMKYF-E----EDAFLAESPQLYKEIM--- 95 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCC----SSS-----SSCCEEEET-T----EEEEECSCSHHHHHHG---
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccCccCC----chh-----hhhcccccc-c----cccccccChHHHHHHH---
Confidence 4678999999999999999999999999966432 122 234555543 3 6788986665333222
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccc-cceeEEeceeeec-CChhhHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR-SREFLWQEGHTAF-ATKSEADDEVLQI 153 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR-~REF~q~e~~~~~-~~~~~a~~e~~~~ 153 (404)
+.+. + =++||+|+|||+|...+ . | .-||+|.+.+... .+..+....+..+
T Consensus 96 -l~~g--~-~~if~i~~~FR~e~~~~-~--rh~~Ef~~le~~~~~~~~~~~l~~~~e~~ 147 (335)
T d1b8aa2 96 -MASG--L-DRVYEIAPIFRAEEHNT-T--RHLNEAWSIDSEMAFIEDEEEVMSFLERL 147 (335)
T ss_dssp -GGTT--C-CEEEEEEEEECCCSSCC-S--SCCSEEEEEEEEEESCSSHHHHHHHHHHH
T ss_pred -Hhhh--h-hhHHHhhcccccccccc-c--ccchHHHhhhHHHHHHHhhhhHHHHHHHH
Confidence 3332 2 39999999999995422 2 3 3499999777655 3444444433333
|
| >d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: Class II aaRS ABD-related family: Anticodon-binding domain of Class II aaRS domain: Nuclear receptor coactivator 5 (KIAA1637) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00014 Score=57.77 Aligned_cols=100 Identities=15% Similarity=0.097 Sum_probs=83.9
Q ss_pred CCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEe-CCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEE
Q 015587 204 VASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSD-FRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRA 282 (404)
Q Consensus 204 iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D-~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v 282 (404)
..|.+..||.++. +..+||..|..+|++.|++|++- ...+.+++.-+.+....|.||+|+|-++..+-+++||
T Consensus 6 s~P~DCeIivvnk------~~~~YAe~Ie~rL~~~Gl~vd~lf~n~dv~l~~aL~~vs~~G~~faIlVt~qn~~~~S~Tv 79 (130)
T d1v95a_ 6 SGPVDCSVIVVNK------QTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTV 79 (130)
T ss_dssp CCCCTEEEEESSS------GGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEE
T ss_pred CCCcceEEEEECC------ccchHHHHHHHHHHhcCCEEEEEecCCcccHHHHHHHHHhCCCceEEEEeccchhhcceEe
Confidence 3578888988874 46789999999999999999864 3445689999999999999999999999999999999
Q ss_pred EECCC--CceeeechhhHHHHHHHHHHHH
Q 015587 283 VRRDN--GAKIDLPRGSLVERVKELLEEV 309 (404)
Q Consensus 283 ~~r~~--~~k~~v~~~el~~~i~~~l~~~ 309 (404)
.-+.. .+...+|++|....|..-.+.+
T Consensus 80 nIL~g~pqEHRNMPleDAl~lva~~f~~y 108 (130)
T d1v95a_ 80 NIMFGTPQEHRNMPQADAMVLVARNYERY 108 (130)
T ss_dssp EECSSSCCEEEEEEHHHHHHHHHHHHHHH
T ss_pred eeecCChHHHHCCCHHHHHHHHHHHHHHH
Confidence 99874 3567899999888887666543
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=97.70 E-value=9.6e-05 Score=68.78 Aligned_cols=103 Identities=10% Similarity=0.104 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-.+++..|.+.+|+.|...||-||.||+|....- .|+ .+++.+...+ .++.|+...+- +-++++.
T Consensus 14 ~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~----e~~-----~~~f~~~~~~-----~~~~L~~Spel-~k~ll~~ 78 (304)
T d1n9wa2 14 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA----EGG-----SGLFGVDYFE-----KRAYLAQSPQL-YKQIMVG 78 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------------CHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCC----CCC-----CceECCcccc-----cchhccccHHH-HHHHhhc
Confidence 4678999999999999999999999999965421 121 2344443322 55777765552 3333332
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCCh
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 143 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~ 143 (404)
. +. ++||+|+|||.|...+.- ..-||+|.|.+..+...
T Consensus 79 g------~~-~if~i~~~FR~ee~~~~r--h~~EF~~le~~~~~~~~ 116 (304)
T d1n9wa2 79 V------FE-RVYEVAPVWRMEEHHTSR--HLNEYLSLDVEMGFIAD 116 (304)
T ss_dssp H------HS-EEEEEEEC---------------CCEEEEEEEESCSS
T ss_pred c------cc-cceeehhhcccccccccc--cccHHHHHHHHHhhhhh
Confidence 2 11 799999999998532221 35699999999876544
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=97.19 E-value=0.0018 Score=58.60 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChh-hH---hhhcccccCcccceEEEEecC-------CCCCCCceeccCCChhH
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPT-VL---QKEKDHIEGFAPEVAWVTKSG-------ESDLEVPIAIRPTSETV 89 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~-l~---~k~~g~~~~f~~e~~~~~~~g-------~~~l~~~l~LRPt~e~~ 89 (404)
...+.+.+++.|...||+++..|.++... -| .-...|-.=-..+.|.+.+.+ .++....++||.-.++.
T Consensus 19 l~~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~~ 98 (266)
T d1jjca_ 19 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 98 (266)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcHH
Confidence 45677788889999999999999887541 11 111223211112345565432 11223567898744444
Q ss_pred HHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 90 MYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 90 i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
..+++.+. ..|+++...|.|||.|.-. .- .+.+|+|.|+-.++..-.. +.+..++ ..+++.++
T Consensus 99 q~r~~~~~-----~~p~~~~~~g~VyRrd~iD-~t--H~p~FhQ~eg~~vd~~~~~--~~Lk~~l---~~~~~~~f 161 (266)
T d1jjca_ 99 QVRYMVAH-----TPPFRIVVPGRVFRFEQTD-AT--HEAVFHQLEGLVVGEGIAM--AHLKGAI---YELAQALF 161 (266)
T ss_dssp HHHHHHHS-----CSSEEEEEEEEEECCSCCC-SS--CCSEEEEEEEEEEETTCCH--HHHHHHH---HHHHHHHH
T ss_pred HHHHHhcc-----CCCceEEecccceecCCCC-Cc--ccccceeeeeeeccccccH--HHHHHHH---HHHHHHhc
Confidence 44444332 3599999999999998532 23 7889999999987654333 3444444 35555553
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=93.11 E-value=0.22 Score=42.46 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCC-CCceeccCCChhHHHHHHHhhhcc
Q 015587 22 ETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYFSKWIRG 100 (404)
Q Consensus 22 ~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l-~~~l~LRPt~e~~i~~~~~~~i~s 100 (404)
....+.+++.+...||+|+.|-.|.+.+...+ .+. .++...+.. ++ ++.=+||++.-+.+....+.++..
T Consensus 18 ~~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~-~~~----~~~~i~l~N----Pis~e~~~lR~sLlpgLL~~~~~N~~r 88 (207)
T d1jjcb5 18 YRKEQRLREVLSGLGFQEVYTYSFMDPEDARR-FRL----DPPRLLLLN----PLAPEKAALRTHLFPGLVRVLKENLDL 88 (207)
T ss_dssp HHHHHHHHHHHHHHTCEECCCCSEECTTHHHH-TTC----CCCSCEESS----CSSGGGSEECSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcchhcCCCcCCHHHHHh-hcC----CCCcEEEeC----CcchhhhhhhhhcchHHHHHHHhCccc
Confidence 34567788888899999999999998887633 221 222233332 11 145579999999988888877643
Q ss_pred CCCCCeEEEeeeceeecC
Q 015587 101 HRDLPLKLNQWCNVVRWE 118 (404)
Q Consensus 101 ~~~lPlk~~q~~~vfR~E 118 (404)
...-++++|++|+||+..
T Consensus 89 ~~~~~~~lFEiG~vf~~~ 106 (207)
T d1jjcb5 89 DRPERALLFEVGRVFRER 106 (207)
T ss_dssp SCCSEEEEEEEEEEESSS
T ss_pred ccccceeeEeeeeeeecc
Confidence 222358999999999765
|
| >d1nj8a2 d.68.5.1 (A:394-455) C-terminal domain of ProRS {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: C-terminal domain of ProRS family: C-terminal domain of ProRS domain: C-terminal domain of ProRS species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=91.48 E-value=0.21 Score=33.24 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=40.0
Q ss_pred cCHHHHHHHhc-CCCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 329 KTWDEFVEALG-QRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 329 ~~~~e~~~~~~-~~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
.+.++++.+|. ++|++++|+..+.- .++++++. .|+++|.- -...+.|.-+||+|
T Consensus 7 ~~~~~iK~~Lse~kGviLvP~~E~iY-nEEfEe~i-----dAsvLG~T---------------~Y~Gk~YIsiAkTY 62 (62)
T d1nj8a2 7 INPDEIKNILSEKRGVILVPFKEEIY-NEELEEKV-----EATILGET---------------EYKGNKYIAIAKTY 62 (62)
T ss_dssp CCHHHHHHHTTTTCSEEEEECCGGGC-SHHHHHHH-----SSCEEEEE---------------ECSSSEEEEEECBC
T ss_pred CCHHHHHHHHhhcCCEEEEeccHHHh-hHHHHHhh-----hhheeeee---------------eecCceEEEEEecC
Confidence 34778999985 57899999976543 34677778 88998842 13345788888888
|