Citrus Sinensis ID: 015623

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MSNISVFLIFFFSLLIPNLVSSSSIQDPELVAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYFRQSGAGASSTYARASSLNARPSTLVGPMTMRAGALNCRKGSRC
ccccEEEHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHccccEEEEEEEcEEEEEcEEEEEccccEEEccccEEEEEEcccEEEEEcccEEEEEEEEcccccccccccccccccccccccccccEEEEEccccEEEEcccccccccccEEEEEccEEEEEEEEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccEEEccccEEEEEccccEEEEEcEEEEcccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEcccEEEEEEccEEEEEEEccEEccccccHHHcccccEEEEccEEEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEccccccccccccccccccccHHHHHHHHHccccccccccccc
MSNISVFLIFFFSLLipnlvssssiqdpelvAQDVHRSINASRRNLaylscgtgnpiddcwrcdpnwegnrqRLADCAIGfgrdaiggrngriyvvtdsgddnptnpkpgtlrhaviqdeplwiIFNRDMVIKLNQELVmnshktidgrgasvhiadgpcitihFATNIIihgihihdckkagngnirdspehsgwwdasdgdgvsifssqhiwidhcslsncqdglidaihgstaitisnnyfthHDKVmllghsdsytqdkNMQATIAFNHFGEGlvqrmprcrqgyfhvvnndytewqmyaiggsaaptinsqgnrffapnerfrkevtkhedapesewrnwnwrsegdlmlngayfrqsgagassTYARAsslnarpstlvgpmtmragalncrkgsrc
MSNISVFLIFFFSLLIPNLVSSSSIQDPELVAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFgrdaiggrnGRIYVVtdsgddnptnpkpgtlrhaviQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVtkhedapesewrnwnWRSEGDLMLNGAYFRQSGAGASSTYARASSlnarpstlvgpmtmragalncrkgsrc
MsnisvflifffslliPNLVSSSSIQDPELVAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYFRQSGAGASSTYARASSLNARPSTLVGPMTMRAGALNCRKGSRC
***ISVFLIFFFSLLIPNLVSSSSIQDPELVAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVT**************LRHAVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIR***EHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTIN****RFF********************WRNWNWRSEGDLMLNGAYFR******************************************
***ISVFLIFFFSLLIPNLVSSSSIQDPELVAQDV*****************TGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYFRQSGAGASSTYARASSLNARPSTLVGPMTMRAGALNCRKGSRC
MSNISVFLIFFFSLLIPNLVSSSSIQDPELVAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKE***********WRNWNWRSEGDLMLNGAYFRQSG*********ASSLNARPSTLVGPMTMRAGALNCRKGSRC
*SNISVFLIFFFSLLIPNLVSSSSIQDPELVAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYFRQSG***************************************
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iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSNISVFLIFFFSLLIPNLVSSSSIQDPELVAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYFRQSGAGASSTYARASSLNARPSTLVGPMTMRAGALNCRKGSRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
P24396404 Probable pectate lyase P1 N/A no 0.945 0.943 0.810 0.0
O24554401 Pectate lyase OS=Zinnia e N/A no 0.937 0.942 0.825 1e-180
Q9LTZ0412 Putative pectate lyase 11 yes no 0.997 0.975 0.75 1e-179
Q9FXD8408 Probable pectate lyase 5 no no 0.960 0.948 0.772 1e-178
Q93Z25432 Probable pectate lyase 22 no no 0.997 0.930 0.726 1e-175
Q9C5M8408 Probable pectate lyase 18 no no 1.0 0.987 0.746 1e-174
Q944R1470 Probable pectate lyase 15 no no 0.935 0.802 0.699 1e-166
Q9M8Z8416 Probable pectate lyase 8 no no 0.942 0.913 0.706 1e-160
Q940Q1431 Probable pectate lyase 1 no no 0.942 0.881 0.683 1e-155
Q9LJ42440 Probable pectate lyase 10 no no 0.942 0.863 0.685 1e-153
>sp|P24396|PLY18_SOLLC Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1 Back     alignment and function desciption
 Score =  637 bits (1642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/385 (81%), Positives = 343/385 (89%), Gaps = 4/385 (1%)

Query: 23  SSIQDPELVAQDVHRSINAS--RRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIG 80
           SSIQDPELV QDVHRSINAS  RRNL YLSCG+GNPID      P         + CAIG
Sbjct: 20  SSIQDPELVVQDVHRSINASLTRRNLGYLSCGSGNPIDRLLAMQPQLGKKSPAFSYCAIG 79

Query: 81  FGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLNQELVM 140
           FG++AIGG+NGRIYVVTDSG+D+P NPKPGTLRHAVIQDEPLWIIF RDMVI+L QELVM
Sbjct: 80  FGKNAIGGKNGRIYVVTDSGNDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVIQLKQELVM 139

Query: 141 NSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDAS 200
           NS+KTIDGRGASVHI+ GPCITIH  +NIIIHGI+IHDCK++GNGNIRDSP HSGWWD S
Sbjct: 140 NSYKTIDGRGASVHISGGPCITIHHTSNIIIHGINIHDCKQSGNGNIRDSPNHSGWWDVS 199

Query: 201 DGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYT 260
           DGDG+SIF  ++IW+DHCSLSNC DGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDS+T
Sbjct: 200 DGDGISIFGGKNIWVDHCSLSNCHDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSFT 259

Query: 261 QDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRF 320
           QDK MQ T+AFNHFGEGLVQRMPRCR GYFHVVNNDYT W+MYAIGGSAAPTINSQGNRF
Sbjct: 260 QDKGMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRF 319

Query: 321 FAPNERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYFRQSGAGA--SSTYARASSLN 378
            APNE++RKEVTKHEDAPES+WR+WNWRSEGDLMLNGAYFRQ+GAGA  SSTYARASSL+
Sbjct: 320 LAPNEKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLS 379

Query: 379 ARPSTLVGPMTMRAGALNCRKGSRC 403
           ARPS+LVG +T  AG +NC+KGSRC
Sbjct: 380 ARPSSLVGSITTNAGPVNCKKGSRC 404
May have a role in the development of the transmitting tissue of the style and/or in the events related to pollination such as some aspect in the facilitation of compatible pollen tube growth.
Solanum lycopersicum (taxid: 4081)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|O24554|PLY_ZINEL Pectate lyase OS=Zinnia elegans PE=1 SV=1 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
224060175403 predicted protein [Populus trichocarpa] 1.0 1.0 0.856 0.0
255572022396 Pectate lyase precursor, putative [Ricin 0.975 0.992 0.823 0.0
357496997404 Pectate lyase [Medicago truncatula] gi|3 0.997 0.995 0.790 0.0
7547009398 pectate lyase [Vitis vinifera] 0.955 0.967 0.833 0.0
225452244403 PREDICTED: probable pectate lyase 22 [Vi 0.955 0.955 0.836 0.0
224121874403 predicted protein [Populus trichocarpa] 0.960 0.960 0.819 0.0
356573714 1273 PREDICTED: uncharacterized protein LOC10 0.987 0.312 0.816 0.0
449483809418 PREDICTED: putative pectate lyase 11-lik 0.955 0.921 0.825 0.0
449450042418 PREDICTED: putative pectate lyase 11-lik 0.955 0.921 0.825 0.0
225456814458 PREDICTED: probable pectate lyase 5-like 0.960 0.844 0.816 0.0
>gi|224060175|ref|XP_002300069.1| predicted protein [Populus trichocarpa] gi|222847327|gb|EEE84874.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/403 (85%), Positives = 372/403 (92%)

Query: 1   MSNISVFLIFFFSLLIPNLVSSSSIQDPELVAQDVHRSINASRRNLAYLSCGTGNPIDDC 60
           MS +++ LIFFFS   P+ V SSSIQDPELV Q+VHRSINASRRNL YLSCGTGNPIDDC
Sbjct: 1   MSRLAILLIFFFSAPAPHFVFSSSIQDPELVVQEVHRSINASRRNLGYLSCGTGNPIDDC 60

Query: 61  WRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDE 120
           WRCDPNWE NRQRLADCAIGFG++AIGGRNGRIYVVTDSG+D+  NPKPGTLRHAVIQDE
Sbjct: 61  WRCDPNWERNRQRLADCAIGFGKNAIGGRNGRIYVVTDSGNDDAVNPKPGTLRHAVIQDE 120

Query: 121 PLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCK 180
           PLWIIF RDMVI+L QELVMNS+KTIDGRGASVHIA GPCITIH+ATNIIIHGIHIHDCK
Sbjct: 121 PLWIIFKRDMVIQLRQELVMNSYKTIDGRGASVHIAGGPCITIHYATNIIIHGIHIHDCK 180

Query: 181 KAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITIS 240
           + GNG+IRDSP HSGWW  SDGDGVSIF+S+HIW+DHCSLSNC DGLIDAIHGSTAITIS
Sbjct: 181 QGGNGDIRDSPRHSGWWTPSDGDGVSIFASKHIWVDHCSLSNCHDGLIDAIHGSTAITIS 240

Query: 241 NNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEW 300
           NN+ THHDKVMLLGHSDSYTQDK+MQ TIAFNHFGEGLVQRMPRCR GYFHVVNNDYT W
Sbjct: 241 NNFMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW 300

Query: 301 QMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYF 360
           +MYAIGGSA+PTINSQGNRF APN RF KEVTKHEDAPESEWR+WNWRSEGDLMLNGAYF
Sbjct: 301 EMYAIGGSASPTINSQGNRFLAPNRRFNKEVTKHEDAPESEWRHWNWRSEGDLMLNGAYF 360

Query: 361 RQSGAGASSTYARASSLNARPSTLVGPMTMRAGALNCRKGSRC 403
           RQSGAGASS+YARA SL+ARPS+LVG MT+ +G LNCRKGSRC
Sbjct: 361 RQSGAGASSSYARAYSLSARPSSLVGSMTLTSGVLNCRKGSRC 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572022|ref|XP_002526952.1| Pectate lyase precursor, putative [Ricinus communis] gi|223533704|gb|EEF35439.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357496997|ref|XP_003618787.1| Pectate lyase [Medicago truncatula] gi|355493802|gb|AES75005.1| Pectate lyase [Medicago truncatula] gi|388493768|gb|AFK34950.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|7547009|gb|AAF63756.1|AF243475_1 pectate lyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452244|ref|XP_002268976.1| PREDICTED: probable pectate lyase 22 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121874|ref|XP_002318694.1| predicted protein [Populus trichocarpa] gi|222859367|gb|EEE96914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356573714|ref|XP_003555002.1| PREDICTED: uncharacterized protein LOC100810380 [Glycine max] Back     alignment and taxonomy information
>gi|449483809|ref|XP_004156698.1| PREDICTED: putative pectate lyase 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449450042|ref|XP_004142773.1| PREDICTED: putative pectate lyase 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225456814|ref|XP_002275781.1| PREDICTED: probable pectate lyase 5-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.940 0.919 0.784 1.3e-173
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.955 0.943 0.770 3.3e-173
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.960 0.948 0.772 1.8e-172
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.955 0.891 0.740 3.3e-166
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.942 0.911 0.709 5.6e-155
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.942 0.913 0.706 4e-154
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.935 0.802 0.699 5.1e-154
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.942 0.881 0.683 1.1e-151
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.942 0.863 0.685 5.5e-148
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.950 0.847 0.641 2.6e-141
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1687 (598.9 bits), Expect = 1.3e-173, P = 1.3e-173
 Identities = 298/380 (78%), Positives = 335/380 (88%)

Query:    25 IQDPELVAQDVHRSI-NASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGR 83
             +QDP LV  DV+RS+ NASRR+LAYLSC TGNPIDDCWRCDPNWE NRQRLADCAIGFG+
Sbjct:    33 VQDPNLVVDDVNRSVFNASRRSLAYLSCRTGNPIDDCWRCDPNWETNRQRLADCAIGFGK 92

Query:    84 DAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLNQELVMNSH 143
             +AIGGR GRIYVVTD  +D+P NP+PGTLR+AV Q+EPLWIIF RDMVI+L +EL++ S 
Sbjct:    93 NAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIRLKKELIITSF 152

Query:   144 KTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGD 203
             KTIDGRG+SVHI DGPC+ IH+ATNIIIHGI+IHDCK    G I+D P H+GWW  SDGD
Sbjct:   153 KTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQSDGD 212

Query:   204 GVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDK 263
              V+IF  +H+WIDHCSLSNC DGLIDAIHGSTAITISNN+ THHDKVMLLGHSDSYTQDK
Sbjct:   213 AVAIFGGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDK 272

Query:   264 NMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAP 323
             NMQ TIAFNHFGEGLVQRMPRCR GYFHVVNNDYT W+MYAIGGSA+PTI SQGNRF AP
Sbjct:   273 NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAP 332

Query:   324 NERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYFRQSGAGASSTYARASSLNARPST 383
             N RF KEVTKHEDAPES+WR+WNWRSEGD++LNGAYFR+SGA A STYARASSL+ARPS+
Sbjct:   333 NTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSS 392

Query:   384 LVGPMTMRAGALNCRKGSRC 403
             LVG +T  AG L+CR+G RC
Sbjct:   393 LVGSITTTAGTLSCRRGRRC 412
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LTZ0PLY11_ARATH4, ., 2, ., 2, ., 20.750.99750.9757yesno
P40972PLY_TOBAC4, ., 2, ., 2, ., 20.54150.90810.9219N/Ano
P40973PLY_LILLO4, ., 2, ., 2, ., 20.56880.93300.8663N/Ano
Q93Z25PLY22_ARATH4, ., 2, ., 2, ., 20.72660.99750.9305nono
Q9FXD8PLY5_ARATH4, ., 2, ., 2, ., 20.77260.96020.9485nono
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.82530.93790.9426N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.81030.94540.9430N/Ano
Q9M8Z8PLY8_ARATH4, ., 2, ., 2, ., 20.70680.94290.9134nono
Q9C5M8PLY18_ARATH4, ., 2, ., 2, ., 20.74631.00.9877nono
P15721PLY56_SOLLC4, ., 2, ., 2, ., 20.51070.90810.9195N/Ano
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.57560.90070.8084N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.983
4th Layer4.2.2.20.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_I2215
hypothetical protein (403 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00011207
hypothetical protein (558 aa)
  •  •  0.924
gw1.XIII.724.1
pectinesterase family protein (EC-3.1.1.11) (512 aa)
  •  •  0.922
eugene3.00030462
hypothetical protein (580 aa)
  •  •  0.921
eugene3.00140126
hypothetical protein (514 aa)
  •  •  0.921
eugene3.00280097
RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)
  •  •  0.920
estExt_fgenesh4_pm.C_LG_VII0457
pectinesterase family protein (EC-3.1.1.11) (340 aa)
  •  •  0.920
eugene3.00021342
hypothetical protein (514 aa)
  •  •  0.920
gw1.X.3259.1
pectinesterase family protein (EC-3.1.1.11) (555 aa)
  •  •  0.919
eugene3.00140717
pectinesterase family protein (EC-3.1.1.11) (561 aa)
  •  •  0.919
fgenesh4_pm.C_LG_II000883
hypothetical protein (450 aa)
  •  •  0.919

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
smart00656190 smart00656, Amb_all, Amb_all domain 1e-79
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 1e-72
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 2e-29
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  242 bits (621), Expect = 1e-79
 Identities = 102/207 (49%), Positives = 122/207 (58%), Gaps = 28/207 (13%)

Query: 129 DMVIKLNQ--ELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGN 186
           D+ I L+    +++NS+KTIDGRG+ V I  G  +TI   +N+II  + IHD K      
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPVYG-- 57

Query: 187 IRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQ---------DGLIDAIHGSTAI 237
                        SDGD +SI  S ++WIDH SLS C          DGLID  +GST +
Sbjct: 58  -------------SDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 238 TISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDY 297
           TISNNYF +H KVMLLGHSDS T D  M+ TIA N+FG  L QR PR R GY HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 298 TEWQMYAIGGSAAPTINSQGNRFFAPN 324
           T W  YAIGG    TI S+GN F AP 
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.89
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.4
PLN02218431 polygalacturonase ADPG 98.15
PLN03003456 Probable polygalacturonase At3g15720 98.12
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.9
PLN02793443 Probable polygalacturonase 97.86
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.82
PLN02155394 polygalacturonase 97.81
PLN03010409 polygalacturonase 97.78
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.68
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.6
PLN02218431 polygalacturonase ADPG 97.49
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.41
PLN02155394 polygalacturonase 97.38
PLN02480343 Probable pectinesterase 97.29
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.25
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.25
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.16
PLN02197588 pectinesterase 97.08
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.04
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.95
smart00656190 Amb_all Amb_all domain. 96.91
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.9
PLN02793443 Probable polygalacturonase 96.88
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.75
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.73
PLN03003456 Probable polygalacturonase At3g15720 96.73
PLN03010409 polygalacturonase 96.67
PLN02176340 putative pectinesterase 96.5
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.34
PLN02682369 pectinesterase family protein 96.19
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.92
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.85
PLN02432293 putative pectinesterase 95.76
PLN02773317 pectinesterase 95.76
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.69
PLN02665366 pectinesterase family protein 95.68
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.66
PLN02217670 probable pectinesterase/pectinesterase inhibitor 95.48
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.37
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.29
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.27
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.23
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.14
PLN02301548 pectinesterase/pectinesterase inhibitor 95.11
PLN02916502 pectinesterase family protein 95.06
PLN02634359 probable pectinesterase 95.05
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.04
PLN02304379 probable pectinesterase 94.97
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.92
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.84
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.78
PLN02314586 pectinesterase 94.69
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.68
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.67
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.64
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.58
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 94.54
PRK10531422 acyl-CoA thioesterase; Provisional 94.32
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 94.05
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.03
PLN02497331 probable pectinesterase 93.72
PLN02671359 pectinesterase 93.43
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 91.63
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 88.5
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 86.95
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 86.73
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 83.89
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-58  Score=442.93  Aligned_cols=271  Identities=32%  Similarity=0.370  Sum_probs=221.3

Q ss_pred             CCcCCCCCeEEEEcCCCCCCCCCCCchhHHHhhhcCCCeEEEEeeceEEEeC------ceeeecCCcEEEeeCCeEEEeC
Q 015623           84 DAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLN------QELVMNSHKTIDGRGASVHIAD  157 (403)
Q Consensus        84 ~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~l~------~~L~i~snkTI~G~ga~i~I~~  157 (403)
                      +||||.||++++|++.+|          |...++..+|.++|+-+.|+|.+.      .+|.+.|||||.|.|++.+|. 
T Consensus        47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~-  115 (345)
T COG3866          47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV-  115 (345)
T ss_pred             CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence            799999999999999988          889999999996666667899987      467789999999999999999 


Q ss_pred             CCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEe-eCCccEEEEeeeecC--------CCCCee
Q 015623          158 GPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSI-FSSQHIWIDHCSLSN--------CQDGLI  228 (403)
Q Consensus       158 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi-~gs~nVWIDHcs~s~--------~~Dgli  228 (403)
                      |.+|.|+.+.|||||||+|++...++                ...|+|+| ..++|||||||+|+.        ..||++
T Consensus       116 g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~  179 (345)
T COG3866         116 GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV  179 (345)
T ss_pred             eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence            55799999999999999999875321                12699999 679999999999999        789999


Q ss_pred             eeeeCCceEEEEcceeccCCeeeecCCCCCc-cCCcceeEEEEeeEecCCCcCCCcccCCCeEEEEcceeeCCcc--eee
Q 015623          229 DAIHGSTAITISNNYFTHHDKVMLLGHSDSY-TQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQM--YAI  305 (403)
Q Consensus       229 Dv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~VT~~hN~f~~n~~~R~Pr~R~G~~Hv~NN~y~~~~~--yai  305 (403)
                      ||++++++||||||+|++|+|.+|+|.+|+. .+|...+||+||||| +|+.||+||+|||.+||+||||.....  ||+
T Consensus       180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~  258 (345)
T COG3866         180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI  258 (345)
T ss_pred             EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence            9999999999999999999999999999985 456789999999999 799999999999999999999996554  555


Q ss_pred             ecCCCceEEEEccEEeCCCcccccceeeccCCCcccccCceEeecCceEEeceEEecCCCCCC----CC--CCCCCcccc
Q 015623          306 GGSAAPTINSQGNRFFAPNERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYFRQSGAGAS----ST--YARASSLNA  379 (403)
Q Consensus       306 gg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~w~s~Gd~~~nGa~f~~sG~~~~----~~--~~~~~~~~~  379 (403)
                      +-...++|++|+|||+....+..-.-+++.        +..|.-     -+|++|..++....    ..  ++..|+|++
T Consensus       259 ~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv  325 (345)
T COG3866         259 TIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV  325 (345)
T ss_pred             eeccceEEEEecceeccCCCCceeeecCCc--------cceEEe-----ccCceecccCCcccccCCccCCCCCCccccc
Confidence            544449999999999997655221112111        122321     23566666654432    22  445799999


Q ss_pred             CCCCCcccc-cccccCC
Q 015623          380 RPSTLVGPM-TMRAGAL  395 (403)
Q Consensus       380 ~~~s~v~~l-t~~AG~~  395 (403)
                      +|++.|++. |++||+-
T Consensus       326 d~~~dVks~Vt~yAGaG  342 (345)
T COG3866         326 DPPEDVKSFVTNYAGAG  342 (345)
T ss_pred             CChHHhhhhhhccccce
Confidence            999999977 8999964

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 5e-91
3zsc_A340 Catalytic Function And Substrate Recognition Of The 6e-19
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 3e-14
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 1e-13
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 2e-13
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 2e-13
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 8e-13
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 9e-13
3krg_A399 Structural Insights Into Substrate Specificity And 1e-12
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 9e-12
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 4e-08
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 6e-08
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 2e-07
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 2e-07
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 7e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  331 bits (848), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 167/319 (52%), Positives = 214/319 (67%), Gaps = 16/319 (5%)
Query: 55  NPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRH 114
           NPID CWR D NW+ NR +LADCA+GFG   +GG+ G  Y VT S DDNP NP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 115 AVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADG-PCITIHFATNIIIHG 173
              +++ LWIIF+++M IKL   L +  HKTIDGRGA VH+ +G PC+ +   +++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 174 IHIHDCKKAGNGNIRDS------PEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGL 227
           +HIH C  +  G++  S      P H     A DGD +++ +  + WIDH SLS+C DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 228 IDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQ 287
           ID   GST ITISNN+F +H KVMLLGH D+Y  DK+M+ T+AFN FG    QRMPR R 
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 288 GYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHE--DAPESEWRNW 345
           G  HV NN+Y  W +YAIGGS+ PTI S+GN F AP+E ++KEVTK    ++P S   NW
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESP-SACANW 294
Query: 346 NWRSEGDLMLNGAYFRQSG 364
            WRS  D  +NGAYF  SG
Sbjct: 295 VWRSTRDAFINGAYFVSSG 313
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-138
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 5e-94
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 9e-86
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 2e-80
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 6e-80
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 2e-72
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 2e-68
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 5e-68
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 1e-67
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 5e-63
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 2e-57
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-06
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-06
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 6e-06
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 8e-06
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 2e-05
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 3e-05
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 6e-05
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  397 bits (1021), Expect = e-138
 Identities = 167/345 (48%), Positives = 216/345 (62%), Gaps = 5/345 (1%)

Query: 55  NPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRH 114
           NPID CWR D NW+ NR +LADCA+GFG   +GG+ G  Y VT + DDNP NP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 115 AVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIA-DGPCITIHFATNIIIHG 173
              +++ LWIIF+++M IKL   L +  HKTIDGRGA VH+   GPC+ +   +++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 174 IHIHDCKKAGNGNIRDSP-EHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIH 232
           +HIH C  +  G++  S         A DGD +++ +  + WIDH SLS+C DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 233 GSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHV 292
           GST ITISNN+F +H KVMLLGH D+Y  DK+M+ T+AFN FG    QRMPR R G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 293 VNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDA-PESEWRNWNWRSEG 351
            NN+Y  W +YAIGGS+ PTI S+GN F AP+E ++KEVTK       S   NW WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 352 DLMLNGAYFRQSGAGAS-STYARASSLNARPSTLVGPMTMRAGAL 395
           D  +NGAYF  SG     + Y    +           +T  AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.41
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.35
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.14
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.09
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.01
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.94
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.93
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.92
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.9
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.88
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.87
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.85
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.83
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.82
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.81
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.75
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.72
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.72
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.68
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.62
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.53
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.43
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.39
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.37
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.34
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.27
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.22
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.2
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.19
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.16
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.13
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.13
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.05
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.02
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.96
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.95
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.95
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.77
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.75
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.73
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.55
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.53
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.5
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.5
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.39
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.16
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.96
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.93
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.91
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.54
2inu_A410 Insulin fructotransferase; right-handed parallel b 94.26
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.05
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 92.21
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 90.4
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=2.4e-103  Score=787.14  Aligned_cols=342  Identities=48%  Similarity=0.892  Sum_probs=326.0

Q ss_pred             CCcccceeccCCCccccccccccCccccccCCcCCCCCeEEEEcCCCCCCCCCCCchhHHHhhhcCCCeEEEEeeceEEE
Q 015623           54 GNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIK  133 (403)
Q Consensus        54 ~n~id~cwr~~~~w~~~~~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~  133 (403)
                      +||||+||||+|+|+.+||+|||||+|||++||||+||++|+||+++| ++++|+|||||+||++++||||||+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999977 6899999999999999999999999999999


Q ss_pred             eCceeeecCCcEEEeeCCeEEEeC-CCeEEEeccccEEEEeEEEeeeecCCCCcc-cCCCCCCCCCCCCCCCcEEeeCCc
Q 015623          134 LNQELVMNSHKTIDGRGASVHIAD-GPCITIHFATNIIIHGIHIHDCKKAGNGNI-RDSPEHSGWWDASDGDGVSIFSSQ  211 (403)
Q Consensus       134 l~~~L~i~snkTI~G~ga~i~I~~-G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i-~~~~~~~g~~~~~~~DaIsi~gs~  211 (403)
                      |+++|+|.|||||+|||++++|.+ |.||+|++++|||||||+|+++.|.++++| |++++|+|.+...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999997 579999999999999999999998887777 899989988877899999999999


Q ss_pred             cEEEEeeeecCCCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCCcCCCcccCCCeEE
Q 015623          212 HIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFH  291 (403)
Q Consensus       212 nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~R~G~~H  291 (403)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+...|+.++||||||+|+.++.+|+||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998888888999999999966899999999999999


Q ss_pred             EEcceeeCCcceeeecCCCceEEEEccEEeCCCcccccceeeccCCC-cccccCceEeecCceEEeceEEecCCCCCCC-
Q 015623          292 VVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDAP-ESEWRNWNWRSEGDLMLNGAYFRQSGAGASS-  369 (403)
Q Consensus       292 v~NN~y~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~-~~~~~~~~w~s~Gd~~~nGa~f~~sG~~~~~-  369 (403)
                      ++||||++|.+|++++++++++++|+|||++++++..|++++|++++ +.+|++|+|+++||+|+||++|++||.+... 
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999889999998876 6789999999999999999999999987654 


Q ss_pred             CCCCCCccccCCCCCcccccccccCCC
Q 015623          370 TYARASSLNARPSTLVGPMTMRAGALN  396 (403)
Q Consensus       370 ~~~~~~~~~~~~~s~v~~lt~~AG~~~  396 (403)
                      +|+++|+|+++|+++|++||++||||.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            499999999999999999999999984
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-144
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-83
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-65
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 1e-62
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-58
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-43
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-08
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-05
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 0.002
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  412 bits (1061), Expect = e-144
 Identities = 167/345 (48%), Positives = 216/345 (62%), Gaps = 5/345 (1%)

Query: 55  NPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRH 114
           NPID CWR D NW+ NR +LADCA+GFG   +GG+ G  Y VT + DDNP NP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 115 AVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIA-DGPCITIHFATNIIIHG 173
              +++ LWIIF+++M IKL   L +  HKTIDGRGA VH+   GPC+ +   +++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 174 IHIHDCKKAGNGNIRDSP-EHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIH 232
           +HIH C  +  G++  S         A DGD +++ +  + WIDH SLS+C DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 233 GSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHV 292
           GST ITISNN+F +H KVMLLGH D+Y  DK+M+ T+AFN FG    QRMPR R G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 293 VNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDA-PESEWRNWNWRSEG 351
            NN+Y  W +YAIGGS+ PTI S+GN F AP+E ++KEVTK       S   NW WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 352 DLMLNGAYFRQSGAGAS-STYARASSLNARPSTLVGPMTMRAGAL 395
           D  +NGAYF  SG     + Y    +           +T  AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.29
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.19
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.91
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.75
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.72
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.52
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.5
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.23
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.21
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.2
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.19
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.17
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.93
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.86
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.8
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.61
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.53
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.49
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.33
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.28
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.76
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 95.38
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.24
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.11
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.07
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.75
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 93.51
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 91.63
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=4.9e-97  Score=739.13  Aligned_cols=342  Identities=49%  Similarity=0.893  Sum_probs=311.9

Q ss_pred             CCcccceeccCCCccccccccccCccccccCCcCCCCCeEEEEcCCCCCCCCCCCchhHHHhhhcCCCeEEEEeeceEEE
Q 015623           54 GNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIK  133 (403)
Q Consensus        54 ~n~id~cwr~~~~w~~~~~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~  133 (403)
                      .||||+||||+|||+++||+||+||||||++||||+||+||+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999987 5889999999999999999999999999999


Q ss_pred             eCceeeecCCcEEEeeCCeEEEeC-CCeEEEeccccEEEEeEEEeeeecCCCCcccCCCC-CCCCCCCCCCCcEEeeCCc
Q 015623          134 LNQELVMNSHKTIDGRGASVHIAD-GPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPE-HSGWWDASDGDGVSIFSSQ  211 (403)
Q Consensus       134 l~~~L~i~snkTI~G~ga~i~I~~-G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~-~~g~~~~~~~DaIsi~gs~  211 (403)
                      |+++|.|+|||||+|||++++|.+ |.+|+++.++|||||||+||++.+..++.++.++. +.+.....++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999885 45699999999999999999987765554332221 1222334789999999999


Q ss_pred             cEEEEeeeecCCCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCCcCCCcccCCCeEE
Q 015623          212 HIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFH  291 (403)
Q Consensus       212 nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~R~G~~H  291 (403)
                      |||||||+|+|+.||+||+++++++||||||+|++|+|++|+|+++....+..++||||||+|.++..+|+|++|+|.+|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999998777788999999999988889999999999999


Q ss_pred             EEcceeeCCcceeeecCCCceEEEEccEEeCCCcccccceeeccCC-CcccccCceEeecCceEEeceEEecCCCCCC-C
Q 015623          292 VVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHEDA-PESEWRNWNWRSEGDLMLNGAYFRQSGAGAS-S  369 (403)
Q Consensus       292 v~NN~y~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~-~~~~~~~~~w~s~Gd~~~nGa~f~~sG~~~~-~  369 (403)
                      ++||||++|..|++++++++++++|+|||++++.+..|+++++... ...++++|.|++++|+|+||++|.++|.... .
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            9999999999999999999999999999999999988999988765 3345889999999999999999999987654 4


Q ss_pred             CCCCCCccccCCCCCcccccccccCCC
Q 015623          370 TYARASSLNARPSTLVGPMTMRAGALN  396 (403)
Q Consensus       370 ~~~~~~~~~~~~~s~v~~lt~~AG~~~  396 (403)
                      .|+++|+|+++|++.|++|+++||||+
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            588999999999999999999999995
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure