Citrus Sinensis ID: 015636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MSRFSWLRLSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVLSLLLLLFYSLIYSHKHSVTSHFN
Secondary Structure (PSIPRED)
cccccEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccEEEccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHccccEEEEEccccccccccccccccccccccccccccccEEEEccccccccccccccEEcccccccccccEEEEEEEEEEEEcccccccccEEEEcccccccccccccccEEEEEEEccccccEEccccEEEEEEccHHHHcccccEEEEccccEEEEEEccccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEHHHHcHHHHHccccccccccccHHHHHHHcccHHHHHHccccccccEEccccHHcccccccccccccccHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccEEEEEEEHHHHHcccEEEEEEccccccccccccccccccccccccccccccEEEEEEEEEcccccccccEEEcccccccccccEEEEEEEEEEEEccccccccEEEEcccccccccccccccEEEEEEEEccccEEEccccEEEEEEEEHHHHHccccEEEcccccEEEEEEccccccccEccccccccccccccccc
Coil and Loop (DISEMBL)
msrfswlrLSRRQLLSstavespinkshclqkaatlpqsilhkrglyycssvtgtladfgttGMFLARRCIhatgscysskrdpyellgvpenasQDEIKKAFHMLAKqyhpdanknnpsaKRKFQEIRDAYETLRDSEKraqydrrrsrgsenekysagdaegfryagdaeGFRYAYQTHFSDSFHKIFSEIFedetshfapdIQVELVLSFAEAAKgctkhvsfdafvpcdschgrgfpadaktkicstcrgigrvtippftstcstckglgriikdhcmtckgsgvvdgvkevkvtipagvdsgdtirvpeagnaggrgrqhgNLFIKlkvaddpifsrdgadvyvdsniSFTQAilggkvdvptlsgkVQVKVIVLSLLLLLFYSLIYshkhsvtshfn
Flexible Loop (DISEMBL)
msrfswlrlsrRQLLsstavespinkshclqKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQyhpdanknnpsakrKFQEIRDAYetlrdsekraqydrrrsrgsenekysagdaegFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCrgigrvtippftstcSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTipagvdsgdtirvpeagnaggrgrqhgNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVLSLLLLLFYSLIyshkhsvtshfn
Low Complexity Region (SEG)
MsrfswlrlsrrqllssTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKvivlslllllfysliySHKHSVTSHFN
Disordered region (IsUnstruct)
*************************KSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLG**************************************************************************GFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRV*********GRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVLSLLLLLFYSLIYSHK********
Disordered Region (DISOPRED)
*SRFSWLRLSRRQ*******************AATLPQSILHKRGLYYCSSVT***********FL***CIHA*GSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSA**AEGFRYAGDAEGFRYAYQTHFSDS**********************ELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR**********GRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVLSLLLLLFYSLI************
Disordered Region (DISEMBL)
********LSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE******************SAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVLSLLLLLFYSLIYSHK********
Disordered Region (DISPRO)
*****W******QLLS*TAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGR*****AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVLS*****F*S**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRFSWLRLSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVLSLLLLLFYSLIYSHKHSVTSHFN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q38813	408	Chaperone protein dnaJ 1,	yes	no	0.746	0.737	0.605	1e-107
Q8K9Y9	378	Chaperone protein DnaJ OS	yes	no	0.712	0.759	0.377	2e-55
P0A1G7	379	Chaperone protein DnaJ OS	yes	no	0.712	0.757	0.392	1e-54
P0A1G8	379	Chaperone protein DnaJ OS	N/A	no	0.712	0.757	0.392	1e-54
B4TVZ6	379	Chaperone protein DnaJ OS	yes	no	0.712	0.757	0.392	1e-54
C0Q4F4	379	Chaperone protein DnaJ OS	yes	no	0.712	0.757	0.392	1e-54
A9MXI3	379	Chaperone protein DnaJ OS	yes	no	0.712	0.757	0.392	1e-54
B4T6D7	379	Chaperone protein DnaJ OS	yes	no	0.712	0.757	0.392	1e-54
B4TIB5	379	Chaperone protein DnaJ OS	yes	no	0.712	0.757	0.392	1e-54
B5RF09	379	Chaperone protein DnaJ OS	yes	no	0.712	0.757	0.392	1e-54

>sp|Q38813|DNAJ1_ARATH Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana GN=ATJ1 PE=2 SV=2

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/312 (60%), Positives = 240/312 (76%), Gaps = 11/312 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct: 91  QEIREAYETLGNSERREEYDKLQYRNSD---YVNNDG------GDSERFRRAYQSNFSDT 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct: 142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct: 200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKV 377
           VPTLSGK+Q+ +
Sbjct: 320 VPTLSGKIQLDI 331

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8K9Y9|DNAJ_BUCAP Chaperone protein DnaJ OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=dnaJ PE=3 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 176/305 (57%), Gaps = 18/305 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D Y++LG+P++A + EIKKA+  LA +YHPD N+ + +A+ KF+EI++AYE L + E
Sbjct: 2   AKKDYYQILGIPKSAEEREIKKAYKRLAMKYHPDRNQGDKNAENKFKEIKEAYEILINEE 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF---ED 196
           KR  YD+      EN     G  +   Y+       +   T F D F  +F +IF    +
Sbjct: 62  KRTAYDQYGHAAFEN-----GYNQNNTYS------TFTSSTDFGDIFGDVFGDIFGGSRN 110

Query: 197 ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIG 256
           +      D+   + +S  EA KG TK +    F  C +C+G G     K   CSTC G G
Sbjct: 111 QRVKKGADLCYNMEISLEEAVKGTTKEIRIPTFQKCKTCYGMGTSTGTKPNGCSTCHGKG 170

Query: 257 RVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRV 312
           ++ I    FT   +C TC G+G +IK+ C  C+G G +   K + V IP G+D+ D IR+
Sbjct: 171 QIHIRKGFFTVQQSCPTCNGIGTVIKNPCRMCRGQGRIKTNKTLSVKIPPGIDTNDKIRL 230

Query: 313 PEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK 372
            + G AG  G Q G+L++++KV   PIF R+  ++Y +  I+FT A LGG+++VPTL G+
Sbjct: 231 SKEGEAGTNGAQPGDLYVQMKVNKHPIFEREENNLYCEVPINFTMAALGGEIEVPTLDGR 290

Query: 373 VQVKV 377
           V +K+
Sbjct: 291 VNLKI 295

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

>sp|P0A1G7|DNAJ_SALTY Chaperone protein DnaJ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaJ PE=3 SV=2

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 19/306 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKV 377
           +V +KV
Sbjct: 291 RVMLKV 296

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity). Necessary for invasion of epithelial cells, secretion of invasion proteins and proliferation within macrophages.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P0A1G8|DNAJ_SALTI Chaperone protein DnaJ OS=Salmonella typhi GN=dnaJ PE=3 SV=2

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 19/306 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKV 377
           +V +KV
Sbjct: 291 RVMLKV 296

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella typhi (taxid: 90370)

>sp|B4TVZ6|DNAJ_SALSV Chaperone protein DnaJ OS=Salmonella schwarzengrund (strain CVM19633) GN=dnaJ PE=3 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 19/306 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKV 377
           +V +KV
Sbjct: 291 RVMLKV 296

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella schwarzengrund (strain CVM19633) (taxid: 439843)

>sp|C0Q4F4|DNAJ_SALPC Chaperone protein DnaJ OS=Salmonella paratyphi C (strain RKS4594) GN=dnaJ PE=3 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 19/306 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKV 377
           +V +KV
Sbjct: 291 RVMLKV 296

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella paratyphi C (strain RKS4594) (taxid: 476213)

>sp|A9MXI3|DNAJ_SALPB Chaperone protein DnaJ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaJ PE=3 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 19/306 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKV 377
           +V +KV
Sbjct: 291 RVMLKV 296

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) (taxid: 1016998)

>sp|B4T6D7|DNAJ_SALNS Chaperone protein DnaJ OS=Salmonella newport (strain SL254) GN=dnaJ PE=3 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 19/306 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKV 377
           +V +KV
Sbjct: 291 RVMLKV 296

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella newport (strain SL254) (taxid: 423368)

>sp|B4TIB5|DNAJ_SALHS Chaperone protein DnaJ OS=Salmonella heidelberg (strain SL476) GN=dnaJ PE=3 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 19/306 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKV 377
           +V +KV
Sbjct: 291 RVMLKV 296

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella heidelberg (strain SL476) (taxid: 454169)

>sp|B5RF09|DNAJ_SALG2 Chaperone protein DnaJ OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=dnaJ PE=3 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 19/306 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKV 377
           +V +KV
Sbjct: 291 RVMLKV 296

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella gallinarum (strain 287/91 / NCTC 13346) (taxid: 550538)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
255545870	494	chaperone protein DNAj, putative [Ricinu	0.933	0.761	0.678	1e-140
302142020	470	unnamed protein product [Vitis vinifera]	0.888	0.761	0.652	1e-138
225459166	462	PREDICTED: chaperone protein dnaJ 1, mit	0.863	0.753	0.668	1e-137
449515496	444	PREDICTED: chaperone protein dnaJ 1, mit	0.910	0.826	0.641	1e-133
449470084	460	PREDICTED: chaperone protein dnaJ 1, mit	0.930	0.815	0.631	1e-130
356498819	445	PREDICTED: chaperone protein dnaJ 1, mit	0.910	0.824	0.642	1e-129
30690263	408	chaperone protein dnaJ 1 [Arabidopsis th	0.746	0.737	0.605	1e-105
26451496	408	putative AtJ1 [Arabidopsis thaliana]	0.746	0.737	0.605	1e-105
15217871	427	chaperone protein dnaJ 1 [Arabidopsis th	0.746	0.704	0.605	1e-105
297845768	427	hypothetical protein ARALYDRAFT_473029 [	0.746	0.704	0.605	1e-104

>gi|255545870|ref|XP_002513995.1| chaperone protein DNAj, putative [Ricinus communis] gi|223547081|gb|EEF48578.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/392 (67%), Positives = 309/392 (78%), Gaps = 16/392 (4%)

Query: 1   MSRFSWLRL--SRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLAD 58
           M R+ WL     RR LLSS AVES +N+ H  +K +TL Q +   R  + CS V    + 
Sbjct: 1   MGRYGWLATLCRRRHLLSSAAVESTVNRGHWHRKISTLRQHLCRDRCFHSCSFVIAKRSG 60

Query: 59  -FGTTGM-FLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANK 116
             GT  M  L  R IHATG+C + +   YE+LGV ENASQDEIKKAFH+LAK+YHPDANK
Sbjct: 61  CLGTAEMQSLKCRYIHATGTCNAKEPSYYEILGVSENASQDEIKKAFHLLAKKYHPDANK 120

Query: 117 NNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG----------DAEGFR 166
           NNPSAKR FQEIR+AYETL+DSEKRAQYD R +R SE  +Y A           DA  FR
Sbjct: 121 NNPSAKRNFQEIREAYETLKDSEKRAQYDTRHARSSEKVEYGANFADWFGHGAEDAARFR 180

Query: 167 Y-AGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVS 225
           Y AG+ +GF Y+YQT+FSDSFHKIFSEIFED  +  A DIQVELVLSF EAA+GCTKH+S
Sbjct: 181 YGAGNGKGFSYSYQTNFSDSFHKIFSEIFED-ANQSASDIQVELVLSFTEAARGCTKHLS 239

Query: 226 FDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCK 285
           FDAFVPCDSC GRGFP DAKT++C  CRGIG++TIPPFTSTCS+CKG GRII+++CM+C+
Sbjct: 240 FDAFVPCDSCDGRGFPIDAKTRVCPACRGIGKITIPPFTSTCSSCKGSGRIIEEYCMSCR 299

Query: 286 GSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGA 345
           GSGVV+GVKEVKVT+PAG+DSGDTIRVPEAGNAGGRG Q GNLFI LKV DDP+F+RDG 
Sbjct: 300 GSGVVEGVKEVKVTVPAGIDSGDTIRVPEAGNAGGRGHQPGNLFISLKVEDDPVFTRDGV 359

Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGKVQVKV 377
           DVYVD+NISFTQAILGGKVDVPTLSGK Q+K+
Sbjct: 360 DVYVDANISFTQAILGGKVDVPTLSGKFQIKI 391

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142020|emb|CBI19223.3| unnamed protein product [Vitis vinifera]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/388 (65%), Positives = 305/388 (78%), Gaps = 30/388 (7%)

Query: 1   MSRFSWLRLSRRQLLSSTAVE-SPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADF 59
           M RF WL L +R L S++A++  PI   HC   A      ++H+R L+  + + G  +DF
Sbjct: 1   MGRFGWLGLCKRHLQSTSAIDFLPIE--HCRVPA------LIHQRILHGYNVLHGKPSDF 52

Query: 60  GTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP 119
            T G+  A R IHATG CYS++R+ YE+LGVP+NAS+DEIKKAFH+LAK++HPDANKNNP
Sbjct: 53  ATMGIPSATRYIHATGICYSTERNYYEILGVPQNASRDEIKKAFHVLAKKFHPDANKNNP 112

Query: 120 SAKRKFQEIRDAYETLRDSEKRAQYDR--RRSRGSENEKYSAGDAEGFRYAGDAEGFRYA 177
            AKRKFQEIRDAYETL+DSEKRAQYDR    S  SE+ K +AGD           GFRYA
Sbjct: 113 YAKRKFQEIRDAYETLQDSEKRAQYDRVPTLSHFSESVKDAAGD-----------GFRYA 161

Query: 178 YQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHG 237
           Y++HFSDSF KIF+EIFE ET +FA DIQVEL LSF+EAAKGCTKH+SFDA++PCDSC+G
Sbjct: 162 YRSHFSDSFRKIFAEIFEHETENFATDIQVELSLSFSEAAKGCTKHLSFDAYIPCDSCYG 221

Query: 238 RGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVK 297
           RG P DAKTK+C  C+GIGRVTIPPFTSTCS+CKGLGRI+K+HC TC+GSGVV+GVK+V+
Sbjct: 222 RGHPVDAKTKVCPICKGIGRVTIPPFTSTCSSCKGLGRIVKEHCTTCRGSGVVEGVKDVE 281

Query: 298 VTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLK--------VADDPIFSRDGADVYV 349
           V IPAGVDSGDTI VP+ GNAGGRG + GNL+IKLK        VA D  F RDGADVYV
Sbjct: 282 VVIPAGVDSGDTIHVPKVGNAGGRGVEPGNLYIKLKAQLYLFHSVAKDRTFVRDGADVYV 341

Query: 350 DSNISFTQAILGGKVDVPTLSGKVQVKV 377
           +S+ISFTQAILGG V+VPTLSGK+Q+K+
Sbjct: 342 ESSISFTQAILGGTVEVPTLSGKMQLKI 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459166|ref|XP_002283963.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Vitis vinifera]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/368 (66%), Positives = 299/368 (81%), Gaps = 20/368 (5%)

Query: 11  RRQLLSSTAVE-SPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARR 69
           +R L S++A++  PI   HC   A      ++H+R L+  + + G  +DF T G+  A R
Sbjct: 13  KRHLQSTSAIDFLPIE--HCRVPA------LIHQRILHGYNVLHGKPSDFATMGIPSATR 64

Query: 70  CIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIR 129
            IHATG CYS++R+ YE+LGVP+NAS+DEIKKAFH+LAK++HPDANKNNP AKRKFQEIR
Sbjct: 65  YIHATGICYSTERNYYEILGVPQNASRDEIKKAFHVLAKKFHPDANKNNPYAKRKFQEIR 124

Query: 130 DAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKI 189
           DAYETL+DSEKRAQYDR  +  SE+ K +AGD           GFRYAY++HFSDSF KI
Sbjct: 125 DAYETLQDSEKRAQYDRECTMSSESVKDAAGD-----------GFRYAYRSHFSDSFRKI 173

Query: 190 FSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKIC 249
           F+EIFE ET +FA DIQVEL LSF+EAAKGCTKH+SFDA++PCDSC+GRG P DAKTK+C
Sbjct: 174 FAEIFEHETENFATDIQVELSLSFSEAAKGCTKHLSFDAYIPCDSCYGRGHPVDAKTKVC 233

Query: 250 STCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
             C+GIGRVTIPPFTSTCS+CKGLGRI+K+HC TC+GSGVV+GVK+V+V IPAGVDSGDT
Sbjct: 234 PICKGIGRVTIPPFTSTCSSCKGLGRIVKEHCTTCRGSGVVEGVKDVEVVIPAGVDSGDT 293

Query: 310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
           I VP+ GNAGGRG + GNL+IKLKVA D  F RDGADVYV+S+ISFTQAILGG V+VPTL
Sbjct: 294 IHVPKVGNAGGRGVEPGNLYIKLKVAKDRTFVRDGADVYVESSISFTQAILGGTVEVPTL 353

Query: 370 SGKVQVKV 377
           SGK+Q+K+
Sbjct: 354 SGKMQLKI 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515496|ref|XP_004164785.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Cucumis sativus]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/377 (64%), Positives = 284/377 (75%), Gaps = 10/377 (2%)

Query: 1   MSRFSWLRLSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFG 60
           M R  WL L RRQLLSS  V   I+    L K ++L Q     R L    S  G   DF 
Sbjct: 1   MKRLGWLGLCRRQLLSSEGVGPSIDLPLSLGKVSSLRQFFTCARALQAFPSAVGNGPDFA 60

Query: 61  TTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS 120
           T     +R  IH+TGSC S +RD YE+LGV  NAS++EIKKA+H LAK+YHPDANKNNPS
Sbjct: 61  TA-FPGSRHFIHSTGSCCSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPS 119

Query: 121 AKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQT 180
           AKRKFQEIR+AYETL+DSEKR+QYD+R    SEN  + AGDAEGF Y          Y+T
Sbjct: 120 AKRKFQEIREAYETLQDSEKRSQYDQRHGGESENVGFGAGDAEGFSYT---------YRT 170

Query: 181 HFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGF 240
           HFSDSF KIFSEIFE ET     DIQV+L+LSFAEAAKGCTK +SFDA VPCDSC+GRG+
Sbjct: 171 HFSDSFQKIFSEIFEHETGRLPSDIQVDLLLSFAEAAKGCTKDLSFDALVPCDSCYGRGY 230

Query: 241 PADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTI 300
           P +A  + C TCRG+GRVTIPPFTSTC+TC+G G+II++ C  C+G GVV+GV +V VTI
Sbjct: 231 PVNASKRSCPTCRGLGRVTIPPFTSTCTTCRGSGQIIEESCGQCRGMGVVEGVMKVTVTI 290

Query: 301 PAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAIL 360
           PAGVDSGDTIRVPEAGN+GGR    GNL IKLKVA+D +F RDG D+YVDSNISFTQAIL
Sbjct: 291 PAGVDSGDTIRVPEAGNSGGRDTHPGNLIIKLKVAEDHVFKRDGVDIYVDSNISFTQAIL 350

Query: 361 GGKVDVPTLSGKVQVKV 377
           GGKV+VPTLSG++Q++V
Sbjct: 351 GGKVEVPTLSGRMQIEV 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470084|ref|XP_004152748.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Cucumis sativus]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/385 (63%), Positives = 287/385 (74%), Gaps = 10/385 (2%)

Query: 1   MSRFSWLRLSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFG 60
           M R  WL L RRQLLSS  V   I+    L K  +L Q     R L    S  G   DF 
Sbjct: 1   MKRLGWLGLCRRQLLSSEGVGPSIDLRLSLGKVPSLRQFFTCARALQAFPSAVGNGPDFA 60

Query: 61  TTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS 120
           T     +R  IH+TGSC S +RD YE+LGV  NAS++EIKKA+H LAK+YHPDANKNNPS
Sbjct: 61  TA-FPGSRHFIHSTGSCCSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPS 119

Query: 121 AKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYS-------AGDAEGFRY-AGDAE 172
           AKRKFQEIR+AYETL+DSEKR+QYD+  +     EKY         G++E   + AGDAE
Sbjct: 120 AKRKFQEIREAYETLQDSEKRSQYDQV-AFPKLLEKYPIGFCCLHGGESENVGFGAGDAE 178

Query: 173 GFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPC 232
           GF Y Y+THFSDSF KIFSEIFE ET     DIQV+L+LSFAEAAKGCTK +SFDA VPC
Sbjct: 179 GFSYTYRTHFSDSFQKIFSEIFEHETGRLPSDIQVDLLLSFAEAAKGCTKDLSFDALVPC 238

Query: 233 DSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDG 292
           DSC+GRG+P +A  + C TCRG+GRVTIPPFTSTC+TC+G G+II++ C  C+G GVV+G
Sbjct: 239 DSCYGRGYPVNASKRSCPTCRGLGRVTIPPFTSTCTTCRGSGQIIEESCGQCRGMGVVEG 298

Query: 293 VKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSN 352
           V +V VTIPAGVDSGDTIRVPEAGN+GGR    GNL IKLKVA+D +F RDG D+YVDSN
Sbjct: 299 VMKVTVTIPAGVDSGDTIRVPEAGNSGGRDTHPGNLIIKLKVAEDHVFKRDGVDIYVDSN 358

Query: 353 ISFTQAILGGKVDVPTLSGKVQVKV 377
           ISFTQAILGGKV+VPTLSG++Q++V
Sbjct: 359 ISFTQAILGGKVEVPTLSGRMQIEV 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498819|ref|XP_003518246.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Glycine max]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/378 (64%), Positives = 287/378 (75%), Gaps = 11/378 (2%)

Query: 1   MSRFSWLRLSRRQLLSSTAVESPINKSH-CLQKAATLPQSILHKRGLYYCSSVTGTLADF 59
           M RF+W    RR LLSS   ES ++K      K ++  QS L  R L  C  VT T  + 
Sbjct: 1   MRRFAWFTPYRRHLLSSLTSESLVDKGESTFTKFSSSRQSFLLARALVNCGFVTKT-EES 59

Query: 60  GTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP 119
               + L  R  HAT    S+ RD Y  LGVPENASQDEIKKAFH LAK+YHPDANKNNP
Sbjct: 60  RIPRVPLRYRYFHATAFSSSADRDHYGTLGVPENASQDEIKKAFHSLAKKYHPDANKNNP 119

Query: 120 SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQ 179
           SAKRKFQ+IR+AYETLRDS+KRA+YD+ R+RGSE+ +Y   DAE FR A         Y+
Sbjct: 120 SAKRKFQDIREAYETLRDSKKRAEYDKMRTRGSEDIEYDRDDAERFRNA---------YR 170

Query: 180 THFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRG 239
           +HFSDSFHK+F EIFE+ T+ F+ +I+VEL L+F+EAA+GCTKHVSFDA VPCD C+G+G
Sbjct: 171 SHFSDSFHKVFYEIFEEATTQFSSNIEVELSLTFSEAARGCTKHVSFDALVPCDHCNGQG 230

Query: 240 FPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVT 299
           +P DA  K+C TCRG GRVTIPPFTSTC TCKG GRIIKD C+TC GSG V+GVKEVKVT
Sbjct: 231 YPLDAIPKVCPTCRGSGRVTIPPFTSTCITCKGSGRIIKDSCLTCGGSGAVEGVKEVKVT 290

Query: 300 IPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAI 359
           IPAGVDSGDTI VPE GNA G G + G+L+IK+KV +D IF RDGAD+YVDSNISFTQAI
Sbjct: 291 IPAGVDSGDTIHVPEGGNAAGSGGRPGSLYIKIKVTEDSIFVRDGADIYVDSNISFTQAI 350

Query: 360 LGGKVDVPTLSGKVQVKV 377
           LGGKV+VPTLSGK+Q+K+
Sbjct: 351 LGGKVEVPTLSGKMQLKI 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690263|ref|NP_849719.1| chaperone protein dnaJ 1 [Arabidopsis thaliana] gi|66774115|sp|Q38813.2|DNAJ1_ARATH RecName: Full=Chaperone protein dnaJ 1, mitochondrial; Short=AtDjB1; Short=AtJ1; Flags: Precursor gi|332192810|gb|AEE30931.1| chaperone protein dnaJ 1 [Arabidopsis thaliana]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/312 (60%), Positives = 240/312 (76%), Gaps = 11/312 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct: 91  QEIREAYETLGNSERREEYDKLQYRNSD---YVNNDG------GDSERFRRAYQSNFSDT 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct: 142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct: 200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKV 377
           VPTLSGK+Q+ +
Sbjct: 320 VPTLSGKIQLDI 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451496|dbj|BAC42846.1| putative AtJ1 [Arabidopsis thaliana]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/312 (60%), Positives = 240/312 (76%), Gaps = 11/312 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct: 91  QEIREAYETLGNSERREEYDKLQYRNSD---YVNSDG------GDSERFRRAYQSNFSDT 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct: 142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct: 200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKV 377
           VPTLSGK+Q+ +
Sbjct: 320 VPTLSGKIQLDI 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217871|ref|NP_174142.1| chaperone protein dnaJ 1 [Arabidopsis thaliana] gi|9795616|gb|AAF98434.1|AC021044_13 Putative dnaJ protein [Arabidopsis thaliana] gi|332192811|gb|AEE30932.1| chaperone protein dnaJ 1 [Arabidopsis thaliana]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/312 (60%), Positives = 240/312 (76%), Gaps = 11/312 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct: 91  QEIREAYETLGNSERREEYDKLQYRNSD---YVNNDG------GDSERFRRAYQSNFSDT 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct: 142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct: 200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKV 377
           VPTLSGK+Q+ +
Sbjct: 320 VPTLSGKIQLDI 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845768|ref|XP_002890765.1| hypothetical protein ARALYDRAFT_473029 [Arabidopsis lyrata subsp. lyrata] gi|297336607|gb|EFH67024.1| hypothetical protein ARALYDRAFT_473029 [Arabidopsis lyrata subsp. lyrata]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/312 (60%), Positives = 237/312 (75%), Gaps = 11/312 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGIYSSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ R    +N  Y   D       GD E FR AYQ++FSDS
Sbjct: 91  QEIREAYETLGNSERREEYDKLRY---QNSDYVNNDG------GDGERFRRAYQSNFSDS 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +    DI+VEL LSF+EAA+GCTK +SFDA+V CDSC G G P DA 
Sbjct: 142 FHKIFSEIFEN--NQIKSDIRVELSLSFSEAAEGCTKRLSFDAYVFCDSCDGLGHPRDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             +C TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+  K V++ IP GV+
Sbjct: 200 MSVCPTCRGLGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEATKTVELAIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIGGAGNVRSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKV 377
           VPTLSGK+Q+ +
Sbjct: 320 VPTLSGKIQLDI 331

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2032175	427	ATJ1 [Arabidopsis thaliana (ta	0.741	0.700	0.609	2.8e-98
TAIR|locus:2162692	456	GFA2 "gametophytic factor 2" [	0.754	0.666	0.423	1.9e-60
TIGR_CMR|GSU_0034	373	GSU_0034 "chaperone protein dn	0.712	0.769	0.405	1.1e-53
UNIPROTKB|O34242	381	dnaJ "Chaperone protein DnaJ"	0.709	0.750	0.400	6.3e-53
TIGR_CMR|VC_0856	381	VC_0856 "dnaJ protein" [Vibrio	0.709	0.750	0.400	6.3e-53
DICTYBASE|DDB_G0278789	460	DDB_G0278789 "heat shock prote	0.746	0.654	0.368	1.3e-52
UNIPROTKB|P08622	376	dnaJ [Escherichia coli K-12 (t	0.702	0.752	0.386	1.7e-52
TIGR_CMR|SO_1127	378	SO_1127 "chaperone protein Dna	0.702	0.748	0.399	2.7e-52
TIGR_CMR|SPO_0044	381	SPO_0044 "chaperone protein Dn	0.714	0.755	0.393	8.3e-51
UNIPROTKB|Q47XI7	378	dnaJ "Chaperone protein DnaJ"	0.719	0.767	0.385	3.6e-50

TAIR|locus:2032175 ATJ1 [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 189/310 (60%), Positives = 239/310 (77%)

Query:    66 LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
             L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct:    31 LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query:   126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
             QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct:    91 QEIREAYETLGNSERREEYDKLQYRNSD---YVNNDG------GDSERFRRAYQSNFSDT 141

Query:   186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
             FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct:   142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query:   246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
               IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct:   200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query:   306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
             S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct:   260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query:   366 VPTLSGKVQV 375
             VPTLSGK+Q+
Sbjct:   320 VPTLSGKIQL 329

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2162692 GFA2 "gametophytic factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 135/319 (42%), Positives = 187/319 (58%)

Query:    65 FLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRK 124
             F + R  H TGS + S +D Y +LGV +NA + EIKKA++ LAK+ HPD NK++P A+ K
Sbjct:    76 FGSTRSFHGTGSSFMSAKDYYSVLGVSKNAQEGEIKKAYYGLAKKLHPDMNKDDPEAETK 135

Query:   125 FQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG--DAEGFRYAGDAEGFRYAYQTHF 182
             FQE+  AYE L+D EKR  YD+      E +  S G  + +GF   G   GF       F
Sbjct:   136 FQEVSKAYEILKDKEKRDLYDQVGHEAFE-QNASGGFPNDQGFG-GGGGGGFN-----PF 188

Query:   183 SDSFHKIFSEIFEDETSHFA-PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFP 241
              D F     +IF          D++V L LSF EA +GC+K V+F   + C++C G+G P
Sbjct:   189 -DIFGSFNGDIFNMYRQDIGGQDVKVLLDLSFMEAVQGCSKTVTFQTEMACNTCGGQGVP 247

Query:   242 ADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVK 297
                K + C  C G G  ++        +TC  C G G+     C +C+G+ VV G K VK
Sbjct:   248 PGTKREKCKACNGSGMTSLRRGMLSIQTTCQKCGGAGQTFSSICKSCRGARVVRGQKSVK 307

Query:   298 VTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQ 357
             VTI  GVD+ DT++V   G A   G Q G+L++ LKV +DP+F R+G+D++VD+ +S TQ
Sbjct:   308 VTIDPGVDNSDTLKVARVGGADPEGDQPGDLYVTLKVREDPVFRREGSDIHVDAVLSVTQ 367

Query:   358 AILGGKVDVPTLSGKVQVK 376
             AILGG + VPTL+G V VK
Sbjct:   368 AILGGTIQVPTLTGDVVVK 386

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0000740 "nuclear membrane fusion" evidence=IMP

GO:0010198 "synergid death" evidence=IMP

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IGI

GO:0000741 "karyogamy" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009558 "embryo sac cellularization" evidence=IMP

GO:0010197 "polar nucleus fusion" evidence=IMP

TIGR_CMR|GSU_0034 GSU_0034 "chaperone protein dnaJ" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 124/306 (40%), Positives = 173/306 (56%)

Query:    79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
             + KRD YE+LGV +NAS  EIKKAF  LA QYHPD N ++  A+ KF+EI +AYE L D 
Sbjct:     3 ADKRDYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDP 62

Query:   139 EKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF---- 194
             +KRAQYD+    G     +S G   GF  AG          T F D F  IF +IF    
Sbjct:    63 QKRAQYDQFGHAGVGAGGFSGGGFGGFG-AG----------TPFGDIFGDIFGDIFGGRP 111

Query:   195 EDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
                      D+Q  + LSF EAA G  K +       C  C G G     + K+C TCRG
Sbjct:   112 RGSRGRRGDDLQYNMELSFEEAAFGAEKEIQVPYGKRCGDCGGSGAKPGTEPKVCPTCRG 171

Query:   255 IGRVTIPP-FTS---TCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI 310
              G+V     F S   TC+ C G GR++++ C +C+GSG++   K + V +PAGV++G  +
Sbjct:   172 AGQVRFQQGFFSVSKTCNHCNGEGRVVENPCTSCRGSGMIRDTKTLSVKVPAGVETGTRL 231

Query:   311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLS 370
             ++   G  G +G  +G+L++ + V + PIF+R+  DV  +  +SF QA LG +++VPTL 
Sbjct:   232 KLSGEGGQGIKGGGNGDLYVAIAVREHPIFTREDNDVLCEIPVSFVQAALGCEIEVPTLD 291

Query:   371 GKVQVK 376
             GKV +K
Sbjct:   292 GKVSMK 297

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|O34242 dnaJ "Chaperone protein DnaJ" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 123/307 (40%), Positives = 168/307 (54%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD YE+LGV  +AS+ +IKKA+  LA +YHPD N  +  A  KF+E+++AYE L D++
Sbjct:     2 SKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDAQ 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
             K+A YD+      E     AG   GF   G   G        F D F  +F +IF     
Sbjct:    62 KKAAYDQYGHAAFEQ---GAG---GFGGGGFGGG-----GADFGDIFGDVFGDIFGGGRR 110

Query:   200 HFAP------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
                P      D++  + LS  EA +GC+K +     V CD+C G G       + C TC 
Sbjct:   111 GGGPRAQRGSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQTCGTCH 170

Query:   254 GIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
             G G+V +    F    TC TC G G+IIKD C  C G G     K + V IPAGVD+GD 
Sbjct:   171 GHGQVQMRQGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGVDTGDR 230

Query:   310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
             IR+   G AG  G   G+L++++ V +  IF RDG ++Y +  +SF  A LGG+V+VPTL
Sbjct:   231 IRLSGEGEAGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEVEVPTL 290

Query:   370 SGKVQVK 376
              G+V +K
Sbjct:   291 DGRVSLK 297

GO:0006457 "protein folding" evidence=ISS

TIGR_CMR|VC_0856 VC_0856 "dnaJ protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 123/307 (40%), Positives = 168/307 (54%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD YE+LGV  +AS+ +IKKA+  LA +YHPD N  +  A  KF+E+++AYE L D++
Sbjct:     2 SKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDAQ 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
             K+A YD+      E     AG   GF   G   G        F D F  +F +IF     
Sbjct:    62 KKAAYDQYGHAAFEQ---GAG---GFGGGGFGGG-----GADFGDIFGDVFGDIFGGGRR 110

Query:   200 HFAP------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
                P      D++  + LS  EA +GC+K +     V CD+C G G       + C TC 
Sbjct:   111 GGGPRAQRGSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQTCGTCH 170

Query:   254 GIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
             G G+V +    F    TC TC G G+IIKD C  C G G     K + V IPAGVD+GD 
Sbjct:   171 GHGQVQMRQGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGVDTGDR 230

Query:   310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
             IR+   G AG  G   G+L++++ V +  IF RDG ++Y +  +SF  A LGG+V+VPTL
Sbjct:   231 IRLSGEGEAGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEVEVPTL 290

Query:   370 SGKVQVK 376
              G+V +K
Sbjct:   291 DGRVSLK 297

GO:0006457 "protein folding" evidence=ISS

DICTYBASE|DDB_G0278789 DDB_G0278789 "heat shock protein DnaJ family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 118/320 (36%), Positives = 175/320 (54%)

Query:    68 RRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQE 127
             +R   +T    S KRD YE+LGV  +AS+ +IKKAF+ LAK+YHPD N+++P+A + F E
Sbjct:    59 KRYFRSTSPILSEKRDLYEVLGVSRDASKQDIKKAFYALAKKYHPDTNRDDPNAHKTFAE 118

Query:   128 IRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFH 187
             I +AY+ L D +KR+ YD    +G+  E    G   GF   G   G     +  F   F 
Sbjct:   119 ISNAYDVLYDDKKRSVYDTAGHQGATQENMEHG---GF--PGGMGGQNVNLEDLFGGGFD 173

Query:   188 KIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGF 240
                +++F         + S    D++V L L F EA  G  K +SF     C  C G G 
Sbjct:   174 --LNDLFGGGGGGGGGKKSSVGADMEVNLHLDFMEAVNGAEKDISFYGGTKCTPCDGSGA 231

Query:   241 PADAKTKICSTCRGIGRVTIPP----FTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEV 296
                 K + C  C G G  T         + C  CKG G++IK+ C +CKG G+  G + V
Sbjct:   232 KPGTKPQTCKQCGGTGSQTRSNGFFHMATNCRACKGTGKVIKEPCSSCKGKGITQGERTV 291

Query:   297 KVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFT 356
              + +PAG+++G TI++   G     GR+ GNLF+ + V++  +F R G D+++D  I+ +
Sbjct:   292 NIKVPAGINNGTTIKLAGEGEPSKTGRR-GNLFVHITVSEHELFRRQGNDIHLDVPITIS 350

Query:   357 QAILGGKVDVPTLSGKVQVK 376
             QAILG  V +PTLSG+V++K
Sbjct:   351 QAILGDTVSIPTLSGEVELK 370

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|P08622 dnaJ [Escherichia coli K-12 (taxid:83333)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 118/305 (38%), Positives = 175/305 (57%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct:     2 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
             KRA YD+    G  +  +  G   G  + G A+         FSD F  +F +IF     
Sbjct:    62 KRAAYDQY---G--HAAFEQGGMGGGGFGGGAD---------FSDIFGDVFGDIFGGGRG 107

Query:   197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
              + +    D++  + L+  EA +G TK +       CD CHG G     + + C TC G 
Sbjct:   108 RQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGS 167

Query:   256 GRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
             G+V +    F    TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct:   168 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIR 227

Query:   312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
             +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct:   228 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 287

Query:   372 KVQVK 376
             +V++K
Sbjct:   288 RVKLK 292

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA;IMP

GO:0006457 "protein folding" evidence=IDA

GO:0042026 "protein refolding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006260 "DNA replication" evidence=IEA;IMP

GO:0009408 "response to heat" evidence=IEA;IEP

GO:0046872 "metal ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043335 "protein unfolding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|SO_1127 SO_1127 "chaperone protein DnaJ" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 123/308 (39%), Positives = 171/308 (55%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD YE+LGV  +AS+ EIKKA+  LA ++HPD N  + +A+  F+E+++AYE L D+ 
Sbjct:     2 SKRDYYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDAN 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFE---- 195
             K+A YD+    G +  +   G   G+  AGD           F D F  +F +IF     
Sbjct:    62 KKAAYDQFGHAGVDPNRGGGG---GYGGAGD-----------FGDIFGDVFGDIFGGGRR 107

Query:   196 ---DETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
                   +    D++  L LS  EA KG TK +       CD C G G         C+TC
Sbjct:   108 GGGQRQAARGSDLRYNLELSLEEAVKGLTKELRIPTLASCDVCDGSGAKKGTSATTCTTC 167

Query:   253 RGIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
              G G+V +    FT    C TC G G+IIKD C  C G G V+  K + V IPAGVD+GD
Sbjct:   168 HGQGQVQMRQGFFTVQQPCPTCHGRGKIIKDPCAKCHGDGRVEKTKTLSVKIPAGVDTGD 227

Query:   309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
              IR+   G AG  G   G+L++++ V +  IF RDG ++Y +  ISF++A LGG+++VPT
Sbjct:   228 RIRLAGEGEAGEFGAPAGDLYVQVSVREHAIFVRDGNNLYCEVPISFSKAALGGEIEVPT 287

Query:   369 LSGKVQVK 376
             L GKV +K
Sbjct:   288 LDGKVSLK 295

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|SPO_0044 SPO_0044 "chaperone protein DnaJ" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 122/310 (39%), Positives = 175/310 (56%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD Y++LGV + AS DEIKKA+   AK+ HPD NK+NP A+  F+E+ +AYE L+D+E
Sbjct:     2 SKRDYYDVLGVSKGASADEIKKAYRGKAKELHPDRNKDNPDAESLFKEVNEAYEVLKDAE 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYA-YQTHFSDSFHKIFSEIFEDET 198
             K+A YDR    G  +  +  G   G R  G   GF    + + FSD F  +F +    + 
Sbjct:    62 KKAAYDRF---G--HAAFEGGMGGGQRPGG---GFGSGDFSSAFSDVFEDLFGDFMGGQR 113

Query:   199 ------SHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
                   +    D++  L ++  EA  G  K ++    V C SC G G     +   C TC
Sbjct:   114 GGGGRRAARGSDLRYNLRVTLEEAFSGLQKTINVPTAVACSSCEGTGAEGGVEPTTCPTC 173

Query:   253 RGIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
              G+G+V      FT   TC TC GLG+IIK+ C +C+G G V+  + + V IPAGV++G 
Sbjct:   174 SGMGKVRAQQGFFTVERTCPTCSGLGQIIKNPCKSCRGQGRVEKDRALSVNIPAGVETGT 233

Query:   309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
              IR+   G AG RG   G+L+I ++VA   +F RDG ++Y    +S  +A LGG ++VPT
Sbjct:   234 RIRLAGEGEAGMRGGPPGDLYIFVEVAKHELFERDGVNLYCRVPVSMAKAALGGAIEVPT 293

Query:   369 LSG---KVQV 375
             + G   +VQV
Sbjct:   294 IDGGRGRVQV 303

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|Q47XI7 dnaJ "Chaperone protein DnaJ" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 116/301 (38%), Positives = 162/301 (53%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD YE LGV ++AS+ E+KKA+  LA +YHPD  + + S +  F+E+++AYE L D +
Sbjct:     2 SKRDYYETLGVSQDASEKEVKKAYKKLAMKYHPDRTQGDKSKEETFKEVKEAYEILNDDQ 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
             KRA YD+      E      G+  G    G   GF   +   F D F             
Sbjct:    62 KRAAYDQYGHAAFEQ----GGNGGGG--GGHGGGFGQDFGDIFGDIFGGGGGGRGRQRQQ 115

Query:   200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVT 259
                 D++  + LS  +A KG +  +    +V C+ C G G       K CSTC G G+V 
Sbjct:   116 R-GSDLRYNVDLSLEDAVKGKSLEIKVPTYVSCEPCDGSGAKKGTSAKTCSTCHGHGQVQ 174

Query:   260 IPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEA 315
             +    F    TC TC G G++I D C +C+G G V+  K + V IPAGVD+GD IR+   
Sbjct:   175 MRQGLFAVQQTCPTCSGKGKVIADKCTSCRGQGRVEKTKTLSVKIPAGVDTGDRIRLSGE 234

Query:   316 GNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQV 375
             G AG  G   G+L++++ V D  IF RD   +Y +  ISF  A LGG ++VPTL GKV++
Sbjct:   235 GEAGEHGAPAGDLYVQVNVRDHEIFVRDENHLYCEVPISFVTAALGGDIEVPTLGGKVKL 294

Query:   376 K 376
             K
Sbjct:   295 K 295

GO:0006457 "protein folding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38813	DNAJ1_ARATH	No assigned EC number	0.6057	0.7468	0.7377	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015152001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (411 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033682001	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence;; Essential component [...] (313 aa)	•		•						0.591
	GSVIVG00015306001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; Essential component [...] (298 aa)	•		•						0.579
	GSVIVG00005738001	SubName- Full=Chromosome chr3 scaffold_157, whole genome shotgun sequence; (626 aa)	•		•						0.509
	GSVIVG00012517001	SubName- Full=Chromosome undetermined scaffold_388, whole genome shotgun sequence; Flags- Fragm [...] (372 aa)			•						0.492
	GSVIVG00004141001	SubName- Full=Chromosome undetermined scaffold_611, whole genome shotgun sequence; (468 aa)			•						0.492
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)			•						0.489
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.489
	GSVIVG00022013001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)	•		•						0.488
	GSVIVG00001482001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (103 aa)			•						0.487
	GSVIVG00018506001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (649 aa)			•						0.486

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-101
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-100
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	3e-97
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	4e-84
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	3e-79
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	1e-75
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	5e-75
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-73
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	4e-73
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	2e-71
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-65
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-65
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	8e-65
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-64
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-63
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	8e-63
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-62
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-62
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	4e-61
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-58
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-56
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	7e-55
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	3e-54
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	4e-54
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	8e-53
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-52
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	7e-52
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	5e-46
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	5e-35
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	5e-34
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	3e-33
pfam00226	63	pfam00226, DnaJ, DnaJ domain	1e-29
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	9e-27
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	2e-23
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-23
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	4e-19
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-18
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	1e-17
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	2e-13
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	4e-09
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-08
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	5e-07
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	6e-07
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	3e-06
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	6e-06
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	1e-05
PRK01356	166	PRK01356, hscB, co-chaperone HscB; Provisional	1e-05
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	4e-05
PRK03578	176	PRK03578, hscB, co-chaperone HscB; Provisional	4e-05
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	4e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	5e-04
PRK05014	171	PRK05014, hscB, co-chaperone HscB; Provisional	7e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	0.002
PLN03165	111	PLN03165, PLN03165, chaperone protein dnaJ-related	0.002
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	0.003

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  304 bits (781), Expect = e-101
 Identities = 130/312 (41%), Positives = 171/312 (54%), Gaps = 30/312 (9%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D YE+LGV ++AS++EIKKA+  LAK+YHPD NK+   A+ KF+EI +AYE L D EKRA
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDPEKRA 59

Query: 143 QYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED------ 196
           QYD+    G            G    G   GF       F   F  IF + F        
Sbjct: 60  QYDQFGHAGFNGG--------GGGGGGGFNGF----DIGFFGDFGDIFGDFFGGGGGSGR 107

Query: 197 ---ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
                     D++ +L L+F EA  G  K +       C++CHG G       K C TC 
Sbjct: 108 RRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCG 167

Query: 254 GIGRVTI---PPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
           G G+V      PF       TC TC G G+IIK+ C TCKG G V   K + V IPAGVD
Sbjct: 168 GTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVD 227

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           +G  +RV   GNAG  G  +G+L++ ++V    IF RDG D+Y++  ISFTQAILGG+++
Sbjct: 228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIE 287

Query: 366 VPTLSGKVQVKV 377
           VPTL G V++K+
Sbjct: 288 VPTLDGDVKLKI 299

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  303 bits (777), Expect = e-100
 Identities = 127/312 (40%), Positives = 165/312 (52%), Gaps = 31/312 (9%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV ++AS++EIKKA+  LAK+YHPD N  +  A+ KF+EI +AYE L D E
Sbjct: 2   AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KRA YD+    G    K       GF                F   F  IF + F     
Sbjct: 62  KRAAYDQF---GHAGFKAGGFGGFGF--------------GGFGGDFGDIFEDFFGGGGG 104

Query: 200 HFAP--------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICST 251
                       D++  L ++  EA  G  K +     V C +CHG G       K C T
Sbjct: 105 GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPT 164

Query: 252 CRGIGRVTI---PPFTS---TCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
           C G G+V       F S   TC TC G G+IIKD C  CKG G V   K + V IPAGVD
Sbjct: 165 CNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVD 224

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
            GD IR+   G AG  G   G+L++ + V   PIF RDG D+Y +  ISFT+A LGG+++
Sbjct: 225 DGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIE 284

Query: 366 VPTLSGKVQVKV 377
           VPTL G+V++K+
Sbjct: 285 VPTLDGRVKLKI 296

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  294 bits (756), Expect = 3e-97
 Identities = 133/308 (43%), Positives = 176/308 (57%), Gaps = 25/308 (8%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV  NAS+DEIKKA+  LA +YHPD N  +  A+ KF+EI++AYE L D +
Sbjct: 2   AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KRA YD+          Y  G A  F   G   GF       F D F  IF +IF     
Sbjct: 62  KRAAYDQ----------Y--GHA-AFEQGGGGGGF--GGGGGFGDIFGDIFGDIFGGGRG 106

Query: 200 HFAP------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
                     D++  + ++  EA +G TK +     V CD+CHG G       K C TC 
Sbjct: 107 GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCH 166

Query: 254 GIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
           G G+V +    FT   TC TC G G+IIKD C  C G G V+  K + V IPAGVD+GD 
Sbjct: 167 GAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDR 226

Query: 310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
           IR+   G AG RG   G+L++++ V + PIF RDG D+Y +  ISFT A LGG+++VPTL
Sbjct: 227 IRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTL 286

Query: 370 SGKVQVKV 377
            G+V++K+
Sbjct: 287 DGRVKLKI 294

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  261 bits (668), Expect = 4e-84
 Identities = 122/311 (39%), Positives = 171/311 (54%), Gaps = 17/311 (5%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           K+D YE+LGV  NA+++EIKKA+  LAK+YHPD N  +  A++KF+EI +AYE L D +K
Sbjct: 4   KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQK 63

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS- 199
           RAQYD+      +   +  G   GF   G   G        F D F  IF + F      
Sbjct: 64  RAQYDQFGHAAFDPGGFGQG---GFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRR 120

Query: 200 -HFAP----DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
               P    DI+ +L L+F EAA G  K +  + F  CD C G G    +K   C  C G
Sbjct: 121 AETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHG 180

Query: 255 IGRVTI---PPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS 306
            G+V      PF       TC  C G G+II D C  C G+G +   +++KV IPAG+D 
Sbjct: 181 TGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDD 240

Query: 307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDV 366
           G  I +   G  G +G  +G+L+I +KV   P+F R+G +VY++  I+FT A LGG++++
Sbjct: 241 GQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEI 300

Query: 367 PTLSGKVQVKV 377
           PTL GKV+  +
Sbjct: 301 PTLDGKVKFTI 311

Length = 386

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  248 bits (635), Expect = 3e-79
 Identities = 124/313 (39%), Positives = 167/313 (53%), Gaps = 30/313 (9%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV ++AS+DEIKKA+  L+K+YHPD NK    A  KF+EI +AYE L D +
Sbjct: 2   AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQ 60

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KRAQYD+    G  N+ +  G   G  + G   GF           F  IFS  F     
Sbjct: 61  KRAQYDQFGHAGP-NQGFGGGGFGGGDFGG---GF----------GFEDIFSSFFGGGGR 106

Query: 200 HFAP-------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
              P       D+Q  + L+F EA  G  K +       CD+CHG G       + CS C
Sbjct: 107 RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHC 166

Query: 253 RGIGRVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV 304
            G G+V++   T         TC  C G G+ IK+ C TC G G V   K++ V IPAGV
Sbjct: 167 GGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGV 226

Query: 305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKV 364
           D+G  IRV   G  G  G   G+L++  +V     F RDG D+Y +  ++F QA LG ++
Sbjct: 227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEI 286

Query: 365 DVPTLSGKVQVKV 377
           +VPTL GKV++K+
Sbjct: 287 EVPTLHGKVKLKI 299

Length = 376

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  239 bits (611), Expect = 1e-75
 Identities = 118/312 (37%), Positives = 164/312 (52%), Gaps = 27/312 (8%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
             + Y+ LGV ++ASQDEIKKA+  L+K+YHPD NK  P A+ K++E+++AYETL D +K
Sbjct: 3   NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQK 61

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSH 200
           RA YD+  + G+ N  +  G A GF     + GF           F  IFS  F    + 
Sbjct: 62  RAAYDQYGAAGA-NGGF-GGGAGGFGGFDGSGGF---------GGFEDIFSSFFGGGGAR 110

Query: 201 FAP-------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
             P       D+Q  + L F EA  G  K VS++    C +C+G G         C  C 
Sbjct: 111 RNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCH 170

Query: 254 GIGRVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
           G G +T+   T         TC  C G G+ IK+ C TC G+G       V V IPAGV+
Sbjct: 171 GSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVE 230

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           +G  IR+   G AG  G  +G+L++  +V     F RDG+ +Y    ISF QA LG  V+
Sbjct: 231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVE 290

Query: 366 VPTLSGKVQVKV 377
           VPT+ G V++K+
Sbjct: 291 VPTVHGDVELKI 302

Length = 380

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  237 bits (607), Expect = 5e-75
 Identities = 127/308 (41%), Positives = 165/308 (53%), Gaps = 23/308 (7%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S+RD YE+LGV  +AS+DEIKKA+  LA QYHPD N +NP A++KF+E  +AYE LRD+E
Sbjct: 2   SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAE 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KRA+YDR    G        G   GF  A D          HFSD F  +F   F    S
Sbjct: 62  KRARYDRFGHAGVNGN----GGFGGFSSAEDIFS-------HFSDIFGDLFG--FSGGGS 108

Query: 200 HFAP------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
              P      D++  L +SF +AAKG    +     V CD C G G       + C  C 
Sbjct: 109 RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCG 168

Query: 254 GIGRVTIPP----FTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
           G G+V            C  C+G GR+I   C  CKGSG+V   +E+KV IPAGVD+G  
Sbjct: 169 GSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSR 228

Query: 310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
           +R+   G  G  G   G+L++ + V DD IF R G D+ V   ISF QA LG +++VPTL
Sbjct: 229 LRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTL 288

Query: 370 SGKVQVKV 377
              V + +
Sbjct: 289 DDPVTLDI 296

Length = 373

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  234 bits (598), Expect = 1e-73
 Identities = 116/319 (36%), Positives = 172/319 (53%), Gaps = 32/319 (10%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV  NA+Q+EIKKA+  LA++YHPD NKN P A+ KF+EI +AY+ L D E
Sbjct: 1   AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPE 59

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKI-----FSEIF 194
           KR  YD+          +S    +        EGF      +  D    +     F +IF
Sbjct: 60  KRKLYDQFGHAA-----FSGSGQQQQ----GQEGFSDFGGGNIEDILEDVFDIFGFGDIF 110

Query: 195 EDETS-------HFAP----DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPAD 243
               +       +  P    DI   + +S  EA  G T  +    +VPC++C G G+   
Sbjct: 111 GRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPG 170

Query: 244 AKTKICSTCRGIGRVTIPPF----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVT 299
           +  K+C TC G G +         + TC TC G G ++++ C  C G G+V   + +KV 
Sbjct: 171 SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEG-VLREPCSKCNGRGLVIKKETIKVR 229

Query: 300 IPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAI 359
           IP GVD+G  +RVP  G+AG  G   G+L+I +KV   P+F R G ++Y+D NI+  +A+
Sbjct: 230 IPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAV 289

Query: 360 LGGKVDVPTLSG-KVQVKV 377
           LG +++VP L G K +VK+
Sbjct: 290 LGTELEVPLLDGKKEKVKI 308

Length = 382

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  232 bits (594), Expect = 4e-73
 Identities = 118/313 (37%), Positives = 161/313 (51%), Gaps = 33/313 (10%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
            D YE+LGV  +A +DE+K+A+  LA++YHPD NK  P A+ +F+EI  AYE L D E R
Sbjct: 3   ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETR 61

Query: 142 AQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHF 201
           A+YD+    G          A GF   GD  GF        +D F   FS          
Sbjct: 62  ARYDQFGEAG-------VSGAAGFPDMGDMGGF--------ADIFETFFSGFGGAGGQGG 106

Query: 202 AP---------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
                      D++ +L L F EA  G  K +       C++C G G         CSTC
Sbjct: 107 RRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTC 166

Query: 253 RGIG---RVTIPPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV 304
            G G   R T  PF      S C TC G G++I+D C  C G GV    K++K+ IPAGV
Sbjct: 167 GGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGV 226

Query: 305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKV 364
           D+G  +RV   G+AG RG   G+L++ L V +DP F RDG ++  +  IS+ QAILG  +
Sbjct: 227 DTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTL 286

Query: 365 DVPTLSGKVQVKV 377
           +V T+ G V++ +
Sbjct: 287 EVDTVDGPVELTI 299

Length = 374

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  228 bits (584), Expect = 2e-71
 Identities = 114/313 (36%), Positives = 166/313 (53%), Gaps = 25/313 (7%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           + +D YE+LG+ + AS DEIKKAF  LA +YHPD NK N  A+ KF+EI +AY+ L D +
Sbjct: 2   ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDA--EGFRYAYQTHFSDSFHKIFSEIFEDE 197
           K+AQYD+          +   D  G    G     GF ++    F D F   F   F   
Sbjct: 62  KKAQYDQ----------FGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGGFGSS 111

Query: 198 TS-----HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
           +          DI+  + L+F EA  G  K +S      C++C+G G       K C  C
Sbjct: 112 SRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKC 171

Query: 253 RGIGRVTI---PPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV 304
            G G++ +    P      T+TC  C G G++I+D C  C G G V   +++KV +PAGV
Sbjct: 172 GGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGV 231

Query: 305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKV 364
           D+G+ I +   G  G  G   G+L+I ++VA    F R G D+Y+D +ISF +A LG ++
Sbjct: 232 DTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEI 291

Query: 365 DVPTLSGKVQVKV 377
            VPT+ G+V+ +V
Sbjct: 292 KVPTVDGEVKYEV 304

Length = 380

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  213 bits (544), Expect = 1e-65
 Identities = 121/311 (38%), Positives = 167/311 (53%), Gaps = 27/311 (8%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           ++ RD YE+LG+ ++AS ++IKKA+  LA +YHPD NK  P A+ KF+EI +AY  L D+
Sbjct: 2   ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDA 60

Query: 139 EKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDET 198
           EKRAQYDR    G +N +YSA D            FR A    F D F   F        
Sbjct: 61  EKRAQYDRFGHAGIDN-QYSAEDI-----------FRGADFGGFGDIFEMFFGG--GGRR 106

Query: 199 SHFAP----DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
               P    D++ +L ++  EAA G  K +       C +C G G       K C TC G
Sbjct: 107 GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGG 166

Query: 255 IGRVT------IPPF--TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS 306
            G+VT      +  F  T+TCSTC G G++I+  C  C G+G V   +++ V +PAG DS
Sbjct: 167 TGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADS 226

Query: 307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDV 366
           G  +++   G AG  G   G+L+I L V +   F R G D+  +  ISFTQA LG  + V
Sbjct: 227 GLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMV 286

Query: 367 PTLSGKVQVKV 377
           PTL GKV++ +
Sbjct: 287 PTLYGKVKMNI 297

Length = 377

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  213 bits (543), Expect = 2e-65
 Identities = 111/312 (35%), Positives = 161/312 (51%), Gaps = 15/312 (4%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           ++D Y++LGVP++A++ EIKKA+  LA++YHPDANK +  A+ +F+EI +AY+ L D +K
Sbjct: 8   EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67

Query: 141 RAQYDRRRS---RGSENEKYSAGDAEGFRY-------AGDAEGFRYAYQTHFSDSFHKIF 190
           R +YD  RS    G        G   GF +        G   G          D F  +F
Sbjct: 68  RKEYDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLF 127

Query: 191 SEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICS 250
           +            D++ E+ LSF EA  G T  +   +  PC +C G G       ++C 
Sbjct: 128 NRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCP 187

Query: 251 TCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS 306
           TC G G+V+        +  C  CKG G I  D C+ CKGSG     + ++V IPAGV  
Sbjct: 188 TCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSD 247

Query: 307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDV 366
           G  IR+   G  G RG   G+L++ + V   P+F R G ++ V   ++F +A LG +V V
Sbjct: 248 GQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRV 307

Query: 367 PTLSG-KVQVKV 377
           PTL G  V VK+
Sbjct: 308 PTLGGPPVTVKL 319

Length = 389

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  211 bits (540), Expect = 8e-65
 Identities = 116/323 (35%), Positives = 163/323 (50%), Gaps = 33/323 (10%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           +D Y+ LGV  +AS +EIKKA+  LA++ HPDAN  +P+A+ +F+ + +A++ L D  KR
Sbjct: 9   KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68

Query: 142 AQYD--RRRSRGS---ENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHK-------- 188
            +YD  RR   G           G   GF   GD   F      + +D F          
Sbjct: 69  KEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEF------NLNDLFDAAGRGGGGG 122

Query: 189 ---IFSEIFEDETSHFAP-------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGR 238
              +F  +F        P       D++ E  L F EAAKG T  +   +  PC +CHG 
Sbjct: 123 IGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGS 182

Query: 239 GFPADAKTKICSTCRGIGRVTIPP----FTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVK 294
           G       K+C TC G G ++       F+  C+ C+G G II+D C  CKG+GV    +
Sbjct: 183 GARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTR 242

Query: 295 EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNIS 354
            + V IP GV+ G  IR+   G AG RG   G+L++ + V  D +F RDG D+ V   +S
Sbjct: 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVS 302

Query: 355 FTQAILGGKVDVPTLSGKVQVKV 377
           FT+  LG  + VPTL G V VKV
Sbjct: 303 FTELALGSTLSVPTLDGPVGVKV 325

Length = 392

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  210 bits (535), Expect = 2e-64
 Identities = 119/312 (38%), Positives = 161/312 (51%), Gaps = 29/312 (9%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
             KRD YE+LGV  +AS++EIKK++  LA +YHPD N  +  A+  F+E  +AYE L D 
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60

Query: 139 EKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDET 198
           +KR  YD+    G     +S     GF    D           FS SF  IF + F    
Sbjct: 61  KKRGIYDQYGHEGLSGTGFS-----GFSGFDDI----------FS-SFGDIFEDFFGFGG 104

Query: 199 -----SHFAP----DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKIC 249
                S  A     D++ +L L F EAA G  K +       C+ CHG G         C
Sbjct: 105 GRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTC 164

Query: 250 STCRGIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             C G G+VT     F+  +TC  C+G+G++I   C TC G G V   K V+V IPAGVD
Sbjct: 165 PQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVD 224

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           +G  +R+   G AG RG   G+L++ L V     F RDG DV+    ISF QA LG +++
Sbjct: 225 TGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIE 284

Query: 366 VPTLSGKVQVKV 377
           VPTL G+ ++K+
Sbjct: 285 VPTLEGERELKI 296

Length = 366

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  208 bits (530), Expect = 2e-63
 Identities = 115/309 (37%), Positives = 161/309 (52%), Gaps = 22/309 (7%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           KRD YE+LGV  NA + EIKKA+  LA++YHPD +     A+ KF+EI +AY  L D EK
Sbjct: 4   KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEK 62

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEI-FEDETS 199
           R +YD+    G +   +S  D   F      + F+      F      IF    F   + 
Sbjct: 63  RQRYDQFGHAGMDG--FSQEDI--FNNINFEDIFQ-----GFGFGIGNIFDMFGFGGGSR 113

Query: 200 H---FAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIG 256
           H      DI  E+ ++  EAA G  K +       C  C+G      ++ K C TC G G
Sbjct: 114 HGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTG 173

Query: 257 RVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
           +V     T        +TC  C+G G+I++  C  C G GVV   K + V IPAGV++G 
Sbjct: 174 QVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGS 233

Query: 309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
            +RV   G  G RG + G+L++ +KV    IF R+GA++Y +  ISF QA LG  VDVPT
Sbjct: 234 RLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPT 293

Query: 369 LSGKVQVKV 377
           + G V++K+
Sbjct: 294 IDGPVELKI 302

Length = 378

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  205 bits (524), Expect = 8e-63
 Identities = 106/311 (34%), Positives = 157/311 (50%), Gaps = 27/311 (8%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDAN-KNNPSAKRKFQEIRDAYETLRDSE 139
           K+D YE+LGV  NA+Q+EIK+A+  L K++HPD + +N   A++KF+EI++AYE L D +
Sbjct: 3   KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQ 62

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHK-IFSEIFED-- 196
           KRA YDR          Y  G+   ++      GF       F + F++ IF   F +  
Sbjct: 63  KRAMYDRF--------GY-VGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGERR 113

Query: 197 ------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICS 250
                 E +    DI+ E+ ++ ++   G    V +D +  C  C G G    +    C 
Sbjct: 114 TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCP 173

Query: 251 TCRGIGRV---TIPPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPA 302
            C G GR+       F       TC  C G G+I  ++C  C GSG +       V IPA
Sbjct: 174 KCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA 233

Query: 303 GVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGG 362
           GV+ G  +R+   GNAG  G  +G+L++ ++V  DP F R G+D+  D  I + QAILG 
Sbjct: 234 GVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGT 293

Query: 363 KVDVPTLSGKV 373
            V+VP   G  
Sbjct: 294 TVEVPLPEGGT 304

Length = 369

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  206 bits (526), Expect = 1e-62
 Identities = 116/322 (36%), Positives = 163/322 (50%), Gaps = 30/322 (9%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           KRD YE+LGV  +A +DEIKKA+  LA +YHPD N +N  A+  F+E+ +AYE L + +K
Sbjct: 2   KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSF----------HKIF 190
           R +YD+    G      SA    G  Y G    F   +   F+D F             F
Sbjct: 62  RRRYDQ---FGHAGVGSSAASGGGPGYGGGGGDFNDIFSA-FNDMFGGGARRGGGSPFGF 117

Query: 191 SEIF-----EDETSHFAP--DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPAD 243
            ++F         S   P  D+++ L L+  E AKG  K +     VPC  C+G G    
Sbjct: 118 EDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTG-SKT 176

Query: 244 AKTKICSTCRGIGRVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVVDGVKE 295
             T+ C TC G G V     T        + C TC G GR++KD C  C G G+  G   
Sbjct: 177 GATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVT 236

Query: 296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISF 355
           VKVT+PAGV  G+ + +   GNAG RG   G+L + ++     +F R+G DV  +  +S+
Sbjct: 237 VKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSY 296

Query: 356 TQAILGGKVDVPTLSGKVQVKV 377
              +LG KV+VPTL G V++ +
Sbjct: 297 PDLVLGTKVEVPTLDGAVKLTI 318

Length = 397

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  205 bits (523), Expect = 2e-62
 Identities = 116/327 (35%), Positives = 162/327 (49%), Gaps = 46/327 (14%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           + KRD YE+LGV + A+ DEIKKA+   A QYHPD N  +  A+ KF+E  +AY+ L D 
Sbjct: 2   AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61

Query: 139 EKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFS---EIFE 195
           +KR++YD+    G        G A G  ++G  EG           S   IFS   +IF 
Sbjct: 62  DKRSRYDQFGHAGV------GGAAGGGGFSG--EGM----------SMEDIFSMFGDIFG 103

Query: 196 DETSHFA-----------------PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGR 238
                F                   D++V++ L+  E + G  K      +VPC  CHG 
Sbjct: 104 GHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGT 163

Query: 239 GFPADAKTKICSTCRGIGRVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVV 290
           G   +  ++ C TC+G G VT    T        STC TC G G+IIK  C  C G G+V
Sbjct: 164 GAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV 223

Query: 291 DGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVD 350
            G + + V IPAGV  G  + +   GNAG  G  +G+L + ++    P   RD  D+  +
Sbjct: 224 YGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYN 283

Query: 351 SNISFTQAILGGKVDVPTLSGKVQVKV 377
             +S   A LGG V+VPT+ GK +VK+
Sbjct: 284 LLLSVPTAALGGAVEVPTIDGKAKVKI 310

Length = 386

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  201 bits (512), Expect = 4e-61
 Identities = 115/313 (36%), Positives = 160/313 (51%), Gaps = 35/313 (11%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           SKRD YE+LGV  NAS DE+KKA+  LA++YHPD NK  P A+ KF+E+++AY+TL D +
Sbjct: 2   SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQ 60

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           K+A YD+       N+ +  G A  F                    F  IF   F     
Sbjct: 61  KKAHYDQF-GHTDPNQGFGGGGAGDF------------------GGFSDIFDMFFGGGGG 101

Query: 200 HFAP-------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
              P       D+Q  + L F EA  G    +       C +CHG G     K + CS C
Sbjct: 102 RRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHC 161

Query: 253 RGIGRVTI---PPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV 304
            G G++ +    PF        C  C+G G+IIK  C TC G G V   K++ V +PAG+
Sbjct: 162 GGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGI 221

Query: 305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKV 364
           D G  +RV   G AG  G   G+L++   V     F RDG D+Y +  ++F Q  LG ++
Sbjct: 222 DHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEI 281

Query: 365 DVPTLSGKVQVKV 377
           +VPTL+GKV++K+
Sbjct: 282 EVPTLNGKVKLKI 294

Length = 371

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  194 bits (495), Expect = 3e-58
 Identities = 106/301 (35%), Positives = 151/301 (50%), Gaps = 14/301 (4%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D Y +LGV + AS +EIKKA+  LA +YHPD N  +  A+++F+E+ +AYE L D++KR 
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 143 QYDRRRSRGSENEKYSAGDA------EGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF-- 194
            YDR    G        G A      +  R    A G  +     F +       E F  
Sbjct: 62  SYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM 121

Query: 195 --EDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
                 +      +V + LSF EAAKG  K +    +  CD+C G G  +    K+C  C
Sbjct: 122 RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRC 181

Query: 253 RGIGRVT----IPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
           +G G+V          STC  C G GR+I D C  C+G G +   + V V IPAGVDSG 
Sbjct: 182 KGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGM 241

Query: 309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
            +++   G+AG  G   G+L++ + V   P+F R G D+ ++  I F  A LG K ++PT
Sbjct: 242 RLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPT 301

Query: 369 L 369
           L
Sbjct: 302 L 302

Length = 391

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  189 bits (480), Expect = 2e-56
 Identities = 108/301 (35%), Positives = 158/301 (52%), Gaps = 23/301 (7%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           +D Y++LGV + ASQ ++KKA+  LAKQYHPD   +   A++KF+EI  AY+ L+D +KR
Sbjct: 3   QDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKR 61

Query: 142 AQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF-----ED 196
           A YDR      +N++   G        G+  GF        +D F   FS+         
Sbjct: 62  AAYDRFGHDAFQNQQSRGG-------GGNHGGF----HPDINDIFGDFFSDFMGGSRRSR 110

Query: 197 ETSHFA--PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
            TS      D++  L ++  EA  G  K++SF + V CD+CHG G         C  C G
Sbjct: 111 PTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSG 170

Query: 255 IG--RVTIPPFT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI 310
           +G  R+    FT    C  C+G G+IIK+ C  C G G     + + V IPAGV++G  I
Sbjct: 171 VGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230

Query: 311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLS 370
           R    G AG RG   G+L++ + +    I+  DGA+++    ISF  A LGG+++VP + 
Sbjct: 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIE 290

Query: 371 G 371
           G
Sbjct: 291 G 291

Length = 372

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  185 bits (470), Expect = 7e-55
 Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 14/299 (4%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           KRD YE+LG+ + AS+DEIKKA+  +A +YHPD NK N  A+  F+E  +AYE L D  K
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSH 200
           RAQYDR      E      G  EGF  +G   GF   ++  F D F   F+     + + 
Sbjct: 62  RAQYDRFGHTAFE----GGGGFEGF--SGGFSGFSDIFED-FGDIFDSFFTGNRGQDKNR 114

Query: 201 F---APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGR 257
                 D+  ++ +S  +A  G   +++    + C+SC G+         IC+ C G GR
Sbjct: 115 KHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGR 174

Query: 258 VT----IPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVP 313
           V         T+TC  C G G+II + C +CKG G +   + +++ IPAG+D    I++ 
Sbjct: 175 VMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMR 234

Query: 314 EAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK 372
             G+     +Q+G+L+IK+ +    IF R+G D+Y    ISFTQA LG ++ + T++ K
Sbjct: 235 GKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASK 293

Length = 365

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  183 bits (466), Expect = 3e-54
 Identities = 110/309 (35%), Positives = 147/309 (47%), Gaps = 31/309 (10%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D YELLGV   AS DEIK A+  LA +YHPD NK    A  KF +I +AY  L D+EKRA
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRA 61

Query: 143 QYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEI-----FEDE 197
            YDR  +  +       GD  G        GF         D F ++F            
Sbjct: 62  HYDRFGT--APGAGMPGGDPFG------GMGFDPM------DIFEQLFGGAGFGGGRGRR 107

Query: 198 TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHG-RGFPADAKTKICSTCRGIG 256
                 D++ E  ++  +A  G    V  D    C+ CHG R  P     K C TCRG G
Sbjct: 108 GPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAG 167

Query: 257 RV-----TIPPFTST---CSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
            V     TI     T   C TC+G G+II D C  C+G G     + VKV +P G+D G 
Sbjct: 168 AVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGY 227

Query: 309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
            IRV   GN G  G  +G+L++ +++   P   R+   +  ++ I F +A LGG++ VPT
Sbjct: 228 RIRVAGMGNEGPGG--NGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPT 285

Query: 369 LSGKVQVKV 377
           L G   ++V
Sbjct: 286 LDGPQVIEV 294

Length = 371

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  183 bits (465), Expect = 4e-54
 Identities = 101/317 (31%), Positives = 153/317 (48%), Gaps = 34/317 (10%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S+R  Y++LGV ++A+ +EIK A+  LA +YHPD NK N  ++ KF+E  +AYE LRD +
Sbjct: 2   SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPK 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSD---SFHKIFSEIFED 196
           KR  YD+    G                   A GF     T FSD    F  IF + F  
Sbjct: 62  KRQAYDQFGKAG---------------VNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGG 106

Query: 197 ETS-----------HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
                             D++  L +S  +AA G    +       C  C+G G    + 
Sbjct: 107 GRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSS 166

Query: 246 TKICSTCRGIGRVT----IPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIP 301
              C  C G G++          +TC TC+G G +I + C TC G G+ +  + + + IP
Sbjct: 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIP 226

Query: 302 AGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILG 361
            GV++G  ++V   G AG  G  HG+L++   +    +F R G D+ +   IS  QAILG
Sbjct: 227 PGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILG 286

Query: 362 GKVDVPTLSGK-VQVKV 377
            +++VPT+ GK  ++K+
Sbjct: 287 AEIEVPTIDGKKAKMKI 303

Length = 372

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  179 bits (457), Expect = 8e-53
 Identities = 105/310 (33%), Positives = 136/310 (43%), Gaps = 43/310 (13%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           RD Y LLGV  NAS  EIK+A+  LA++ HPD N +   A+ KF+EI  AYE L D EKR
Sbjct: 3   RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKR 61

Query: 142 AQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHF 201
              D              G   GF   GD                  +F   F    +  
Sbjct: 62  RIVDLGGDPLESAGGGGGGFGGGFGGLGD------------------VFEAFFGGGAASR 103

Query: 202 AP--------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
            P        D  + + L   E A G TK V+ D  V CD CHG+G   D+K   C TC 
Sbjct: 104 GPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCG 163

Query: 254 GIGRV------------TIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIP 301
           G G V            T  P    C TC+G+G +I D C  C G G V   +E+ V IP
Sbjct: 164 GRGEVQTVQRSFLGQVMTSRP----CPTCRGVGEVIPDPCHECAGDGRVRARREITVKIP 219

Query: 302 AGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILG 361
           AGV  G  IR+   G  G  G   G+L++++      +F RDG D++   ++    A LG
Sbjct: 220 AGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALG 279

Query: 362 GKVDVPTLSG 371
             V V  +  
Sbjct: 280 TTVTVEAILD 289

Length = 378

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  179 bits (455), Expect = 1e-52
 Identities = 102/312 (32%), Positives = 159/312 (50%), Gaps = 21/312 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
            K+D YE+LGV + AS+ EI++A+  LAKQYHPD NK+ P A  K  EI +A + L D +
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKD 60

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KR QYD+    G      S+G +  F   GD E       +    SF  IFS+ F    S
Sbjct: 61  KRKQYDQF---GHAAFDGSSGFSSNF---GDFEDLFSNMGSSGFSSFTNIFSDFFGSNKS 114

Query: 200 HF-----APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
            +        + +++ L+F E   G  K +  D    C  C G G  +++   IC+ C G
Sbjct: 115 DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHG 174

Query: 255 IGRVTIP----PF----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS 306
            G V +      F    ++ C+ C G G+IIK+ C  CKG G     K+++V IP G+  
Sbjct: 175 TGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRP 234

Query: 307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSR-DGADVYVDSNISFTQAILGGKVD 365
              I++ + G+A      +G+L I + + +  +F   +  D+ +  NIS+  AILG ++ 
Sbjct: 235 NQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEII 294

Query: 366 VPTLSGKVQVKV 377
           + TL G ++ K+
Sbjct: 295 IKTLDGDIKYKL 306

Length = 372

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  177 bits (449), Expect = 7e-52
 Identities = 110/324 (33%), Positives = 161/324 (49%), Gaps = 52/324 (16%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDAN-KNNPSAKRKFQEIRDAYETLRDSEK 140
           +D Y++LGV  NASQ++IKKAF  LAK++HPD +  N   A+ KF+EI +AYE L D +K
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF------ 194
           R QYD+    G+ +            +      F +   THFSD  + IF++IF      
Sbjct: 63  RRQYDQ---TGTVD------------FGAGGSNFNWDNFTHFSD-INDIFNQIFGGNFGS 106

Query: 195 --------EDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKT 246
                   +  T +   DI   L +S  +A  G  K + +     C  C G G   + K 
Sbjct: 107 DFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTG-AKNGKL 165

Query: 247 KICSTCRGIGR------------VTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVK 294
             C TC G G+            VT+    +TC TC G GRI ++ C  C G+G V   +
Sbjct: 166 ITCPTCHGTGQQRIVRGQGFFRMVTV----TTCRTCGGRGRIPEEKCPRCNGTGTVVVNE 221

Query: 295 EVKVTIPAGVDSGDTIRVPEAGNA-GGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNI 353
           ++ V IP G      +RV   G + GGR    G+L++ L+V +DP   R   D+YVD  I
Sbjct: 222 DISVKIPKGATDNLRLRVKGKGQSYGGRT---GDLYVVLRVNNDPNIQRINDDLYVDQKI 278

Query: 354 SFTQAILGGKVDVPTLSGKVQVKV 377
           +F QA LGG++++     K  +K+
Sbjct: 279 NFPQAALGGEIEIKLFREKYNLKI 302

Length = 365

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  161 bits (409), Expect = 5e-46
 Identities = 102/302 (33%), Positives = 153/302 (50%), Gaps = 38/302 (12%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           YE+L V ++++Q+ IKK++  LA +YHPD N  +  A+ KF+ I +AY  L D +KRA Y
Sbjct: 6   YEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALY 65

Query: 145 DRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------- 196
           DR                +G   AG       A Q+ FSD F  + S  FED        
Sbjct: 66  DRY-------------GKKGLNQAG-------ASQSDFSDFFEDLGS-FFEDAFGFGARG 104

Query: 197 ---ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
              + S  APD    + LSF EA  GC K +       C+SC G G   D   + C  C 
Sbjct: 105 SKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTG-AKDKALETCKQCN 163

Query: 254 GIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
           G G+V +      F  TC  C+G G+IIK  C  CKG   +   +E+   IP G+D  + 
Sbjct: 164 GQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNR 223

Query: 310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
           + +   GN   +G++ G+L+++ +V +D  F R+G D+++++ + FT   LG  + VP+L
Sbjct: 224 MVLKNKGNEYEKGKR-GDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSL 282

Query: 370 SG 371
            G
Sbjct: 283 KG 284

Length = 369

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  133 bits (336), Expect = 5e-35
 Identities = 88/300 (29%), Positives = 125/300 (41%), Gaps = 39/300 (13%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           YE+L + ++ +  EIKKA+  LA ++HPD   +      KF+EI  AYE L D EKR  Y
Sbjct: 31  YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIY 86

Query: 145 DRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPD 204
           D     G E       DA                    SD F  IF    +        D
Sbjct: 87  DEYGEEGLEG-GEQPADA--------------------SDLFDLIFGGGRKPGGKKRGED 125

Query: 205 IQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIG-RVTIPPF 263
           I   L ++  +   G  + ++ +  V C +C G G P DA    C  C G G RV I   
Sbjct: 126 IVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVD-CKLCNGQGIRVQIRQM 184

Query: 264 TS-------TCSTCKGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPE 314
            S       TC++C G G+II     C  C G GV    K ++V I  GV   +  ++  
Sbjct: 185 GSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVP--NQHKITF 242

Query: 315 AGNAGGR-GRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKV 373
            G A  +     GN+   L       F R+G D+++   IS  +A+ G    +  L G+ 
Sbjct: 243 HGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRK 302

Length = 421

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  123 bits (312), Expect = 5e-34
 Identities = 40/89 (44%), Positives = 60/89 (67%)

Query: 289 VVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY 348
            V   K + V IPAGVD G  +R+   G+AG  G   G+L++ ++V   P+F RDG D+Y
Sbjct: 30  RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLY 89

Query: 349 VDSNISFTQAILGGKVDVPTLSGKVQVKV 377
            +  IS T+A+LGG+++VPTL GKV++K+
Sbjct: 90  CEVPISLTEALLGGEIEVPTLGGKVKLKI 118

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  125 bits (316), Expect = 3e-33
 Identities = 93/312 (29%), Positives = 133/312 (42%), Gaps = 94/312 (30%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           + +D Y +LGVP+NASQDEIKKAF  LA++YHPD NK +P A+ KF+EI +AY  L D E
Sbjct: 2   AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPE 60

Query: 140 KRAQYDRRRSRGSENEKYS-AGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIF-------- 190
           KR  YD     G+        G   G    GD  GF       FSD F ++F        
Sbjct: 61  KRRIYDT---YGTTAASAGWQGPPPGPPGGGDFSGFNVG---DFSDFFQQLFGGRGGFGG 114

Query: 191 -SEIFED--ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTK 247
             ++F      +    D++ EL L+  EA +G  K V                       
Sbjct: 115 FGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVAG------------------- 155

Query: 248 ICSTCRGIGRVT--IPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
                    R++  IPP                         GV +G             
Sbjct: 156 --------ERLSVRIPP-------------------------GVREGQV----------- 171

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
               IR+       G+GRQ G+L++ +++   P+F  +G D+Y   ++    A++GGKV 
Sbjct: 172 ----IRLA------GKGRQGGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVR 221

Query: 366 VPTLSGKVQVKV 377
           V TL G V+V +
Sbjct: 222 VMTLDGPVEVTI 233

Length = 291

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  109 bits (274), Expect = 1e-29
 Identities = 38/63 (60%), Positives = 48/63 (76%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D YE+LGVP +AS +EIKKA+  LA +YHPD N  +P+A+ KF+EI +AYE L D EKRA
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 143 QYD 145
            YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score =  108 bits (271), Expect = 9e-27
 Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 94/314 (29%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           +D Y ++GV        IK A+  LA++YHPD +K  P A+ +F+E+ +A+E L D ++R
Sbjct: 4   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRR 62

Query: 142 AQYDR-----------RRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIF 190
           A+YD+           R+ +  + + ++A D                    F D    IF
Sbjct: 63  AEYDQLWQHRNDPQFNRQFQHGDGQSFNAED--------------------FDD----IF 98

Query: 191 SEIFEDETSHF-------APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPAD 243
           S IF                DI++E+ +   E      + +S+                 
Sbjct: 99  SSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISY----------------- 141

Query: 244 AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAG 303
                           +P + +        G I ++   T         VK     IPAG
Sbjct: 142 ---------------NLPVYNA-------FGMIEQEIPKTLN-------VK-----IPAG 167

Query: 304 VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGK 363
           V +G  IR+   G  G  G  +G+L++ + +A  P+F   G D+ +   ++  +A LG K
Sbjct: 168 VGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAK 227

Query: 364 VDVPTLSGKVQVKV 377
           V VPTL   + + +
Sbjct: 228 VTVPTLKESILLTI 241

Length = 306

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 91.8 bits (229), Expect = 2e-23
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRD 137
           D Y++LGVP +AS +EIKKA+  LA +YHPD N ++P A+ KF+EI +AYE L D
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 91.1 bits (227), Expect = 4e-23
 Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRDSEK 140
            D YE+LGVP +AS DEIKKA+  LA +YHPD N  +   A+ KF+EI +AYE L D EK
Sbjct: 1   TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 85.3 bits (210), Expect = 4e-19
 Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRDSE 139
             D YE+LGVP NAS +EIKKA+  LA +YHPD N  +P  A+ KF+EI +AYE L D E
Sbjct: 5   LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQT---HFSDSFHKIFSEIFED 196
           +RA+YD+  +      K S  ++  F   G  +      +              +++   
Sbjct: 65  RRAEYDKIGADNYFPGK-SYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLSR 123

Query: 197 ETSHFAPD 204
             S  A  
Sbjct: 124 GLSGLAAA 131

Length = 237

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 87.2 bits (215), Expect = 2e-18
 Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           KRD YE+LG+  +A + EIKKAF  LAK+YHPD NK  P A   F EI +A + L + +K
Sbjct: 1   KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK-APDAASIFAEINEANDVLSNPKK 59

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGF 165
           RA YD+    G + E      A+ F
Sbjct: 60  RANYDKYGHDGVDREDDFDFQADVF 84

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 76.1 bits (188), Expect = 1e-17
 Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMT 283
           C +C+G G     K K C TC G G+V              +TC TC G G+IIKD C  
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60

Query: 284 CKGSG 288
           CKG G
Sbjct: 61  CKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 27/65 (41%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 232 CDSCHGRGFPADAKTKICSTCRGIGRVTI----PPFT----STCSTCKGLGRIIKDHCMT 283
           C  CHG G     K K C  C G G+V      P        TC  C G G+IIKD C  
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 284 CKGSG 288
           CKG G
Sbjct: 61  CKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPD--ANKNNPS-----AKRKFQEIRDAYETL 135
           D Y++LGV E+    EIK+A+  L  ++HPD    K  P      AK K QEI+ AYE +
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260

Query: 136 R 136
           +
Sbjct: 261 K 261

Length = 267

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKR-----KFQEIRDAYETLRD 137
           DPYE+LG+ ++ S+ +IKK + ML+ ++HPD      +  R     K++ I  AY  L D
Sbjct: 99  DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158

Query: 138 SEKRAQY 144
            ++R  Y
Sbjct: 159 KKRRENY 165

Length = 610

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)

Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGK-VQVKV 377
           D+YV   IS  +A+LGG V+VPTL G+ V++K+
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKI 33

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPD--ANKNNP-----SAKRKFQEIRDAYE 133
           + D  ++LGV   A QD IKKA+  L  + HPD  A K          K K QEI++AYE
Sbjct: 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171

Query: 134 TLR 136
            ++
Sbjct: 172 DIK 174

Length = 174

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y++LGV  NA   EI + +  LA+ Y+P     N     KF++I +AY+ L D +K+  Y
Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMY 634

Query: 145 DR 146
           ++
Sbjct: 635 NK 636

Length = 1136

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 96  QDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Q  ++K +  L  QYHPDA+       +A ++   +  AY TL+D  +RA+Y
Sbjct: 5   QSRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 291 DGVKEVKVTIPAGVDSGDTIRVPEAG-NAGGRGRQHGNLFIKLKV 334
           DG ++VK+ IPAG   GD +R+   G      G   G+L + L V
Sbjct: 25  DG-RKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRGDLIVTLNV 68

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 85  YELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKRKFQ---EIRDAYETLRDSE 139
           ++LLG+P+  + D   ++K +  +  +YHPD  K     ++      E+ +AY TL+D+ 
Sbjct: 5   FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDAL 64

Query: 140 KRAQY 144
           KRA+Y
Sbjct: 65  KRAEY 69

Length = 166

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 294 KEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKV 334
            +VK+ IP G   G  +R+   G    RG   G+L++++KV
Sbjct: 112 GKVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYVEVKV 152

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 79  SSKRDPYELLGVPENASQDE--IKKAFHMLAKQYHPDANKNNPSAKRKFQ-----EIRDA 131
           S K D + L G+P   + DE  +  A+  +  Q HPD       A+++          +A
Sbjct: 3   SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEA 62

Query: 132 YETLRDSEKRAQY 144
           Y+TLRD  KRA+Y
Sbjct: 63  YQTLRDPLKRARY 75

Length = 176

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 290 VDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVA 335
           +DG   VK+ IPAG  +G+  R+   G    R    G+L++++KV 
Sbjct: 288 LDG--RVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVE 331

Length = 371

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 81  KRDPYELLGVPE---NASQDEIKKAFHMLAKQYHPD--ANKNNPSAKRKFQEIRDAYETL 135
           K D Y LLG+ +    A   +I KA      +YHPD  A   N      F+ I+ A E L
Sbjct: 42  KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVL 101

Query: 136 RDSEKRAQYD 145
            D + R QYD
Sbjct: 102 GDRKLRLQYD 111

Length = 379

>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 13/72 (18%)

Query: 83  DPYELLGVPENASQDEIKKA-----FHMLAKQYHPDANKNNPSAKR-----KFQEIRDAY 132
           D + L G+P   ++ +I        +  L +Q+HPD   N    +R     +   I DAY
Sbjct: 2   DYFTLFGLP---ARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAY 58

Query: 133 ETLRDSEKRAQY 144
           +TL+   KRA+Y
Sbjct: 59  QTLKHPLKRAEY 70

Length = 171

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 83  DPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAK------RKFQEIRDAYET 134
           D + L G+P     D   +K  +  L + YHPD      S        ++  E+  AY+T
Sbjct: 2   DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPD-RFGKASEAEQRKALQQSAEVNPAYQT 60

Query: 135 LRDSEKRAQY 144
           L+D   RA+Y
Sbjct: 61  LKDPLLRAEY 70

Length = 174

>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 231 PCDSCHGRGFPADAKTKICSTCRGIGRVTI-----PPFTSTCSTCKGLGRIIKDHCMTCK 285
           PC  C G G       ++C  C G G VT+         S C  C G G +    C TC+
Sbjct: 43  PCFPCSGTG------AQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLT---CTTCQ 93

Query: 286 GSGV 289
           GSG+
Sbjct: 94  GSGI 97

Length = 111

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 291 DGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKV 334
           DG   VK+ IP G  +G   R+   G    R    G+L+ ++ V
Sbjct: 287 DG--RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVV 328

Length = 371

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	100.0
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.78
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.78
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.76
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.73
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.72
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.71
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.67
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.65
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.64
PRK14282	369	chaperone protein DnaJ; Provisional	99.63
PRK14290	365	chaperone protein DnaJ; Provisional	99.62
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.61
PHA03102	153	Small T antigen; Reviewed	99.6
PRK14298	377	chaperone protein DnaJ; Provisional	99.6
PRK14294	366	chaperone protein DnaJ; Provisional	99.6
PRK14285	365	chaperone protein DnaJ; Provisional	99.59
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PRK10767	371	chaperone protein DnaJ; Provisional	99.58
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.58
PRK14301	373	chaperone protein DnaJ; Provisional	99.57
PRK14288	369	chaperone protein DnaJ; Provisional	99.55
PRK14284	391	chaperone protein DnaJ; Provisional	99.54
PRK14300	372	chaperone protein DnaJ; Provisional	99.53
PRK14287	371	chaperone protein DnaJ; Provisional	99.53
PRK14278	378	chaperone protein DnaJ; Provisional	99.53
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.53
PRK14286	372	chaperone protein DnaJ; Provisional	99.52
PRK14279	392	chaperone protein DnaJ; Provisional	99.51
PRK14281	397	chaperone protein DnaJ; Provisional	99.51
PRK14280	376	chaperone protein DnaJ; Provisional	99.51
PRK14276	380	chaperone protein DnaJ; Provisional	99.5
PRK14293	374	chaperone protein DnaJ; Provisional	99.48
PRK05014	171	hscB co-chaperone HscB; Provisional	99.48
PRK14296	372	chaperone protein DnaJ; Provisional	99.48
PRK14295	389	chaperone protein DnaJ; Provisional	99.47
PRK14297	380	chaperone protein DnaJ; Provisional	99.47
PRK14289	386	chaperone protein DnaJ; Provisional	99.47
PRK14277	386	chaperone protein DnaJ; Provisional	99.47
PRK14292	371	chaperone protein DnaJ; Provisional	99.47
PRK01356	166	hscB co-chaperone HscB; Provisional	99.46
PRK03578	176	hscB co-chaperone HscB; Provisional	99.46
PRK00294	173	hscB co-chaperone HscB; Provisional	99.46
PRK14291	382	chaperone protein DnaJ; Provisional	99.45
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.45
PRK14283	378	chaperone protein DnaJ; Provisional	99.44
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.38
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.37
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.33
PTZ00100	116	DnaJ chaperone protein; Provisional	99.33
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.24
PHA02624	647	large T antigen; Provisional	99.17
PRK01773	173	hscB co-chaperone HscB; Provisional	99.13
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.09
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.04
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.01
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.97
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.86
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.85
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.71
PRK14299	291	chaperone protein DnaJ; Provisional	98.57
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.38
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.37
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.29
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.25
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.01
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	97.98
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	97.93
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.82
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.78
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.65
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.34
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.92
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.67
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.65
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.59
KOG2813	406	consensus Predicted molecular chaperone, contains	96.43
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.17
KOG0431	453	consensus Auxilin-like protein and related protein	95.05
KOG2813	406	consensus Predicted molecular chaperone, contains	93.95
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	93.02
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	92.48
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	85.22
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	84.29
smart00709	160	Zpr1 Duplicated domain in the epidermal growth fac	83.23
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	81.64

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-76  Score=579.20  Aligned_cols=286  Identities=44%  Similarity=0.809  Sum_probs=256.1

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYS  158 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~  158 (403)
                      ++.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||||||||+||++||+||..+..+.   
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~g---   77 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAG---   77 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccC---
Confidence            35679999999999999999999999999999999999889999999999999999999999999999987765421   


Q ss_pred             CCCCCCCcccCCCCcceeccccccccchhhhhhhhhccc--------cCCCCCCceEEEEEeeeccccCcceecccccee
Q 015636          159 AGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE--------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFV  230 (403)
Q Consensus       159 ~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~--------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~  230 (403)
                        +++++       .|.     .|+.+|.++|+++|++.        ...+|.|+.+.|+|||+||+.|+++++.+.+.+
T Consensus        78 --g~gg~-------g~~-----~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~  143 (371)
T COG0484          78 --GFGGF-------GFG-----GFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSV  143 (371)
T ss_pred             --CcCCC-------CcC-----CCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceee
Confidence              11111       111     12224567777777421        245799999999999999999999999999999


Q ss_pred             ecccCCCccccCCCccccCCCccceeEEEeC------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCC
Q 015636          231 PCDSCHGRGFPADAKTKICSTCRGIGRVTIP------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV  304 (403)
Q Consensus       231 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~  304 (403)
                      .|+.|+|+|...+....+|++|+|+|++.+.      .++++|+.|+|+|++++++|.+|+|.|.+...++++|+||+|+
T Consensus       144 ~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv  223 (371)
T COG0484         144 TCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGV  223 (371)
T ss_pred             ECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCC
Confidence            9999999999999999999999999987543      2488999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCCC
Q 015636          305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVLS  381 (403)
Q Consensus       305 ~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~~  381 (403)
                      .+|++|++.|+|+++.+++++|||||+|.|++|+.|.|+|+|||++++|++.+|+||++++||||||+++|+||++-
T Consensus       224 ~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gt  300 (371)
T COG0484         224 DDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGT  300 (371)
T ss_pred             ccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCC
Confidence            99999999999999988889999999999999999999999999999999999999999999999999999999953

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.9e-67  Score=525.34  Aligned_cols=303  Identities=33%  Similarity=0.616  Sum_probs=252.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.||+.||++|+.+.....   +
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~---~   78 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSS---G   78 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCC---C
Confidence            469999999999999999999999999999999997 478999999999999999999999999999865432110   0


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccc-----cCCCCCCceEEEEEeeeccccCcceeccccceeecccC
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-----TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSC  235 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~-----~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C  235 (403)
                      ..++|.  +..+.|+.+.+..| +.|.++|+++|++.     ...++.|++++|.|||+|+|.|+++++.+.+.+.|+.|
T Consensus        79 ~~~~~~--~~~~~~~~~~~~g~-~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C  155 (372)
T PRK14296         79 FSSNFG--DFEDLFSNMGSSGF-SSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKC  155 (372)
T ss_pred             cCcCCC--cccccccccccccc-ccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCC
Confidence            000110  00011111100011 13556777777631     23468899999999999999999999999999999999


Q ss_pred             CCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCC
Q 015636          236 HGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSG  307 (403)
Q Consensus       236 ~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G  307 (403)
                      +|+|........+|+.|+|+|.+.+.        +.+.+|+.|.|.|++++++|..|.|.|++.+.++++|.||||+++|
T Consensus       156 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  235 (372)
T PRK14296        156 FGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPN  235 (372)
T ss_pred             CCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCC
Confidence            99999888888999999999987532        2357999999999999999999999999999999999999999999


Q ss_pred             CEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceee-CCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcC----CCe
Q 015636          308 DTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRD-GADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIV----LSL  382 (403)
Q Consensus       308 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~-G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~----~~~  382 (403)
                      ++|+|+|+|++...++.+|||+|+|+|+||+.|+|+ |+||+++++|+|+|||+|++++|+||||+++|+||.    +.+
T Consensus       236 ~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~  315 (372)
T PRK14296        236 QQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNEL  315 (372)
T ss_pred             CEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcE
Confidence            999999999987667789999999999999999996 899999999999999999999999999999999986    334


Q ss_pred             eeeeeeee
Q 015636          383 LLLLFYSL  390 (403)
Q Consensus       383 ~~~~~~~~  390 (403)
                      +.|---++
T Consensus       316 ~ri~GkGm  323 (372)
T PRK14296        316 IIINNKGL  323 (372)
T ss_pred             EEEcCCCC
Confidence            44444443

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-66  Score=523.34  Aligned_cols=301  Identities=36%  Similarity=0.676  Sum_probs=253.9

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccc-cC-
Q 015636           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENE-KY-  157 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~-~~-  157 (403)
                      +.+|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.||+.||++|+.+.... .. 
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~   86 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR   86 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence            3579999999999999999999999999999999998888899999999999999999999999999975422110 00 


Q ss_pred             ---CCCCCCCCcccC--CCCcceecccccc---ccchhhhhhhhhccc-------cCCCCCCceEEEEEeeeccccCcce
Q 015636          158 ---SAGDAEGFRYAG--DAEGFRYAYQTHF---SDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTK  222 (403)
Q Consensus       158 ---~~~~~~~~~~~~--~~~~f~~~~~~~f---~~~~~~~F~~~f~~~-------~~~~g~di~~~l~ltlee~~~G~~~  222 (403)
                         +.+.+++|.+..  ....|.++|+..+   ..+|.++|+.+|+++       ...+++|++++|.|||+|+|.|+++
T Consensus        87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~  166 (392)
T PRK14279         87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTM  166 (392)
T ss_pred             cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEE
Confidence               000111221100  1122334443111   123567788777631       1347889999999999999999999


Q ss_pred             eccccceeecccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEE
Q 015636          223 HVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKV  298 (403)
Q Consensus       223 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V  298 (403)
                      ++.+.+.+.|+.|+|+|........+|+.|+|+|.+...    .++.+|+.|+|+|++++++|..|.|.|++.+.++++|
T Consensus       167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V  246 (392)
T PRK14279        167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINV  246 (392)
T ss_pred             EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEE
Confidence            999999999999999999888888999999999987543    2478999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEc
Q 015636          299 TIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVI  378 (403)
Q Consensus       299 ~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip  378 (403)
                      .||||+++|++|+|+|+|++.+++..+|||||+|+|+||+.|+|+|+||+++++|+|.|||+|++++|+||||+++|+||
T Consensus       247 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip  326 (392)
T PRK14279        247 RIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVP  326 (392)
T ss_pred             EeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEEC
Confidence            99999999999999999999876777899999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 015636          379 VL  380 (403)
Q Consensus       379 ~~  380 (403)
                      ++
T Consensus       327 ~g  328 (392)
T PRK14279        327 AG  328 (392)
T ss_pred             CC
Confidence            64

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-66  Score=519.81  Aligned_cols=291  Identities=32%  Similarity=0.621  Sum_probs=247.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++||.+|||+|||+||++||||+|+.+++|+++|++|++||+||+||.+|++||++|..+....   ..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~---~~   78 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQA---GA   78 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccC---CC
Confidence            469999999999999999999999999999999998778899999999999999999999999999986543210   00


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccc-------cCCCCCCceEEEEEeeeccccCcceeccccceeecc
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~-------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~  233 (403)
                      .         ...|.++|.     .|.++|+++|+.+       ...+++|+++.|.|||+|+|.|+++++.+.+.+.|+
T Consensus        79 ~---------~~~~~~~f~-----~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~  144 (369)
T PRK14288         79 S---------QSDFSDFFE-----DLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCE  144 (369)
T ss_pred             C---------ccccccchh-----hHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCC
Confidence            0         011222221     2344555555421       124689999999999999999999999999999999


Q ss_pred             cCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCCCE
Q 015636          234 SCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT  309 (403)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~  309 (403)
                      .|+|+|.... ...+|+.|+|+|.+.+.    .++.+|+.|.|+|+++.++|..|.|.|++.+.++++|.||||+++|++
T Consensus       145 ~C~G~G~~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~  223 (369)
T PRK14288        145 SCDGTGAKDK-ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNR  223 (369)
T ss_pred             CCCCcccCCC-CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCE
Confidence            9999998765 57899999999987543    246799999999999999999999999999999999999999999999


Q ss_pred             EEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcC----CCeee
Q 015636          310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIV----LSLLL  384 (403)
Q Consensus       310 i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~----~~~~~  384 (403)
                      |+|+|+|++.. ++.+|||+|+|+|++|+.|+|+|+||+++++|+|.|||+|++++|+||||+ ++|+||+    +.++.
T Consensus       224 i~l~g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~  302 (369)
T PRK14288        224 MVLKNKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA  302 (369)
T ss_pred             EEEccCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence            99999999865 567999999999999999999999999999999999999999999999997 7999986    23444


Q ss_pred             eeeeee
Q 015636          385 LLFYSL  390 (403)
Q Consensus       385 ~~~~~~  390 (403)
                      |.--++
T Consensus       303 i~g~G~  308 (369)
T PRK14288        303 FRNEGV  308 (369)
T ss_pred             EcCCCC
Confidence            444443

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.8e-65  Score=512.77  Aligned_cols=287  Identities=33%  Similarity=0.680  Sum_probs=247.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||++|+.+..... +..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~-~~~   81 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGA-GGF   81 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhcccc-CCC
Confidence            4699999999999999999999999999999999987788999999999999999999999999999876533110 000


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccc-----------cCCCCCCceEEEEEeeeccccCcceeccccce
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-----------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAF  229 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~-----------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~  229 (403)
                      ..+++      ..|..+|     +.|.++|+++|++.           ...++.|++++|.|||+|+|.|+++++.+.+.
T Consensus        82 ~~~~~------~~~~~~~-----~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~  150 (372)
T PRK14286         82 GQGAY------TDFSDIF-----GDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRL  150 (372)
T ss_pred             CCCCc------ccccccc-----cchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeecc
Confidence            00000      0111111     13456666666521           12468899999999999999999999999999


Q ss_pred             eecccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCC
Q 015636          230 VPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (403)
Q Consensus       230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~  305 (403)
                      +.|+.|+|+|........+|+.|+|+|.+...    +++.+|+.|.|+|++++++|..|+|.|++.+.++++|.||||++
T Consensus       151 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~  230 (372)
T PRK14286        151 ESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVE  230 (372)
T ss_pred             ccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCC
Confidence            99999999999888888999999999987543    24779999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcC
Q 015636          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIV  379 (403)
Q Consensus       306 ~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~  379 (403)
                      +|++|+|+|+|++...+..+|||||+|+|+||+.|+|+|+||+++++|+|.|||+|++++|+||||+ ++|+||.
T Consensus       231 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~  305 (372)
T PRK14286        231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPE  305 (372)
T ss_pred             CCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCC
Confidence            9999999999999876667899999999999999999999999999999999999999999999997 8999997

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6e-65  Score=507.75  Aligned_cols=288  Identities=38%  Similarity=0.699  Sum_probs=249.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||++|+.+....    .
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~----~   77 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGG----G   77 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccC----C
Confidence            369999999999999999999999999999999998888899999999999999999999999999987653211    0


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccc-------cCCCCCCceEEEEEeeeccccCcceeccccceeecc
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~-------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~  233 (403)
                      +++++.  ++.++|...    | ..|.++|+++|++.       ...++.|++++|.|||+|+|.|+++++.+.+.+.|+
T Consensus        78 ~~~~~~--~g~~~~~~~----~-~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~  150 (365)
T PRK14285         78 GFEGFS--GGFSGFSDI----F-EDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCE  150 (365)
T ss_pred             CccccC--CCccccccc----c-ccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCC
Confidence            001110  000111111    1 13557777777631       134788999999999999999999999999999999


Q ss_pred             cCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCCCE
Q 015636          234 SCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT  309 (403)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~  309 (403)
                      .|+|+|........+|+.|+|+|++...    +++.+|+.|.|.|+++.++|..|.|.|++.+.++++|.||||+++|++
T Consensus       151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~  230 (365)
T PRK14285        151 SCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQ  230 (365)
T ss_pred             CCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCE
Confidence            9999999888888999999999987643    357899999999999999999999999999999999999999999999


Q ss_pred             EEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcC
Q 015636          310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIV  379 (403)
Q Consensus       310 i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~  379 (403)
                      |+|+|+|++..++..+|||||+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||+ ++|+||.
T Consensus       231 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~  301 (365)
T PRK14285        231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPK  301 (365)
T ss_pred             EEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCC
Confidence            999999999876677899999999999999999999999999999999999999999999995 7899987

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.3e-64  Score=506.72  Aligned_cols=291  Identities=36%  Similarity=0.674  Sum_probs=246.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSA  159 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~  159 (403)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++ ++|+++|++|++||+||+||.+|+.||++|..+......+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~   82 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET   82 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence            46999999999999999999999999999999999864 67899999999999999999999999999865533110000


Q ss_pred             CCCCCCcccCCCCcceeccccccccch-hhhhhhhhccc--------cCCCCCCceEEEEEeeeccccCcceecccccee
Q 015636          160 GDAEGFRYAGDAEGFRYAYQTHFSDSF-HKIFSEIFEDE--------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFV  230 (403)
Q Consensus       160 ~~~~~~~~~~~~~~f~~~~~~~f~~~~-~~~F~~~f~~~--------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~  230 (403)
                      ...++|        |.++|.. |.+.| .++|+++|++.        ...+++|+++.|.|||+|+|+|+++++.+.+.+
T Consensus        83 ~~~g~~--------~~~~~~~-~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~  153 (369)
T PRK14282         83 ESGGGF--------FEDIFKD-FENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYE  153 (369)
T ss_pred             CCCCcc--------ccccccc-ccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecc
Confidence            000111        1111111 11111 24566666531        134688999999999999999999999999999


Q ss_pred             ecccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCC
Q 015636          231 PCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPA  302 (403)
Q Consensus       231 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~  302 (403)
                      .|+.|+|+|........+|+.|+|+|.+...        ..+.+|+.|.|.|++++++|..|.|.|++.+.++++|.|||
T Consensus       154 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  233 (369)
T PRK14282        154 TCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA  233 (369)
T ss_pred             cCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCC
Confidence            9999999999888888999999999987532        13679999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcCC
Q 015636          303 GVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIVL  380 (403)
Q Consensus       303 G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~~  380 (403)
                      |+++|++|+|+|+|++...+..+|||||+|+++||+.|+|+|+||+++++|+|.||++|++++|+|+||+ ++|+||++
T Consensus       234 G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g  312 (369)
T PRK14282        234 GVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG  312 (369)
T ss_pred             CCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC
Confidence            9999999999999998776778999999999999999999999999999999999999999999999996 79999964

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.3e-64  Score=509.08  Aligned_cols=295  Identities=40%  Similarity=0.771  Sum_probs=245.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||++|..+......+.+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~   83 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG   83 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence            46999999999999999999999999999999999987889999999999999999999999999998765432111110


Q ss_pred             CC--CCCcccCCCCcceeccccccccchhhhhhhhhccc------cCCCCCCceEEEEEeeeccccCcceeccccceeec
Q 015636          161 DA--EGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPC  232 (403)
Q Consensus       161 ~~--~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C  232 (403)
                      +.  +++.    ...|...+ ..|.+.|.++|+.+|++.      ...+++|+++.|.|||+|+|.|+++++.+.+.+.|
T Consensus        84 ~~~~~g~~----~~~~~~~~-~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C  158 (386)
T PRK14277         84 GFGQGGFG----GGGFDFDF-GGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKC  158 (386)
T ss_pred             CcCCCCcc----ccCccccc-cchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccC
Confidence            00  1110    00010000 111122333343333321      13468899999999999999999999999999999


Q ss_pred             ccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCC
Q 015636          233 DSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV  304 (403)
Q Consensus       233 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~  304 (403)
                      +.|+|+|........+|+.|+|+|.+...        ....+|+.|.|+|++++++|..|+|.|++.+.+.++|.||||+
T Consensus       159 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~  238 (386)
T PRK14277        159 DVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGI  238 (386)
T ss_pred             CCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCc
Confidence            99999999888888999999999987532        1256999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       305 ~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      ++|++|+|+|+|++...+..+|||||+|+|+||+.|+|+|+||+++++|+|.|||+|+++.|+||||+++|+||+.
T Consensus       239 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g  314 (386)
T PRK14277        239 DDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEG  314 (386)
T ss_pred             cCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCC
Confidence            9999999999999876666789999999999999999999999999999999999999999999999999999963

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-64  Score=510.34  Aligned_cols=296  Identities=35%  Similarity=0.671  Sum_probs=247.9

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCCC
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~~  161 (403)
                      .|||+||||+++||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||++|..+..... +...
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~-~~~~   79 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGA-GGFG   79 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccccccc-CCcC
Confidence            389999999999999999999999999999999998888999999999999999999999999999876532110 0000


Q ss_pred             CCCCcc-cCCCCcceeccccccccchhhhhhhhhcc-----------ccCCCCCCceEEEEEeeeccccCcceeccccce
Q 015636          162 AEGFRY-AGDAEGFRYAYQTHFSDSFHKIFSEIFED-----------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAF  229 (403)
Q Consensus       162 ~~~~~~-~~~~~~f~~~~~~~f~~~~~~~F~~~f~~-----------~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~  229 (403)
                      .++|.. .+....|..+|+..|+ .+.++|+++|++           ....++.|+++.|.|||||+|.|+++++.+.+.
T Consensus        80 ~~g~~~~~~~~~~~~~~f~~~~~-~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~  158 (391)
T PRK14284         80 GAGMGNMEDALRTFMGAFGGEFG-GGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGY  158 (391)
T ss_pred             CCCcCcccchhhhcccccccccc-ccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeee
Confidence            011110 0011122222221111 113556555542           112468899999999999999999999999999


Q ss_pred             eecccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCC
Q 015636          230 VPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (403)
Q Consensus       230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~  305 (403)
                      +.|+.|+|+|........+|+.|+|+|.+...    +++.+|+.|+|.|+++.++|..|.|.|++.+.++++|.||||++
T Consensus       159 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~  238 (391)
T PRK14284        159 KSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVD  238 (391)
T ss_pred             ccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCC
Confidence            99999999999888888999999999987533    24779999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCC--CcEEEEEcC
Q 015636          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLS--GKVQVKVIV  379 (403)
Q Consensus       306 ~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tld--G~~~l~ip~  379 (403)
                      +|++|+|+|+|++...++.+|||||+|+++||+.|+|+|+||+++++|+|.|||+|++++|+|||  +.++|+||.
T Consensus       239 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~  314 (391)
T PRK14284        239 SGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPE  314 (391)
T ss_pred             CCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECC
Confidence            99999999999998777889999999999999999999999999999999999999999999999  678899986

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.6e-65  Score=507.97  Aligned_cols=282  Identities=41%  Similarity=0.742  Sum_probs=245.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||++|..+.... ++  
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~-~~--   79 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQ-YS--   79 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccc-cC--
Confidence            369999999999999999999999999999999997 47788999999999999999999999999986543211 00  


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccc------cCCCCCCceEEEEEeeeccccCcceeccccceeeccc
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDS  234 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~  234 (403)
                      ..++|.   . ..        | ++|.++|+++|++.      ...++.|++++|.|||+|+|.|+++++.+.+.+.|+.
T Consensus        80 ~~~~~~---~-~~--------~-~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~  146 (377)
T PRK14298         80 AEDIFR---G-AD--------F-GGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCST  146 (377)
T ss_pred             cccccc---c-CC--------c-CcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCC
Confidence            000010   0 00        1 12345666666531      2357899999999999999999999999999999999


Q ss_pred             CCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCC
Q 015636          235 CHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS  306 (403)
Q Consensus       235 C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~  306 (403)
                      |+|+|...+....+|+.|+|+|.+...        +++.+|+.|.|.|+++.++|..|.|.|++.+.++++|.||||+++
T Consensus       147 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~  226 (377)
T PRK14298        147 CSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADS  226 (377)
T ss_pred             CCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCC
Confidence            999999988888999999999987432        247899999999999999999999999999999999999999999


Q ss_pred             CCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcC
Q 015636          307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIV  379 (403)
Q Consensus       307 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~  379 (403)
                      |++|+|+|+|++...+..+|||||+|+|+||+.|+|+|+||+++++|+|.|||+|++++|+||||+++|+||+
T Consensus       227 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~  299 (377)
T PRK14298        227 GLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPP  299 (377)
T ss_pred             CCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCC
Confidence            9999999999997667789999999999999999999999999999999999999999999999999999996

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-64  Score=507.17  Aligned_cols=299  Identities=36%  Similarity=0.700  Sum_probs=250.4

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhh----ccccCCccc
Q 015636           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDR----RRSRGSENE  155 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~----~~~~g~~~~  155 (403)
                      +..|||+||||+++|+.+|||+|||+||++||||+++++++|+++|++|++||+||+||.+|+.||+    +|+.|....
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~   86 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG   86 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence            3579999999999999999999999999999999998778899999999999999999999999999    776543211


Q ss_pred             cCCCCCCCCCcccCCCCcceeccc----cccccchhhhhhhhhcc----ccCCCCCCceEEEEEeeeccccCcceecccc
Q 015636          156 KYSAGDAEGFRYAGDAEGFRYAYQ----THFSDSFHKIFSEIFED----ETSHFAPDIQVELVLSFAEAAKGCTKHVSFD  227 (403)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~f~~~~~----~~f~~~~~~~F~~~f~~----~~~~~g~di~~~l~ltlee~~~G~~~~v~~~  227 (403)
                      . +.+..++|.+ +..+.|..+++    ..|++.|.++|+.+|++    ....+++|++++|.|||||+|.|+++++.+.
T Consensus        87 ~-~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~  164 (389)
T PRK14295         87 P-GGGGGGGFNF-DLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLT  164 (389)
T ss_pred             C-CCCCCCCCCc-ccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEee
Confidence            0 0000111211 01111211100    01222355667766653    1235789999999999999999999999999


Q ss_pred             ceeecccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCC
Q 015636          228 AFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAG  303 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G  303 (403)
                      +.+.|+.|+|+|........+|+.|+|+|.+...    .++.+|+.|.|+|++++++|..|.|.|++.+.++++|.||+|
T Consensus       165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G  244 (389)
T PRK14295        165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAG  244 (389)
T ss_pred             ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCC
Confidence            9999999999999988888999999999987543    247799999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCC-cEEEEEcCC
Q 015636          304 VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKVIVL  380 (403)
Q Consensus       304 ~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG-~~~l~ip~~  380 (403)
                      +++|++|+|+|+|++...+..+|||||+|+|+||+.|+|+|+||+++++|+|.|||+|++++|+|||| .++|+||++
T Consensus       245 ~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g  322 (389)
T PRK14295        245 VSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG  322 (389)
T ss_pred             CCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc
Confidence            99999999999999877677889999999999999999999999999999999999999999999999 589999973

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.4e-64  Score=503.35  Aligned_cols=280  Identities=39%  Similarity=0.752  Sum_probs=243.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||++|+.+.... .+. 
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~-~~~-   79 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQG-FGG-   79 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccc-cCC-
Confidence            469999999999999999999999999999999997 47789999999999999999999999999986553210 000 


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccc-------cCCCCCCceEEEEEeeeccccCcceeccccceeecc
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~-------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~  233 (403)
                        +++      ..|        + +|.++|+++|++.       ...++.|++++|.|||+|+|.|+++++.+.+.+.|+
T Consensus        80 --~~~------~~f--------~-~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~  142 (371)
T PRK14287         80 --GGA------GDF--------G-GFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCG  142 (371)
T ss_pred             --CCC------ccc--------c-chHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCC
Confidence              000      011        1 1345566666521       134789999999999999999999999999999999


Q ss_pred             cCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCC
Q 015636          234 SCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (403)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~  305 (403)
                      .|+|+|........+|+.|+|+|.+.+.        ..+.+|+.|.|+|++++.+|..|.|.|++.+.++++|.||||++
T Consensus       143 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~  222 (371)
T PRK14287        143 TCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGID  222 (371)
T ss_pred             CCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCC
Confidence            9999999887778899999999987532        13679999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       306 ~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +|++|+|+|+|++...+..+|||||+|+++||+.|+|+|+||++++.|+|.|||+|++++|+||||+++|+||++
T Consensus       223 ~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g  297 (371)
T PRK14287        223 HGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAG  297 (371)
T ss_pred             CCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCC
Confidence            999999999999976666889999999999999999999999999999999999999999999999999999963

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3e-64  Score=503.48  Aligned_cols=284  Identities=40%  Similarity=0.742  Sum_probs=247.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++|+.+|||+|||+||++||||+++++++|+++|++|++||+||+||.+|+.||++|+.|....     
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~-----   77 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGT-----   77 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCC-----
Confidence            469999999999999999999999999999999998878899999999999999999999999999987654211     


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhc-c-c-------cCCCCCCceEEEEEeeeccccCcceeccccceee
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFE-D-E-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~-~-~-------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~  231 (403)
                      .++++      ..|.++|     +.|.++|+++|+ + .       ...+++|++++|.|||+|+|.|+++++.+.+.+.
T Consensus        78 ~~~~~------~~~~~~~-----~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~  146 (366)
T PRK14294         78 GFSGF------SGFDDIF-----SSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLET  146 (366)
T ss_pred             CCCCc------Cccccch-----hhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeeccc
Confidence            01111      0121111     123455666665 1 1       1246889999999999999999999999999999


Q ss_pred             cccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCC
Q 015636          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSG  307 (403)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G  307 (403)
                      |+.|+|+|........+|+.|+|.|.+...    +++.+|+.|.|.|+++.+.|..|.|.|++.+.+.++|.||||+++|
T Consensus       147 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G  226 (366)
T PRK14294        147 CEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTG  226 (366)
T ss_pred             CCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCC
Confidence            999999999888888999999999987532    3578999999999999999999999999999999999999999999


Q ss_pred             CEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          308 DTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       308 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      ++|+|+|+|++...++.+|||||+|+++||+.|+|+|+||++++.|+|.|||+|++++|+||||+++|+||.+
T Consensus       227 ~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g  299 (366)
T PRK14294        227 SRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKG  299 (366)
T ss_pred             cEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCC
Confidence            9999999999877677899999999999999999999999999999999999999999999999999999963

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.9e-64  Score=503.94  Aligned_cols=288  Identities=40%  Similarity=0.729  Sum_probs=246.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||++|+.+..... +..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~-~~~   80 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGF-GGG   80 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCC-CCC
Confidence            4699999999999999999999999999999999984 77899999999999999999999999999876543210 000


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccc-------cCCCCCCceEEEEEeeeccccCcceeccccceeecc
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~-------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~  233 (403)
                       .+++      .+|..  ...| +.|.++|+++|++.       ...++.|+.+.|.|||+|+|.|+++++.+.+.+.|+
T Consensus        81 -~~~~------~~~~~--~~~~-~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~  150 (380)
T PRK14276         81 -AGGF------GGFDG--SGGF-GGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCH  150 (380)
T ss_pred             -CCCC------CCccc--cccc-cchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCC
Confidence             0000      01100  0011 12456777777631       134688999999999999999999999999999999


Q ss_pred             cCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCC
Q 015636          234 SCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (403)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~  305 (403)
                      .|+|+|........+|+.|+|+|.+.+.        ..+.+|+.|.|.|++++++|..|.|.|++.+.++++|.||||++
T Consensus       151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~  230 (380)
T PRK14276        151 TCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVE  230 (380)
T ss_pred             CCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence            9999999888888899999999987532        13679999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       306 ~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +|++|+|+|+|++...+..+|||+|+|+|+||+.|+|+|+||+++++|+|.|||+|++++|+||||+++|+||++
T Consensus       231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g  305 (380)
T PRK14276        231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAG  305 (380)
T ss_pred             CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCC
Confidence            999999999999976666789999999999999999999999999999999999999999999999999999963

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.8e-64  Score=503.33  Aligned_cols=285  Identities=42%  Similarity=0.766  Sum_probs=247.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||++|||+++||.+|||+|||+||++||||+++++++|+++|++|++||+||+||.+|+.||++|..|....    +
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~----~   78 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGN----G   78 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccC----C
Confidence            469999999999999999999999999999999998878899999999999999999999999999987653211    1


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhcc--------ccCCCCCCceEEEEEeeeccccCcceeccccceeec
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPC  232 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~--------~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C  232 (403)
                      .+++|.  +..++|         +.|.++|+++|+.        ....++.|+++.|.|||+|+|.|+++++.+.+.+.|
T Consensus        79 ~~~g~~--~~~~~~---------~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C  147 (373)
T PRK14301         79 GFGGFS--SAEDIF---------SHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTC  147 (373)
T ss_pred             CCCCcc--cccccc---------cchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccC
Confidence            111121  011111         1234556655541        113478899999999999999999999999999999


Q ss_pred             ccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCCC
Q 015636          233 DSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD  308 (403)
Q Consensus       233 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~  308 (403)
                      +.|+|+|........+|+.|+|+|.+...    +++.+|+.|+|.|+++.+.|..|+|.|++.+.++++|.||||+++|+
T Consensus       148 ~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  227 (373)
T PRK14301        148 DDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGS  227 (373)
T ss_pred             CCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCC
Confidence            99999999888888899999999987543    24789999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       309 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|++++|+||||+++|+||..
T Consensus       228 ~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g  299 (373)
T PRK14301        228 RLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKG  299 (373)
T ss_pred             EEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCC
Confidence            999999999877667799999999999999999999999999999999999999999999999999999973

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.5e-64  Score=502.42  Aligned_cols=285  Identities=42%  Similarity=0.759  Sum_probs=245.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||++|+.+..... +  
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~-~--   78 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGF-G--   78 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCc-C--
Confidence            3699999999999999999999999999999999974 67899999999999999999999999999866533110 0  


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccc-------cCCCCCCceEEEEEeeeccccCcceeccccceeecc
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~-------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~  233 (403)
                       ..++.    +..|..    .|  +|.++|+++|++.       ...++.|+.++|.|||+|+|.|+++++.+.+.+.|+
T Consensus        79 -~~~~~----~~~~~~----~~--~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~  147 (376)
T PRK14280         79 -GGGFG----GGDFGG----GF--GFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCD  147 (376)
T ss_pred             -CCCCC----CCCccc----cc--cchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCC
Confidence             00000    001110    01  2345666666521       124788999999999999999999999999999999


Q ss_pred             cCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCC
Q 015636          234 SCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (403)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~  305 (403)
                      .|+|+|........+|+.|+|+|.+...        .++.+|+.|.|+|+++..+|..|.|.|++.+.++++|.||+|++
T Consensus       148 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~  227 (376)
T PRK14280        148 TCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVD  227 (376)
T ss_pred             CCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCc
Confidence            9999999888888999999999987532        13679999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       306 ~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +|++|+|+|+|++...+..+|||||+|+|+||+.|+|+|+||+++++|+|.|||+|++++|+||||+++|+||+.
T Consensus       228 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g  302 (376)
T PRK14280        228 NGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAG  302 (376)
T ss_pred             CCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCC
Confidence            999999999999977667889999999999999999999999999999999999999999999999999999963

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.1e-64  Score=501.31  Aligned_cols=285  Identities=45%  Similarity=0.843  Sum_probs=247.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||++|..+..... +  
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~-~--   79 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGG-G--   79 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCC-C--
Confidence            4699999999999999999999999999999999987788999999999999999999999999999765532110 0  


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhcc------ccCCCCCCceEEEEEeeeccccCcceeccccceeeccc
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDS  234 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~------~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~  234 (403)
                       .+++.   +..+        |++.|.++|+.+|++      ....++.|++++|.|||||+|.|+++++.+.+.+.|+.
T Consensus        80 -~~~~~---~~~~--------~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~  147 (371)
T PRK10767         80 -GGGFG---GGGG--------FGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDT  147 (371)
T ss_pred             -CCCCC---Cccc--------cccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCC
Confidence             01110   0001        122244556665642      12357899999999999999999999999999999999


Q ss_pred             CCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCCCEE
Q 015636          235 CHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI  310 (403)
Q Consensus       235 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i  310 (403)
                      |+|+|.........|+.|+|+|.+...    +++.+|+.|.|.|+++.++|..|.|.|++.+.+.++|.||||+++|++|
T Consensus       148 C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i  227 (371)
T PRK10767        148 CHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRI  227 (371)
T ss_pred             CCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEE
Confidence            999999888888899999999987532    2477999999999999999999999999999999999999999999999


Q ss_pred             EEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       311 ~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +|+|+|++..++..+|||||+|+++||+.|+|+|+||++++.|+|.|||+|++++|+||||.++|+||++
T Consensus       228 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g  297 (371)
T PRK10767        228 RLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEG  297 (371)
T ss_pred             EEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCC
Confidence            9999999876667899999999999999999999999999999999999999999999999999999963

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9e-64  Score=502.35  Aligned_cols=288  Identities=39%  Similarity=0.732  Sum_probs=247.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||++|+.+.....  ..
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~--~~   80 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAG--GF   80 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccC--CC
Confidence            3699999999999999999999999999999999988788999999999999999999999999999876532110  00


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccc---------cCCCCCCceEEEEEeeeccccCcceeccccceee
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE---------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~---------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~  231 (403)
                      +.++|.      .|.  + ..+ .+|.++|+++|++.         ...+++|++++|.|||+|+|.|+++++.+.+.+.
T Consensus        81 ~~~~~~------~~~--~-~~~-~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~  150 (380)
T PRK14297         81 GSGGFG------GFD--F-SDM-GGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNEN  150 (380)
T ss_pred             CCCCCC------CcC--c-ccc-cchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeecc
Confidence            001110      010  0 001 12456666666521         1246889999999999999999999999999999


Q ss_pred             cccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCC
Q 015636          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAG  303 (403)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G  303 (403)
                      |+.|+|+|...+....+|+.|+|+|.+...        .++.+|+.|+|+|.++..+|..|+|.|++.+.++++|.||||
T Consensus       151 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G  230 (380)
T PRK14297        151 CETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAG  230 (380)
T ss_pred             CCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCC
Confidence            999999999888888999999999987532        247799999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          304 VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       304 ~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +++|++|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|++++|+||||+++|+||+.
T Consensus       231 ~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g  307 (380)
T PRK14297        231 VDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAG  307 (380)
T ss_pred             CCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCC
Confidence            99999999999999876667789999999999999999999999999999999999999999999999999999964

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-63  Score=500.48  Aligned_cols=279  Identities=37%  Similarity=0.671  Sum_probs=242.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCCC
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~~  161 (403)
                      .|||+||||+++|+.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||++|..+...   + ..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~---~-~~   77 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESA---G-GG   77 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccc---c-CC
Confidence            69999999999999999999999999999999998 5789999999999999999999999999997542110   0 00


Q ss_pred             CCCCcccCCCCcceeccccccccchhhhhhhhhccc--------cCCCCCCceEEEEEeeeccccCcceeccccceeecc
Q 015636          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE--------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (403)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~--------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~  233 (403)
                      .++|.     ..|         ++|.++|+++|++.        ...++.|+++.|.|||+|+|.|+++++.+.+.+.|+
T Consensus        78 ~~g~~-----~~f---------~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~  143 (378)
T PRK14278         78 GGGFG-----GGF---------GGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCD  143 (378)
T ss_pred             CCCCC-----cCc---------CchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCC
Confidence            01110     011         12345666666521        124688999999999999999999999999999999


Q ss_pred             cCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCC
Q 015636          234 SCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (403)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~  305 (403)
                      .|+|+|........+|+.|+|+|.+...        ..+.+|+.|+|.|+++.++|..|.|.|++.+.++++|.||||++
T Consensus       144 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~  223 (378)
T PRK14278        144 RCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVG  223 (378)
T ss_pred             CCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCC
Confidence            9999999888888999999999986432        13679999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCC-CCcEEEEEcC
Q 015636          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL-SGKVQVKVIV  379 (403)
Q Consensus       306 ~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tl-dG~~~l~ip~  379 (403)
                      +|++|+|+|+|++.+.+..+|||||+|+++||+.|+|+|+||+++++|+|.|||+|++++|+|| +|.++|+||+
T Consensus       224 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~  298 (378)
T PRK14278        224 DGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPP  298 (378)
T ss_pred             CCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCC
Confidence            9999999999998876677899999999999999999999999999999999999999999999 5668999996

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=7e-64  Score=505.86  Aligned_cols=285  Identities=28%  Similarity=0.469  Sum_probs=241.6

Q ss_pred             CCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCcc
Q 015636           75 GSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSEN  154 (403)
Q Consensus        75 ~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~  154 (403)
                      .+..+...|||+||||+++||.+|||+|||+||++||||+|++    .++|++|++||+||+||.+|+.||++|..+...
T Consensus        21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~   96 (421)
T PTZ00037         21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEG   96 (421)
T ss_pred             ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhccc
Confidence            3444556899999999999999999999999999999999863    489999999999999999999999997654321


Q ss_pred             ccCCCCCCCCCcccCCCCcceeccccccccchhhhhhhhhcc----ccCCCCCCceEEEEEeeeccccCcceecccccee
Q 015636          155 EKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED----ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFV  230 (403)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~----~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~  230 (403)
                      .         .   +. .            .+.++|+.+|++    ....+|.|+.+.|.|||+|+|.|+++++.+.+.+
T Consensus        97 ~---------~---~~-~------------d~~d~f~~~Fggg~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~  151 (421)
T PTZ00037         97 G---------E---QP-A------------DASDLFDLIFGGGRKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDV  151 (421)
T ss_pred             C---------C---CC-c------------chhhhHHHhhccccccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccc
Confidence            0         0   00 0            122344444542    1235689999999999999999999999999999


Q ss_pred             ecccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEee--eeeeEEeeceEEeceEEEEEEe
Q 015636          231 PCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIK--DHCMTCKGSGVVDGVKEVKVTI  300 (403)
Q Consensus       231 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~--~~C~~C~g~G~~~~~~~l~V~I  300 (403)
                      .|+.|+|+|.... ...+|+.|+|+|.+...        +++.+|+.|+|+|+++.  ++|..|.|.|++.+.+.++|.|
T Consensus       152 ~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~I  230 (421)
T PTZ00037        152 ICANCEGHGGPKD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNI  230 (421)
T ss_pred             cccccCCCCCCCC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEee
Confidence            9999999997544 57899999999975321        24679999999999985  8999999999999999999999


Q ss_pred             CCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcC
Q 015636          301 PAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIV  379 (403)
Q Consensus       301 p~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~  379 (403)
                      |||+++|++|+|+|+|++.+ ++.+|||||+|+++||+.|+|+|+||+++++|+|.|||+|++++|+||||+ +.|+||+
T Consensus       231 p~G~~dG~~I~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~  309 (421)
T PTZ00037        231 DKGVPNQHKITFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPP  309 (421)
T ss_pred             CCCCCCCcEEEEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCC
Confidence            99999999999999999865 578999999999999999999999999999999999999999999999997 7899886


Q ss_pred             C------Ceeeeeeeee
Q 015636          380 L------SLLLLLFYSL  390 (403)
Q Consensus       380 ~------~~~~~~~~~~  390 (403)
                      +      .++.|..-++
T Consensus       310 g~vt~pg~~~~I~geGm  326 (421)
T PTZ00037        310 GEVVKPGDIKVINNEGM  326 (421)
T ss_pred             CcccCCCcEEEeCCCCc
Confidence            4      3455554444

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.5e-63  Score=496.95  Aligned_cols=298  Identities=36%  Similarity=0.655  Sum_probs=241.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++|+.+|||+|||+||++||||+++++++|+++|++|++||++|+||.+|+.||++|..+....... .
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~-~   80 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAAS-G   80 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhcccccc-C
Confidence            369999999999999999999999999999999998878899999999999999999999999999987654321000 0


Q ss_pred             CCCCCccc--CCCCcc---eeccccc--cccchhhhhhhhhccc-------cCCCCCCceEEEEEeeeccccCcceeccc
Q 015636          161 DAEGFRYA--GDAEGF---RYAYQTH--FSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSF  226 (403)
Q Consensus       161 ~~~~~~~~--~~~~~f---~~~~~~~--f~~~~~~~F~~~f~~~-------~~~~g~di~~~l~ltlee~~~G~~~~v~~  226 (403)
                      ...+|...  +..+.|   ..||+..  ++.....-|...|++.       ...++.|+++.|.|||||+|.|+++++.+
T Consensus        81 ~~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~  160 (397)
T PRK14281         81 GGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKI  160 (397)
T ss_pred             CCCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEE
Confidence            00111000  001111   1222210  0000000011111111       11368899999999999999999999999


Q ss_pred             cceeecccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEE
Q 015636          227 DAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKV  298 (403)
Q Consensus       227 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V  298 (403)
                      .+.+.|+.|+|+|.... ...+|+.|+|.|.+...        ..+.+|+.|.|.|++++++|..|.|.|++.+.++++|
T Consensus       161 ~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V  239 (397)
T PRK14281        161 KKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKV  239 (397)
T ss_pred             EeeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEE
Confidence            99999999999999876 57899999999987532        1367999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEc
Q 015636          299 TIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVI  378 (403)
Q Consensus       299 ~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip  378 (403)
                      .||||+++|++|+|+|+|++...+..+|||||+|+++||+.|+|+|+||+++++|+|.|||+|++++|+||||+++|+||
T Consensus       240 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip  319 (397)
T PRK14281        240 TVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIP  319 (397)
T ss_pred             ecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeC
Confidence            99999999999999999999776678999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 015636          379 VL  380 (403)
Q Consensus       379 ~~  380 (403)
                      ++
T Consensus       320 ~g  321 (397)
T PRK14281        320 AG  321 (397)
T ss_pred             Cc
Confidence            63

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-62  Score=492.77  Aligned_cols=291  Identities=39%  Similarity=0.725  Sum_probs=241.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||++|||+++|+.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||.+|+.||++|..+.........
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~   80 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ   80 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence            3699999999999999999999999999999999985 778999999999999999999999999998755322110000


Q ss_pred             CCCCCc---ccCCCCcceeccccccccchhhhhhhhhcc-----------ccCCCCCCceEEEEEeeeccccCcceeccc
Q 015636          161 DAEGFR---YAGDAEGFRYAYQTHFSDSFHKIFSEIFED-----------ETSHFAPDIQVELVLSFAEAAKGCTKHVSF  226 (403)
Q Consensus       161 ~~~~~~---~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~-----------~~~~~g~di~~~l~ltlee~~~G~~~~v~~  226 (403)
                      ...+|.   ..+..+.|.+||+. |+      |+.+|+.           ....+++|+++.|.|||+|+|.|+++++.+
T Consensus        81 ~~~~~~~~~~~~~~d~f~~~f~~-fg------~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~  153 (382)
T PRK14291         81 GQEGFSDFGGGNIEDILEDVFDI-FG------FGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEV  153 (382)
T ss_pred             cccccccccCCCHHHHHHHHHHh-cc------ccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEE
Confidence            001111   00001112222110 10      0111221           112368899999999999999999999999


Q ss_pred             cceeecccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCC
Q 015636          227 DAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPA  302 (403)
Q Consensus       227 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~  302 (403)
                      .+.+.|+.|+|+|........+|+.|+|+|.+...    .++.+|+.|+|.|. ++++|..|.|.|++.+.++++|.|||
T Consensus       154 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~  232 (382)
T PRK14291        154 PRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPP  232 (382)
T ss_pred             eeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCC
Confidence            99999999999999888888999999999987543    24789999999995 78999999999999999999999999


Q ss_pred             CCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcCC
Q 015636          303 GVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIVL  380 (403)
Q Consensus       303 G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~~  380 (403)
                      |+++|++|+|+|+|++...++.+|||||+|+++||+.|+|+|+||+++++|+|.|||+|++++|+|+||+ ++|+||++
T Consensus       233 G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g  311 (382)
T PRK14291        233 GVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG  311 (382)
T ss_pred             CCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc
Confidence            9999999999999998776788999999999999999999999999999999999999999999999996 78999873

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.3e-62  Score=488.63  Aligned_cols=286  Identities=36%  Similarity=0.717  Sum_probs=244.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCCC
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~~  161 (403)
                      .|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||++|+||.+|+.||++|..+...... .+.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~-~~~   80 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQS-RGG   80 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccc-cCC
Confidence            69999999999999999999999999999999997 4678899999999999999999999999998655321100 000


Q ss_pred             CCCCcccCCCCcceeccccccccchhhhhhhhhccc-------cCCCCCCceEEEEEeeeccccCcceeccccceeeccc
Q 015636          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDS  234 (403)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~-------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~  234 (403)
                      .+++      ..|.    ..+++.|.++|+.+|++.       ...++.|+++.|.|||+|+|.|+++++.+.+.+.|+.
T Consensus        81 ~g~~------~~~~----~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~  150 (372)
T PRK14300         81 GGNH------GGFH----PDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDT  150 (372)
T ss_pred             CCCC------Cccc----cchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCC
Confidence            0000      0110    012223445555544421       1147889999999999999999999999999999999


Q ss_pred             CCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCCCEE
Q 015636          235 CHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI  310 (403)
Q Consensus       235 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i  310 (403)
                      |+|+|........+|+.|+|+|.+.+.    +++.+|+.|.|.|+++.++|..|+|.|++.+.+.++|.||||+++|++|
T Consensus       151 C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  230 (372)
T PRK14300        151 CHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI  230 (372)
T ss_pred             CCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence            999999888888999999999987543    2467999999999999999999999999999999999999999999999


Q ss_pred             EEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCC-cEEEEEcC
Q 015636          311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKVIV  379 (403)
Q Consensus       311 ~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG-~~~l~ip~  379 (403)
                      +++|+|++...+..+|||||+|+|+||+.|+|+|+||+++++|+|.+||+|+++.|+|||| .++|+||+
T Consensus       231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~  300 (372)
T PRK14300        231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPA  300 (372)
T ss_pred             EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECC
Confidence            9999999876677899999999999999999999999999999999999999999999998 68999986

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=6.6e-62  Score=485.39  Aligned_cols=285  Identities=45%  Similarity=0.800  Sum_probs=244.3

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCCCC
Q 015636           83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDA  162 (403)
Q Consensus        83 ~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~~~  162 (403)
                      |||++|||+++|+.+|||+|||+||++||||+++ +++++++|++|++||+||+||.+|+.||.+|..+......+  ..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~--~~   77 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGG--GG   77 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcC--CC
Confidence            7999999999999999999999999999999997 57788999999999999999999999999987654321100  00


Q ss_pred             CCCcccCCCCcceeccccccccchhhhhhhhhccc---------cCCCCCCceEEEEEeeeccccCcceeccccceeecc
Q 015636          163 EGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE---------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (403)
Q Consensus       163 ~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~---------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~  233 (403)
                      ++|.      +|   ..+.| +.+.++|+++|++.         ...+++|++++|.|||+|+|.|+++++.+.+.+.|+
T Consensus        78 ~~~~------~~---~~~~~-~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~  147 (354)
T TIGR02349        78 GGFN------GF---DIGFF-GDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCE  147 (354)
T ss_pred             CCcC------Cc---cccCc-CchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCC
Confidence            0110      00   00011 12445666666521         234788999999999999999999999999999999


Q ss_pred             cCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCC
Q 015636          234 SCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (403)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~  305 (403)
                      .|+|+|........+|+.|+|.|.+...        +.+.+|+.|.|+|++++.+|..|.|.|++.+.+.++|.||||++
T Consensus       148 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~  227 (354)
T TIGR02349       148 TCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVD  227 (354)
T ss_pred             CCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCC
Confidence            9999999888878999999999987532        13679999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       306 ~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +|++|+|+|+|++...+..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+||||.++|+||+.
T Consensus       228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g  302 (354)
T TIGR02349       228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAG  302 (354)
T ss_pred             CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCc
Confidence            999999999999876667789999999999999999999999999999999999999999999999989999863

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-61  Score=484.55  Aligned_cols=290  Identities=38%  Similarity=0.674  Sum_probs=244.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||++|||+++|+.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|+.||++|+.|....  +..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~--~~~   80 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGF--SQE   80 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccc--ccc
Confidence            5799999999999999999999999999999999984 7899999999999999999999999999987654311  000


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhh-hcc---ccCCCCCCceEEEEEeeeccccCcceeccccceeecccCC
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEI-FED---ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCH  236 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~-f~~---~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~  236 (403)
                        +.|...+..+.|..|+     .++.++|+.+ |++   ....++.|++++|.|||+|+|.|+++++.+.+.+.|+.|+
T Consensus        81 --~~~~~~~~~~~~~~~~-----~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~  153 (378)
T PRK14283         81 --DIFNNINFEDIFQGFG-----FGIGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCN  153 (378)
T ss_pred             --ccccccCccccccccc-----cchhhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCC
Confidence              0010000011121111     1223444443 432   1235788999999999999999999999999999999999


Q ss_pred             CccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCCC
Q 015636          237 GRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD  308 (403)
Q Consensus       237 G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~  308 (403)
                      |+|........+|+.|+|+|.+...        ..+.+|+.|.|.|+.+++.|..|.|.|++.+.+.++|.||||+++|+
T Consensus       154 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~  233 (378)
T PRK14283        154 GSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGS  233 (378)
T ss_pred             ccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCc
Confidence            9999888888999999999987532        12579999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       309 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||++++.|+|.+|++|++++|+||||.+.|+||.+
T Consensus       234 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g  305 (378)
T PRK14283        234 RLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAG  305 (378)
T ss_pred             EEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCC
Confidence            999999999976667899999999999999999999999999999999999999999999999889999863

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3e-61  Score=481.67  Aligned_cols=280  Identities=37%  Similarity=0.672  Sum_probs=236.9

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      .|||+||||+++|+.+|||+|||+||++||||++++++ +|+++|++|++||++|+||.+|+.||++|+.+...   +. 
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~---~~-   78 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGA---GG-   78 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccccc---CC-
Confidence            59999999999999999999999999999999998765 68899999999999999999999999998764321   00 


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhcc--------------ccCCCCCCceEEEEEeeeccccCcceeccc
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--------------ETSHFAPDIQVELVLSFAEAAKGCTKHVSF  226 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~--------------~~~~~g~di~~~l~ltlee~~~G~~~~v~~  226 (403)
                        .++..    ..|..     | ..+.++|+.+|++              ....++.|+++.|.|||+|+|.|+++++.+
T Consensus        79 --~~~~~----~~~~~-----~-~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~  146 (365)
T PRK14290         79 --SNFNW----DNFTH-----F-SDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKY  146 (365)
T ss_pred             --CCccc----ccccc-----c-cchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEe
Confidence              01100    00000     0 0112223333221              011247899999999999999999999999


Q ss_pred             cceeecccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEE
Q 015636          227 DAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKV  298 (403)
Q Consensus       227 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V  298 (403)
                      .+.+.|+.|+|+|.... ...+|+.|+|+|.+.+.        +++.+|+.|.|.|++++++|..|+|.|++.+.++++|
T Consensus       147 ~r~~~C~~C~G~g~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V  225 (365)
T PRK14290        147 RRNAMCPDCSGTGAKNG-KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISV  225 (365)
T ss_pred             eecccCCCCccccCCCC-CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEE
Confidence            99999999999998765 57899999999986532        1257999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEc
Q 015636          299 TIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVI  378 (403)
Q Consensus       299 ~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip  378 (403)
                      .||||+.+|++|+|+|+|+.  .++.+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|++++|+|++|.++|+||
T Consensus       226 ~Ip~G~~~G~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip  303 (365)
T PRK14290        226 KIPKGATDNLRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIP  303 (365)
T ss_pred             EECCCCCCCcEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEEC
Confidence            99999999999999999986  3678999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 015636          379 VL  380 (403)
Q Consensus       379 ~~  380 (403)
                      ++
T Consensus       304 ~g  305 (365)
T PRK14290        304 EG  305 (365)
T ss_pred             Cc
Confidence            73

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.1e-60  Score=479.05  Aligned_cols=297  Identities=36%  Similarity=0.630  Sum_probs=244.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||++|||+++|+.+|||+|||+||++||||+++++++|+++|++|++||++|+||.+|+.||++|..+..... +.+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~-~~~   82 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAA-GGG   82 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCC-CCC
Confidence            4699999999999999999999999999999999998888999999999999999999999999999876532110 000


Q ss_pred             CCCCCcccCCCCcceec---cccccccchhh--hhhhhhccccCCCCCCceEEEEEeeeccccCcceeccccceeecccC
Q 015636          161 DAEGFRYAGDAEGFRYA---YQTHFSDSFHK--IFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSC  235 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~---~~~~f~~~~~~--~F~~~f~~~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C  235 (403)
                      ++++.. .+..+.|..|   |+..|++ +..  .|..........++.|+++.|.|||+|+|.|+++++.+.+.+.|+.|
T Consensus        83 ~~~~~~-~~~~~~f~~f~~~fg~~~gg-~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C  160 (386)
T PRK14289         83 GFSGEG-MSMEDIFSMFGDIFGGHGGG-FGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC  160 (386)
T ss_pred             CCCCCC-cChhhhhHHhhhhhcccccC-cccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence            010000 0011122111   2111100 000  00000000113468899999999999999999999999999999999


Q ss_pred             CCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCC
Q 015636          236 HGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSG  307 (403)
Q Consensus       236 ~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G  307 (403)
                      +|+|........+|+.|+|+|.+++.        .++.+|+.|.|.|+++...|..|.|.|++.+.+.++|.||+|+++|
T Consensus       161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  240 (386)
T PRK14289        161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEG  240 (386)
T ss_pred             CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCC
Confidence            99999888888999999999987543        1367999999999999999999999999999999999999999999


Q ss_pred             CEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          308 DTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       308 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      ++|+|+|+|++...+..+|||+|+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+|+||+++|+||++
T Consensus       241 ~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g  313 (386)
T PRK14289        241 MQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAG  313 (386)
T ss_pred             CEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCc
Confidence            9999999999876677899999999999999999999999999999999999999999999999999999963

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-59  Score=471.66  Aligned_cols=279  Identities=39%  Similarity=0.723  Sum_probs=239.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCCC
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~~  161 (403)
                      .|||+||||+++|+.+|||+|||+||++||||++++ +.++++|++|++||+||+||.+|+.||.+|..+....    ..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~----~~   77 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGA----AG   77 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccC----CC
Confidence            599999999999999999999999999999999974 6788999999999999999999999999976543210    00


Q ss_pred             CCCCcccCCCCcceeccccccccchhhhhhhhhcc-------------ccCCCCCCceEEEEEeeeccccCcceeccccc
Q 015636          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDA  228 (403)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~-------------~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~  228 (403)
                      +.++.      .+         .+|.++|+++|++             ....++.|++++|.|||+|+|.|+++++.+.+
T Consensus        78 ~~~~~------~~---------~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r  142 (374)
T PRK14293         78 FPDMG------DM---------GGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPH  142 (374)
T ss_pred             cCCcc------cc---------cchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeec
Confidence            00000      00         0112333333321             11246789999999999999999999999999


Q ss_pred             eeecccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEe
Q 015636          229 FVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTI  300 (403)
Q Consensus       229 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~I  300 (403)
                      .+.|+.|+|+|........+|+.|+|+|.+...        ..+.+|+.|.|.|++++..|..|.|.|++.+.++++|.|
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I  222 (374)
T PRK14293        143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINI  222 (374)
T ss_pred             cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEe
Confidence            999999999999888888899999999987532        126799999999999999999999999999999999999


Q ss_pred             CCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          301 PAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       301 p~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      |||+++|++|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|++++|+||||+++|+||+.
T Consensus       223 ppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~  302 (374)
T PRK14293        223 PAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAG  302 (374)
T ss_pred             CCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCC
Confidence            99999999999999999876666789999999999999999999999999999999999999999999999989999863

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-58  Score=464.50  Aligned_cols=278  Identities=37%  Similarity=0.677  Sum_probs=237.2

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCCC
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~~  161 (403)
                      .|||++|||+++|+.+|||+|||+||++||||+++ +++|+++|++|++||+||+||.+|+.||++|..+...  .. + 
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~--~~-~-   76 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAG--MP-G-   76 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCccccc--cc-C-
Confidence            49999999999999999999999999999999997 4778999999999999999999999999998754211  00 0 


Q ss_pred             CCCCcccCCCCcceeccccccccchhhhhhhhhcc---------ccCCCCCCceEEEEEeeeccccCcceeccccceeec
Q 015636          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED---------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPC  232 (403)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~---------~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C  232 (403)
                      .         .+|..+   .|  .+.++|+.+|++         ....++.|+++.+.|||+|+|.|+++++.+.+.+.|
T Consensus        77 ~---------~~~~~~---~~--d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C  142 (371)
T PRK14292         77 G---------DPFGGM---GF--DPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTEC  142 (371)
T ss_pred             C---------cccCcc---CC--ChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecC
Confidence            0         011000   00  122444444442         113468899999999999999999999999999999


Q ss_pred             ccCCCccccCCCc-cccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCC
Q 015636          233 DSCHGRGFPADAK-TKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAG  303 (403)
Q Consensus       233 ~~C~G~G~~~~~~-~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G  303 (403)
                      +.|+|+|...... ..+|+.|+|+|.+...        ..+.+|+.|.|.|+.+...|..|.|.|++...+.++|.||+|
T Consensus       143 ~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G  222 (371)
T PRK14292        143 EHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRG  222 (371)
T ss_pred             CCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCC
Confidence            9999999876643 6899999999987532        126799999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          304 VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       304 ~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +++|++|+|+|+|++..++ . |||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+..|+||++
T Consensus       223 ~~~G~~i~~~G~G~~~~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g  297 (371)
T PRK14292        223 IDEGYRIRVAGMGNEGPGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPG  297 (371)
T ss_pred             CCCCcEEEEecCcCCCCCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCC
Confidence            9999999999999986544 3 9999999999999999999999999999999999999999999999988999874

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-55  Score=422.79  Aligned_cols=277  Identities=31%  Similarity=0.541  Sum_probs=237.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ...||+||||+++||.+|||+|||+||++||||+|++   +.++|++|++||||||||+||++||++|+.+......+  
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~--   77 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGG--   77 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCC--
Confidence            4589999999999999999999999999999999986   78999999999999999999999999987765332111  


Q ss_pred             CCCCCcccCCCCcceeccccccccchhhhhhhhhccccCCCCCCceEEEEEeeeccccCcceeccccceeecccCCCccc
Q 015636          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGF  240 (403)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~  240 (403)
                        +|+      ..|+.||+.  +         .++.+...+|+|+.+.+.|||+|+|.|.++++.++++.+|+.|+|.|.
T Consensus        78 --~g~------~~f~~~F~~--g---------~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGg  138 (337)
T KOG0712|consen   78 --GGF------GGFSQFFGF--G---------GNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGG  138 (337)
T ss_pred             --CCC------ccHHHhccC--C---------CcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCC
Confidence              111      115555441  0         112234556999999999999999999999999999999999999998


Q ss_pred             cCCCccccCCCccceeEEEe---------CCccccCCcCCCCcEE--eeeeeeEEeeceEEeceEEEEEEeCCCCCCCCE
Q 015636          241 PADAKTKICSTCRGIGRVTI---------PPFTSTCSTCKGLGRI--IKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT  309 (403)
Q Consensus       241 ~~~~~~~~C~~C~G~G~~~~---------~~~~~~C~~C~G~G~~--~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~  309 (403)
                      ...... .|+.|.|+|..+.         ++++..|..|+|.|.+  .++.|+.|.|.+++...+.++|.|++|++++++
T Consensus       139 ksg~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~k  217 (337)
T KOG0712|consen  139 KSGSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQK  217 (337)
T ss_pred             CCCCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccce
Confidence            766543 8999999997542         1357899999999998  579999999999999999999999999999999


Q ss_pred             EEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcCCCee
Q 015636          310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIVLSLL  383 (403)
Q Consensus       310 i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~~~~~  383 (403)
                      |.+.|+++..+ +..+||+++.|..++|+.|.|+|+||++..+|+|.|||+|+.+.+.||||+ +.|.++++.++
T Consensus       218 i~f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi  291 (337)
T KOG0712|consen  218 ITFKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVI  291 (337)
T ss_pred             eeeeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCcee
Confidence            99999999865 556999999999999999999999999999999999999999999999997 56666665543

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5e-46  Score=361.31  Aligned_cols=217  Identities=38%  Similarity=0.644  Sum_probs=174.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~  160 (403)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||++|+||.+|+.||++|..+......+..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~   81 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP   81 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence            469999999999999999999999999999999997 5778999999999999999999999999998764321100000


Q ss_pred             -CCCCCcccCCCCcceeccccccccchhhhhhhhhcc---------------ccCCCCCCceEEEEEeeeccccCcceec
Q 015636          161 -DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED---------------ETSHFAPDIQVELVLSFAEAAKGCTKHV  224 (403)
Q Consensus       161 -~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~---------------~~~~~g~di~~~l~ltlee~~~G~~~~v  224 (403)
                       ...++      ..|..+   .+ +.|.++|+++|++               ....+|.|+++.+.|||+|++.|+++.+
T Consensus        82 ~~~~~~------~~~~~~---~~-~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i  151 (291)
T PRK14299         82 PGPPGG------GDFSGF---NV-GDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVV  151 (291)
T ss_pred             CCCCCC------CCcccc---Cc-CCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEE
Confidence             00000      011000   00 1233444444432               1134688999999999999999999887


Q ss_pred             cccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCC
Q 015636          225 SFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV  304 (403)
Q Consensus       225 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~  304 (403)
                      .+.                                                                 .+.++|.||||+
T Consensus       152 ~l~-----------------------------------------------------------------g~~~~V~Ip~G~  166 (291)
T PRK14299        152 EVA-----------------------------------------------------------------GERLSVRIPPGV  166 (291)
T ss_pred             eeC-----------------------------------------------------------------CEEEEEecCCCc
Confidence            531                                                                 146789999999


Q ss_pred             CCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcC
Q 015636          305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIV  379 (403)
Q Consensus       305 ~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~  379 (403)
                      ++|++|+|+|+|++.      |||+|+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||+++|+||+
T Consensus       167 ~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~  235 (291)
T PRK14299        167 REGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPP  235 (291)
T ss_pred             CCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCC
Confidence            999999999999863      899999999999999999999999999999999999999999999999999996

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=4.7e-45  Score=356.99  Aligned_cols=234  Identities=30%  Similarity=0.570  Sum_probs=185.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCCC
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~~  161 (403)
                      .|||++|||+++|+.+|||+|||+||++||||+++. +.++++|++|++||++|+||.+|+.||.++..+... ..+...
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~-~~~~~~   81 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDP-QFNRQF   81 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCc-cccccc
Confidence            699999999999999999999999999999999874 678999999999999999999999999986432110 000000


Q ss_pred             CCCCcccCCCCcceeccccccccchhhhhhhhhccc-------cCCCCCCceEEEEEeeeccccCcceeccccceeeccc
Q 015636          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDS  234 (403)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~~-------~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~  234 (403)
                        ++   +.+..|.       ...|.++|+.+|+..       ...++.|+.+++.|+|+|++.|+.+.+.+.+.+    
T Consensus        82 --~~---~~~~~~~-------~~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----  145 (306)
T PRK10266         82 --QH---GDGQSFN-------AEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----  145 (306)
T ss_pred             --cc---CCCCCCC-------CCCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----
Confidence              00   0000110       112456666666531       123678999999999999999999998875532    


Q ss_pred             CCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcC
Q 015636          235 CHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPE  314 (403)
Q Consensus       235 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g  314 (403)
                      |.|                 .|.+                  .            ....+.++|.||+|+++|++|+|+|
T Consensus       146 ~~g-----------------~G~~------------------~------------~~~~~~~~V~Ip~G~~~G~~i~~~g  178 (306)
T PRK10266        146 YNA-----------------FGMI------------------E------------QEIPKTLNVKIPAGVGNGQRIRLKG  178 (306)
T ss_pred             ccC-----------------CCeE------------------E------------EeeeEEEEEEECCCCcCCcEEEEec
Confidence            222                 1211                  0            0123579999999999999999999


Q ss_pred             CccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          315 AGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       315 ~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +|++..++..+|||+|+|+++||+.|+|+|+||+++++|+|.+|++|++++|+|+||+++|+||.+
T Consensus       179 ~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g  244 (306)
T PRK10266        179 QGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPG  244 (306)
T ss_pred             CCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCC
Confidence            999976677889999999999999999999999999999999999999999999999999999974

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-40  Score=316.30  Aligned_cols=240  Identities=43%  Similarity=0.774  Sum_probs=205.2

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCCCC
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~~~  161 (403)
                      .|||+||||+++|+..|||+||++||++||||.|.+ ++|.++|++|.+|||||+|+.+|++||.++..+       ..+
T Consensus        43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~-------~~~  114 (288)
T KOG0715|consen   43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ-------HGE  114 (288)
T ss_pred             cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc-------ccc
Confidence            399999999999999999999999999999999986 489999999999999999999999999996543       000


Q ss_pred             CCCCcccCCCCcceeccccccccchhhhhhhhhcc-c-cCCCCCCceEEEEEeeeccccCcceeccccceeecccCCCcc
Q 015636          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-E-TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRG  239 (403)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~-~-~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G  239 (403)
                      +       .++++             +.|...|++ . ....+.++++.+.++|+++..|+.+.+.+.....|..|.|.|
T Consensus       115 ~-------~g~~~-------------~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~  174 (288)
T KOG0715|consen  115 F-------GGNPF-------------DVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSG  174 (288)
T ss_pred             c-------cCCcc-------------chHHHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccccCcC
Confidence            1       11222             122222222 1 123456888999999999999999999999999999999999


Q ss_pred             ccCCCccccCCCccceeEEEe---CCccc-cCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCC
Q 015636          240 FPADAKTKICSTCRGIGRVTI---PPFTS-TCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEA  315 (403)
Q Consensus       240 ~~~~~~~~~C~~C~G~G~~~~---~~~~~-~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~  315 (403)
                      ...+.....|..|.|.|.+..   .++.. +|..|.|.|.+..+.|..|.|.|.+...+.+.|.+|+|+.++.+|++++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~  254 (288)
T KOG0715|consen  175 AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGH  254 (288)
T ss_pred             cccccccccchhhhCcccccccccCCcceeecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecC
Confidence            999999999999999995533   23322 69999999999998899999999999999999999999999999999998


Q ss_pred             ccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhh
Q 015636          316 GNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQ  357 (403)
Q Consensus       316 G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~e  357 (403)
                      |..        ||+|.+.|.+++.|+|+|.|++++..|++++
T Consensus       255 ~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  255 GND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             Ccc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence            753        9999999999999999999999999998864

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-38  Score=299.81  Aligned_cols=263  Identities=30%  Similarity=0.432  Sum_probs=195.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCC
Q 015636           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSA  159 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~  159 (403)
                      ..+|||+||||+++|+..|||+|||+||++||||+|+++|.|.+.|++|+.||+|||||.+|+.||++|+.|......  
T Consensus        14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~--   91 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENK--   91 (336)
T ss_pred             cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccc--
Confidence            357999999999999999999999999999999999999999999999999999999999999999998877654210  


Q ss_pred             CCCCCCcccCC-CCcceeccccccccchhhhhhhhhccccCCCCCCceEEEEEeeeccccCcceeccccceeecccCCCc
Q 015636          160 GDAEGFRYAGD-AEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGR  238 (403)
Q Consensus       160 ~~~~~~~~~~~-~~~f~~~~~~~f~~~~~~~F~~~f~~~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~  238 (403)
                       ...+   .++ .++|+.+|+.. +-    .++.....+...+|.++...+..+++++|.|........+.+.|+. .|+
T Consensus        92 -~~~~---g~~~~~~f~~~f~df-g~----~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~  161 (336)
T KOG0713|consen   92 -DGEG---GGGGNDIFSAFFGDF-GV----TVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGT  161 (336)
T ss_pred             -cccc---CCcccchHHHhhccc-cc----ccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Ccc
Confidence             0000   111 24565555421 10    1111112234577899999999999999999877766655555432 111


Q ss_pred             cccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEe-eeeeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCcc
Q 015636          239 GFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRII-KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGN  317 (403)
Q Consensus       239 G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~-~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~  317 (403)
                      -. ...+..-                ..+..+.|....+ ...|.+|.+.+.......+++.+..|+..|....+..+|.
T Consensus       162 ~~-~~~~~~~----------------~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  224 (336)
T KOG0713|consen  162 RK-CNCRLEM----------------FTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGE  224 (336)
T ss_pred             cc-cCChhhh----------------eeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCC
Confidence            10 0011111                1112222222221 3455555556666778899999999999999999999998


Q ss_pred             CCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc
Q 015636          318 AGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK  372 (403)
Q Consensus       318 ~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~  372 (403)
                      +.. -+.+||+++.+..-+|+.|.|+++||++++.|++.+++.|+..++.++|+.
T Consensus       225 ~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~  278 (336)
T KOG0713|consen  225 PHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGH  278 (336)
T ss_pred             cce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchh
Confidence            864 457999999999999999999999999999999999999999999999985

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=100.00  E-value=4.2e-32  Score=281.36  Aligned_cols=134  Identities=14%  Similarity=0.119  Sum_probs=113.3

Q ss_pred             CceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeE
Q 015636          204 DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMT  283 (403)
Q Consensus       204 di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~  283 (403)
                      +|++++.|+|+++|.||++++++.|.+.|    |.|.                                           
T Consensus       658 dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G~-------------------------------------------  690 (871)
T TIGR03835       658 NLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNTE-------------------------------------------  690 (871)
T ss_pred             ceEEecccCHHHHhCCCeEEEEEEEeecc----CCCc-------------------------------------------
Confidence            56888999999999999999999877654    2221                                           


Q ss_pred             EeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCe
Q 015636          284 CKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGK  363 (403)
Q Consensus       284 C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~  363 (403)
                          ..+.+.+.++|.||+|+++|++|+|+|+|+...+ + .|||||+|+++||+.|+|+|+||++++.|+|.+||+|++
T Consensus       691 ----ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgt  764 (871)
T TIGR03835       691 ----STTNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGI  764 (871)
T ss_pred             ----ceeeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCE
Confidence                0124567899999999999999999999998643 3 499999999999999999999999999999999999999


Q ss_pred             EEeeCCCCcEEEEEcC----CCeeeeeeeee
Q 015636          364 VDVPTLSGKVQVKVIV----LSLLLLLFYSL  390 (403)
Q Consensus       364 ~~I~tldG~~~l~ip~----~~~~~~~~~~~  390 (403)
                      +.|+||||++.|+||.    +.++-|-.-++
T Consensus       765 IeIpTLDGrVkLkIPpgTqpGqvLRIkGKGM  795 (871)
T TIGR03835       765 IDVFGPNKLFNVRIPGGIKVNDQVIFKDLGL  795 (871)
T ss_pred             EEeeCCCCCEEEeeCCCCCCCcEEEECCCCC
Confidence            9999999998999986    34555555554

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=2.1e-20  Score=180.37  Aligned_cols=247  Identities=28%  Similarity=0.449  Sum_probs=158.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSA  159 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~~  159 (403)
                      ..|||++|+|.++|+.+||++||+++|++||||+++.. ..++++|++|.+||++|+||.+|..||.++..+........
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~   81 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS   81 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence            46999999999999999999999999999999998865 23556899999999999999999999999874433211000


Q ss_pred             CC-CCC---CcccCCCCcceeccccc--cccc------------------hhhhhhhhhcc-----------ccCCCCCC
Q 015636          160 GD-AEG---FRYAGDAEGFRYAYQTH--FSDS------------------FHKIFSEIFED-----------ETSHFAPD  204 (403)
Q Consensus       160 ~~-~~~---~~~~~~~~~f~~~~~~~--f~~~------------------~~~~F~~~f~~-----------~~~~~g~d  204 (403)
                      .. ..+   +......+.|.++|+..  +...                  +...+....+.           ........
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (306)
T KOG0714|consen   82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP  161 (306)
T ss_pred             CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence            00 000   11111122233333310  0000                  00000000000           00011112


Q ss_pred             ceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEE
Q 015636          205 IQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTC  284 (403)
Q Consensus       205 i~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C  284 (403)
                      +...+.+++++.+.|+.+...+.+...                                               ..... 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~-  193 (306)
T KOG0714|consen  162 VEHPLRVSLEDLYKGESKKMKISRQSF-----------------------------------------------TSNGR-  193 (306)
T ss_pred             ccCCcceeHHHhccccceeeecccccc-----------------------------------------------cCCcc-
Confidence            233333355555555444444322110                                               00000 


Q ss_pred             eeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEE--eecCHhhhhcCC
Q 015636          285 KGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVD--SNISFTQAILGG  362 (403)
Q Consensus       285 ~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~--~~Isl~eAllG~  362 (403)
                         ........+.+.+++++..|+.+....+|..... ..+-++++.+..++|+.|.+.++||...  ..|++.+|++|.
T Consensus       194 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~  269 (306)
T KOG0714|consen  194 ---EGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGV  269 (306)
T ss_pred             ---cccCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCc
Confidence               0013456788999999999999999999987543 5677888889999999999999999999  999999999999


Q ss_pred             eEEeeCCCCcEEEEEcCC
Q 015636          363 KVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       363 ~~~I~tldG~~~l~ip~~  380 (403)
                      ...+++++|. .+.++..
T Consensus       270 ~~~~~~~~~~-~~~~~~~  286 (306)
T KOG0714|consen  270 TVFVPTLDGR-SYSLSIN  286 (306)
T ss_pred             ceeeecccCc-cccCccc
Confidence            9999999986 3455544

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.2e-19  Score=168.80  Aligned_cols=72  Identities=49%  Similarity=0.808  Sum_probs=68.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~  152 (403)
                      ..|+|+||||+++|+.++||||||+||++||||+++++|++.++|++||+||++|+||.+|..||.+|+.|.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l  101 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL  101 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence            569999999999999999999999999999999999999999999999999999999999999999976654

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.1e-18  Score=171.55  Aligned_cols=138  Identities=27%  Similarity=0.569  Sum_probs=112.3

Q ss_pred             eEEEEEeeeccccCcceec--cccceeecccCCCccccCCCc-------cccCCCccceeEEEeCCccccCCcCCCCcEE
Q 015636          206 QVELVLSFAEAAKGCTKHV--SFDAFVPCDSCHGRGFPADAK-------TKICSTCRGIGRVTIPPFTSTCSTCKGLGRI  276 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v--~~~~~~~C~~C~G~G~~~~~~-------~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~  276 (403)
                      +.+|.++-...+.-|.-.-  .-...+.|++|+|+|.....+       +++|+.|+|+|++    +..+|..|+|.|++
T Consensus       134 ~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~----i~~pC~~C~G~G~v  209 (371)
T COG0484         134 KKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKI----IKDPCGKCKGKGRV  209 (371)
T ss_pred             eeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeE----CCCCCCCCCCCCeE
Confidence            4556666666555444332  223578999999999754333       6799999999999    78999999999999


Q ss_pred             eeeeeeEEeec-eEEeceE-------------------------------------------------------------
Q 015636          277 IKDHCMTCKGS-GVVDGVK-------------------------------------------------------------  294 (403)
Q Consensus       277 ~~~~C~~C~g~-G~~~~~~-------------------------------------------------------------  294 (403)
                      .+.+-.+++++ |+.++++                                                             
T Consensus       210 ~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~  289 (371)
T COG0484         210 KKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLD  289 (371)
T ss_pred             eeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecC
Confidence            99999999998 8888877                                                             


Q ss_pred             -EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeE
Q 015636          295 -EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADV  347 (403)
Q Consensus       295 -~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL  347 (403)
                       .++|.||||+++|++++|+|+|++...+...|||||+|+|+-+..+..+...|
T Consensus       290 g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~l  343 (371)
T COG0484         290 GRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKEL  343 (371)
T ss_pred             CCEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHH
Confidence             67899999999999999999999987777789999999999887765554443

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=6.7e-18  Score=155.87  Aligned_cols=68  Identities=56%  Similarity=0.903  Sum_probs=64.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 015636           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRDSEKRAQYDRR  147 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~dp~~R~~yd~~  147 (403)
                      ...+||+||||+++|+..||++|||++|++||||+++.++. ++++|+.|++||++|+|+.+|+.||..
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            44699999999999999999999999999999999998885 999999999999999999999999986

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2e-18  Score=165.93  Aligned_cols=74  Identities=51%  Similarity=0.834  Sum_probs=69.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCcc
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSEN  154 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~  154 (403)
                      ..|||++|||+.+|+..||++|||+.|++||||+||+||.|.++|+.+.+||+||+|+.+|+.||.++..+...
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~   77 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA   77 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence            46999999999999999999999999999999999999999999999999999999999999999998665443

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.73  E-value=4.5e-18  Score=128.05  Aligned_cols=63  Identities=54%  Similarity=0.979  Sum_probs=59.9

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhh
Q 015636           83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYD  145 (403)
Q Consensus        83 ~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~dp~~R~~yd  145 (403)
                      |||+||||+++++.++||++|+++++++|||+++.+. .+.+.|+.|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999998765 58899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=4.4e-18  Score=168.02  Aligned_cols=77  Identities=40%  Similarity=0.708  Sum_probs=69.4

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENE  155 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~  155 (403)
                      ..+.|||.+|+|+++||.+|||+|||++++.||||+..+..   .|++.|+.|.+||||||||.+|++||.+|++|....
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~   85 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTE   85 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccccc
Confidence            34569999999999999999999999999999999997422   389999999999999999999999999999987743

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.71  E-value=6.3e-18  Score=180.04  Aligned_cols=74  Identities=31%  Similarity=0.508  Sum_probs=68.1

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~  153 (403)
                      ....+||+||||+++|+..|||+|||+||++||||+++++ .|.++|++|++||+|||||.+|+.||++|..|..
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            3467999999999999999999999999999999999874 6888999999999999999999999999876643

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=4.8e-17  Score=160.69  Aligned_cols=71  Identities=49%  Similarity=0.733  Sum_probs=65.7

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      .+.+.||+||||.++|+..|||++||+||++||||+|+..- +|.++|+.|+.||+|||||..|+-||.+..
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            45679999999999999999999999999999999987653 589999999999999999999999999876

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.2e-16  Score=145.42  Aligned_cols=70  Identities=49%  Similarity=0.797  Sum_probs=64.3

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANK--NNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~--~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      ...|+|+||||.++|+..+|++||++||+++|||+++  .+.++.++|++++.||.||+|..+|+.||..|.
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~   83 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS   83 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            3459999999999999999999999999999999994  345689999999999999999999999999864

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.64  E-value=3.3e-16  Score=116.15  Aligned_cols=59  Identities=58%  Similarity=0.901  Sum_probs=54.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChhHHHHHHHHHHHHHHhhhhhh
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN-NPSAKRKFQEIRDAYETLRDSEK  140 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~-~~~a~~~f~~i~~Ay~vL~dp~~  140 (403)
                      .|||+||||+++++.++||++|+++++++|||++++ .+.+.+.|++|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            389999999999999999999999999999999986 56788999999999999999853

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=7.8e-16  Score=154.62  Aligned_cols=141  Identities=25%  Similarity=0.469  Sum_probs=110.8

Q ss_pred             eEEEEEeeeccccCcceecc--ccceeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCCc
Q 015636          206 QVELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLG  274 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G  274 (403)
                      ..++.++-...+..|...-.  -.....|+.|+|+|.....         ...+|+.|+|.|.+    +...|..|.|.|
T Consensus       144 ~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g  219 (369)
T PRK14282        144 EIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKI----PGEYCHECGGSG  219 (369)
T ss_pred             EEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCccee----CCCCCCCCCCce
Confidence            34555555555544433222  2345789999999975321         25689999999998    678899999999


Q ss_pred             EEeeeeeeEEeec-eEEeceE-----------------------------------------------------------
Q 015636          275 RIIKDHCMTCKGS-GVVDGVK-----------------------------------------------------------  294 (403)
Q Consensus       275 ~~~~~~C~~C~g~-G~~~~~~-----------------------------------------------------------  294 (403)
                      .+.+..-.++.++ |+.++++                                                           
T Consensus       220 ~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~  299 (369)
T PRK14282        220 RIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPL  299 (369)
T ss_pred             eEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeC
Confidence            9988888888877 7776665                                                           


Q ss_pred             ----EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEE
Q 015636          295 ----EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVD  350 (403)
Q Consensus       295 ----~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~  350 (403)
                          .++|.||+|+++|++++|+|+|++...+..+|||||+|+|+.|+.|++++.+|+.+
T Consensus       300 ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~  359 (369)
T PRK14282        300 PEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE  359 (369)
T ss_pred             CCCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence                58999999999999999999999865445689999999999999999999887654

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=1.5e-15  Score=152.34  Aligned_cols=141  Identities=21%  Similarity=0.501  Sum_probs=111.1

Q ss_pred             EEEEEeeeccccCcceecc-ccceeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCCcEE
Q 015636          207 VELVLSFAEAAKGCTKHVS-FDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRI  276 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~-~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~  276 (403)
                      .++.+.....+..|...-. ......|+.|+|+|.....         ...+|+.|+|.|.+    ++..|..|.|+|.+
T Consensus       142 ~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v  217 (365)
T PRK14290        142 KRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI----PEEKCPRCNGTGTV  217 (365)
T ss_pred             EEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE----ccCCCCCCCCceeE
Confidence            3445554544433322221 1245789999999964321         24689999999998    68899999999999


Q ss_pred             eeeeeeEEeec-eEEeceE------------------------------------------------------------E
Q 015636          277 IKDHCMTCKGS-GVVDGVK------------------------------------------------------------E  295 (403)
Q Consensus       277 ~~~~C~~C~g~-G~~~~~~------------------------------------------------------------~  295 (403)
                      .+..-.++.++ |+.++++                                                            .
T Consensus       218 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~  297 (365)
T PRK14290        218 VVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK  297 (365)
T ss_pred             EEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce
Confidence            99888888887 8877766                                                            6


Q ss_pred             EEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEe
Q 015636          296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDS  351 (403)
Q Consensus       296 l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~  351 (403)
                      ++|.||+|+++|++|+|+|+|++...+..+|||||+|+|+.|+.|++++.+|+.++
T Consensus       298 i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~  353 (365)
T PRK14290        298 YNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF  353 (365)
T ss_pred             EEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999999998765556899999999999999999998887653

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.61  E-value=1.2e-15  Score=110.91  Aligned_cols=55  Identities=56%  Similarity=0.985  Sum_probs=51.8

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhh
Q 015636           83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRD  137 (403)
Q Consensus        83 ~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d  137 (403)
                      |||++|||+++++.++||++|++|++++|||++++.+.+.+.|++|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999998656788999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PHA03102 Small T antigen; Reviewed

Probab=99.60  E-value=6.9e-16  Score=134.94  Aligned_cols=66  Identities=24%  Similarity=0.466  Sum_probs=60.6

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           82 RDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        82 ~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      ..+|+||||+++|  |.+|||+|||++|+++|||++++    .++|++|++||++|+|+.+|..||.+|...
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            4689999999999  99999999999999999999864    479999999999999999999999997543

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1.5e-15  Score=152.76  Aligned_cols=142  Identities=25%  Similarity=0.504  Sum_probs=109.8

Q ss_pred             eEEEEEeeeccccCcceecc--ccceeecccCCCccccCC---------CccccCCCccceeEEEeCCccccCCcCCCCc
Q 015636          206 QVELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLG  274 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G  274 (403)
                      ..++.++....+..|...-.  -.....|+.|+|+|....         ..+.+|+.|+|+|.+    +..+|+.|.|+|
T Consensus       133 ~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g  208 (377)
T PRK14298        133 RKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV----IESPCPVCSGTG  208 (377)
T ss_pred             EEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc----cCCCCCCCCCcc
Confidence            34455555555543333222  123468999999996532         125789999999998    678899999999


Q ss_pred             EEeeeeeeEEeec-eEEeceE-----------------------------------------------------------
Q 015636          275 RIIKDHCMTCKGS-GVVDGVK-----------------------------------------------------------  294 (403)
Q Consensus       275 ~~~~~~C~~C~g~-G~~~~~~-----------------------------------------------------------  294 (403)
                      .+.+.+-.++.++ |+.++++                                                           
T Consensus       209 ~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~t  288 (377)
T PRK14298        209 KVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPT  288 (377)
T ss_pred             EEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEec
Confidence            9988888888876 7776665                                                           


Q ss_pred             ---EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEe
Q 015636          295 ---EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDS  351 (403)
Q Consensus       295 ---~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~  351 (403)
                         .++|.||+|+++|++++|+|+|++...+..+|||||+|+|+.++.+++++.+|+.++
T Consensus       289 ldG~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l  348 (377)
T PRK14298        289 LYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF  348 (377)
T ss_pred             CCCCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence               578999999999999999999998765556899999999999999999887776553

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=2.1e-15  Score=151.36  Aligned_cols=120  Identities=28%  Similarity=0.584  Sum_probs=100.8

Q ss_pred             ceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeec-eEEeceE-------
Q 015636          228 AFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK-------  294 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~-------  294 (403)
                      ....|+.|+|+|....     ..+.+|+.|+|.|+.    +...|..|.|.|.+.+..-.++.++ |+..+++       
T Consensus       160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G  235 (366)
T PRK14294        160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKV----IVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEG  235 (366)
T ss_pred             CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCee----cCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCc
Confidence            3578999999997532     136799999999998    6789999999999988777787776 7776665       


Q ss_pred             -------------------------------------------------------EEEEEeCCCCCCCCEEEEcCCccCC
Q 015636          295 -------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAGNAG  319 (403)
Q Consensus       295 -------------------------------------------------------~l~V~Ip~G~~~G~~i~l~g~G~~~  319 (403)
                                                                             .++|.||+|+++|++|+|+|+|++.
T Consensus       236 ~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~  315 (366)
T PRK14294        236 EAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPS  315 (366)
T ss_pred             cCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCC
Confidence                                                                   4689999999999999999999987


Q ss_pred             CCCCCcccEEEEEEEEcCCCceeeCCeEEEEe
Q 015636          320 GRGRQHGNLFIKLKVADDPIFSRDGADVYVDS  351 (403)
Q Consensus       320 ~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~  351 (403)
                      ..+..+|||||+|+|..|+.|++++.+|+..+
T Consensus       316 ~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~  347 (366)
T PRK14294        316 LRGGGRGDQIIEVEVKVPTRLTKKQEELLTEF  347 (366)
T ss_pred             CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            65556899999999999999999887776553

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=3.7e-15  Score=149.41  Aligned_cols=139  Identities=22%  Similarity=0.464  Sum_probs=107.8

Q ss_pred             eEEEEEeeeccccCcceecc--ccceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEee
Q 015636          206 QVELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (403)
                      ..++.++....+..|.-.-.  -.....|+.|+|+|....     ..+.+|+.|+|.|.+    +..+|..|.|+|.+.+
T Consensus       138 ~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~  213 (365)
T PRK14285        138 KNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKI----ISNPCKSCKGKGSLKK  213 (365)
T ss_pred             EEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccc----cCCCCCCCCCCCEEec
Confidence            34455555555444433322  233568999999996432     236789999999998    6789999999999988


Q ss_pred             eeeeEEeec-eEEeceE---------------------------------------------------------------
Q 015636          279 DHCMTCKGS-GVVDGVK---------------------------------------------------------------  294 (403)
Q Consensus       279 ~~C~~C~g~-G~~~~~~---------------------------------------------------------------  294 (403)
                      .+-.++.++ |+.++++                                                               
T Consensus       214 ~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~  293 (365)
T PRK14285        214 KETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASK  293 (365)
T ss_pred             cEEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCC
Confidence            888888877 7776665                                                               


Q ss_pred             EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEE
Q 015636          295 EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY  348 (403)
Q Consensus       295 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~  348 (403)
                      .++|.||+|+++|++++|+|+|++...+...|||||+|+|+.|+.|++++..|+
T Consensus       294 ~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l  347 (365)
T PRK14285        294 KIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLL  347 (365)
T ss_pred             EEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            689999999999999999999998765555799999999999999988885543

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=2e-15  Score=136.36  Aligned_cols=71  Identities=37%  Similarity=0.665  Sum_probs=64.9

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      ....|||+||||+++|+..|||+|||+|++++|||+++...+.++.|..|++||+.|+|+..|+.|..+|.
T Consensus        96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~  166 (230)
T KOG0721|consen   96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN  166 (230)
T ss_pred             hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence            34579999999999999999999999999999999998655677889999999999999999999999964

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=4e-15  Score=149.73  Aligned_cols=141  Identities=24%  Similarity=0.501  Sum_probs=108.8

Q ss_pred             EEEEEeeeccccCcceecc--ccceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      .++.++-...+..|...-.  -.....|+.|+|+|....     ....+|+.|+|.|..    +...|..|.|+|.+.+.
T Consensus       135 ~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~  210 (371)
T PRK10767        135 KEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKI----IKDPCKKCHGQGRVEKE  210 (371)
T ss_pred             EEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeE----CCCCCCCCCCCceEeee
Confidence            4455555555544433222  223468999999996431     235689999999998    67889999999999888


Q ss_pred             eeeEEeec-eEEeceE--------------------------------------------------------------EE
Q 015636          280 HCMTCKGS-GVVDGVK--------------------------------------------------------------EV  296 (403)
Q Consensus       280 ~C~~C~g~-G~~~~~~--------------------------------------------------------------~l  296 (403)
                      ...++.++ |+..+++                                                              .+
T Consensus       211 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i  290 (371)
T PRK10767        211 KTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRV  290 (371)
T ss_pred             eeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcE
Confidence            88887776 6655544                                                              57


Q ss_pred             EEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEe
Q 015636          297 KVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDS  351 (403)
Q Consensus       297 ~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~  351 (403)
                      +|.||+|+++|++++|+|+|++...+..+|||||+|+|+.++.|++++.+|+.++
T Consensus       291 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l  345 (371)
T PRK10767        291 KLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF  345 (371)
T ss_pred             EEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            8999999999999999999998765567899999999999999999998876553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.58  E-value=2.7e-15  Score=144.13  Aligned_cols=69  Identities=48%  Similarity=0.747  Sum_probs=63.9

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRDSEKRAQYDRR  147 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~---a~~~f~~i~~Ay~vL~dp~~R~~yd~~  147 (403)
                      +..+|||+||||.++|+..||.||||++|.+||||...+..+   |+++|..|..|-|||+||++|+.+|..
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence            456899999999999999999999999999999999986442   889999999999999999999999985

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=6.4e-15  Score=148.13  Aligned_cols=139  Identities=25%  Similarity=0.480  Sum_probs=106.2

Q ss_pred             eEEEEEeeeccccCcceecc--ccceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEee
Q 015636          206 QVELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (403)
                      ..++.++....+..|.-.-.  -.....|+.|+|+|....     ....+|+.|+|.|++    +...|..|.|.|.+.+
T Consensus       136 ~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~  211 (373)
T PRK14301        136 EVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRV----ITHPCPKCKGSGIVQQ  211 (373)
T ss_pred             eEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeee----cCCCCCCCCCCceecc
Confidence            34555555555544443322  233468999999997532     226789999999998    6788999999999988


Q ss_pred             eeeeEEeec-eEEeceE--------------------------------------------------------------E
Q 015636          279 DHCMTCKGS-GVVDGVK--------------------------------------------------------------E  295 (403)
Q Consensus       279 ~~C~~C~g~-G~~~~~~--------------------------------------------------------------~  295 (403)
                      ..-.++.++ |+..+++                                                              .
T Consensus       212 ~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~  291 (373)
T PRK14301        212 TRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP  291 (373)
T ss_pred             ceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc
Confidence            777788776 7666655                                                              5


Q ss_pred             EEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEE
Q 015636          296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY  348 (403)
Q Consensus       296 l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~  348 (403)
                      ++|.||+|+++|++++|+|+|++...+..+|||||+|+|..|+.+..+..+|+
T Consensus       292 i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l  344 (373)
T PRK14301        292 VTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELL  344 (373)
T ss_pred             EEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            78999999999999999999999765556899999999998887766654443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=1.6e-14  Score=145.09  Aligned_cols=114  Identities=24%  Similarity=0.513  Sum_probs=94.9

Q ss_pred             ceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeec-eEEeceE-------
Q 015636          228 AFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK-------  294 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~-------  294 (403)
                      ....|+.|+|+|....     ....+|+.|.|+|.+    +...|..|.|.|.+.+..-.++.++ |+.++++       
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G  230 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI----IKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKG  230 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceE----ccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCc
Confidence            4578999999996532     124689999999998    6788999999999998888888887 7766655       


Q ss_pred             -------------------------------------------------------EEEEEeCCCCCCCCEEEEcCCccCC
Q 015636          295 -------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAGNAG  319 (403)
Q Consensus       295 -------------------------------------------------------~l~V~Ip~G~~~G~~i~l~g~G~~~  319 (403)
                                                                             .++|.||+|+++|++++|+|+|++.
T Consensus       231 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~  310 (369)
T PRK14288        231 NEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKH  310 (369)
T ss_pred             cCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCC
Confidence                                                                   5899999999999999999999997


Q ss_pred             CCCCCcccEEEEEEEEcCCCceeeCC
Q 015636          320 GRGRQHGNLFIKLKVADDPIFSRDGA  345 (403)
Q Consensus       320 ~~g~~~GDL~v~i~v~~h~~F~R~G~  345 (403)
                      ..+...|||||+|+|+.|+.++.+..
T Consensus       311 ~~~~~~GDL~v~~~v~~P~~ls~~q~  336 (369)
T PRK14288        311 PESSYRGSLIVELQVIYPKSLNKEQQ  336 (369)
T ss_pred             CCCCCCCCEEEEEEEECCCCCCHHHH
Confidence            55445799999999998887665553

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=1.2e-14  Score=147.07  Aligned_cols=138  Identities=28%  Similarity=0.601  Sum_probs=106.4

Q ss_pred             EEEEEeeeccccCcceecc--ccceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      .++.++-...+..|.-.-.  -.....|+.|+|+|....     ....+|+.|+|.|++    +..+|..|.|.|.+.+.
T Consensus       151 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~  226 (391)
T PRK14284        151 KELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRV----ITDPCSVCRGQGRIKDK  226 (391)
T ss_pred             EEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcc----cCCcCCCCCCcceecce
Confidence            3445555555443332221  123578999999997432     125699999999998    67889999999999888


Q ss_pred             eeeEEeec-eEEeceE----------------------------------------------------------------
Q 015636          280 HCMTCKGS-GVVDGVK----------------------------------------------------------------  294 (403)
Q Consensus       280 ~C~~C~g~-G~~~~~~----------------------------------------------------------------  294 (403)
                      +-.++.++ |+.++++                                                                
T Consensus       227 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~  306 (391)
T PRK14284        227 RSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEG  306 (391)
T ss_pred             EEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCc
Confidence            88888887 8887776                                                                


Q ss_pred             EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEE
Q 015636          295 EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY  348 (403)
Q Consensus       295 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~  348 (403)
                      .++|.||+|+++|++++|+|+|++...+..+|||||+|+|..++.++.+..+|+
T Consensus       307 ~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll  360 (391)
T PRK14284        307 TCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELL  360 (391)
T ss_pred             EEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence            467899999999999999999999765557899999999998887777665543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=5.2e-14  Score=141.57  Aligned_cols=134  Identities=25%  Similarity=0.547  Sum_probs=101.5

Q ss_pred             EEEEEeeeccccCcceec--cccceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          207 VELVLSFAEAAKGCTKHV--SFDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v--~~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      .++.++-...+..|...-  .-.....|+.|+|+|....     ....+|+.|+|.|.+    +..+|..|.|.|.+.+.
T Consensus       138 k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~  213 (372)
T PRK14300        138 KNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQI----IKNPCKKCHGMGRYHKQ  213 (372)
T ss_pred             EEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceE----eCCCCCCCCCceEEEee
Confidence            344444444443333322  1233578999999997532     125689999999998    67889999999999888


Q ss_pred             eeeEEeec-eEEeceE---------------------------------------------------------------E
Q 015636          280 HCMTCKGS-GVVDGVK---------------------------------------------------------------E  295 (403)
Q Consensus       280 ~C~~C~g~-G~~~~~~---------------------------------------------------------------~  295 (403)
                      .-.++.++ |+.++.+                                                               .
T Consensus       214 ~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~  293 (372)
T PRK14300        214 RNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGK  293 (372)
T ss_pred             EEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCE
Confidence            77888776 7665554                                                               6


Q ss_pred             EEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeC
Q 015636          296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDG  344 (403)
Q Consensus       296 l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G  344 (403)
                      ++|.||+|+++|++++|+|+|++...+..+|||||+|+|+.+..++-+.
T Consensus       294 i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~q  342 (372)
T PRK14300        294 VNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQ  342 (372)
T ss_pred             EEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence            8899999999999999999999876556789999999999887755444

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.5e-14  Score=145.39  Aligned_cols=139  Identities=24%  Similarity=0.532  Sum_probs=106.0

Q ss_pred             eEEEEEeeeccccCcceec--cccceeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCCc
Q 015636          206 QVELVLSFAEAAKGCTKHV--SFDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLG  274 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v--~~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G  274 (403)
                      ..++.++....+.-|.-.-  .-.....|+.|+|+|.....         ...+|+.|.|.|.+    +...|..|+|.|
T Consensus       130 ~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g  205 (371)
T PRK14287        130 ETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI----IKQKCATCGGKG  205 (371)
T ss_pred             EEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc----ccccCCCCCCee
Confidence            3455555555544333221  22345789999999965321         25689999999998    678899999999


Q ss_pred             EEeeeeeeEEeec-eEEeceE-----------------------------------------------------------
Q 015636          275 RIIKDHCMTCKGS-GVVDGVK-----------------------------------------------------------  294 (403)
Q Consensus       275 ~~~~~~C~~C~g~-G~~~~~~-----------------------------------------------------------  294 (403)
                      .+.+....++.++ |+..+++                                                           
T Consensus       206 ~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~  285 (371)
T PRK14287        206 KVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPT  285 (371)
T ss_pred             EEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEc
Confidence            9988788888776 7666555                                                           


Q ss_pred             ---EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEE
Q 015636          295 ---EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY  348 (403)
Q Consensus       295 ---~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~  348 (403)
                         .++|.||+|+++|++++|+|+|++...+..+|||||+|+|..++.++++...|+
T Consensus       286 ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll  342 (371)
T PRK14287        286 LNGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELM  342 (371)
T ss_pred             CCCCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence               578999999999999999999998765556899999999999988877765443

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=2.6e-14  Score=144.02  Aligned_cols=135  Identities=28%  Similarity=0.533  Sum_probs=102.1

Q ss_pred             eEEEEEeeeccccCcceec--cccceeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCCc
Q 015636          206 QVELVLSFAEAAKGCTKHV--SFDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLG  274 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v--~~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G  274 (403)
                      ..++.++-...+..|.-.-  .-.....|+.|+|+|.....         ...+|+.|+|.|.+    +..+|+.|.|+|
T Consensus       131 ~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g  206 (378)
T PRK14278        131 TKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEV----IPDPCHECAGDG  206 (378)
T ss_pred             EEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCcccee----eCCCCCCCCCce
Confidence            3455555555554443322  22345789999999974321         25689999999998    678899999999


Q ss_pred             EEeeeeeeEEeec-eEEeceE-----------------------------------------------------------
Q 015636          275 RIIKDHCMTCKGS-GVVDGVK-----------------------------------------------------------  294 (403)
Q Consensus       275 ~~~~~~C~~C~g~-G~~~~~~-----------------------------------------------------------  294 (403)
                      .+.+.+-.++.++ |+.++++                                                           
T Consensus       207 ~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~t  286 (378)
T PRK14278        207 RVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEA  286 (378)
T ss_pred             eEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEec
Confidence            9988888888877 7766665                                                           


Q ss_pred             ----EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeC
Q 015636          295 ----EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDG  344 (403)
Q Consensus       295 ----~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G  344 (403)
                          .++|.||+|+++|++++|+|+|++...+..+|||||+|+|.-+..+..+.
T Consensus       287 ld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~q  340 (378)
T PRK14278        287 ILDGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHED  340 (378)
T ss_pred             CCCCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHH
Confidence                57899999999999999999999875555689999999999665544333

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.53  E-value=2.1e-14  Score=143.76  Aligned_cols=137  Identities=31%  Similarity=0.584  Sum_probs=103.7

Q ss_pred             EEEEEeeeccccCcceecc--ccceeecccCCCccccCC---------CccccCCCccceeEEEeCCccccCCcCCCCcE
Q 015636          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGR  275 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~  275 (403)
                      .++.++....+..|...-.  -.....|+.|+|+|....         ....+|+.|+|.|++    ++..|..|.|+|.
T Consensus       136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~  211 (354)
T TIGR02349       136 KEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKI----IKEPCSTCKGKGR  211 (354)
T ss_pred             EEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCccee----cCCCCCCCCCCcE
Confidence            3455555555544433322  123578999999996432         124699999999998    6778999999999


Q ss_pred             EeeeeeeEEeec-eEEeceE------------------------------------------------------------
Q 015636          276 IIKDHCMTCKGS-GVVDGVK------------------------------------------------------------  294 (403)
Q Consensus       276 ~~~~~C~~C~g~-G~~~~~~------------------------------------------------------------  294 (403)
                      +.+..-.++.++ |+..+++                                                            
T Consensus       212 v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~l  291 (354)
T TIGR02349       212 VKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTL  291 (354)
T ss_pred             ecccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecC
Confidence            887777777766 6655544                                                            


Q ss_pred             --EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeE
Q 015636          295 --EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADV  347 (403)
Q Consensus       295 --~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL  347 (403)
                        .++|.||+|+++|++++|+|+|++...+..+|||||+|+|..++.+++++.++
T Consensus       292 dG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~  346 (354)
T TIGR02349       292 DGDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKEL  346 (354)
T ss_pred             CceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence              47899999999999999999999976555789999999999888887766544

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=2.9e-14  Score=143.33  Aligned_cols=136  Identities=25%  Similarity=0.450  Sum_probs=101.3

Q ss_pred             EEEEEeeeccccCcceecc--ccceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      .+|.++....+..|.-.-.  -.....|+.|+|+|....     ....+|+.|+|+|++    +..+|..|.|.|.+.+.
T Consensus       143 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~~~~~  218 (372)
T PRK14286        143 YKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTV----ISNPCKTCGGQGLQEKR  218 (372)
T ss_pred             EEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeE----ecccCCCCCCCcEEecc
Confidence            4455555555543333221  123468999999996532     235689999999998    67889999999999877


Q ss_pred             eeeEEeec-eEEeceE---------------------------------------------------------------E
Q 015636          280 HCMTCKGS-GVVDGVK---------------------------------------------------------------E  295 (403)
Q Consensus       280 ~C~~C~g~-G~~~~~~---------------------------------------------------------------~  295 (403)
                      +-.++.++ |+..+++                                                               .
T Consensus       219 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~  298 (372)
T PRK14286        219 RTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKK  298 (372)
T ss_pred             eEEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCE
Confidence            77777765 6655544                                                               5


Q ss_pred             EEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCe
Q 015636          296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGAD  346 (403)
Q Consensus       296 l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~D  346 (403)
                      ++|.||+|+++|++++|+|+|++...+...|||||+|+|.-+..+..+..+
T Consensus       299 i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~  349 (372)
T PRK14286        299 AKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRE  349 (372)
T ss_pred             EEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHH
Confidence            889999999999999999999997655568999999999977665554433

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=3.8e-14  Score=143.32  Aligned_cols=132  Identities=27%  Similarity=0.536  Sum_probs=100.5

Q ss_pred             EEEEEeeeccccCcceecc--ccceeecccCCCccccCCC-----ccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPADA-----KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      .++.++-...+.-|.-.-.  -.....|+.|+|+|.....     ...+|+.|+|+|++    +..+|..|.|.|.+.+.
T Consensus       166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----i~~~C~~C~G~g~v~~~  241 (392)
T PRK14279        166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSI----IEDPCEECKGTGVTTRT  241 (392)
T ss_pred             EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEE----eCCcCCCCCCCeEEEEe
Confidence            4555555555543333222  2245789999999975321     25799999999998    67889999999999888


Q ss_pred             eeeEEeec-eEEeceE--------------------------------------------------------------EE
Q 015636          280 HCMTCKGS-GVVDGVK--------------------------------------------------------------EV  296 (403)
Q Consensus       280 ~C~~C~g~-G~~~~~~--------------------------------------------------------------~l  296 (403)
                      +-.++.++ |+.++++                                                              .+
T Consensus       242 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i  321 (392)
T PRK14279        242 RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPV  321 (392)
T ss_pred             eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceE
Confidence            77788776 7666555                                                              57


Q ss_pred             EEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceee
Q 015636          297 KVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRD  343 (403)
Q Consensus       297 ~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~  343 (403)
                      +|+||+|+++|++|+|+|+|++.. +..+|||||+|+|.-+..+..+
T Consensus       322 ~v~Ip~g~~~g~~iri~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~  367 (392)
T PRK14279        322 GVKVPAGTADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGA  367 (392)
T ss_pred             EEEECCCCCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHH
Confidence            899999999999999999999964 4568999999999977654333

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=3.8e-14  Score=143.61  Aligned_cols=131  Identities=31%  Similarity=0.525  Sum_probs=100.0

Q ss_pred             eEEEEEeeecccc---CcceeccccceeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCC
Q 015636          206 QVELVLSFAEAAK---GCTKHVSFDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGL  273 (403)
Q Consensus       206 ~~~l~ltlee~~~---G~~~~v~~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~  273 (403)
                      ..++.++....+.   |....-  .....|+.|+|+|.....         ...+|+.|+|.|.+    +..+|+.|.|.
T Consensus       155 ~~~i~~~r~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~  228 (397)
T PRK14281        155 EKTLKIKKQVPCKECNGTGSKT--GATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRV----VKDRCPACYGE  228 (397)
T ss_pred             EEEEEEEeeecCCCCCCcccCC--CCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeee----eCCCCCCCCCC
Confidence            3455555555543   332222  245789999999975321         25689999999998    67889999999


Q ss_pred             cEEeeeeeeEEeec-eEEeceE----------------------------------------------------------
Q 015636          274 GRIIKDHCMTCKGS-GVVDGVK----------------------------------------------------------  294 (403)
Q Consensus       274 G~~~~~~C~~C~g~-G~~~~~~----------------------------------------------------------  294 (403)
                      |.+.+..-.++.++ |+.++++                                                          
T Consensus       229 g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  308 (397)
T PRK14281        229 GIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVP  308 (397)
T ss_pred             ccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEee
Confidence            99988878888876 7766665                                                          


Q ss_pred             ----EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCcee
Q 015636          295 ----EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSR  342 (403)
Q Consensus       295 ----~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R  342 (403)
                          .++|.||+|+++|++++|+|+|++...+...|||||+|+|.-+..+..
T Consensus       309 tldg~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~  360 (397)
T PRK14281        309 TLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSH  360 (397)
T ss_pred             cCCccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCH
Confidence                578999999999999999999998755556899999999996655433

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=4.9e-14  Score=141.94  Aligned_cols=134  Identities=25%  Similarity=0.521  Sum_probs=100.4

Q ss_pred             EEEEEeeeccccCcceec--cccceeecccCCCccccCC---------CccccCCCccceeEEEeCCccccCCcCCCCcE
Q 015636          207 VELVLSFAEAAKGCTKHV--SFDAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGR  275 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v--~~~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~  275 (403)
                      .++.++....+..|...-  .-.....|+.|+|+|....         ..+.+|+.|+|.|.+    +..+|+.|.|+|.
T Consensus       136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~  211 (376)
T PRK14280        136 KEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQE----IKEKCPTCHGKGK  211 (376)
T ss_pred             eEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCce----ecCCCCCCCCceE
Confidence            344455554444333322  2234578999999996431         135689999999998    6788999999999


Q ss_pred             EeeeeeeEEeec-eEEeceE------------------------------------------------------------
Q 015636          276 IIKDHCMTCKGS-GVVDGVK------------------------------------------------------------  294 (403)
Q Consensus       276 ~~~~~C~~C~g~-G~~~~~~------------------------------------------------------------  294 (403)
                      +.+.+-.++.++ |+..+++                                                            
T Consensus       212 v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tl  291 (376)
T PRK14280        212 VRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTL  291 (376)
T ss_pred             EEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecC
Confidence            988777777776 7666555                                                            


Q ss_pred             --EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeC
Q 015636          295 --EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDG  344 (403)
Q Consensus       295 --~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G  344 (403)
                        .++|.||+|+++|++++|+|+|++...+...|||||+|+|..+..+..+.
T Consensus       292 dg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q  343 (376)
T PRK14280        292 HGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQ  343 (376)
T ss_pred             CceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence              57899999999999999999999876555689999999999776544333

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=5.2e-14  Score=141.95  Aligned_cols=134  Identities=25%  Similarity=0.524  Sum_probs=101.0

Q ss_pred             EEEEEeeeccccCcceecc--ccceeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCCcE
Q 015636          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGR  275 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~  275 (403)
                      .++.++-...+.-|.-.-.  -.....|+.|+|+|.....         ...+|+.|+|.|.+    +..+|..|.|.|.
T Consensus       139 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~  214 (380)
T PRK14276        139 KEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKE----IKEPCQTCHGTGH  214 (380)
T ss_pred             EEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcc----ccCCCCCCCCceE
Confidence            4455555544433322221  1235689999999975321         25689999999998    6788999999999


Q ss_pred             EeeeeeeEEeec-eEEeceE------------------------------------------------------------
Q 015636          276 IIKDHCMTCKGS-GVVDGVK------------------------------------------------------------  294 (403)
Q Consensus       276 ~~~~~C~~C~g~-G~~~~~~------------------------------------------------------------  294 (403)
                      +.+....++.++ |+..+++                                                            
T Consensus       215 ~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tl  294 (380)
T PRK14276        215 EKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTV  294 (380)
T ss_pred             EEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcC
Confidence            988888888877 7766665                                                            


Q ss_pred             --EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeC
Q 015636          295 --EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDG  344 (403)
Q Consensus       295 --~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G  344 (403)
                        .++|.||+|+++|++++|+|+|++...+..+|||||+|+|.-+..+..+.
T Consensus       295 dg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q  346 (380)
T PRK14276        295 HGDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQ  346 (380)
T ss_pred             CCcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence              57899999999999999999999976555689999999999776544433

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.48  E-value=6.8e-14  Score=140.87  Aligned_cols=120  Identities=24%  Similarity=0.455  Sum_probs=95.8

Q ss_pred             ceeecccCCCccccCC---------CccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeec-eEEeceE---
Q 015636          228 AFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK---  294 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~---  294 (403)
                      ....|+.|+|+|....         ....+|+.|.|.|++    +...|..|.|.|.+.+..-.++.++ |+..+++   
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l  234 (374)
T PRK14293        159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV----IEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRV  234 (374)
T ss_pred             CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE----eccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEE
Confidence            3468999999997431         124689999999998    6778999999999877666666655 5544443   


Q ss_pred             -----------------------------------------------------------EEEEEeCCCCCCCCEEEEcCC
Q 015636          295 -----------------------------------------------------------EVKVTIPAGVDSGDTIRVPEA  315 (403)
Q Consensus       295 -----------------------------------------------------------~l~V~Ip~G~~~G~~i~l~g~  315 (403)
                                                                                 .++|.||+|+++|++++|+|+
T Consensus       235 ~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~  314 (374)
T PRK14293        235 SGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENK  314 (374)
T ss_pred             ccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCC
Confidence                                                                       568999999999999999999


Q ss_pred             ccCCCCC-CCcccEEEEEEEEcCCCceeeCCeEEEEe
Q 015636          316 GNAGGRG-RQHGNLFIKLKVADDPIFSRDGADVYVDS  351 (403)
Q Consensus       316 G~~~~~g-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~  351 (403)
                      |++...+ +..|||||+|+|..++.+++++.+|+..+
T Consensus       315 G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l  351 (374)
T PRK14293        315 GVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL  351 (374)
T ss_pred             CCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            9986543 35799999999999999998887775543

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.48  E-value=5.7e-14  Score=126.17  Aligned_cols=66  Identities=32%  Similarity=0.539  Sum_probs=58.7

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 015636           82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRR  147 (403)
Q Consensus        82 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~dp~~R~~yd~~  147 (403)
                      .|||++|||++.  ++..+|+++||+|++++|||+..+.+.     +.+.|..||+||++|+||.+|+.|+-.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            389999999995  688999999999999999999875443     567899999999999999999999864

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.48  E-value=1.1e-13  Score=139.22  Aligned_cols=133  Identities=20%  Similarity=0.475  Sum_probs=99.8

Q ss_pred             EEEEEeeeccccCcceecc--ccceeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCCcE
Q 015636          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGR  275 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~  275 (403)
                      .++.++-...+..|...-.  -.....|+.|+|+|.....         ...+|+.|+|+|++    +...|+.|.|.|.
T Consensus       142 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~----~~~~C~~C~G~g~  217 (372)
T PRK14296        142 KIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKI----IKNKCKNCKGKGK  217 (372)
T ss_pred             EEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCccee----ecccccCCCCceE
Confidence            4455555555544443322  1235789999999975422         24689999999998    6788999999999


Q ss_pred             EeeeeeeEEeec-eEEeceE------------------------------------------------------------
Q 015636          276 IIKDHCMTCKGS-GVVDGVK------------------------------------------------------------  294 (403)
Q Consensus       276 ~~~~~C~~C~g~-G~~~~~~------------------------------------------------------------  294 (403)
                      +.+.+-.++.++ |+..+++                                                            
T Consensus       218 v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~t  297 (372)
T PRK14296        218 YLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKT  297 (372)
T ss_pred             EEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeC
Confidence            887777787776 7666655                                                            


Q ss_pred             ---EEEEEeCCCCCCCCEEEEcCCccCCC-CCCCcccEEEEEEEEcCCCceee
Q 015636          295 ---EVKVTIPAGVDSGDTIRVPEAGNAGG-RGRQHGNLFIKLKVADDPIFSRD  343 (403)
Q Consensus       295 ---~l~V~Ip~G~~~G~~i~l~g~G~~~~-~g~~~GDL~v~i~v~~h~~F~R~  343 (403)
                         .++|.||+|+++|++++|+|+|+|.. .+...|||||+|+|+-+..+..+
T Consensus       298 ldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~  350 (372)
T PRK14296        298 LDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKK  350 (372)
T ss_pred             CCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHH
Confidence               67899999999999999999999843 23457999999999966554433

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=1.2e-13  Score=139.65  Aligned_cols=132  Identities=27%  Similarity=0.509  Sum_probs=99.6

Q ss_pred             EEEEEeeeccccCcceecc--ccceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      .++.++-...+.-|.-.-.  -.....|+.|+|+|....     ..+.+|+.|+|+|.+    +..+|..|.|.|.+.+.
T Consensus       159 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~~~~~  234 (389)
T PRK14295        159 VPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLI----ADDPCLVCKGSGRAKSS  234 (389)
T ss_pred             EEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEE----eccCCCCCCCCceEeee
Confidence            4455555554444433222  233578999999996432     235689999999998    67889999999999887


Q ss_pred             eeeEEeec-eEEeceE---------------------------------------------------------------E
Q 015636          280 HCMTCKGS-GVVDGVK---------------------------------------------------------------E  295 (403)
Q Consensus       280 ~C~~C~g~-G~~~~~~---------------------------------------------------------------~  295 (403)
                      +-.++.++ |+..+++                                                               .
T Consensus       235 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~  314 (389)
T PRK14295        235 RTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPP  314 (389)
T ss_pred             eEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCE
Confidence            77788776 7766655                                                               6


Q ss_pred             EEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceee
Q 015636          296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRD  343 (403)
Q Consensus       296 l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~  343 (403)
                      ++|.||+|+++|++|+|+|+|++.. ++.+|||||+|+|.-+.....+
T Consensus       315 ~~v~ip~g~~~g~~iri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~  361 (389)
T PRK14295        315 VTVKLPPGTPNGRVLRVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGK  361 (389)
T ss_pred             EEEEECCccCCCcEEEECCCCcCCC-CCCCCCEEEEEEEECCCCCCHH
Confidence            8899999999999999999999864 4568999999999966554333

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=1.1e-13  Score=139.73  Aligned_cols=133  Identities=26%  Similarity=0.482  Sum_probs=101.0

Q ss_pred             EEEEEeeeccccCcceecc--ccceeecccCCCccccCC---------CccccCCCccceeEEEeCCccccCCcCCCCcE
Q 015636          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGR  275 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~  275 (403)
                      .++.++....+..|.-.-.  -.....|+.|+|+|....         ..+.+|+.|+|.|.+    +...|..|.|.|.
T Consensus       141 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~  216 (380)
T PRK14297        141 KEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV----IEDPCNKCHGKGK  216 (380)
T ss_pred             EEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE----cCCCCCCCCCCeE
Confidence            4455555555443333221  223578999999996531         235789999999998    6788999999999


Q ss_pred             EeeeeeeEEeec-eEEeceE------------------------------------------------------------
Q 015636          276 IIKDHCMTCKGS-GVVDGVK------------------------------------------------------------  294 (403)
Q Consensus       276 ~~~~~C~~C~g~-G~~~~~~------------------------------------------------------------  294 (403)
                      +.+....++.++ |+..+++                                                            
T Consensus       217 v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~l  296 (380)
T PRK14297        217 VRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTV  296 (380)
T ss_pred             EEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcC
Confidence            888888888877 7766665                                                            


Q ss_pred             --EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceee
Q 015636          295 --EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRD  343 (403)
Q Consensus       295 --~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~  343 (403)
                        .++|.||+|+++|++++|+|+|++...+..+|||||+|+|+-+..+..+
T Consensus       297 dg~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~  347 (380)
T PRK14297        297 DGEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSK  347 (380)
T ss_pred             CCcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHH
Confidence              5789999999999999999999987655568999999999966554333

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=1.1e-13  Score=139.89  Aligned_cols=131  Identities=24%  Similarity=0.501  Sum_probs=100.8

Q ss_pred             eEEEEEeeeccccCcceecc--ccceeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCCc
Q 015636          206 QVELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLG  274 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v~--~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G  274 (403)
                      ..++.++-...+..|...-.  -.....|+.|+|+|.....         ...+|+.|+|.|.+    +...|..|.|+|
T Consensus       146 ~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g  221 (386)
T PRK14289        146 EKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI----IKKKCKKCGGEG  221 (386)
T ss_pred             EEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccc----cCcCCCCCCCCc
Confidence            34555565666555544332  2345789999999975422         25689999999998    678899999999


Q ss_pred             EEeeeeeeEEeec-eEEeceE-----------------------------------------------------------
Q 015636          275 RIIKDHCMTCKGS-GVVDGVK-----------------------------------------------------------  294 (403)
Q Consensus       275 ~~~~~~C~~C~g~-G~~~~~~-----------------------------------------------------------  294 (403)
                      .+.+..-.++.++ |+..+++                                                           
T Consensus       222 ~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~  301 (386)
T PRK14289        222 IVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPT  301 (386)
T ss_pred             EEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeec
Confidence            9988777777776 6665554                                                           


Q ss_pred             ---EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCc
Q 015636          295 ---EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIF  340 (403)
Q Consensus       295 ---~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F  340 (403)
                         .++|.||+|+++|++++|+|+|++...+..+|||||+|+|+-+...
T Consensus       302 ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l  350 (386)
T PRK14289        302 IDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETL  350 (386)
T ss_pred             CCceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCC
Confidence               6789999999999999999999987655678999999999955443

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=1.4e-13  Score=139.16  Aligned_cols=132  Identities=28%  Similarity=0.536  Sum_probs=97.7

Q ss_pred             EEEEEeeeccccCcceec--cccceeecccCCCccccCC---------CccccCCCccceeEEEeCCccccCCcCCCCcE
Q 015636          207 VELVLSFAEAAKGCTKHV--SFDAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGR  275 (403)
Q Consensus       207 ~~l~ltlee~~~G~~~~v--~~~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~  275 (403)
                      .+|.++-...+.-|.-.-  .-.....|+.|+|+|....         ....+|+.|+|+|.+    +..+|..|.|+|.
T Consensus       148 ~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~  223 (386)
T PRK14277        148 KEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKI----ITDPCNKCGGTGR  223 (386)
T ss_pred             EEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceee----ccCCCCCCCCCcE
Confidence            344455555444332222  1233578999999996532         124689999999998    6788999999999


Q ss_pred             EeeeeeeEEeec-eEEeceE------------------------------------------------------------
Q 015636          276 IIKDHCMTCKGS-GVVDGVK------------------------------------------------------------  294 (403)
Q Consensus       276 ~~~~~C~~C~g~-G~~~~~~------------------------------------------------------------  294 (403)
                      +.+.+..++.++ |+..+++                                                            
T Consensus       224 v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tl  303 (386)
T PRK14277        224 IRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTL  303 (386)
T ss_pred             EeeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcC
Confidence            987777777765 6655554                                                            


Q ss_pred             --EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCcee
Q 015636          295 --EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSR  342 (403)
Q Consensus       295 --~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R  342 (403)
                        .++|.||+|+++|++++|+|+|++...+...|||||+|+|+-+...+.
T Consensus       304 dG~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~  353 (386)
T PRK14277        304 DGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTE  353 (386)
T ss_pred             CCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCH
Confidence              468899999999999999999998755556899999999996554433

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=1.3e-13  Score=138.75  Aligned_cols=137  Identities=24%  Similarity=0.497  Sum_probs=102.7

Q ss_pred             EEEEEeeecccc---CcceeccccceeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCCc
Q 015636          207 VELVLSFAEAAK---GCTKHVSFDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLG  274 (403)
Q Consensus       207 ~~l~ltlee~~~---G~~~~v~~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G  274 (403)
                      .++.++-...+.   |............|+.|+|+|.....         ...+|+.|+|.|..    +...|..|.|+|
T Consensus       132 ~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g  207 (371)
T PRK14292        132 VEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQI----ITDPCTVCRGRG  207 (371)
T ss_pred             EEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCccccee----cCCCCCCCCCce
Confidence            344444444443   43332222336789999999965421         24689999999998    688999999999


Q ss_pred             EEeeeeeeEEeec-eEEeceE-----------------------------------------------------------
Q 015636          275 RIIKDHCMTCKGS-GVVDGVK-----------------------------------------------------------  294 (403)
Q Consensus       275 ~~~~~~C~~C~g~-G~~~~~~-----------------------------------------------------------  294 (403)
                      .+.+..-.++.++ |+..+++                                                           
T Consensus       208 ~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tld  287 (371)
T PRK14292        208 RTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLD  287 (371)
T ss_pred             EEeecceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCC
Confidence            9987777777776 7665554                                                           


Q ss_pred             -EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeE
Q 015636          295 -EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADV  347 (403)
Q Consensus       295 -~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL  347 (403)
                       ..+|.||+|+++|++++|+|+|++...+..+|||||+|+|+.++.++.+...|
T Consensus       288 G~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~l  341 (371)
T PRK14292        288 GPQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREA  341 (371)
T ss_pred             CCEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence             35799999999999999999999876566789999999999988776655443

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.46  E-value=7.8e-14  Score=124.57  Aligned_cols=67  Identities=30%  Similarity=0.510  Sum_probs=58.3

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        82 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~HPD~~~~~~~---a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      .|||++|||++.  ++..+|+++||+|++++|||++.+..+   +.+.+..||+||++|+||.+|+.|+-..
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            489999999996  789999999999999999999875332   3345789999999999999999998764

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.46  E-value=1.1e-13  Score=124.62  Aligned_cols=67  Identities=31%  Similarity=0.513  Sum_probs=58.8

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChhHHH-----HHHHHHHHHHHhhhhhhhhhhhhc
Q 015636           81 KRDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPSAKR-----KFQEIRDAYETLRDSEKRAQYDRR  147 (403)
Q Consensus        81 ~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~HPD~~~~~~~a~~-----~f~~i~~Ay~vL~dp~~R~~yd~~  147 (403)
                      ..|||++|||++.  ++..+|+++|++|++++|||++.+.+.+++     .+..||+||++|+||.+|+.|+-.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~   78 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH   78 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence            3699999999995  688999999999999999999986665444     458999999999999999999964

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.46  E-value=1.3e-13  Score=123.65  Aligned_cols=69  Identities=23%  Similarity=0.435  Sum_probs=61.0

Q ss_pred             CCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           80 SKRDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      ...|||++|||++.  .+..+|+++||+|++++|||++.+.+.     +.+.|..||+||++|+||.+|+.|+-..
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l   77 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL   77 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            45799999999996  678999999999999999999976553     5567999999999999999999999753

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=5.2e-13  Score=134.79  Aligned_cols=128  Identities=30%  Similarity=0.535  Sum_probs=98.8

Q ss_pred             eEEEEEeeeccccCcceec--cccceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEee
Q 015636          206 QVELVLSFAEAAKGCTKHV--SFDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v--~~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (403)
                      ..++.++-...+..|...-  .-.....|+.|+|+|....     ..+.+|+.|+|.|.     +...|..|.|.|.+.+
T Consensus       148 ~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-----~~~~C~~C~G~g~v~~  222 (382)
T PRK14291        148 TVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-----LREPCSKCNGRGLVIK  222 (382)
T ss_pred             EEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-----EccCCCCCCCCceEEe
Confidence            3455555555554443322  1234578999999996532     23578999999995     3678999999999998


Q ss_pred             eeeeEEeec-eEEeceE---------------------------------------------------------------
Q 015636          279 DHCMTCKGS-GVVDGVK---------------------------------------------------------------  294 (403)
Q Consensus       279 ~~C~~C~g~-G~~~~~~---------------------------------------------------------------  294 (403)
                      ..-.++.++ |+.++++                                                               
T Consensus       223 ~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~  302 (382)
T PRK14291        223 KETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGK  302 (382)
T ss_pred             eeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCC
Confidence            888888887 8777665                                                               


Q ss_pred             EEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCC
Q 015636          295 EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDP  338 (403)
Q Consensus       295 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~  338 (403)
                      .++|.||+|+++|++|+|+|+|++...+..+|||||+|+|.-+.
T Consensus       303 ~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~  346 (382)
T PRK14291        303 KEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK  346 (382)
T ss_pred             EEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence            58999999999999999999999976555689999999999553

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.45  E-value=5.3e-13  Score=135.74  Aligned_cols=125  Identities=24%  Similarity=0.515  Sum_probs=98.0

Q ss_pred             ceeecccCCCccccCC---------CccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeec-eEEeceE---
Q 015636          228 AFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK---  294 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~---  294 (403)
                      ....|+.|+|+|....         ..+.+|+.|+|+|++..  ...+|..|.|.|.+.+.+-.++.++ |+.++++   
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~--~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~  242 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP--ESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITF  242 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc--ccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEE
Confidence            4578999999996321         12568999999999721  2478999999999998888999987 8887766   


Q ss_pred             -----------------------------------------------------------EEEEEeCCC--CCCCCEEEEc
Q 015636          295 -----------------------------------------------------------EVKVTIPAG--VDSGDTIRVP  313 (403)
Q Consensus       295 -----------------------------------------------------------~l~V~Ip~G--~~~G~~i~l~  313 (403)
                                                                                 .+.|.||+|  +++|++++|+
T Consensus       243 ~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~  322 (421)
T PTZ00037        243 HGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVIN  322 (421)
T ss_pred             ecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeC
Confidence                                                                       588999999  9999999999


Q ss_pred             CCccCCCCC-CCcccEEEEEEEEcC--CCceeeCCeEEEEeecCHhhhhcCC
Q 015636          314 EAGNAGGRG-RQHGNLFIKLKVADD--PIFSRDGADVYVDSNISFTQAILGG  362 (403)
Q Consensus       314 g~G~~~~~g-~~~GDL~v~i~v~~h--~~F~R~G~DL~~~~~Isl~eAllG~  362 (403)
                      |+|+|...+ ...|||||+|+|.-+  ..+        +.....+.+.|+..
T Consensus       323 geGmP~~~~~~~rGDL~V~~~V~~P~~~~L--------s~~qk~ll~~l~~~  366 (421)
T PTZ00037        323 NEGMPTYKSPFKKGNLYVTFEVIFPVDRKF--------TNEEKEILKSLFPQ  366 (421)
T ss_pred             CCCcccCCCCCCCCCEEEEEEEEcCCCCCC--------CHHHHHHHHHhccC
Confidence            999986543 357999999999955  443        33345556666653

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=3e-13  Score=136.41  Aligned_cols=113  Identities=31%  Similarity=0.601  Sum_probs=89.4

Q ss_pred             ceeecccCCCccccCC---------CccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeec-eEEeceE---
Q 015636          228 AFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK---  294 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~---  294 (403)
                      ....|+.|+|+|....         ....+|+.|.|.|..    +..+|..|.|+|.+.+.+..++..+ |+..+++   
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l  237 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI----VEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRV  237 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee----cCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEE
Confidence            3468999999997532         125689999999998    6788999999999887777777765 5443333   


Q ss_pred             -----------------------------------------------------------EEEEEeCCCCCCCCEEEEcCC
Q 015636          295 -----------------------------------------------------------EVKVTIPAGVDSGDTIRVPEA  315 (403)
Q Consensus       295 -----------------------------------------------------------~l~V~Ip~G~~~G~~i~l~g~  315 (403)
                                                                                 .++|.||+|+++|++++|+|+
T Consensus       238 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~  317 (378)
T PRK14283        238 SGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGH  317 (378)
T ss_pred             eccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCC
Confidence                                                                       578999999999999999999


Q ss_pred             ccCCCCCCCcccEEEEEEEEcCCCceeeC
Q 015636          316 GNAGGRGRQHGNLFIKLKVADDPIFSRDG  344 (403)
Q Consensus       316 G~~~~~g~~~GDL~v~i~v~~h~~F~R~G  344 (403)
                      |++...+..+|||||+|+|.-+...+.+.
T Consensus       318 G~p~~~~~~~GdL~v~~~v~~P~~l~~~q  346 (378)
T PRK14283        318 GMPSLRWSGKGNLYVKVKVVVPKKLSPKQ  346 (378)
T ss_pred             CCCCCCCCCCCCEEEEEEEEeCCCCCHHH
Confidence            99865555689999999999555444333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.9e-13  Score=132.89  Aligned_cols=69  Identities=45%  Similarity=0.719  Sum_probs=65.1

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRR  147 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~  147 (403)
                      +...|||.|||+.++|+..|||+|||++|+.+|||++.++ .+++.+|++|-+||.+|+||.+|..||..
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            4457999999999999999999999999999999999987 67899999999999999999999999986

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=4.5e-13  Score=132.90  Aligned_cols=67  Identities=36%  Similarity=0.600  Sum_probs=64.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      ..|+|.+|||++++|+++|||.||++|...|||||. .+.|+|.|+.++.|||+|+|+.+|..||...
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~  300 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL  300 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            469999999999999999999999999999999998 6899999999999999999999999999864

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=4.7e-13  Score=123.36  Aligned_cols=67  Identities=43%  Similarity=0.759  Sum_probs=62.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      ..|-|+||||+++|+.+||.+|||+||+++|||++++ +++.+.|..|.+||++|.|...|..||-..
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHh
Confidence            4588999999999999999999999999999999986 667799999999999999999999999863

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.33  E-value=1.8e-12  Score=107.92  Aligned_cols=54  Identities=26%  Similarity=0.433  Sum_probs=48.4

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhh
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR  136 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~  136 (403)
                      +...++|+||||+++|+.+|||++||+|++++|||+.++    .+.|++|++||++|.
T Consensus        62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~  115 (116)
T PTZ00100         62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL  115 (116)
T ss_pred             CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence            445799999999999999999999999999999998642    468899999999995

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.24  E-value=8.5e-12  Score=119.89  Aligned_cols=59  Identities=39%  Similarity=0.605  Sum_probs=52.2

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---C----hhHHHHHHHHHHHHHHhhh
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---N----PSAKRKFQEIRDAYETLRD  137 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~---~----~~a~~~f~~i~~Ay~vL~d  137 (403)
                      +...++|++|||++++|.+|||+|||+|+++||||++.+   +    +.++++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999743   1    2478999999999999985

>PHA02624 large T antigen; Provisional

Probab=99.17  E-value=2.4e-11  Score=126.42  Aligned_cols=59  Identities=29%  Similarity=0.566  Sum_probs=55.7

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhh
Q 015636           82 RDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY  144 (403)
Q Consensus        82 ~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~y  144 (403)
                      .++|++|||+++|  +.+|||+|||++|++||||++++    +++|++|++||++|+|+.+|..|
T Consensus        11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence            5899999999999  99999999999999999999753    58999999999999999999998

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.13  E-value=1e-10  Score=105.08  Aligned_cols=67  Identities=27%  Similarity=0.421  Sum_probs=58.2

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        82 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      .|||++|||++.  .+..+++++|++|++++|||+..+.+.     +.+.-..||+||.+|+||.+|+.|=-..
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L   75 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL   75 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence            499999999985  899999999999999999999876553     3445679999999999999999996643

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.09  E-value=6.7e-11  Score=116.99  Aligned_cols=70  Identities=33%  Similarity=0.640  Sum_probs=63.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----ChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN-----NPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSR  150 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~-----~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~  150 (403)
                      .-|||+|||++.+++..|||++||+|+.++||||.+.     ..+-+|.+.+|++||+.|.|...|+.|-.||.-
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP  171 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP  171 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence            3599999999999999999999999999999999875     235788999999999999999999999999743

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.04  E-value=7e-11  Score=89.46  Aligned_cols=57  Identities=49%  Similarity=1.036  Sum_probs=44.4

Q ss_pred             cccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEe-eeeeeEEeece
Q 015636          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRII-KDHCMTCKGSG  288 (403)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~-~~~C~~C~g~G  288 (403)
                      |+.|+|+|........+|+.|+|+|++.+.        .++.+|+.|+|+|+++ +++|..|+|.|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            899999999888899999999999997543        2478999999999999 99999999865

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.01  E-value=5.3e-10  Score=99.14  Aligned_cols=57  Identities=26%  Similarity=0.435  Sum_probs=48.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCh-----hHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           93 NASQDEIKKAFHMLAKQYHPDANKNNP-----SAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        93 ~as~~eIk~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      +.+..+|+++||+|++++|||+..+..     .+.+.|+.||+||++|+||.+|+.|+-...
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            357889999999999999999975533     266789999999999999999999998643

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=4.7e-10  Score=100.27  Aligned_cols=67  Identities=25%  Similarity=0.518  Sum_probs=60.4

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 015636           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDR  146 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~dp~~R~~yd~  146 (403)
                      -.-|+|+||.|.|+.+.++||+.||+|+...|||+|+++ +.|...|..|..||..|-|+..|..-+.
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            456999999999999999999999999999999999988 5689999999999999999986655444

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=4.6e-09  Score=102.59  Aligned_cols=106  Identities=27%  Similarity=0.575  Sum_probs=84.3

Q ss_pred             eecccCCCccccCCCc----------cccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeec-eEEeceE----
Q 015636          230 VPCDSCHGRGFPADAK----------TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK----  294 (403)
Q Consensus       230 ~~C~~C~G~G~~~~~~----------~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~----  294 (403)
                      ..|+.|.|+|......          +..|..|+|+|...  .....|..|.|.+++...+-.+.+++ |+..+.+    
T Consensus       144 ~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~--~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~  221 (337)
T KOG0712|consen  144 PKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI--SLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFK  221 (337)
T ss_pred             CCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc--cccccCcccccchhhhhhheeeccccCCCcccceeeee
Confidence            3799999999765322          56899999999861  24789999999998877666666655 5544433    


Q ss_pred             ----------------------------------------------------------EEEEEeCCC--CCCCCEEEEcC
Q 015636          295 ----------------------------------------------------------EVKVTIPAG--VDSGDTIRVPE  314 (403)
Q Consensus       295 ----------------------------------------------------------~l~V~Ip~G--~~~G~~i~l~g  314 (403)
                                                                                .+++.++||  +.+|+++++.|
T Consensus       222 geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~  301 (337)
T KOG0712|consen  222 GEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEG  301 (337)
T ss_pred             eeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecC
Confidence                                                                      678999999  99999999999


Q ss_pred             CccCCCCCCCcccEEEEEEEEcCC
Q 015636          315 AGNAGGRGRQHGNLFIKLKVADDP  338 (403)
Q Consensus       315 ~G~~~~~g~~~GDL~v~i~v~~h~  338 (403)
                      +||+..... .|||||.+.|+-++
T Consensus       302 ~gmp~~~~~-~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  302 EGMPIFRNP-KGDLYIKFEVKFPK  324 (337)
T ss_pred             CCcccccCC-CCcEEEEEEEEcCC
Confidence            999987555 99999999999554

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.85  E-value=3.4e-09  Score=83.52  Aligned_cols=74  Identities=30%  Similarity=0.512  Sum_probs=56.4

Q ss_pred             CceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeE
Q 015636          204 DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMT  283 (403)
Q Consensus       204 di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~  283 (403)
                      |+..++.|+|.||+.|+++.+..-                                                        
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l--------------------------------------------------------   24 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTL--------------------------------------------------------   24 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-T--------------------------------------------------------
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECC--------------------------------------------------------
Confidence            578899999999999999887521                                                        


Q ss_pred             EeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCC-CcccEEEEEEEEcCCCce
Q 015636          284 CKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGR-QHGNLFIKLKVADDPIFS  341 (403)
Q Consensus       284 C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~-~~GDL~v~i~v~~h~~F~  341 (403)
                             .+ +.++|.||+|+++|++++++|+|++...+. .+|||||+++|.-+..++
T Consensus        25 -------~g-~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls   75 (81)
T PF01556_consen   25 -------DG-KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLS   75 (81)
T ss_dssp             -------TS--EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTS
T ss_pred             -------CC-CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCC
Confidence                   12 568889999999999999999999865554 799999999999655543

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=9.8e-09  Score=95.84  Aligned_cols=74  Identities=34%  Similarity=0.426  Sum_probs=63.9

Q ss_pred             CCCCCCCCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCCC--CChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           75 GSCYSSKRDPYELLGVPE---NASQDEIKKAFHMLAKQYHPDANK--NNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        75 ~~~~~~~~~~Y~iLgv~~---~as~~eIk~ayr~la~~~HPD~~~--~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      ....+...|+|.+|||+.   .|++.+|.+|.++.+.+||||+..  ++-...+.|+.|+.||+||+|+.+|..||..-
T Consensus        36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            345677789999999987   688999999999999999999872  23346789999999999999999999999863

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.57  E-value=4.2e-08  Score=95.69  Aligned_cols=83  Identities=20%  Similarity=0.318  Sum_probs=68.1

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      .+|.|+.+++.|+|.+|+.|+++.|..                                                     
T Consensus       198 R~G~DL~~~~~Isl~eAl~G~~~~v~t-----------------------------------------------------  224 (291)
T PRK14299        198 LEGDDLYATVDVPAPIAVVGGKVRVMT-----------------------------------------------------  224 (291)
T ss_pred             EECCEEEEEEecCHHHHhCCCEEEEEC-----------------------------------------------------
Confidence            357899999999999999998776652                                                     


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEE
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY  348 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~  348 (403)
                                ..+  .++|.||+|+++|++++|+|+|++.. ++..|||||+|+|..++.++.++.+|+
T Consensus       225 ----------ldG--~~~v~ip~~~~~g~~~rl~g~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l  280 (291)
T PRK14299        225 ----------LDG--PVEVTIPPRTQAGRKLRLKGKGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLY  280 (291)
T ss_pred             ----------CCC--CEEEEeCCCcCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence                      122  36889999999999999999999863 456899999999999998888776654

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.38  E-value=3.8e-07  Score=75.61  Aligned_cols=57  Identities=39%  Similarity=0.906  Sum_probs=46.5

Q ss_pred             cceeecccCCCccccCCCccccCCCccceeEEEeC-----CccccCCcCCCCcEEeeeeeeEEeeceEEec
Q 015636          227 DAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP-----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDG  292 (403)
Q Consensus       227 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~  292 (403)
                      ...+.|+.|+|+|.      .+|+.|+|+|.+...     +++.+|+.|.|.|+.   .|..|.|.|++..
T Consensus        39 ~~~v~C~~C~GsG~------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~  100 (111)
T PLN03165         39 ENTQPCFPCSGTGA------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR  100 (111)
T ss_pred             ccCCCCCCCCCCCC------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence            34689999999997      389999999987542     236799999999975   5999999987653

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.37  E-value=8e-07  Score=87.37  Aligned_cols=77  Identities=27%  Similarity=0.390  Sum_probs=63.0

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      ..|.|+++++.|+|.+|+.|+++.|...                                                    
T Consensus       206 r~g~DL~~~~~Isl~~al~G~~~~i~~~----------------------------------------------------  233 (306)
T PRK10266        206 IVGQDLEIVVPLAPWEAALGAKVTVPTL----------------------------------------------------  233 (306)
T ss_pred             EeCCceEEEEecCHHHHhCCCEEEeeCC----------------------------------------------------
Confidence            3478999999999999999988777521                                                    


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceee
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRD  343 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~  343 (403)
                                 .+  .++|+||+|+.+|++++|+|+|++..  +..|||||+|+|..|+.+.-+
T Consensus       234 -----------~g--~v~v~ip~g~~~g~~~ri~g~G~p~~--~~~GdL~v~~~v~~P~~l~~~  282 (306)
T PRK10266        234 -----------KE--SILLTIPPGSQAGQRLRVKGKGLVSK--KQTGDLYAVLKIVMPPKPDEK  282 (306)
T ss_pred             -----------Cc--cEEEEeCCCcCCCCEEEECCCCCCCC--CCCCCEEEEEEEECCCCCCHH
Confidence                       12  36899999999999999999999864  247999999999998875443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=8.9e-07  Score=95.50  Aligned_cols=58  Identities=29%  Similarity=0.477  Sum_probs=48.2

Q ss_pred             CCCCCCCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhh
Q 015636           77 CYSSKRDPYELLGVPEN----ASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRD  137 (403)
Q Consensus        77 ~~~~~~~~Y~iLgv~~~----as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d  137 (403)
                      ..+...+.|+||.|+-+    -..+.||++|++||.+|||||||   +-.++|..||+|||.|+.
T Consensus      1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHHH
Confidence            34456789999998753    23477999999999999999995   457999999999999983

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.2e-06  Score=80.23  Aligned_cols=56  Identities=38%  Similarity=0.700  Sum_probs=50.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHH-Hhhhh
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYE-TLRDS  138 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~-vL~dp  138 (403)
                      ..+|.+|||..+|+.+|++.||..||+++|||...+ ....++|.+|.+||. ||+..
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999865 445579999999999 88754

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.01  E-value=5.1e-06  Score=65.38  Aligned_cols=45  Identities=31%  Similarity=0.551  Sum_probs=35.3

Q ss_pred             eEEEEeecCHhhhhcCCeEEeeCCCC-cEEEEEcCC----Ceeeeeeeee
Q 015636          346 DVYVDSNISFTQAILGGKVDVPTLSG-KVQVKVIVL----SLLLLLFYSL  390 (403)
Q Consensus       346 DL~~~~~Isl~eAllG~~~~I~tldG-~~~l~ip~~----~~~~~~~~~~  390 (403)
                      ||+++++|+++||++|++++|+|+|| .+.|+||+.    ..+.+-..++
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~   50 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGM   50 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESE
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCC
Confidence            89999999999999999999999999 799998873    4444444444

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=97.98  E-value=9.9e-06  Score=86.21  Aligned_cols=69  Identities=51%  Similarity=0.833  Sum_probs=64.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      .|||+||||+++|+.++||+|||+||++||||++++ +.+.++|++|++||++|+||.+|+.||.++..|
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            599999999999999999999999999999999976 778889999999999999999999999976543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=97.93  E-value=6.9e-06  Score=74.39  Aligned_cols=46  Identities=37%  Similarity=0.690  Sum_probs=29.9

Q ss_pred             CCcCCCCcEEee--eeeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEc
Q 015636          267 CSTCKGLGRIIK--DHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVP  313 (403)
Q Consensus       267 C~~C~G~G~~~~--~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~  313 (403)
                      |+.|+|+|++++  ++|..|+|.|.+..++.+.+.+ .|+.+|++|++.
T Consensus       102 C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642       102 CPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            333333333333  3455555555566778888899 999999999875

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.82  E-value=9.4e-06  Score=61.35  Aligned_cols=44  Identities=32%  Similarity=0.823  Sum_probs=32.4

Q ss_pred             cceeecccCCCccccCCC---------ccccCCCccceeEEEeCCc-cccCCcCCCCc
Q 015636          227 DAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPF-TSTCSTCKGLG  274 (403)
Q Consensus       227 ~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~-~~~C~~C~G~G  274 (403)
                      .....|+.|+|+|.....         ...+|+.|+|+|++    + ..+|+.|+|.|
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~----i~~~~C~~C~G~g   66 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKI----IEKDPCKTCKGSG   66 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-----TSSB-SSSTTSS
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeE----ECCCCCCCCCCcC
Confidence            345799999999986432         25789999999999    6 88999999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=3.8e-05  Score=62.34  Aligned_cols=59  Identities=27%  Similarity=0.393  Sum_probs=48.2

Q ss_pred             CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhh
Q 015636           76 SCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS  138 (403)
Q Consensus        76 ~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp  138 (403)
                      .+.+..+.--.||||+++++.+.||+|+|+.....|||+.++ |-.   =.+||||+++|...
T Consensus        50 ~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-PYl---AsKINEAKdlLe~~  108 (112)
T KOG0723|consen   50 EPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-PYL---ASKINEAKDLLEGT  108 (112)
T ss_pred             ccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-HHH---HHHHHHHHHHHhcc
Confidence            344556677889999999999999999999999999999975 421   13599999999743

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=6e-05  Score=65.40  Aligned_cols=67  Identities=25%  Similarity=0.472  Sum_probs=53.9

Q ss_pred             CCCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCC-----hhHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 015636           81 KRDPYELLGVPE--NASQDEIKKAFHMLAKQYHPDANKNN-----PSAKRKFQEIRDAYETLRDSEKRAQYDRR  147 (403)
Q Consensus        81 ~~~~Y~iLgv~~--~as~~eIk~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~  147 (403)
                      ..+||.++|...  ..++.-++.-|--..+++|||+....     ..|.+...++|+||.+|.||.+|+.|=.-
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk   80 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK   80 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            458999997654  55666677789999999999985432     13778899999999999999999999654

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.34  E-value=0.00012  Score=75.67  Aligned_cols=26  Identities=46%  Similarity=1.069  Sum_probs=13.3

Q ss_pred             cCCCccceeEEEeCCccccCCcCCCCcEE
Q 015636          248 ICSTCRGIGRVTIPPFTSTCSTCKGLGRI  276 (403)
Q Consensus       248 ~C~~C~G~G~~~~~~~~~~C~~C~G~G~~  276 (403)
                      .|+.|.|.|.+.   +..+|+.|+|+|++
T Consensus        55 pc~~c~gkG~V~---v~~~c~~c~G~gkv   80 (715)
T COG1107          55 PCPKCRGKGTVT---VYDTCPECGGTGKV   80 (715)
T ss_pred             CCCeeccceeEE---EEeecccCCCceeE
Confidence            455555555542   23455555555554

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.92  E-value=0.00052  Score=57.04  Aligned_cols=41  Identities=34%  Similarity=0.767  Sum_probs=33.2

Q ss_pred             ecccCCCccccCCC------ccccCCCccceeEEEeCCccccCCcCCCCcEEee
Q 015636          231 PCDSCHGRGFPADA------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (403)
Q Consensus       231 ~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (403)
                      .|+.|+|+|.....      .+.+|+.|+|+|+.       .|..|.|+|.+.+
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~-------~C~~C~G~G~~~~  100 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL-------TCTTCQGSGIQPR  100 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee-------eCCCCCCCEEEee
Confidence            89999999975321      15689999999975       4999999998754

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.0016  Score=58.74  Aligned_cols=69  Identities=32%  Similarity=0.526  Sum_probs=54.1

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           83 DPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        83 ~~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      +++..+|..+.+  ..+.++..|+.+++.+|||+....+.     +.+.+..++.||.+|.||.+|+.|=.....|
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g   77 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADG   77 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccc
Confidence            456667776655  34559999999999999999876543     3457889999999999999999997654433

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.65  E-value=0.0021  Score=58.30  Aligned_cols=41  Identities=34%  Similarity=0.595  Sum_probs=23.7

Q ss_pred             ccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeeceE
Q 015636          247 KICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGV  289 (403)
Q Consensus       247 ~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~  289 (403)
                      .+|+.|+|+|.+...  ..+|+.|+|+|++....-......|+
T Consensus       100 ~~C~~C~G~G~~i~~--~~~C~~C~G~G~v~~~~~~~~k~~g~  140 (186)
T TIGR02642       100 CKCPRCRGTGLIQRR--QRECDTCAGTGRFRPTVEDLLKSFGV  140 (186)
T ss_pred             CcCCCCCCeeEEecC--CCCCCCCCCccEEeeeEEEEEEeeec
Confidence            456666666665211  15688888888776555554444454

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.59  E-value=0.0017  Score=67.39  Aligned_cols=62  Identities=31%  Similarity=0.695  Sum_probs=42.2

Q ss_pred             eecccCCCccccCCCccccCCCccceeEEEeC-----------------CccccCCcCCCCcEEe-eeeeeEEeeceEEe
Q 015636          230 VPCDSCHGRGFPADAKTKICSTCRGIGRVTIP-----------------PFTSTCSTCKGLGRII-KDHCMTCKGSGVVD  291 (403)
Q Consensus       230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~C~~C~G~G~~~-~~~C~~C~g~G~~~  291 (403)
                      ..|+.|+|.|... .....|+.|+|+|..-..                 .+..+|+.|.|+|.+. -..|.+|.|.|-+.
T Consensus         3 ~~C~~C~g~G~i~-v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~   81 (715)
T COG1107           3 KKCPECGGKGKIV-VGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL   81 (715)
T ss_pred             ccccccCCCceEe-eeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence            4688888888643 234568888888865210                 1245888888888875 57888888876544


Q ss_pred             c
Q 015636          292 G  292 (403)
Q Consensus       292 ~  292 (403)
                      .
T Consensus        82 ~   82 (715)
T COG1107          82 T   82 (715)
T ss_pred             e
Confidence            3

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.0026  Score=61.40  Aligned_cols=61  Identities=33%  Similarity=0.766  Sum_probs=37.9

Q ss_pred             eeecccCCCccccC--CCcc-----------------ccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeeceE
Q 015636          229 FVPCDSCHGRGFPA--DAKT-----------------KICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGV  289 (403)
Q Consensus       229 ~~~C~~C~G~G~~~--~~~~-----------------~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~  289 (403)
                      .+.|+.|+|.|.-.  ...+                 ..|..|+|+|..       +|++|.|+|.   .+|.+|+|.|-
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~-------~C~tC~grG~---k~C~TC~gtgs  267 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIK-------ECHTCKGRGK---KPCTTCSGTGS  267 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcc-------cCCcccCCCC---cccccccCccc
Confidence            46788888887321  1112                 345555555543       6777777775   57999999877


Q ss_pred             EeceEEEEEE
Q 015636          290 VDGVKEVKVT  299 (403)
Q Consensus       290 ~~~~~~l~V~  299 (403)
                      +..-..+.|.
T Consensus       268 ll~~t~~vV~  277 (406)
T KOG2813|consen  268 LLNYTRIVVY  277 (406)
T ss_pred             eeeeEEEEEE
Confidence            6655555444

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.0026  Score=57.48  Aligned_cols=54  Identities=43%  Similarity=0.632  Sum_probs=46.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--Ch-----hHHHHHHHHHHHHHHh
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN--NP-----SAKRKFQEIRDAYETL  135 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~--~~-----~a~~~f~~i~~Ay~vL  135 (403)
                      .+.|.+|++...++..+|+++|+++....|||+-..  .+     .+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999997532  12     3778899999999854

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=95.05  E-value=0.025  Score=58.51  Aligned_cols=47  Identities=19%  Similarity=0.420  Sum_probs=35.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-------HHHHHHHHHHHHHHh
Q 015636           89 GVPENASQDEIKKAFHMLAKQYHPDANKNNPS-------AKRKFQEIRDAYETL  135 (403)
Q Consensus        89 gv~~~as~~eIk~ayr~la~~~HPD~~~~~~~-------a~~~f~~i~~Ay~vL  135 (403)
                      .+..=.+.++|||+|||..+..||||.+..+.       +++.|..+++||+.-
T Consensus       395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            34445688999999999999999999876532       566677777777643

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.95  E-value=0.024  Score=54.84  Aligned_cols=38  Identities=45%  Similarity=1.078  Sum_probs=30.5

Q ss_pred             ceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEee
Q 015636          228 AFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (403)
                      ....|.-|+|.|      ...|++|.|.|..       +|.+|.|.|....
T Consensus       233 t~~~C~~C~G~G------~~~C~tC~grG~k-------~C~TC~gtgsll~  270 (406)
T KOG2813|consen  233 THDLCYMCHGRG------IKECHTCKGRGKK-------PCTTCSGTGSLLN  270 (406)
T ss_pred             ccchhhhccCCC------cccCCcccCCCCc-------ccccccCccceee
Confidence            345677777777      4579999999976       8999999998654

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.02  E-value=0.19  Score=49.06  Aligned_cols=90  Identities=20%  Similarity=0.349  Sum_probs=58.1

Q ss_pred             eccccceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEE
Q 015636          223 HVSFDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVK  297 (403)
Q Consensus       223 ~v~~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~  297 (403)
                      .........|..|.|.|....     -...+|..|.|.|.+    ....|..|.|.|.+...+-.....+..+....+|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~----~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~  250 (288)
T KOG0715|consen  175 AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLV----LRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLR  250 (288)
T ss_pred             cccccccccchhhhCcccccccccCCcceeeccccccccee----ccchHHHhhcchhhhhheeEEeecCcccccccEEE
Confidence            334567789999999993221     112379999999998    55569999999977766666666664444444555


Q ss_pred             EEeCCCCCCCCEEEEcCCccC
Q 015636          298 VTIPAGVDSGDTIRVPEAGNA  318 (403)
Q Consensus       298 V~Ip~G~~~G~~i~l~g~G~~  318 (403)
                      +..+...  .-.+++.=...+
T Consensus       251 ~~~~~~~--~l~v~~~v~~~~  269 (288)
T KOG0715|consen  251 FAGHGND--DLFVRLIVAKSP  269 (288)
T ss_pred             EecCCcc--eEEEEEEeccCc
Confidence            5544433  333444433433

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=92.48  E-value=0.33  Score=41.43  Aligned_cols=60  Identities=23%  Similarity=0.272  Sum_probs=41.2

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhh
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA  142 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~  142 (403)
                      +....-..||+|++..+.++|.+.|.+|-...+|++.++ .   =.=.+|..|.|.|....+..
T Consensus        55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS-f---YLQSKV~rAKErl~~El~~~  114 (127)
T PF03656_consen   55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS-F---YLQSKVFRAKERLEQELKEE  114 (127)
T ss_dssp             --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS--H---HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC-H---HHHHHHHHHHHHHHHHHHHH
Confidence            334567899999999999999999999999999998764 1   11136888999998666443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=85.22  E-value=2.4  Score=38.90  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=31.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHH-hhhh
Q 015636           91 PENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYET-LRDS  138 (403)
Q Consensus        91 ~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~v-L~dp  138 (403)
                      +++||.+||.+|+.++..+|-     +|   ++.-.+|..|||. |++.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~-----gd---~~~~~~IEaAYD~ILM~r   41 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYA-----GD---EKSREAIEAAYDAILMER   41 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhc-----CC---HHHHHHHHHHHHHHHHHH
Confidence            479999999999999999983     23   3455679999995 4444

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.29  E-value=0.74  Score=44.11  Aligned_cols=41  Identities=32%  Similarity=0.622  Sum_probs=25.0

Q ss_pred             eecccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEE
Q 015636          230 VPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRI  276 (403)
Q Consensus       230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~  276 (403)
                      -.|..|.|-++.      .|..|+|+=++...    ..-.+|..|+-.|-+
T Consensus       230 ~~C~~CGg~rFl------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv  274 (281)
T KOG2824|consen  230 GVCESCGGARFL------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV  274 (281)
T ss_pred             CcCCCcCCcceE------ecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence            457777776653      57777777766431    113467777777765

>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1

Probab=83.23  E-value=1.5  Score=39.04  Aligned_cols=20  Identities=30%  Similarity=0.393  Sum_probs=16.2

Q ss_pred             EEEEEeCCCCCCCCEEEEcC
Q 015636          295 EVKVTIPAGVDSGDTIRVPE  314 (403)
Q Consensus       295 ~l~V~Ip~G~~~G~~i~l~g  314 (403)
                      .+.++||||...|..-.+.|
T Consensus        81 El~~ei~pg~~~g~itTVEG  100 (160)
T smart00709       81 ELDLEIPPGPLGGFITTVEG  100 (160)
T ss_pred             eeeEEecCCCCCcEEEehHH
Confidence            67788888888888888865

Also present in archaeal proteins.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=81.64  E-value=3.4  Score=34.50  Aligned_cols=46  Identities=17%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCChh----HHHHHHHHHHHHHHhhh
Q 015636           92 ENASQDEIKKAFHMLAKQYHPDANKNNPS----AKRKFQEIRDAYETLRD  137 (403)
Q Consensus        92 ~~as~~eIk~ayr~la~~~HPD~~~~~~~----a~~~f~~i~~Ay~vL~d  137 (403)
                      +..+..+++.|.|.+-++.|||.....|+    .++-++.++.-.+.|..
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~   53 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK   53 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence            45567789999999999999998887775    34456777766666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		1e-17
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		6e-17
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		9e-15
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-14
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-14
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-14
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-12
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-12
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		4e-12
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		7e-12
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		1e-11
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		3e-11
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		5e-11
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		6e-11
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		2e-10
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-09
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-09
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		2e-09
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		8e-09
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		1e-08
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		2e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		3e-07
2ctt_A	104	Solution Structure Of Zinc Finger Domain From Human		3e-07
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		1e-06
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		1e-06
1exk_A	79	Solution Structure Of The Cysteine-Rich Domain Of T		6e-06
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		2e-05
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		1e-04
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		3e-04

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D Y++LGVP NASQ EIKKA++ LAK+YHPD NK++P AK KF ++ +AYE L D  KR 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 143 QYD 145
           QYD
Sbjct: 68  QYD 70

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 127/329 (38%), Gaps = 93/329 (28%)
Query: 58  DFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN 117
           D GT  ++     +          +D Y +LGV        IK A+  LA++YHPD +K 
Sbjct: 12  DLGTENLYFQSNAMEL--------KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE 63
Query: 118 NPSAKRKFQEIRDAYETLRDSEKRAQYDRR----------RSRGSENEKYSAGDAEGFRY 167
           N  A+ KF+++ +A+E L+D ++RA+YD+           R R +  + YS  D      
Sbjct: 64  N-DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQD------ 116
Query: 168 AGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAP---DIQVELVLSFAEAAKGCTKHV 224
                         F D F  +F +         A    D+++E+ +   E     T+ +
Sbjct: 117 --------------FDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTI 162
Query: 225 SFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTC 284
           S++  +P  +  G                               T K L           
Sbjct: 163 SYN--LPVYNVFG--------------------------MIESETPKTLN---------- 184
Query: 285 KGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDG 344
                        V IPAGV  G  IR+   G  G  G  +G+L++ + +A  P+F   G
Sbjct: 185 -------------VKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVG 231
Query: 345 ADVYVDSNISFTQAILGGKVDVPTLSGKV 373
            ++ +   ++  +A LG KV VPTL   +
Sbjct: 232 HNLEIVLPLAPWEAALGAKVTVPTLKESI 260

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y++LGVP++AS+ +IKKAFH LA +YHPD NK +P A+ KF+EI +AYETL D+ +R +Y
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 145 D 145
           D
Sbjct: 69  D 69

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 140 KRAQYDR 146
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 140 KRAQYDR 146
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 140 KRAQYDR 146
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y LLGV + AS  EI++AF  LA + HPD N NNP+A   F +I  AYE L+D + R +Y
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 145 DRRRSRGSENEKYSAGDAEGFRY 167
           D+   +G E+ +   G  E + Y
Sbjct: 84  DKYGEKGLEDNQ--GGQYESWSY 104

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           DPY +LGV   ASQ +IKKA+  LA+++HPD NK +P A+ +F +I  AYE L + EKR 
Sbjct: 18  DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRT 76
Query: 143 QYD 145
            YD
Sbjct: 77  NYD 79

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y LLGV + AS  EI++AF  LA + HPD N NNP+A   F +I  AYE L+D + R +Y
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 145 DRRRSRGSENEKYSAGDAEGFRY 167
           D+   +G E+ +   G  E + Y
Sbjct: 65  DKYGEKGLEDNQ--GGQYESWSY 85

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 76  SCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETL 135
           S  +S    Y +LG+ +NA+ D+IKK++  LA +YHPD N +NP A  KF+EI +A+  L
Sbjct: 11  SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
Query: 136 RDSEKRAQYDRRRSRG 151
            D+ KR  YD+  S G
Sbjct: 71  TDATKRNIYDKYGSLG 86

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRDSEKRAQ 143
           YE+L VP +AS D+IKKA+   A Q+HPD N +N   A++KF+E+ +AYE L D  KR  
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 144 YDR 146
           YDR
Sbjct: 65  YDR 67

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y++LGV  NA+Q+E+KKA+  LA +YHPD    NP+   KF++I  AYE L D++KR  Y
Sbjct: 9   YDVLGVKPNATQEELKKAYRKLALKYHPD---KNPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 145 DR 146
           D+
Sbjct: 66  DK 67

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDAN-KNNPSAKRKFQEIRDAYETLRDSEKR 141
           D YE+L VP  AS + IKKA+  LA ++HPD N +N   A+R+F+++ +AYE L D++KR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 142 AQYDR 146
             YDR
Sbjct: 70  DIYDR 74

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQ 143
           YE+LGV  +AS ++IKKA+  LA ++HPD N +N   A++KF+ + +AYE L DS+KR+ 
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 144 YDR 146
           YDR
Sbjct: 72  YDR 74

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 16/180 (8%)
Query: 204 DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC--RGIGRVT-- 259
           DI+ E+  S  E  KG T  ++ +  + C  C GRG    A  K C++C  +GI  VT  
Sbjct: 13  DIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQ 71
Query: 260 ----IPPFTSTCSTCKGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVP 313
               I  F + C  C G G II  KD C +C G  V +  K ++V +  G+  G  I   
Sbjct: 72  MGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFK 131
Query: 314 EAGNAGGRGRQHGNLFIKLKVADDP--IFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
              +          +FI   V++ P   F RDG D+  ++ I    AI GG+  +  +SG
Sbjct: 132 GEADQAPDVIPGDVVFI---VSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSG 188

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           +D Y+ LG+   AS +EIK+A+   A +YHPD NK  P A+ KF+EI +AY+ L D  KR
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 142 AQYDR 146
             +DR
Sbjct: 62  EIFDR 66

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           S  +D Y ++GV        IK A+  LA++YHPD +K  P A+ +F+E+ +A+E L D 
Sbjct: 2   SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDE 60
Query: 139 EKRAQYDR 146
           ++RA+YD+
Sbjct: 61  QRRAEYDQ 68

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S  D YE+LGV   AS +++KKA+  LA ++HPD N + P A   F+ I  AY  L + E
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPE 63
Query: 140 KRAQYDR 146
           KR QYD+
Sbjct: 64  KRKQYDQ 70

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y++LGV  +AS +E+KKA+  +A ++HPD    NP    +F++I  AYE L D +KR  Y
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPD---KNPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 145 DR 146
           D+
Sbjct: 68  DQ 69

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 75  GSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYET 134
           G C  S+   Y+LLGVP  A+Q +IK A++     YHPD N  +  A  +F  I  AY  
Sbjct: 10  GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVV 69
Query: 135 LRDSEKRAQYDR 146
           L  +  R +YDR
Sbjct: 70  LGSATLRRKYDR 81

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D Y LLG  E +S ++I   F + A + HPD +  NP A   FQ+++ A E L + E RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 143 QYDR-RRSRGS 152
           +YD  RRS+ S
Sbjct: 81  RYDHWRRSQMS 91

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y+LLGV  +A++ E+KK +   A +YHPD    +     KF+EI +A+E L D +KR  Y
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIY 67
Query: 145 DR 146
           D+
Sbjct: 68  DQ 69

>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 Length = 104

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 209 LVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTI--PPFT-- 264
           + L+F +AAKG  K  + +    C+ C+G+G     K + C  C G G  TI   PF   
Sbjct: 8   MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMR 67
Query: 265 STCSTCKGLGRIIKDHCMTCKGSG 288
           STC  C G G II   C+ C+G+G
Sbjct: 68  STCRRCGGRGSIIISPCVVCRGAG 91

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETL 135
           S KRD Y++LGV  NA + EI KA+  LA Q+HPD  +N      A++KF +I  A E L
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
Query: 136 RDSEKRAQYD 145
            D E R ++D
Sbjct: 439 SDPEXRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETL 135
           S KRD Y++LGV  NA + EI KA+  LA Q+HPD  +N      A++KF +I  A E L
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
Query: 136 RDSEKRAQYD 145
            D E R ++D
Sbjct: 439 SDPEMRKKFD 448

>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The Escherichia Coli Chaperone Protein Dnaj Length = 79

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 221 TKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRI 276
           TK +       CD CHG G     + + C TC G G+V +         TC  C+G G +
Sbjct: 3   TKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL 62
Query: 277 IKDHCMTCKGSGVVD 291
           IKD C  C G G V+
Sbjct: 63  IKDPCNKCHGHGRVE 77

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 78  YSSKRDPYELLGVP-ENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYE 133
           Y    + Y++L V  E   + ++ KA+  LA+++HPD  KN      A+ +F+ I  AYE
Sbjct: 11  YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70
Query: 134 TLRDSEKRAQYD 145
           TL+D E +  YD
Sbjct: 71  TLKDDEAKTNYD 82

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 60  GTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP 119
           G++GM L +          + K+D Y +LG   +A+  ++K+ +  L   YHPD    + 
Sbjct: 4   GSSGMALEQ----------TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADV 53
Query: 120 SA------KRKFQEIRDAYETLRDSEKRAQYDRRRS 149
            A       +KF EI  A++ L + E + +YD +RS
Sbjct: 54  PAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSA------KRKFQEIRDAYET 134
           K+D Y +LG   +A+  ++K+ +  L   YHPD    +  A       +KF EI  A++ 
Sbjct: 9   KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 135 LRDSEKRAQYDRRR 148
           L + E + +YD +R
Sbjct: 69  LGNEETKREYDLQR 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-76
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	5e-52
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-33
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	4e-33
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	6e-33
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	9e-33
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-31
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	9e-31
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-30
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-30
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-30
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	5e-30
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-30
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-29
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-29
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	6e-29
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-28
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	3e-28
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	6e-28
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-27
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	6e-27
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	1e-25
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	1e-24
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	3e-24
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	6e-24
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	6e-24
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	8e-24
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-22
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	7e-20
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-19
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	3e-18
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	1e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-17
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	1e-16
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	2e-14
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	9e-04
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	7e-14
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-13
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-13
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-10
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	2e-09
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-08
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	1e-06

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  239 bits (611), Expect = 2e-76
 Identities = 71/309 (22%), Positives = 121/309 (39%), Gaps = 81/309 (26%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             +D Y +LGV        IK A+  LA++YHPD +K    A+ KF+++ +A+E L+D +
Sbjct: 26  ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQ 84

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           +RA+YD+                       +  GF    QTH      + F +IF     
Sbjct: 85  RRAEYDQ------------------LWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFG 126

Query: 197 --------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKI 248
                   + +    D+++E+ +   E     T+ +S++  +P  +  G       KT  
Sbjct: 127 QQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYN--LPVYNVFGMIESETPKT-- 182

Query: 249 CSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
                                                          + V IPAGV  G 
Sbjct: 183 -----------------------------------------------LNVKIPAGVVDGQ 195

Query: 309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
            IR+   G  G  G  +G+L++ + +A  P+F   G ++ +   ++  +A LG KV VPT
Sbjct: 196 RIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPT 255

Query: 369 LSGKVQVKV 377
           L   + + V
Sbjct: 256 LKESILLTV 264

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  173 bits (440), Expect = 5e-52
 Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 203 PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVT--- 259
            DI+ E+  S  E  KG T  ++ +  + C  C GRG    A  K C++C G G      
Sbjct: 12  KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKK-CTSCNGQGIKFVTR 70

Query: 260 -IPP----FTSTCSTCKGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRV 312
            + P    F + C  C G G II  KD C +C G  V +  K ++V +  G+  G  I  
Sbjct: 71  QMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130

Query: 313 PEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK 372
               +        G++   +       F RDG D+  ++ I    AI GG+  +  +SG 
Sbjct: 131 KGEADQA-PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGD 189

Query: 373 -VQVKV 377
            ++V +
Sbjct: 190 WLKVGI 195

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  120 bits (302), Expect = 1e-33
 Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 14/115 (12%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF 194
           KRA YD+      E          GF    D           FSD F  +F +IF
Sbjct: 61  KRAAYDQYGHAAFEQ---GGMGGGGFGGGAD-----------FSDIFGDVFGDIF 101

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  118 bits (297), Expect = 4e-33
 Identities = 40/67 (59%), Positives = 50/67 (74%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S  D Y++LGVP NASQ EIKKA++ LAK+YHPD NK++P AK KF ++ +AYE L D  
Sbjct: 5   SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEV 64

Query: 140 KRAQYDR 146
           KR QYD 
Sbjct: 65  KRKQYDA 71

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  118 bits (298), Expect = 6e-33
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
               D Y LLG  E +S ++I   F + A + HPD +  NP A   FQ+++ A E L + 
Sbjct: 17  EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNE 76

Query: 139 EKRAQYDR-RRSRGSENEKYSAGDAEGFRYAGDAEG 173
           E RA+YD  RRS+ S   +      +  + +G + G
Sbjct: 77  ESRARYDHWRRSQMSMPFQQWEALNDSVKTSGPSSG 112

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  117 bits (296), Expect = 9e-33
 Identities = 31/92 (33%), Positives = 45/92 (48%)

Query: 73  ATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAY 132
           + G C  S+   Y+LLGVP  A+Q +IK A++     YHPD N  +  A  +F  I  AY
Sbjct: 8   SQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAY 67

Query: 133 ETLRDSEKRAQYDRRRSRGSENEKYSAGDAEG 164
             L  +  R +YDR      +     +G + G
Sbjct: 68  VVLGSATLRRKYDRGLLSDEDLRGPGSGPSSG 99

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  118 bits (296), Expect = 2e-31
 Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           ++ Y LLGV + AS  EI++AF  LA + HPD N NNP+A   F +I  AYE L+D + R
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 142 AQYDR--------RRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEI 193
            +YD+         +    E+  Y   D   +    +             +S    F   
Sbjct: 62  KKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNF 121

Query: 194 FEDETSH---FAPDIQVELVLSFAEAAKGCTKHVSF 226
           +    SH    AP        ++ E AK     +  
Sbjct: 122 YSPGCSHCHDLAP--------TWREFAKEVDGLLRI 149

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  112 bits (283), Expect = 9e-31
 Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S    Y +LG+ +NA+ D+IKK++  LA +YHPD N +NP A  KF+EI +A+  L D+ 
Sbjct: 15  SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74

Query: 140 KRAQYDRRRSRG-SENEKYSAGDAEGFRYAGDAEG 173
           KR  YD+  S G    E++   +   +  +G + G
Sbjct: 75  KRNIYDKYGSLGLYVAEQFGEENVNTYFVSGPSSG 109

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  114 bits (286), Expect = 1e-30
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 38/164 (23%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS------AKRKFQEIRDAY 132
             K+D Y +LG   +A+  ++K+ +  L   YHPD    +          +KF EI  A+
Sbjct: 7   MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAW 66

Query: 133 ETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFR-YAGDAEGFRYAYQTHFSDSFHKIFS 191
           + L + E + +YD +R                    + +     +         +     
Sbjct: 67  KILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKY----- 121

Query: 192 EIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSC 235
            + +DE                              + + CD+C
Sbjct: 122 SVSKDE--------------------------AEEVSLISCDTC 139

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  112 bits (281), Expect = 1e-30
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           +   DPY +LGV   ASQ +IKKA+  LA+++HPD NK +P A+ +F +I  AYE L + 
Sbjct: 14  ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNE 72

Query: 139 EKRAQYDR 146
           EKR  YD 
Sbjct: 73  EKRTNYDH 80

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  110 bits (278), Expect = 3e-30
 Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S    Y++LGVP++AS+ +IKKAFH LA +YHPD NK +P A+ KF+EI +AYETL D+ 
Sbjct: 5   SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDAN 63

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEG 164
           +R +YD        + K  +G + G
Sbjct: 64  RRKEYDTLGHSAFTSGKGQSGPSSG 88

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  110 bits (276), Expect = 5e-30
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S  D YE+LGV   AS +++KKA+  LA ++HPD N   P A   F+ I  AY  L + E
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPE 63

Query: 140 KRAQYDR 146
           KR QYD+
Sbjct: 64  KRKQYDQ 70

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  120 bits (302), Expect = 8e-30
 Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 17/175 (9%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             ++ Y LLGV + AS  EI++AF  LA + HPD N NNP+A   F +I  AYE L+D +
Sbjct: 19  HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDED 78

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
            R +YD+    G +  + + G           +   Y           + F         
Sbjct: 79  LRKKYDK---YGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGEL 135

Query: 200 H----FAP--DIQVELVLSFAEAAKGCTKHVSFDAFVPCDS----CHG---RGFP 241
                ++P      +L  ++ E AK     +     V C      C       +P
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRI-GAVNCGDDRMLCRMKGVNSYP 189

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  108 bits (272), Expect = 2e-29
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRD 137
           S   D YE+L VP  AS + IKKA+  LA ++HPD N  N   A+R+F+++ +AYE L D
Sbjct: 6   SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65

Query: 138 SEKRAQYDR 146
           ++KR  YDR
Sbjct: 66  AKKRDIYDR 74

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  108 bits (273), Expect = 2e-29
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEK 140
              YE+L VP +AS D+IKKA+   A Q+HPD N +N   A++KF+E+ +AYE L D  K
Sbjct: 2   ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTH 181
           R  YDR    G E    +              G  + +  H
Sbjct: 62  REIYDR---YGREGLTGTGTGPSRAEAGSGGPGLEHHHHHH 99

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  107 bits (269), Expect = 6e-29
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRD 137
           S   + YE+LGV  +AS ++IKKA+  LA ++HPD N +N   A++KF+ + +AYE L D
Sbjct: 6   SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65

Query: 138 SEKRAQYDRRRSRGSENEKYSAGDAEG 164
           S+KR+ YDR           ++G + G
Sbjct: 66  SKKRSLYDRAGCDSWRAGGGASGPSSG 92

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  107 bits (268), Expect = 1e-28
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 78  YSSKRDPYELLGVPENA-SQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYE 133
           Y    + Y++L V      + ++ KA+  LA+++HPD  KN      A+ +F+ I  AYE
Sbjct: 11  YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70

Query: 134 TLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRY 167
           TL+D E +  YD         ++      + +R 
Sbjct: 71  TLKDDEAKTNYDY---YLDHPDQRFYNYYQYYRL 101

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  105 bits (264), Expect = 3e-28
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS------AKRKFQEIRDAY 132
           + K+D Y +LG   +A+  ++K+ +  L   YHPD    +          +KF EI  A+
Sbjct: 13  TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 133 ETLRDSEKRAQYDRRRSRGSE 153
           + L + E + +YD +RS  S 
Sbjct: 73  KILGNEETKKKYDLQRSGPSS 93

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  104 bits (261), Expect = 6e-28
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
            +D Y+ LG+   AS +EIK+A+   A +YHPD NK  P A+ KF+EI +AY+ L D  K
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60

Query: 141 RAQYDR 146
           R  +DR
Sbjct: 61  REIFDR 66

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  102 bits (256), Expect = 3e-27
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
            +   Y++LGV  +AS +E+KKA+  +A ++HPD    NP    +F++I  AYE L D +
Sbjct: 6   KETGYYDVLGVKPDASDNELKKAYRKMALKFHPD---KNPDGAEQFKQISQAYEVLSDEK 62

Query: 140 KRAQYDR 146
           KR  YD+
Sbjct: 63  KRQIYDQ 69

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  102 bits (255), Expect = 6e-27
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
            +   Y+LLGV  +A++ E+KK +   A +YHPD          KF+EI +A+E L D +
Sbjct: 6   KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQ 62

Query: 140 KRAQYDR 146
           KR  YD+
Sbjct: 63  KREIYDQ 69

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  101 bits (253), Expect = 1e-25
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 270 CKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLF 329
             G  + IK          V +    V+V I  G   G  +     G+    G   G+L 
Sbjct: 18  YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77

Query: 330 IKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKV 377
           + ++    P F+RD   + +   I   +A+ G    V TL    +Q+ +
Sbjct: 78  LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPI 126

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 96.5 bits (241), Expect = 1e-24
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 204 DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP-- 261
                + L+F +AAKG  K  + +    C+ C+G+G     K + C  C G G  TI   
Sbjct: 3   SGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTG 62

Query: 262 PFT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVT 299
           PF   STC  C G G II   C+ C+G+G     K    +
Sbjct: 63  PFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 270 CKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLF 329
             G  +  K   +  KG        ++ + +  G  +G  I     G+   +  +   L 
Sbjct: 15  FVGKKKSFK---IGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71

Query: 330 IKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKV 377
             ++    P F RDG D+     +SF +++LG    + T+ G  + +  
Sbjct: 72  FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSR 120

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 96.5 bits (240), Expect = 6e-24
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 79  SSKRDPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR 136
                  +LLG+  +A  +   ++KA+    K++HPD   +    + K +++   Y+ + 
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKME 63

Query: 137 DSEKRAQYDRRRSRGSENEKYSAGDAEGF 165
           D  K A            E +++    G 
Sbjct: 64  DGVKYAHQPDFGGFWDATEVFASSLNPGV 92

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 93.6 bits (233), Expect = 6e-24
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRD 137
           S  ++   ++       + E KK    L  ++HPD N  N   A   F+ +++    L  
Sbjct: 13  SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL-- 70

Query: 138 SEKRAQYDRRRSRGSE 153
            EK+A  D+   R S 
Sbjct: 71  -EKQAFLDQNADRASR 85

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 93.6 bits (233), Expect = 8e-24
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           + +D +++LGV   AS+DE+ KA+  LA   HPD     P ++  F+ + +A   L  + 
Sbjct: 25  NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNI 83

Query: 140 KRAQYD 145
           K     
Sbjct: 84  KSGPSS 89

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 90.3 bits (224), Expect = 2e-22
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 79  SSKRDPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR 136
                  +LLG+  +A  +   ++KA+    K++HPD   +    + K +++   Y+ + 
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKME 60

Query: 137 DSEKRAQYDRRRSRGSENEKYSAGDAE 163
           D  K A            E  + G  E
Sbjct: 61  DGVKYAHQPDFGGFWDATEIPTYGTDE 87

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score = 85.4 bits (212), Expect = 7e-20
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 270 CKGLGRIIK--DHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGN 327
             G  + +K     +   G  + +  K + + +  G   G  I  P+ G+         +
Sbjct: 17  YSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQT-SNNIPAD 75

Query: 328 LFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK 372
           +   LK     IF RDG+DV   + IS  +A+ G  V+VPTL G+
Sbjct: 76  IVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGR 120

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 80.8 bits (199), Expect = 3e-18
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 83  DPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETL 135
           D + L G+P     D   +   F  L +QYHPD   +        A ++   I  A++TL
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 136 RDSEKRAQYDRR 147
           R    RA+Y   
Sbjct: 62  RHPLMRAEYLLS 73

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 219 GCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLG 274
           G TK +       CD CHG G     + + C TC G G+V +         TC  C+G G
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60

Query: 275 RIIKDHCMTCKGSGVV 290
            +IKD C  C G G V
Sbjct: 61  TLIKDPCNKCHGHGRV 76

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETL 135
           S KRD Y++LGV  NA + EI KA+  LA Q+HPD  +N      A++KF +I  A E L
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

Query: 136 RDSEKRAQYDR 146
            D E R ++D 
Sbjct: 439 SDPEMRKKFDD 449

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 76.6 bits (188), Expect = 1e-16
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 79  SSKRDPYELLGVPE-------NASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDA 131
                 YEL               Q  ++K +  L  Q+HPD  +       +   +  A
Sbjct: 8   RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQA 64

Query: 132 YETLRDSEKRAQYDRRRSRGSE 153
           Y TL+D  +R+QY  +  R  +
Sbjct: 65  YHTLKDPLRRSQYMLKLLRNID 86

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 338 PIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKV 377
           P+F   G ++ +   ++  +A LG KV VPTL   + + V
Sbjct: 5   PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTV 44

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 291 DGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVA 335
                + +T+P G  +G  +R+   G         G+LF  +K+ 
Sbjct: 37  KE--SILLTVPPGSQAGQRLRIKGKGLVSKTHT--GDLFAVIKIV 77

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 68.7 bits (167), Expect = 7e-14
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRDSEKR 141
           ++ +G+ +  + +++KK +       HPD     P    AK  F E+ DA+    +  ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179

Query: 142 AQY 144
             Y
Sbjct: 180 PLY 182

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 79  SSKRDPYELLGVPE--NASQDEIKKAFHMLAKQYHPDANKNNPSAKR-----KFQEIRDA 131
              RD + L+           +++  +  L +  HPD        ++         + DA
Sbjct: 40  DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDA 99

Query: 132 YETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGF 165
           Y+TL     R  Y  +       E+        F
Sbjct: 100 YKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQF 133

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 79  SSKRDPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR 136
           + K    ELL +P     D   +++A+   +   HPD   ++       QE+   + T +
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH----ALMQELNSLWGTFK 63

Query: 137 DSEKRAQYDRRRS 149
                 + +   +
Sbjct: 64  TEVYNLRMNLGGT 76

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 80  SKRDPYELLGVPENA-SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           + ++  ++L + EN  ++ ++K+    +    HPD   +         +I +A + L   
Sbjct: 12  NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP----FLATKINEAKDFLEKR 67

Query: 139 EKR 141
              
Sbjct: 68  GIS 70

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 53.5 bits (128), Expect = 2e-09
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRD 137
           ++ +G+ +  + +++KK +       HP      P    AK  F E+ DA+    +
Sbjct: 36  WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 7/61 (11%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-------AKRKFQEIRDAYETLRD 137
           ++ + + +    + ++K++       HPD  +   +       A++ F+ +++A++    
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102

Query: 138 S 138
            
Sbjct: 103 L 103

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 340 FSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKV 377
           F RDG D+  ++ I    AI GG+  +  +SG  ++V +
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGI 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	99.96
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	99.96
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	99.94
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.86
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.86
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.84
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.84
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.83
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.83
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.83
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.83
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.82
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.82
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.82
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.81
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.81
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.8
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.8
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.76
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.76
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.74
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.73
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.73
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.72
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.71
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.69
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.69
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.68
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.67
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.66
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.65
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.63
2guz_A	71	Mitochondrial import inner membrane translocase su	99.62
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.59
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.59
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.58
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.56
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.28
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.15
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.01
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	98.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.92
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	98.86
2guz_B	65	Mitochondrial import inner membrane translocase su	98.75
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.74
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.66
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.55
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.39
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.92
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.88
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	97.4
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.17
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.07
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.9
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	95.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	87.88

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=4.3e-51  Score=400.88  Aligned_cols=236  Identities=28%  Similarity=0.504  Sum_probs=113.4

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCccccCC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYS  158 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~~~~~~  158 (403)
                      +...|||+||||+++|+.+|||+|||+||++||||++++ +.|+++|++|++||++|+||.+|+.||+++..+... .++
T Consensus        25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~-~~~  102 (329)
T 3lz8_A           25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDP-GFG  102 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCC-Ccc
Confidence            445799999999999999999999999999999999985 578899999999999999999999999984321100 000


Q ss_pred             CCCCCCCcccCCCCcceeccccccccchhhhhhhhhcc-------ccCCCCCCceEEEEEeeeccccCcceeccccceee
Q 015636          159 AGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (403)
Q Consensus       159 ~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~F~~~f~~-------~~~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~  231 (403)
                          .++...  +.+|.       +.+|.++|+++|++       ....+|.|++++|.|+|+|+|.|+++++.+.+.+.
T Consensus       103 ----~~~~~~--~~~f~-------~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~  169 (329)
T 3lz8_A          103 ----RQRQTH--EQSYS-------QQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVY  169 (329)
T ss_dssp             -----------------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEEC
T ss_pred             ----cccccc--cCCcC-------CCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEee
Confidence                001000  01110       01244556666643       12457899999999999999999999999877653


Q ss_pred             cccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEEeeceEEeceEEEEEEeCCCCCCCCEEE
Q 015636          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR  311 (403)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~  311 (403)
                      |    |.|                 ++                              .+...+.++|+||||+++|++|+
T Consensus       170 ~----g~G-----------------~v------------------------------~~~~~~~l~V~IP~Gv~~G~~Ir  198 (329)
T 3lz8_A          170 N----VFG-----------------MI------------------------------ESETPKTLNVKIPAGVVDGQRIR  198 (329)
T ss_dssp             C----SCC------------------C------------------------------CEEEEEEEEEEECTTCCTTCEEE
T ss_pred             c----CCe-----------------EE------------------------------EEecceEEEEeCCCCCCCCCEEE
Confidence            2    222                 11                              12235689999999999999999


Q ss_pred             EcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       312 l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      |+|+|++..+++.+|||||+|+|+||+.|+|+|+||+++++|+|+|||||++++|+||||++.|+||++
T Consensus       199 l~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~g  267 (329)
T 3lz8_A          199 LKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPG  267 (329)
T ss_dssp             ESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTT
T ss_pred             EcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCC
Confidence            999999987778899999999999999999999999999999999999999999999999999999985

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=1.5e-43  Score=335.16  Aligned_cols=190  Identities=27%  Similarity=0.509  Sum_probs=172.4

Q ss_pred             CCCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcC
Q 015636          199 SHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTC  270 (403)
Q Consensus       199 ~~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C  270 (403)
                      ..+|+|++++|.|||||||+|+++++.+.+.+.|+.|+|+|...+. ..+|+.|+|+|++...        +++.+|+.|
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C   86 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVC   86 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTC
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCC
Confidence            3578999999999999999999999999999999999999998877 4899999999976321        247899999


Q ss_pred             CCCcEEe--eeeeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEE
Q 015636          271 KGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY  348 (403)
Q Consensus       271 ~G~G~~~--~~~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~  348 (403)
                      +|.|+++  +++|..|.|.|++.+.+.++|.||||+++|++|+|+|+|++.+ ++.+|||||+|+++||+.|+|+|+|||
T Consensus        87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL~  165 (248)
T 1nlt_A           87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDLV  165 (248)
T ss_dssp             SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEEE
T ss_pred             CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEEE
Confidence            9999999  9999999999999999999999999999999999999999865 558999999999999999999999999


Q ss_pred             EEeecCHhhhhcCCeEEeeCCCCc-EEEEEcCC------Ceeeeeeeee
Q 015636          349 VDSNISFTQAILGGKVDVPTLSGK-VQVKVIVL------SLLLLLFYSL  390 (403)
Q Consensus       349 ~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~~------~~~~~~~~~~  390 (403)
                      ++++|+|+|||||++++|+||||+ +.|+||++      .++.|-..++
T Consensus       166 ~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gm  214 (248)
T 1nlt_A          166 YEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGM  214 (248)
T ss_dssp             EEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSC
T ss_pred             EEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCC
Confidence            999999999999999999999996 89999875      4455544444

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=99.96  E-value=6.2e-30  Score=230.83  Aligned_cols=138  Identities=26%  Similarity=0.384  Sum_probs=113.6

Q ss_pred             CCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeeee
Q 015636          202 APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHC  281 (403)
Q Consensus       202 g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C  281 (403)
                      ++|++++|.|||+|||+|+++++.+.+  .|+.|+|.|                                          
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~--~c~~c~G~g------------------------------------------   37 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISH--KRLNPDGKS------------------------------------------   37 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEE--EEECTTSSC------------------------------------------
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEec--ccCCCCCce------------------------------------------
Confidence            468999999999999999999987643  233333322                                          


Q ss_pred             eEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcC
Q 015636          282 MTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILG  361 (403)
Q Consensus       282 ~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG  361 (403)
                             ++.+.+.++|.||||+++|++|+|+|+|++.. ++.+|||||+|+++||+.|+|+|+||+++++|+|+||++|
T Consensus        38 -------~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG  109 (181)
T 3agx_A           38 -------IRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCG  109 (181)
T ss_dssp             -------EEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHC
T ss_pred             -------EEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHHHhCC
Confidence                   23567899999999999999999999999976 5689999999999999999999999999999999999999


Q ss_pred             CeEEeeCCCCc-EEEEEcC----CCeeeeeeeeee
Q 015636          362 GKVDVPTLSGK-VQVKVIV----LSLLLLLFYSLI  391 (403)
Q Consensus       362 ~~~~I~tldG~-~~l~ip~----~~~~~~~~~~~~  391 (403)
                      ++++|+||||+ +.|+||+    +..+.|-..++-
T Consensus       110 ~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp  144 (181)
T 3agx_A          110 CTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLP  144 (181)
T ss_dssp             EEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCB
T ss_pred             CEEEeECCCCCEEEEECCCccCCCcEEEECCcCCC
Confidence            99999999995 8888884    445555555543

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=7e-29  Score=223.80  Aligned_cols=138  Identities=19%  Similarity=0.282  Sum_probs=119.8

Q ss_pred             CCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeee
Q 015636          201 FAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDH  280 (403)
Q Consensus       201 ~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~  280 (403)
                      ++.|++++|.|||+|||+|+++++.+.+.+.|+.                                              
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------   35 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------   35 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence            4789999999999999999999999998888741                                              


Q ss_pred             eeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhc
Q 015636          281 CMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAIL  360 (403)
Q Consensus       281 C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAll  360 (403)
                             |++.+.+.++|.||||+++|++|+|+|+|+++.+++.+|||||+|+++||+.|+|+|+||+++++|+|+||++
T Consensus        36 -------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAll  108 (180)
T 2q2g_A           36 -------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALT  108 (180)
T ss_dssp             -------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHH
T ss_pred             -------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhC
Confidence                   2345678999999999999999999999999656788999999999999999999999999999999999999


Q ss_pred             CCeEEeeCCCCc-EEEEEcC----CCeeeeeeeeee
Q 015636          361 GGKVDVPTLSGK-VQVKVIV----LSLLLLLFYSLI  391 (403)
Q Consensus       361 G~~~~I~tldG~-~~l~ip~----~~~~~~~~~~~~  391 (403)
                      |++++|+||||+ +.|+||.    +..+.|--.++-
T Consensus       109 G~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp  144 (180)
T 2q2g_A          109 GFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMP  144 (180)
T ss_dssp             CEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCB
T ss_pred             CCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCC
Confidence            999999999995 8888875    344555544443

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=99.94  E-value=3.1e-27  Score=211.08  Aligned_cols=133  Identities=18%  Similarity=0.278  Sum_probs=114.9

Q ss_pred             CCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeee
Q 015636          203 PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCM  282 (403)
Q Consensus       203 ~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~  282 (403)
                      +|++++|.|||+|||+|+++++.+.+..      +                                             
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~------~---------------------------------------------   29 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG------P---------------------------------------------   29 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE------T---------------------------------------------
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEec------C---------------------------------------------
Confidence            4789999999999999999999986541      0                                             


Q ss_pred             EEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeCCeEEEEeecCHhhhhcCC
Q 015636          283 TCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGG  362 (403)
Q Consensus       283 ~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~  362 (403)
                          .|.+ +.+.++|.||||+++|++|+|+|+|++..+++.+|||||+|+++||+.|+|+|+||+++++|+|+||++|+
T Consensus        30 ----~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~  104 (170)
T 1c3g_A           30 ----HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGF  104 (170)
T ss_dssp             ----TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCE
T ss_pred             ----CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCC
Confidence                0123 46789999999999999999999999777788999999999999999999999999999999999999999


Q ss_pred             eEEeeCCCCc-EEEEEcC----CCeeeeeeeeee
Q 015636          363 KVDVPTLSGK-VQVKVIV----LSLLLLLFYSLI  391 (403)
Q Consensus       363 ~~~I~tldG~-~~l~ip~----~~~~~~~~~~~~  391 (403)
                      +++|+||||+ +.|+||+    +..+.|--.++-
T Consensus       105 ~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p  138 (170)
T 1c3g_A          105 SKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMP  138 (170)
T ss_dssp             EEEEECSSSCEEEEEESSCCCTTCEEECTTCSCB
T ss_pred             eEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCC
Confidence            9999999996 8999984    445555555543

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=7.8e-22  Score=153.89  Aligned_cols=73  Identities=56%  Similarity=0.853  Sum_probs=68.1

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      ....|||+||||+++|+.++||+|||+|++++|||++++++++.++|++|++||++|+||.+|+.||.++..+
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            3456999999999999999999999999999999999987889999999999999999999999999997544

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.86  E-value=1.8e-22  Score=165.54  Aligned_cols=73  Identities=49%  Similarity=0.802  Sum_probs=68.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCc
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~  153 (403)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++++++++++|++|++||++|+||.+|+.||.++..+..
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            4699999999999999999999999999999999987788999999999999999999999999999876543

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.84  E-value=3.1e-21  Score=149.77  Aligned_cols=71  Identities=45%  Similarity=0.776  Sum_probs=65.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~  152 (403)
                      ..|||+||||+++|+.++||+||++|++++|||++++ +.+.+.|++|++||++|+||.+|+.||.++..|.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            4699999999999999999999999999999999975 6788999999999999999999999999976553

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=2.8e-21  Score=157.30  Aligned_cols=72  Identities=39%  Similarity=0.638  Sum_probs=67.5

Q ss_pred             CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           77 CYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        77 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      ..++..|||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|+.||...
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            346678999999999999999999999999999999999888889999999999999999999999999964

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=5e-21  Score=152.46  Aligned_cols=72  Identities=51%  Similarity=0.858  Sum_probs=66.6

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      ....|||+||||+++|+.+|||+|||+|++++|||+++ ++.+.++|++|++||++|+||.+|+.||.++..+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            34569999999999999999999999999999999998 5788999999999999999999999999997544

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=5.1e-21  Score=150.34  Aligned_cols=73  Identities=47%  Similarity=0.734  Sum_probs=66.5

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      +...|||+||||+++|+.+|||+||++|++++|||+++.++ .+.++|++|++||++|+||.+|+.||.++..+
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   79 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP   79 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            34579999999999999999999999999999999998654 57889999999999999999999999997554

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=6.2e-21  Score=148.41  Aligned_cols=72  Identities=44%  Similarity=0.713  Sum_probs=66.3

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      ....|||+||||+++|+.+|||+||++|++++|||+++. +.+.++|++|++||++|+||.+|+.||.++..+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            345699999999999999999999999999999999974 778999999999999999999999999997544

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=151.59  Aligned_cols=74  Identities=45%  Similarity=0.710  Sum_probs=67.0

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhccccCC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~  152 (403)
                      ....|||+||||+++|+.+|||+|||+|++++|||+++.+. .++++|++|++||++|+||.+|+.||.++..+.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   80 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW   80 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            34569999999999999999999999999999999998653 688999999999999999999999999976543

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=7.2e-21  Score=158.36  Aligned_cols=73  Identities=37%  Similarity=0.574  Sum_probs=68.5

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      ....|||+||||+++|+.+|||+|||+|++++|||++++++++.++|++|++||++|+||.+|+.||+++..+
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~   89 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ   89 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence            4567999999999999999999999999999999999987889999999999999999999999999997654

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=1.6e-20  Score=149.58  Aligned_cols=70  Identities=49%  Similarity=0.811  Sum_probs=65.4

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Q 015636           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSR  150 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~  150 (403)
                      ...|||+||||+++|+.+|||+|||+|++++|||++++ +.+.++|++|++||++|+||.+|+.||.++..
T Consensus        15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            45699999999999999999999999999999999985 67889999999999999999999999999654

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=1.3e-20  Score=156.00  Aligned_cols=73  Identities=45%  Similarity=0.735  Sum_probs=68.3

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      ....|||+||||+++|+.+|||+|||+|++++|||++++++++.++|++|++||++|+||.+|+.||.++..|
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   86 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG   86 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence            4557999999999999999999999999999999999988889999999999999999999999999997554

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.81  E-value=2e-20  Score=143.67  Aligned_cols=68  Identities=38%  Similarity=0.702  Sum_probs=61.9

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      ....|||+||||+++|+.++||+||++|++++|||++++.   .++|++|++||++|+||.+|+.||++|.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            3457999999999999999999999999999999999753   5899999999999999999999999863

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=2.6e-20  Score=151.44  Aligned_cols=72  Identities=47%  Similarity=0.738  Sum_probs=64.5

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCc
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~  153 (403)
                      .|||+||||+++|+.+|||+|||+|++++|||++++.. .+.++|++|++||++|+||.+|+.||.++..+..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            48999999999999999999999999999999998653 5789999999999999999999999999765543

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.5e-20  Score=149.59  Aligned_cols=71  Identities=37%  Similarity=0.659  Sum_probs=64.7

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCC
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~  152 (403)
                      .+..|||+||||+++|+.+|||+|||+|++++|||+++++   .++|++|++||++|+||.+|+.||.++..+.
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   75 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAA   75 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence            4567999999999999999999999999999999999764   5799999999999999999999999976543

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.80  E-value=3.3e-20  Score=149.41  Aligned_cols=71  Identities=32%  Similarity=0.597  Sum_probs=64.9

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN------PSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      +...|||+||||+++|+.+|||+|||+|+++||||+++.+      +.+.++|++|++||++|+||.+|+.||....
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            4567999999999999999999999999999999998743      4578999999999999999999999999853

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=3.8e-20  Score=151.98  Aligned_cols=99  Identities=32%  Similarity=0.658  Sum_probs=89.4

Q ss_pred             CCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeC--C--ccccCCcCCCCcEEe
Q 015636          202 APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--P--FTSTCSTCKGLGRII  277 (403)
Q Consensus       202 g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~--~~~~C~~C~G~G~~~  277 (403)
                      |.|+.++|.|||+|||+|.++++.+.+.+.|+.|+|+|...+....+|+.|+|+|++.+.  +  ++.+|+.|+|.|+++
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i   80 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII   80 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence            468899999999999999999999999999999999999888888999999999987542  2  367999999999999


Q ss_pred             eeeeeEEeeceEEeceEEEEEEe
Q 015636          278 KDHCMTCKGSGVVDGVKEVKVTI  300 (403)
Q Consensus       278 ~~~C~~C~g~G~~~~~~~l~V~I  300 (403)
                      +++|..|.|.|++.+.+.|+|+|
T Consensus        81 ~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           81 ISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             SSCCSSSSSCSEECCCCSSCCSC
T ss_pred             CCcCCCCCCeeEEEEEEEEEEEc
Confidence            99999999999999888877654

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.76  E-value=3.1e-19  Score=147.71  Aligned_cols=70  Identities=34%  Similarity=0.576  Sum_probs=64.5

Q ss_pred             CCCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           80 SKRDPYELLGVPENA-SQDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~a-s~~eIk~ayr~la~~~HPD~~~~---~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      ...|||+||||+++| +.+|||+|||+|++++|||++++   .+.+.++|++|++||++|+||.+|+.||.++.
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            357999999999999 99999999999999999999975   35688999999999999999999999999853

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.74  E-value=1.2e-18  Score=159.76  Aligned_cols=72  Identities=46%  Similarity=0.760  Sum_probs=67.7

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCc
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~  153 (403)
                      .|||+||||+++|+.+|||+|||+|++++|||++++++++.++|++|++||++|+||.+|+.||++|..+..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            489999999999999999999999999999999988888999999999999999999999999999766543

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.7e-18  Score=137.17  Aligned_cols=62  Identities=32%  Similarity=0.552  Sum_probs=58.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhh
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQ  143 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~  143 (403)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence            3699999999999999999999999999999999985 6788999999999999999999874

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.73  E-value=2.2e-18  Score=151.43  Aligned_cols=70  Identities=31%  Similarity=0.588  Sum_probs=64.2

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------hHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP------SAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~------~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      +...|||+||||+++|+.++||+|||+|++++|||++++++      .+.++|++|++||++|+||.+|+.||..+
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            45679999999999999999999999999999999998753      26789999999999999999999999875

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.72  E-value=5.1e-18  Score=155.61  Aligned_cols=100  Identities=18%  Similarity=0.329  Sum_probs=72.7

Q ss_pred             ccccccccccccccccCCCCcchhhhhhhccccCCCCCCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh
Q 015636           42 HKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNP  119 (403)
Q Consensus        42 ~~r~~~~c~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~HPD~~~~~~  119 (403)
                      ....||+|......   . ....+++..+...  ++.....|||++|||+++  ++.++||+|||+|++++|||++++++
T Consensus         9 ~~~~Cw~C~~~~~~---~-~~~~~fC~~c~~~--q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~   82 (207)
T 3bvo_A            9 NYPRCWNCGGPWGP---G-REDRFFCPQCRAL--QAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRS   82 (207)
T ss_dssp             --CBCSSSCCBCCS---S-CSCCCBCTTTCCB--CCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSC
T ss_pred             CCCCCCCCCCCccc---c-ccccccccccccc--CCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            46789999753110   1 1111222222221  222345799999999986  79999999999999999999998654


Q ss_pred             h-----HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 015636          120 S-----AKRKFQEIRDAYETLRDSEKRAQYDRR  147 (403)
Q Consensus       120 ~-----a~~~f~~i~~Ay~vL~dp~~R~~yd~~  147 (403)
                      .     +.++|++|++||+||+||.+|+.||..
T Consensus        83 ~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A           83 QTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK  115 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3     567899999999999999999999975

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.71  E-value=2.7e-18  Score=136.28  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=60.5

Q ss_pred             CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhh
Q 015636           76 SCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQ  143 (403)
Q Consensus        76 ~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~dp~~R~~  143 (403)
                      ...+...++|+||||+++|+.+|||+|||+|+++||||++++++ .++++|++|++||++|+|...|..
T Consensus        10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A           10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            34455679999999999999999999999999999999998764 588999999999999999988743

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.69  E-value=1.2e-17  Score=129.99  Aligned_cols=62  Identities=18%  Similarity=0.306  Sum_probs=56.5

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        82 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      .++|+||||+++  |+.++||+|||+|++++|||++++    .++|++|++||++|+|+.+|..+ .+|
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~-~~g   74 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRM-NLG   74 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTT-CCS
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHH-hcC
Confidence            489999999999  999999999999999999999864    58999999999999999999874 453

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.68  E-value=2.7e-18  Score=142.76  Aligned_cols=64  Identities=23%  Similarity=0.396  Sum_probs=59.8

Q ss_pred             CCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           82 RDPYELLGVPENASQ--DEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~--~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      .+||+||||+++|+.  ++||+|||+|++++|||++++    .++|++|++||+||+||.+|+.||.++.
T Consensus         8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            589999999999999  999999999999999999875    4799999999999999999999998753

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.67  E-value=5.1e-18  Score=150.66  Aligned_cols=64  Identities=23%  Similarity=0.391  Sum_probs=57.2

Q ss_pred             CCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           82 RDPYELLGVPENAS--QDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        82 ~~~Y~iLgv~~~as--~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      .|||+||||+++|+  .+|||+|||+||+++|||++++    +++|++|++||++|+||.+|+.||++|.
T Consensus        11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            58999999999998  6999999999999999999875    3789999999999999999999999974

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.66  E-value=5e-17  Score=144.90  Aligned_cols=66  Identities=30%  Similarity=0.489  Sum_probs=61.3

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           83 DPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        83 ~~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      |||++|||++++  +.++||+|||+|+++||||++++.+.     |.++|+.|++||+||+||.+|+.||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  99999999999999999999987653     5579999999999999999999999974

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.65  E-value=5.6e-17  Score=144.82  Aligned_cols=66  Identities=21%  Similarity=0.447  Sum_probs=60.7

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHhhhhhhhhhh
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRDSEKRAQY  144 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~---a~~~f~~i~~Ay~vL~dp~~R~~y  144 (403)
                      +...|+|++|||+++|+.+|||+|||+|++++|||++++.+.   |+++|++|++||++|+||.+|+.|
T Consensus       114 ~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          114 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            334699999999999999999999999999999999986553   789999999999999999999987

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.63  E-value=1.1e-16  Score=127.52  Aligned_cols=56  Identities=21%  Similarity=0.440  Sum_probs=52.1

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhhh
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYETLRD  137 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~vL~d  137 (403)
                      .++|++|||+++|+.+|||+|||++|++||||++++++   .|+++|++|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999998765   378899999999999986

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2e-16  Score=120.57  Aligned_cols=59  Identities=15%  Similarity=0.278  Sum_probs=52.9

Q ss_pred             CCCCCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 015636           79 SSKRDPYELLGVPE-NASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR  141 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~-~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R  141 (403)
                      +...++|+||||++ +|+.+|||+|||+|++++|||++++    .++|++|++||++|+|+..|
T Consensus        11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence            44568999999999 7999999999999999999999753    46999999999999998766

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.59  E-value=3e-15  Score=141.23  Aligned_cols=138  Identities=24%  Similarity=0.389  Sum_probs=101.5

Q ss_pred             eEEEEEeeeccccCcceeccc-cceeecccCCCccccCC---------CccccCCCccceeEEEeCCc--cccCCcCCCC
Q 015636          206 QVELVLSFAEAAKGCTKHVSF-DAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPF--TSTCSTCKGL  273 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v~~-~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~--~~~C~~C~G~  273 (403)
                      ..++.++-...+..|...-.- .....|+.|+|+|....         ..+.+|+.|+|.|++    +  ..+|+.|+|.
T Consensus        30 ~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~----i~~~~~C~~C~G~  105 (248)
T 1nlt_A           30 TAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDI----IDPKDRCKSCNGK  105 (248)
T ss_dssp             EEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSC----CCTTSBCSSSTTS
T ss_pred             eEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEE----eccCCCCcccCCC
Confidence            445566655555444322211 12489999999997421         235789999999987    5  7899999999


Q ss_pred             cEEeeeeeeEEeec-eEEeceE----------------------------------------------------------
Q 015636          274 GRIIKDHCMTCKGS-GVVDGVK----------------------------------------------------------  294 (403)
Q Consensus       274 G~~~~~~C~~C~g~-G~~~~~~----------------------------------------------------------  294 (403)
                      |.+.+.+-.++.++ |+.++++                                                          
T Consensus       106 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~t  185 (248)
T 1nlt_A          106 KVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEH  185 (248)
T ss_dssp             CEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEEC
T ss_pred             ceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeC
Confidence            99999899999988 8888877                                                          


Q ss_pred             ----EEEEEeCCC--CCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCC--ceeeCCeE
Q 015636          295 ----EVKVTIPAG--VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPI--FSRDGADV  347 (403)
Q Consensus       295 ----~l~V~Ip~G--~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~--F~R~G~DL  347 (403)
                          .++|.||||  +++|++++|+|+|++...+...|||||+|+|+-+..  +..+..+|
T Consensus       186 ldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~  246 (248)
T 1nlt_A          186 VSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK  246 (248)
T ss_dssp             SSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-----------
T ss_pred             CCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHh
Confidence                589999999  999999999999999754446799999999996665  55554443

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.59  E-value=3.9e-16  Score=140.17  Aligned_cols=66  Identities=29%  Similarity=0.491  Sum_probs=59.8

Q ss_pred             CCCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           80 SKRDPYELL------GVPE-NASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        80 ~~~~~Y~iL------gv~~-~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      ...|||+||      |+++ +|+.++||+|||+|++++|||++++   +.++|++|++||+||+||.+|+.||...
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            346999999      4665 9999999999999999999999975   5689999999999999999999999964

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.58  E-value=4.2e-16  Score=127.95  Aligned_cols=60  Identities=13%  Similarity=0.200  Sum_probs=52.8

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----hHHHHHHHHHHHHHHhhhhh
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---NP----SAKRKFQEIRDAYETLRDSE  139 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~---~~----~a~~~f~~i~~Ay~vL~dp~  139 (403)
                      +...|||+|||++. |+.+|||+|||+|++++|||++++   ++    .|+++|++|++||++|+|+.
T Consensus        38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            44579999999996 999999999999999999999864   22    36889999999999999985

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.56  E-value=3.6e-16  Score=169.65  Aligned_cols=75  Identities=44%  Similarity=0.730  Sum_probs=40.9

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCCc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~~  153 (403)
                      ....|||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|+.||++|..|..
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~   92 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   92 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence            445799999999999999999999999999999999987788999999999999999999999999999876644

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.28  E-value=1.2e-12  Score=101.55  Aligned_cols=74  Identities=38%  Similarity=0.885  Sum_probs=64.3

Q ss_pred             CcceeccccceeecccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEec
Q 015636          219 GCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDG  292 (403)
Q Consensus       219 G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~  292 (403)
                      |.+++|.+.+.+.|+.|+|+|........+|+.|+|+|++...    .++.+|+.|+|.|++++++|..|+|.|++.+
T Consensus         1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~   78 (79)
T 1exk_A            1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEee
Confidence            6778899999999999999998877777899999999987532    1357999999999999999999999998754

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.15  E-value=2.7e-11  Score=99.74  Aligned_cols=46  Identities=28%  Similarity=0.358  Sum_probs=43.0

Q ss_pred             EcCCCceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCC
Q 015636          335 ADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVL  380 (403)
Q Consensus       335 ~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~  380 (403)
                      +||+.|+|+|+||+++++|+|.||++|++++|+||||.++|+||++
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g   47 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPG   47 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTT
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCC
Confidence            6899999999999999999999999999999999999999999985

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.01  E-value=7.7e-11  Score=97.04  Aligned_cols=78  Identities=22%  Similarity=0.342  Sum_probs=64.5

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      +.|.|+.+++.|+|.||+.|+++.+..-                                                    
T Consensus         9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl----------------------------------------------------   36 (109)
T 3i38_A            9 IVGHNLEIVLPLAPWEAALGAKVTVPTL----------------------------------------------------   36 (109)
T ss_dssp             EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred             EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence            4588999999999999999988776520                                                    


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeC
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDG  344 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G  344 (403)
                                 ++  .++|.||+|+++|++++|+|+|++. .+ .+|||||+|+|+-+.....+.
T Consensus        37 -----------dG--~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q   86 (109)
T 3i38_A           37 -----------KE--SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKA   86 (109)
T ss_dssp             -----------SS--CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHH
T ss_pred             -----------CC--CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHH
Confidence                       12  3689999999999999999999997 34 789999999999776655444

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=98.96  E-value=2e-10  Score=96.37  Aligned_cols=82  Identities=21%  Similarity=0.180  Sum_probs=62.5

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      ++|.|+.+++.|+|.+|+.|+++.+.--                                                    
T Consensus         4 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------   31 (121)
T 1xao_A            4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (121)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred             EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence            4588999999999999999987776410                                                    


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCC--CCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCC--ceeeCC
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAG--VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPI--FSRDGA  345 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~--F~R~G~  345 (403)
                                 ++ +.++|+||+|  +++|++++|+|+|++...+..+|||||+|+|+-+..  +..+..
T Consensus        32 -----------dG-~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~   89 (121)
T 1xao_A           32 -----------SG-DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENL   89 (121)
T ss_dssp             -----------TS-CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHH
T ss_pred             -----------CC-CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH
Confidence                       11 2578999999  999999999999999754446899999999997665  555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.92  E-value=5.9e-10  Score=110.33  Aligned_cols=65  Identities=46%  Similarity=0.710  Sum_probs=55.8

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 015636           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYETLRDSEKRAQYDR  146 (403)
Q Consensus        82 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~vL~dp~~R~~yd~  146 (403)
                      .++|.+||+.+.++.++|+++|+++++++|||+.+.++   .++++|++|++||++|+||.+|..||.
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            48999999999999999999999999999999997642   478899999999999999999999997

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=98.86  E-value=1.6e-09  Score=90.87  Aligned_cols=42  Identities=31%  Similarity=0.574  Sum_probs=40.0

Q ss_pred             CceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcCC
Q 015636          339 IFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIVL  380 (403)
Q Consensus       339 ~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~~  380 (403)
                      .|+|+|+||+++++|+|.|||+|++++|+||||+ +.|+||++
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g   43 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPG   43 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTT
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCC
Confidence            4999999999999999999999999999999997 99999976

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.75  E-value=6.7e-09  Score=77.06  Aligned_cols=52  Identities=17%  Similarity=0.232  Sum_probs=45.7

Q ss_pred             CcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhh
Q 015636           83 DPYELLGVPEN---ASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS  138 (403)
Q Consensus        83 ~~Y~iLgv~~~---as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp  138 (403)
                      .-|.||||+++   ++.++|+++||+|....|||+.++    .-...+|++|+++|...
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHHH
Confidence            56899999999   999999999999999999999764    35667899999999754

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.74  E-value=8.3e-09  Score=92.48  Aligned_cols=48  Identities=19%  Similarity=0.285  Sum_probs=40.7

Q ss_pred             EEEEEeCCCCCCCCEEEEcCCccCCCC-CCCcccEEEEEEEEcCCCcee
Q 015636          295 EVKVTIPAGVDSGDTIRVPEAGNAGGR-GRQHGNLFIKLKVADDPIFSR  342 (403)
Q Consensus       295 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~-g~~~GDL~v~i~v~~h~~F~R  342 (403)
                      .++|.||+|+++|++++|+|+|++... .+.+|||||+|+|+-+..++.
T Consensus       121 ~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~  169 (181)
T 3agx_A          121 TIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQ  169 (181)
T ss_dssp             EEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCH
T ss_pred             EEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence            688999999999999999999999754 356899999999997665543

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.66  E-value=8e-09  Score=92.51  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=64.1

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      +.|.|+.+++.|+|.||+.|+++.+.--                                                    
T Consensus        90 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------  117 (180)
T 2q2g_A           90 RDDCHLIMKVTIPLVRALTGFTCPVTTL----------------------------------------------------  117 (180)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred             EcCCEEEEEEEcCHHHHhCCCEEEeeCC----------------------------------------------------
Confidence            4689999999999999999987776521                                                    


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCC-CCcccEEEEEEEEcCCCcee
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRG-RQHGNLFIKLKVADDPIFSR  342 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g-~~~GDL~v~i~v~~h~~F~R  342 (403)
                                 ++. .++|.||+|+++|++++|+|+|++...+ +.+|||||+|+|+-+..+..
T Consensus       118 -----------dG~-~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~  169 (180)
T 2q2g_A          118 -----------DNR-NLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTP  169 (180)
T ss_dssp             -----------TCC-EEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCH
T ss_pred             -----------CCC-EEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence                       122 5788899999999999999999996533 46899999999996665543

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.55  E-value=1.1e-08  Score=90.68  Aligned_cols=78  Identities=27%  Similarity=0.342  Sum_probs=63.2

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      +.|.|+.+++.|+|.||+.|+++.+.--                                                    
T Consensus        84 R~G~DL~~~~~Isl~eAllG~~~~v~tl----------------------------------------------------  111 (170)
T 1c3g_A           84 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------  111 (170)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCcEeEEEEcCHHHHhCCCeEEeeCC----------------------------------------------------
Confidence            4689999999999999999988776511                                                    


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCC-CCcccEEEEEEEEcCCCce
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRG-RQHGNLFIKLKVADDPIFS  341 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g-~~~GDL~v~i~v~~h~~F~  341 (403)
                                 ++ +.++|.||+|+++|++++|+|+|++...+ +.+|||||+|+|.-+..+.
T Consensus       112 -----------dG-~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls  162 (170)
T 1c3g_A          112 -----------DG-RTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLN  162 (170)
T ss_dssp             -----------SS-CEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCC
T ss_pred             -----------CC-CEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCC
Confidence                       12 24678899999999999999999996533 3579999999999665544

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.39  E-value=2.3e-07  Score=90.66  Aligned_cols=78  Identities=22%  Similarity=0.349  Sum_probs=62.7

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      +.|.|+.+++.|+|.||+.|+++.|.-                                                     
T Consensus       229 R~G~DL~~~~~Isl~eAllG~~v~Vpt-----------------------------------------------------  255 (329)
T 3lz8_A          229 IVGHNLEIVLPLAPWEAALGAKVTVPT-----------------------------------------------------  255 (329)
T ss_dssp             EETTEEEEEEEECHHHHHHCEEEEECC-----------------------------------------------------
T ss_pred             EcCCcEEEEEECCHHHHcCCCeEEEEC-----------------------------------------------------
Confidence            357889999999999999998777651                                                     


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCCCceeeC
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDG  344 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~~F~R~G  344 (403)
                                .++.  ++|+||+|+++|++++|+|+|+|..  ..+|||||+|+|.-+.....+.
T Consensus       256 ----------LdG~--v~l~ip~gt~~g~~~rl~G~GmP~~--~~rGDL~v~~~V~~P~~l~~~q  306 (329)
T 3lz8_A          256 ----------LKES--ILLTVPPGSQAGQRLRIKGKGLVSK--THTGDLFAVIKIVMPTKPDEKA  306 (329)
T ss_dssp             ----------SSSC--EEEEECTTCCTTCEEEETTCSCBCS--SCBCCEEEEEEECCCSSCCHHH
T ss_pred             ----------CCCC--EEEEECCCCCCCCEEEEcCCCCCCC--CCCCCEEEEEEEECCCCCCHHH
Confidence                      1232  4789999999999999999999965  4689999999999666554443

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.92  E-value=4.4e-06  Score=64.14  Aligned_cols=48  Identities=29%  Similarity=0.769  Sum_probs=38.7

Q ss_pred             cceeecccCCCccccCCC-----ccccCCCccceeEEEeCCccccCCcCCCCcEEee
Q 015636          227 DAFVPCDSCHGRGFPADA-----KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (403)
Q Consensus       227 ~~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (403)
                      .....|+.|+|+|.....     ...+|+.|+|.|.+    +..+|+.|+|.|.+.+
T Consensus        26 ~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~G~~~~   78 (79)
T 1exk_A           26 TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL----IKDPCNKCHGHGRVER   78 (79)
T ss_dssp             SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE----CSSBCGGGTTSSEEEC
T ss_pred             ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEE----CCCcCCCCCCeEEEee
Confidence            345799999999975321     24689999999998    6789999999998753

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=4.2e-06  Score=67.90  Aligned_cols=53  Identities=25%  Similarity=0.593  Sum_probs=42.2

Q ss_pred             ceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeeeEE
Q 015636          228 AFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTC  284 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C  284 (403)
                      ....|+.|+|+|....     ....+|+.|+|.|++    +..+|+.|+|.|++.+.+-.++
T Consensus        44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~----i~~~C~~C~G~G~v~~~k~l~V  101 (104)
T 2ctt_A           44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSI----IISPCVVCRGAGQAKQKKRSGP  101 (104)
T ss_dssp             CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEE----CSSCCSSSSSCSEECCCCSSCC
T ss_pred             CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceE----CCCcCCCCCCeeEEEEEEEEEE
Confidence            4578999999996531     225689999999998    7889999999999876654443

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=97.40  E-value=1.2e-05  Score=84.66  Aligned_cols=51  Identities=14%  Similarity=0.266  Sum_probs=46.5

Q ss_pred             eEEEEEeeeccccCcceeccccceeecccCCCccccCCC---ccccCCCcccee
Q 015636          206 QVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADA---KTKICSTCRGIG  256 (403)
Q Consensus       206 ~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G  256 (403)
                      .+.+.|+|+|++.|.++++.+.+...|..|+|+|...+.   ...+|+.|+|..
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~  221 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSK  221 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCc
Confidence            467889999999999999999999999999999998876   578999999983

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.17  E-value=0.00018  Score=50.83  Aligned_cols=25  Identities=40%  Similarity=0.917  Sum_probs=12.2

Q ss_pred             cCCCccceeEEEeCCccccCCcCCCCcEE
Q 015636          248 ICSTCRGIGRVTIPPFTSTCSTCKGLGRI  276 (403)
Q Consensus       248 ~C~~C~G~G~~~~~~~~~~C~~C~G~G~~  276 (403)
                      +|+.|+|+|.+    +..+|+.|+|.|.+
T Consensus        11 ~C~~C~GsG~~----i~~~C~~C~G~G~v   35 (53)
T 3lcz_A           11 TCPNCNGSGRE----EPEPCPKCLGKGVI   35 (53)
T ss_dssp             ECTTTTTSCEE----TTEECTTTTTSSEE
T ss_pred             cCcCCcccccC----CCCcCCCCCCcEEE
Confidence            44444444444    34455555555544

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.07  E-value=8.5e-05  Score=52.51  Aligned_cols=30  Identities=37%  Similarity=0.836  Sum_probs=21.3

Q ss_pred             ccccCCcCCCCcEEeeeeeeEEeeceEEec
Q 015636          263 FTSTCSTCKGLGRIIKDHCMTCKGSGVVDG  292 (403)
Q Consensus       263 ~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~  292 (403)
                      ++.+|+.|+|+|.++.++|..|+|.|++.+
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~   37 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILT   37 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence            456777777777777777777777776554

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.90  E-value=0.00043  Score=48.84  Aligned_cols=26  Identities=31%  Similarity=0.736  Sum_probs=12.7

Q ss_pred             eecccCCCccccCCCccccCCCccceeEE
Q 015636          230 VPCDSCHGRGFPADAKTKICSTCRGIGRV  258 (403)
Q Consensus       230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  258 (403)
                      +.|+.|+|+|...   ..+|+.|+|.|.+
T Consensus        10 ~~C~~C~GsG~~~---~~~C~~C~G~G~v   35 (53)
T 2bx9_A           10 VACPKCERAGEIE---GTPCPACSGKGVI   35 (53)
T ss_dssp             EECTTTTTSSEET---TEECTTTTTSSEE
T ss_pred             ccCCCCcceeccC---CCCCccCCCCccE
Confidence            4566666655542   1344444444443

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=95.88  E-value=0.0015  Score=45.98  Aligned_cols=29  Identities=28%  Similarity=0.762  Sum_probs=23.2

Q ss_pred             cccCCCccceeEEEeCCccccCCcCCCCcEEee
Q 015636          246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (403)
Q Consensus       246 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (403)
                      ..+|+.|+|+|.+    ...+|+.|+|.|.++.
T Consensus         9 ~~~C~~C~GsG~~----~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEI----EGTPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEE----TTEECTTTTTSSEEEC
T ss_pred             cccCCCCcceecc----CCCCCccCCCCccEEE
Confidence            4578999999887    5678888888888764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=87.88  E-value=0.31  Score=51.41  Aligned_cols=48  Identities=15%  Similarity=0.267  Sum_probs=38.3

Q ss_pred             CCCCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHH
Q 015636           79 SSKRDPYELLGVPENASQ--DEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYET  134 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~--~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~v  134 (403)
                      ...++||.+||++.++..  .+|++|||+||+..+++        .+++..|..|+.|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            445579999999777655  77999999999975433        5789999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-22
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	6e-22
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-18
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-18
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-17
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	2e-17
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-17
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	4e-15
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	9e-14
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	2e-11
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	6e-11
d1m1qa_	90	a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum	6e-09
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	2e-05
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	2e-05

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.6 bits (219), Expect = 2e-22
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRK------FQEIRDAY 132
           + K+D Y +LG   +A+  ++K+ +  L   YHPD    +  A         F EI  A+
Sbjct: 13  TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 133 ETLRDSEKRAQYDRRRSRGS 152
           + L + E + +YD +RS  S
Sbjct: 73  KILGNEETKKKYDLQRSGPS 92

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 86.6 bits (214), Expect = 6e-22
 Identities = 35/66 (53%), Positives = 50/66 (75%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+K
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61

Query: 141 RAQYDR 146
           RA YD+
Sbjct: 62  RAAYDQ 67

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 77.0 bits (189), Expect = 2e-18
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 83  DPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKR-----KFQEIRDAYETL 135
           D + L G+P     D   +   F  L +QYHPD   +   A++     +   I  A++TL
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 136 RDSEKRAQYD 145
           R    RA+Y 
Sbjct: 62  RHPLMRAEYL 71

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.9 bits (189), Expect = 4e-18
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAK---RKFQEIRDAYETLR 136
           +    ++ +G+ +  + +++KK +       HPD     P  +     F E+ DA+    
Sbjct: 31  AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 137 DSEKRAQY 144
           +  ++  Y
Sbjct: 91  NQGQKPLY 98

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 1e-17
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
            +D Y+ LG+   AS +EIK+A+   A +YHPD N   P A+ KF+EI +AY+ L D  K
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 141 RAQYDRRRSRGSENE 155
           R  +DR    G +  
Sbjct: 61  REIFDRYGEEGLKGS 75

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 2e-17
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 72  HATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSA-KRKFQEIRD 130
           H      S  ++   ++       + E KK    L  ++HPD N  N       F+ +++
Sbjct: 6   HHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQN 65

Query: 131 AYETLRDSEKRAQYDRRRSRGS 152
               L   EK+A  D+   R S
Sbjct: 66  EINRL---EKQAFLDQNADRAS 84

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 73.9 bits (181), Expect = 3e-17
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 79  SSKRDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR 136
           + K    ELL +P         +++A+   +   HPD   ++       QE+   + T +
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA----LMQELNSLWGTFK 63

Query: 137 DSEKRAQYDRRRS 149
                 + +   +
Sbjct: 64  TEVYNLRMNLGGT 76

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 67.8 bits (165), Expect = 4e-15
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 219 GCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPP----FTSTCSTCKGLG 274
           G TK +       CD CHG G     + + C TC G G+V +         TC  C+G G
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60

Query: 275 RIIKDHCMTCKGSGVV 290
            +IKD C  C G G V
Sbjct: 61  TLIKDPCNKCHGHGRV 76

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 65.2 bits (158), Expect = 9e-14
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 81  KRDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
                +LLG+  +A  +   ++KA+    K++HPD   +      K +++   Y+ + D 
Sbjct: 7   SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMEDG 62

Query: 139 EKRAQYDRRRSRGSENEKYSAGDAEGFRY 167
            K A            E  + G  E  ++
Sbjct: 63  VKYAHQPDFGGFWDATEIPTYGTDEWEQW 91

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 269 TCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNL 328
              G  +  K       G+       ++ + +  G  +G  I     G+   +  +   L
Sbjct: 14  LFVGKKKSFKIGRKGPHGAS---EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTL 70

Query: 329 FIKLKVADDP 338
              ++    P
Sbjct: 71  QFVIQEKSHP 80

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.8 bits (134), Expect = 6e-11
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 230 VPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRII--KD 279
           + C  C GRG       K C++C G G   +          F + C  C G G II  KD
Sbjct: 3   ILCKECEGRGG-KKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKD 61

Query: 280 HCMTCKGSGVV 290
            C +C G  V 
Sbjct: 62  RCKSCNGKKVE 72

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

 Score = 50.9 bits (121), Expect = 6e-09
 Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 11/74 (14%)

Query: 228 AFVPCDSCHGRGFPADAKT---KICSTCRGIGRVTIPPFT--------STCSTCKGLGRI 276
               C+SCH  G P+         C +C G                  + C     +   
Sbjct: 10  ESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVG 69

Query: 277 IKDHCMTCKGSGVV 290
            K  C +C   G  
Sbjct: 70  QKPTCESCHDDGRT 83

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 340 FSRDGADVYVDSNISFTQAILGGKVDVPT 368
           F RDG D+  ++ I    AI GG+  +  
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEH 30

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 340 FSRDGADVYVDSNISFTQAILGGKVDVPT 368
           F RDG D+     +SF +++LG    + T
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQT 30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.8
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.78
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.71
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.69
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.66
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.66
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.63
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.59
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.47
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.04
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	98.9
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.85
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.76
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	98.66
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.0
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.5
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	97.34
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	95.35
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	84.61
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	84.54

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=8.9e-24  Score=161.35  Aligned_cols=71  Identities=49%  Similarity=0.821  Sum_probs=67.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 015636           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (403)
Q Consensus        81 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g  151 (403)
                      .+|||+||||+++||.+|||+|||+|++++|||++++++.++++|++|++||+||+||.+|+.||++|..+
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccc
Confidence            46999999999999999999999999999999999988889999999999999999999999999997654

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.2e-22  Score=152.76  Aligned_cols=72  Identities=44%  Similarity=0.758  Sum_probs=66.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCC
Q 015636           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~g~  152 (403)
                      |.+|||+||||+++||.+||++||+++++++|||++.. +++.++|+.|++||+||+||.+|+.||++|..|.
T Consensus         1 m~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            35699999999999999999999999999999999974 6788999999999999999999999999977654

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.5e-20  Score=149.40  Aligned_cols=70  Identities=31%  Similarity=0.595  Sum_probs=63.7

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN------PSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        79 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      .+.+|||+||||+++|+.+|||+||++|+++||||+++.+      +.++++|+.|++||+||+||.+|+.||...
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            3457999999999999999999999999999999998764      347789999999999999999999999873

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.78  E-value=2.2e-20  Score=153.90  Aligned_cols=65  Identities=23%  Similarity=0.390  Sum_probs=59.6

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Q 015636           82 RDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSR  150 (403)
Q Consensus        82 ~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~~  150 (403)
                      .+||+||||+++|  +.++||+|||+||+++|||++++    .++|++|++||+||+||.+|+.||.++..
T Consensus         8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            4899999999999  78899999999999999999985    36899999999999999999999987543

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.71  E-value=2.1e-18  Score=131.85  Aligned_cols=63  Identities=17%  Similarity=0.297  Sum_probs=58.4

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 015636           82 RDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (403)
Q Consensus        82 ~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~  148 (403)
                      .+||+||||++++  +.++||+|||++++++|||++++    .++|++||+||++|+|+.+|..||..+
T Consensus        11 ~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            5899999999988  99999999999999999999864    478999999999999999999999863

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=6.3e-18  Score=128.87  Aligned_cols=65  Identities=31%  Similarity=0.513  Sum_probs=57.8

Q ss_pred             CcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 015636           83 DPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRR  147 (403)
Q Consensus        83 ~~Y~iLgv~~~--as~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~dp~~R~~yd~~  147 (403)
                      |||++|||+++  ++.+|||+||+++++++|||+..+.+.     +.+.|+.|++||+||+||.+|+.|+..
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            89999999985  458999999999999999999875442     667899999999999999999999864

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-17  Score=128.40  Aligned_cols=70  Identities=21%  Similarity=0.279  Sum_probs=60.4

Q ss_pred             CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 015636           77 CYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (403)
Q Consensus        77 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~dp~~R~~yd~~~~  149 (403)
                      ....-.++|+||+|+.+||.+|||+|||+|+++||||++++++ .|.++|+.|++||++|++   +..||....
T Consensus        11 r~~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~   81 (88)
T d1iura_          11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNAD   81 (88)
T ss_dssp             SSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred             chhHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence            3344469999999999999999999999999999999998775 488999999999999975   667776643

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=6.9e-17  Score=124.23  Aligned_cols=80  Identities=18%  Similarity=0.295  Sum_probs=67.3

Q ss_pred             CCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeeeeee
Q 015636          203 PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCM  282 (403)
Q Consensus       203 ~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~  282 (403)
                      .+++++|.|||||+|.|+++++++.+.    .|+|.                 +                          
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~----~~~g~-----------------~--------------------------   33 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRK----GPHGA-----------------S--------------------------   33 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEE----ETTTE-----------------E--------------------------
T ss_pred             CCEEEEeEEEHHHHhCCCceEeeccee----cccCC-----------------C--------------------------
Confidence            368999999999999999999886432    22221                 1                          


Q ss_pred             EEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCC
Q 015636          283 TCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDP  338 (403)
Q Consensus       283 ~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~  338 (403)
                               +.++++|.||||+++|++|+|+|+|++.++++.+|||+|+|+++|||
T Consensus        34 ---------~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          34 ---------EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             ---------EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             ---------ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence                     34679999999999999999999999887777899999999999997

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=3.9e-17  Score=130.19  Aligned_cols=65  Identities=22%  Similarity=0.471  Sum_probs=59.1

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhhhhhhhhhh
Q 015636           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYETLRDSEKRAQY  144 (403)
Q Consensus        80 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~vL~dp~~R~~y  144 (403)
                      ...+.|++||+...++.++||+|||++++++|||++++++   .|++.|+.|++||++|+||.+|+.|
T Consensus        31 ~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            3457899999999999999999999999999999987654   2788999999999999999999987

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.1e-15  Score=115.54  Aligned_cols=73  Identities=19%  Similarity=0.274  Sum_probs=65.1

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      ++|.|++++|.|||+|||.|+++++.+                                                     
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~-----------------------------------------------------   28 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLAL-----------------------------------------------------   28 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEE-----------------------------------------------------
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceee-----------------------------------------------------
Confidence            578999999999999999999888753                                                     


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCCCCCcccEEEEEEEEcCC
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDP  338 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~h~  338 (403)
                                  ..+.++|+||+|+++|++|+|+|+|++.+ ++.+|||+|+|+++||.
T Consensus        29 ------------~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~-~~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          29 ------------NRKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHK   74 (74)
T ss_dssp             ------------EEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCS
T ss_pred             ------------cCccEEEEecccccCCeEEEecCCcCCCC-CCCCCCEEEEEEecCCC
Confidence                        23578999999999999999999999975 56799999999999995

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=7.4e-15  Score=112.34  Aligned_cols=74  Identities=38%  Similarity=0.885  Sum_probs=67.0

Q ss_pred             CcceeccccceeecccCCCccccCCCccccCCCccceeEEEeC----CccccCCcCCCCcEEeeeeeeEEeeceEEec
Q 015636          219 GCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDG  292 (403)
Q Consensus       219 G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~  292 (403)
                      |++++|.+.+.+.|+.|+|+|...+....+|+.|+|+|++.+.    .++.+|+.|+|+|+++.++|..|+|.|++.+
T Consensus         1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~k   78 (79)
T d1exka_           1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeECCCCCCCCCCceEeec
Confidence            6789999999999999999999888888999999999988654    2477999999999999999999999998875

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=1.9e-11  Score=91.70  Aligned_cols=64  Identities=38%  Similarity=0.853  Sum_probs=52.8

Q ss_pred             ceeecccCCCccccCCCccccCCCccceeEEEeC--------CccccCCcCCCCcEEe--eeeeeEEeeceEEec
Q 015636          228 AFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRII--KDHCMTCKGSGVVDG  292 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~--~~~C~~C~g~G~~~~  292 (403)
                      |.+.|+.|+|+|..... ..+|+.|+|+|++...        +++.+|+.|.|+|+++  +++|..|+|.|++++
T Consensus         1 r~v~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           1 KQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             CccCCcCCcccccCCCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            46899999999987654 5689999999986532        2367899999999886  468999999998764

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=5.6e-10  Score=84.82  Aligned_cols=73  Identities=22%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      +.|.|+.+++.|+|.||+.|+++.+...                                                    
T Consensus         4 R~G~dL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (80)
T d1nlta2           4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (80)
T ss_dssp             EETTEEEEEEEEEHHHHHHCBCCEEECS----------------------------------------------------
T ss_pred             EeCCEEEEEEEeCHHHHhCCCEEEEEec----------------------------------------------------
Confidence            4588999999999999999998877621                                                    


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCC--CCCCCEEEEcCCccCCCCCCCcccEEEEEEEEc
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAG--VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVAD  336 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~  336 (403)
                                  ....++|.||++  +++|++++++|+|++...++..|||+|+++|+-
T Consensus        32 ------------dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~   78 (80)
T d1nlta2          32 ------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKD   78 (80)
T ss_dssp             ------------SSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEEC
T ss_pred             ------------CcceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEc
Confidence                        113566778776  999999999999998877778999999999973

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=5.9e-10  Score=86.62  Aligned_cols=78  Identities=26%  Similarity=0.292  Sum_probs=63.9

Q ss_pred             CCCCCceEEEEEeeeccccCcceeccccceeecccCCCccccCCCccccCCCccceeEEEeCCccccCCcCCCCcEEeee
Q 015636          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (403)
Q Consensus       200 ~~g~di~~~l~ltlee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (403)
                      ++|.|+.+.+.|+|.||+.|+++.+...                                                    
T Consensus         4 R~G~DL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (90)
T d1c3ga2           4 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------   31 (90)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCeEEEEEEeCHHHHhcCCeEEEecc----------------------------------------------------
Confidence            4688999999999999999998887521                                                    


Q ss_pred             eeeEEeeceEEeceEEEEEEeCCCCCCCCEEEEcCCccCCCC-CCCcccEEEEEEEEcCCCce
Q 015636          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGR-GRQHGNLFIKLKVADDPIFS  341 (403)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~-g~~~GDL~v~i~v~~h~~F~  341 (403)
                                 + .+.++|+||+|+++|++++++|+|++... .+..|||+|+++|+-+..+.
T Consensus        32 -----------d-G~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ls   82 (90)
T d1c3ga2          32 -----------D-GRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLN   82 (90)
T ss_dssp             -----------S-SCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCC
T ss_pred             -----------c-ccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCCC
Confidence                       1 23678999999999999999999998653 35689999999998554443

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=2.9e-09  Score=82.62  Aligned_cols=41  Identities=27%  Similarity=0.524  Sum_probs=38.8

Q ss_pred             CceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcC
Q 015636          339 IFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIV  379 (403)
Q Consensus       339 ~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~  379 (403)
                      .|+|+|+||+++++|++.||++|++++|+|+||+ +.|+||.
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~   42 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQ   42 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceeccccc
Confidence            5999999999999999999999999999999995 6899986

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=4.8e-09  Score=79.51  Aligned_cols=42  Identities=31%  Similarity=0.574  Sum_probs=38.3

Q ss_pred             CceeeCCeEEEEeecCHhhhhcCCeEEeeCCCCc-EEEEEcCC
Q 015636          339 IFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKVIVL  380 (403)
Q Consensus       339 ~F~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~~  380 (403)
                      .|+|+|+||+++++|++.||++|++++|+|+||+ +.++||..
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~   43 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPG   43 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTT
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCC
Confidence            4999999999999999999999999999999996 56778764

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.1e-06  Score=65.95  Aligned_cols=47  Identities=32%  Similarity=0.807  Sum_probs=38.5

Q ss_pred             ceeecccCCCccccCC-----CccccCCCccceeEEEeCCccccCCcCCCCcEEee
Q 015636          228 AFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (403)
Q Consensus       228 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (403)
                      ....|+.|+|+|....     ....+|+.|+|+|++    +..+|..|.|+|++.+
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~----i~~~C~~C~G~G~v~k   78 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL----IKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE----CSSBCGGGTTSSEEEC
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeE----CCCCCCCCCCceEeec
Confidence            4578999999996532     125689999999998    6789999999999865

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=1.4e-05  Score=58.86  Aligned_cols=47  Identities=26%  Similarity=0.581  Sum_probs=35.6

Q ss_pred             eeecccCCCccccCCC---------ccccCCCccceeEEEeCCccccCCcCCCCcEEe
Q 015636          229 FVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRII  277 (403)
Q Consensus       229 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~  277 (403)
                      ...|+.|+|+|.....         ...+|+.|+|.|++..  ...+|..|.|+|.+.
T Consensus        18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~--~~~~C~~C~G~g~v~   73 (74)
T d1nlta3          18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID--PKDRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC--TTSBCSSSTTSCEEE
T ss_pred             CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC--CCCCCCCCCCeeEeC
Confidence            3579999999975422         1468999999998621  246899999999764

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=4e-05  Score=56.29  Aligned_cols=40  Identities=15%  Similarity=0.129  Sum_probs=37.5

Q ss_pred             eeCCeEEEEeecCHhhhhcCCeEEeeCCCCcEEEEEcCCC
Q 015636          342 RDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKVIVLS  381 (403)
Q Consensus       342 R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~~~  381 (403)
                      |+|.|++++++|||.||++|.+++|.+..+.+.|+||++.
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~~~~~~i~Ip~G~   41 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGM   41 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEEEEEECTTC
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeecCccEEEEecccc
Confidence            6899999999999999999999999998888999999974

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=95.35  E-value=0.00032  Score=52.96  Aligned_cols=60  Identities=23%  Similarity=0.519  Sum_probs=45.1

Q ss_pred             ecccCCCccccCCCc---cccCCCccceeEEEeC--------CccccCCcCCCCcEEeeeeeeEEeeceEE
Q 015636          231 PCDSCHGRGFPADAK---TKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVV  290 (403)
Q Consensus       231 ~C~~C~G~G~~~~~~---~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~  290 (403)
                      .|..|+|.|......   ...|..|+|.|.....        ..-..|..|.|.|..+.+.|..|.+.|..
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            699999988654332   4679999999865322        12467888889998889999999998754

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=84.61  E-value=0.071  Score=39.28  Aligned_cols=45  Identities=31%  Similarity=0.604  Sum_probs=32.1

Q ss_pred             eeecccCCCccccCCCc---------cccCCCccceeEEEeCCccccCCcCCCCcEEe
Q 015636          229 FVPCDSCHGRGFPADAK---------TKICSTCRGIGRVTIPPFTSTCSTCKGLGRII  277 (403)
Q Consensus       229 ~~~C~~C~G~G~~~~~~---------~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~  277 (403)
                      ...|..|+|.|......         -..|..|+|.|..    +...|..|.+.|++.
T Consensus        31 ~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~----~~~~C~~CH~~gr~~   84 (90)
T d1m1qa_          31 FAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVG----QKPTCESCHDDGRTS   84 (90)
T ss_dssp             HHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTT----CCCCSTTTCSSCCCH
T ss_pred             CCcCcccCCCceeEeeccccccCccccccCccccCCCCc----CCCccccccCCCccc
Confidence            35799999998653211         2567777787754    567899999998753

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.54  E-value=0.48  Score=33.86  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=28.1

Q ss_pred             CeEEEEeecCHhhhhcCCeEEee----CCCC-----cEEEEEcCC
Q 015636          345 ADVYVDSNISFTQAILGGKVDVP----TLSG-----KVQVKVIVL  380 (403)
Q Consensus       345 ~DL~~~~~Isl~eAllG~~~~I~----tldG-----~~~l~ip~~  380 (403)
                      +||.+.+.|||.||..|++++|.    ..+|     .+.|.||++
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G   45 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPG   45 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTT
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCC
Confidence            47899999999999999977765    3444     357777775