Citrus Sinensis ID: 015642

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW
ccccccHHHHHHHcccccEEEEEEcHHHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHccccccccccccHHcccccccccccccEEccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEccccccEEEEEEEccEEEEEEEEEEcHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccEEcccccccccccccc
ccccccHHHHHHHHccccEEEEEEcHHHHHHHHHHHccccccHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccHHHHHHHHHHccHHHHHHEccEccHHHHHHHHHccHHHHcccccHHHEEEEEEEcccHHHHHHccHHHccccccccccccccccccccccEEEEHHHHHHHHHHccccHHcccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHccccccccEccHHHcccccEEEEEEEEccEEEEEEEEEcHHHHHHHHHHHHHccccccEEEEEcccccHHHccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHHHHcccEcccccccccccccc
MLEKQSLDEFLSNINKGKAVIISLSPQSRASlaehfgisplQVFKKLTTFLKSLgvksifdtscsRDLTLIEACNEFIARYKqsqesddersnsslpmlssacpgwICYAEKqlgsyilpyissvkspqqtigATIKHHIcqklgfrpdeiyhvtvmpcydKKLEAAREDFVFQLDSqeetyrdegleipevdsvlttGEVLDLIQLKAVnfealeespldkmltnvddeghlygvagssggyaETVFRHAAKTLFGKVIEGhlefktirnsdfREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEvmacpsgclngggqikpkpgqspkELIKTLETIYLEnvmladpfknplvRSLYDEwleqpgsekakkhvhteyhPVVKSITAQLHNW
MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKqsqesddersnsSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQeetyrdegleipevdsvLTTGEVLDLIQLKAVNfealeespldKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLngggqikpkpgqsPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSekakkhvhteyhPVVKSITAQLHNW
MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW
*************INKGKAVIISLS***RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY*******************SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG************LIKTLETIYLENVMLADPFKNPLVRSLYDEWLE*****************V***********
M*E*QSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK************SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV**********GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV*S******NW
MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY****************MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW
***KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD****NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV***************EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP************
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MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
A2RRV9411 Cytosolic Fe-S cluster as yes no 0.890 0.873 0.506 1e-101
Q9H6Q4476 Cytosolic Fe-S cluster as yes no 0.910 0.771 0.468 7e-97
Q5BK18476 Cytosolic Fe-S cluster as yes no 0.888 0.752 0.482 7e-97
Q5RF36476 Cytosolic Fe-S cluster as yes no 0.910 0.771 0.466 4e-96
Q7TMW6476 Cytosolic Fe-S cluster as yes no 0.910 0.771 0.474 2e-95
A4FV58476 Cytosolic Fe-S cluster as yes no 0.918 0.777 0.460 2e-95
Q54F30522 Probable cytosolic Fe-S c yes no 0.972 0.750 0.427 3e-93
A8WH18476 Cytosolic Fe-S cluster as yes no 0.890 0.754 0.478 1e-91
Q16ML2478 Probable cytosolic Fe-S c N/A no 0.945 0.797 0.389 1e-84
B0WU52478 Probable cytosolic Fe-S c N/A no 0.945 0.797 0.396 8e-84
>sp|A2RRV9|NARFL_DANRE Cytosolic Fe-S cluster assembly factor narfl OS=Danio rerio GN=narfl PE=2 SV=1 Back     alignment and function desciption
 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/379 (50%), Positives = 257/379 (67%), Gaps = 20/379 (5%)

Query: 26  PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 85
           PQSRASLA H+GI   +V +KLT+FLK LGV  +FDT+ SR  +LIE+  EF+ R+ Q +
Sbjct: 52  PQSRASLAAHYGIGSSEVARKLTSFLKHLGVHHVFDTAFSRSFSLIESQREFLQRFSQ-R 110

Query: 86  ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 145
           E+D +    +LPML+SACPGWICYAEK  G +ILPYIS+ +SPQQ +G+ +K +   + G
Sbjct: 111 EADKK----ALPMLASACPGWICYAEKTHGEFILPYISTTRSPQQIMGSLVKGYFASQKG 166

Query: 146 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 205
             P  IYHVTVMPCYDKKLEA+R DF     S+ ET         EVD V+T+GEVL ++
Sbjct: 167 VSPQMIYHVTVMPCYDKKLEASRPDFYL---SEHETR--------EVDCVITSGEVLKML 215

Query: 206 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHL 264
           + + V+   ++ +PLD M +NV  E  L G AGS SGGY   +++HAAK LFG  ++  L
Sbjct: 216 EEEKVSLRDVQPAPLDTMFSNVCGE-ELLGHAGSGSGGYLHHIYKHAAKQLFGVDVD-EL 273

Query: 265 EFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC 324
            +KT++N DF+EV LE +G+ LLKFA  YGF+N+QN+V+K+K  K  Y FVEVMACPSGC
Sbjct: 274 TYKTMKNKDFQEVTLEKDGQVLLKFAAVYGFRNIQNLVQKLKRGKSPYHFVEVMACPSGC 333

Query: 325 LNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH 384
           LNGGGQ+KP   QS KEL++ +E +Y  +   + P  +  V  LY  WLE  G EKA++ 
Sbjct: 334 LNGGGQLKPSADQSNKELLQQVEEVY-RSEHPSVPEDDSQVAELYQSWLESVGEEKARQL 392

Query: 385 VHTEYHPVVKSITAQLHNW 403
           +HT+YH V K+       W
Sbjct: 393 LHTQYHAVEKTANGLSIKW 411
Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins.
Danio rerio (taxid: 7955)
>sp|Q9H6Q4|NARFL_HUMAN Cytosolic Fe-S cluster assembly factor NARFL OS=Homo sapiens GN=NARFL PE=1 SV=1 Back     alignment and function description
>sp|Q5BK18|NARFL_RAT Cytosolic Fe-S cluster assembly factor NARFL OS=Rattus norvegicus GN=Narfl PE=2 SV=1 Back     alignment and function description
>sp|Q5RF36|NARFL_PONAB Cytosolic Fe-S cluster assembly factor NARFL OS=Pongo abelii GN=NARFL PE=2 SV=1 Back     alignment and function description
>sp|Q7TMW6|NARFL_MOUSE Cytosolic Fe-S cluster assembly factor NARFL OS=Mus musculus GN=Narfl PE=2 SV=2 Back     alignment and function description
>sp|A4FV58|NARFL_BOVIN Cytosolic Fe-S cluster assembly factor NARFL OS=Bos taurus GN=NARFL PE=2 SV=2 Back     alignment and function description
>sp|Q54F30|NARF_DICDI Probable cytosolic Fe-S cluster assembly factor narfl OS=Dictyostelium discoideum GN=narfl PE=3 SV=1 Back     alignment and function description
>sp|A8WH18|NARFL_XENTR Cytosolic Fe-S cluster assembly factor narfl OS=Xenopus tropicalis GN=narfl PE=2 SV=1 Back     alignment and function description
>sp|Q16ML2|NARF_AEDAE Probable cytosolic Fe-S cluster assembly factor AAEL012261 OS=Aedes aegypti GN=AAEL012261 PE=3 SV=1 Back     alignment and function description
>sp|B0WU52|NARF_CULQU Probable cytosolic Fe-S cluster assembly factor CPIJ010948 OS=Culex quinquefasciatus GN=CPIJ010948 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
449443528478 PREDICTED: cytosolic Fe-S cluster assemb 1.0 0.843 0.791 0.0
224139480471 predicted protein [Populus trichocarpa] 0.995 0.851 0.794 0.0
224086530478 predicted protein [Populus trichocarpa] 0.995 0.838 0.791 0.0
359496948478 PREDICTED: cytosolic Fe-S cluster assemb 1.0 0.843 0.771 0.0
255563810475 electron transporter, putative [Ricinus 0.972 0.825 0.809 0.0
356522067474 PREDICTED: cytosolic Fe-S cluster assemb 1.0 0.850 0.741 0.0
356562481474 PREDICTED: cytosolic Fe-S cluster assemb 1.0 0.850 0.741 0.0
255647952474 unknown [Glycine max] 1.0 0.850 0.741 0.0
297800500474 predicted protein [Arabidopsis lyrata su 0.987 0.839 0.743 0.0
240255938474 ferredoxin hydrogenase [Arabidopsis thal 0.990 0.841 0.730 1e-180
>gi|449443528|ref|XP_004139529.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Cucumis sativus] gi|449505551|ref|XP_004162505.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/403 (79%), Positives = 365/403 (90%)

Query: 1   MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
           MLEKQSLDEFLSN+NKGK VI+SLSPQSRASLA HFGISPL+VFKKLTTF KS+GVK+IF
Sbjct: 76  MLEKQSLDEFLSNLNKGKVVIVSLSPQSRASLAVHFGISPLKVFKKLTTFFKSMGVKAIF 135

Query: 61  DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
           DTSCSRDLTLIEACNEFIARY+ SQ+ ++E+  SS+PM+SSACPGWICYAEKQ GSYILP
Sbjct: 136 DTSCSRDLTLIEACNEFIARYRNSQQDNEEKCKSSVPMISSACPGWICYAEKQHGSYILP 195

Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
           YISSVKSPQQ IG+ +KHH+CQKLG R D++YHVTVMPCYDKKLEAAREDFVFQLDS  +
Sbjct: 196 YISSVKSPQQMIGSIVKHHMCQKLGIRSDDVYHVTVMPCYDKKLEAAREDFVFQLDSANK 255

Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
           T   E   I EVDSVLT+GEVL+LIQ+K V+F++LEESPLD+MLTNV++EGHL+GV+GSS
Sbjct: 256 TLEAEAHRITEVDSVLTSGEVLELIQMKEVDFKSLEESPLDRMLTNVNEEGHLFGVSGSS 315

Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
           GGYAET+FRHAAK LFGK IEG LEFK IRNSDF+E+ LEVEGKTLLKFALCYGF+NLQN
Sbjct: 316 GGYAETIFRHAAKILFGKDIEGPLEFKLIRNSDFQELTLEVEGKTLLKFALCYGFRNLQN 375

Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
           +VRK+K  KCDY F+E+MACPSGCLNGGGQIKPKPGQSPK+LI+ LE  Y ENV++ DPF
Sbjct: 376 VVRKIKTGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSPKDLIELLEAAYQENVLMRDPF 435

Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
            NP+V+ +Y EWLE+PGSEKAKKH+HTEYHPVVKSITAQLHNW
Sbjct: 436 DNPVVKEIYKEWLEEPGSEKAKKHLHTEYHPVVKSITAQLHNW 478

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224139480|ref|XP_002323132.1| predicted protein [Populus trichocarpa] gi|222867762|gb|EEF04893.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224086530|ref|XP_002307904.1| predicted protein [Populus trichocarpa] gi|222853880|gb|EEE91427.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359496948|ref|XP_003635380.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Vitis vinifera] gi|297744923|emb|CBI38438.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563810|ref|XP_002522906.1| electron transporter, putative [Ricinus communis] gi|223537891|gb|EEF39506.1| electron transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356522067|ref|XP_003529671.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Glycine max] Back     alignment and taxonomy information
>gi|356562481|ref|XP_003549499.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Glycine max] Back     alignment and taxonomy information
>gi|255647952|gb|ACU24433.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297800500|ref|XP_002868134.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313970|gb|EFH44393.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240255938|ref|NP_567496.4| ferredoxin hydrogenase [Arabidopsis thaliana] gi|15020824|emb|CAC44620.1| Narf-like protein [Arabidopsis thaliana] gi|332658348|gb|AEE83748.1| ferredoxin hydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2130634474 NAR1 "homolog of yeast NAR1" [ 0.987 0.839 0.733 1.3e-164
UNIPROTKB|E1C8S8476 NARFL "Uncharacterized protein 0.930 0.787 0.485 3.4e-93
UNIPROTKB|A8WH18476 narfl "Cytosolic Fe-S cluster 0.910 0.771 0.481 1.7e-91
MGI|MGI:1914813476 Narfl "nuclear prelamin A reco 0.910 0.771 0.474 8.3e-90
UNIPROTKB|Q9H6Q4476 NARFL "Cytosolic Fe-S cluster 0.910 0.771 0.471 2.5e-88
RGD|1305982476 Narfl "nuclear prelamin A reco 0.888 0.752 0.482 3.2e-88
UNIPROTKB|Q5BK18476 Narfl "Cytosolic Fe-S cluster 0.888 0.752 0.482 3.2e-88
UNIPROTKB|Q5RF36476 NARFL "Cytosolic Fe-S cluster 0.910 0.771 0.468 1.1e-87
UNIPROTKB|A4FV58476 NARFL "Cytosolic Fe-S cluster 0.910 0.771 0.463 1.8e-87
DICTYBASE|DDB_G0291149522 DDB_G0291149 "nuclear prelamin 0.945 0.729 0.441 2.9e-87
TAIR|locus:2130634 NAR1 "homolog of yeast NAR1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1602 (569.0 bits), Expect = 1.3e-164, P = 1.3e-164
 Identities = 297/405 (73%), Positives = 353/405 (87%)

Query:     1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
             MLEKQSLDEFLS ++KGK V++S+SPQSRASLA H+ ISPLQVFKKLTTFLKSLGVK++F
Sbjct:    75 MLEKQSLDEFLSALSKGKDVVVSVSPQSRASLAVHYDISPLQVFKKLTTFLKSLGVKAVF 134

Query:    61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
             DTSCSRDL LIE+CNEF++RYKQ+   D E S S LP+LSSACPGWICYAEKQLGSY+LP
Sbjct:   135 DTSCSRDLVLIESCNEFVSRYKQANSDDGENSQSPLPVLSSACPGWICYAEKQLGSYVLP 194

Query:   121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
             Y+SSVKSPQQ IGA IKHH+CQ LG R  E+YHVTVMPCYDKKLEAAR+DFVF   +Q  
Sbjct:   195 YVSSVKSPQQAIGAAIKHHLCQALGLRLHEVYHVTVMPCYDKKLEAARDDFVFDDGTQ-- 252

Query:   181 TYRDEG-LEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
                D G L++ EVDSVLTTGE++DLI+LK V+F+ LEESPLD++LTNV +EG LYGVAGS
Sbjct:   253 ---DNGDLKLTEVDSVLTTGEIMDLIKLKGVDFKDLEESPLDRVLTNVTEEGDLYGVAGS 309

Query:   240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
             SGGYAET+FRHAAK LFG+ IEG LEFKT+RNSDFREV L++EGKT+LKFALCYGFQNLQ
Sbjct:   310 SGGYAETIFRHAAKALFGQTIEGPLEFKTLRNSDFREVTLQLEGKTVLKFALCYGFQNLQ 369

Query:   300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML-AD 358
             NIVR+VK RKCDYQ+VE+MACP+GCLNGGGQIKPK GQS KELI +LE  Y+ +  L  D
Sbjct:   370 NIVRRVKTRKCDYQYVEIMACPAGCLNGGGQIKPKTGQSQKELIHSLEATYMNDTTLNTD 429

Query:   359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
             P++NP  + L++EWL++PGS +AKK++HT+YHPVVKS+T+QL+NW
Sbjct:   430 PYQNPTAKRLFEEWLKEPGSNEAKKYLHTQYHPVVKSVTSQLNNW 474
GO:0005634 "nucleus" evidence=ISM
GO:0008901 "ferredoxin hydrogenase activity" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0007059 "chromosome segregation" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0009410 "response to xenobiotic stimulus" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0048522 "positive regulation of cellular process" evidence=RCA
UNIPROTKB|E1C8S8 NARFL "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A8WH18 narfl "Cytosolic Fe-S cluster assembly factor narfl" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
MGI|MGI:1914813 Narfl "nuclear prelamin A recognition factor-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H6Q4 NARFL "Cytosolic Fe-S cluster assembly factor NARFL" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305982 Narfl "nuclear prelamin A recognition factor-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5BK18 Narfl "Cytosolic Fe-S cluster assembly factor NARFL" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RF36 NARFL "Cytosolic Fe-S cluster assembly factor NARFL" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|A4FV58 NARFL "Cytosolic Fe-S cluster assembly factor NARFL" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291149 DDB_G0291149 "nuclear prelamin A recognition factor-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2RRV9NARFL_DANRENo assigned EC number0.50650.89080.8734yesno
Q9N392NARF_CAEELNo assigned EC number0.33080.91310.8052yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XVI000014
hypothetical protein (471 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.8947.1.1
Predicted protein (324 aa)
•     • 0.586
estExt_fgenesh4_pg.C_LG_X0463
hypothetical protein (485 aa)
•     • 0.570
estExt_fgenesh4_pm.C_LG_V0527
hypothetical protein (254 aa)
•     • 0.530
estExt_Genewise1_v1.C_LG_II0234
hypothetical protein (254 aa)
•     • 0.525

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
pfam02906272 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase larg 1e-104
TIGR02512374 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, grou 3e-72
COG4624411 COG4624, COG4624, Iron only hydrogenase large subu 3e-68
TIGR04105462 TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, gro 6e-24
smart0090252 smart00902, Fe_hyd_SSU, Iron hydrogenase small sub 2e-08
pfam0225660 pfam02256, Fe_hyd_SSU, Iron hydrogenase small subu 3e-08
>gnl|CDD|217280 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit, C-terminal domain Back     alignment and domain information 
 Score =  309 bits (793), Expect = e-104
 Identities = 110/315 (34%), Positives = 164/315 (52%), Gaps = 44/315 (13%)

Query: 18  KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
           K V+  ++P  R +  E FG+ P  V  KL   L+ LG   +FDT+   DLT++E  +EF
Sbjct: 1   KKVVAQIAPAVRVAFGEEFGLPPGTVTGKLVAALRKLGFDYVFDTAFGADLTIMEEASEF 60

Query: 78  IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
           + R K             LPM +S CP W+ Y EK     +LP +S+ KSP Q  GA IK
Sbjct: 61  LERLK---------KGEKLPMFTSCCPAWVKYVEKYYPE-LLPNLSTCKSPMQMFGALIK 110

Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
                     P +I+ V++MPC  KK EAAR +F                   +VD+VLT
Sbjct: 111 TD--------PPDIFVVSIMPCTAKKFEAARPEFKG-----------------DVDAVLT 145

Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
           T E+  +I+   ++F +LE+   D  L      G ++GV   +GG  E   R A + L G
Sbjct: 146 TRELAAMIKEAGIDFASLEDEEFDSPLGESSGAGRIFGV---TGGVMEAALRTAYELLTG 202

Query: 258 KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
           K +  ++EFK +R  +  +E  +++E    +K A+  G +N + ++ K+K  + DY F+E
Sbjct: 203 KELP-NIEFKQVRGLEGIKEATVDIE----VKVAVVSGLKNARKLLEKIKAGEIDYHFIE 257

Query: 317 VMACPSGCLNGGGQI 331
           VMACP GC+ GGGQ 
Sbjct: 258 VMACPGGCIGGGGQP 272

Length = 272
>gnl|CDD|233903 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, group A Back     alignment and domain information
>gnl|CDD|226972 COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|234472 TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, group B1/B3 Back     alignment and domain information
>gnl|CDD|214899 smart00902, Fe_hyd_SSU, Iron hydrogenase small subunit Back     alignment and domain information
>gnl|CDD|190260 pfam02256, Fe_hyd_SSU, Iron hydrogenase small subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
KOG2439459 consensus Nuclear architecture related protein [Nu 100.0
COG4624411 Iron only hydrogenase large subunit, C-terminal do 100.0
PF02906285 Fe_hyd_lg_C: Iron only hydrogenase large subunit, 100.0
TIGR02512374 Fe_only_hydrog hydrogenases, Fe-only. This model d 100.0
PF0225660 Fe_hyd_SSU: Iron hydrogenase small subunit; InterP 99.33
>KOG2439 consensus Nuclear architecture related protein [Nuclear structure] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-102  Score=757.14  Aligned_cols=379  Identities=47%  Similarity=0.828  Sum_probs=347.4

Q ss_pred             CcccccHHHHHHHHhCCC---eEEEEeCccchHHHHHHhCCChHHHHHHHHHHHHHcCCcEEEechhHHHHhHHHHHHHH
Q 015642            1 MLEKQSLDEFLSNINKGK---AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF   77 (403)
Q Consensus         1 l~~~qs~~~~~~~l~~~k---~~Vv~iaPq~r~sl~~~f~~~~~~~~~kl~~~lk~LGf~~V~dt~~gadi~~~e~~~E~   77 (403)
                      |+++||+.+|++.|+..|   .+||++|||+|+|||++||++..++..+|..|+|+|||+||+||++++++++.|.++||
T Consensus        78 lls~Qs~~~~~k~l~~~k~~~~lvvsvSPQ~~~slAa~~gls~~e~~~~L~~F~kklgvhyv~DT~~sR~~sl~es~~Ef  157 (459)
T KOG2439|consen   78 LLSEQSHKEFLKVLQKSKQQKVLVVSVSPQSRASLAAKYGLSLREAALRLTSFFKKLGVHYVVDTSFSRDFSLSESYEEF  157 (459)
T ss_pred             hhhhhhHHHHHHhhhhccccceEEEecChhHHHHHHHHhCCCHHHHHHHHHHHHHhcCeeEEeehHHHHHHHHHHHHHHH
Confidence            689999999999998876   77999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEE
Q 015642           78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM  157 (403)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~P~isS~CPgwV~yiEk~~~P~lip~Ls~vkSPq~i~g~liK~~~~~~~~~~~~~i~~V~I~  157 (403)
                      +.|++++..      ....||++|+|||||||+||+| |.||||||+|||||||||+|||.+++.+.+++|++||||++|
T Consensus       158 v~~~r~~~~------~~~~PlLsSaCPG~v~YaEkt~-~~Lip~ls~vkSPQQi~Gslikd~~~~q~~l~p~~v~hvsvM  230 (459)
T KOG2439|consen  158 VARYRQHSE------EERTPLLSSACPGWVCYAEKTH-GRLIPHLSRVKSPQQIMGSLIKDFFASQQSLSPEKVFHVSVM  230 (459)
T ss_pred             HHHhhcccc------cccccchhhcCCceeEEeeccc-cccchhhhccCCHHHhhhHHHHHHHHHhcCCCccceeeEeec
Confidence            998875432      2457999999999999999999 889999999999999999999999999999999999999999


Q ss_pred             ccchhhHhhhcchhhcccccchhccccCCCCCCCceEEEcHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCcccccc
Q 015642          158 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA  237 (403)
Q Consensus       158 PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLTt~El~~~l~~~~i~~~~l~~~~~d~~~~~~s~~~~~~~~~  237 (403)
                      ||+|||+||+|++|..             .+.++||||||++|+.+++++.++++.....+ .|..+...+........|
T Consensus       231 PCfDKKLEAsR~~f~~-------------~~~r~~DcVlT~~Ei~k~l~e~~~~l~~~~~~-~d~l~~~~~~~~~~~~~G  296 (459)
T KOG2439|consen  231 PCFDKKLEASREEFKE-------------HGVRDVDCVLTTGEIFKLLEELDFDLPVRDAE-VDTLPSGLSRETVTSNDG  296 (459)
T ss_pred             ccccHhhhccchhhhc-------------cCCcccceEeehHHHHHHHHhcCcccccccch-hhcccccccccceeeccC
Confidence            9999999999999951             15789999999999999999999998776544 455444444444556669


Q ss_pred             CCCccHHHHHHHHHHHHhhccccccccceeeecCCCcEEEEEEeCCeeeEEEEEEechHHHHHHHHHHhcCCCCCcEEEe
Q 015642          238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV  317 (403)
Q Consensus       238 ~~SGG~~e~i~~~~~~~l~~~~~~~~~~~~~~rn~d~~e~~l~~~g~~~~~~a~v~G~~ni~~~l~~lk~gk~~~~fIEv  317 (403)
                      |+||||+++|+|++++++||.++. ++.|+..||.||+|+++.-+|++++++|.+||||||||+++++++||.+||||||
T Consensus       297 gsSGGYa~~i~r~aak~lfg~~v~-~~t~k~~rN~Df~e~tl~~~geill~~a~~yGFRNiQNlvrklkk~k~pyhyvEV  375 (459)
T KOG2439|consen  297 GSSGGYAEHIFRHAAKELFGEIVE-PVTYKELRNSDFREVTLEKNGEILLRFAAAYGFRNIQNLVRKLKKGKFPYHYVEV  375 (459)
T ss_pred             CCCcchHHHHHHHHHHHhcCCccc-chhhhhhccccceeeeeecCchHHHHHHHhhhhhHHHHHHHHHhccCCCcceeEE
Confidence            999999999999999999999885 8899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCcCCCCCCChhHHHHHHHHHHhhcccCCCCCCChHHHHHHHHHhcCCCChhhhcceeeeecccccccc
Q 015642          318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSIT  397 (403)
Q Consensus       318 mACpgGCinGgGq~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~n~~v~~ly~~~l~~~~~~~~~~llht~y~~~~~~~~  397 (403)
                      |||||||+|||||++.++...+++++++++++|.+.+. +.+...|.+.+||++|+.+ ++..+.++|||+||+|+++.+
T Consensus       376 mACpgGC~NGgGQl~~~~~~~~~~llq~ve~ly~e~~~-~~~e~~~~~~~L~E~w~k~-~~~~~r~~Lht~y~avek~~~  453 (459)
T KOG2439|consen  376 MACPGGCINGGGQLQTPDGHARKELLQQVEALYGEIPR-RRDESSPTVPKLEEEWLKG-DSKKARKVLHTDYQAVEKDVT  453 (459)
T ss_pred             eccCccccCCCccccCCccchHHHHHHHHHHhhccCcc-ccCccccchhHHHHHHHhc-Cchhhhhhhcccchhhhcchh
Confidence            99999999999999988878889999999999988877 4555668999999999998 778899999999999999999


Q ss_pred             cccCCC
Q 015642          398 AQLHNW  403 (403)
Q Consensus       398 ~~~~~w  403 (403)
                      +..++|
T Consensus       454 sl~~kW  459 (459)
T KOG2439|consen  454 SLGNKW  459 (459)
T ss_pred             hhccCC
Confidence            988899

>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only] Back     alignment and domain information
>PF02906 Fe_hyd_lg_C: Iron only hydrogenase large subunit, C-terminal domain; InterPro: IPR004108 Proteins containing this domain may be involved in the mechanism of biological hydrogen activation and contain 4FE-4S clusters Back     alignment and domain information
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only Back     alignment and domain information
>PF02256 Fe_hyd_SSU: Iron hydrogenase small subunit; InterPro: IPR003149 Many microorganisms, such as methanogenic, acetogenic, nitrogen-fixing, photosynthetic, or sulphate-reducing bacteria, metabolise hydrogen Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
3lx4_A457 Stepwise [fefe]-Hydrogenase H-Cluster Assembly Reve 1e-43
1feh_A574 Fe-Only Hydrogenase From Clostridium Pasteurianum L 1e-40
1hfe_L421 1.6 A Resolution Structure Of The Fe-Only Hydrogena 2e-30
1e08_A371 Structural Model Of The [fe]-HydrogenaseCYTOCHROME 3e-30
>pdb|3LX4|A Chain A, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In The Structure Of Hyda(Deltaefg) Length = 457 Back     alignment and structure 
Iteration: 1

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 194/423 (45%), Gaps = 73/423 (17%)
Query: 18  KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
           K V + ++P  R ++AE  G++P     K+L   L+ LG   +FDT    DLT++E  +E
Sbjct: 45  KHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGSE 104
Query: 77  FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGA 134
            + R  +  E+    S+  LPM +S CPGWI   EK   SY  ++PY+SS KSPQ  + A
Sbjct: 105 LLHRLTEHLEAH-PHSDEPLPMFTSCCPGWIAMLEK---SYPDLIPYVSSCKSPQMMLAA 160
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
            +K ++ +K G  P ++  V++MPC  K+ EA R+ F    D    T R       ++D 
Sbjct: 161 MVKSYLAEKKGIAPKDMVMVSIMPCTRKQSEADRDWFCVDADP---TLR-------QLDH 210
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
           V+TT E+ ++ + + +N   L E   D  +      G L+   G++GG  E   R A + 
Sbjct: 211 VITTVELGNIFKERGINLAELPEGEWDNPMGVGSGAGVLF---GTTGGVMEAALRTAYEL 267
Query: 255 LFGKVIEGHLEFKTIRNSD----------------FREV--------------------- 277
             G  +   L    +R  D                F E+                     
Sbjct: 268 FTGTPLP-RLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLA 326
Query: 278 --------ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 329
                   + +  G   L+ A+  G  N + ++ K++  +  Y FVE+MACP+GC+ GGG
Sbjct: 327 WDGGAGFTSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGG 386
Query: 330 QIKPKPGQSPKELIKTLETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 386
           Q    P  + K + +  +       E   L    +NP +R LYD +L +P   KA + +H
Sbjct: 387 Q----PRSTDKAITQKRQAALYNLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLH 442
Query: 387 TEY 389
           T Y
Sbjct: 443 THY 445
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum Length = 574 Back     alignment and structure
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From Desulfovibrio Desulfuricans Length = 421 Back     alignment and structure
>pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553 Complex Combining Nmr And Soft-Docking Length = 371 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
3c8y_A574 Iron hydrogenase 1; dithiomethylether, H-cluster, 1e-135
3lx4_A457 Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, 1e-128
1hfe_L421 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg 1e-125
1hfe_S123 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smal 7e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Length = 574 Back     alignment and structure
 Score =  397 bits (1021), Expect = e-135
 Identities = 116/395 (29%), Positives = 184/395 (46%), Gaps = 35/395 (8%)

Query: 3   EKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIF 60
           EK  +D   + +N   K VI++++P  RAS+ E F +   + V  K+ T L+ LG   IF
Sbjct: 207 EKSHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIF 266

Query: 61  DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
           D +   D+T++E   E + R +         +N   PM +S CPGW+  AE      +L 
Sbjct: 267 DINFGADMTIMEEATELVQRIE---------NNGPFPMFTSCCPGWVRQAENYYPE-LLN 316

Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
            +SS KSPQQ  G   K +     G  P  ++ VTVMPC  KK EA R            
Sbjct: 317 NLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQM--------- 367

Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
               +G  + ++D+V+TT E+  +I+   + F  LE+S  D  +      G ++G    +
Sbjct: 368 --EKDG--LRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGA---T 420

Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
           GG  E   R A        +E  +E+K +R  +  +E  +E+        A+  G  NL 
Sbjct: 421 GGVMEAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEINNNKY-NVAVINGASNLF 478

Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVM 355
             ++   + +  Y F+EVMAC  GC+NGGGQ    P    K  IK +    L    E++ 
Sbjct: 479 KFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASVLYNQDEHLS 538

Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
                +N  +  +Y  +  +PG  +A + +H +Y 
Sbjct: 539 KRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYK 573
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii} Length = 457 Back     alignment and structure
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Length = 421 Back     alignment and structure
>1hfe_S Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smaller subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: a.137.4.1 PDB: 1e08_D* 1gx7_D* Length = 123 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
3lx4_A457 Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, 100.0
3c8y_A574 Iron hydrogenase 1; dithiomethylether, H-cluster, 100.0
1hfe_L421 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg 100.0
1q16_B512 Respiratory nitrate reductase 1 beta chain; membra 99.86
1hfe_S123 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smal 99.79
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii} Back     alignment and structure
Probab=100.00  E-value=3.9e-105  Score=809.06  Aligned_cols=374  Identities=31%  Similarity=0.575  Sum_probs=333.4

Q ss_pred             ccccHHHHHHHHhCC------CeEEEEeCccchHHHHHHhCCChHHH-HHHHHHHHHHcCCcEEEechhHHHHhHHHHHH
Q 015642            3 EKQSLDEFLSNINKG------KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN   75 (403)
Q Consensus         3 ~~qs~~~~~~~l~~~------k~~Vv~iaPq~r~sl~~~f~~~~~~~-~~kl~~~lk~LGf~~V~dt~~gadi~~~e~~~   75 (403)
                      +.+++++|+++|+++      |++||+||||+|++|+++||+++++. .++|+++||+|||++||||++|||++++|+++
T Consensus        24 ~~~~~~~v~~aL~~~~~~~~~k~vVasvAPavrasl~~~FGl~~~~~t~gkl~~aLk~LGFd~VfDta~gADlti~EEa~  103 (457)
T 3lx4_A           24 PLSHVQQALAELAKPKDDPTRKHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGS  103 (457)
T ss_dssp             -CCHHHHHHHHHHSCTTCTTCCEEEEEECHHHHHHGGGGGTCCTTCSCHHHHHHHHHHTTCSEEEETHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHhCcCcccCCceEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHH
Confidence            567899999999885      68999999999999999999988775 69999999999999999999999999999999


Q ss_pred             HHHHHHhhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEE
Q 015642           76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT  155 (403)
Q Consensus        76 E~~~~~~~~~~~~~~~~~~~~P~isS~CPgwV~yiEk~~~P~lip~Ls~vkSPq~i~g~liK~~~~~~~~~~~~~i~~V~  155 (403)
                      ||++|+++..... .....++||||||||||||||||+| |+|+||||+++|||||+|+++|+|++++.|++|++|+|||
T Consensus       104 Ef~~r~~~~l~~~-~~~~~~lPmiTScCPgWV~yiEk~y-PeLlp~LSt~kSPqqm~G~liK~y~a~~~gi~p~~i~vV~  181 (457)
T 3lx4_A          104 ELLHRLTEHLEAH-PHSDEPLPMFTSCCPGWIAMLEKSY-PDLIPYVSSCKSPQMMLAAMVKSYLAEKKGIAPKDMVMVS  181 (457)
T ss_dssp             HHHHHHHHHHCC------CCSSEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             HHHHHHHhhhccc-cccCCCCceEecCCHHHHHHHHHhC-cccccccCCCCCHHHHHHHHHHHHHHHhcCCCcccEEEEE
Confidence            9999985321100 0013578999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             EEccchhhHhhhcchhhcccccchhccccCCCCCCCceEEEcHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCcccc
Q 015642          156 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG  235 (403)
Q Consensus       156 I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLTt~El~~~l~~~~i~~~~l~~~~~d~~~~~~s~~~~~~~  235 (403)
                      ||||+|||+||.|++|....          ..+.++|||||||+||.+||++.+||+.++++.++|.+++..++.|++||
T Consensus       182 ImPC~AKK~EA~R~e~~~~~----------~~g~~dVD~VLTtrEL~~mik~~gId~~~l~~~~~D~p~g~~sgaG~iFg  251 (457)
T 3lx4_A          182 IMPCTRKQSEADRDWFCVDA----------DPTLRQLDHVITTVELGNIFKERGINLAELPEGEWDNPMGVGSGAGVLFG  251 (457)
T ss_dssp             EESCSSHHHHHTCTTCBCC-------------CCBSSCEEEEHHHHHHHHHHTTCCGGGSCCCCCCCTTSSSSSCSCCSS
T ss_pred             EEcccchHHHhcCccccccc----------ccCCccccEEeeHHHHHHHHHHcCCChhhCCcccccccccccCCCceecC
Confidence            99999999999999884310          11467999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccHHHHHHHHHHHHhhccccccccceeeecCCC-cEEEEEEe---------------------------------
Q 015642          236 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV---------------------------------  281 (403)
Q Consensus       236 ~~~~SGG~~e~i~~~~~~~l~~~~~~~~~~~~~~rn~d-~~e~~l~~---------------------------------  281 (403)
                      .   ||||+|+++|++++.++|.++ ..++|+.+||.| |+|+++.+                                 
T Consensus       252 ~---sGGV~EAv~r~a~~~~~g~~~-~~~~~~~vrg~~g~kea~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (457)
T 3lx4_A          252 T---TGGVMEAALRTAYELFTGTPL-PRLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLAW  327 (457)
T ss_dssp             B---CCCHHHHHHHHHHHHHHSSCC-CCCCCEECTTCTTEEEEEEEECCCTTSHHHHHHHHCCC-----------CCSCC
T ss_pred             C---cccHHHHHHHHHHHHhhCCCC-ccccceeecCCCCceEEEEEeccccccchhhhhhhhhhhhhccccccccccccc
Confidence            8   999999999999999999988 478999999975 99999887                                 


Q ss_pred             ---------C--CeeeEEEEEEechHHHHHHHHHHhcCCCCCcEEEecCCcccccCCCCCcCCCCCCChhHHHHHHHHHH
Q 015642          282 ---------E--GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY  350 (403)
Q Consensus       282 ---------~--g~~~~~~a~v~G~~ni~~~l~~lk~gk~~~~fIEvmACpgGCinGgGq~~~~~~~~~~~~~~~~~~~y  350 (403)
                               +  |...+++|+||||+|++++|++|++|+++|||||||||||||||||||+++..   .....+|++.+|
T Consensus       328 ~~~~~~~~~~~~~g~~l~vav~~G~~n~~~ll~~~k~G~~~y~fVEvMACPgGCi~GgGQp~~~~---~~~~~~r~~~ly  404 (457)
T 3lx4_A          328 DGGAGFTSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGGQPRSTD---KAITQKRQAALY  404 (457)
T ss_dssp             CSCEEECCTTCCCEEEEEEEEEESHHHHHHHHHHHHHTSSCCSEEEEESSTTCGGGCTTSCCCSC---TTHHHHHHHTSS
T ss_pred             ccccccccccCCCCeEEEEEEEcCHHHHHHHHHHHHcCCCCccEEEECCCCccccCCcccccccc---HHHHHHHHHHHH
Confidence                     1  34458999999999999999999999999999999999999999999999864   234455888899


Q ss_pred             hhc--ccCCCCCCChHHHHHHHHHhcCCCChhhhcceeeeecccccc
Q 015642          351 LEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS  395 (403)
Q Consensus       351 ~~~--~~~~~~~~n~~v~~ly~~~l~~~~~~~~~~llht~y~~~~~~  395 (403)
                      ..+  ..+|.|++||.|++||++||++|+++++|+||||+|+++.+.
T Consensus       405 ~~d~~~~~r~s~eNp~v~~lY~~~l~~p~s~~ah~lLHT~y~~~~~~  451 (457)
T 3lx4_A          405 NLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLHTHYVAGGVE  451 (457)
T ss_dssp             CHHHHTSBCCGGGCHHHHHHHHHTTCSTTSHHHHHHHBCCCCTTCC-
T ss_pred             HHhhcCCccCCCcCHHHHHHHHHHhCCCCcHHHHHhcCccccccCcc
Confidence            743  467999999999999999999999999999999999998764
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Back     alignment and structure
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Back     alignment and structure
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B* Back     alignment and structure
>1hfe_S Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smaller subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: a.137.4.1 PDB: 1e08_D* 1gx7_D* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d3c8ya1365 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalyti 1e-114
d1hfel1312 c.96.1.1 (L:87-398) Fe-only hydrogenase larger sub 1e-104
d1hfes_88 a.137.4.1 (S:) Fe-only hydrogenase smaller subunit 2e-11
d1y5ib1509 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 2e-08
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} Length = 365 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Fe-only hydrogenase
superfamily: Fe-only hydrogenase
family: Fe-only hydrogenase
domain: Fe-only hydrogenase, catalytic domain
species: Clostridium pasteurianum [TaxId: 1501]

 Score =  335 bits (859), Expect = e-114
 Identities = 113/390 (28%), Positives = 180/390 (46%), Gaps = 35/390 (8%)

Query: 7   LDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSC 64
           +D   + +N   K VI++++P  RAS+ E F +     V  K+ T L+ LG   IFD + 
Sbjct: 2   MDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINF 61

Query: 65  SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
             D+T++E   E + R +         +N   PM +S CPGW+  AE      +   +SS
Sbjct: 62  GADMTIMEEATELVQRIE---------NNGPFPMFTSCCPGWVRQAENYYPELL-NNLSS 111

Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
            KSPQQ  G   K +     G  P  ++ VTVMPC  KK EA R                
Sbjct: 112 AKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQM------------- 158

Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYA 244
           E   + ++D+V+TT E+  +I+   + F  LE+S  D  +      G ++G   ++GG  
Sbjct: 159 EKDGLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFG---ATGGVM 215

Query: 245 ETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVR 303
           E   R A        +E  +E+K +R  +  +E  +E+        A+  G  NL   ++
Sbjct: 216 EAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEINNNKY-NVAVINGASNLFKFMK 273

Query: 304 KVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADP 359
              + +  Y F+EVMAC  GC+NGGGQ    P    K  IK +    L    E++     
Sbjct: 274 SGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASVLYNQDEHLSKRKS 333

Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
            +N  +  +Y  +  +PG  +A + +H +Y
Sbjct: 334 HENTALVKMYQNYFGKPGEGRAHEILHFKY 363
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit, C-domain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 312 Back     information, alignment and structure
>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit {Desulfovibrio desulfuricans [TaxId: 876]} Length = 88 Back     information, alignment and structure
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} Length = 509 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d3c8ya1365 Fe-only hydrogenase, catalytic domain {Clostridium 100.0
d1hfel1312 Fe-only hydrogenase larger subunit, C-domain {Desu 100.0
d1y5ib1509 Respiratory nitrate reductase 1 beta chain {Escher 99.92
d1hfes_88 Fe-only hydrogenase smaller subunit {Desulfovibrio 99.27
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Fe-only hydrogenase
superfamily: Fe-only hydrogenase
family: Fe-only hydrogenase
domain: Fe-only hydrogenase, catalytic domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=100.00  E-value=3.2e-98  Score=748.98  Aligned_cols=357  Identities=31%  Similarity=0.561  Sum_probs=323.9

Q ss_pred             HHHHHHHHhCC-CeEEEEeCccchHHHHHHhCCChH-HHHHHHHHHHHHcCCcEEEechhHHHHhHHHHHHHHHHHHhhc
Q 015642            7 LDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPL-QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS   84 (403)
Q Consensus         7 ~~~~~~~l~~~-k~~Vv~iaPq~r~sl~~~f~~~~~-~~~~kl~~~lk~LGf~~V~dt~~gadi~~~e~~~E~~~~~~~~   84 (403)
                      +++++++|+++ |.+||+||||+|+||+++||++++ .+.++|.++||+|||++||||++|||+++.|+++||++|+++ 
T Consensus         2 i~~v~~~l~~~~k~vV~siaP~~r~sla~~f~l~~~~~~~~kl~~~lk~LGF~~V~dt~~gad~~~~e~~~E~~~r~~~-   80 (365)
T d3c8ya1           2 MDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIEN-   80 (365)
T ss_dssp             HHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhCCCcEEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHHHHHHHhc-
Confidence            68999999886 569999999999999999999874 456999999999999999999999999999999999999874 


Q ss_pred             ccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEEccchhhH
Q 015642           85 QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL  164 (403)
Q Consensus        85 ~~~~~~~~~~~~P~isS~CPgwV~yiEk~~~P~lip~Ls~vkSPq~i~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~  164 (403)
                              +.++||||||||||||||||+| |+|+||||+|+|||||+|+++|+++++..|+++++|||||||||+|||+
T Consensus        81 --------~~~~P~isS~CPg~V~yiEk~~-PeLip~ls~v~SP~~~~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~  151 (365)
T d3c8ya1          81 --------NGPFPMFTSCCPGWVRQAENYY-PELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKF  151 (365)
T ss_dssp             --------TCSCCEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSHHHH
T ss_pred             --------CCCCCeEEeCCHHHHHHHHHhC-hhhhccccCCCCHHHHHHHHHHHHHHHhcCCCcccEEEEEEecccchhh
Confidence                    4679999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             hhhcchhhcccccchhccccCCCCCCCceEEEcHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccccCCCccHH
Q 015642          165 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYA  244 (403)
Q Consensus       165 Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLTt~El~~~l~~~~i~~~~l~~~~~d~~~~~~s~~~~~~~~~~~SGG~~  244 (403)
                      ||+|++|...             +.++|||||||+||.+||++.+|++..++++++|.++...++.+.+|+.   |||++
T Consensus       152 Ea~r~e~~~~-------------~~~dVD~VLT~~El~~~l~~~~i~~~~l~~~~~~~~~~~~s~~g~~~~~---sGG~~  215 (365)
T d3c8ya1         152 EADRPQMEKD-------------GLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGA---TGGVM  215 (365)
T ss_dssp             HHTCTTSEET-------------TEESCSEEEEHHHHHHHHHHTTCCGGGCCCCCCCGGGTCCCHHHHTTTS---TTHHH
T ss_pred             hhcCcccccC-------------CCCCcCEEeeHHHHHHHHHHcCCChhhCCCcccCCccCCCCcccceeec---cccHH
Confidence            9999988432             3578999999999999999999999999999999988888888888887   99999


Q ss_pred             HHHHHHHHHHhhccccccccceeeecCC-CcEEEEEEeCCeeeEEEEEEechHHHHHHHHHHhcCCCCCcEEEecCCccc
Q 015642          245 ETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG  323 (403)
Q Consensus       245 e~i~~~~~~~l~~~~~~~~~~~~~~rn~-d~~e~~l~~~g~~~~~~a~v~G~~ni~~~l~~lk~gk~~~~fIEvmACpgG  323 (403)
                      +++++++.+.+++.++. .++|+.+||. +++++++.++|.+ +++++|+||+|++++|++++.|+.+|||||+||||||
T Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~~~~rg~~~i~~~~~~~~~~~-~~~~~v~G~~n~~~~l~~~k~~~~~~~fvEvmACpgG  293 (365)
T d3c8ya1         216 EAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEINNNK-YNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGG  293 (365)
T ss_dssp             HHHHHHHHHHHHTCCCS-CCCCGGGCSSCSEEEEEEEETTEE-EEEEEEESHHHHHHHHHTSGGGSSCCCEEEEESSTTS
T ss_pred             HHHHHHHHHhccCCccc-cceeeeccCCCceEEEEEEeCCcE-EEEEEehhHHHHHHHHHHHhcCCCCCeEEEEecCCCC
Confidence            99999999999999884 6889999985 5999999999886 6999999999999999999999999999999999999


Q ss_pred             ccCCCCCcCCCCCCChh--HHHHHHHHHHhhc--ccCCCCCCChHHHHHHHHHhcCCCChhhhcceeeeecc
Q 015642          324 CLNGGGQIKPKPGQSPK--ELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP  391 (403)
Q Consensus       324 CinGgGq~~~~~~~~~~--~~~~~~~~~y~~~--~~~~~~~~n~~v~~ly~~~l~~~~~~~~~~llht~y~~  391 (403)
                      |+|||||++.......+  ....|.+.+|..+  ..++.|++||.+++||++||++|+++++|+||||+|+.
T Consensus       294 CinGgGq~~~~~~~~~~~~~~~~r~~~l~~~d~~~~~r~~~en~~~~~ly~~~l~~p~~~~~~~lLHT~y~~  365 (365)
T d3c8ya1         294 CVNGGGQPHVNPKDLEKVDIKKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYKK  365 (365)
T ss_dssp             GGGCTTSCCCCHHHHHHSCHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHSBCCCCC
T ss_pred             CcCCCCcCCCCcchhhhHHHHHHHHHHHHhhhhcCCCCCCccCHHHHHHHHHHhCCCCcHHHHHHhcCCccC
Confidence            99999999865421111  2344667777643  46688999999999999999999999999999999974
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit, C-domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure