Citrus Sinensis ID: 015650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR
Secondary Structure (PSIPRED)
cccEEEcccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEEccEEEEEEccccEEEEEEEEEcccccEEEEEEccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccEEEEEcccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHHHcccccccccEEHHHHHHcccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEcccHHHEEEEccccccccEEEEccccccEEEEEccccccEEEEEEcccccccEEEccccHHHEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccHcccccccEEEEEccccccEEEEEEccccEEEEEEcccc
Coil and Loop (DISEMBL)
maalsaysspwpeptpdpnpnpnpnsntscgvssedqtDQLQSlesfssmpqdepdsfspsipesnpnyqmplpspaestsssppptllhisfnqdhgcfaagtdhgfriyncdpfrEIFRRDFERGGGIGVVEMLFRCNILalvgggpdpqyplnkvmiwddhqsrcigeLSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIanpkglcavsqgVGSLVLvcpglqkgqvRVEHYASKRTKFIMAHDSRIACFAltqdgqllatsstkGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLavssdkgtVHVFNLkvnsgsarseprstsdptlptsslsfikgvlpkyfssewSVAQFRLVegspyivafghqKNTVVILGMDGR
Flexible Loop (DISEMBL)
MAAlsaysspwpeptpdpnpnpnPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGElsfrsevrsvklrrdriivvlEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLatsstkgtlVRIFNtldgtllqEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKvnsgsarseprstsdptlptsslSFIKGVLPKYFSSEWSVAQFRLVEGSPYIvafghqkntvvilgmdgr
Low Complexity Region (SEG)
MAALSAYsspwpeptpdpnpnpnpnsntsCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMplpspaestsssppptllHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRstsdptlptsslsFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR
Disordered region (IsUnstruct)
***************************************************************************************LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK**********************LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG****
Disordered Region (DISOPRED)
***************************************************************************************LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN****************************KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG*
Disordered Region (DISEMBL)
******************NPNPNPNSN**************QSLE***************SIPESNPNYQMP************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV*****************PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR
Disordered Region (DISPRO)
*AALSAYSSPWPEPTPDPNP*****SN***************S*****************************************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV***********************FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q640T2	344	WD repeat domain phosphoi	yes	no	0.744	0.872	0.468	4e-77
Q9CR39	344	WD repeat domain phosphoi	yes	no	0.744	0.872	0.471	1e-76
Q5MNZ6	344	WD repeat domain phosphoi	yes	no	0.744	0.872	0.471	1e-76
Q5ZL16	344	WD repeat domain phosphoi	yes	no	0.744	0.872	0.468	2e-76
Q68F45	344	WD repeat domain phosphoi	N/A	no	0.744	0.872	0.468	2e-76
Q5R7W0	344	WD repeat domain phosphoi	yes	no	0.744	0.872	0.468	1e-75
Q7ZUW6	344	WD repeat domain phosphoi	yes	no	0.744	0.872	0.459	4e-75
Q9Y484	360	WD repeat domain phosphoi	no	no	0.749	0.838	0.376	3e-55
Q91VM3	360	WD repeat domain phosphoi	no	no	0.754	0.844	0.375	1e-54
Q6DCV0	355	WD repeat domain phosphoi	N/A	no	0.749	0.850	0.368	1e-53

>sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1

 Score =  288 bits (738), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 205/318 (64%), Gaps = 18/318 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDG 402
           + AFG + N+V+ +  DG
Sbjct: 298 VCAFGTEPNSVIAICADG 315

Xenopus tropicalis (taxid: 8364)

>sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2

 Score =  287 bits (734), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/318 (47%), Positives = 204/318 (64%), Gaps = 18/318 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDG 402
           I AFG + N V+ +  DG
Sbjct: 298 ICAFGTEPNAVIAICADG 315

Mus musculus (taxid: 10090)

>sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2

 Score =  286 bits (733), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/318 (47%), Positives = 204/318 (64%), Gaps = 18/318 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDG 402
           I AFG + N V+ +  DG
Sbjct: 298 ICAFGTEPNAVIAICADG 315

Homo sapiens (taxid: 9606)

>sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1

 Score =  286 bits (732), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 204/318 (64%), Gaps = 18/318 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   A+  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDG 402
           I AFG + N V+ +  DG
Sbjct: 298 ICAFGTEPNAVLAICADG 315

Gallus gallus (taxid: 9031)

>sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1

 Score =  286 bits (732), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 204/318 (64%), Gaps = 18/318 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +  VEMLFRCN LALVGG
Sbjct: 13  LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VSYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDG 402
           I AFG + N+V+ +  DG
Sbjct: 298 ICAFGTEPNSVIAICADG 315

Xenopus laevis (taxid: 8355)

>sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1

 Score =  283 bits (725), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 203/318 (63%), Gaps = 18/318 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY +  + +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINSNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDG 402
           I AFG + N V+ +  DG
Sbjct: 298 ICAFGTEPNAVIAICADG 315

Pongo abelii (taxid: 9601)

>sp|Q7ZUW6|WIPI3_DANRE WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45b PE=2 SV=1

 Score =  282 bits (721), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 146/318 (45%), Positives = 200/318 (62%), Gaps = 18/318 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  + +F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  P    G V++   A+  K    I AH+  + C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLANTEKPPVDIPAHEGVLCCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
            L   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 TLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDG 402
           + AFG + N V+ +  DG
Sbjct: 298 VCAFGTEPNAVIAICADG 315

Danio rerio (taxid: 7955)

>sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1

 Score =  216 bits (549), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 187/329 (56%), Gaps = 27/329 (8%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
           + FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVGGG  
Sbjct: 12  LRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSS 71

Query: 151 PQYPLNKVMIWDD------HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL 204
           P++    V+IWDD       + + + E +F   V SV++R D+I++VL+ +I+VY+F D 
Sbjct: 72  PKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDN 131

Query: 205 -KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------IMAH 257
            + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         I AH
Sbjct: 132 PRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAH 191

Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317
            S IAC +L Q G ++A++S KGTL+R+F+T     L E+RRG D A +Y + FS ++ +
Sbjct: 192 QSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSF 251

Query: 318 LAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR 377
           L  SSDKGTVH+F LK    + RS            + +  +  ++ +Y  S+WS+A F 
Sbjct: 252 LCASSDKGTVHIFALKDTRLNRRS----------ALARVGKVGPMIGQYVDSQWSLASFT 301

Query: 378 LVEGSPYIVAFGHQK----NTVVILGMDG 402
           +   S  I AFG       N+V+ + +DG
Sbjct: 302 VPAESACICAFGRNTSKNVNSVIAICVDG 330

Homo sapiens (taxid: 9606)

>sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/333 (37%), Positives = 188/333 (56%), Gaps = 29/333 (8%)

Query: 87  TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG 146
           T LH  FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVG
Sbjct: 10  TSLH--FNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVG 67

Query: 147 GGPDPQYPLNKVMIWDD------HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYN 200
           GG  P++    V+IWDD       + + + E +F   V +V++R D+I++VL  +I+VY+
Sbjct: 68  GGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYS 127

Query: 201 FADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------ 253
           F D  + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         
Sbjct: 128 FPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFT 187

Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313
           I AH S +AC +L Q G ++A++S KGTL+R+F+T     L E+RRG D A +Y + FS 
Sbjct: 188 INAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSH 247

Query: 314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSV 373
           ++ +L  SSDKGTVH+F LK    + RS            + +  +  ++ +Y  S+WS+
Sbjct: 248 DSSFLCASSDKGTVHIFALKDTRLNRRS----------ALARVGKVGPMIGQYVDSQWSL 297

Query: 374 AQFRLVEGSPYIVAFGHQK----NTVVILGMDG 402
           A F +   S  I AFG       N+V+ + +DG
Sbjct: 298 ASFTVPAESACICAFGRNTSKNVNSVIAICVDG 330

Mus musculus (taxid: 10090)

>sp|Q6DCV0|WIPI4_XENLA WD repeat domain phosphoinositide-interacting protein 4 OS=Xenopus laevis GN=wdr45 PE=2 SV=1

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 184/326 (56%), Gaps = 24/326 (7%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
           + FNQD  CF    + G RI+N +P  E    D E+ G +G VEML RCN+LALVGGG +
Sbjct: 10  LRFNQDQSCFCCAMETGVRIFNIEPLMEKGHLDQEQVGSVGQVEMLHRCNLLALVGGGSN 69

Query: 151 PQYPLNKVMIWDDH---QSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL-KL 206
           P++    V+IWDD    + + + E +F   V SV+LR D+I++ L+ +I+VY+F D    
Sbjct: 70  PKFSDISVLIWDDSRDGKDKLVLEFTFTKPVLSVRLRSDKIVIALKNRIYVYSFPDNPTK 129

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSR 260
           L + +T  NPKGLC +   +   +L+ PG + G +++    + +         I AH S 
Sbjct: 130 LFEFDTRDNPKGLCDLCPSLEKQLLIFPGHKCGSLQLVDLCNAKPGSSSAPFTINAHQSE 189

Query: 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320
           + C A+ Q G L+A++S KGTL+R+F+T     L E+RRG D A +Y + FS ++ +L  
Sbjct: 190 LGCLAINQQGTLVASASRKGTLIRLFDTQTREQLVELRRGTDPATLYCINFSHDSSFLCS 249

Query: 321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380
           SSDKGTVH+F LK    + RS            + +  +  ++ +Y  S+WS+A F +  
Sbjct: 250 SSDKGTVHIFALKDTKLNRRS----------ALARVGKVGPMIGQYVDSQWSLASFTVPA 299

Query: 381 GSPYIVAFGHQK----NTVVILGMDG 402
            S  I AFG       N+V+ + +DG
Sbjct: 300 ESACICAFGKNTSKNVNSVIAVCVDG 325

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
225436703	439	PREDICTED: WD repeat domain phosphoinosi	0.975	0.895	0.741	1e-169
240255692	396	transducin/WD40 domain-containing protei	0.957	0.974	0.750	1e-168
240255690	425	transducin/WD40 domain-containing protei	0.955	0.905	0.75	1e-166
255582144	447	WD-repeat protein, putative [Ricinus com	0.888	0.800	0.811	1e-163
297821186	432	AT3g62770/F26K9_200 [Arabidopsis lyrata	0.900	0.840	0.760	1e-162
7362757	432	putative protein [Arabidopsis thaliana]	0.955	0.891	0.718	1e-161
147775635	428	hypothetical protein VITISV_032850 [Viti	0.947	0.892	0.722	1e-161
225450815	425	PREDICTED: WD repeat domain phosphoinosi	0.841	0.797	0.814	1e-160
449436529	420	PREDICTED: WD repeat domain phosphoinosi	0.957	0.919	0.719	1e-159
224132364	352	predicted protein [Populus trichocarpa]	0.781	0.894	0.864	1e-158

>gi|225436703|ref|XP_002263976.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/418 (74%), Positives = 339/418 (81%), Gaps = 25/418 (5%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSD 348
           DGT LQEVRRGADRAE+YS+AFSS AQWLAVSSDKGTVHVF LKVNSGS    +    SD
Sbjct: 292 DGTRLQEVRRGADRAEVYSMAFSSTAQWLAVSSDKGTVHVFGLKVNSGSLGNDKSHGASD 351

Query: 349 PTLPTS----SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402
             L  +    SLSFIKGVLPKYFSSEWSVAQFRL EGS YIVAFGHQKNTVVILGMDG
Sbjct: 352 ANLAVASSGLSLSFIKGVLPKYFSSEWSVAQFRLHEGSQYIVAFGHQKNTVVILGMDG 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255692|ref|NP_001030918.4| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332646869|gb|AEE80390.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 310/413 (75%), Positives = 339/413 (82%), Gaps = 27/413 (6%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSDPT-- 350
            QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF LKVNSGS  +   R   D T  
Sbjct: 284 RQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGSQVKDSSRIAPDATPS 343

Query: 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403
            P+SSLS  KGVLP+YFSSEWSVAQFRLVEG+ YI AFGHQKNTVVILGMDGR
Sbjct: 344 SPSSSLSLFKGVLPRYFSSEWSVAQFRLVEGTQYIAAFGHQKNTVVILGMDGR 396

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255690|ref|NP_567132.4| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|14517420|gb|AAK62600.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|16323362|gb|AAL15394.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|332646868|gb|AEE80389.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 309/412 (75%), Positives = 338/412 (82%), Gaps = 27/412 (6%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSDPT-- 350
            QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF LKVNSGS  +   R   D T  
Sbjct: 284 RQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGSQVKDSSRIAPDATPS 343

Query: 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402
            P+SSLS  KGVLP+YFSSEWSVAQFRLVEG+ YI AFGHQKNTVVILGMDG
Sbjct: 344 SPSSSLSLFKGVLPRYFSSEWSVAQFRLVEGTQYIAAFGHQKNTVVILGMDG 395

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582144|ref|XP_002531866.1| WD-repeat protein, putative [Ricinus communis] gi|223528474|gb|EEF30503.1| WD-repeat protein, putative [Ricinus communis]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 306/377 (81%), Positives = 326/377 (86%), Gaps = 19/377 (5%)

Query: 40  QLQSLESFSS-MPQDE--PDSFSPSIPESNPNYQMPLPSPAESTSSSPPP----TLLHIS 92
           Q QS ++ SS MPQD   PD   P     NPNY       A+S+++SPP     +LLH+S
Sbjct: 46  QSQSYDTLSSIMPQDHCIPDHSDP-----NPNYHHHARPAADSSTTSPPSSPPISLLHLS 100

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPD 150
           FNQD GCFAAGTDHGFRIYNCDPFREIFRRDF+RGGG G  VVEMLFRCNILALVGGG D
Sbjct: 101 FNQDFGCFAAGTDHGFRIYNCDPFREIFRRDFDRGGGGGIGVVEMLFRCNILALVGGGSD 160

Query: 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
           PQYP NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI
Sbjct: 161 PQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 220

Query: 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
           ETIANPKGLCAVS G GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG
Sbjct: 221 ETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 280

Query: 271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
           QLLAT+STKGTLVR+FNT DG+LLQEVRRGADRAEIYS+AFSS AQWLAVSSDKGTVHVF
Sbjct: 281 QLLATASTKGTLVRVFNTADGSLLQEVRRGADRAEIYSVAFSSTAQWLAVSSDKGTVHVF 340

Query: 331 NLKVNSGSARSE-PRSTSDPTL----PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385
           +LK   GS  ++  R+T+DP +    PTSSLSF KGVLPKYFSSEWSVAQFRLVEGS YI
Sbjct: 341 SLKTTPGSLGTDRSRNTTDPNVGVSSPTSSLSFFKGVLPKYFSSEWSVAQFRLVEGSHYI 400

Query: 386 VAFGHQKNTVVILGMDG 402
           VAFGHQKNTVVILG+DG
Sbjct: 401 VAFGHQKNTVVILGLDG 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821186|ref|XP_002878476.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata] gi|297324314|gb|EFH54735.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 289/380 (76%), Positives = 315/380 (82%), Gaps = 17/380 (4%)

Query: 33  SSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHIS 92
           S  D+ D+  SL+SFSSM      S +   P  N N Q P+  P  +   +PPP++LH+S
Sbjct: 30  SHRDRGDETDSLDSFSSM------SLNSDEPNQNSN-QSPISPPTPNLPVTPPPSVLHLS 82

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQ
Sbjct: 83  FNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQ 142

Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           YP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIET
Sbjct: 143 YPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIET 202

Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL 272
           IANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG L
Sbjct: 203 IANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHL 262

Query: 273 LATSSTKGTLVRIFNTLDGTLLQE--------VRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           LAT+S+KGTLVR+FNT+DGTL QE        VRRGADRAEIYSLAFSSNAQWLAVSSDK
Sbjct: 263 LATASSKGTLVRVFNTVDGTLRQESHRDVTLQVRRGADRAEIYSLAFSSNAQWLAVSSDK 322

Query: 325 GTVHVFNLKVNSGS-ARSEPRSTSDPTLPTSSLSFIK-GVLPKYFSSEWSVAQFRLVEGS 382
           GTVHVF LKVNSGS  +   R   D T  + S S     VLPKYFSSEWSVAQFRLVEG+
Sbjct: 323 GTVHVFGLKVNSGSQVKDSSRIAPDATPSSPSSSLSLFKVLPKYFSSEWSVAQFRLVEGT 382

Query: 383 PYIVAFGHQKNTVVILGMDG 402
            YI AFGHQKNTVVILGMDG
Sbjct: 383 QYIAAFGHQKNTVVILGMDG 402

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7362757|emb|CAB83127.1| putative protein [Arabidopsis thaliana]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 301/419 (71%), Positives = 331/419 (78%), Gaps = 34/419 (8%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQEV--------RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPR 344
            QE         + GADRAEIYSLAFSSNAQWLAVSSDKGTVHVF LKVNSGS  +   R
Sbjct: 284 RQESGTSEDEIGKEGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGSQVKDSSR 343

Query: 345 STSDPTLPTSSLSFIK-GVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402
              D T  + S S     VLP+YFSSEWSVAQFRLVEG+ YI AFGHQKNTVVILGMDG
Sbjct: 344 IAPDATPSSPSSSLSLFKVLPRYFSSEWSVAQFRLVEGTQYIAAFGHQKNTVVILGMDG 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775635|emb|CAN67189.1| hypothetical protein VITISV_032850 [Vitis vinifera]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 302/418 (72%), Positives = 329/418 (78%), Gaps = 36/418 (8%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSD 348
           DGT LQEVRRGADRAE           WLAVSSDKGTVHVF LKVNSGS    +    SD
Sbjct: 292 DGTRLQEVRRGADRAE-----------WLAVSSDKGTVHVFGLKVNSGSLGNDKSHGASD 340

Query: 349 PTLPTS----SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402
             L  +    SLSFIKGVLPKYFSSEWSVAQFRL EGS YIVAFGHQKNTVVILGMDG
Sbjct: 341 ANLAVASSGLSLSFIKGVLPKYFSSEWSVAQFRLHEGSQYIVAFGHQKNTVVILGMDG 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450815|ref|XP_002283982.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like isoform 1 [Vitis vinifera]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 286/351 (81%), Positives = 308/351 (87%), Gaps = 12/351 (3%)

Query: 62  IPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR 121
           +PES  N    +P P+   +  P PTLLH+SFNQDHGCF+AGTDHGFRIYNCDPFREIFR
Sbjct: 47  LPESEYN-DDSVP-PSADPTRFPAPTLLHLSFNQDHGCFSAGTDHGFRIYNCDPFREIFR 104

Query: 122 RDF-----ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS 176
           RDF       G GIGVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ+RCIGELSFRS
Sbjct: 105 RDFCGDDGGSGTGIGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQTRCIGELSFRS 164

Query: 177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236
           EV+SV+LRRDRI+ +L QKIFVYNFADLKLLHQIETIANPKGLC VSQ  GS+VLVCPGL
Sbjct: 165 EVKSVRLRRDRIVAILLQKIFVYNFADLKLLHQIETIANPKGLCEVSQLSGSMVLVCPGL 224

Query: 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
            KGQVRVEHY SKRTKFIMAHDSRIACFALTQDG+LLATSS+KGTLVRIFNTLDGTLLQE
Sbjct: 225 LKGQVRVEHYNSKRTKFIMAHDSRIACFALTQDGRLLATSSSKGTLVRIFNTLDGTLLQE 284

Query: 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE-PRSTSDPTL---- 351
           VRRGADRAEIYS+AFSS+AQWLAVSSDKGTVHVF+LKV SGS  S+  RS+S+P L    
Sbjct: 285 VRRGADRAEIYSVAFSSSAQWLAVSSDKGTVHVFSLKVESGSLGSDRSRSSSEPNLSVPS 344

Query: 352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402
             SSLSF+KGVLP+YFSSEWSVAQFRL EGS YIVAFGHQKNTVVILGMDG
Sbjct: 345 AVSSLSFMKGVLPRYFSSEWSVAQFRLHEGSQYIVAFGHQKNTVVILGMDG 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436529|ref|XP_004136045.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus] gi|449533312|ref|XP_004173620.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/406 (71%), Positives = 314/406 (77%), Gaps = 20/406 (4%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSP 60
           M  LSA+ SP        +      +            D   S E F           S 
Sbjct: 1   METLSAFPSPPWPNPNPNSNPSPNPNPNPNPNPPSAVADS-SSSERFD----------SD 49

Query: 61  SIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF 120
           S+   +P    P   P  S      P+LLH+SFNQDHGCFAAGTD GFRIYNCDPFREIF
Sbjct: 50  SVSSVDPTGLSPAVEPPASQ-----PSLLHLSFNQDHGCFAAGTDRGFRIYNCDPFREIF 104

Query: 121 RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS 180
           RRDF+RGGG+GVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQSRCIGELSFRS VR 
Sbjct: 105 RRDFDRGGGVGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQSRCIGELSFRSAVRG 164

Query: 181 VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240
           V+L+RDRIIV+LEQK+FVYNFADLKLLHQIETIANPKGLCAVSQ   SLVLVCPGLQKGQ
Sbjct: 165 VRLQRDRIIVILEQKVFVYNFADLKLLHQIETIANPKGLCAVSQLSTSLVLVCPGLQKGQ 224

Query: 241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300
           VRVEHYAS+RTKFIMAHDSRIACFALT +GQLLAT+STKGTLVRIFNT DG LLQEVRRG
Sbjct: 225 VRVEHYASRRTKFIMAHDSRIACFALTTNGQLLATASTKGTLVRIFNTFDGNLLQEVRRG 284

Query: 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT----SSL 356
           ADRAEIYSLAFSS AQWLAVSSDKGTVHVF+LKVNSGS  ++    +D +L      SS 
Sbjct: 285 ADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSGSLGNDMSHQNDSSLSVAPSGSSF 344

Query: 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402
           SFIKGVLPKYF SEWSVAQFRL EGS Y+VAFGHQKNTVVILGMDG
Sbjct: 345 SFIKGVLPKYFKSEWSVAQFRLHEGSQYVVAFGHQKNTVVILGMDG 390

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132364|ref|XP_002321321.1| predicted protein [Populus trichocarpa] gi|222862094|gb|EEE99636.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/324 (86%), Positives = 291/324 (89%), Gaps = 9/324 (2%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG----VVEMLFRCNILA 143
           LLH+SFNQD GCFAAGTDHGFRIYNCDPFREIFRRDF+  G  G     VEMLFRCN+LA
Sbjct: 1   LLHVSFNQDSGCFAAGTDHGFRIYNCDPFREIFRRDFDGSGNSGGGIGAVEMLFRCNVLA 60

Query: 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD 203
           LVGGGPDPQYP NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD
Sbjct: 61  LVGGGPDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD 120

Query: 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIAC 263
           LKLLHQIETIANPKGLCAVS G GSLVLVCPGLQKGQVRVEHYASKRTKFIM HDSR AC
Sbjct: 121 LKLLHQIETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMVHDSRTAC 180

Query: 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323
           FALTQDGQLLAT+STKGTLVRIFNT DGTLLQEVRRGADRAE+YSLAFSS AQWLAVSSD
Sbjct: 181 FALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEVYSLAFSSTAQWLAVSSD 240

Query: 324 KGTVHVFNLKVNSGS-ARSEPRSTSDPTL----PTSSLSFIKGVLPKYFSSEWSVAQFRL 378
           KGTVHVF+LK+N GS      +ST++P L    P SSLSF KGVLPKYFSSEWSVAQF L
Sbjct: 241 KGTVHVFSLKINPGSPVIDRSQSTNEPNLALTSPASSLSFFKGVLPKYFSSEWSVAQFHL 300

Query: 379 VEGSPYIVAFGHQKNTVVILGMDG 402
           VEGS YIVAFGHQKNTVVILG+DG
Sbjct: 301 VEGSQYIVAFGHQKNTVVILGLDG 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2081705	425	AtATG18a "autophagy 18a" [Arab	0.895	0.849	0.754	1.9e-145
UNIPROTKB|Q8LR61	457	P0423A12.30 "Putative WD repea	0.776	0.684	0.747	4.8e-126
UNIPROTKB|Q5VQF8	417	OJ1276_B06.19 "Putative unchar	0.627	0.606	0.675	3.5e-107
TAIR|locus:2058450	393	ATG18C "AT2G40810" [Arabidopsi	0.602	0.618	0.692	2.2e-105
TAIR|locus:2102614	391	ATG18D "homolog of yeast autop	0.769	0.792	0.612	9.5e-105
UNIPROTKB|Q0DKE9	382	Os05g0169200 "Os05g0169200 pro	0.605	0.638	0.540	2.7e-86
DICTYBASE|DDB_G0282581	350	wdr45l "WD repeat domain phosp	0.754	0.868	0.519	3.9e-83
UNIPROTKB|Q22UW9	351	TTHERM_00577340 "WD repeat dom	0.766	0.880	0.466	5.1e-74
TAIR|locus:2156779	374	G18E "AT5G05150" [Arabidopsis	0.739	0.796	0.490	1.2e-72
UNIPROTKB|Q640T2	344	wdr45b "WD repeat domain phosp	0.739	0.866	0.458	4.9e-69

TAIR|locus:2081705 AtATG18a "autophagy 18a" [Arabidopsis thaliana (taxid:3702)]

 Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
 Identities = 283/375 (75%), Positives = 304/375 (81%)

Query:    33 SSEDQTDQLQSLESFSSMP--QDEPDSFSPSIPESNPNYQMXXXXXXXXXXXXXXXXXXH 90
             S  D+ D+  SL+SFSSM    DEP+  S   P S P   +                  H
Sbjct:    30 SHRDRVDEPDSLDSFSSMSLNSDEPNQTSNQSPLSPPTPNLPVMPPPSVL---------H 80

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +SFNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPD
Sbjct:    81 LSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPD 140

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
             PQYP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQI
Sbjct:   141 PQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQI 200

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ETIANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG
Sbjct:   201 ETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDG 260

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+S+KGTLVRIFNT+DGTL QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF
Sbjct:   261 HLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 320

Query:   331 NLKVNSGS-ARSEPRXX--XXXXXXXXXXXFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387
              LKVNSGS  +   R                 KGVLP+YFSSEWSVAQFRLVEG+ YI A
Sbjct:   321 GLKVNSGSQVKDSSRIAPDATPSSPSSSLSLFKGVLPRYFSSEWSVAQFRLVEGTQYIAA 380

Query:   388 FGHQKNTVVILGMDG 402
             FGHQKNTVVILGMDG
Sbjct:   381 FGHQKNTVVILGMDG 395

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031090 "organelle membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006914 "autophagy" evidence=RCA;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042594 "response to starvation" evidence=IEP;IMP

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0048102 "autophagic cell death" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

UNIPROTKB|Q8LR61 P0423A12.30 "Putative WD repeat domain 45" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
 Identities = 243/325 (74%), Positives = 266/325 (81%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---------GGGIGVVEMLFRCN 140
             HISFNQD+GCFAAGT  GFRIYNCDPFREIFRRD            GGGIGVVEMLFRCN
Sbjct:   101 HISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLFRCN 160

Query:   141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYN 200
             ILALVGGG  P YP NKVMIWDDHQSRCIGELSFRS VR V+LRRDRIIVVLE KIFVYN
Sbjct:   161 ILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFVYN 220

Query:   201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR 260
             FADLKL+HQIET  NPKGLCAVSQ  GS+VLVCPG QKGQVRVEHY +++TKFI AH SR
Sbjct:   221 FADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAHTSR 280

Query:   261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320
             +ACFAL+QDG+L+AT+STKGTLVRI+N  +G LLQEVRRGADRAEIYSLAFS+N Q+LAV
Sbjct:   281 VACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNLQYLAV 340

Query:   321 SSDKGTVHVFNLKVNSGSARSE---PRXXXXXXXXXXXXXFIKGVLPKYFSSEWSVAQFR 377
             SSDKGT+HVFNLK+N G   ++   P              FIKGVLPKYF SEWSVAQFR
Sbjct:   341 SSDKGTIHVFNLKINVGLTTNDKPLPAPDPDVPHISPSLSFIKGVLPKYFHSEWSVAQFR 400

Query:   378 LVEGSPYIVAFGHQKNTVVILGMDG 402
             L EG  YIVAFGH+KNTV ++GMDG
Sbjct:   401 LHEGEQYIVAFGHEKNTVAVVGMDG 425

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5VQF8 OJ1276_B06.19 "Putative uncharacterized protein OJ1276_B06.19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 922 (329.6 bits), Expect = 3.5e-107, Sum P(2) = 3.5e-107
 Identities = 173/256 (67%), Positives = 209/256 (81%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD GCFAAGT +GFRI+NCDPF+E FRRD  + GG G+VEMLFRCNILALVGGG +
Sbjct:    50 VSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDL-KSGGFGIVEMLFRCNILALVGGGSN 108

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
               YP NKVMIWDDH+S CIGE +FRS+VR+VKL +D I++VLE+KI+VYNF DLKLLHQI
Sbjct:   109 AHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQI 168

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET +NPKGLC +S    + VL CPG+ +G VRVEH+  K T+ I AHDS I+C ALT DG
Sbjct:   169 ETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDG 228

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+S KGTL+RIFNT+DGT LQEVRRG D+A+IYS+A S N QWLAVSSDKGTVH+F
Sbjct:   229 LLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIF 288

Query:   331 NLKVN-SGS-ARSEPR 344
             +L+V  +G  A +E R
Sbjct:   289 SLRVRVAGEDASNEQR 304

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2058450 ATG18C "AT2G40810" [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
 Identities = 169/244 (69%), Positives = 201/244 (82%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             + +NQD  CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    35 VCWNQDSSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 93

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP +KV+IWDDHQSRCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    94 SQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 153

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET ANP+GLC +S    + VL CPGL +G++RVEH+     + I AHDS IAC  LT DG
Sbjct:   154 ETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDG 213

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+STKGTL+RIFNT+DGT LQEVRRG DRA+IYS+A S N QWLAVSSDKGTVH+F
Sbjct:   214 LLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIF 273

Query:   331 NLKV 334
             +L+V
Sbjct:   274 SLRV 277

GO:0003674 "molecular_function" evidence=ND

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2102614 ATG18D "homolog of yeast autophagy 18 (ATG18) D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 199/325 (61%), Positives = 245/325 (75%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    39 VSWNQDYSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 97

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP NKV+IWDDHQ RCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    98 SQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 157

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             E +ANP+GLC +S  + + VL CPG+++G+VRVEH+     + I AHDS IAC  LT DG
Sbjct:   158 ENMANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFGLNMVQIINAHDSNIACMTLTLDG 217

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+STKGTL+RIFNT+DGT LQEVRRG DRA+IYS+A S N QWLAVSSDKGTVH+F
Sbjct:   218 LLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIF 277

Query:   331 NLKV-----------NSGSARS-EPRXXXXXXXX-XXXXXFIKGVLPKYFSSEWSVAQFR 377
             +L+V           +  S+ S +P               F++GVLPKYFSSEWS +QF 
Sbjct:   278 SLRVRVIGEDAYSTEHETSSNSLQPLVSPASGANPGSSLSFLRGVLPKYFSSEWSFSQFH 337

Query:   378 LVEGSPYIVAFGHQKNTVVILGMDG 402
             + E + Y  AFG Q NT+ I+G+DG
Sbjct:   338 VPEVTQYFAAFGAQ-NTIAIIGLDG 361

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q0DKE9 Os05g0169200 "Os05g0169200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 726 (260.6 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
 Identities = 132/244 (54%), Positives = 174/244 (71%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CF A T +GFR+++C PF E  RR F   GGIG+ EMLFR +I  L G   +
Sbjct:    20 VSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAEMLFRTSIFGLAGAESN 79

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              ++P   + +WDD+  R I + +F SE+R+V+L +D  +VVLE+ I VY F DL+L +Q 
Sbjct:    80 TEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYRFKDLRLFYQA 139

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
              T++NP GLC +S    + V  CPG  KGQV +EH+  K T+FI AHDS ++C  +  DG
Sbjct:   140 RTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAAHDSPLSCMTMALDG 199

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+S +GTL+RIFNT DGT +QEVRRG DRAEIYS+A S N QWLAVSSDKGTVHVF
Sbjct:   200 TLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSIALSPNVQWLAVSSDKGTVHVF 259

Query:   331 NLKV 334
             +L+V
Sbjct:   260 SLRV 263

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

DICTYBASE|DDB_G0282581 wdr45l "WD repeat domain phosphoinositide-interacting protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 162/312 (51%), Positives = 223/312 (71%)

Query:    92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151
             +FNQD+ CFA GT+ GF I++CDPF+E F R F+  GG+G+VEMLFRCNILA+VGGG  P
Sbjct:    17 NFNQDYSCFACGTEKGFLIFSCDPFKERFGRVFD--GGVGIVEMLFRCNILAIVGGGKKP 74

Query:   152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIE 211
             +Y  N+VMIWDD+Q++CI +L F+SEV++VKLRRDRI+VVLE K+++YNF+DL+L+HQ+E
Sbjct:    75 RYTPNQVMIWDDYQNKCIAKLEFKSEVKAVKLRRDRIVVVLENKVYLYNFSDLQLVHQLE 134

Query:   212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ 271
             T  NPKG+CA+  G  + VL CPGL+ G V VE Y  K+T+ I AH+  ++  AL +DG 
Sbjct:   135 TTNNPKGICAICPGTVN-VLACPGLKPGYVHVELYDLKQTQIIPAHEGALSQIALNKDGT 193

Query:   272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331
             LLAT+S KGTL+RIF+T  G  ++E+RRG +RAEIYS+AF++++  L VSSDK T H+F+
Sbjct:   194 LLATASEKGTLIRIFDTATGEKVKELRRGTNRAEIYSIAFNNDSTALCVSSDKNTGHIFD 253

Query:   332 LKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLP-KYFSSEWSVAQFRLVEGSPYIVAFGH 390
             L +   S + E               F+  +LP  YF SEWS  QF++ E S  I AFG 
Sbjct:   254 LSMAKPSPKEED---TQQKNRQSTFSFMGDILPTNYFKSEWSAVQFQIPE-SRSICAFGS 309

Query:   391 QKNTVVILGMDG 402
               N++ ++   G
Sbjct:   310 TPNSINVICASG 321

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q22UW9 TTHERM_00577340 "WD repeat domain phosphoinositide-interacting protein 3" [Tetrahymena thermophila SB210 (taxid:312017)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 148/317 (46%), Positives = 206/317 (64%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             ++SFNQD+GCF+ GT+ GF IYN +PF++I+ R    GGGIG+VEML+RCNI+ALVGGG 
Sbjct:     9 YLSFNQDYGCFSCGTEDGFNIYNTEPFKQIYSRSV--GGGIGIVEMLYRCNIIALVGGGK 66

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQ 209
              P++P  KV +WDD Q + I E++FRSEV++VKL+ DR+IVVLE +I+V+NFADLKL+  
Sbjct:    67 SPKFPPTKVQLWDDSQLKRIAEMNFRSEVKAVKLKADRVIVVLETRIYVHNFADLKLIDT 126

Query:   210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD 269
             I+T  NP GLC+V+     ++L  P  + G+V V  Y+  +T  I AH S + C      
Sbjct:   127 IDTCPNPLGLCSVNTEGDEIILATPHKEVGEVNVHLYSDNKTISIRAHQSALNCLQTNPR 186

Query:   270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329
             G  LAT+S KGT++RI+NT  G LLQE+RRG++ A+IYS+AF     ++A SSD GT+H+
Sbjct:   187 GTKLATASQKGTIIRIYNTKKGELLQELRRGSEYAQIYSIAFHPKGTFVACSSDSGTIHI 246

Query:   330 FNLK----VNSGSARSEPRXXXXXXXXXXXXXFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385
             F LK    +                       F+K ++P YF SEWS AQ R +  +   
Sbjct:   247 FALKQTEDLEPQGNNGNSSNGGTKSNPKSALKFLKFIVP-YFDSEWSFAQCR-INDTKAK 304

Query:   386 VAFGHQKNTVVILGMDG 402
             VAFG   NT+V +  +G
Sbjct:   305 VAFGPDDNTIVAVTYEG 321

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2156779 G18E "AT5G05150" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 155/316 (49%), Positives = 207/316 (65%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGG 148
             +++NQ    F  GT+HGF +Y+C P   + I R   E   G  V EMLF  N+ A VG G
Sbjct:    36 VAWNQVCSGFIVGTNHGFNVYSCKPMIKKSISRAPHE--SGFKVAEMLFLSNLFAFVGNG 93

Query:   149 -PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLL 207
               + +YP NKV +WDD+++ C+ EL+F+SEV +VKL R+ ++VVL+Q I+VY F +LK+ 
Sbjct:    94 YNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVLKQNIYVYTFNNLKVD 153

Query:   208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT 267
               IET+ NPKGLC V+      VL CPG   GQV+V        KFI AHDS IAC  LT
Sbjct:   154 RVIETLMNPKGLCCVTHVESKAVLACPGFHPGQVQVHDLRWNVIKFIKAHDSAIACMTLT 213

Query:   268 QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327
              DG LLAT+STKGTL+RIFN +DGTLLQE RRG +RAEIY++A SSN +W+A SS+KGT+
Sbjct:   214 LDGSLLATASTKGTLIRIFNAVDGTLLQEFRRGVERAEIYNVAISSNLKWVAASSEKGTL 273

Query:   328 HVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLPKY-FSSEWSVAQFRLVEGSPYIV 386
             HVF L+ +  S   +P              FI+ +LPKY + +E S AQF L   + +IV
Sbjct:   274 HVFRLRPDILSF--DP---------ASSSSFIRVILPKYLYENERSFAQFSLPASTKFIV 322

Query:   387 AFGHQKNTVVILGMDG 402
              FG + NTV+++G+DG
Sbjct:   323 GFGSE-NTVLLVGIDG 337

GO:0006914 "autophagy" evidence=IBA

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|Q640T2 wdr45b "WD repeat domain phosphoinositide-interacting protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 145/316 (45%), Positives = 198/316 (62%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             +  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGGG 
Sbjct:    15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGGGK 73

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLH 208
              P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   LH
Sbjct:    74 KPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLH 133

Query:   209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFAL 266
               ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C AL
Sbjct:   134 VFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIAL 193

Query:   267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326
                G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD GT
Sbjct:   194 NLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHGT 253

Query:   327 VHVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386
             VH+F        A  +P+                  LPKYFSS+WS ++F++  GSP + 
Sbjct:   254 VHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPCVC 299

Query:   387 AFGHQKNTVVILGMDG 402
             AFG + N+V+ +  DG
Sbjct:   300 AFGTEPNSVIAICADG 315

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023544001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (439 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 49/249 (19%), Positives = 100/249 (40%), Gaps = 20/249 (8%)

Query: 91  ISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
           ++F+ D         D   ++++ +    +      +G    V ++    +   L  G  
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTL---KGHTGPVRDVAASADGTYLASGSS 71

Query: 150 DPQYPLNKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK 205
           D       + +WD     C+  L    S V SV    D  I+     ++ I V++    K
Sbjct: 72  D-----KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126

Query: 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACF 264
            L  +    +   + +V+       +     Q G +++ +    K    +  H   +   
Sbjct: 127 CLTTLRGHTDW--VNSVAFSPDGTFVAS-SSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           A + DG+ L +SS+ GT +++++   G  L  +R       + S+AFS +   LA  S+ 
Sbjct: 184 AFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGYLLASGSED 240

Query: 325 GTVHVFNLK 333
           GT+ V++L+
Sbjct: 241 GTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 18/194 (9%)

Query: 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE-VRSVKLRRDRIIVV---LEQKIFVY 199
           L     D       + +WD    +C+  L   ++ V SV    D   V     +  I ++
Sbjct: 108 LSSSSRD-----KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 200 NFADLKLLHQIETIANPKGLCAVSQ-GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
           +    K +  +    +   + +V+    G  +L       G +++ +    K    +  H
Sbjct: 163 DLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLRGH 218

Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317
           ++ +   A + DG LLA+ S  GT +R+++   G  +Q +        + SLA+S + + 
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKR 275

Query: 318 LAVSSDKGTVHVFN 331
           LA  S  GT+ +++
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 47/239 (19%), Positives = 93/239 (38%), Gaps = 24/239 (10%)

Query: 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSF--RSEVRSVKLR--- 184
            +  + F  +   L+ G  D       + +WD       I  L     S V  + L    
Sbjct: 67  SITSIAFSPDGELLLSGSSD-----GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD 121

Query: 185 RDRIIVVLE---QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240
            + I++        + +++ +   KL+  +E  +      A S      +L       G 
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGT 179

Query: 241 VRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299
           +++ +    K    +  H   ++  A + DG LL  S +    +R+++   G LL+    
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358
           G   + + S  FS +   LA  S  GT+ +++L+    S+ S  R+ S  +    S++F
Sbjct: 240 GHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLR----SSSSLLRTLSGHSSSVLSVAF 292

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.5 bits (119), Expect = 8e-07
 Identities = 56/262 (21%), Positives = 110/262 (41%), Gaps = 18/262 (6%)

Query: 79  STSSSPPPTLLHISFNQDHGCFAA--GTDHGFRIYNCDPFREIFRRDFERGGGIGVVEML 136
           ST +     +  ++F+ D G   A   +D   R+++    + +        G    V   
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSVVSS 248

Query: 137 FRCNILALVGGGPDPQYPLNKVMIWD-DHQSRCIGELSFRSE-VRSVKLRRDRIIVV--- 191
           F  +   L  G  D       + +WD    S  +  LS  S  V SV    D  ++    
Sbjct: 249 FSPDGSLLASGSSD-----GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251
            +  + +++    KLL  +    +   + ++S      +LV  G   G +R+    + + 
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
              +   S +   + + DG+++++ ST GT VR+++   G+LL+ +     R  + SL F
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGT-VRLWDLSTGSLLRNLDGHTSR--VTSLDF 420

Query: 312 SSNAQWLAVSSDKGTVHVFNLK 333
           S + + LA  S   T+ +++LK
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 70/395 (17%), Positives = 141/395 (35%), Gaps = 24/395 (6%)

Query: 21  NPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAEST 80
             + +S +S   S   +  +L    +  S+           +     +  + LP  +   
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL 60

Query: 81  SSSPPPTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFR 138
                 ++  I+F+ D     +  +D   ++++ D   ++ +  +      +  + +   
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 139 C-NILALVGGGPDPQYPLNKVMIWD-DHQSRCIGELSF-RSEVRSVKLRRDRIIVVLE-- 193
             N + L     D       V +WD     + I  L      V S+    D  ++     
Sbjct: 121 DGNSILLASSSLD-----GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175

Query: 194 --QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-- 249
               I +++    K L  +                G L++       G +R+   ++   
Sbjct: 176 LDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGS-SDGTIRLWDLSTGKL 233

Query: 250 -RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
            R+      DS ++ F  + DG LLA+ S+ GT +R+++    + L     G     + S
Sbjct: 234 LRSTLSGHSDSVVSSF--SPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSGHSS-SVLS 289

Query: 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS 368
           +AFS + + LA  S  GTV +++L+       S      +  + + S S    +L    S
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 369 SEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403
            + ++  + L  G P     GH     V    DGR
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR 383

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313
           +  H   + C A + DG+LLAT S  GT +++++   G LL+          +  +A S+
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLR--TLKGHTGPVRDVAASA 61

Query: 314 NAQWLAVSSDKGTVHVFNLK 333
           +  +LA  S   T+ +++L+
Sbjct: 62  DGTYLASGSSDKTIRLWDLE 81

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 31/188 (16%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 156 NKVMIWDDHQSRCIGELSF---RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE 211
             + +WD    + +         S V S       +     +  I +++      L +  
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT- 279

Query: 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV---EHYASKRTKFIMAHDSRIACFALTQ 268
              +   + +V+      +L   G   G VR+   E      +  +  H+  ++  + + 
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338

Query: 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328
           DG LL +  +    +R+++   G  L+ +   ++   + S++FS + + ++  S  GTV 
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN---VLSVSFSPDGRVVSSGSTDGTVR 395

Query: 329 VFNLKVNS 336
           +++L   S
Sbjct: 396 LWDLSTGS 403

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
PTZ00420	568	coronin; Provisional	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
PRK04922	433	tolB translocation protein TolB; Provisional	99.74
PRK05137	435	tolB translocation protein TolB; Provisional	99.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
PRK02889	427	tolB translocation protein TolB; Provisional	99.69
COG2319	466	FOG: WD40 repeat [General function prediction only	99.68
KOG1188	376	consensus WD40 repeat protein [General function pr	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.67
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG2321	703	consensus WD40 repeat protein [General function pr	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
KOG0649	325	consensus WD40 repeat protein [General function pr	99.66
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.66
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.65
KOG2315	566	consensus Predicted translation initiation factor	99.65
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.64
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.63
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
PRK00178	430	tolB translocation protein TolB; Provisional	99.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.62
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.61
KOG1310	758	consensus WD40 repeat protein [General function pr	99.61
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.61
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.6
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.59
KOG2139	445	consensus WD40 repeat protein [General function pr	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.57
PRK00178	430	tolB translocation protein TolB; Provisional	99.55
PRK04792	448	tolB translocation protein TolB; Provisional	99.54
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.54
KOG1334	559	consensus WD40 repeat protein [General function pr	99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.54
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.54
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.54
PRK04792	448	tolB translocation protein TolB; Provisional	99.54
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.53
PRK01029	428	tolB translocation protein TolB; Provisional	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.5
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.5
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.48
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.47
KOG2314	698	consensus Translation initiation factor 3, subunit	99.46
KOG4227	609	consensus WD40 repeat protein [General function pr	99.46
PRK01029	428	tolB translocation protein TolB; Provisional	99.46
KOG2315	566	consensus Predicted translation initiation factor	99.46
PRK04043	419	tolB translocation protein TolB; Provisional	99.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.43
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.38
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.37
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.31
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.31
KOG4547	541	consensus WD40 repeat-containing protein [General	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.3
KOG2314	698	consensus Translation initiation factor 3, subunit	99.29
COG4946	668	Uncharacterized protein related to the periplasmic	99.28
KOG1310	758	consensus WD40 repeat protein [General function pr	99.28
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.27
PRK04043	419	tolB translocation protein TolB; Provisional	99.27
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.25
KOG2321	703	consensus WD40 repeat protein [General function pr	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.19
KOG1334	559	consensus WD40 repeat protein [General function pr	99.17
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.16
COG4946	668	Uncharacterized protein related to the periplasmic	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.16
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.14
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.14
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.12
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.1
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.09
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.06
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.05
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.04
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.03
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.0
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.99
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.96
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.95
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.94
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.94
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.86
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.84
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.8
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.79
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.75
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.74
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.72
KOG2695	425	consensus WD40 repeat protein [General function pr	98.7
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.7
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.7
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.7
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.7
PRK02888	635	nitrous-oxide reductase; Validated	98.7
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.69
KOG2695	425	consensus WD40 repeat protein [General function pr	98.68
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.65
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.63
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.63
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.62
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.61
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.56
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.55
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.48
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.48
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.48
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.45
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.4
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.39
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.38
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.38
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.36
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.35
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.32
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.3
COG3391	381	Uncharacterized conserved protein [Function unknow	98.25
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.21
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.21
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.19
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.17
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.16
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.12
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.11
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.11
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.09
PRK02888	635	nitrous-oxide reductase; Validated	98.09
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.08
KOG3621	726	consensus WD40 repeat-containing protein [General	98.06
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.05
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.04
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.04
COG3391	381	Uncharacterized conserved protein [Function unknow	98.02
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.01
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.98
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.95
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.87
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.79
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.79
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.78
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.76
KOG3621	726	consensus WD40 repeat-containing protein [General	97.74
PRK13616	591	lipoprotein LpqB; Provisional	97.71
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.69
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.62
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.6
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.58
KOG2395	644	consensus Protein involved in vacuole import and d	97.55
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.53
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.5
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.48
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.47
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.44
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.39
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.38
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.32
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.31
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.28
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.27
PRK13616	591	lipoprotein LpqB; Provisional	97.26
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.25
KOG2395	644	consensus Protein involved in vacuole import and d	97.23
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.17
PRK10115	686	protease 2; Provisional	97.16
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.14
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.11
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.06
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.92
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.88
PHA02713	557	hypothetical protein; Provisional	96.86
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.81
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.78
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.71
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.65
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.64
PRK10115	686	protease 2; Provisional	96.49
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.39
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.14
KOG2444	238	consensus WD40 repeat protein [General function pr	96.1
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.96
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.86
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.81
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.8
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.8
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.78
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.78
COG5167	776	VID27 Protein involved in vacuole import and degra	95.66
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.51
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.49
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.19
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.09
KOG2444	238	consensus WD40 repeat protein [General function pr	95.08
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.03
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.95
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.95
COG5276	370	Uncharacterized conserved protein [Function unknow	94.93
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.87
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.82
PHA02713	557	hypothetical protein; Provisional	94.76
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.73
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.67
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.53
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.42
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.26
COG5167	776	VID27 Protein involved in vacuole import and degra	94.17
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.06
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.83
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.68
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	93.43
COG5276	370	Uncharacterized conserved protein [Function unknow	93.42
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.36
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.08
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.9
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.81
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.26
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.19
PHA03098	534	kelch-like protein; Provisional	91.69
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.36
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.3
KOG2247	615	consensus WD40 repeat-containing protein [General	91.23
COG4880	603	Secreted protein containing C-terminal beta-propel	91.22
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.14
PHA03098	534	kelch-like protein; Provisional	91.05
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.97
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.61
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.37
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.35
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.32
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	90.01
COG4590	733	ABC-type uncharacterized transport system, permeas	89.23
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.12
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	88.99
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	88.89
PHA02790	480	Kelch-like protein; Provisional	87.45
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.44
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.3
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.08
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.81
KOG0783	1267	consensus Uncharacterized conserved protein, conta	86.7
COG4590	733	ABC-type uncharacterized transport system, permeas	86.57
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.55
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.23
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.98
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	85.96
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.79
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.78
PHA02790	480	Kelch-like protein; Provisional	85.75
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.37
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	85.37
COG1770	682	PtrB Protease II [Amino acid transport and metabol	85.36
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.17
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	84.99
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	84.9
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.6
KOG2247	615	consensus WD40 repeat-containing protein [General	84.59
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.59
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	84.56
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.56
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.48
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.3
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	84.11
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.64
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	83.3
PF14727	418	PHTB1_N: PTHB1 N-terminus	82.8
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	81.98
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.73
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	80.84
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	80.4

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-45  Score=303.58  Aligned_cols=274  Identities=15%  Similarity=0.254  Sum_probs=238.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|.+.|.|++|+|+|+.|++|+ |.++|+||+.+....  .++. +|...|.+++|+||+..+++++.+     |+
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--~t~K-gH~~WVlcvawsPDgk~iASG~~d-----g~  180 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--FTCK-GHKNWVLCVAWSPDGKKIASGSKD-----GS  180 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--eeec-CCccEEEEEEECCCcchhhccccC-----Ce
Confidence            56789999999999999999999998 666999999988776  6676 899999999999999999999999     99


Q ss_pred             EEEEECCCCceeE-EEe-cCCceeEEEEec-----CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          158 VMIWDDHQSRCIG-ELS-FRSEVRSVKLRR-----DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       158 i~iwd~~~~~~~~-~~~-~~~~i~~~~~~~-----~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      |++||.++|+++. .+. |...|++++|.|     ..++++   -||.|+|||+..+.++..+.+|..++++++|--++ 
T Consensus       181 I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-  259 (480)
T KOG0271|consen  181 IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-  259 (480)
T ss_pred             EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-
Confidence            9999999997664 566 999999999976     466777   39999999999999999999999999888775433 


Q ss_pred             eEEEEeeCCccCeEEEEEccCCc---------------------------------------------------------
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKR---------------------------------------------------------  250 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~---------------------------------------------------------  250 (403)
                        ++ ++|+.|++|++|+...+.                                                         
T Consensus       260 --li-ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  260 --LI-YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             --eE-EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence              23 347799999999864311                                                         


Q ss_pred             -----------------------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          251 -----------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       251 -----------------------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                                             +..+.+|..-|..+.||||++++|+++.|.. |++||.++|+.+.+|++  |-..|+
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~VY  413 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAVY  413 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--ccceeE
Confidence                                   0123567888999999999999999999999 99999999999999997  679999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (403)
                      .++|+.|.++|++|+.|.++++|++++.+..                                   ..+.+|.+.|.++.
T Consensus       414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~-----------------------------------~DLpGh~DEVf~vD  458 (480)
T KOG0271|consen  414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLK-----------------------------------QDLPGHADEVFAVD  458 (480)
T ss_pred             EEEeccCccEEEEcCCCceEEEEEeeeeeec-----------------------------------ccCCCCCceEEEEE
Confidence            9999999999999999999999999998842                                   22567788999999


Q ss_pred             eccCCCEEEEEccCC
Q 015650          388 FGHQKNTVVILGMDG  402 (403)
Q Consensus       388 fs~d~~~l~~~~~dG  402 (403)
                      |+|||+.+++|+.|.
T Consensus       459 wspDG~rV~sggkdk  473 (480)
T KOG0271|consen  459 WSPDGQRVASGGKDK  473 (480)
T ss_pred             ecCCCceeecCCCce
Confidence            999999999999884

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-43  Score=293.93  Aligned_cols=274  Identities=16%  Similarity=0.203  Sum_probs=249.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC--eEEEeeCCCCCCCCCce
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLNK  157 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~~  157 (403)
                      ..+-+.+|..+.|+.|++.|++|+ ++.++||+......+  ..|. +|...+.++.|+|.  ...+++++.|     |+
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~-gH~~~v~~~~fhP~~~~~~lat~s~D-----gt  242 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLR-GHTSRVGAAVFHPVDSDLNLATASAD-----GT  242 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEe-ccccceeeEEEccCCCccceeeeccC-----Cc
Confidence            345677899999999999999999 666999998877444  7787 89999999999997  6789999999     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      +++|++.+..++..+. |...|..++|+|+|++++   .|.+-++||++++..+...++|...+..++|.++|.   +++
T Consensus       243 vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS---L~~  319 (459)
T KOG0272|consen  243 VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS---LAA  319 (459)
T ss_pred             eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc---eee
Confidence            9999999999999999 999999999999999999   599999999999998888899999999999999997   555


Q ss_pred             eCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                      +|+.|..-+|||++++. +..+.+|..+|.+++|+|+|..||+|+.|++ ++|||++..+.+.++..  |.+-|+.+.|+
T Consensus       320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS~Vk~~  396 (459)
T KOG0272|consen  320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVSQVKYS  396 (459)
T ss_pred             ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhhheEec
Confidence            67799999999999954 6678899999999999999999999999999 99999999999888886  78999999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccC
Q 015650          313 S-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (403)
Q Consensus       313 ~-d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d  391 (403)
                      | .|.+|++++.|++++||.-.+..+                                   +..+.+|++.|.+|..++|
T Consensus       397 p~~g~fL~TasyD~t~kiWs~~~~~~-----------------------------------~ksLaGHe~kV~s~Dis~d  441 (459)
T KOG0272|consen  397 PQEGYFLVTASYDNTVKIWSTRTWSP-----------------------------------LKSLAGHEGKVISLDISPD  441 (459)
T ss_pred             ccCCeEEEEcccCcceeeecCCCccc-----------------------------------chhhcCCccceEEEEeccC
Confidence            8 778999999999999999998875                                   3447889999999999999


Q ss_pred             CCEEEEEccCCC
Q 015650          392 KNTVVILGMDGR  403 (403)
Q Consensus       392 ~~~l~~~~~dG~  403 (403)
                      ++++++++.|.|
T Consensus       442 ~~~i~t~s~DRT  453 (459)
T KOG0272|consen  442 SQAIATSSFDRT  453 (459)
T ss_pred             CceEEEeccCce
Confidence            999999999975

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=3.5e-39  Score=260.87  Aligned_cols=305  Identities=60%  Similarity=1.009  Sum_probs=275.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~  166 (403)
                      ...+++|+.|...+++|.+.|++||++++.++...+.+. .....++.|.|..+.++++.|+..|+|+++.|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~-~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI-DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccc-cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            345599999999999999999999999998776656665 3448899999999999999999999999999999998888


Q ss_pred             ceeEEEecCCceeEEEEecCceEEEecCeEEEEEcC-CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEE
Q 015650          167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (403)
Q Consensus       167 ~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d  245 (403)
                      +++.++.+..+|.++.+.++...++.++.|++|... +.+.++.++...++-..+++.+..+..++++.|..-|.|+|-|
T Consensus        86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD  165 (346)
T ss_pred             cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence            999999999999999999999999999999999998 5688888888888888999999999999999999999999999


Q ss_pred             ccCCce---eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650          246 YASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       246 ~~~~~~---~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      +.....   ..+.+|...|.|++++-+|.++|++|..|+.|||||..+|+++.+++.+.....|.+|+|||++.+|+++|
T Consensus       166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS  245 (346)
T KOG2111|consen  166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS  245 (346)
T ss_pred             hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence            988555   78999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       323 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      +.|+|+||.++.......           ..+++.+...++|+|+.+.|++.++++++++...++|..+.+.++..+.||
T Consensus       246 dKgTlHiF~l~~~~~~~~-----------~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dg  314 (346)
T KOG2111|consen  246 DKGTLHIFSLRDTENTED-----------ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADG  314 (346)
T ss_pred             CCCeEEEEEeecCCCCcc-----------ccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCC
Confidence            999999999998664222           115555556799999999999999999999999999999999999999999


Q ss_pred             C
Q 015650          403 R  403 (403)
Q Consensus       403 ~  403 (403)
                      +
T Consensus       315 s  315 (346)
T KOG2111|consen  315 S  315 (346)
T ss_pred             c
Confidence            6

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.9e-39  Score=256.43  Aligned_cols=279  Identities=15%  Similarity=0.136  Sum_probs=245.8

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      .+++.+|.+.|.++.|++|.++|++++.+ .+.|||.-+..+.....+   ....|..++|+|.+.++++++-|     +
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---~s~WVMtCA~sPSg~~VAcGGLd-----N  119 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---PSSWVMTCAYSPSGNFVACGGLD-----N  119 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---CceeEEEEEECCCCCeEEecCcC-----c
Confidence            48899999999999999999999999955 499999877666643333   67899999999999999999999     9


Q ss_pred             eEEEEECCCC------ceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          157 KVMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       157 ~i~iwd~~~~------~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      ...||++.+.      +..+++. |.+.+.++.|.+|+.++.  .|.+..+||+++++.+..|.+|.+.|..+.++|...
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence            9999999855      3344566 999999999999999988  588999999999999999999999999999999433


Q ss_pred             eEEEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccE
Q 015650          228 SLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (403)
                      +. +++ |+-|+..++||++.+ .++.+.+|+..|++++|.|+|.-+++|+.|++ .++||++..+.+..+.......+|
T Consensus       200 nt-FvS-g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gi  276 (343)
T KOG0286|consen  200 NT-FVS-GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGI  276 (343)
T ss_pred             Ce-EEe-cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCc
Confidence            33 343 558999999999984 56779999999999999999999999999999 999999999999888855455689


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEE
Q 015650          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (403)
                      ++++||..|++|++|..|.++.+||.-.++.                                   +..+.+|+.+|+++
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-----------------------------------vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-----------------------------------VGVLAGHENRVSCL  321 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccce-----------------------------------EEEeeccCCeeEEE
Confidence            9999999999999999999999999988874                                   44578999999999


Q ss_pred             EeccCCCEEEEEccCC
Q 015650          387 AFGHQKNTVVILGMDG  402 (403)
Q Consensus       387 ~fs~d~~~l~~~~~dG  402 (403)
                      ..+|||..|++|+.|.
T Consensus       322 ~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  322 GVSPDGMAVATGSWDS  337 (343)
T ss_pred             EECCCCcEEEecchhH
Confidence            9999999999999884

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-38  Score=251.55  Aligned_cols=289  Identities=13%  Similarity=0.161  Sum_probs=236.1

Q ss_pred             CCCccccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeE---EEEecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650           75 SPAESTSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (403)
Q Consensus        75 ~~~~~~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~  149 (403)
                      .....++.+|++.|+.++..+.+ ..|+.++ |..+.+|++......   ..+.+. +|...|..+..++++.+.++++.
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccc
Confidence            34457889999999999998875 5666666 556999998654332   357787 79999999999999999999999


Q ss_pred             CCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc--CCCceeEEEe
Q 015650          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI--ANPKGLCAVS  223 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~  223 (403)
                      |     +.+++||+.+++..+.|. |...|.+++|++|.+.++   -|.+|++|+... .+..++...  .+.|.+++|+
T Consensus        84 D-----~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   84 D-----GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             c-----ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEc
Confidence            9     999999999999999998 999999999999999988   499999999764 444444333  7889999999


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (403)
                      |.....+++.++ .|++|++||+++.++ ..+.+|.+.++.+++||||.++++|+.||. +.+||++.++.+..+.   +
T Consensus       158 P~~~~p~Ivs~s-~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a  232 (315)
T KOG0279|consen  158 PNESNPIIVSAS-WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---A  232 (315)
T ss_pred             CCCCCcEEEEcc-CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---C
Confidence            998777777644 999999999999655 457799999999999999999999999999 9999999999998888   6


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCC
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS  382 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (403)
                      ...|.+++|+|+.-+|+.+. +..|+|||++++..+..+.....             +            . ..+..+..
T Consensus       233 ~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~-------------g------------~-s~~~~~~~  285 (315)
T KOG0279|consen  233 FDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGI-------------G------------P-SSKAGDPI  285 (315)
T ss_pred             CCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccc-------------c------------c-ccccCCcE
Confidence            78999999999876666654 55699999999986554431100             0            0 01111223


Q ss_pred             ceEEEeccCCCEEEEEccCC
Q 015650          383 PYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       383 ~~~~~fs~d~~~l~~~~~dG  402 (403)
                      ...+||++||++|+.|-.||
T Consensus       286 clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  286 CLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             EEEEEEcCCCcEEEeeecCC
Confidence            45589999999999999887

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-39  Score=271.30  Aligned_cols=245  Identities=18%  Similarity=0.151  Sum_probs=222.7

Q ss_pred             CCCCCccccCCCCCCeEEEEEcCC--CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650           73 LPSPAESTSSSPPPTLLHISFNQD--HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (403)
Q Consensus        73 ~~~~~~~~~~~~~~~i~~i~~s~d--~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~  149 (403)
                      +......++.+|.+.|.++.|+|.  +..||+++ |+.+++|++++...+  ..+. +|...|..++|+|+|.+|++++.
T Consensus       205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~-gH~~RVs~VafHPsG~~L~Tasf  281 (459)
T KOG0272|consen  205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLE-GHLARVSRVAFHPSGKFLGTASF  281 (459)
T ss_pred             CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhh-cchhhheeeeecCCCceeeeccc
Confidence            334556789999999999999997  56889988 666999999876655  7787 89999999999999999999999


Q ss_pred             CCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeC
Q 015650          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  225 (403)
                      |     .+-++||+.++..+...+ |...|.+++|++||.+++   .|..-+|||+++|+++..+.+|...|..+.|+|+
T Consensus       282 D-----~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN  356 (459)
T KOG0272|consen  282 D-----STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN  356 (459)
T ss_pred             c-----cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCC
Confidence            9     999999999998877777 999999999999999999   4889999999999999999999999999999998


Q ss_pred             CCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                      |-  .+++ |+.|++++|||++. ..+.++.+|..-|+.++|+| .|.+|++++.|++ ++||...+..+++.+.+  |.
T Consensus       357 Gy--~lAT-gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He  430 (459)
T KOG0272|consen  357 GY--HLAT-GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HE  430 (459)
T ss_pred             ce--EEee-cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--Cc
Confidence            75  3454 67999999999998 55678899999999999999 7899999999999 99999999999999997  78


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      +.|.++.+++|+++|++++.|.++++|.
T Consensus       431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  431 GKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.9e-37  Score=240.13  Aligned_cols=260  Identities=22%  Similarity=0.282  Sum_probs=219.5

Q ss_pred             CCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCC
Q 015650           71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (403)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  150 (403)
                      +.....-..+.....+.|+.+.+.||++.||+++...||+||+.+.+.....+++ +|...|.++.|..++..++++++|
T Consensus        26 qa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseD  104 (311)
T KOG0315|consen   26 QALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGSED  104 (311)
T ss_pred             ehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecCCC
Confidence            3333344455666678899999999999999999999999999988876668887 899999999999999999999999


Q ss_pred             CCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCC
Q 015650          151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGV  226 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~  226 (403)
                           |+++|||++...+.+.+++..+|+++..+|+...++   -+|.|++||+....+..++ ......+..+.+.|++
T Consensus       105 -----gt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg  179 (311)
T KOG0315|consen  105 -----GTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG  179 (311)
T ss_pred             -----ceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC
Confidence                 999999999988888899999999999999866555   3789999999987665554 3445678889999998


Q ss_pred             CeEEEEeeCCccCeEEEEEccCC-------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEe
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASK-------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVR  298 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~-------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~  298 (403)
                      ..+..   ....|..++|++-+.       .+..++.|.+.+..+.+|||+++||+++.|.+ ++||+.++. +....+.
T Consensus       180 sml~a---~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~  255 (311)
T KOG0315|consen  180 SMLAA---ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLT  255 (311)
T ss_pred             cEEEE---ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEee
Confidence            85432   347899999998763       23557899999999999999999999999999 999999887 4444555


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650          299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       299 ~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      +  |...++..+||.||+||++++.|+.+++|++..++.+..+.
T Consensus       256 g--h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  256 G--HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             c--CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence            4  77899999999999999999999999999999999644443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-37  Score=256.46  Aligned_cols=248  Identities=17%  Similarity=0.243  Sum_probs=212.8

Q ss_pred             CCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-----CeEEE
Q 015650           71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-----NILAL  144 (403)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~  144 (403)
                      +.....+..+..+|..-|.|++|+|||+.||+|+ ++.|++||..++++.- +.|. +|...|++++|.|     ....+
T Consensus       143 D~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-~~l~-gH~K~It~Lawep~hl~p~~r~l  220 (480)
T KOG0271|consen  143 DLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-RALR-GHKKWITALAWEPLHLVPPCRRL  220 (480)
T ss_pred             ccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-cccc-CcccceeEEeecccccCCCccce
Confidence            3444455578899999999999999999999999 5559999998887653 6676 8999999999965     56789


Q ss_pred             eeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeE-
Q 015650          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLC-  220 (403)
Q Consensus       145 ~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-  220 (403)
                      ++++.|     |.++|||+..++++..+. |..+|+|+.|--+|.+..  -|++|++|+...|++.+++++|...|+.+ 
T Consensus       221 as~skD-----g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la  295 (480)
T KOG0271|consen  221 ASSSKD-----GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA  295 (480)
T ss_pred             ecccCC-----CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence            999999     999999999999999998 999999999988887666  49999999988887777777666655443 


Q ss_pred             ------------------------------------------------------------------------------EE
Q 015650          221 ------------------------------------------------------------------------------AV  222 (403)
Q Consensus       221 ------------------------------------------------------------------------------~~  222 (403)
                                                                                                    .|
T Consensus       296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f  375 (480)
T KOG0271|consen  296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF  375 (480)
T ss_pred             ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence                                                                                          55


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (403)
                      +||+.  ++++ ++.|..|++||.++++ +..+.+|-..|+.++|+.|.++|++|+.|.+ +++||+++.++...+.+  
T Consensus       376 SPd~r--~IAS-aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG--  449 (480)
T KOG0271|consen  376 SPDGR--YIAS-ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG--  449 (480)
T ss_pred             CCCcc--EEEE-eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--
Confidence            55544  5555 4588999999998865 5678899999999999999999999999999 99999999999888886  


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      |...|.++.|+|||+.+++|+.|..+++|.
T Consensus       450 h~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  450 HADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCceEEEEEecCCCceeecCCCceEEEeec
Confidence            778999999999999999999999999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.2e-36  Score=245.20  Aligned_cols=277  Identities=17%  Similarity=0.229  Sum_probs=241.7

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|...|+.+-|+|+-.++++++++. |++||..+++.  +..++ +|...+.++.|+..+.++++++.|     
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsD-----  171 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLR-GHTDSVFDISFDASGKYLATCSSD-----  171 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhh-ccccceeEEEEecCccEEEecCCc-----
Confidence            3445677999999999999999999998555 99999998876  48887 898899999999999999999998     


Q ss_pred             ceEEEEECCC-CceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          156 NKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       156 ~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      -.+++||..+ .++++.+. |+..|.++.|-|.|.+++   -|.+|++|++.++.+++++.+|...+..+.++.|+.  +
T Consensus       172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i  249 (406)
T KOG0295|consen  172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--I  249 (406)
T ss_pred             cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--E
Confidence            7799999877 45666655 899999999999998888   399999999999999999999999999888877764  5


Q ss_pred             EEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEEEcCCCcEE
Q 015650          231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD---------------GQLLATSSTKGTLVRIFNTLDGTLL  294 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~---------------g~~l~s~~~dg~~i~iwd~~~~~~~  294 (403)
                      +++ ++.|.++++|-+.++. ...+..|+.+|.|++|.|.               +.++.+++.|++ |++||+.++.++
T Consensus       250 ~As-~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL  327 (406)
T KOG0295|consen  250 IAS-CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCL  327 (406)
T ss_pred             EEe-cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEE
Confidence            665 5699999999999864 4567899999999999873               359999999999 999999999999


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650          295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (403)
Q Consensus       295 ~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (403)
                      .++.+  |.+.|.+++|+|.|+||+++.+|++|++||+++.+.+..                                  
T Consensus       328 ~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~----------------------------------  371 (406)
T KOG0295|consen  328 FTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT----------------------------------  371 (406)
T ss_pred             EEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec----------------------------------
Confidence            99997  789999999999999999999999999999999986433                                  


Q ss_pred             EEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          375 QFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       375 ~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                       +..|+.-++++.|+.+..++++|+-|-
T Consensus       372 -~~ah~hfvt~lDfh~~~p~VvTGsVdq  398 (406)
T KOG0295|consen  372 -LEAHEHFVTSLDFHKTAPYVVTGSVDQ  398 (406)
T ss_pred             -cCCCcceeEEEecCCCCceEEeccccc
Confidence             345677788899999999999998774

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.3e-35  Score=236.82  Aligned_cols=279  Identities=17%  Similarity=0.200  Sum_probs=236.3

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ...+.+|++.|+.+.|+|+|.+||+|+ |..|.+|++....+.+ ..+. +|...|..+.|..++..+++++.|     .
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-~~lk-gHsgAVM~l~~~~d~s~i~S~gtD-----k  112 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-WVLK-GHSGAVMELHGMRDGSHILSCGTD-----K  112 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-eeec-cccceeEeeeeccCCCEEEEecCC-----c
Confidence            356789999999999999999999998 6669999975444333 4454 899999999999999999999999     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      +|+.||+++|+.++.++ |..-|+.+.-..-|..++    -|+++++||+++.+.+++++ ..-++..+.|...+++.+ 
T Consensus       113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~-  190 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVI-  190 (338)
T ss_pred             eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccccee-
Confidence            99999999999999999 888899888666666666    38999999999988888774 245567788887777643 


Q ss_pred             EeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC----CcEEEEEecCCCcc--
Q 015650          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----GTLLQEVRRGADRA--  304 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~----~~~~~~~~~~~~~~--  304 (403)
                       + |.-|+.|++||++... ...+.+|...|+.+..+|+|.++.+-+.|.+ +++||++-    .+++..+.++.|.-  
T Consensus       191 -s-ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  191 -S-GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             -e-ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence             3 3489999999998754 5678999999999999999999999999999 99999874    45688888766654  


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCce
Q 015650          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (403)
                      ....++|+|++..+.+|+.|..+++||.....-                                   +..+.+|.+.|+
T Consensus       268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~-----------------------------------lyklpGh~gsvn  312 (338)
T KOG0265|consen  268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI-----------------------------------LYKLPGHYGSVN  312 (338)
T ss_pred             hcceeeccCCCCccccccccceEEEeecccccE-----------------------------------EEEcCCcceeEE
Confidence            456779999999999999999999999988662                                   344778889999


Q ss_pred             EEEeccCCCEEEEEccCCC
Q 015650          385 IVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       385 ~~~fs~d~~~l~~~~~dG~  403 (403)
                      .+.|+|....|.+++.|.+
T Consensus       313 ~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  313 EVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             EeeecCCCcEEEEeccCce
Confidence            9999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.6e-35  Score=247.81  Aligned_cols=268  Identities=18%  Similarity=0.283  Sum_probs=234.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ...|++++|+.+|.+||+|..+| ++||+..... .  .++. .|..+|.++.|+..+.++++++-|     +++.+||.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~--~tl~-~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd~  305 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-I--STLG-QHKGPIFSLKWNKKGTYILSGGVD-----GTTILWDA  305 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchh-h--hhhh-ccCCceEEEEEcCCCCEEEeccCC-----ccEEEEec
Confidence            35799999999999999999666 9999976432 2  5564 799999999999999999999999     99999999


Q ss_pred             CCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650          164 HQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       164 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      .+++..+.+. |..+-.++.|-.+..+..  .|+.|+++.+....++.++.+|.+.|..+.|.|.+.  ++++ .+.|++
T Consensus       306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS-~SdD~T  382 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLAS-CSDDGT  382 (524)
T ss_pred             cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEE-ecCCCe
Confidence            9999999999 666668899998888888  699999999998999999999999999999998876  4444 458999


Q ss_pred             EEEEEccC-CceeEEeecCCceEEEEEcCCC---------CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDG---------QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       241 i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g---------~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      ++||.... .....+.+|...|..+.|+|.|         ..|++++.|++ |++||+..+.++.+|..  |..+|.+++
T Consensus       383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysva  459 (524)
T KOG0273|consen  383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSVA  459 (524)
T ss_pred             eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEEE
Confidence            99999665 6677789999999999999954         58899999999 99999999999999975  789999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~  390 (403)
                      |+|+|++||+|+.||.|+||++++++..+.                                    ....+.|..|+|+.
T Consensus       460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~s------------------------------------~~~~~~Ifel~Wn~  503 (524)
T KOG0273|consen  460 FSPNGRYLASGSLDGCVHIWSTKTGKLVKS------------------------------------YQGTGGIFELCWNA  503 (524)
T ss_pred             ecCCCcEEEecCCCCeeEeccccchheeEe------------------------------------ecCCCeEEEEEEcC
Confidence            999999999999999999999999984222                                    12234588899999


Q ss_pred             CCCEEEEEccCCC
Q 015650          391 QKNTVVILGMDGR  403 (403)
Q Consensus       391 d~~~l~~~~~dG~  403 (403)
                      +|+.|.++-.||+
T Consensus       504 ~G~kl~~~~sd~~  516 (524)
T KOG0273|consen  504 AGDKLGACASDGS  516 (524)
T ss_pred             CCCEEEEEecCCC
Confidence            9999999988874

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=226.53  Aligned_cols=255  Identities=16%  Similarity=0.229  Sum_probs=214.8

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc--eeEEEe-
Q 015650           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-  173 (403)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~--~~~~~~-  173 (403)
                      -+|++++ |.+||+|...++.+.  ++++ +....|..+...++...|+.++.      -.|++||+.++.  ++.+++ 
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~--rTiq-h~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~   81 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICS--RTIQ-HPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEG   81 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEE--EEEe-cCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEec
Confidence            4677777 778999999888766  7776 66778999999999999999887      589999999875  588888 


Q ss_pred             cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc
Q 015650          174 FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (403)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~  250 (403)
                      |...|..+.|..+|++++   .||+++|||++...+.+.++ +..++..+.++|+...++.   |..+|.|++||+....
T Consensus        82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis---~dqsg~irvWDl~~~~  157 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELIS---GDQSGNIRVWDLGENS  157 (311)
T ss_pred             cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEe---ecCCCcEEEEEccCCc
Confidence            889999999999999999   49999999999977666664 5689999999998776543   4689999999999864


Q ss_pred             e--eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC------cEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650          251 T--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       251 ~--~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      .  ..+......|.++...|||.+|+.+...|+ .++|++-+.      +++.+++.  |.+.+..+.+|||+++||+++
T Consensus       158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~s  234 (311)
T KOG0315|consen  158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCS  234 (311)
T ss_pred             cccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeec
Confidence            3  233445678999999999999999999999 999998764      34445554  788999999999999999999


Q ss_pred             CCCcEEEEEeecC-CCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650          323 DKGTVHVFNLKVN-SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       323 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                      .|.+++||++++. +.                                   -.++++|...+..++||.||.||++|+.|
T Consensus       235 sdktv~iwn~~~~~kl-----------------------------------e~~l~gh~rWvWdc~FS~dg~YlvTassd  279 (311)
T KOG0315|consen  235 SDKTVKIWNTDDFFKL-----------------------------------ELVLTGHQRWVWDCAFSADGEYLVTASSD  279 (311)
T ss_pred             CCceEEEEecCCceee-----------------------------------EEEeecCCceEEeeeeccCccEEEecCCC
Confidence            9999999999986 21                                   22367777899999999999999999999


Q ss_pred             CC
Q 015650          402 GR  403 (403)
Q Consensus       402 G~  403 (403)
                      +.
T Consensus       280 ~~  281 (311)
T KOG0315|consen  280 HT  281 (311)
T ss_pred             Cc
Confidence            74

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-35  Score=231.05  Aligned_cols=244  Identities=14%  Similarity=0.230  Sum_probs=208.3

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ++-+.+|+..|..+..++||.+.++++ |+.+++||+.+++..  +.|. +|...|.+++|++|...++++++|     .
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t--~~f~-GH~~dVlsva~s~dn~qivSGSrD-----k  127 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST--RRFV-GHTKDVLSVAFSTDNRQIVSGSRD-----K  127 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEE--EEEE-ecCCceEEEEecCCCceeecCCCc-----c
Confidence            466889999999999999999999998 667999999988655  6676 899999999999999999999999     9


Q ss_pred             eEEEEECCCCceeEEEe--cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      +|++|++..........  +.+.|.++.|+|+  ..+++   .|++|++||+++.+....+.+|.+.+..++++|||.  
T Consensus       128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs--  205 (315)
T KOG0279|consen  128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS--  205 (315)
T ss_pred             eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC--
Confidence            99999976554444333  3788999999998  55666   599999999999999999999999999999999997  


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-------C
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-------D  302 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-------~  302 (403)
                      +.+ +|..||.+.+||++.++......|...|.+++|+|+.-.|+.+... . |+|||+.++.++..++...       .
T Consensus       206 lca-sGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-s-IkIwdl~~~~~v~~l~~d~~g~s~~~~  282 (315)
T KOG0279|consen  206 LCA-SGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-S-IKIWDLESKAVVEELKLDGIGPSSKAG  282 (315)
T ss_pred             EEe-cCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCC-c-eEEEeccchhhhhhccccccccccccC
Confidence            344 4679999999999998887777899999999999998777766554 4 9999999998887765421       1


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      .....+++|++||+.|++|..|+.|++|.+..
T Consensus       283 ~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  283 DPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             CcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            22467899999999999999999999999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-35  Score=265.14  Aligned_cols=246  Identities=17%  Similarity=0.257  Sum_probs=218.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCee-----------------------------EEEEecccCcce
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFRE-----------------------------IFRRDFERGGGI  130 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~-----------------------------~~~~~~~~~~~~  130 (403)
                      +..-...++|..|++|+++||.|..+ .|++|.+.+.+.                             ...+.+. +|..
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~G  452 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSG  452 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCC
Confidence            34445679999999999999999854 599999874210                             0112343 8999


Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCcee
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL  206 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~  206 (403)
                      +|....|+|+..+|++++.|     +++++|.+.+..++..++ |..+|..+.|+|-|.+++   .|++.++|......+
T Consensus       453 PVyg~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P  527 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP  527 (707)
T ss_pred             ceeeeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence            99999999999999999999     999999999999999999 999999999999999999   399999999998999


Q ss_pred             eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      ++.+.+|...+.++.|+|+..  |+++ |+.|.++++||..++ .++.+.+|.++|.+++|+|+|++|++|+.|+. |++
T Consensus       528 lRifaghlsDV~cv~FHPNs~--Y~aT-GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~i  603 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSN--YVAT-GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKI  603 (707)
T ss_pred             hhhhcccccccceEEECCccc--cccc-CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEE
Confidence            999999999999999999987  5665 779999999999885 46778899999999999999999999999999 999


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      ||+.+++.+..+.+  |.+.|.+|.|+.||..||+|+.|.+|++||+......
T Consensus       604 WDl~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  604 WDLANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             EEcCCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            99999999999997  6899999999999999999999999999999877653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.8e-35  Score=249.65  Aligned_cols=274  Identities=18%  Similarity=0.277  Sum_probs=229.0

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCC------eeEEEEecc-----cCcceeEEEEeeeCCeEEEeeCC
Q 015650           82 SSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPF------REIFRRDFE-----RGGGIGVVEMLFRCNILALVGGG  148 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~-~l~~~~-~~~i~iw~~~~~------~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~s~~  148 (403)
                      ..|+..|.+.+|+|-.. +|++|+ +-+.++|++...      +..+...+.     ...+..|++++|+.+|..|+++.
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~  254 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS  254 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence            34999999999999776 888887 566999998641      111111111     12346899999999999999999


Q ss_pred             CCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650          149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (403)
                      .+     |.++||+ ..|.++.++. |.++|.++.|+.+|.+++   .|+++.+||..+++..+.+..|..+.-.+.|-.
T Consensus       255 ~~-----G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~  328 (524)
T KOG0273|consen  255 ED-----GEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS  328 (524)
T ss_pred             cC-----cEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence            99     9999999 5677788887 999999999999999988   599999999999999999988777644455544


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                      +..   ++++ +.|+.|+|+.+.. .+..++.+|.+.|.+|.|+|.|.+|++++.|++ ++||+.........+..  |.
T Consensus       329 ~~~---F~ts-~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~--Hs  401 (524)
T KOG0273|consen  329 NDE---FATS-STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA--HS  401 (524)
T ss_pred             Cce---Eeec-CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh--hc
Confidence            432   4443 4899999999887 567788899999999999999999999999999 99999998888888886  77


Q ss_pred             ccEEEEEeCCCCC---------EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650          304 AEIYSLAFSSNAQ---------WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (403)
Q Consensus       304 ~~v~~l~~s~d~~---------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (403)
                      ..|..+.|+|+|.         .|++++.|++|++||+..+.+                                   +.
T Consensus       402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~-----------------------------------i~  446 (524)
T KOG0273|consen  402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP-----------------------------------IH  446 (524)
T ss_pred             cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-----------------------------------eE
Confidence            8999999999764         799999999999999999985                                   34


Q ss_pred             EEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          375 QFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       375 ~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .+..|..+|+.|+|||+|++||+|+.||.
T Consensus       447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~  475 (524)
T KOG0273|consen  447 TLMKHQEPVYSVAFSPNGRYLASGSLDGC  475 (524)
T ss_pred             eeccCCCceEEEEecCCCcEEEecCCCCe
Confidence            46677889999999999999999999984

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.9e-34  Score=254.02  Aligned_cols=292  Identities=15%  Similarity=0.275  Sum_probs=230.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCC--cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      +.-....|..++|+..|.+||.|+.+  .+-||++....-+  ...+ +|...+.+++++||+..+++|++|     |+|
T Consensus       303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV--lKQQ-gH~~~i~~l~YSpDgq~iaTG~eD-----gKV  374 (893)
T KOG0291|consen  303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV--LKQQ-GHSDRITSLAYSPDGQLIATGAED-----GKV  374 (893)
T ss_pred             eecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee--eecc-ccccceeeEEECCCCcEEEeccCC-----CcE
Confidence            33345689999999999999999966  4999999876655  3344 799999999999999999999999     999


Q ss_pred             EEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      +|||...|-++.+|. |...|+.+.|+..+..++   .||+|+.||+...+..+++.. ..++...++.-|..+.++. +
T Consensus       375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~-A  452 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVC-A  452 (893)
T ss_pred             EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEE-e
Confidence            999999999999998 999999999999999888   599999999999999998864 4455554554443333444 4


Q ss_pred             CCcc-CeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEe
Q 015650          235 GLQK-GQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAF  311 (403)
Q Consensus       235 g~~d-~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~  311 (403)
                      |..| -.|.+|++.++++ ..+.+|+++|.+++|+|+|..|++++.|.+ |++||+-.. ....++.   +...+..++|
T Consensus       453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsf  528 (893)
T KOG0291|consen  453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSF  528 (893)
T ss_pred             eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEE
Confidence            5444 4699999999765 557899999999999999999999999999 999998654 3445665   5578999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccC
Q 015650          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (403)
Q Consensus       312 s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d  391 (403)
                      +|||+.|++++-||.|.+||++.+.....+++....               .+.......-.++........+.++||+|
T Consensus       529 rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~---------------~~gR~~~D~~ta~~sa~~K~Ftti~ySaD  593 (893)
T KOG0291|consen  529 RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDL---------------SGGRKETDRITAENSAKGKTFTTICYSAD  593 (893)
T ss_pred             cCCCCeEEEEEecceEEEEEhhhceeeccccchhhc---------------cccccccceeehhhcccCCceEEEEEcCC
Confidence            999999999999999999999998876666533210               00000011001112222357888999999


Q ss_pred             CCEEEEEccC
Q 015650          392 KNTVVILGMD  401 (403)
Q Consensus       392 ~~~l~~~~~d  401 (403)
                      |++|++||..
T Consensus       594 G~~IlAgG~s  603 (893)
T KOG0291|consen  594 GKCILAGGES  603 (893)
T ss_pred             CCEEEecCCc
Confidence            9999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.5e-33  Score=241.32  Aligned_cols=276  Identities=21%  Similarity=0.326  Sum_probs=233.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|.+.|++++|+|++++|++++ ++.|++|++.+.+..  ..+. .|...+..+.|.+++..+++++.+     |.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~   74 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLK-GHTGPVRDVAASADGTYLASGSSD-----KT   74 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEe-cCCcceeEEEECCCCCEEEEEcCC-----Ce
Confidence            34568999999999999999999998 555999999876643  3443 577788899999998788888878     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--e-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      |++|++.+++.+..+. |...+.++.|++++.+++  . ++.|++||+++++....+..+...+..+.+++++.  ++++
T Consensus        75 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~  152 (289)
T cd00200          75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVAS  152 (289)
T ss_pred             EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--EEEE
Confidence            9999999988888887 778999999999977776  3 89999999998888888888888899999999854  3343


Q ss_pred             eCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                       +..++.|++||++. .....+..|...+.++.|+|+++.|++++.++. |++||+.+++.+..+..  |...+.++.|+
T Consensus       153 -~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~  228 (289)
T cd00200         153 -SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFS  228 (289)
T ss_pred             -EcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEc
Confidence             33689999999986 445667788889999999999999999999999 99999999988888854  66799999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~  392 (403)
                      |++.++++++.||.|++|++.+++.                                   ...+..+...+..++|++++
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~-----------------------------------~~~~~~~~~~i~~~~~~~~~  273 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGEC-----------------------------------VQTLSGHTNSVTSLAWSPDG  273 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCcee-----------------------------------EEEccccCCcEEEEEECCCC
Confidence            9988998888899999999987663                                   22344566789999999999


Q ss_pred             CEEEEEccCCC
Q 015650          393 NTVVILGMDGR  403 (403)
Q Consensus       393 ~~l~~~~~dG~  403 (403)
                      +.|++++.||.
T Consensus       274 ~~l~~~~~d~~  284 (289)
T cd00200         274 KRLASGSADGT  284 (289)
T ss_pred             CEEEEecCCCe
Confidence            99999999984

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.7e-35  Score=246.73  Aligned_cols=270  Identities=13%  Similarity=0.194  Sum_probs=227.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ...|..+.|.|+|+.|++|++.| +.+|+.....  ++..++ .|...|.++.|+.++.++++++.+     |.|++|+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqp  167 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQ-AHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQP  167 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhh-hhcccceeEEEccCCCEEEEcCCC-----ceEEeccc
Confidence            45799999999999999999777 9999964332  223344 799999999999999999999999     99999996


Q ss_pred             CCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCcc
Q 015650          164 HQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (403)
Q Consensus       164 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (403)
                      .. ..++.+.  |...|++++|+|+...++   .||+|+|||....+....+.+|.-.+.++.|+|...  ++++ |+.|
T Consensus       168 nm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--Lias-gskD  243 (464)
T KOG0284|consen  168 NM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIAS-GSKD  243 (464)
T ss_pred             ch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeEE-ccCC
Confidence            54 4444554  569999999999654444   489999999998888888899999999999999765  4444 5689


Q ss_pred             CeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC-C
Q 015650          239 GQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-Q  316 (403)
Q Consensus       239 ~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~-~  316 (403)
                      ..|++||.+++ ++..+..|+..|..+.|+|++++|++++.|.. ++++|+++.+.++.+++  |...|+++.|+|-. .
T Consensus       244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~  320 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNES  320 (464)
T ss_pred             ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeecccccccc
Confidence            99999999985 56778899999999999999999999999999 99999998888888886  78899999999954 5


Q ss_pred             EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEE
Q 015650          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV  396 (403)
Q Consensus       317 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~  396 (403)
                      +|.+|+.||.|..|.+...+++..+.                                  ..|+..|+.++|+|-|..|+
T Consensus       321 lftsgg~Dgsvvh~~v~~~~p~~~i~----------------------------------~AHd~~iwsl~~hPlGhil~  366 (464)
T KOG0284|consen  321 LFTSGGSDGSVVHWVVGLEEPLGEIP----------------------------------PAHDGEIWSLAYHPLGHILA  366 (464)
T ss_pred             ceeeccCCCceEEEeccccccccCCC----------------------------------cccccceeeeeccccceeEe
Confidence            78899999999999999666543332                                  45677899999999999999


Q ss_pred             EEccCCC
Q 015650          397 ILGMDGR  403 (403)
Q Consensus       397 ~~~~dG~  403 (403)
                      +|+.|.+
T Consensus       367 tgsnd~t  373 (464)
T KOG0284|consen  367 TGSNDRT  373 (464)
T ss_pred             ecCCCcc
Confidence            9998864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=218.86  Aligned_cols=274  Identities=14%  Similarity=0.209  Sum_probs=228.6

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ...++..+.++|.++.|+-||+|.++++ |++|++|+...+..  .+++. +|...|...+.+.|...+++++.|     
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--iktYs-ghG~EVlD~~~s~Dnskf~s~GgD-----   80 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--IKTYS-GHGHEVLDAALSSDNSKFASCGGD-----   80 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce--eeeec-CCCceeeeccccccccccccCCCC-----
Confidence            3467788999999999999999977665 77899999765544  47887 899999999999999999999999     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCC--ceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      ..+.+||+.+|+.++.+. |...|+.+.|+.+...++   .|.++++||.+.  .++++.+....+.+..+.++..   .
T Consensus        81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---e  157 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---E  157 (307)
T ss_pred             ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---E
Confidence            999999999999999999 999999999999999988   599999999986  5778888887888887777653   2


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                      ++  +|+.||+++.||++.+.... .-...+|+|++|++|++..+.++.|++ |++.|-.+|+++..++++.....=...
T Consensus       158 Iv--aGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  158 IV--AGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             EE--eeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeee
Confidence            33  47899999999999877543 234568999999999999999999999 999999999999999986555555667


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCC-ceEEEe
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS-PYIVAF  388 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f  388 (403)
                      +++....++++|++||.|++||+.....+                                   ..+..+... +..+++
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-----------------------------------sk~~~~~~v~v~dl~~  278 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDETQI-----------------------------------SKLSVVSTVIVTDLSC  278 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccceee-----------------------------------eeeccCCceeEEeeec
Confidence            78888889999999999999999988742                                   223344443 677888


Q ss_pred             ccCCCEEEEEcc
Q 015650          389 GHQKNTVVILGM  400 (403)
Q Consensus       389 s~d~~~l~~~~~  400 (403)
                      +|.-..|+++..
T Consensus       279 hp~~~~f~~A~~  290 (307)
T KOG0316|consen  279 HPTMDDFITATG  290 (307)
T ss_pred             ccCccceeEecC
Confidence            887766666654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9e-33  Score=221.15  Aligned_cols=240  Identities=15%  Similarity=0.198  Sum_probs=208.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCC--e--eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF--R--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      ....-...-|..++|+|.|+++|+|+ |+...||++.+.  +  ....+.+. +|...+.++.|-.|..+ ++++.|   
T Consensus        91 haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~dD~~i-lT~SGD---  165 (343)
T KOG0286|consen   91 HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLDDNHI-LTGSGD---  165 (343)
T ss_pred             eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec-CccceeEEEEEcCCCce-EecCCC---
Confidence            44455667899999999999999998 777999999743  2  23345676 89999999999886654 455555   


Q ss_pred             CCceEEEEECCCCceeEEEe-cCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                        .+..+||+++++.+..|. |.+.|.++.++| +++.++   .|+..++||++.+.+++.|.+|...|..++|.|++..
T Consensus       166 --~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a  243 (343)
T KOG0286|consen  166 --MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA  243 (343)
T ss_pred             --ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe
Confidence              899999999999999999 999999999999 777777   5999999999999999999999999999999999874


Q ss_pred             EEEEeeCCccCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                        ++ +|++|++.++||++..+...+..|   ..+|++++||..|++|++|..|.+ +.+||.-.++.+..+.+  |++.
T Consensus       244 --fa-tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNR  317 (343)
T KOG0286|consen  244 --FA-TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENR  317 (343)
T ss_pred             --ee-ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCe
Confidence              44 478999999999999655444444   457999999999999999999999 99999999999999986  8899


Q ss_pred             EEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          306 IYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      |.++..+|||.-|++|+.|.+|+||.
T Consensus       318 vScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  318 VSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=245.23  Aligned_cols=318  Identities=19%  Similarity=0.252  Sum_probs=260.8

Q ss_pred             CCCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        75 ~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      ....+.+.+|...|.++.|+.|.++|++|+ |-.++||.++..+......+. +|...|.+..|..+...+++.+.|   
T Consensus       135 Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~-gHkd~VvacfF~~~~~~l~tvskd---  210 (893)
T KOG0291|consen  135 FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALN-GHKDYVVACFFGANSLDLYTVSKD---  210 (893)
T ss_pred             ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEecc-CCCcceEEEEeccCcceEEEEecC---
Confidence            334478899999999999999999999998 555999999988876667776 899999999999999999999999   


Q ss_pred             CCceEEEEECCC-----------------------Cce-----e-EEE-e-----cCCceeEEEEecCceEEE---ecCe
Q 015650          154 PLNKVMIWDDHQ-----------------------SRC-----I-GEL-S-----FRSEVRSVKLRRDRIIVV---LEQK  195 (403)
Q Consensus       154 ~~~~i~iwd~~~-----------------------~~~-----~-~~~-~-----~~~~i~~~~~~~~~~~~~---~d~~  195 (403)
                        |.+.+|....                       ++.     . ... +     ....|++.+|++....++   ..|.
T Consensus       211 --G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~  288 (893)
T KOG0291|consen  211 --GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGE  288 (893)
T ss_pred             --ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCe
Confidence              9999998651                       111     0 011 1     236789999999888887   5788


Q ss_pred             EEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEE
Q 015650          196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLA  274 (403)
Q Consensus       196 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~  274 (403)
                      ..+|.+....+++.+.....++..++|+..|+.+.+.+  +.-|++.||++..... ...++|...+++++++|||+++|
T Consensus       289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~--~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~ia  366 (893)
T KOG0291|consen  289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC--SKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIA  366 (893)
T ss_pred             eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC--CccceEEEEEeeccceeeeccccccceeeEEECCCCcEEE
Confidence            99999999999999988888999999999999655554  5678999999998654 45678999999999999999999


Q ss_pred             EEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCC--CCCCc
Q 015650          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTS--DPTLP  352 (403)
Q Consensus       275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~  352 (403)
                      +|+.||. |+|||..++-|+.+|..  |.+.|+.+.|+..|+.|++.+-||+|+.||+....+.+++......  .+...
T Consensus       367 TG~eDgK-VKvWn~~SgfC~vTFte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav  443 (893)
T KOG0291|consen  367 TGAEDGK-VKVWNTQSGFCFVTFTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV  443 (893)
T ss_pred             eccCCCc-EEEEeccCceEEEEecc--CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence            9999999 99999999999999996  7899999999999999999999999999999999998888744332  22223


Q ss_pred             ccccc-cccccccceeeeeeeeEE------EEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          353 TSSLS-FIKGVLPKYFSSEWSVAQ------FRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       353 ~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      +.+.. +.++....+--..|++.+      +.+|+++|.+++|+|+++.|++|+.|.|
T Consensus       444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT  501 (893)
T KOG0291|consen  444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT  501 (893)
T ss_pred             cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce
Confidence            32222 223333333335566543      6789999999999999999999999975

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.4e-33  Score=257.00  Aligned_cols=274  Identities=17%  Similarity=0.266  Sum_probs=232.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      ..+...|.++.|+++|+++++++ ++.+++|+....+....+.+. +|...|..++|++++.++++++.|     ++|+|
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D-----~tiri  229 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDD-----KTLRI  229 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCC-----ceEEE
Confidence            33488999999999999999987 566999998655522335554 799999999999999999999999     99999


Q ss_pred             EEC-CCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          161 WDD-HQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       161 wd~-~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      ||+ ..+..++++. |...|++++|+|++.+++   .|++|++||+++++++..+.+|...+..++|++++..  +++ +
T Consensus       230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~--l~s-~  306 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL--LVS-A  306 (456)
T ss_pred             eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE--EEE-c
Confidence            999 5558889998 999999999999997777   5999999999999999999999999999999999884  343 3


Q ss_pred             CccCeEEEEEccCCce---eEEeecCCc--eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc-ccEEEE
Q 015650          236 LQKGQVRVEHYASKRT---KFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSL  309 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~~---~~~~~~~~~--i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l  309 (403)
                      +.|+.|++||+.++..   ..+..+...  ++++.|+|++.+|++++.|+. +++||+..++.+..+..+... ..+.+.
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecc
Confidence            5799999999999873   456665554  999999999999999999999 999999999999999875322 145566


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEe-CCCceEEEe
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAF  388 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f  388 (403)
                      ..++.+.++++|+.|+.|++|++.++....                                   .+.+| ...+..++|
T Consensus       386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~-----------------------------------~l~~h~~~~~~~~~~  430 (456)
T KOG0266|consen  386 TLSTGGKLIYSGSEDGSVYVWDSSSGGILQ-----------------------------------RLEGHSKAAVSDLSS  430 (456)
T ss_pred             cccCCCCeEEEEeCCceEEEEeCCccchhh-----------------------------------hhcCCCCCceecccc
Confidence            678899999999999999999999977432                                   24555 567778899


Q ss_pred             ccCCCEEEEEcc
Q 015650          389 GHQKNTVVILGM  400 (403)
Q Consensus       389 s~d~~~l~~~~~  400 (403)
                      ++..+++++++.
T Consensus       431 ~~~~~~~~s~s~  442 (456)
T KOG0266|consen  431 HPTENLIASSSF  442 (456)
T ss_pred             CCCcCeeeecCc
Confidence            999999998884

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.7e-33  Score=229.19  Aligned_cols=284  Identities=17%  Similarity=0.236  Sum_probs=242.6

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ......+|.+-|.|+++.|...+|++|+ |++++|||+.+++..  .++. +|...+..+++++.-.++++++.|     
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltlt-Ghi~~vr~vavS~rHpYlFs~ged-----  214 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLT-GHIETVRGVAVSKRHPYLFSAGED-----  214 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeec-chhheeeeeeecccCceEEEecCC-----
Confidence            3478899999999999999999999998 666999999998766  6676 899999999999999999999999     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      +.|+-||++..+.++.+. |-..|.+++.+|.-..++   .|.++++||+++...+..+.+|..++..+.+.+-+.+++ 
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi-  293 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI-  293 (460)
T ss_pred             CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE-
Confidence            999999999999999998 999999999999877777   488999999999999999999999999999888666533 


Q ss_pred             EeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                        +|+.|++|++||++.++ ...+..|+..+.+++.+|....+|+++.|.  |+-|++..|..+..+.+  |...|++++
T Consensus       294 --t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~  367 (460)
T KOG0285|consen  294 --TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLS  367 (460)
T ss_pred             --EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeee
Confidence              25699999999999865 456788999999999999999999999987  89999999999988776  778999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~  390 (403)
                      ...|| ++++|+++|.+.+||.+++-+....+..                 ..|..          -..+..|.+.+|..
T Consensus       368 ~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~-----------------vqpGS----------l~sEagI~as~fDk  419 (460)
T KOG0285|consen  368 VNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI-----------------VQPGS----------LESEAGIFASCFDK  419 (460)
T ss_pred             eccCc-eEEEcCCceEEEEEecCcCccccccccc-----------------ccCCc----------cccccceeEEeecc
Confidence            98775 7789999999999999998764433200                 11100          01145688889999


Q ss_pred             CCCEEEEEccCCC
Q 015650          391 QKNTVVILGMDGR  403 (403)
Q Consensus       391 d~~~l~~~~~dG~  403 (403)
                      .|..|++|..|.+
T Consensus       420 tg~rlit~eadKt  432 (460)
T KOG0285|consen  420 TGSRLITGEADKT  432 (460)
T ss_pred             cCceEEeccCCcc
Confidence            9999999988854

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-33  Score=220.17  Aligned_cols=289  Identities=15%  Similarity=0.173  Sum_probs=238.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|+.+|+-|.|+.+|.+|.+++ |....||-..+++.+  -++. +|...|+++..+.+...+++++.|     .+
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~-GHtGavW~~Did~~s~~liTGSAD-----~t   75 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYD-GHTGAVWCCDIDWDSKHLITGSAD-----QT   75 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeec-CCCceEEEEEecCCcceeeecccc-----ce
Confidence            35678999999999999999999998 566999987777665  6776 899999999999999999999999     99


Q ss_pred             EEEEECCCCceeEEEecCCceeEEEEecCceEEE--e------cCeEEEEEcCC-------ceeeeEeeccCCCceeEEE
Q 015650          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L------EQKIFVYNFAD-------LKLLHQIETIANPKGLCAV  222 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~------d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~  222 (403)
                      +++||+++|+.+..++...+|..+.|+.+|.+++  .      .+.|.++|++.       .+++..+..+...+....|
T Consensus        76 ~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W  155 (327)
T KOG0643|consen   76 AKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW  155 (327)
T ss_pred             eEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence            9999999999999999999999999999998777  3      35799999983       4557777777888888999


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccCCce--eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (403)
                      .|-++.  +++ |.++|.|..||.+++..  .....|...|+.|++++|..++++++.|.+ -++||..+.++++++.  
T Consensus       156 g~l~~~--ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~--  229 (327)
T KOG0643|consen  156 GPLGET--IIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYT--  229 (327)
T ss_pred             cccCCE--EEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEee--
Confidence            998873  443 56999999999998543  335679999999999999999999999999 9999999999999998  


Q ss_pred             CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC
Q 015650          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (403)
Q Consensus       301 ~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (403)
                       ...+|++.+++|....++.|+.....   |+.+-.                ....+|-+++....++++  +.++++|=
T Consensus       230 -te~PvN~aaisP~~d~VilgGGqeA~---dVTTT~----------------~r~GKFEArFyh~i~eEE--igrvkGHF  287 (327)
T KOG0643|consen  230 -TERPVNTAAISPLLDHVILGGGQEAM---DVTTTS----------------TRAGKFEARFYHLIFEEE--IGRVKGHF  287 (327)
T ss_pred             -ecccccceecccccceEEecCCceee---eeeeec----------------ccccchhhhHHHHHHHHH--hccccccc
Confidence             45799999999988888777644332   333222                111223344444444444  67789999


Q ss_pred             CCceEEEeccCCCEEEEEccCCC
Q 015650          381 GSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       381 ~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ++++.|||||||+..++|++||.
T Consensus       288 GPINsvAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  288 GPINSVAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             cCcceeEECCCCcccccCCCCce
Confidence            99999999999999999999983

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.6e-32  Score=215.48  Aligned_cols=283  Identities=14%  Similarity=0.207  Sum_probs=231.2

Q ss_pred             CCccccCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcC-CCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (403)
                      .....+.+|.++|..++|+|- |.+||+++ |+.||||+.. ...-.+...+..+|...|.+++|+|.+.+|++++-|  
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD--   82 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD--   82 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc--
Confidence            344677899999999999998 88999988 5569999987 344455566777899999999999999999999999  


Q ss_pred             CCCceEEEEECCCC--ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc---eeeeEeeccCCCceeEEEe
Q 015650          153 YPLNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAVS  223 (403)
Q Consensus       153 ~~~~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~  223 (403)
                         .++.||.-..+  +++..++ |+..|.+++|+++|.+|+   -|..|.||.+..+   ++...++.|...+..+.|+
T Consensus        83 ---~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   83 ---ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH  159 (312)
T ss_pred             ---ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence               99999986654  6788888 999999999999999999   3899999998743   5677889999999999999


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEcc-C---CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYA-S---KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~-~---~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      |..+  +|++ ++.|.+|++|+-. .   ..+.++.+|...|.+++|++.|..|++++.|++ |+||.+.+     .+..
T Consensus       160 Pt~d--lL~S-~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~~  230 (312)
T KOG0645|consen  160 PTED--LLFS-CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLSG  230 (312)
T ss_pred             CCcc--eeEE-eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccch
Confidence            9766  3443 4589999999876 3   457889999999999999999999999999999 99998652     2222


Q ss_pred             CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEe
Q 015650          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV  379 (403)
Q Consensus       300 ~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (403)
                       .|...+..+.|.  ...|++++.|+.|++|.-...-..+.+.                   ++         ..+-..|
T Consensus       231 -~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-------------------l~---------~~~~~aH  279 (312)
T KOG0645|consen  231 -MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-------------------LL---------AKKEGAH  279 (312)
T ss_pred             -hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-------------------HH---------Hhhhccc
Confidence             367889999997  5689999999999999887432111110                   00         1124567


Q ss_pred             CCCceEEEeccC-CCEEEEEccCCC
Q 015650          380 EGSPYIVAFGHQ-KNTVVILGMDGR  403 (403)
Q Consensus       380 ~~~~~~~~fs~d-~~~l~~~~~dG~  403 (403)
                      +..|+.|+|.|. .+.|++|+.||.
T Consensus       280 e~dVNsV~w~p~~~~~L~s~~DDG~  304 (312)
T KOG0645|consen  280 EVDVNSVQWNPKVSNRLASGGDDGI  304 (312)
T ss_pred             ccccceEEEcCCCCCceeecCCCce
Confidence            779999999995 799999999994

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=2.8e-31  Score=219.34  Aligned_cols=312  Identities=33%  Similarity=0.582  Sum_probs=256.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ....|..+.|+.|...|..|+.+|.++|+.++..+.. ...  .....|..+.|+....++++....     ..+++.++
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~-~~~--~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~   75 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCF-SKD--TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHF   75 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCceeEEecCchHHhh-ccc--CCCeEEEEeecccceeEEEecCCC-----ceEEEEEc
Confidence            3456788889999999999999999999998776632 222  366789999999999999998655     78999999


Q ss_pred             CCCceeEEEecCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeecc-CCCceeEEEeeCCCeEEEEeeCC-ccCeE
Q 015650          164 HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL-QKGQV  241 (403)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~-~d~~i  241 (403)
                      +.+..++.+.+...|.+|.++.+..+++....|+|||+++.++++++... .++...++++++..+.+++..++ ..|.|
T Consensus        76 Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   76 KKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             ccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            99999999999999999999999999998888999999999999999765 56677899999998888888554 56899


Q ss_pred             EEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 015650          242 RVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (403)
Q Consensus       242 ~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s  320 (403)
                      .+||..+ .....+..|++.+.+++|+++|.+||+++..|+.||||.+.+|+.+.+|+.+.....|.+++|+||+++|++
T Consensus       156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            9999888 667788999999999999999999999999999999999999999999998877778999999999999999


Q ss_pred             EeCCCcEEEEEeecCCCCCCCCCCCCC--CCCCcccccccccccccceeeeeeeeEEEEEeCCCc-eEEEecc--CCCEE
Q 015650          321 SSDKGTVHVFNLKVNSGSARSEPRSTS--DPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP-YIVAFGH--QKNTV  395 (403)
Q Consensus       321 ~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fs~--d~~~l  395 (403)
                      .+..++|+||.+++....+.-.+..+.  ..........++...+...+...+.++..++++... ..+++++  +..++
T Consensus       236 sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v  315 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRV  315 (391)
T ss_pred             ecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEE
Confidence            999999999999987633222111110  001111122244455555667777888888888654 6677774  78999


Q ss_pred             EEEccCCC
Q 015650          396 VILGMDGR  403 (403)
Q Consensus       396 ~~~~~dG~  403 (403)
                      .+++.||.
T Consensus       316 ~vas~dG~  323 (391)
T KOG2110|consen  316 LVASYDGH  323 (391)
T ss_pred             EEEEcCCe
Confidence            99999984

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.5e-32  Score=216.50  Aligned_cols=275  Identities=18%  Similarity=0.274  Sum_probs=225.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCc
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~  156 (403)
                      +.+.+|...|.+++|+.+|..|++|+ ++.+++|+++........... +|...+-.++|++. ...+++++.|     .
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~d-----k   87 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGD-----K   87 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEecCC-----c
Confidence            55678999999999999999999998 666999999877555444444 77778888888652 3345555555     8


Q ss_pred             eEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      +|++||++.++++..+.....-..+.|+|+|.+++   -|..|...|.++.+.+...+. ...+.-++|+ ..+.+++++
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~-~~nd~Fflt  165 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWN-NSNDLFFLT  165 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeec-CCCCEEEEe
Confidence            99999999999999998766677789999998888   377899999988776665532 3445667888 455566666


Q ss_pred             eCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                      .|  .|.|.|..... +.+..+++|.....||.|+|+|+|||+|+.|.. +.+||+...-+++.+..  +.-+|..|.||
T Consensus       166 ~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS  240 (313)
T KOG1407|consen  166 NG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFS  240 (313)
T ss_pred             cC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEec
Confidence            44  58999988876 677889999999999999999999999999999 99999999999999986  67899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~  392 (403)
                      .||++||++++|..|-|=++++|..                                .|.+    .++++...|||+|..
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~--------------------------------~~eI----~~~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDR--------------------------------VWEI----PCEGPTFTVAWHPKR  284 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCe--------------------------------EEEe----eccCCceeEEecCCC
Confidence            9999999999999999999999983                                2322    135677889999999


Q ss_pred             CEEEEEccCC
Q 015650          393 NTVVILGMDG  402 (403)
Q Consensus       393 ~~l~~~~~dG  402 (403)
                      ..||-++.|.
T Consensus       285 ~LLAyA~ddk  294 (313)
T KOG1407|consen  285 PLLAYACDDK  294 (313)
T ss_pred             ceeeEEecCC
Confidence            9999988773

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-33  Score=233.90  Aligned_cols=281  Identities=14%  Similarity=0.181  Sum_probs=235.0

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      ...++..|.+.|+-+.||++|++||+++ |.+..||.+..... .+.+++. +|..+|..+.|+||..++++++.+    
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~----  290 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFD----  290 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCch----
Confidence            3478899999999999999999999999 55588998754433 3446776 899999999999999999999988    


Q ss_pred             CceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccC-CCceeEEEeeCCCe
Q 015650          155 LNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGS  228 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  228 (403)
                       ..+.+||+.+|.+...+.  +...+.+++|.|||..++   .|++|..||+. |..+...++.. ..+..+++.+||+.
T Consensus       291 -e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  291 -EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             -HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE
Confidence             889999999999999988  458899999999998777   49999999985 55555554433 44788999999998


Q ss_pred             EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      +++++   .|..|++++......+.+.....+|+++++|.||+++++.-.+.. |++||++..+.++.+.++.....+-.
T Consensus       369 vl~v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIr  444 (519)
T KOG0293|consen  369 VLLVT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIR  444 (519)
T ss_pred             EEEEe---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEE
Confidence            87775   889999999988666655566778999999999999998888888 99999999888888887544444555


Q ss_pred             EEeCC-CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650          309 LAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (403)
Q Consensus       309 l~~s~-d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (403)
                      -+|.- +..++++|++|+.|+||+..+++.                                   +..+.+|...|++|+
T Consensus       445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkl-----------------------------------l~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  445 SCFGGGNDKFIASGSEDSKVYIWHRISGKL-----------------------------------LAVLSGHSKTVNCVS  489 (519)
T ss_pred             eccCCCCcceEEecCCCceEEEEEccCCce-----------------------------------eEeecCCcceeeEEe
Confidence            55653 557999999999999999999985                                   556788899999999


Q ss_pred             ecc-CCCEEEEEccCCC
Q 015650          388 FGH-QKNTVVILGMDGR  403 (403)
Q Consensus       388 fs~-d~~~l~~~~~dG~  403 (403)
                      |.| |-..+|+|+.||+
T Consensus       490 wNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  490 WNPADPEMFASASDDGT  506 (519)
T ss_pred             cCCCCHHHhhccCCCCe
Confidence            999 5688999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-31  Score=230.68  Aligned_cols=284  Identities=16%  Similarity=0.221  Sum_probs=230.1

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      .-...+..|..-|+|+.|+|||.++++.+ |+.+.|||=.+++.+....-..+|...|.++.|+||...+++.+.|    
T Consensus       181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD----  256 (603)
T KOG0318|consen  181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD----  256 (603)
T ss_pred             eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC----
Confidence            33467888999999999999999999877 6669999988888775444335799999999999999999999999    


Q ss_pred             CceEEEEECCCCceeEEEecC----CceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          155 LNKVMIWDDHQSRCIGELSFR----SEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                       .+++|||+.+.++++++...    ..-..+.|..|..+.+ .+|+|.+++...+..++.+.+|...|+++.++++++.+
T Consensus       257 -kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i  335 (603)
T KOG0318|consen  257 -KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI  335 (603)
T ss_pred             -ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence             99999999999999999833    3344566765555555 69999999999999999999999999999999999644


Q ss_pred             EEEeeCCccCeEEEEEccCCce--------------------------------e-------------------------
Q 015650          230 VLVCPGLQKGQVRVEHYASKRT--------------------------------K-------------------------  252 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~--------------------------------~-------------------------  252 (403)
                      +   +|+.||.|.-|+...+..                                +                         
T Consensus       336 ~---SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la  412 (603)
T KOG0318|consen  336 Y---SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA  412 (603)
T ss_pred             E---eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence            3   256899999998754210                                0                         


Q ss_pred             -----------------EEeec--------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          253 -----------------FIMAH--------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       253 -----------------~~~~~--------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                                       .++.+        .-...+++++|++..++.|+.|+. |+||.+..++...+.....|.++|+
T Consensus       413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT  491 (603)
T KOG0318|consen  413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAIT  491 (603)
T ss_pred             EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCce
Confidence                             00000        112356788999999999999999 9999998766544433334889999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (403)
                      +++||||+.+||++...+.+.+||+.+.+..                                  ......|...|.+++
T Consensus       492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~----------------------------------~~~w~FHtakI~~~a  537 (603)
T KOG0318|consen  492 DVAYSPDGAYLAAGDASRKVVLYDVASREVK----------------------------------TNRWAFHTAKINCVA  537 (603)
T ss_pred             EEEECCCCcEEEEeccCCcEEEEEcccCcee----------------------------------cceeeeeeeeEEEEE
Confidence            9999999999999999999999999998841                                  223566788999999


Q ss_pred             eccCCCEEEEEccCC
Q 015650          388 FGHQKNTVVILGMDG  402 (403)
Q Consensus       388 fs~d~~~l~~~~~dG  402 (403)
                      |+|+...||+|+-|-
T Consensus       538 WsP~n~~vATGSlDt  552 (603)
T KOG0318|consen  538 WSPNNKLVATGSLDT  552 (603)
T ss_pred             eCCCceEEEeccccc
Confidence            999999999999874

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.1e-34  Score=242.84  Aligned_cols=279  Identities=15%  Similarity=0.187  Sum_probs=236.3

Q ss_pred             cccCCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~-d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ..+.+|+..|+++.|.| .+.+|++++ |..|+||++-... .+.+++. +|..+|.++.|+.++..+.+++-|     +
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD-----~  280 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-RCLRTFK-GHRKPVRDASFNNCGTSFLSASFD-----R  280 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-ceehhhh-cchhhhhhhhccccCCeeeeeecc-----e
Confidence            56899999999999999 788899888 5559999997633 3347887 899999999999999999999999     9


Q ss_pred             eEEEEECCCCceeEEEecCCceeEEEEecCc-e-EEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-I-IVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      .|++||+++|+++..+.....+.++.|+||+ . +++  +|+.|+.||+++++.++++..|.+.+..+.|-+++..++..
T Consensus       281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9999999999999999989999999999987 3 333  69999999999999999999999999999999998875544


Q ss_pred             eeCCccCeEEEEEccCCceeEE--eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC---cEEEEEecCCCcccEE
Q 015650          233 CPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGADRAEIY  307 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~~~~~--~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~---~~~~~~~~~~~~~~v~  307 (403)
                         ++|+.++||+.+.......  ..+.....++..+|++.++++-+.|.. |.+|.+...   ...+.++++.-.+.-.
T Consensus       361 ---SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~  436 (503)
T KOG0282|consen  361 ---SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSC  436 (503)
T ss_pred             ---ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCcee
Confidence               4899999999988554332  233445678999999999999999999 999986532   2334566655556778


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (403)
                      .+.|||||++|++|..||.+.+||.++-+.                                   +..++.|++.+..+.
T Consensus       437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-----------------------------------~~~lkah~~~ci~v~  481 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-----------------------------------VSKLKAHDQPCIGVD  481 (503)
T ss_pred             eEEEcCCCCeEEeecCCccEEEeechhhhh-----------------------------------hhccccCCcceEEEE
Confidence            899999999999999999999999999884                                   444678888999999


Q ss_pred             eccCC-CEEEEEccCCC
Q 015650          388 FGHQK-NTVVILGMDGR  403 (403)
Q Consensus       388 fs~d~-~~l~~~~~dG~  403 (403)
                      |+|.. ..+|+++.||.
T Consensus       482 wHP~e~Skvat~~w~G~  498 (503)
T KOG0282|consen  482 WHPVEPSKVATCGWDGL  498 (503)
T ss_pred             ecCCCcceeEecccCce
Confidence            99964 78899999983

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.2e-32  Score=222.99  Aligned_cols=276  Identities=14%  Similarity=0.142  Sum_probs=232.4

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....|..|+..|.+++.+|+.+++++|+ |+.-.||++.++...  ..+. +|...|+++.|+.++.+|++++.+     
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--~elt-gHKDSVt~~~FshdgtlLATGdms-----  127 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--GELT-GHKDSVTCCSFSHDGTLLATGDMS-----  127 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--eEec-CCCCceEEEEEccCceEEEecCCC-----
Confidence            3467899999999999999999999998 666999999888754  5565 899999999999999999999999     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      |.|+||...++.....+. .-..|.-+.|+|.+.+++   .||.+.+|.+..+...+.+.+|..++.+=.|.|+|++++.
T Consensus       128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             ccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence            999999999999888886 667888999999888777   5999999999998888999999999999999999987655


Q ss_pred             EeeCCccCeEEEEEccCCcee-EEe---------------------------------------------------ecCC
Q 015650          232 VCPGLQKGQVRVEHYASKRTK-FIM---------------------------------------------------AHDS  259 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~-~~~---------------------------------------------------~~~~  259 (403)
                      +   ..||+|++|+..++... .+.                                                   .+..
T Consensus       208 g---y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~  284 (399)
T KOG0296|consen  208 G---YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE  284 (399)
T ss_pred             E---ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchh
Confidence            5   47999999999874321 000                                                   1111


Q ss_pred             ceEEEEE---cCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          260 RIACFAL---TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       260 ~i~~~~~---sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .+.|+.+   +..-.+.|+|+-||+ |.|||+...++...+.   |...|..+.|-+ ..+|++++.+|.|+.||.++++
T Consensus       285 ~~esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  285 LDESVESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             hhhhhhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence            2223333   334457789999999 9999999888877776   888999999988 7899999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .                                   ...+++|...|.+++++|+.+.+++++.|++
T Consensus       360 l-----------------------------------~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  360 L-----------------------------------KFTYTGHQMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             e-----------------------------------EEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence            4                                   3347888899999999999999999999974

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-32  Score=241.65  Aligned_cols=250  Identities=14%  Similarity=0.194  Sum_probs=220.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      +.+..++++|-++.|+|...+++++--+| |.||+.++...+  +.+. -...+|.+..|-....++++|++|     ..
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV--ksfe-V~~~PvRa~kfiaRknWiv~GsDD-----~~   78 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV--KSFE-VSEVPVRAAKFIARKNWIVTGSDD-----MQ   78 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceee--eeee-ecccchhhheeeeccceEEEecCC-----ce
Confidence            44566899999999999999998887554 999999877655  6665 567788999999999999999999     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--e-cCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      |+||+..+++.+..|+ |..-|++++.+|...++.  + |-+|++||.+. ..+.+++++|.+-+..++|.|.+.+.+..
T Consensus        79 IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS  158 (794)
T KOG0276|consen   79 IRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS  158 (794)
T ss_pred             EEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence            9999999999999999 999999999999988888  2 66999999986 47888999999999999999987775543


Q ss_pred             eeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCC--CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g--~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                        ++-|++|+||.+.. ....++.+|...|+|+.|-+.|  .+|++|+.|.+ |+|||.++..|++++.+  |...|..+
T Consensus       159 --~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v  233 (794)
T KOG0276|consen  159 --ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFV  233 (794)
T ss_pred             --eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEE
Confidence              46899999999987 4567889999999999998744  69999999999 99999999999999997  66789999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~  341 (403)
                      .|+|.-.++++|++||+|+||+-.+.+.+..+
T Consensus       234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             EecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence            99999999999999999999999998865443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.9e-33  Score=248.71  Aligned_cols=231  Identities=19%  Similarity=0.265  Sum_probs=203.8

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-------------------------------eeEEEe-c
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-------------------------------CIGELS-F  174 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-------------------------------~~~~~~-~  174 (403)
                      .....+.+..|+++...+|.|-.|     ..|++|.+...+                               ..+++. |
T Consensus       376 nt~~~v~ca~fSddssmlA~Gf~d-----S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDSSMLACGFVD-----SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             EcCCcceeEeecCCcchhhccccc-----cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            355678888899999988888888     899999876311                               122344 9


Q ss_pred             CCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-Cc
Q 015650          175 RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KR  250 (403)
Q Consensus       175 ~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~  250 (403)
                      .++|..+.|+|+.++++   .|+++++|.+.+..++..+++|..++..+.|+|.|  .+++++ +.|++.++|.... ..
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFata-s~D~tArLWs~d~~~P  527 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATA-SHDQTARLWSTDHNKP  527 (707)
T ss_pred             CCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEec-CCCceeeeeecccCCc
Confidence            99999999999999999   38999999999999999999999999999999774  577764 5899999999877 56


Q ss_pred             eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 015650          251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (403)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw  330 (403)
                      .+.+.+|...|.|+.|+|+..|+++||.|.+ |++||+.+|..++.|.+  |.++|.+++|||+|++|++|+.||.|++|
T Consensus       528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~I~iW  604 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGDEDGLIKIW  604 (707)
T ss_pred             hhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecccCCcEEEE
Confidence            6778899999999999999999999999999 99999999999999987  78999999999999999999999999999


Q ss_pred             EeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          331 NLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       331 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      |+.+++.                                   +.+++.|.+.++.+.||.||+.||+|+.|.+
T Consensus       605 Dl~~~~~-----------------------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  605 DLANGSL-----------------------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             EcCCCcc-----------------------------------hhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence            9999985                                   3446778899999999999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.2e-31  Score=259.61  Aligned_cols=285  Identities=15%  Similarity=0.197  Sum_probs=218.6

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCe----e--EEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCC
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFR----E--IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQ  152 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~----~--~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~  152 (403)
                      ...|.+.|.+++|+|+|++||+|+. +.|+||++....    .  .....+.  +...+.++.|++ ++..+++++.|  
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~D--  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFE--  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCC--
Confidence            3458999999999999999999985 459999975321    0  0112232  345788888876 46678899888  


Q ss_pred             CCCceEEEEECCCCceeEEEe-cCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                         |.|++||+.+++.+..+. |...|.+++|+| ++.+++   .|++|++||+++++.+..+..+ ..+.++.|.+...
T Consensus       555 ---g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g  630 (793)
T PLN00181        555 ---GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG  630 (793)
T ss_pred             ---CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC
Confidence               999999999999988887 999999999997 677666   4899999999999888888654 4667777755433


Q ss_pred             eEEEEeeCCccCeEEEEEccCCc--eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC------CcEEEEEec
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD------GTLLQEVRR  299 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~------~~~~~~~~~  299 (403)
                      . ++++ |+.|+.|++||++...  ...+.+|...|.++.|. ++.+|++++.|+. |+|||+..      .+++..+.+
T Consensus       631 ~-~lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g  706 (793)
T PLN00181        631 R-SLAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG  706 (793)
T ss_pred             C-EEEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence            3 3444 4589999999998743  45678899999999997 7889999999999 99999974      356777775


Q ss_pred             CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE--EEE
Q 015650          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA--QFR  377 (403)
Q Consensus       300 ~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  377 (403)
                        |...+..+.|++++.+|++|+.|+.|++|+.........+.                        +...+...  ...
T Consensus       707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~------------------------~~~~~~~~~~~~~  760 (793)
T PLN00181        707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK------------------------FKTIDPVSGLEVD  760 (793)
T ss_pred             --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe------------------------cccCCcccccccC
Confidence              67889999999999999999999999999987664321110                        00000000  012


Q ss_pred             EeCCCceEEEeccCCCEEEEEccCCC
Q 015650          378 LVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       378 ~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .++..|..++|+|+++.|++|+.||+
T Consensus       761 ~~~~~V~~v~ws~~~~~lva~~~dG~  786 (793)
T PLN00181        761 DASQFISSVCWRGQSSTLVAANSTGN  786 (793)
T ss_pred             CCCcEEEEEEEcCCCCeEEEecCCCc
Confidence            23456899999999999999999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-32  Score=223.26  Aligned_cols=245  Identities=16%  Similarity=0.266  Sum_probs=217.6

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ...+.+|.+.|..|+|+..|++|++++.+. +++||.+..... .+.+. +|...|.++.|-|.+.+++++++|     .
T Consensus       143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c-~ks~~-gh~h~vS~V~f~P~gd~ilS~srD-----~  215 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC-IKSLI-GHEHGVSSVFFLPLGDHILSCSRD-----N  215 (406)
T ss_pred             hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHH-HHHhc-CcccceeeEEEEecCCeeeecccc-----c
Confidence            367899999999999999999999999666 999998764222 14444 789999999999999999999999     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC-----
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-----  227 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  227 (403)
                      +|+.|++.+|.++.++. |.+.|.-+..+.||.+++   .|.++++|-+.++++...++.|..++.+++|.|...     
T Consensus       216 tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~  295 (406)
T KOG0295|consen  216 TIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSIS  295 (406)
T ss_pred             ceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchh
Confidence            99999999999999999 999999999999999999   388999999999999999999999999999987421     


Q ss_pred             -------eEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          228 -------SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       228 -------~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                             ..-+..+++.|++|++||+.++. +.++.+|..+|..++|+|.|+||+++..|++ +++||+++++++..+..
T Consensus       296 ~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  296 EATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             hccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC
Confidence                   11233347799999999999954 5778999999999999999999999999999 99999999999999985


Q ss_pred             CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       300 ~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                        |+.-|+++.|+.+..++++|+-|.++++|.-
T Consensus       375 --h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  375 --HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             --CcceeEEEecCCCCceEEeccccceeeeeec
Confidence              7789999999999999999999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-31  Score=238.39  Aligned_cols=282  Identities=16%  Similarity=0.230  Sum_probs=235.4

Q ss_pred             CCCCCCccccCCCCCCeEEEEE-cCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650           72 PLPSPAESTSSSPPPTLLHISF-NQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (403)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~~i~~-s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~  149 (403)
                      .++....+.+.|..+.|..|.| .|+.++||+++... +|+|++.+..+.   .+. +|...|.++....++.++++++.
T Consensus       310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~-GH~e~vlSL~~~~~g~llat~sK  385 (775)
T KOG0319|consen  310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIP-GHTEAVLSLDVWSSGDLLATGSK  385 (775)
T ss_pred             ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEe-CchhheeeeeecccCcEEEEecC
Confidence            3444555677888899999999 67889999998665 999988776654   344 89999999997677799999999


Q ss_pred             CCCCCCceEEEEECCCCc----eeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCcee---------eeEee
Q 015650          150 DPQYPLNKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKL---------LHQIE  211 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~---------~~~~~  211 (403)
                      |     +++++|.++++.    ++.... |...|.+++++..+. +++   .|.++++|++...+.         .....
T Consensus       386 D-----~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~  460 (775)
T KOG0319|consen  386 D-----KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER  460 (775)
T ss_pred             C-----ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence            9     999999885543    233344 899999999977654 333   599999999976211         11234


Q ss_pred             ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (403)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (403)
                      .|...|.+++++|+..  ++++ |+.|.+.+||+++... ..++.+|...|.|+.|+|..+.++++|.|++ |+||.+.+
T Consensus       461 aHdKdIN~Vaia~ndk--LiAT-~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~  536 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDK--LIAT-GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSIST  536 (775)
T ss_pred             hhcccccceEecCCCc--eEEe-cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEecc
Confidence            6888999999999876  4554 7799999999999744 4678899999999999999999999999999 99999999


Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeee
Q 015650          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSE  370 (403)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (403)
                      ..++++|.+  |...|..+.|-.+|+.|++++.||.|++|++++++.+.                               
T Consensus       537 fSClkT~eG--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~-------------------------------  583 (775)
T KOG0319|consen  537 FSCLKTFEG--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM-------------------------------  583 (775)
T ss_pred             ceeeeeecC--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh-------------------------------
Confidence            999999997  78999999999999999999999999999999999643                               


Q ss_pred             eeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          371 WSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       371 ~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                          .+..|++.|++++-++++..+++|+.||.
T Consensus       584 ----tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~  612 (775)
T KOG0319|consen  584 ----TLDAHNDRVWALSVSPLLDMFVTGGGDGR  612 (775)
T ss_pred             ----hhhhccceeEEEeecCccceeEecCCCeE
Confidence                35667889999999999999999999984

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.5e-33  Score=227.04  Aligned_cols=231  Identities=15%  Similarity=0.310  Sum_probs=194.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      .....|.|+.+  |...+++|. |++|+|||.++....  +.+. +|...|.++.|...  .+++|+.|     .+|++|
T Consensus       195 e~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~--~~L~-GHtGSVLCLqyd~r--viisGSSD-----sTvrvW  262 (499)
T KOG0281|consen  195 ENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECL--KILT-GHTGSVLCLQYDER--VIVSGSSD-----STVRVW  262 (499)
T ss_pred             ccCCceEEEEe--cchhhhcccccCceEEeccccHHHH--Hhhh-cCCCcEEeeeccce--EEEecCCC-----ceEEEE
Confidence            35568999998  445778887 788999998776655  6676 89999999998654  88999999     999999


Q ss_pred             ECCCCceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCce---eeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      |+++|+++.++- |.+.|..+.|+..-.... -|.+|.+||+....   +.+.+.+|...+..+.|+..    +++++ +
T Consensus       263 Dv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k----yIVsA-S  337 (499)
T KOG0281|consen  263 DVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVSA-S  337 (499)
T ss_pred             eccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc----eEEEe-c
Confidence            999999999988 899999999987554444 48999999997643   34556788888887777543    45543 4


Q ss_pred             ccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (403)
Q Consensus       237 ~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~  315 (403)
                      .|.+|++|++.+.. ++++.+|...|.|+.+  .|+++++|+.|.+ |++||+..|.+++.+++  |+.-|.++.|  |.
T Consensus       338 gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeLvRciRF--d~  410 (499)
T KOG0281|consen  338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--DN  410 (499)
T ss_pred             CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHhhhheee--cC
Confidence            79999999999954 6778999999999998  8899999999999 99999999999999997  7889999999  67


Q ss_pred             CEEEEEeCCCcEEEEEeecCCC
Q 015650          316 QWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       316 ~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      +.+++|+.||+|++||+..+..
T Consensus       411 krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  411 KRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             ceeeeccccceEEEEecccccC
Confidence            8999999999999999998874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.8e-33  Score=230.28  Aligned_cols=245  Identities=14%  Similarity=0.189  Sum_probs=215.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      .+...|...|.++.|+++|.++++|+.++ |++|+..-.. +  +.+..+|...|.+++|+++...++++++|     |+
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V--k~~~ahh~eaIRdlafSpnDskF~t~SdD-----g~  203 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V--KIIQAHHAEAIRDLAFSPNDSKFLTCSDD-----GT  203 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h--HHhhHhhhhhhheeccCCCCceeEEecCC-----Ce
Confidence            56788999999999999999999999777 9999965332 2  34444677999999999999999999999     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      |+|||....+....+. |.-.|.++.|+|...++++   |+.|++||.++++++.++..|...|..+.|.++++  ++++
T Consensus       204 ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N--~Llt  281 (464)
T KOG0284|consen  204 IKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN--WLLT  281 (464)
T ss_pred             EEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC--eeEE
Confidence            9999999888888888 8999999999999888883   78999999999999999999999999999999985  4554


Q ss_pred             eCCccCeEEEEEccC-CceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEe
Q 015650          234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (403)
                       ++.|..++++|+++ +++..+++|+..+.++.|+| ...+|.+|+.||. |..|.+...+++..+.. +|...|++++|
T Consensus       282 -~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~-AHd~~iwsl~~  358 (464)
T KOG0284|consen  282 -GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPP-AHDGEIWSLAY  358 (464)
T ss_pred             -ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCc-ccccceeeeec
Confidence             45999999999995 77888999999999999999 5678899999999 99999986777766664 48899999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          312 SSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       312 s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +|-|.+|++|+.|.++++|.-....
T Consensus       359 hPlGhil~tgsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  359 HPLGHILATGSNDRTVRFWTRNRPG  383 (464)
T ss_pred             cccceeEeecCCCcceeeeccCCCC
Confidence            9999999999999999999765443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.5e-30  Score=214.37  Aligned_cols=245  Identities=17%  Similarity=0.222  Sum_probs=206.2

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ..-.+.+|.+.|+++.|+.||.+||+|+ ++.|+||...++....  .+. .....+.-+.|+|....++.|+.|     
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~-~e~~dieWl~WHp~a~illAG~~D-----  169 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLD-QEVEDIEWLKWHPRAHILLAGSTD-----  169 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE--Eee-cccCceEEEEecccccEEEeecCC-----
Confidence            3456889999999999999999999999 5559999998887663  343 356678889999999999999999     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCC-Cc-------------
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-PK-------------  217 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-~~-------------  217 (403)
                      |.+.+|.+.++...+.+. |..++++-.|.|+|+.++   .||+|++||+.+++++..+....+ ..             
T Consensus       170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~  249 (399)
T KOG0296|consen  170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT  249 (399)
T ss_pred             CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence            999999999987777887 999999999999999888   599999999999988777652110 00             


Q ss_pred             -------------------------------------eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCc
Q 015650          218 -------------------------------------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR  260 (403)
Q Consensus       218 -------------------------------------~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~  260 (403)
                                                           .++.+.|....+-+++.|+-||+|.|||+....++.+..|...
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~  329 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG  329 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence                                                 0011112122233444577899999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       261 i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      |..+.|-+ ..+|++++.+|. |+.||.++|+++.++.+  |...|.+++++|+++++++++.|++.+||++.
T Consensus       330 V~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  330 VTKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999998 789999999999 99999999999999997  77999999999999999999999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6e-32  Score=211.88  Aligned_cols=275  Identities=15%  Similarity=0.173  Sum_probs=233.6

Q ss_pred             cccCCCCCCeEEEEEcC---CCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQ---DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~---d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      .+..+|+.+|..++|+|   +|-+|++++.++ -.+-+-+++.-+  .++. +|...|+....+.+....+++..|    
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--gtfe-ghkgavw~~~l~~na~~aasaaad----   80 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--GTFE-GHKGAVWSATLNKNATRAASAAAD----   80 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--Eeee-ccCcceeeeecCchhhhhhhhccc----
Confidence            46789999999999975   888999998544 555555565544  7887 899999999999999999999988    


Q ss_pred             CceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe---cCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                       -+-++||.-+|..+..|+|..-|..++|+.|..+++.   +.-+++||++.. .+..++.+|.+.|..+.|....+. +
T Consensus        81 -ftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~-i  158 (334)
T KOG0278|consen   81 -FTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC-I  158 (334)
T ss_pred             -chhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCce-E
Confidence             8999999999999999999999999999999998884   667999999874 456778899999999988876654 3


Q ss_pred             EEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      +.+  ..|++|++||.+++....-.....+|+++.++++|++|.++. .+. |++||..+..+++.++   -+..|.+..
T Consensus       159 LSS--add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gss-V~Fwdaksf~~lKs~k---~P~nV~SAS  231 (334)
T KOG0278|consen  159 LSS--ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSS-VKFWDAKSFGLLKSYK---MPCNVESAS  231 (334)
T ss_pred             Eee--ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-Cce-eEEeccccccceeecc---Ccccccccc
Confidence            332  589999999999977666556678899999999999886654 445 9999999999999888   457899999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~  390 (403)
                      ++|+...+++|++|..++.||+.+++....                                  ..++|-++|.+|.|+|
T Consensus       232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~----------------------------------~nkgh~gpVhcVrFSP  277 (334)
T KOG0278|consen  232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGS----------------------------------YNKGHFGPVHCVRFSP  277 (334)
T ss_pred             ccCCCceEEecCcceEEEEEeccCCceeee----------------------------------cccCCCCceEEEEECC
Confidence            999999999999999999999999985211                                  1477889999999999


Q ss_pred             CCCEEEEEccCCC
Q 015650          391 QKNTVVILGMDGR  403 (403)
Q Consensus       391 d~~~l~~~~~dG~  403 (403)
                      ||...++|++|||
T Consensus       278 dGE~yAsGSEDGT  290 (334)
T KOG0278|consen  278 DGELYASGSEDGT  290 (334)
T ss_pred             CCceeeccCCCce
Confidence            9999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-29  Score=218.64  Aligned_cols=298  Identities=16%  Similarity=0.206  Sum_probs=231.0

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee
Q 015650           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~  169 (403)
                      -|.-.|.|..++....+.|.+-+++.....  ..+. .|...++-..|+|.+.++++++..     |+|+|||....+.+
T Consensus        23 ~ig~dpkgd~ilY~nGksv~ir~i~~~~~~--~iYt-EH~~~vtVAkySPsG~yiASGD~s-----G~vRIWdtt~~~hi   94 (603)
T KOG0318|consen   23 IIGGDPKGDNILYTNGKSVIIRNIDNPASV--DIYT-EHAHQVTVAKYSPSGFYIASGDVS-----GKVRIWDTTQKEHI   94 (603)
T ss_pred             EeccCCCCCeEEEeCCCEEEEEECCCccce--eeec-cccceeEEEEeCCCceEEeecCCc-----CcEEEEeccCccee
Confidence            355678888888887777888888776654  3443 688889999999999999999998     99999998765443


Q ss_pred             E--EEe-cCCceeEEEEecCceEEE--ecC-----eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC
Q 015650          170 G--ELS-FRSEVRSVKLRRDRIIVV--LEQ-----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (403)
Q Consensus       170 ~--~~~-~~~~i~~~~~~~~~~~~~--~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (403)
                      .  +++ ..++|.+++|+.|++.++  .+|     .+.+||  +|..+-++.+|...+..+.|.|.....+ ++ +++|+
T Consensus        95 LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi-~T-~sdDn  170 (603)
T KOG0318|consen   95 LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRI-AT-GSDDN  170 (603)
T ss_pred             eeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEE-Ee-ccCCC
Confidence            3  344 789999999999998887  333     466776  6778888999999999999999876544 33 56999


Q ss_pred             eEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe-cCCCcccEEEEEeCCCCCE
Q 015650          240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNAQW  317 (403)
Q Consensus       240 ~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~s~d~~~  317 (403)
                      .|.+|+-.- +-...+..|..-|.|+.|+|||.++++.+.||+ |.+||-.+++.+..+. ..+|.+.|.+|+|+||++.
T Consensus       171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~  249 (603)
T KOG0318|consen  171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ  249 (603)
T ss_pred             eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCccEEEEecCCCCccccEEEEEECCCCce
Confidence            999998544 333456678999999999999999999999999 9999999999999998 3458899999999999999


Q ss_pred             EEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccc-----c----cccccceee--eeeeeEEEEEeCCCceEE
Q 015650          318 LAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF-----I----KGVLPKYFS--SEWSVAQFRLVEGSPYIV  386 (403)
Q Consensus       318 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~  386 (403)
                      |++++.|.+++|||+.+.+.+.+..-.+..+  +..-+.-+     +    .+.+ .++.  ..-....+.+|...|+++
T Consensus       250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~--dqqvG~lWqkd~lItVSl~G~i-n~ln~~d~~~~~~i~GHnK~ITaL  326 (603)
T KOG0318|consen  250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVE--DQQVGCLWQKDHLITVSLSGTI-NYLNPSDPSVLKVISGHNKSITAL  326 (603)
T ss_pred             EEEecCCceEEEEEeeccceEEEeecCCchh--ceEEEEEEeCCeEEEEEcCcEE-EEecccCCChhheecccccceeEE
Confidence            9999999999999999998766654221100  00000000     0    0111 0111  001244578999999999


Q ss_pred             EeccCCCEEEEEccCCC
Q 015650          387 AFGHQKNTVVILGMDGR  403 (403)
Q Consensus       387 ~fs~d~~~l~~~~~dG~  403 (403)
                      +.++|+++|++|+.||.
T Consensus       327 tv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  327 TVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             EEcCCCCEEEeeccCce
Confidence            99999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=7.4e-31  Score=238.52  Aligned_cols=272  Identities=17%  Similarity=0.231  Sum_probs=230.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      +...+.+|-.++|+|...++.++--.| |++||..-+..+  ..|. .|..+|..+.|++...++++|++|     ..|+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFd-eHdGpVRgv~FH~~qplFVSGGDD-----ykIk   76 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFD-EHDGPVRGVDFHPTQPLFVSGGDD-----YKIK   76 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhh-ccCCccceeeecCCCCeEEecCCc-----cEEE
Confidence            445567899999999999999998555 999998866554  6676 899999999999999999999999     9999


Q ss_pred             EEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      +|+.++.+++.++. |-..|..+.|++.--+++   -|.+|+||+..+.+++..+.+|.+.+.+..|+|..+  ++++ +
T Consensus        77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED--lIVS-a  153 (1202)
T KOG0292|consen   77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED--LIVS-A  153 (1202)
T ss_pred             EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc--eEEE-e
Confidence            99999999999988 999999999999998888   378999999999999999999999999999999776  3333 5


Q ss_pred             CccCeEEEEEccCCc------------------------------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          236 LQKGQVRVEHYASKR------------------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~------------------------------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      +-|.+|+|||+..-+                              ...+.+|...|+-++|+|.-.+|++|+.|.. |++
T Consensus       154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKl  232 (1202)
T KOG0292|consen  154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKL  232 (1202)
T ss_pred             cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeE
Confidence            689999999986510                              1346789999999999999999999999999 999


Q ss_pred             EEcCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccc
Q 015650          286 FNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (403)
Q Consensus       286 wd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (403)
                      |.+...+.  +.+.++  |.+.|.++-|+|...++++.++|++|+|||++..+.                          
T Consensus       233 WrmnetKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~--------------------------  284 (1202)
T KOG0292|consen  233 WRMNETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS--------------------------  284 (1202)
T ss_pred             EEeccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEecccccc--------------------------
Confidence            99875543  334444  778999999999999999999999999999999885                          


Q ss_pred             cceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                               +.+++-..++.++++-+|..|.++.|=..
T Consensus       285 ---------v~tfrrendRFW~laahP~lNLfAAgHDs  313 (1202)
T KOG0292|consen  285 ---------VQTFRRENDRFWILAAHPELNLFAAGHDS  313 (1202)
T ss_pred             ---------eeeeeccCCeEEEEEecCCcceeeeecCC
Confidence                     33455556777888888888866665433

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.2e-28  Score=198.52  Aligned_cols=273  Identities=15%  Similarity=0.227  Sum_probs=209.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeee--CCeEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~~~~  155 (403)
                      +.+..-.+.|+++.|+++|.+|++++ |+.++|||...++..  +++. .+...+-.+.|.  ++.....+...|     
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~--~ti~-skkyG~~~~~Fth~~~~~i~sStk~d-----   79 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV--KTIN-SKKYGVDLACFTHHSNTVIHSSTKED-----   79 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee--eEee-cccccccEEEEecCCceEEEccCCCC-----
Confidence            44555678899999999999999977 567999999888766  5554 344455555553  344434444345     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      .+|+..++.+.+.++-|. |...|..++.+|-+..++   .|++|++||++..++...+....  -.++++.|.|-  ++
T Consensus        80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GL--if  155 (311)
T KOG1446|consen   80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGL--IF  155 (311)
T ss_pred             CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCc--EE
Confidence            899999999999999999 999999999999666555   59999999999877776665433  35677777654  55


Q ss_pred             EeeCCccCeEEEEEccC---CceeEEe---ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650          232 VCPGLQKGQVRVEHYAS---KRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~---~~~~~~~---~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      |. +...+.|++||++.   +....+.   +.....+.|.|+|||++|+.+...+. +++.|.-+|..+.++........
T Consensus       156 A~-~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  156 AL-ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             EE-ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCC
Confidence            54 33445999999987   4444443   34667899999999999999999998 99999999999999887543332


Q ss_pred             -EEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE-eCCCc
Q 015650          306 -IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSP  383 (403)
Q Consensus       306 -v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  383 (403)
                       -.+..|+||++++++|+.||+|++|++++++.                                   +..+++ +.+++
T Consensus       234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~-----------------------------------v~~~~~~~~~~~  278 (311)
T KOG1446|consen  234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK-----------------------------------VAVLRGPNGGPV  278 (311)
T ss_pred             cceeEEECCCCcEEEEecCCCcEEEEEcCCCcE-----------------------------------eeEecCCCCCCc
Confidence             25778999999999999999999999999885                                   333444 35678


Q ss_pred             eEEEeccCCCEEEEEcc
Q 015650          384 YIVAFGHQKNTVVILGM  400 (403)
Q Consensus       384 ~~~~fs~d~~~l~~~~~  400 (403)
                      .++.|.|..-.+++++.
T Consensus       279 ~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  279 SCVRFNPRYAMFVSASS  295 (311)
T ss_pred             cccccCCceeeeeecCc
Confidence            88888888887777764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=4.7e-30  Score=206.36  Aligned_cols=236  Identities=13%  Similarity=0.184  Sum_probs=203.0

Q ss_pred             cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC-CceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEE
Q 015650          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYN  200 (403)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d  200 (403)
                      .+|...|..+.|+|++.++++++.|     ..|.+|++.. -+....++ |.+.|..+.|.+|+..++   .|.+|+.||
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~D-----r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSD-----RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCc-----ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            3899999999999999999999999     9999999543 35556666 999999999999999888   599999999


Q ss_pred             cCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC
Q 015650          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (403)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg  280 (403)
                      .++|++++.+++|..-+..+.  |...+..++++|+.|+++++||++.+...........++++.|..++..+.+|+-|+
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             cccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            999999999999998888777  555666778889999999999999877666666677899999999999999999999


Q ss_pred             cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccc
Q 015650          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK  360 (403)
Q Consensus       281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (403)
                      . |++||++....+..+.+  |...|+.|..+++|.++.+-+.|.++++||++-.-+-                      
T Consensus       197 ~-ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~----------------------  251 (338)
T KOG0265|consen  197 D-IKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS----------------------  251 (338)
T ss_pred             c-eeeeccccCcceEEeec--ccCceeeEEeccCCCccccccccceEEEEEecccCCC----------------------
Confidence            9 99999999999999997  6789999999999999999999999999999876641                      


Q ss_pred             ccccceeeeeeeeEEEEEe----CCCceEEEeccCCCEEEEEccCC
Q 015650          361 GVLPKYFSSEWSVAQFRLV----EGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                               .+++..++++    +.....++|||++..+..|+.|.
T Consensus       252 ---------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr  288 (338)
T KOG0265|consen  252 ---------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR  288 (338)
T ss_pred             ---------CceEEEeecchhhhhhhcceeeccCCCCccccccccc
Confidence                     2223323333    23455689999999999999885

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=214.97  Aligned_cols=271  Identities=17%  Similarity=0.209  Sum_probs=221.2

Q ss_pred             CCCCeEEEEEcCCCCE-EEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           84 PPPTLLHISFNQDHGC-FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~-l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      ..+.|.+++|+|...+ +|+.+.-.+.||+..+....  +.+. .-...+.+..|..||..++.|+..     |.|+|||
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~--k~~s-rFk~~v~s~~fR~DG~LlaaGD~s-----G~V~vfD   96 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR--KTFS-RFKDVVYSVDFRSDGRLLAAGDES-----GHVKVFD   96 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhhh--hhHH-hhccceeEEEeecCCeEEEccCCc-----CcEEEec
Confidence            3467999999996644 77777888999997655433  3343 355789999999999999999998     9999999


Q ss_pred             CCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       163 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      +++...++.+. |..++..+.|+|+...++    -|+.+++||+.+......+.+|.+.+.+.+++|..+++++  +|+.
T Consensus        97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv--tGsY  174 (487)
T KOG0310|consen   97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV--TGSY  174 (487)
T ss_pred             cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE--ecCC
Confidence            87777778887 999999999999765555    2678999999998876688999999999999998886533  4779


Q ss_pred             cCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 015650          238 KGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (403)
Q Consensus       238 d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  316 (403)
                      ||.|++||.+.. ....-..|..+|..+.+-|.|..+++++.+.  |+|||+.+|..+..... .|...|+|+.+..++.
T Consensus       175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~--vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNS--VKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDST  251 (487)
T ss_pred             CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCe--EEEEEecCCceehhhhh-cccceEEEEEeecCCc
Confidence            999999999986 4444557999999999999999999988664  99999986554433332 2778999999999999


Q ss_pred             EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEE
Q 015650          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV  396 (403)
Q Consensus       317 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~  396 (403)
                      .|++++-|+.|++||+.+-+.                                   +..++. .++|..++.+||++.++
T Consensus       252 rLlS~sLD~~VKVfd~t~~Kv-----------------------------------v~s~~~-~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  252 RLLSGSLDRHVKVFDTTNYKV-----------------------------------VHSWKY-PGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             eEeecccccceEEEEccceEE-----------------------------------EEeeec-ccceeeEEecCCCceEE
Confidence            999999999999999877662                                   111222 45888999999999999


Q ss_pred             EEccCCC
Q 015650          397 ILGMDGR  403 (403)
Q Consensus       397 ~~~~dG~  403 (403)
                      +|-.||.
T Consensus       296 iGmsnGl  302 (487)
T KOG0310|consen  296 IGMSNGL  302 (487)
T ss_pred             Eecccce
Confidence            9999983

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.8e-29  Score=225.92  Aligned_cols=273  Identities=14%  Similarity=0.175  Sum_probs=235.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      -...+|...|.+++++.|...+++|..+.++||+.++.++.  +++.   ...+.+..|-|...+++.|...     |.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kci--RTi~---~~y~l~~~Fvpgd~~Iv~G~k~-----Gel  436 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCI--RTIT---CGYILASKFVPGDRYIVLGTKN-----GEL  436 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCccee--EEec---cccEEEEEecCCCceEEEeccC-----Cce
Confidence            45789999999999999999999999899999999988877  6664   2378888999999999999988     999


Q ss_pred             EEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCC-----ceee--------eEeeccCCCceeEE
Q 015650          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD-----LKLL--------HQIETIANPKGLCA  221 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~-----~~~~--------~~~~~~~~~~~~~~  221 (403)
                      .+||+.....+.+++ |.+.|..++..||+..++   .|.+|++||+.-     +...        +++ .....+.++.
T Consensus       437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~  515 (888)
T KOG0306|consen  437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVS  515 (888)
T ss_pred             EEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEE
Confidence            999999999998888 999999999999988777   599999999752     1111        112 2345677888


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (403)
                      ++||+..  ++. +--|.+++||-+++-+ ...+.+|.-+|.||.++||+++++||+.|.+ |+||-+.=|.|-+.+-. 
T Consensus       516 ~Spdgk~--LaV-sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA-  590 (888)
T KOG0306|consen  516 VSPDGKL--LAV-SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA-  590 (888)
T ss_pred             EcCCCcE--EEE-EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc-
Confidence            9998874  443 4589999999999844 5668999999999999999999999999999 99999999999998886 


Q ss_pred             CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC
Q 015650          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (403)
Q Consensus       301 ~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (403)
                       |...|.++.|-|+...+.+++.|+.|+-||-+..+.                                   +..+.+|.
T Consensus       591 -HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~-----------------------------------iq~L~~H~  634 (888)
T KOG0306|consen  591 -HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE-----------------------------------IQKLDGHH  634 (888)
T ss_pred             -ccCceeEEEEcccceeEEEecCcceEEeechhhhhh-----------------------------------heeeccch
Confidence             778999999999999999999999999999988875                                   44466777


Q ss_pred             CCceEEEeccCCCEEEEEccCCC
Q 015650          381 GSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       381 ~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ..+++++.+|+|.++++++.|.+
T Consensus       635 ~ev~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  635 SEVWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             heeeeeEEcCCCCeEEeccCCce
Confidence            88999999999999999999864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3.3e-29  Score=230.70  Aligned_cols=243  Identities=19%  Similarity=0.301  Sum_probs=207.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|...|+.++|+||++++++++++ +|+|||+... ....+.+. +|...+.+++|++++..+++++.|     ++
T Consensus       197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D-----~t  269 (456)
T KOG0266|consen  197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDD-----GT  269 (456)
T ss_pred             ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEec-CCCCceEEEEecCCCCEEEEecCC-----Cc
Confidence            4458899999999999999999999855 5999999333 23337787 899999999999999999999999     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCce--eeeEeeccCCC--ceeEEEeeCCCeE
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--LLHQIETIANP--KGLCAVSQGVGSL  229 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~  229 (403)
                      |+|||+++++++..+. |...|.+++|++++.+++   .|+.|++||+.++.  ++..+..+...  +..+.++|+++.+
T Consensus       270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l  349 (456)
T KOG0266|consen  270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL  349 (456)
T ss_pred             EEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence            9999999999999999 999999999999999998   49999999999998  55666655554  8899999998865


Q ss_pred             EEEeeCCccCeEEEEEccC-CceeEEeecCCc---eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650          230 VLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSR---IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~---i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      +.+   ..|+.+++||++. .....+.+|...   +.+..+++.+.++++|+.|+. |++||+.++..+..+.++. ...
T Consensus       350 l~~---~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~h~-~~~  424 (456)
T KOG0266|consen  350 LSA---SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEGHS-KAA  424 (456)
T ss_pred             EEe---cCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcCCC-CCc
Confidence            554   3889999999997 445667777664   444556789999999999999 9999999999888888732 788


Q ss_pred             EEEEEeCCCCCEEEEEe--CCCcEEEEEee
Q 015650          306 IYSLAFSSNAQWLAVSS--DKGTVHVFNLK  333 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~--~dg~v~iwd~~  333 (403)
                      +..+.++|...++++++  .|+.+++|..+
T Consensus       425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999999998  79999999764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.9e-29  Score=225.54  Aligned_cols=246  Identities=17%  Similarity=0.281  Sum_probs=194.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCC----------------------------ee-E---------
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF----------------------------RE-I---------  119 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~----------------------------~~-~---------  119 (403)
                      .+...|.+.|++|.|++||+|||+|+.++ |+||.+...                            .. .         
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            34448999999999999999999999666 999987440                            00 0         


Q ss_pred             --------------------EEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCcee
Q 015650          120 --------------------FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR  179 (403)
Q Consensus       120 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~  179 (403)
                                          ....+ .+|...|.++.|+.++. |.+++.|     .+|++|++...++++.|.|..-|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~f-LLSSSMD-----KTVRLWh~~~~~CL~~F~HndfVT  413 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNNF-LLSSSMD-----KTVRLWHPGRKECLKVFSHNDFVT  413 (712)
T ss_pred             cccCCccccCCCccccccccchhhh-hccchhheecccccCCe-eEecccc-----ccEEeecCCCcceeeEEecCCeeE
Confidence                                00111 58999999999998875 5566677     999999999999999999999999


Q ss_pred             EEEEec-CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE--
Q 015650          180 SVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--  253 (403)
Q Consensus       180 ~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~--  253 (403)
                      ||+|+| |.++++   .|+.|+||++...+.+.-. ....-|+.+++.|+|+..++   |+.+|.+++|+....++..  
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEee
Confidence            999999 566666   5999999999876655443 34578999999999986555   4589999999998855432  


Q ss_pred             -Eeec------CCceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          254 -IMAH------DSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       254 -~~~~------~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                       +..|      ...|+.+.|.|.. ..+++.+.|.. |+|+|.++..++..|++......-....|+.||++|+++++|.
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence             1111      2279999999743 34666788998 9999999999999998754444556788999999999999999


Q ss_pred             cEEEEEeecCC
Q 015650          326 TVHVFNLKVNS  336 (403)
Q Consensus       326 ~v~iwd~~~~~  336 (403)
                      .|+||+++...
T Consensus       569 ~VYiW~~~~~~  579 (712)
T KOG0283|consen  569 WVYIWKNDSFN  579 (712)
T ss_pred             eEEEEeCCCCc
Confidence            99999985443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8e-29  Score=217.48  Aligned_cols=257  Identities=15%  Similarity=0.212  Sum_probs=221.9

Q ss_pred             CCCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650           70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (403)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (403)
                      .+.++....+.+.-...+|.+..|-....++++|+|+. ||||+.++.+++  ..|+ .|...|.+++.+|...++.+++
T Consensus        40 WnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV--~~Fe-AH~DyIR~iavHPt~P~vLtsS  116 (794)
T KOG0276|consen   40 WNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV--KTFE-AHSDYIRSIAVHPTLPYVLTSS  116 (794)
T ss_pred             EecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee--EEee-ccccceeeeeecCCCCeEEecC
Confidence            34445455566666778899999999999999999877 999999999887  7787 8999999999999999999999


Q ss_pred             CCCCCCCceEEEEECCCC-ceeEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEE
Q 015650          149 PDPQYPLNKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  222 (403)
                      +|     -.|++||.+.+ .+.++++ |..-|.+++|+|. ...++   .|++|++|.+....+..++++|...+.++.+
T Consensus       117 DD-----m~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdy  191 (794)
T KOG0276|consen  117 DD-----MTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDY  191 (794)
T ss_pred             Cc-----cEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEe
Confidence            99     99999999876 6778888 9999999999994 44444   5999999999999999999999999999999


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (403)
                      -+.++.-++++ |..|..|+|||..++ +++++.+|...|..+.|+|.-.++++|++||+ |+||+..+-+...++.-  
T Consensus       192 y~~gdkpylIs-gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~--  267 (794)
T KOG0276|consen  192 YTGGDKPYLIS-GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNY--  267 (794)
T ss_pred             ccCCCcceEEe-cCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhc--
Confidence            99999988887 669999999999994 56789999999999999999999999999999 99999988888777765  


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      .-+.|++|+-.+.+..++.|.++|.| +..+-..++..
T Consensus       268 gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgreeP~v  304 (794)
T KOG0276|consen  268 GLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREEPAV  304 (794)
T ss_pred             CCceEEEEeecCCCCeEEEeccCCcE-EEEccCCCCce
Confidence            34789999999998999999877765 44555555433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=9e-30  Score=212.98  Aligned_cols=276  Identities=14%  Similarity=0.186  Sum_probs=227.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+..|.+.+..+.|-++...|++|+ |..|++|++...+..+..++. +....+.++.|.+++..+++.+.|     +.
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d-----~~  242 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASND-----KN  242 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCC-----Cc
Confidence            56778999999999999988999887 666999999877765667776 778899999999999999999998     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      +++|++...+...++. |.+.|+++.|......++   .|.+|++||+....+.+++-. ...+..++.+.     ....
T Consensus       243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~~-----~~~~  316 (459)
T KOG0288|consen  243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCSI-----SDVI  316 (459)
T ss_pred             eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEecc-----eeee
Confidence            9999999999999999 999999999988766455   589999999999888777643 22334444442     2344


Q ss_pred             eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC--CcccEEEEEe
Q 015650          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAF  311 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~  311 (403)
                      +|..|+.|++||.+.........-.+.|+++..+++|..|.+++.|.+ +.+.|+++.+....+....  .....+.+.|
T Consensus       317 SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvf  395 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVF  395 (459)
T ss_pred             ecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEE
Confidence            577999999999998766555555569999999999999999999999 9999999998888776422  2235889999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC--CceEEEec
Q 015650          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG--SPYIVAFG  389 (403)
Q Consensus       312 s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fs  389 (403)
                      ||++.|+++|+.||.|+||++.+++.+..                                   ++....  .+++++|.
T Consensus       396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~-----------------------------------l~~s~s~~aI~s~~W~  440 (459)
T KOG0288|consen  396 SPDGSYVAAGSADGSVYIWSVFTGKLEKV-----------------------------------LSLSTSNAAITSLSWN  440 (459)
T ss_pred             CCCCceeeeccCCCcEEEEEccCceEEEE-----------------------------------eccCCCCcceEEEEEc
Confidence            99999999999999999999999985322                                   222222  59999999


Q ss_pred             cCCCEEEEEccCC
Q 015650          390 HQKNTVVILGMDG  402 (403)
Q Consensus       390 ~d~~~l~~~~~dG  402 (403)
                      |-|..|++++.++
T Consensus       441 ~sG~~Llsadk~~  453 (459)
T KOG0288|consen  441 PSGSGLLSADKQK  453 (459)
T ss_pred             CCCchhhcccCCc
Confidence            9999999988765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.5e-28  Score=211.14  Aligned_cols=278  Identities=14%  Similarity=0.194  Sum_probs=204.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEE--EecccCcceeEEEEeeeCC--eEEEeeCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCN--ILALVGGGPDPQY  153 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~  153 (403)
                      ..+.+|+..|+++++.|.|..|++|+ |..|++||+........  +.+.......|.++.|++.  .++++++.     
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~-----  235 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS-----  235 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-----
Confidence            45778889999999999999999999 77799999975543221  2333234445666777664  44555555     


Q ss_pred             CCceEEEEECCCCceeEEE-------------e-cCCceeEEEEecCceE--EE--ecCeEEEEEcCCc-eeeeEeec--
Q 015650          154 PLNKVMIWDDHQSRCIGEL-------------S-FRSEVRSVKLRRDRII--VV--LEQKIFVYNFADL-KLLHQIET--  212 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~-------------~-~~~~i~~~~~~~~~~~--~~--~d~~i~i~d~~~~-~~~~~~~~--  212 (403)
                        ...+|+| +.|..+.++             + |...+++.+|+|+.+-  +.  .||+++|||+... +.++.++.  
T Consensus       236 --aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  236 --AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             --cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence              5789998 444322221             1 6667899999997553  33  5999999999764 33344432  


Q ss_pred             ---cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc----eeEEeecCC--ceEEEEEcCCCCEEEEEeCCCcEE
Q 015650          213 ---IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS--RIACFALTQDGQLLATSSTKGTLV  283 (403)
Q Consensus       213 ---~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~----~~~~~~~~~--~i~~~~~sp~g~~l~s~~~dg~~i  283 (403)
                         ..-++..|+|++++..  +| +|..||.|.+|+....-    ...-.+|..  .|+||.||+||++|++-+.|++ +
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~--iA-agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-L  388 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKL--IA-AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-L  388 (641)
T ss_pred             CCCcccCceeeecCCCcch--hh-hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-e
Confidence               2345678999999874  44 36799999999986632    334567877  8999999999999999999999 9


Q ss_pred             EEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEe------CCCcEEEEEeecCCCCCCCCCCCCCCCCCccccc
Q 015650          284 RIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (403)
Q Consensus       284 ~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (403)
                      ++||++.. +++....+-...-+-+.++|||+.++|++|.      ..|.+++||..+.+.                   
T Consensus       389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~-------------------  449 (641)
T KOG0772|consen  389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT-------------------  449 (641)
T ss_pred             eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee-------------------
Confidence            99999875 4555544433344678899999999999986      356799999888774                   


Q ss_pred             ccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                      +.++.....+|..+.|+|.-|.|++|+.||+
T Consensus       450 ----------------v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~  480 (641)
T KOG0772|consen  450 ----------------VYKIDISTASVVRCLWHPKLNQIFAGSGDGT  480 (641)
T ss_pred             ----------------EEEecCCCceEEEEeecchhhheeeecCCCc
Confidence                            3345555678888999999999999999995

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.4e-28  Score=220.04  Aligned_cols=252  Identities=17%  Similarity=0.270  Sum_probs=214.1

Q ss_pred             CCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650           71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (403)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~  149 (403)
                      +........-|.+|.++|..+.|+|.+.++++|+|+. |+||+....+++  .++. +|-..|..+.|++..-+++++++
T Consensus        37 DYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl--ftL~-GHlDYVRt~~FHheyPWIlSASD  113 (1202)
T KOG0292|consen   37 DYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL--FTLL-GHLDYVRTVFFHHEYPWILSASD  113 (1202)
T ss_pred             hhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh--hhhc-cccceeEEeeccCCCceEEEccC
Confidence            3344444467899999999999999999999999776 999999877766  6676 89999999999999999999999


Q ss_pred             CCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCce--------------------
Q 015650          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--------------------  205 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~--------------------  205 (403)
                      |     .+|+||+..+++++..+. |...|.|..|+|...+++   .|.+|++||+...+                    
T Consensus       114 D-----QTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~  188 (1202)
T KOG0292|consen  114 D-----QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS  188 (1202)
T ss_pred             C-----CeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence            9     999999999999999999 999999999999776666   49999999986311                    


Q ss_pred             ---------eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc---eeEEeecCCceEEEEEcCCCCEE
Q 015650          206 ---------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLL  273 (403)
Q Consensus       206 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~---~~~~~~~~~~i~~~~~sp~g~~l  273 (403)
                               ..+.+++|...+.-++|+|.-.  +++ +|+.|..|++|.+...+   +.+..+|.+.|.++-|+|...++
T Consensus       189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lI  265 (1202)
T KOG0292|consen  189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLI  265 (1202)
T ss_pred             hhcCCcCeeeeeeecccccccceEEecCCcc--eEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcccee
Confidence                     1234577888888899988654  444 47799999999988744   45567999999999999999999


Q ss_pred             EEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          274 ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       274 ~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ++.++|++ |+|||+...+.+++++.  .....+.++-+|..+++++|- |+-+.+|.++...+
T Consensus       266 lSnsEDks-irVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAAgH-DsGm~VFkleRErp  325 (1202)
T KOG0292|consen  266 LSNSEDKS-IRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERP  325 (1202)
T ss_pred             EecCCCcc-EEEEecccccceeeeec--cCCeEEEEEecCCcceeeeec-CCceEEEEEcccCc
Confidence            99999999 99999999999999986  457899999999999887764 66688999886554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.1e-27  Score=209.18  Aligned_cols=239  Identities=21%  Similarity=0.344  Sum_probs=204.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      .....|...+..+.|++++++|++++ ++.|++|++...+..  ..+. .+...+.++.|.+++..+++++.+     +.
T Consensus        45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~  116 (289)
T cd00200          45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV--RTLT-GHTSYVSSVAFSPDGRILSSSSRD-----KT  116 (289)
T ss_pred             EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce--EEEe-ccCCcEEEEEEcCCCCEEEEecCC-----Ce
Confidence            45567888899999999999998888 555999999876544  3444 577789999999988888888877     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--e-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      |++||+.+++.+..+. |...+.++.|+|++.+++  . ++.|++||+++++.+..+..+...+..+.++++++.++++ 
T Consensus       117 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  195 (289)
T cd00200         117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS-  195 (289)
T ss_pred             EEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEe-
Confidence            9999999888888888 888999999999887777  3 8999999999888888888888889999999988655443 


Q ss_pred             eCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          234 PGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                       + .++.|++||++.... ..+..|...+.++.|+|++.++++++.++. |++||+.+++.+..+..  |...|.+++|+
T Consensus       196 -~-~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~  270 (289)
T cd00200         196 -S-SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWS  270 (289)
T ss_pred             -c-CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEEC
Confidence             3 589999999987544 445588889999999999999988888999 99999999988888874  66789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEE
Q 015650          313 SNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd  331 (403)
                      +++++|++++.||.|++|+
T Consensus       271 ~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         271 PDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCCEEEEecCCCeEEecC
Confidence            9999999999999999996

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.7e-28  Score=195.98  Aligned_cols=285  Identities=17%  Similarity=0.177  Sum_probs=208.6

Q ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEeccc-CcceeEEEEeeeCCeEEEe-eCC
Q 015650           72 PLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFER-GGGIGVVEMLFRCNILALV-GGG  148 (403)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~-s~~  148 (403)
                      ...+.....+.+|...|++++|+.||++||++++ +.|+||+++.......+.+.. -.....+.+.|.||...++ +..
T Consensus        73 f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~  152 (420)
T KOG2096|consen   73 FVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK  152 (420)
T ss_pred             cccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence            3444555789999999999999999999999985 459999997654332222210 1122456778888865433 333


Q ss_pred             CCCCCCCceEEEEECCCC---ceeE--------EEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeec
Q 015650          149 PDPQYPLNKVMIWDDHQS---RCIG--------ELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET  212 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~---~~~~--------~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~  212 (403)
                      +.     .++++|.+...   ....        .+.  |.-.+..+-....+.+++   .|..|.+|+++ |+.+..+..
T Consensus       153 ~g-----~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt  226 (420)
T KOG2096|consen  153 RG-----NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT  226 (420)
T ss_pred             cC-----CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence            44     78999976432   1111        122  556677788888888888   48899999998 999999988


Q ss_pred             cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC---------CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEE
Q 015650          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (403)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~---------~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i  283 (403)
                      .....+..+++|+|+  +++++| --..|++|..--         .+...+.+|...|..++|+++...+++.+.||+ +
T Consensus       227 nq~~n~~aavSP~GR--Fia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-w  302 (420)
T KOG2096|consen  227 NQSSNYDAAVSPDGR--FIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-W  302 (420)
T ss_pred             ccccccceeeCCCCc--EEEEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-E
Confidence            877888899999988  555555 567899998643         334568899999999999999999999999999 9


Q ss_pred             EEEEcCC-------CcEEEEEecC--CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650          284 RIFNTLD-------GTLLQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (403)
Q Consensus       284 ~iwd~~~-------~~~~~~~~~~--~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (403)
                      +|||+.-       .+.+++....  .-.+.-..++.+|.|+.||.+. ...|++|..++++.++.+             
T Consensus       303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~-------------  368 (420)
T KOG2096|consen  303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL-------------  368 (420)
T ss_pred             EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH-------------
Confidence            9999742       2222222111  1123344899999999998764 557999999998864443             


Q ss_pred             ccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                                           -+.|++.+++++|+++|++++++++.
T Consensus       369 ---------------------e~~h~~~Is~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  369 ---------------------EDIHSTTISSISYSSDGKYIATCGDR  394 (420)
T ss_pred             ---------------------HHhhcCceeeEEecCCCcEEeeecce
Confidence                                 25678899999999999999998863

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.7e-28  Score=191.35  Aligned_cols=238  Identities=18%  Similarity=0.255  Sum_probs=197.6

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      .-.+|+..|.+++|+|.|++||+++ |.++.||.-...+-.+...++ +|...|-+++|+.++.+|+++++|     +.|
T Consensus        56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRD-----KSV  129 (312)
T KOG0645|consen   56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRD-----KSV  129 (312)
T ss_pred             ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCC-----CeE
Confidence            3457999999999999999999999 777999997766666678887 999999999999999999999999     999


Q ss_pred             EEEECCCC---ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcC---CceeeeEeeccCCCceeEEEeeCCCe
Q 015650          159 MIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       159 ~iwd~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      .||.+..+   +++..++ |...|..+.|+|..-+|+   .|++|++|+-.   ..++++++.+|...+.+++|.+.+..
T Consensus       130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r  209 (312)
T KOG0645|consen  130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR  209 (312)
T ss_pred             EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce
Confidence            99998754   5667777 999999999999877777   59999999876   24789999999999999999999876


Q ss_pred             EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC------cEEEEEecCCC
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------TLLQEVRRGAD  302 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~------~~~~~~~~~~~  302 (403)
                      +..+   ++|++++||.....   .-..|...++.+.|.  ...|++++.|+. |++|.-...      +.+.... +.|
T Consensus       210 l~s~---sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~-i~lf~~s~~~d~p~~~l~~~~~-~aH  279 (312)
T KOG0645|consen  210 LVSC---SDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDA-IRLFKESDSPDEPSWNLLAKKE-GAH  279 (312)
T ss_pred             EEEe---cCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCE-EEEEEecCCCCCchHHHHHhhh-ccc
Confidence            4433   58999999986622   123477889999998  447999999999 999975532      1222222 347


Q ss_pred             cccEEEEEeCCC-CCEEEEEeCCCcEEEEEee
Q 015650          303 RAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       303 ~~~v~~l~~s~d-~~~l~s~~~dg~v~iwd~~  333 (403)
                      ...|++++|.|. ..+|++|++||.|++|.+.
T Consensus       280 e~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  280 EVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            789999999995 6789999999999999885

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.7e-29  Score=202.85  Aligned_cols=280  Identities=14%  Similarity=0.236  Sum_probs=231.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecc-----cCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (403)
                      .+--+..+.+-|..|+|||++|++|+-+| |.+|+..+++......++     --+...|.++.|+.|...+++|+.|  
T Consensus       207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD--  284 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD--  284 (508)
T ss_pred             heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC--
Confidence            44455667788999999999999999666 999999776543111111     1356789999999999999999999  


Q ss_pred             CCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          153 YPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                         |.|++|.+++|.+++.|.  |...|+++.|+.|+..+.   .|.++++.-+..|++++++++|...+....|.++|.
T Consensus       285 ---GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~  361 (508)
T KOG0275|consen  285 ---GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH  361 (508)
T ss_pred             ---CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC
Confidence               999999999999999998  999999999999988777   589999999999999999999999999999999998


Q ss_pred             eEEEEeeCCccCeEEEEEccCCce-eEEe--ecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-C
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRT-KFIM--AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-D  302 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~-~~~~--~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-~  302 (403)
                      .++.+   +.||+|++|+..+..+ .+++  +...+|.++-.-| +...++.+...++ |+|.++ .|+.++.+..+. .
T Consensus       362 ~iisa---SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkRE  436 (508)
T KOG0275|consen  362 HIISA---SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKRE  436 (508)
T ss_pred             eEEEe---cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCcc
Confidence            76544   4799999999988543 3443  3456788887777 4567888888888 999997 688888887543 2


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCC
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS  382 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (403)
                      .+...+...||.|.++.+.++|+.++.|.+.+++.++                                   .+..|+..
T Consensus       437 gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~-----------------------------------tl~VhEkd  481 (508)
T KOG0275|consen  437 GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER-----------------------------------TLPVHEKD  481 (508)
T ss_pred             CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee-----------------------------------eeeccccc
Confidence            2456677899999999999999999999999998532                                   24566777


Q ss_pred             ceEEEeccCCCEEEEEccCCC
Q 015650          383 PYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       383 ~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      +-.++-+|..+.|++=++||.
T Consensus       482 vIGl~HHPHqNllAsYsEDgl  502 (508)
T KOG0275|consen  482 VIGLTHHPHQNLLASYSEDGL  502 (508)
T ss_pred             ccccccCcccchhhhhcccch
Confidence            888999999999999999984

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=1.3e-28  Score=202.56  Aligned_cols=205  Identities=15%  Similarity=0.195  Sum_probs=185.1

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEE
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIF  197 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~  197 (403)
                      +.+. +|...|.++++.|...++++++.|     ++|+|||+.+|++..++. |...|..+++++-..|++   .|+.|+
T Consensus       145 rVi~-gHlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  145 RVIS-GHLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             hhhh-hccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            4444 899999999999999999999999     999999999999999999 999999999999988888   489999


Q ss_pred             EEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEE
Q 015650          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATS  276 (403)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~  276 (403)
                      .||++..+.++.+.+|-..+.++.++|.-+  .+++ |+.|..++|||++++ .+..+.+|..+|..+.+.|-...+++|
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTld--vl~t-~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLD--VLVT-GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccce--eEEe-cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            999999999999999999999999998766  3444 458999999999994 567889999999999999977789999


Q ss_pred             eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       277 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      +.|++ |++||+..|+...++..  |...|.+++.+|....+|+++.|. |+-|++..++-..
T Consensus       296 S~D~t-vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~  354 (460)
T KOG0285|consen  296 SHDST-VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQ  354 (460)
T ss_pred             cCCce-EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhh
Confidence            99999 99999999999888885  778999999999999999998874 9999999988543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.8e-28  Score=219.16  Aligned_cols=246  Identities=11%  Similarity=0.178  Sum_probs=208.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee--EEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP  154 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~  154 (403)
                      .+..+|++.|.++....+|-+|++|+ |+.+++|.++.+..  .+.... .+|...|.+++++.. ..++++++.|    
T Consensus       359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D----  433 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQD----  433 (775)
T ss_pred             EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCC----
Confidence            58899999999999777889999999 66799999844332  222333 378889999888654 4578899999    


Q ss_pred             CceEEEEECCCCc-----eeE--EE---ecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEE
Q 015650          155 LNKVMIWDDHQSR-----CIG--EL---SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA  221 (403)
Q Consensus       155 ~~~i~iwd~~~~~-----~~~--~~---~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  221 (403)
                       +++++|++...+     .+.  .+   .|...|++++++|+..+++   .|.+.+||+++..+...++.+|...+.++.
T Consensus       434 -~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~  512 (775)
T KOG0319|consen  434 -CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS  512 (775)
T ss_pred             -ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEE
Confidence             999999987622     111  11   1899999999999999999   499999999999999999999999999999


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (403)
                      |++.+.  ++++ .+.|++|+||.+.+ ..++++.+|...|..+.|-.+|+.|++++.||- |++|++++++|+.++.. 
T Consensus       513 Fs~~dq--~laT-~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~tlD~-  587 (775)
T KOG0319|consen  513 FSKNDQ--LLAT-CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMTLDA-  587 (775)
T ss_pred             eccccc--eeEe-ccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhhhhh-
Confidence            999865  3443 34799999999998 557889999999999999999999999999999 99999999999999996 


Q ss_pred             CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       301 ~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                       |...|++++-++....+++|+.||.|.+|.=.+.+
T Consensus       588 -H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  588 -HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             -ccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence             78999999999999999999999999999754443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.7e-29  Score=207.10  Aligned_cols=236  Identities=13%  Similarity=0.273  Sum_probs=193.0

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      .-..++.+|++.|.|+.|  +.+.+++|+ |.+|+|||+++++.+  .++- +|...|..+.|+.+  ++++++.|    
T Consensus       228 ~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l--~tli-hHceaVLhlrf~ng--~mvtcSkD----  296 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL--NTLI-HHCEAVLHLRFSNG--YMVTCSKD----  296 (499)
T ss_pred             HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh--hHHh-hhcceeEEEEEeCC--EEEEecCC----
Confidence            334789999999999998  456899998 666999999998876  6665 79999999999866  57788888    


Q ss_pred             CceEEEEECCCCcee---EEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          155 LNKVMIWDDHQSRCI---GELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~---~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                       .++.+||+.....+   +.+. |...|+.+.|+..  +++   .|.+|++|++.+++.++++.+|...+.++.+.  ++
T Consensus       297 -rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~r  371 (499)
T KOG0281|consen  297 -RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DR  371 (499)
T ss_pred             -ceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--Ce
Confidence             99999998776432   3334 8889999999765  555   58999999999999999999998877666543  22


Q ss_pred             eEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE---------EEEE
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL---------LQEV  297 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~---------~~~~  297 (403)
                        ++ .+|+.|.+|++||+..+. ++.+++|+.-|.|+.|  |.+.+++|+.||+ |+|||+..+..         +.++
T Consensus       372 --lv-VSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~l  445 (499)
T KOG0281|consen  372 --LV-VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTL  445 (499)
T ss_pred             --EE-EecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce-EEEEecccccCCcccccchHHHhh
Confidence              34 458899999999999855 5678999999999999  6788999999999 99999987543         3333


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       298 ~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ..  |.+.|..++|  |...+++++.|.+|.|||+..+-+
T Consensus       446 v~--hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  446 VE--HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             hh--ccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence            32  7789999999  667899999999999999988764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.9e-28  Score=190.97  Aligned_cols=269  Identities=17%  Similarity=0.176  Sum_probs=203.7

Q ss_pred             eEEEEEcC--CCCEE-EEEc------CCcEEEEEcC-CCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCCCCc
Q 015650           88 LLHISFNQ--DHGCF-AAGT------DHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLN  156 (403)
Q Consensus        88 i~~i~~s~--d~~~l-~~~~------~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~  156 (403)
                      =.++.|||  ++++. |++.      .+.+.|.++. .........+.  -...+..++|+++. ..++++..|     |
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~GD-----G   83 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD--TEDGLFDVAWSENHENQVIAASGD-----G   83 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee--cccceeEeeecCCCcceEEEEecC-----c
Confidence            35788998  34443 3322      2338888885 33333334554  66788899998752 334445555     9


Q ss_pred             eEEEEECCC-CceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          157 KVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       157 ~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      +++|||+.. ..++..++ |...|.++.|++..+..+    .|++|++|+...++.++++.+|...|....|+|...+++
T Consensus        84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf  163 (311)
T KOG0277|consen   84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF  163 (311)
T ss_pred             eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence            999999643 35777887 999999999998644333    599999999999999999999999999999999988876


Q ss_pred             EEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCc-EEEEEecCCCcccEE
Q 015650          231 LVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIY  307 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~  307 (403)
                      ..+  +.|+.+++||++. ++...+..|...|.|+.|+. +.+.|++|+.|+. |++||+++.+ ++.++.+  |.-.|+
T Consensus       164 as~--Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVR  238 (311)
T KOG0277|consen  164 ASA--SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVR  238 (311)
T ss_pred             EEc--cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEE
Confidence            655  4699999999987 66666999999999999997 6678899999999 9999998754 5666654  778999


Q ss_pred             EEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEE
Q 015650          308 SLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (403)
Q Consensus       308 ~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (403)
                      .+.|||.. ..|++++.|-+++|||...+....                                  .+...|.+-+..+
T Consensus       239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~----------------------------------e~~~~HtEFv~g~  284 (311)
T KOG0277|consen  239 KVKFSPHHASLLASASYDMTVRIWDPERQDSAI----------------------------------ETVDHHTEFVCGL  284 (311)
T ss_pred             EEecCcchhhHhhhccccceEEecccccchhhh----------------------------------hhhhccceEEecc
Confidence            99999965 478999999999999999766311                                  1123444555667


Q ss_pred             Eecc-CCCEEEEEccCC
Q 015650          387 AFGH-QKNTVVILGMDG  402 (403)
Q Consensus       387 ~fs~-d~~~l~~~~~dG  402 (403)
                      .||+ ++.++|..+.|+
T Consensus       285 Dws~~~~~~vAs~gWDe  301 (311)
T KOG0277|consen  285 DWSLFDPGQVASTGWDE  301 (311)
T ss_pred             ccccccCceeeeccccc
Confidence            7766 567777777775

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.2e-28  Score=212.66  Aligned_cols=243  Identities=14%  Similarity=0.180  Sum_probs=211.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      ..+.+.|+++.|+++|.+||+|..++ |.|||....+..  ..+..+|...|-+++|.  ...+.+|+.+     +.|..
T Consensus       214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW~--~~~lssGsr~-----~~I~~  284 (484)
T KOG0305|consen  214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGSHASRVGSLAWN--SSVLSSGSRD-----GKILN  284 (484)
T ss_pred             ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--ccccCCcCceeEEEecc--CceEEEecCC-----CcEEE
Confidence            33488999999999999999999666 999999877666  56653489999999998  5567788888     99999


Q ss_pred             EECCCCceeEE-Ee-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          161 WDDHQSRCIGE-LS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       161 wd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      +|++..+.... +. |...|..+.|++|+.+++   .|+.+.|||....+.+..+..|...+..++|+|...+++....|
T Consensus       285 ~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG  364 (484)
T KOG0305|consen  285 HDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG  364 (484)
T ss_pred             EEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence            99998876555 55 999999999999999999   48999999998888899999999999999999999887766678


Q ss_pred             CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEE--eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS--STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      ..|+.|++||..++.......-...|.+|.|++..+-|+++  ..++. |.||+..+.+.+..+.+  |...|..++++|
T Consensus       365 s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SP  441 (484)
T KOG0305|consen  365 SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSP  441 (484)
T ss_pred             CcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECC
Confidence            89999999999988776666678889999999998777654  34556 99999999999988886  778999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecCC
Q 015650          314 NAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ||..+++|+.|.++++|++-...
T Consensus       442 dg~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  442 DGETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             CCCEEEEecccCcEEeccccCCC
Confidence            99999999999999999997754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-28  Score=204.70  Aligned_cols=243  Identities=18%  Similarity=0.285  Sum_probs=195.1

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ..++.+|..+|..+.||||.++|++++ +..+++||+.++...  ..+..++...+.+++|.||+..+++|+.|     +
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r  334 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGSPD-----R  334 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecCCC-----C
Confidence            578899999999999999999988776 666999999988766  45554567889999999999999999999     9


Q ss_pred             eEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      .+..||+. |..+...+  ....|.+++..+||+++.   .|..|++|+.++......+ ....++..++++.+++..++
T Consensus       335 ~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~Lv  412 (519)
T KOG0293|consen  335 TIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALV  412 (519)
T ss_pred             cEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEE
Confidence            99999965 44444444  346799999999999887   5999999998875554433 34567888999988774433


Q ss_pred             EeeCCccCeEEEEEccCCc-eeEEeecCCc--eEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSR--IACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~--i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      -   -.+..+++||+.... ++...+|...  +-.-+|-- +..++++|++|+. |+||+..+++++.++.+  |...|+
T Consensus       413 n---L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vN  486 (519)
T KOG0293|consen  413 N---LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVN  486 (519)
T ss_pred             E---cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--Ccceee
Confidence            3   478999999998633 4556677654  22224543 5579999999999 99999999999999997  778999


Q ss_pred             EEEeCCCC-CEEEEEeCCCcEEEEEeecC
Q 015650          308 SLAFSSNA-QWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       308 ~l~~s~d~-~~l~s~~~dg~v~iwd~~~~  335 (403)
                      +++|+|.. .++|++++||+|+||.....
T Consensus       487 cVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  487 CVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999965 47899999999999987754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=4e-27  Score=195.25  Aligned_cols=279  Identities=13%  Similarity=0.178  Sum_probs=217.6

Q ss_pred             CCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC---eEEEee
Q 015650           71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVG  146 (403)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s  146 (403)
                      .....++......|.+-|.++...  ++.+++|+ |+.++||+..... .  ..+. +|...+.++.+-..   ...+++
T Consensus        91 ~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~--~~~~-Ght~~ik~v~~v~~n~~~~~fvs  164 (423)
T KOG0313|consen   91 EAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-I--KTIV-GHTGPIKSVAWVIKNSSSCLFVS  164 (423)
T ss_pred             EecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-E--EEEe-cCCcceeeeEEEecCCccceEEE
Confidence            334444455566799999999887  77899988 5559999976433 2  4454 78888887776432   335889


Q ss_pred             CCCCCCCCCceEEEEECCCCceeEE----Ee-cCCceeEEEEecCceEEE---ecCeEEEEEcCC---------------
Q 015650          147 GGPDPQYPLNKVMIWDDHQSRCIGE----LS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD---------------  203 (403)
Q Consensus       147 ~~~d~~~~~~~i~iwd~~~~~~~~~----~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~---------------  203 (403)
                      ++.|     .++++|.++.++....    .. |...|.++...+++..++   .|.+|+||+..+               
T Consensus       165 as~D-----qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk  239 (423)
T KOG0313|consen  165 ASMD-----QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK  239 (423)
T ss_pred             ecCC-----ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh
Confidence            9998     9999999988754432    22 899999999999998888   599999999321               


Q ss_pred             ----------ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEE
Q 015650          204 ----------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL  273 (403)
Q Consensus       204 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l  273 (403)
                                ..++..+.+|..++..+.|++. .   .+++++.|.+|+.||+.++....-......+.|+..+|..++|
T Consensus       240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~-~---v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll  315 (423)
T KOG0313|consen  240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA-T---VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLL  315 (423)
T ss_pred             hhhhhhcccccCceEEecccccceeeEEEcCC-C---ceEeecccceEEEEEeecccceeeeecCcceeEeeccccccee
Confidence                      1245667889999999999883 3   2334569999999999997766655567789999999999999


Q ss_pred             EEEeCCCcEEEEEEcCCCc---EEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCC
Q 015650          274 ATSSTKGTLVRIFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP  349 (403)
Q Consensus       274 ~s~~~dg~~i~iwd~~~~~---~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  349 (403)
                      ++|+.|.. |++||-+++.   ....+.+  |.+.|.++.|+|... +|++++.|+++++||+++.+.            
T Consensus       316 ~~gssdr~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~------------  380 (423)
T KOG0313|consen  316 ASGSSDRH-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA------------  380 (423)
T ss_pred             eecCCCCc-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC------------
Confidence            99999999 9999988652   3345554  788999999999665 578999999999999999872            


Q ss_pred             CCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                                            .+..+..|.+.|.++.|. ++..|++|+.|.
T Consensus       381 ----------------------plydI~~h~DKvl~vdW~-~~~~IvSGGaD~  410 (423)
T KOG0313|consen  381 ----------------------PLYDIAGHNDKVLSVDWN-EGGLIVSGGADN  410 (423)
T ss_pred             ----------------------cceeeccCCceEEEEecc-CCceEEeccCcc
Confidence                                  134467778899889984 567899999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=210.24  Aligned_cols=238  Identities=11%  Similarity=0.176  Sum_probs=197.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCCCCc
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~  156 (403)
                      +++.+|..+|..++|+.+|..+.+++ |..|++||+++++..  ..+.  ....+.++.|.|+. ..++.|+.|     +
T Consensus       252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~--~~f~--~~~~~~cvkf~pd~~n~fl~G~sd-----~  322 (503)
T KOG0282|consen  252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL--SRFH--LDKVPTCVKFHPDNQNIFLVGGSD-----K  322 (503)
T ss_pred             hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE--EEEe--cCCCceeeecCCCCCcEEEEecCC-----C
Confidence            78999999999999999999888887 777999999999887  4554  44667788888876 666677777     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEE
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      .|+.||+++++.++++. |-+.|..+.|-++|..++   -|++++||+.+..-.++.+ ........++..+|.++  ++
T Consensus       323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~--~~  400 (503)
T KOG0282|consen  323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK--WF  400 (503)
T ss_pred             cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC--ee
Confidence            99999999999999998 899999999999998887   3889999999887665543 33344556788888877  45


Q ss_pred             EeeCCccCeEEEEEccC----CceeEEeecC--CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650          232 VCPGLQKGQVRVEHYAS----KRTKFIMAHD--SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~----~~~~~~~~~~--~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      ++ -+.|+.|.+|.+..    .+.+.+.+|.  +.-..+.|||||++|++|..||. +.+||.++.+++..++.  |...
T Consensus       401 ~a-Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~  476 (503)
T KOG0282|consen  401 AA-QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQP  476 (503)
T ss_pred             hh-hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcc
Confidence            54 44789999998654    3345567774  45667899999999999999999 99999999999999986  6789


Q ss_pred             EEEEEeCCCCC-EEEEEeCCCcEEEEE
Q 015650          306 IYSLAFSSNAQ-WLAVSSDKGTVHVFN  331 (403)
Q Consensus       306 v~~l~~s~d~~-~l~s~~~dg~v~iwd  331 (403)
                      +..+.|+|... .+|+++.||.|++|+
T Consensus       477 ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  477 CIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEEecCCCcceeEecccCceeEecC
Confidence            99999999654 789999999999996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=9.7e-27  Score=197.53  Aligned_cols=281  Identities=15%  Similarity=0.178  Sum_probs=225.1

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeE---EEE-----------ecc-cCcceeEEEEeeeCCe
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREI---FRR-----------DFE-RGGGIGVVEMLFRCNI  141 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~---~~~-----------~~~-~~~~~~v~~~~~~~~~  141 (403)
                      ......|.-.|.+++++||++++.+++.+ .|.=|++.++...   ...           ... ..|...+.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            35567899999999999999999999844 4988998766532   111           011 1677889999999999


Q ss_pred             EEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCce--EEE-ecCeEEEEEcCCceeeeEeeccCCCc
Q 015650          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI--IVV-LEQKIFVYNFADLKLLHQIETIANPK  217 (403)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~--~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~  217 (403)
                      .++++++.|     ..|.||+..+.+.++.+. |.+.|.+++|-....  +.+ .|.+|++|++.....+.++.+|...|
T Consensus       215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence            999999999     999999999999999998 999999999986543  333 69999999999988888998998877


Q ss_pred             eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      ..+....-..   +++.|..|+++++|++.......+.+|.+.+.|++|-.+ ..+++|+.+|. |.+|++...+++.+.
T Consensus       290 ~~IdaL~reR---~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  290 LGIDALSRER---CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTS  364 (479)
T ss_pred             eeechhcccc---eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEe
Confidence            7665554443   445577999999999987777888899999999999855 46889999999 999999999888776


Q ss_pred             ecCC----------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccccee
Q 015650          298 RRGA----------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (403)
Q Consensus       298 ~~~~----------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (403)
                      ....          ++..|++++..|...++++|+.+|.|++|.+..+-....                           
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~---------------------------  417 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN---------------------------  417 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc---------------------------
Confidence            6421          112789999999999999999999999999998842100                           


Q ss_pred             eeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650          368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                          .+..+. -.+-|+.++|+++|++|++|..
T Consensus       418 ----~l~~ls-~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  418 ----LLYSLS-LVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             ----eeeecc-cccEEEEEEEccCCCEEEEecc
Confidence                011122 2457888999999998888753

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.6e-27  Score=206.86  Aligned_cols=263  Identities=16%  Similarity=0.147  Sum_probs=219.0

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee
Q 015650           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~  169 (403)
                      -+.|+ ....||+|....|.+|+..++.......+   +...++++.|++++..|+.+..+     |.|.|||..+.+.+
T Consensus       182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF---GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKKT  252 (484)
T ss_pred             Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEec---CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcccc
Confidence            35666 45688999888899999887775433333   37899999999999999999998     99999999999888


Q ss_pred             EEEe--cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeE-eeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEE
Q 015650          170 GELS--FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (403)
Q Consensus       170 ~~~~--~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d  245 (403)
                      ..+.  |...|.+++|+....... -++.|..+|++..+.... +.+|...+..+.|++++.  ++++ |+.|+.+.|||
T Consensus       253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~--~lAS-GgnDN~~~Iwd  329 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN--QLAS-GGNDNVVFIWD  329 (484)
T ss_pred             ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC--eecc-CCCccceEecc
Confidence            8887  789999999994333333 589999999998765544 778899899999999887  5665 56999999999


Q ss_pred             ccC-CceeEEeecCCceEEEEEcC-CCCEEEEEe--CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650          246 YAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (403)
Q Consensus       246 ~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~  321 (403)
                      ... .....+..|...|.+++|+| ...+||+|+  .|+. |++||..+++.+..+.   ..+.|.+|.|++..+-|+++
T Consensus       330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vd---tgsQVcsL~Wsk~~kEi~st  405 (484)
T KOG0305|consen  330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVD---TGSQVCSLIWSKKYKELLST  405 (484)
T ss_pred             CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEecccc---cCCceeeEEEcCCCCEEEEe
Confidence            965 55677889999999999999 566888864  5888 9999999999999988   44789999999999777665


Q ss_pred             e--CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEc
Q 015650          322 S--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG  399 (403)
Q Consensus       322 ~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~  399 (403)
                      .  .++.|.||++.+.+.                                   +..+.+|...|..+++||||.+|++|+
T Consensus       406 hG~s~n~i~lw~~ps~~~-----------------------------------~~~l~gH~~RVl~la~SPdg~~i~t~a  450 (484)
T KOG0305|consen  406 HGYSENQITLWKYPSMKL-----------------------------------VAELLGHTSRVLYLALSPDGETIVTGA  450 (484)
T ss_pred             cCCCCCcEEEEeccccce-----------------------------------eeeecCCcceeEEEEECCCCCEEEEec
Confidence            3  677899999999774                                   444778888999999999999999999


Q ss_pred             cCCC
Q 015650          400 MDGR  403 (403)
Q Consensus       400 ~dG~  403 (403)
                      .|.|
T Consensus       451 ~DET  454 (484)
T KOG0305|consen  451 ADET  454 (484)
T ss_pred             ccCc
Confidence            9975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.9e-26  Score=185.86  Aligned_cols=274  Identities=14%  Similarity=0.156  Sum_probs=205.8

Q ss_pred             CccccCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      ..++.....+.|.+|+|||. ..++++|+ |++||+|++........+... .|..++.+++|+.++..+++++.|    
T Consensus        19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-~~~~PvL~v~WsddgskVf~g~~D----   93 (347)
T KOG0647|consen   19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-SHDGPVLDVCWSDDGSKVFSGGCD----   93 (347)
T ss_pred             ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-ccCCCeEEEEEccCCceEEeeccC----
Confidence            34555667889999999994 45555666 999999999764333223333 688999999999999999999999    


Q ss_pred             CceEEEEECCCCceeEEEecCCceeEEEEecCce--EEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI--IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                       +.+++||+.+++....-.|..+|..+.|-+...  +|+   .|.+|+.||++...++.++.. ...+++  ..-...-+
T Consensus        94 -k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa--~Dv~~pm~  169 (347)
T KOG0647|consen   94 -KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYA--ADVLYPMA  169 (347)
T ss_pred             -CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeee--hhccCcee
Confidence             999999999997666666999999999988665  555   599999999998888887754 233333  33333323


Q ss_pred             EEEeeCCccCeEEEEEccCCceeE--E-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC--cEEEEEecCCC--
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKF--I-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGAD--  302 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~--~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~--  302 (403)
                      .++   ..++.|.+|++++.....  + ..-+-.+.|++..+|....+.|+-+|. +.|..+..+  +.-.+|+.|..  
T Consensus       170 vVa---ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~  245 (347)
T KOG0647|consen  170 VVA---TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTN  245 (347)
T ss_pred             EEE---ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCC
Confidence            333   367899999998744322  1 224556889999998888899999999 999988876  44445665431  


Q ss_pred             -----cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEE
Q 015650          303 -----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR  377 (403)
Q Consensus       303 -----~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (403)
                           --.|++|+|+|....|++++.||+..+||-+....+.+                                   .+
T Consensus       246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~-----------------------------------s~  290 (347)
T KOG0647|consen  246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT-----------------------------------SE  290 (347)
T ss_pred             CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc-----------------------------------cC
Confidence                 12588999999999999999999999999887764322                                   23


Q ss_pred             EeCCCceEEEeccCCCEEEEE
Q 015650          378 LVEGSPYIVAFGHQKNTVVIL  398 (403)
Q Consensus       378 ~~~~~~~~~~fs~d~~~l~~~  398 (403)
                      .+..+|++++|+.+|+++|=+
T Consensus       291 ~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  291 THPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             cCCCccceeEecCCCCEEEEE
Confidence            345688899999999887643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=8e-27  Score=217.52  Aligned_cols=276  Identities=18%  Similarity=0.222  Sum_probs=219.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCe----------eEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR----------EIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~---~~~i~iw~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (403)
                      ..+...|.+|..+|||..+|+|+   |++++||+.+.--          .....+.. .|...+.++.|++|+.+|++|+
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEeecc
Confidence            33456799999999999999998   5668899875311          11112333 6889999999999999999999


Q ss_pred             CCCCCCCceEEEEECCC------------------CceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCcee
Q 015650          149 PDPQYPLNKVMIWDDHQ------------------SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL  206 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~------------------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~  206 (403)
                      +|     +.|.||+...                  .+.+..+. |...|.+++|+|++.+++   .|++|.+||.++.+.
T Consensus        89 DD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   89 DD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             Cc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee
Confidence            99     9999998762                  12455666 999999999999999999   599999999999999


Q ss_pred             eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeec------CCceEEEEEcCCCCEEEEEeC-
Q 015650          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH------DSRIACFALTQDGQLLATSST-  278 (403)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~------~~~i~~~~~sp~g~~l~s~~~-  278 (403)
                      +..+++|...+..+.|.|-|+  |+++.+ .|++|++|++.. +..+.+..+      ......+.|||||++|++... 
T Consensus       164 ~~vl~~H~s~VKGvs~DP~Gk--y~ASqs-dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIGK--YFASQS-DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             eeeeecccccccceEECCccC--eeeeec-CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence            999999999999999999988  566644 899999999665 333333332      345778999999999998543 


Q ss_pred             ---CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC-----CC------------EEEEEeCCCcEEEEEeecCCCC
Q 015650          279 ---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQ------------WLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       279 ---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d-----~~------------~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                         -.. +.|.+-.+.+.-..+.+  |.+++.+++|+|.     .+            .+|+|+.|++|-||.....+++
T Consensus       241 n~~~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  241 NGGKST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             cCCcce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence               224 88998877777777876  7789999999971     11            6789999999999999887753


Q ss_pred             CCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ...                                  ..+...+|..++|+|||-.|++++.||+
T Consensus       318 ~vi----------------------------------~~lf~~SI~DmsWspdG~~LfacS~DGt  348 (942)
T KOG0973|consen  318 FVI----------------------------------HNLFNKSIVDMSWSPDGFSLFACSLDGT  348 (942)
T ss_pred             hhh----------------------------------hhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence            211                                  2344568999999999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.7e-27  Score=183.53  Aligned_cols=203  Identities=16%  Similarity=0.188  Sum_probs=178.5

Q ss_pred             ecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEE
Q 015650          123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFV  198 (403)
Q Consensus       123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i  198 (403)
                      .+. .+...|..+.|+.++.+.++++.|     .+|++|+...|.+++++. |...|..++.+.|+..++   .|..+.+
T Consensus        12 ~l~-~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v   85 (307)
T KOG0316|consen   12 ILD-CAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV   85 (307)
T ss_pred             eec-ccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence            344 678899999999999999999999     999999999999999999 999999999999988888   5889999


Q ss_pred             EEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC---ceeEEeecCCceEEEEEcCCCCEEEE
Q 015650          199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLAT  275 (403)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~---~~~~~~~~~~~i~~~~~sp~g~~l~s  275 (403)
                      ||.++|+.++.+.+|...+..+.|+.+..  +++ +|+.|..+++||-+..   +++.+......|.++..  .+..|++
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~-SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIva  160 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNEESS--VVA-SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVA  160 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecCcce--EEE-eccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEe
Confidence            99999999999999999999999987765  344 5779999999999884   45556667788999988  5668999


Q ss_pred             EeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (403)
Q Consensus       276 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~  341 (403)
                      |+.||+ ++.||++.|+.....-+    .+|+++.|++|++.++.++.|++|++.|-++++.+..+
T Consensus       161 GS~DGt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  161 GSVDGT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY  221 (307)
T ss_pred             eccCCc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence            999999 99999999988665543    58999999999999999999999999999999964443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=5.6e-27  Score=201.02  Aligned_cols=273  Identities=12%  Similarity=0.149  Sum_probs=220.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe-eEEEEecc-cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR-EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      ...|.+-|.++.++...+.+.+|+.++|+|||+.... ......+. ......+.++...+|+..|+.|+..     .++
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----stl  489 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----STL  489 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----cee
Confidence            4568888999999999999999999999999995322 11112221 1355678889999999999999887     899


Q ss_pred             EEEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          159 MIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      .|||+....+....+   ..-...+++.+||.++.+   +||.|.|||+.+...++.|++|.+...++.++.++..++  
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW--  567 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW--  567 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee--
Confidence            999998765433333   234567889999998877   699999999999999999999999999999999998754  


Q ss_pred             eeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                      + |.-|.+|+.||++.++..........|.++..+|.+.+|+.|-.++. +.|......+. ..+.  .|++.|.++.|.
T Consensus       568 T-GGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp~k-yqlh--lheScVLSlKFa  642 (705)
T KOG0639|consen  568 T-GGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKPEK-YQLH--LHESCVLSLKFA  642 (705)
T ss_pred             c-CCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCccc-eeec--ccccEEEEEEec
Confidence            3 55899999999998765544455678999999999999999999998 88887543333 3333  488999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC-CCceEEEeccC
Q 015650          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQ  391 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fs~d  391 (403)
                      +-|+++++.+.|+.+..|...-+..+                                     ++..+ .+|.++..|-|
T Consensus       643 ~cGkwfvStGkDnlLnawrtPyGasi-------------------------------------FqskE~SsVlsCDIS~d  685 (705)
T KOG0639|consen  643 YCGKWFVSTGKDNLLNAWRTPYGASI-------------------------------------FQSKESSSVLSCDISFD  685 (705)
T ss_pred             ccCceeeecCchhhhhhccCccccce-------------------------------------eeccccCcceeeeeccC
Confidence            99999999999999999999888741                                     22223 57899999999


Q ss_pred             CCEEEEEccCC
Q 015650          392 KNTVVILGMDG  402 (403)
Q Consensus       392 ~~~l~~~~~dG  402 (403)
                      .++|++|+.|.
T Consensus       686 dkyIVTGSGdk  696 (705)
T KOG0639|consen  686 DKYIVTGSGDK  696 (705)
T ss_pred             ceEEEecCCCc
Confidence            99999999884

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=4e-26  Score=225.55  Aligned_cols=236  Identities=13%  Similarity=0.218  Sum_probs=192.8

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEE
Q 015650           84 PPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        84 ~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      +...|.+++|++. +.+|++++ |+.|+|||+.+.+..  ..+. +|...|.++.|++ ++..+++++.|     +.|++
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~--~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~i  602 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV--TEMK-EHEKRVWSIDYSSADPTLLASGSDD-----GSVKL  602 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE--EEec-CCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEE
Confidence            3467899999874 78888888 555999999877654  5565 7889999999986 77889999999     99999


Q ss_pred             EECCCCceeEEEecCCceeEEEEec-CceEEE---ecCeEEEEEcCCce-eeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          161 WDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       161 wd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      ||+.++..+..+.+...+.++.|++ ++.+++   .|+.|++||+++.+ .+..+.+|...+..+.|. ++.  ++++ +
T Consensus       603 Wd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~--~lvs-~  678 (793)
T PLN00181        603 WSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS--TLVS-S  678 (793)
T ss_pred             EECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC--EEEE-E
Confidence            9999999988888667899999964 677776   49999999998765 466777888889999886 444  3444 3


Q ss_pred             CccCeEEEEEccC-------CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec---------
Q 015650          236 LQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR---------  299 (403)
Q Consensus       236 ~~d~~i~v~d~~~-------~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~---------  299 (403)
                      +.|+.|++||++.       ..+..+.+|...+.+++|+|++.+|++|+.|+. |++|+......+..+..         
T Consensus       679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~  757 (793)
T PLN00181        679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGL  757 (793)
T ss_pred             ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCccccc
Confidence            4899999999874       345678899999999999999999999999999 99999876554432221         


Q ss_pred             --CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          300 --GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       300 --~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                        ..+...|.+++|+|++.+|++|+.||.|+||++
T Consensus       758 ~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        758 EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence              123457999999999999999999999999986

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.1e-26  Score=194.13  Aligned_cols=271  Identities=13%  Similarity=0.240  Sum_probs=223.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ...|.++...|....+.+|+.+ .+.++|...++.+  ..+. +|...|..+.++++...+++++.|     ..|+||..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--~~~~-Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vws~  290 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--ATLK-GHTKKITSVKFHKDLDTVITASAD-----EIIRVWSV  290 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh--hhcc-CcceEEEEEEeccchhheeecCCc-----ceEEeecc
Confidence            3578888888887888888855 7999998776655  6776 999999999999999999999998     99999998


Q ss_pred             CCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc--CCCceeEEEeeCCCeEEEEeeCCc
Q 015650          164 HQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       164 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      .......... |..+|+.+..+|.|.|++   .|++..+.|++++..+......  .-.+.+.+|+||+-  +++ +|..
T Consensus       291 ~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifg-tgt~  367 (506)
T KOG0289|consen  291 PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFG-TGTP  367 (506)
T ss_pred             ccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEe-ccCC
Confidence            8777666666 999999999999999998   4889999999999887766432  23466788888763  555 4889


Q ss_pred             cCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 015650          238 KGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (403)
Q Consensus       238 d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  316 (403)
                      |+.+++||+..+ ....+.+|.++|..++|+.+|-+|+++++|+. |++||++..+..+++... ....|.++.|.+.|+
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt  445 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGT  445 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCC
Confidence            999999999985 45668899999999999999999999999999 999999998888888754 334799999999999


Q ss_pred             EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeee-eEEEEEeCCCceEEEeccCCCEE
Q 015650          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS-VAQFRLVEGSPYIVAFGHQKNTV  395 (403)
Q Consensus       317 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~fs~d~~~l  395 (403)
                      +|+.++.|  |+||-+...+                                +.|. +.++..|.+..+++.|..+.+++
T Consensus       446 ~L~~~g~~--l~Vy~~~k~~--------------------------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l  491 (506)
T KOG0289|consen  446 YLGIAGSD--LQVYICKKKT--------------------------------KSWTEIKELADHSGLSTGVRFGEHAQYL  491 (506)
T ss_pred             eEEeecce--eEEEEEeccc--------------------------------ccceeeehhhhcccccceeeecccceEE
Confidence            99999666  5555555443                                2332 34466677888999999999999


Q ss_pred             EEEccCC
Q 015650          396 VILGMDG  402 (403)
Q Consensus       396 ~~~~~dG  402 (403)
                      ++++.|.
T Consensus       492 ~s~smd~  498 (506)
T KOG0289|consen  492 ASTSMDA  498 (506)
T ss_pred             eeccchh
Confidence            9999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.4e-28  Score=200.43  Aligned_cols=275  Identities=11%  Similarity=0.110  Sum_probs=220.2

Q ss_pred             cccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ..+.+|.+.|.|++=+|.. ..+++|+ |+.|+|||+....+.  ..+. .|...|..+++..  ..+++.++|     .
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~-AH~G~V~Gi~v~~--~~~~tvgdD-----K  129 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--RTFK-AHEGLVRGICVTQ--TSFFTVGDD-----K  129 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--heee-cccCceeeEEecc--cceEEecCC-----c
Confidence            4468999999999999987 7788988 666999999876655  6676 7888999999877  566777777     9


Q ss_pred             eEEEEECCCCceeEEEecCCceeEEEEecCceEEEe-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      +|+.|.+.- .++.++-....+..+.-+..+..+++ ...|.|||.....+++.+.-..+.+.++.++|....+ +++++
T Consensus       130 tvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI-Las~~  207 (433)
T KOG0268|consen  130 TVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI-LASCA  207 (433)
T ss_pred             ceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchh-eeeec
Confidence            999999654 57777777778888887777777775 4579999998888999998888888999999987654 45434


Q ss_pred             CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEeCCC
Q 015650          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSN  314 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~d  314 (403)
                       .|+.|.+||++.............-+.|+|+|.+-.+++|++|.. ++.||++..+ ++....+  |.+.|.++.|||.
T Consensus       208 -sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV~dVdfspt  283 (433)
T KOG0268|consen  208 -SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPT  283 (433)
T ss_pred             -cCCceEEEecccCCccceeeeeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeEEEeccCCC
Confidence             799999999999665443334445678999998888999999999 9999998754 4444554  7789999999999


Q ss_pred             CCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCE
Q 015650          315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT  394 (403)
Q Consensus       315 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~  394 (403)
                      |+-+++|+.|.+|+||.++.+..-..+                         .+       .+  -..|.+|.||.|.++
T Consensus       284 G~EfvsgsyDksIRIf~~~~~~SRdiY-------------------------ht-------kR--Mq~V~~Vk~S~Dsky  329 (433)
T KOG0268|consen  284 GQEFVSGSYDKSIRIFPVNHGHSRDIY-------------------------HT-------KR--MQHVFCVKYSMDSKY  329 (433)
T ss_pred             cchhccccccceEEEeecCCCcchhhh-------------------------hH-------hh--hheeeEEEEeccccE
Confidence            999999999999999999988742111                         00       01  136889999999999


Q ss_pred             EEEEccCCC
Q 015650          395 VVILGMDGR  403 (403)
Q Consensus       395 l~~~~~dG~  403 (403)
                      +++|+.||.
T Consensus       330 i~SGSdd~n  338 (433)
T KOG0268|consen  330 IISGSDDGN  338 (433)
T ss_pred             EEecCCCcc
Confidence            999999984

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=5.8e-28  Score=189.59  Aligned_cols=245  Identities=14%  Similarity=0.167  Sum_probs=207.7

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      -.-++.+|.+.|++..++.+....|++. |-+-+|||.-++..+  ..++  |.--|.+++|+.|...+++++.+     
T Consensus        51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel--hsf~--hkhivk~~af~~ds~~lltgg~e-----  121 (334)
T KOG0278|consen   51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL--HSFE--HKHIVKAVAFSQDSNYLLTGGQE-----  121 (334)
T ss_pred             cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--hhhh--hhheeeeEEecccchhhhccchH-----
Confidence            3478999999999999999888888887 556999999888776  6776  88889999999999999999998     


Q ss_pred             ceEEEEECCCCc-eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          156 NKVMIWDDHQSR-CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       156 ~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      ..++|||++..+ +..++. |.+.|..+.|....+.+.   .|++|++||.+++..++.+.. ..++..+.++++++.+.
T Consensus       122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilT  200 (334)
T KOG0278|consen  122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILT  200 (334)
T ss_pred             HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEE
Confidence            999999987764 455666 999999999987666555   489999999999999999864 67789999999998655


Q ss_pred             EEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      ++    ..+.|.+||...-.+..-..-...|.+..++|+...+++|++|.. ++.||..+++.+..+.. .|.++|.++.
T Consensus       201 ia----~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nk-gh~gpVhcVr  274 (334)
T KOG0278|consen  201 IA----YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNK-GHFGPVHCVR  274 (334)
T ss_pred             Ee----cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE-EEEEeccCCceeeeccc-CCCCceEEEE
Confidence            54    346899999887443333334566899999999999999999999 99999999999988632 2779999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          311 FSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |+|||..-++|++||+|+||....++.
T Consensus       275 FSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  275 FSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ECCCCceeeccCCCceEEEEEecCCCc
Confidence            999999999999999999999988774

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=185.92  Aligned_cols=243  Identities=14%  Similarity=0.242  Sum_probs=198.7

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE--EEeeCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQY  153 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~  153 (403)
                      +.-.+..|.+.|++++.  ++.++|+|+ |.+|+|||+....+.  ..+. .|...|+++.|.+...  .|+++..|   
T Consensus        35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql--g~ll-~HagsitaL~F~~~~S~shLlS~sdD---  106 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL--GILL-SHAGSITALKFYPPLSKSHLLSGSDD---  106 (362)
T ss_pred             ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh--ccee-ccccceEEEEecCCcchhheeeecCC---
Confidence            34557889999999998  588999998 677999999876655  4444 6899999999988765  78899998   


Q ss_pred             CCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                        |.|.+|+....+++..++ |...|+.++++|.+++..   .|+.+++||+-+|+.-..+.. ......+.|++.|+++
T Consensus       107 --G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  107 --GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHF  183 (362)
T ss_pred             --CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEE
Confidence              999999999999999999 999999999999999877   599999999998876555433 2333568999999976


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                      ++..    ...|-+|.+....+.........+.|+.|. ++.+|++|..|+. |.+||..+..++..+..  |...|-++
T Consensus       184 ~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i  255 (362)
T KOG0294|consen  184 VVSG----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDI  255 (362)
T ss_pred             EEEe----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeee
Confidence            6653    467899998885554333334567787775 6678899999999 99999999999888886  78999998


Q ss_pred             Ee--CCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          310 AF--SSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       310 ~~--s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      .+  .|++.+|++++.||.|+|||++.....
T Consensus       256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  256 ASYTNPEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             EEEecCCceEEEEeccCceEEEEEccccccC
Confidence            84  467889999999999999999987543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=8e-26  Score=182.89  Aligned_cols=267  Identities=15%  Similarity=0.187  Sum_probs=201.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      ....+.|+.|.|+|.+..|++++ |+.+++|++......  ..+.  |..++.+++|.++.. +++++-|     |.|+.
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~~--~~~plL~c~F~d~~~-~~~G~~d-----g~vr~   79 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKFK--HGAPLLDCAFADEST-IVTGGLD-----GQVRR   79 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hhee--cCCceeeeeccCCce-EEEeccC-----ceEEE
Confidence            34567899999998877666555 999999999877443  4554  889999999988554 5566666     99999


Q ss_pred             EECCCCceeEEEecCCceeEEEEecC-ceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          161 WDDHQSRCIGELSFRSEVRSVKLRRD-RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       161 wd~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      +|+.+++....-.|..+|.+|.+.+. +.++.  +|++|++||.+.......+....   ...+++-.++.+++++   .
T Consensus        80 ~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~~~v~g~~LvVg~---~  153 (323)
T KOG1036|consen   80 YDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYCMDVSGNRLVVGT---S  153 (323)
T ss_pred             EEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eEEEEeccCCEEEEee---c
Confidence            99999988777779999999999975 44444  69999999998755544443322   4556666677666544   7


Q ss_pred             cCeEEEEEccCCceeE---EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC----cEEEEEecCCC-------c
Q 015650          238 KGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRRGAD-------R  303 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~---~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~~~~-------~  303 (403)
                      +..+.+||+++.....   -..-+-.+.|+++-|++.=++.++-||. |.+=.+...    +....|+.|..       -
T Consensus       154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~  232 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII  232 (323)
T ss_pred             CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence            8999999999843322   2234567899999998888899999998 777555443    33344554311       1


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCc
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP  383 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (403)
                      -+|++|+|+|-.+.|+||+.||.|.+||+.+.+.+                                   .++..-+..|
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-----------------------------------~q~~~~~~SI  277 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL-----------------------------------KQLAKYETSI  277 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcchhhh-----------------------------------hhccCCCCce
Confidence            37999999999999999999999999999998852                                   2233335678


Q ss_pred             eEEEeccCCCEEEEEcc
Q 015650          384 YIVAFGHQKNTVVILGM  400 (403)
Q Consensus       384 ~~~~fs~d~~~l~~~~~  400 (403)
                      ..++|+.||..||+|+.
T Consensus       278 ~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  278 SSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEEEeccCCCeEEEEec
Confidence            89999999999999874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.6e-27  Score=185.56  Aligned_cols=237  Identities=15%  Similarity=0.179  Sum_probs=188.8

Q ss_pred             CCCCeEEEEEcCCC--CEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEE
Q 015650           84 PPPTLLHISFNQDH--GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        84 ~~~~i~~i~~s~d~--~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      -.+.+..++|+++.  ..+++.+|+.++|||+..... ....++ .|...|.++.|++ +...+++++-|     ++|++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD-----~TiKL  131 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFK-EHKREVYSVDWNTVRRRIFLTSSWD-----GTIKL  131 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHH-hhhhheEEeccccccceeEEeeccC-----CceEe
Confidence            45788999998864  344445577799999643333 335666 7999999999987 45556677888     99999


Q ss_pred             EECCCCceeEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          161 WDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       161 wd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      |+....+.++++. |...|....|+|. ..+++   .|+++++||++.......+..|...+.++.|+..... ++++ |
T Consensus       132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~T-g  209 (311)
T KOG0277|consen  132 WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLAT-G  209 (311)
T ss_pred             ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc-EEEe-c
Confidence            9999999999999 9999999999995 44444   5999999999874434448888888888888877665 3444 5


Q ss_pred             CccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEe
Q 015650          236 LQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAF  311 (403)
Q Consensus       236 ~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~  311 (403)
                      +.|+.|+.||++.  ..+..+.+|.-.|..++|||. ..+|++++.|-+ ++|||..... ++.+.. + |..-|..+.|
T Consensus       210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~-~-HtEFv~g~Dw  286 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVD-H-HTEFVCGLDW  286 (311)
T ss_pred             CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhh-c-cceEEecccc
Confidence            6999999999998  445677899999999999995 468899999999 9999988554 344444 2 7788999999


Q ss_pred             CC-CCCEEEEEeCCCcEEEEEe
Q 015650          312 SS-NAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       312 s~-d~~~l~s~~~dg~v~iwd~  332 (403)
                      ++ ++.++|+++.|+.++||+-
T Consensus       287 s~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  287 SLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccCceeeecccccceeeecc
Confidence            97 5679999999999999984

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2.8e-25  Score=203.91  Aligned_cols=243  Identities=12%  Similarity=0.102  Sum_probs=181.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEE-----------EecccCcceeEEEEeeeC-CeEEEeeCCCCC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFR-----------RDFERGGGIGVVEMLFRC-NILALVGGGPDP  151 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~  151 (403)
                      -..|.....++|+..++++..+. ...|+...+..++.           ..+. +|...|.++.|+| ++..+++++.| 
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~D-   97 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASED-   97 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCC-
Confidence            34455566666765555555444 55666443322110           1233 7889999999999 77889999999 


Q ss_pred             CCCCceEEEEECCCC-------ceeEEEe-cCCceeEEEEecCc-eEEE---ecCeEEEEEcCCceeeeEeeccCCCcee
Q 015650          152 QYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGL  219 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~-------~~~~~~~-~~~~i~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~  219 (403)
                          ++|++||+.++       +++..+. |...|.+++|+|++ .+++   .|++|++||+++++.+..+..|...+..
T Consensus        98 ----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~s  173 (493)
T PTZ00421         98 ----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITS  173 (493)
T ss_pred             ----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence                99999999765       2455666 89999999999975 4555   4999999999999999999889999999


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCc-eEEEEEcCCCCEEEEEe----CCCcEEEEEEcCCCc-
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR-IACFALTQDGQLLATSS----TKGTLVRIFNTLDGT-  292 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~-i~~~~~sp~g~~l~s~~----~dg~~i~iwd~~~~~-  292 (403)
                      ++|++++..  +++ ++.|+.|++||++++. +..+.+|.+. +..+.|.+++..|++++    .|+. |++||+++.. 
T Consensus       174 la~spdG~l--Lat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~~  249 (493)
T PTZ00421        174 LEWNLDGSL--LCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMAS  249 (493)
T ss_pred             EEEECCCCE--EEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCCC
Confidence            999998873  444 4589999999999855 4556778764 45678999888887654    4788 9999998765 


Q ss_pred             EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCCC
Q 015650          293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGS  338 (403)
Q Consensus       293 ~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~  338 (403)
                      ++.....+ ....+....|++++.+|++++ .|+.|++||+.+++..
T Consensus       250 p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        250 PYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             ceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            33333322 334667778999999999887 5999999999987743

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.1e-26  Score=211.60  Aligned_cols=239  Identities=19%  Similarity=0.301  Sum_probs=200.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      +...+.+..|.  ..++.+++ +..|++|+..++.... ..+. +|...|.++.+...+..+++++.|     .++++||
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~-GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvWd  277 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLV-GHFGGVWGLAFPSGGDKLVSGSTD-----KTERVWD  277 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEE-eecc-CCCCCceeEEEecCCCEEEEEecC-----CcEEeEe
Confidence            56788888888  44666666 5669999988776552 3376 899999999998777789999988     9999999


Q ss_pred             CCCCceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       163 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      ..+|++...+. |.+.|.++...+....-. .|.+|++|++.++..+..+.+|..+|.++.+.  ++  +++ +|+.|+.
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~--~lv-sgs~d~~  352 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP--LLV-SGSYDGT  352 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC--EEE-EEecCce
Confidence            99999999999 999999988866554443 69999999999999999999899999988887  33  333 3678999


Q ss_pred             EEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCCEE
Q 015650          241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWL  318 (403)
Q Consensus       241 i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l  318 (403)
                      |++||..+ +.+..+.+|...|.++.+.+. .++++|+.|++ |++||+++. +++.++..  |.+.+..+.+  .+++|
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~L  426 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNFL  426 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--cccee
Confidence            99999998 456778999999999988655 89999999999 999999999 99999986  6677766665  67899


Q ss_pred             EEEeCCCcEEEEEeecCCCCCCCC
Q 015650          319 AVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       319 ~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      ++++.|++|++||..+++....+.
T Consensus       427 vs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  427 VSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             EeccccccEEEeecccCceeeeec
Confidence            999999999999999999755443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.1e-24  Score=167.30  Aligned_cols=277  Identities=16%  Similarity=0.216  Sum_probs=213.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcC------CCe-------eEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCD------PFR-------EIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~------~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (403)
                      .....|.+++|+|.|.+.++|+.. +++|-...      ...       .++.+.- .+|...|.+.+|++.+..+++++
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~-khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN-KHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec-cccCccEEEEEecCccCeEEecC
Confidence            355689999999999999999854 47765431      110       1111222 37889999999999999999999


Q ss_pred             CCCCCCCceEEEEECCCCce-----eEEEe-cCCceeEEEEecC----ceEEE----ecCeEEEEEcCCceeeeEeeccC
Q 015650          149 PDPQYPLNKVMIWDDHQSRC-----IGELS-FRSEVRSVKLRRD----RIIVV----LEQKIFVYNFADLKLLHQIETIA  214 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~~-----~~~~~-~~~~i~~~~~~~~----~~~~~----~d~~i~i~d~~~~~~~~~~~~~~  214 (403)
                      .|     .+|++.-++...+     -.++. |.+.|..++|..+    +.+++    .|..|++-|..+|+..+.+.+|.
T Consensus       109 nd-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght  183 (350)
T KOG0641|consen  109 ND-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT  183 (350)
T ss_pred             CC-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence            99     9999987654332     23455 9999999999764    55666    37789999999999999999888


Q ss_pred             CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee-EEe--ec-----CCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM--AH-----DSRIACFALTQDGQLLATSSTKGTLVRIF  286 (403)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~~--~~-----~~~i~~~~~sp~g~~l~s~~~dg~~i~iw  286 (403)
                      +.|..+ +++++-   +..+|+.|.+|++||++-.... ++.  -|     ...|.+++..|.|++|++|-.|.. ..+|
T Consensus       184 ghilal-yswn~~---m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~ly  258 (350)
T KOG0641|consen  184 GHILAL-YSWNGA---MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLY  258 (350)
T ss_pred             ccEEEE-EEecCc---EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEE
Confidence            765433 344442   3345889999999999975433 322  12     256899999999999999999999 9999


Q ss_pred             EcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccce
Q 015650          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKY  366 (403)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (403)
                      |++.++.++.+..  |...|.++.|+|...||++++.|..|++-|+.-.-. .                      .+|  
T Consensus       259 dirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla-~----------------------el~--  311 (350)
T KOG0641|consen  259 DIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA-H----------------------ELP--  311 (350)
T ss_pred             EeeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccchh-h----------------------cCc--
Confidence            9999999999986  789999999999999999999999999999875431 1                      111  


Q ss_pred             eeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          367 FSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                            +..+..|++.+-.+.|+|..-.+++.++|.+
T Consensus       312 ------~~vv~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  312 ------IMVVAEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             ------eEEEEeccCceEEEEecCccceeeeccCcce
Confidence                  2234556777778999999988888888864

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.9e-25  Score=204.99  Aligned_cols=227  Identities=14%  Similarity=0.162  Sum_probs=177.5

Q ss_pred             cccCCCCCCeEEEEEcC-CCCEEEEEcCC-cEEEEEcCCCee-----EEEEecccCcceeEEEEeeeCCe-EEEeeCCCC
Q 015650           79 STSSSPPPTLLHISFNQ-DHGCFAAGTDH-GFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNI-LALVGGGPD  150 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~-d~~~l~~~~~~-~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d  150 (403)
                      ..+.+|.+.|++++|+| ++.+|++|+++ .|+||++.....     .....+. +|...|..+.|+++. ..+++++.|
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            34789999999999999 88999999855 599999975431     1224555 788999999999975 688888888


Q ss_pred             CCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCc-eeEEEeeC
Q 015650          151 PQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK-GLCAVSQG  225 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~  225 (403)
                           +.|+|||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||+++++.+..+..|.... ..+.|.++
T Consensus       148 -----gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        148 -----MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             -----CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence                 999999999999988888 889999999999999887   48999999999999888888876643 35667776


Q ss_pred             CCeEEEEe--eCCccCeEEEEEccCCc--eeEEeec-CCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEec
Q 015650          226 VGSLVLVC--PGLQKGQVRVEHYASKR--TKFIMAH-DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       226 ~~~~~~~~--~g~~d~~i~v~d~~~~~--~~~~~~~-~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      ++.+ +++  .++.|+.|++||++...  ......+ ...+....|++++++|++++. |+. |++||+.+++.+.....
T Consensus       223 ~~~i-vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~  300 (493)
T PTZ00421        223 KDLI-ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSY  300 (493)
T ss_pred             CCeE-EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeec
Confidence            5543 332  12458999999998632  3333323 345666789999999998874 999 99999999988776653


Q ss_pred             CCCcccEEEEEeCCC
Q 015650          300 GADRAEIYSLAFSSN  314 (403)
Q Consensus       300 ~~~~~~v~~l~~s~d  314 (403)
                      . +..++..++|.|.
T Consensus       301 ~-s~~~~~g~~~~pk  314 (493)
T PTZ00421        301 S-SVEPHKGLCMMPK  314 (493)
T ss_pred             c-CCCCCcceEeccc
Confidence            2 4457788888884

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.4e-26  Score=194.97  Aligned_cols=241  Identities=20%  Similarity=0.277  Sum_probs=199.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCc
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~  156 (403)
                      +.+......|.++.|-.||++||+|++.| |+|||+.+..  ..+.+. .|..++....|+++ ...++++++|     +
T Consensus        62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd-----~  133 (487)
T KOG0310|consen   62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDD-----K  133 (487)
T ss_pred             hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH--HHHHHh-hccCceeEEEecccCCeEEEecCCC-----c
Confidence            55666778999999999999999999777 9999965422  236666 79999999999885 6678888888     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      .+++||+.+......+. |...|.+.+|+|... +++   .||+|++||++.. ..+.++ .|..++..+.+-|.+..  
T Consensus       134 v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~--  210 (487)
T KOG0310|consen  134 VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSL--  210 (487)
T ss_pred             eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCE--
Confidence            99999999988655666 999999999999654 444   5999999999986 566666 47889999998888763  


Q ss_pred             EEeeCCccCeEEEEEccCCc-ee-EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          231 LVCPGLQKGQVRVEHYASKR-TK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~-~~-~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      ++++|  ...|++||+.++. .. .+..|...|+|+++..++..|++++-|+. |++||+.+.+.+..+.   ..++|.+
T Consensus       211 iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLs  284 (487)
T KOG0310|consen  211 IASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLS  284 (487)
T ss_pred             EEEcC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceee
Confidence            44434  3789999998633 32 33459999999999999999999999999 9999999999999888   6789999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      |+.+|+++.++.|..+|.+.+=+....+
T Consensus       285 iavs~dd~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  285 IAVSPDDQTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             EEecCCCceEEEecccceeeeehhhccc
Confidence            9999999999999999988777555544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.2e-26  Score=194.28  Aligned_cols=238  Identities=18%  Similarity=0.277  Sum_probs=200.1

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ..++.+..+.|+++.|.++++.+++++ |+.+++|+++..+..  .+|. +|...|+++.|......+++++.|     .
T Consensus       212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLs-GHtdkVt~ak~~~~~~~vVsgs~D-----R  283 (459)
T KOG0288|consen  212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLS-GHTDKVTAAKFKLSHSRVVSGSAD-----R  283 (459)
T ss_pred             hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhc-ccccceeeehhhccccceeecccc-----c
Confidence            356778888999999999998877666 666999999877655  7787 799999999998877779999999     9


Q ss_pred             eEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      +|++||+....+.+++-....+.+|..+  ...++   .|++|++||++...+...+..+. .+..+.+++++..++ .+
T Consensus       284 tiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lL-ss  359 (459)
T KOG0288|consen  284 TIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELL-SS  359 (459)
T ss_pred             hhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEe-ee
Confidence            9999999999998888777778888877  23333   69999999999999998887655 889999999987653 33


Q ss_pred             eCCccCeEEEEEccCCceeEEe-e----cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          234 PGLQKGQVRVEHYASKRTKFIM-A----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~~~~~-~----~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                        +.|.++.+.|+++..+.... +    -....+.+.|||++.|+++|+.||. |+||++.++++...+........|++
T Consensus       360 --sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s  436 (459)
T KOG0288|consen  360 --SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITS  436 (459)
T ss_pred             --cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEE
Confidence              47899999999997765432 1    1234788999999999999999999 99999999999998887533347999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEE
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVF  330 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iw  330 (403)
                      ++|+|.|.+|++++.++.+.+|
T Consensus       437 ~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  437 LSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEEcCCCchhhcccCCcceEec
Confidence            9999999999999999999999

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=2.5e-26  Score=185.91  Aligned_cols=281  Identities=15%  Similarity=0.192  Sum_probs=218.7

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCC---------------C-eeEEEEecccCcceeEEEEeeeCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP---------------F-REIFRRDFERGGGIGVVEMLFRCN  140 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~---------------~-~~~~~~~~~~~~~~~v~~~~~~~~  140 (403)
                      ...+..|...+.+.+|++||.++|+|+ |..|+|+|++.               . .....+++. .|...|..+.|+|.
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPr  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPR  183 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecch
Confidence            356788999999999999999999999 55599999851               0 112335665 68899999999999


Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCCCceeE---EEecCCceeEEEEecCceEEE--ec-CeEEEEEcCCceeeeEe---e
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRDRIIVV--LE-QKIFVYNFADLKLLHQI---E  211 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~--~d-~~i~i~d~~~~~~~~~~---~  211 (403)
                      ...|+++++|     ++|++||+..-...+   .++...+|.++.|+|.|.+++  .| .++++||+++-++...-   .
T Consensus       184 e~ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~  258 (430)
T KOG0640|consen  184 ETILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD  258 (430)
T ss_pred             hheEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence            9999999999     999999987654333   344678999999999999888  34 58999999998776543   3


Q ss_pred             ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ceeEE-eecC-CceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFI-MAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (403)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~-~~~~-~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~  288 (403)
                      .|...|..+.+++.++  +.++ ++.||.|++||--.. ++.++ .+|. ..|.+..|..+|+|+++.+.|.. +++|.+
T Consensus       259 qht~ai~~V~Ys~t~~--lYvT-aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi  334 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGS--LYVT-ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEI  334 (430)
T ss_pred             ccccceeEEEecCCcc--EEEE-eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeee
Confidence            5677788888888876  3333 579999999996664 44444 3565 46889999999999999999999 999999


Q ss_pred             CCCcEEEEEecCCCcc---cEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccc
Q 015650          289 LDGTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (403)
Q Consensus       289 ~~~~~~~~~~~~~~~~---~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (403)
                      .+++++.++.+....+   --+...|+....+++.-. ..+.+.-||.++.......                       
T Consensus       335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~-----------------------  391 (430)
T KOG0640|consen  335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL-----------------------  391 (430)
T ss_pred             cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc-----------------------
Confidence            9999999988642222   234566888888877665 4678999999998742211                       


Q ss_pred             ceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                                 --+|.+.+..+.-||.+..+.+++.|-
T Consensus       392 -----------slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  392 -----------SLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             -----------ccCCCCCceEEEeCCCCCceeeecccc
Confidence                       235567777788899999999988874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=7.2e-26  Score=208.06  Aligned_cols=240  Identities=20%  Similarity=0.318  Sum_probs=205.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      +.+|.+.|.+++|..-+.+|++|+ |.+++|||+.++++.  ..+. +|...+..+...  ...+++++.|     .+|+
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~--~~l~-gh~stv~~~~~~--~~~~~sgs~D-----~tVk  314 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT--HSLQ-GHTSSVRCLTID--PFLLVSGSRD-----NTVK  314 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE--EEec-CCCceEEEEEcc--CceEeeccCC-----ceEE
Confidence            899999999999987788999998 777999999888877  6776 788888887664  4466778888     9999


Q ss_pred             EEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      +|++.++..+..+. |..+|.++.++ ...++.  .|++|++||..++++++.+.+|...|..+.+... +  .+. +|+
T Consensus       315 VW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~--~~~-Sgs  389 (537)
T KOG0274|consen  315 VWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N--RLL-SGS  389 (537)
T ss_pred             EEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c--eEE-eee
Confidence            99999999999999 99999999998 333333  6999999999999999999999999998877664 2  233 467


Q ss_pred             ccCeEEEEEccCC--ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC
Q 015650          237 QKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (403)
Q Consensus       237 ~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d  314 (403)
                      .|+.|++||++++  .+..+.+|..-+..+.+  .+++|++++.|+. |++||..++++++++... |...|..+++.  
T Consensus       390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--  463 (537)
T KOG0274|consen  390 LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--  463 (537)
T ss_pred             eccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--
Confidence            8999999999997  66778889888877765  7889999999999 999999999999999974 55788888886  


Q ss_pred             CCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650          315 AQWLAVSSDKGTVHVFNLKVNSGSARS  341 (403)
Q Consensus       315 ~~~l~s~~~dg~v~iwd~~~~~~~~~~  341 (403)
                      ...+++++.||.+++||+++++.....
T Consensus       464 ~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  464 KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cceEEEEecCCeeEEEecccCchhhhh
Confidence            467888899999999999999976654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.5e-26  Score=208.07  Aligned_cols=235  Identities=13%  Similarity=0.186  Sum_probs=192.4

Q ss_pred             cccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC--------------------------------C-----
Q 015650          124 FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--------------------------------S-----  166 (403)
Q Consensus       124 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~--------------------------------~-----  166 (403)
                      +...|...|+++.|+++|.+||+++.|     +.|+||.+..                                .     
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            334799999999999999999999999     9999998754                                0     


Q ss_pred             -----------------------ceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeE
Q 015650          167 -----------------------RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLC  220 (403)
Q Consensus       167 -----------------------~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  220 (403)
                                             ++++.|. |...|.++.|+.++.+|.  .|.+|++|++...+++..| .|.+.|+++
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcV  415 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCV  415 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEE
Confidence                                   0223444 778899999999999888  6999999999999999998 589999999


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (403)
                      +|+|.++..++  +|+-|+.|+||++...++.....-..-|++++|.|||++.+.|+.+|. +++|+....+....+...
T Consensus       416 aFnPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  416 AFNPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             EecccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEe
Confidence            99998887554  378999999999999998888777789999999999999999999999 999999888776655432


Q ss_pred             CC------cccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeee
Q 015650          301 AD------RAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSV  373 (403)
Q Consensus       301 ~~------~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (403)
                      .+      ...|++++|.|... .|++.+.|..|+|||.++.+.+.++                                
T Consensus       493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf--------------------------------  540 (712)
T KOG0283|consen  493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF--------------------------------  540 (712)
T ss_pred             eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh--------------------------------
Confidence            22      23799999997443 5777789999999999887753332                                


Q ss_pred             EEEEEeC--CCceEEEeccCCCEEEEEccCC
Q 015650          374 AQFRLVE--GSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       374 ~~~~~~~--~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                         ++..  ..-....|+.||++|++|++|.
T Consensus       541 ---KG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  541 ---KGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             ---cccccCCcceeeeEccCCCEEEEeecCc
Confidence               2111  1233467999999999999874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=5.3e-26  Score=188.63  Aligned_cols=243  Identities=13%  Similarity=0.206  Sum_probs=194.1

Q ss_pred             CccccCCCCCCeEEEEEc-CCC--CEEEEEc-CCcEEEEEcCCCeeEEE--EecccCcceeEEEEeeeCCeEEEeeCCCC
Q 015650           77 AESTSSSPPPTLLHISFN-QDH--GCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGPD  150 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s-~d~--~~l~~~~-~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  150 (403)
                      ...+..+|.++|.+++|. ++.  ..|++++ |.++++|.++.+.....  ... .+|...|.++...+++..+++++-|
T Consensus       136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D  214 (423)
T KOG0313|consen  136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC-RGHKRSVDSVSVDSSGTRFCSGSWD  214 (423)
T ss_pred             eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh-cccccceeEEEecCCCCeEEeeccc
Confidence            347789999999988884 332  3467766 77799999876654321  222 3899999999999999999999999


Q ss_pred             CCCCCceEEEEECCC-------------------------CceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcC
Q 015650          151 PQYPLNKVMIWDDHQ-------------------------SRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFA  202 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~-------------------------~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~  202 (403)
                           ..|+||+..+                         +.++..+. |.++|.++.|.+....+.  .|.+|+.||+.
T Consensus       215 -----~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  215 -----TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             -----ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEee
Confidence                 9999999321                         22455666 999999999998555444  59999999999


Q ss_pred             CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc----eeEEeecCCceEEEEEcCCC-CEEEEEe
Q 015650          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDG-QLLATSS  277 (403)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~----~~~~~~~~~~i~~~~~sp~g-~~l~s~~  277 (403)
                      ++..+.++.+ ...+.++.+++..+  ++++ |+.|..|++||.+++.    ...+.+|.+.|.++.|+|.. ..|++++
T Consensus       290 tg~~~~~~~~-~ksl~~i~~~~~~~--Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S  365 (423)
T KOG0313|consen  290 TGGLKSTLTT-NKSLNCISYSPLSK--LLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS  365 (423)
T ss_pred             cccceeeeec-CcceeEeecccccc--eeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence            9998888764 44567777777544  4554 6789999999999843    35678999999999999955 5678999


Q ss_pred             CCCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          278 TKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       278 ~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      .|++ +++||+++.+ ++..+.+  |...|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus       366 ~D~t-~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  366 YDNT-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cCCe-EEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            9999 9999999887 8888886  67899999996 57799999999999998754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=4.8e-26  Score=212.40  Aligned_cols=251  Identities=17%  Similarity=0.170  Sum_probs=203.0

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC------C----------eeEEEEecccCcceeEEEEeeeCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP------F----------REIFRRDFERGGGIGVVEMLFRCN  140 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~------~----------~~~~~~~~~~~~~~~v~~~~~~~~  140 (403)
                      ......|.+.|+|+.|+|||++||+|+|+. |.||....      .          .-.....+. +|...|..+.|+|+
T Consensus        62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPD  140 (942)
T ss_pred             heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCC
Confidence            355678999999999999999999999887 99999862      0          011234555 79999999999999


Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCC-
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-  215 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-  215 (403)
                      +.++++++.|     ++|.|||..+.+.+..++ |...|..+.|.|-|++++   .|++|++|++.+....+.+..+.. 
T Consensus       141 ~~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~  215 (942)
T KOG0973|consen  141 DSLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE  215 (942)
T ss_pred             ccEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence            9999999999     999999999999999999 999999999999999999   489999999887766666654332 


Q ss_pred             -----CceeEEEeeCCCeEEEEeeCC---ccCeEEEEEccCCc-eeEEeecCCceEEEEEcCC-------------CC--
Q 015650          216 -----PKGLCAVSQGVGSLVLVCPGL---QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-------------GQ--  271 (403)
Q Consensus       216 -----~~~~~~~~~~~~~~~~~~~g~---~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~-------------g~--  271 (403)
                           ...-+.|+|||+.  +++...   .-..+.|.+-.+-. -..+.+|..++.+++|+|.             ..  
T Consensus       216 ~~~~T~f~RlSWSPDG~~--las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  216 SPLTTFFLRLSWSPDGHH--LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             CCCcceeeecccCCCcCe--ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence                 2345778888875  444222   23457777765533 4668899999999999981             11  


Q ss_pred             --EEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          272 --LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       272 --~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                        .+|+|+.|++ |.||.....+++..+..- ....|.+++|+|||..|++++.||+|.++.++..+--
T Consensus       294 y~i~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG  360 (942)
T KOG0973|consen  294 YCIAAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG  360 (942)
T ss_pred             eEEEEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence              6789999999 999998877777665532 4568999999999999999999999999999876643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=4.5e-26  Score=204.30  Aligned_cols=237  Identities=17%  Similarity=0.266  Sum_probs=208.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      ..+-+.+..|-|.++++++|.++| +.|||+......  .+.+ .|...++.++..|++..+++++.|     .+|++||
T Consensus       411 ~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~--Eti~-AHdgaIWsi~~~pD~~g~vT~saD-----ktVkfWd  482 (888)
T KOG0306|consen  411 TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV--ETIR-AHDGAIWSISLSPDNKGFVTGSAD-----KTVKFWD  482 (888)
T ss_pred             ccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh--hhhh-ccccceeeeeecCCCCceEEecCC-----cEEEEEe
Confidence            344889999999999999999877 999999876654  4454 799999999999999999999999     9999999


Q ss_pred             CCC-----Cce--------eEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC
Q 015650          163 DHQ-----SRC--------IGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       163 ~~~-----~~~--------~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (403)
                      ..-     |..        .++++....|.++.++||+++++   .|+++++|-+.+.+..-.+.+|.-++.++.++|++
T Consensus       483 f~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS  562 (888)
T KOG0306|consen  483 FKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS  562 (888)
T ss_pred             EEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc
Confidence            632     111        13444678999999999999999   59999999999999999999999999999999998


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      +  ++++ |+.|..|++|-++-+.+ +.+.+|...|.++.|-|+...+.+++.|+. |+-||-...++++++.+  |...
T Consensus       563 k--livT-gSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~e  636 (888)
T KOG0306|consen  563 K--LIVT-GSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSE  636 (888)
T ss_pred             C--eEEe-ccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeecc--chhe
Confidence            7  3444 66899999999998655 568899999999999999999999999999 99999999999999997  6689


Q ss_pred             EEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      |++++.+|+|.++++++.|.+|++|.-..
T Consensus       637 v~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  637 VWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999999998655

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=4.4e-24  Score=197.01  Aligned_cols=217  Identities=10%  Similarity=0.118  Sum_probs=166.0

Q ss_pred             cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCc--------eeEEEe-cCC
Q 015650          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR--------CIGELS-FRS  176 (403)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~--------~~~~~~-~~~  176 (403)
                      .|++|+......  ...+. +|...|.++.|+|+ ...+++++.|     +.|+|||+.++.        ++..+. |..
T Consensus        55 vI~L~~~~r~~~--v~~L~-gH~~~V~~lafsP~~~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         55 AIRLENQMRKPP--VIKLK-GHTSSILDLQFNPCFSEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             EEEeeecCCCce--EEEEc-CCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecCCC
Confidence            389998765433  35665 79999999999996 7889999999     999999997642        234555 889


Q ss_pred             ceeEEEEecCceEE-E---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-
Q 015650          177 EVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-  251 (403)
Q Consensus       177 ~i~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-  251 (403)
                      .|.+++|+|++..+ +   .|++|++||+++++.+..+. +...+..++|++++..  +++ ++.|+.|+|||++++.. 
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~l--Lat-~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNL--LSG-TCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCE--EEE-EecCCEEEEEECCCCcEE
Confidence            99999999988644 3   48999999999988777775 4567889999998873  443 34789999999998654 


Q ss_pred             eEEeecCCceEE-----EEEcCCCCEEEEEeCCC----cEEEEEEcCC-CcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650          252 KFIMAHDSRIAC-----FALTQDGQLLATSSTKG----TLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (403)
Q Consensus       252 ~~~~~~~~~i~~-----~~~sp~g~~l~s~~~dg----~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~  321 (403)
                      ..+.+|.+.+.+     ..|++++.+|++++.++    . |+|||+++ .+++..+....+.+.+......++|.++++|
T Consensus       203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence            557788876443     34568999999988764    6 99999985 5666666543333444444445668899999


Q ss_pred             eCCCcEEEEEeecCC
Q 015650          322 SDKGTVHVFNLKVNS  336 (403)
Q Consensus       322 ~~dg~v~iwd~~~~~  336 (403)
                      +.|+.|++|++..+.
T Consensus       282 kGD~tIr~~e~~~~~  296 (568)
T PTZ00420        282 KGDGNCRYYQHSLGS  296 (568)
T ss_pred             ECCCeEEEEEccCCc
Confidence            999999999998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.1e-26  Score=200.84  Aligned_cols=242  Identities=16%  Similarity=0.287  Sum_probs=197.5

Q ss_pred             CCCCeE---EEEEc-CCCCEEEEEcCCc-EEEEEcCCCeeE----EEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           84 PPPTLL---HISFN-QDHGCFAAGTDHG-FRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        84 ~~~~i~---~i~~s-~d~~~l~~~~~~~-i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      |...|.   .+..+ |.+++|.+|+.++ |++|++......    +...++ .|...+..+....++..+++++.|    
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsD----   94 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSD----   94 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCC----
Confidence            444455   44443 5678899998555 999998644332    345665 789999999999999999999999    


Q ss_pred             CceEEEEECCCC--ceeEEEe-cCCceeEEEE-ecCceEEE---ecCeEEEEEcCCc--eeeeE--------ee-ccCCC
Q 015650          155 LNKVMIWDDHQS--RCIGELS-FRSEVRSVKL-RRDRIIVV---LEQKIFVYNFADL--KLLHQ--------IE-TIANP  216 (403)
Q Consensus       155 ~~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~-~~~~~~~~---~d~~i~i~d~~~~--~~~~~--------~~-~~~~~  216 (403)
                       .+|++|+...+  -++.++. |...|.++++ .++..+++   .|+.|++||++++  +.+..        +. ++...
T Consensus        95 -tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen   95 -TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             -ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence             99999999877  4666776 9999999999 67777777   4899999999977  22222        22 55667


Q ss_pred             ceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (403)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~  295 (403)
                      ++.++.++.+  .+++ +|+..+.+++||.++ +++..+.+|...|.++..++||..+++++.||+ |++||+...+++.
T Consensus       174 iYSLA~N~t~--t~iv-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~  249 (735)
T KOG0308|consen  174 IYSLAMNQTG--TIIV-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLA  249 (735)
T ss_pred             eeeeecCCcc--eEEE-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceee
Confidence            7777777766  3444 466889999999998 567778899999999999999999999999999 9999999999999


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       296 ~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ++..  |...|+++..+|+=.++++|+.||.|+.=|+++...
T Consensus       250 T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  250 TYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             eEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence            9886  677899999999999999999999999999998643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=1.9e-24  Score=171.48  Aligned_cols=230  Identities=15%  Similarity=0.164  Sum_probs=195.3

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcC
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA  202 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~  202 (403)
                      +|..+++.+.|+.++.+|.+++.|     .+..+|-..+|+.+.++. |.+.|+++....+...++   .|.++++||.+
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD-----~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKD-----STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCC-----CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            799999999999999999999999     999999988999999999 999999999999988888   59999999999


Q ss_pred             CceeeeEeeccCCCceeEEEeeCCCeEEEEe--eCCccCeEEEEEccC--------CceeEEeecCCceEEEEEcCCCCE
Q 015650          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVC--PGLQKGQVRVEHYAS--------KRTKFIMAHDSRIACFALTQDGQL  272 (403)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~d~~i~v~d~~~--------~~~~~~~~~~~~i~~~~~sp~g~~  272 (403)
                      +|+++..++. ..++..+.|+++++..++.+  .-...+.|.++|++.        .+...+..+...++.+-|.|-+++
T Consensus        83 tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   83 TGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             CCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            9999999875 56788999999987654443  112457899999984        225667788899999999999999


Q ss_pred             EEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCc
Q 015650          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (403)
Q Consensus       273 l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  352 (403)
                      |++|..||. |.+||+++|+.+..-.. .|...|+.|++++|..++++++.|.+-++||+.+-+...             
T Consensus       162 ii~Ghe~G~-is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K-------------  226 (327)
T KOG0643|consen  162 IIAGHEDGS-ISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK-------------  226 (327)
T ss_pred             EEEecCCCc-EEEEEcccCceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEE-------------
Confidence            999999999 99999999865544322 277899999999999999999999999999999987321             


Q ss_pred             ccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                                             -...+.+|++.+++|-...++.|+.
T Consensus       227 -----------------------ty~te~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  227 -----------------------TYTTERPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             -----------------------EeeecccccceecccccceEEecCC
Confidence                                   2233568999999998777776653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=3.7e-25  Score=187.87  Aligned_cols=249  Identities=12%  Similarity=0.163  Sum_probs=191.2

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEE-EEEcCCc-EEEEEcCCCeeEE--------EEecccCcceeEEEEeeeCC-eEEEe
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCF-AAGTDHG-FRIYNCDPFREIF--------RRDFERGGGIGVVEMLFRCN-ILALV  145 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l-~~~~~~~-i~iw~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~-~~~~~  145 (403)
                      +......|.+.|+.+.+.|....| |+++.++ |.|||........        ...+. +|...-.+++|+.. ...++
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Ll  194 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLL  194 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEe
Confidence            345566799999999999987555 5556666 9999985432221        12444 56666677888775 44677


Q ss_pred             eCCCCCCCCCceEEEEECCCCce-------eEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcC--CceeeeEee
Q 015650          146 GGGPDPQYPLNKVMIWDDHQSRC-------IGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFA--DLKLLHQIE  211 (403)
Q Consensus       146 s~~~d~~~~~~~i~iwd~~~~~~-------~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~--~~~~~~~~~  211 (403)
                      +++.|     +.|++||+.....       ...+. |...|..++|++-...++    .|+.+.|||++  +.+..+...
T Consensus       195 s~~~d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~  269 (422)
T KOG0264|consen  195 SGSDD-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK  269 (422)
T ss_pred             eccCC-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence            88888     9999999865432       33445 899999999999654333    48899999999  566677788


Q ss_pred             ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEc
Q 015650          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNT  288 (403)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~  288 (403)
                      .|...+.+++|+|.+.. ++|+ |+.|++|.+||+|+  .++..+.+|...|.++.|+|+ ...||+++.|+. +.|||+
T Consensus       270 ah~~~vn~~~fnp~~~~-ilAT-~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDl  346 (422)
T KOG0264|consen  270 AHSAEVNCVAFNPFNEF-ILAT-GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDL  346 (422)
T ss_pred             ccCCceeEEEeCCCCCc-eEEe-ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEec
Confidence            99999999999999864 3454 66899999999998  667888999999999999995 467899999999 999998


Q ss_pred             CCCcE------------EEEEecCCCcccEEEEEeCCCCCE-EEEEeCCCcEEEEEeec
Q 015650          289 LDGTL------------LQEVRRGADRAEIYSLAFSSNAQW-LAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       289 ~~~~~------------~~~~~~~~~~~~v~~l~~s~d~~~-l~s~~~dg~v~iwd~~~  334 (403)
                      ..-..            -..|.-+.|...|..+.|+|+..+ |++.++|+.++||+...
T Consensus       347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            64211            112333448899999999998875 67888999999999873

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.5e-25  Score=186.57  Aligned_cols=278  Identities=15%  Similarity=0.207  Sum_probs=213.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCCCCceE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKV  158 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~i  158 (403)
                      ...-.+.|++|.|+|...+|.+++ |+.++||.++.........+. -...+|....|.+++. .++++++.     ..+
T Consensus       209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~  282 (514)
T KOG2055|consen  209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR-----KYL  282 (514)
T ss_pred             CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccc-----eEE
Confidence            344567899999999999988887 777999999866555445554 4667899999999988 78888887     899


Q ss_pred             EEEECCCCceeEEEe----cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          159 MIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      +.||+.+.+..+.-.    ....+.....++++.+++.   .|.|.+....+++.+..++. .+.+..++|+.+++.++ 
T Consensus       283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~-  360 (514)
T KOG2055|consen  283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELL-  360 (514)
T ss_pred             EEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEE-
Confidence            999998886544332    2346778899999999883   77899999999999988864 56678899998886544 


Q ss_pred             EeeCCccCeEEEEEccCCceeEEeecCCce--EEEEEcCCCCEEEEEeCCCcEEEEEEcCC------CcEEEEEecCCCc
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRI--ACFALTQDGQLLATSSTKGTLVRIFNTLD------GTLLQEVRRGADR  303 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i--~~~~~sp~g~~l~s~~~dg~~i~iwd~~~------~~~~~~~~~~~~~  303 (403)
                      ++ | .+|.|.+||++...+.......+.|  ++++.+++|.|||+|+..|. |.|||..+      .+++..+..  -.
T Consensus       361 ~~-~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--Lt  435 (514)
T KOG2055|consen  361 AS-G-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--LT  435 (514)
T ss_pred             EE-c-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--hh
Confidence            43 2 5789999999997655443334433  56788899999999999999 99999654      345555543  34


Q ss_pred             ccEEEEEeCCCCCEEEEEe--CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC
Q 015650          304 AEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (403)
                      ..|++|+|++|+++||.++  .+..+++-.+.+-....                              .|...  -.+-+
T Consensus       436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs------------------------------NfP~~--n~~vg  483 (514)
T KOG2055|consen  436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS------------------------------NFPTS--NTKVG  483 (514)
T ss_pred             eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeec------------------------------cCCCC--CCccc
Confidence            6899999999999998887  57789999988766321                              11111  11235


Q ss_pred             CceEEEeccCCCEEEEEccCCC
Q 015650          382 SPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       382 ~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .|++++|||.|.+||+|.++|.
T Consensus       484 ~vtc~aFSP~sG~lAvGNe~gr  505 (514)
T KOG2055|consen  484 HVTCMAFSPNSGYLAVGNEAGR  505 (514)
T ss_pred             ceEEEEecCCCceEEeecCCCc
Confidence            7999999999999999999883

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=4.3e-26  Score=185.69  Aligned_cols=241  Identities=17%  Similarity=0.281  Sum_probs=211.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.-+..+|.|+.|+.|...||+|+ |+.|+||.+.++.++  +.+...|...|+++.|+.|+..+.+++.|     .+
T Consensus       257 d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl--RrFdrAHtkGvt~l~FSrD~SqiLS~sfD-----~t  329 (508)
T KOG0275|consen  257 DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL--RRFDRAHTKGVTCLSFSRDNSQILSASFD-----QT  329 (508)
T ss_pred             cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH--HHhhhhhccCeeEEEEccCcchhhccccc-----ce
Confidence            55777999999999999999999999 555999999999877  77777899999999999999999999999     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCC--CceeEEEeeCCCeEEE
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVL  231 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  231 (403)
                      ++|--++.|++++++. |...|+...|.+||..++   +||+|++|+..+.+++.+++....  ++..+-+-|.+...++
T Consensus       330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~i  409 (508)
T KOG0275|consen  330 VRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFI  409 (508)
T ss_pred             EEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEE
Confidence            9999999999999999 999999999999999888   599999999999999999875443  4555666666666667


Q ss_pred             EeeCCccCeEEEEEccCCceeEEee---cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      +|  ...++|++.++..+.++.+..   ..+...+..++|.|.++++.+.|+. ++.|.+.+|++.+++..  |+..|-.
T Consensus       410 VC--Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~V--hEkdvIG  484 (508)
T KOG0275|consen  410 VC--NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPV--HEKDVIG  484 (508)
T ss_pred             EE--cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeec--ccccccc
Confidence            76  467899999998887777653   3455667789999999999999999 99999999999999886  7788999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEE
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      ++-+|..+.||+-++||.+++|.
T Consensus       485 l~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  485 LTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999995

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9e-24  Score=171.85  Aligned_cols=239  Identities=14%  Similarity=0.152  Sum_probs=188.3

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE-----ecCe
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-----LEQK  195 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~d~~  195 (403)
                      +.+. .....+.++.|+.++..+++++.|     ..|+|||..+++.++++. ++..+..++|......+.     .|.+
T Consensus         8 k~f~-~~~~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    8 KVFR-ETNGKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             cccc-cCCCceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence            3443 356789999999999999998887     899999999999999998 777888899977655444     3789


Q ss_pred             EEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEE
Q 015650          196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT  275 (403)
Q Consensus       196 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s  275 (403)
                      |+..++.+.+.++.|.+|...|..++++|.++.+  .+ ++.|++|++||++..+.+.+..- ..-..++|+|.|-++|+
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~F--lS-~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTF--LS-SSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFAL  157 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeE--Ee-cccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEE
Confidence            9999999999999999999999999999998643  32 46899999999997665544322 22345789999999999


Q ss_pred             EeCCCcEEEEEEcCCC--cEEEEEecC-CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCc
Q 015650          276 SSTKGTLVRIFNTLDG--TLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (403)
Q Consensus       276 ~~~dg~~i~iwd~~~~--~~~~~~~~~-~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  352 (403)
                      +...+. |++||+++.  .+..++... ......+.|.|||||++|+.+...+.+++.|.-+|....++.          
T Consensus       158 ~~~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs----------  226 (311)
T KOG1446|consen  158 ANGSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS----------  226 (311)
T ss_pred             ecCCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe----------
Confidence            988877 999999864  344444432 234689999999999999999999999999999887422221          


Q ss_pred             ccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                            .............|+||++++++|+.||+
T Consensus       227 ----------------------~~~~~~~~~~~a~ftPds~Fvl~gs~dg~  255 (311)
T KOG1446|consen  227 ----------------------GYPNAGNLPLSATFTPDSKFVLSGSDDGT  255 (311)
T ss_pred             ----------------------eccCCCCcceeEEECCCCcEEEEecCCCc
Confidence                                  11111112245789999999999999995

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=9.4e-24  Score=194.83  Aligned_cols=176  Identities=7%  Similarity=0.103  Sum_probs=142.4

Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCce--------eeeEeeccCCCceeEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLK--------LLHQIETIANPKGLCAV  222 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~~~  222 (403)
                      +.|++|+......+..+. |...|.+++|+|+ +.+++   .|++|++||+.++.        .+..+.+|...+..++|
T Consensus        54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf  133 (568)
T PTZ00420         54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW  133 (568)
T ss_pred             eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence            899999988877777887 9999999999996 56666   49999999997642        23456788899999999


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (403)
                      +|++..++ ++ ++.|+.|++||++++.......|...|.+++|+|+|.+|++++.|+. |+|||+++++.+.++.+  |
T Consensus       134 ~P~g~~iL-aS-gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~g--H  208 (568)
T PTZ00420        134 NPMNYYIM-CS-SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFHI--H  208 (568)
T ss_pred             CCCCCeEE-EE-EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEec--c
Confidence            99876533 33 34799999999998765433346778999999999999999999999 99999999999988886  4


Q ss_pred             cccE-----EEEEeCCCCCEEEEEeCCC----cEEEEEeecCC
Q 015650          303 RAEI-----YSLAFSSNAQWLAVSSDKG----TVHVFNLKVNS  336 (403)
Q Consensus       303 ~~~v-----~~l~~s~d~~~l~s~~~dg----~v~iwd~~~~~  336 (403)
                      .+.+     ....|++++.+|++++.|+    .|+|||+++..
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~  251 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT  251 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence            4433     3345678999999988764    79999999644

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=4.5e-24  Score=168.84  Aligned_cols=243  Identities=16%  Similarity=0.220  Sum_probs=201.6

Q ss_pred             CCCccccCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650           75 SPAESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (403)
Q Consensus        75 ~~~~~~~~~~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (403)
                      ........+|.+.|-.++|.|. ..+|++++ ++.|++||+...++.......    ..-.-+.|+|++.+++.++.|  
T Consensus        54 ~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~----~eni~i~wsp~g~~~~~~~kd--  127 (313)
T KOG1407|consen   54 FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK----GENINITWSPDGEYIAVGNKD--  127 (313)
T ss_pred             hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc----CcceEEEEcCCCCEEEEecCc--
Confidence            3344668899999999999875 45677666 677999999988877443332    333557789999999999998  


Q ss_pred             CCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e--cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                         ..|.+.|.++.+.+...+....+..++|+.++.+++ .  .|+|.|......+.++.++.|.....++.|+|+|+  
T Consensus       128 ---D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--  202 (313)
T KOG1407|consen  128 ---DRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--  202 (313)
T ss_pred             ---ccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc--
Confidence               899999999999998888888899999997776665 3  57999999999999999999987777777777776  


Q ss_pred             EEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          230 VLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      ++|+ |+.|..+.+||+.. -..+.+..+.-+|..+.|+-||++||++++|.. |-|=++++|..+.++.   +.++...
T Consensus       203 yfA~-GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~t  277 (313)
T KOG1407|consen  203 YFAT-GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFT  277 (313)
T ss_pred             eEee-ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCcee
Confidence            6675 66899999999988 455677889999999999999999999999999 9999999999999998   7789999


Q ss_pred             EEeCCCCCEEEEEeCC---------CcEEEEEee
Q 015650          309 LAFSSNAQWLAVSSDK---------GTVHVFNLK  333 (403)
Q Consensus       309 l~~s~d~~~l~s~~~d---------g~v~iwd~~  333 (403)
                      ++|+|...+||-+++|         |.|++|-+.
T Consensus       278 VAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  278 VAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             EEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            9999999999887754         456666544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=183.15  Aligned_cols=226  Identities=18%  Similarity=0.284  Sum_probs=192.1

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCce
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK  205 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~  205 (403)
                      ..+.++...+....+.+++.|     ..+.++|...++.+..++ |...|..+.++++...+.   .|..|++|......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d-----~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGED-----KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCC-----CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence            356677776666678889988     899999999999999999 999999999999988777   58899999988877


Q ss_pred             eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC---CceEEEEEcCCCCEEEEEeCCCcE
Q 015650          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTKGTL  282 (403)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~---~~i~~~~~sp~g~~l~s~~~dg~~  282 (403)
                      .......|..++..+..+|.++.++-+   +.|+...+.|++.+.......++   -.+++.+|+|||.+|.+|..|+. 
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~-  370 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV-  370 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEe---cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce-
Confidence            777788999999999999999865443   48999999999998776655554   35899999999999999999999 


Q ss_pred             EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccc
Q 015650          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV  362 (403)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (403)
                      |+|||+.+...+..|.+  |.++|..|+|+.+|-||+++++|+.|++||++..++.+++                     
T Consensus       371 vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~---------------------  427 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI---------------------  427 (506)
T ss_pred             EEEEEcCCccccccCCC--CCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee---------------------
Confidence            99999999998888886  8899999999999999999999999999999998864443                     


Q ss_pred             ccceeeeeeeeEEEEEeC-CCceEEEeccCCCEEEEEccC
Q 015650          363 LPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~-~~~~~~~fs~d~~~l~~~~~d  401 (403)
                                    .+.+ ..+..+.|...|.+|++++.|
T Consensus       428 --------------~l~~~~~v~s~~fD~SGt~L~~~g~~  453 (506)
T KOG0289|consen  428 --------------QLDEKKEVNSLSFDQSGTYLGIAGSD  453 (506)
T ss_pred             --------------eccccccceeEEEcCCCCeEEeecce
Confidence                          2222 246778888888888887654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=4.6e-25  Score=189.93  Aligned_cols=206  Identities=16%  Similarity=0.225  Sum_probs=159.3

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc----eeEEEe--cCCceeEEEEecCceEEE---e
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS--FRSEVRSVKLRRDRIIVV---L  192 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~----~~~~~~--~~~~i~~~~~~~~~~~~~---~  192 (403)
                      ..+. +|...|.++.+.+.|..+++|+.|     ..|++||+....    ..+.+.  ....|.++.|++.+..++   .
T Consensus       161 i~l~-hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  161 IQLK-HGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             Eecc-CCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            4565 788899999999999999999999     999999986542    233343  456899999999875544   3


Q ss_pred             cCeEEEEEcCCceeee------------EeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ceeEEe---
Q 015650          193 EQKIFVYNFADLKLLH------------QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIM---  255 (403)
Q Consensus       193 d~~i~i~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~~~~~---  255 (403)
                      ....+++|....+.+.            .-++|...+.+-+|+|..+..++.+  +.||++++||+...  +.+.+.   
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeecc
Confidence            5689999954332222            2245667778899999999988876  58999999999872  233332   


Q ss_pred             --ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc--EEEEEecCCCcc--cEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650          256 --AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRA--EIYSLAFSSNAQWLAVSSDKGTVHV  329 (403)
Q Consensus       256 --~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~--~v~~l~~s~d~~~l~s~~~dg~v~i  329 (403)
                        +..-+++.++|++||++||+|+.||. |.+|+..+..  ....++. +|..  .|++|.||+||++|++-+.|+++++
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~-AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKD-AHLPGQDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeee-ccCCCCceeEEEeccccchhhhccCCCceee
Confidence              23446899999999999999999999 9999975432  2222322 3554  8999999999999999999999999


Q ss_pred             EEeecCCC
Q 015650          330 FNLKVNSG  337 (403)
Q Consensus       330 wd~~~~~~  337 (403)
                      ||++..+.
T Consensus       391 WDLrq~kk  398 (641)
T KOG0772|consen  391 WDLRQFKK  398 (641)
T ss_pred             eecccccc
Confidence            99998874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.4e-25  Score=197.20  Aligned_cols=274  Identities=14%  Similarity=0.209  Sum_probs=207.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeE--EEEecc--cCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEE
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI--FRRDFE--RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~--~~~~~~--~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ...+++|..+++-..|++++...++||.+.+....  +...+.  ......+..+.|.. ...++++++..     |.|.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i~  113 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVIS  113 (839)
T ss_pred             ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcEE
Confidence            45567788889988898888888899988654322  112211  01223344555653 34567777777     9999


Q ss_pred             EEECCC---CceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          160 IWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       160 iwd~~~---~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      +||+..   .+.+..|. |...+.++.|++-...++    -||+|++||++..+-..++.+....+..+.|+|.....+.
T Consensus       114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~  193 (839)
T KOG0269|consen  114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFA  193 (839)
T ss_pred             EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEE
Confidence            999987   45666776 999999999998654444    4999999999998888888888889999999998766554


Q ss_pred             EeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE--EEEEecCCCcccEE
Q 015650          232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIY  307 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~  307 (403)
                      +  +.+.|.+++||++.  .....+.+|.++|.|+.|+|++.+||+|+.|+. |+|||+.+.+.  +.++.   ...+|.
T Consensus       194 s--~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv~  267 (839)
T KOG0269|consen  194 S--IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPVG  267 (839)
T ss_pred             E--ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecceee
Confidence            4  46889999999998  345667899999999999999999999999999 99999986543  34444   347899


Q ss_pred             EEEeCCCCCE-EEEEe--CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCce
Q 015650          308 SLAFSSNAQW-LAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (403)
Q Consensus       308 ~l~~s~d~~~-l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (403)
                      ++.|-|..++ ||+++  .|-.|+|||++.+=                          +|        +..+.-|...++
T Consensus       268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--------------------------IP--------~~t~~eH~~~vt  313 (839)
T KOG0269|consen  268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--------------------------IP--------YATFLEHTDSVT  313 (839)
T ss_pred             eeeeccCccchhhhhhccccceEEEEeecccc--------------------------cc--------ceeeeccCcccc
Confidence            9999998875 66665  67889999998753                          22        334555667788


Q ss_pred             EEEec-cCCCEEEEEccCCC
Q 015650          385 IVAFG-HQKNTVVILGMDGR  403 (403)
Q Consensus       385 ~~~fs-~d~~~l~~~~~dG~  403 (403)
                      .++|- .|-..|.+++.||+
T Consensus       314 ~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  314 GIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             ceeccCCCceeeEeecCccH
Confidence            88883 36677788888874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-24  Score=175.25  Aligned_cols=276  Identities=15%  Similarity=0.224  Sum_probs=220.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      +.+.+|.+.|+.++......++.+++ |.+.+||.++++.++  .++. +|...|.++.|++.+..+++++.|     ++
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL--~~Y~-GH~GSVNsikfh~s~~L~lTaSGD-----~t  213 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL--ATYT-GHTGSVNSIKFHNSGLLLLTASGD-----ET  213 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeeccccce--eeec-ccccceeeEEeccccceEEEccCC-----cc
Confidence            66889999999999887777888887 777999999999877  5565 899999999999999999999998     99


Q ss_pred             EEEEEC------CC------------------------------C----ceeEEEe-cCCceeEEEEecCceEEE---ec
Q 015650          158 VMIWDD------HQ------------------------------S----RCIGELS-FRSEVRSVKLRRDRIIVV---LE  193 (403)
Q Consensus       158 i~iwd~------~~------------------------------~----~~~~~~~-~~~~i~~~~~~~~~~~~~---~d  193 (403)
                      -.||..      ..                              +    .++..+. |...|.+..|-..|..++   .|
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence            999961      11                              0    1333455 777788888887777666   59


Q ss_pred             CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCC
Q 015650          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ  271 (403)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~  271 (403)
                      .+..+||.++++.+..+.+|......++-+|..+  ++++ .+.|.+.++||++.  ..+..+++|...|+++.|..+.+
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr--LVvT-sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~  370 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQR--LVVT-SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR  370 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCCcce--EEEE-eccCceeEeccchhhcceeeeecccccceeEEEEecCCc
Confidence            9999999999999999999999888888777654  4444 45899999999996  55677999999999999987764


Q ss_pred             EEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCC
Q 015650          272 LLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT  350 (403)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  350 (403)
                       +++|+.|.+ |+|||+++. .++.+++   ...+++.++.+..+.+|+.--++..|++||++-... .++         
T Consensus       371 -vVSgSDDrT-vKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRl---------  435 (481)
T KOG0300|consen  371 -VVSGSDDRT-VKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARL---------  435 (481)
T ss_pred             -eeecCCCce-EEEeeeccccCcceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccC---------
Confidence             789999999 999999875 4677777   457899999998888999988999999999987652 111         


Q ss_pred             CcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC--CEEEEEccC
Q 015650          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK--NTVVILGMD  401 (403)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~--~~l~~~~~d  401 (403)
                                   |        -..-++|..-|++++|..+-  .-|++++-|
T Consensus       436 -------------P--------rtsRqgHrRMV~c~AW~eehp~cnLftcGFD  467 (481)
T KOG0300|consen  436 -------------P--------RTSRQGHRRMVTCCAWLEEHPACNLFTCGFD  467 (481)
T ss_pred             -------------C--------cccccccceeeeeeeccccCccccccccccc
Confidence                         1        11135667778889997653  445555544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=4.9e-24  Score=189.77  Aligned_cols=267  Identities=16%  Similarity=0.251  Sum_probs=213.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEE-EeeeC-CeEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRC-NILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~~s~~~d~~~~~  155 (403)
                      ..+.+|...|..+++.+.. +++.++ |+++++|+-...+......+. ++...+.. ++|.+ +.-.++.++.|     
T Consensus         8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D-----   80 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMD-----   80 (745)
T ss_pred             EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeeccc-----
Confidence            5678999999998887655 566666 667999997655544334555 44444443 66653 44457888888     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      +.|.+|...+..++..++ |+..|.++....++.++.  .|.++++|-.  +++...+++|...+..+..-|.+  .+ +
T Consensus        81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~-v  155 (745)
T KOG0301|consen   81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TY-V  155 (745)
T ss_pred             ceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC--cE-E
Confidence            999999999999999999 999999999999998555  6999999975  57777799999999988887776  23 3


Q ss_pred             eeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                      + |+.|.+|++|.- ....+++.+|...|+.+++-+++. ++++++||. |++|++ +|+++.++.+  |.+-|.++...
T Consensus       156 T-gsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~  228 (745)
T KOG0301|consen  156 T-GSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMA  228 (745)
T ss_pred             e-ccCcceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEec
Confidence            3 678999999986 666788999999999999998765 678999999 999998 8899888886  78999999988


Q ss_pred             CCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~  392 (403)
                      ++++.++++++|++++||+..  +.                                   ...++++.-.++++.+-++|
T Consensus       229 ~~~~~Ivs~gEDrtlriW~~~--e~-----------------------------------~q~I~lPttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  229 LSDGLIVSTGEDRTLRIWKKD--EC-----------------------------------VQVITLPTTSIWSAKVLLNG  271 (745)
T ss_pred             CCCCeEEEecCCceEEEeecC--ce-----------------------------------EEEEecCccceEEEEEeeCC
Confidence            889999999999999999988  31                                   33466666678777776666


Q ss_pred             CEEEEEccCC
Q 015650          393 NTVVILGMDG  402 (403)
Q Consensus       393 ~~l~~~~~dG  402 (403)
                      . |++|+.||
T Consensus       272 D-Ivvg~SDG  280 (745)
T KOG0301|consen  272 D-IVVGGSDG  280 (745)
T ss_pred             C-EEEeccCc
Confidence            5 77788887

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.5e-24  Score=169.90  Aligned_cols=249  Identities=15%  Similarity=0.184  Sum_probs=195.1

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-EEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY  153 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~  153 (403)
                      +++-..|.+.|..+...--|+.||+++ |+.|+||.+++..+ .+..+|. +|..++..+.|..  -+.+|++++.|   
T Consensus         4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYD---   79 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYD---   79 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecC---
Confidence            456678999999999988999999998 55599999987765 5567787 9999999999965  68999999999   


Q ss_pred             CCceEEEEECCCCceeEEEe---cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCc---eeeeEeeccCCCceeEEE
Q 015650          154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAV  222 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~  222 (403)
                        |.|.||.-++++-.+...   |...|++++|.|.  |..|+   +||.|.+.+.+..   ...+....|.-.+..+++
T Consensus        80 --gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   80 --GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             --ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence              999999988885444333   8999999999996  44444   6999999988753   223344678888888999


Q ss_pred             eeCCCe------------EEEEeeCCccCeEEEEEccC---CceeEEeecCCceEEEEEcCCC----CEEEEEeCCCcEE
Q 015650          223 SQGVGS------------LVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDG----QLLATSSTKGTLV  283 (403)
Q Consensus       223 ~~~~~~------------~~~~~~g~~d~~i~v~d~~~---~~~~~~~~~~~~i~~~~~sp~g----~~l~s~~~dg~~i  283 (403)
                      .|..-.            .-+++ |..|..|+||+...   ....++.+|.+.|+.++|.|.-    .+||+++.||+ |
T Consensus       158 apa~~~g~~~~~~~~~~~krlvS-gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-v  235 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVS-GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-V  235 (299)
T ss_pred             cCcCCCccccccCcccccceeec-cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-E
Confidence            886211            22555 44899999999988   3445688999999999999953    58999999999 9


Q ss_pred             EEEEcCCC--cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          284 RIFNTLDG--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       284 ~iwd~~~~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      .||-....  .-..++.. .....++.+.||..|..|++++.|+.|.+|.-+..
T Consensus       236 iIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             EEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            99976521  11112211 13468999999999999999999999999986654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.7e-23  Score=189.75  Aligned_cols=242  Identities=15%  Similarity=0.181  Sum_probs=195.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      -.|...-+.|+|.|+|.+|++++.++ |++|+........ ..+. .+...+.+++...+  .+++++.+     ++|.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~-~~g~~v~~ia~~s~--~f~~~s~~-----~tv~~   80 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETID-ISGELVSSIACYSN--HFLTGSEQ-----NTVLR   80 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhh-ccCceeEEEeeccc--ceEEeecc-----ceEEE
Confidence            46888899999999999998887555 9999976542221 2232 25566666665444  67777777     99999


Q ss_pred             EECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       161 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      |.+..++.-..+. +.-++++++++.+|.+++   .|-.|++.++.+......+++|..++..+.++|.++  ++|++ +
T Consensus        81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~--fLAvs-s  157 (933)
T KOG1274|consen   81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN--FLAVS-S  157 (933)
T ss_pred             eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC--EEEEE-e
Confidence            9999887765555 788999999999999998   366899999999988999999999999999999887  44442 3


Q ss_pred             ccCeEEEEEccCCceeE-Ee-------ec-CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          237 QKGQVRVEHYASKRTKF-IM-------AH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       237 ~d~~i~v~d~~~~~~~~-~~-------~~-~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      -||.|++||+..+.+.. +.       .. ...+..++|+|+|..|+..+.|+. |++|+..+.+....++...+...+.
T Consensus       158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~  236 (933)
T KOG1274|consen  158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFS  236 (933)
T ss_pred             cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceE
Confidence            79999999999865422 11       11 345677899999888888888999 9999999999999998776666799


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .++|+|.|+|||+++.||.|.|||+++.+
T Consensus       237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~  265 (933)
T KOG1274|consen  237 DLQWSPNGKYIAASTLDGQILVWNVDTHE  265 (933)
T ss_pred             EEEEcCCCcEEeeeccCCcEEEEecccch
Confidence            99999999999999999999999999854

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=5.9e-25  Score=181.44  Aligned_cols=244  Identities=14%  Similarity=0.203  Sum_probs=197.2

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....++..|.+.|..|++.. +..+.+|+|++|+.|.++..   ..+++.  ....+..+..+.....+++++       
T Consensus       100 ~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~til--g~s~~~gIdh~~~~~~FaTcG-------  166 (433)
T KOG0268|consen  100 ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTIL--GKSVYLGIDHHRKNSVFATCG-------  166 (433)
T ss_pred             hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC---cceeee--ccccccccccccccccccccC-------
Confidence            33477899999999999987 77777888888999998753   224553  566777777777777888888       


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      ..|.|||.....+++.+. ....|.++.|+|-...++    +|+.|.+||++++.+++.+.. .-.-..++|+|...  .
T Consensus       167 e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeaf--n  243 (433)
T KOG0268|consen  167 EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAF--N  243 (433)
T ss_pred             ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCcccc--c
Confidence            469999999999999999 788899999999765444    599999999999988877643 23346789999433  2


Q ss_pred             EEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          231 LVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      ++ ++++|..++.||++.  ..+....+|.+.|.++.|+|.|+-+++|+.|.+ |+||.+..+.....+... -...|.+
T Consensus       244 F~-~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~  320 (433)
T KOG0268|consen  244 FV-AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFC  320 (433)
T ss_pred             ee-eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeE
Confidence            33 357999999999998  556778899999999999999999999999999 999999877654444322 2357999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      +.||.|.+++++|++|+.|++|...-.+..
T Consensus       321 Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  321 VKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             EEEeccccEEEecCCCcceeeeecchhhhc
Confidence            999999999999999999999998766543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1e-23  Score=188.31  Aligned_cols=283  Identities=13%  Similarity=0.205  Sum_probs=221.8

Q ss_pred             ccccCCCCCCeEEEEEcCC-----------CCEEEEEc-CCcEEEEEcCCC--eeEEEEec-c-----------------
Q 015650           78 ESTSSSPPPTLLHISFNQD-----------HGCFAAGT-DHGFRIYNCDPF--REIFRRDF-E-----------------  125 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d-----------~~~l~~~~-~~~i~iw~~~~~--~~~~~~~~-~-----------------  125 (403)
                      .....-|...|+.+.--|-           ...+++++ |++||+|+++..  ..++.+.+ .                 
T Consensus       362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~  441 (1080)
T KOG1408|consen  362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH  441 (1080)
T ss_pred             eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence            3556668888888876551           12355555 777999998641  11111100 0                 


Q ss_pred             --------------cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecC---c
Q 015650          126 --------------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---R  187 (403)
Q Consensus       126 --------------~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~---~  187 (403)
                                    -+...++.+++.+|++..|++|++.     |+++||++..-+....++ |+..|.++.|+..   .
T Consensus       442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~  516 (1080)
T KOG1408|consen  442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN  516 (1080)
T ss_pred             hccCCcccccchhhcCcccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence                          1345678999999999999999999     999999999988888888 9999999999863   4


Q ss_pred             eEEE---ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEee-----
Q 015650          188 IIVV---LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMA-----  256 (403)
Q Consensus       188 ~~~~---~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~-----  256 (403)
                      ++++   -|.-|.+||... -.+++++.+|...|+.+.|.-.+-+.-+++.| .|..|. |+...  .....+..     
T Consensus       517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscG-ADksim-Fr~~qk~~~g~~f~r~t~t~  594 (1080)
T KOG1408|consen  517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG-ADKSIM-FRVNQKASSGRLFPRHTQTL  594 (1080)
T ss_pred             HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEecc-Cchhhh-eehhccccCceecccccccc
Confidence            5666   378899999865 46778899999999999998887555555546 566554 34332  11222222     


Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC-CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       257 ~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      .+..++.|+..|..+++++++.|.. |+|||+++++..+.|++. .|.+..-.+...|.|-||++.+.|.++.++|+.++
T Consensus       595 ~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  595 SKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             ccceEEEeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence            2456899999999999999999999 999999999999999874 24577888999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      +.                                   +++..+|.+.|+.+.|.+|-+.|++++.||.
T Consensus       674 Ec-----------------------------------vA~m~GHsE~VTG~kF~nDCkHlISvsgDgC  706 (1080)
T KOG1408|consen  674 EC-----------------------------------VAQMTGHSEAVTGVKFLNDCKHLISVSGDGC  706 (1080)
T ss_pred             hh-----------------------------------hhhhcCcchheeeeeecccchhheeecCCce
Confidence            95                                   5667888999999999999999999999983

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.1e-25  Score=201.04  Aligned_cols=240  Identities=18%  Similarity=0.254  Sum_probs=201.9

Q ss_pred             cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEec
Q 015650          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR  185 (403)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~  185 (403)
                      .+++|+....  .       .|...+.++........+++|+.+     ..+-+|.+..-..+..+. |..+|.++.|+.
T Consensus        15 ~Lr~~~~~~~--~-------~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hespIeSl~f~~   80 (825)
T KOG0267|consen   15 KLRVWDTREF--V-------AHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHESPIESLTFDT   80 (825)
T ss_pred             ccccccchhh--h-------hhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCCcceeeecCc
Confidence            3778874321  1       355555555555667889999988     888899988877777777 999999999999


Q ss_pred             CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc-CCceeEEeecCCce
Q 015650          186 DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRI  261 (403)
Q Consensus       186 ~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~-~~~~~~~~~~~~~i  261 (403)
                      +..+++   .+|+|++||++..+.++++.+|...+..+.|+|.+.  |. ..|+.|+.+++||.+ .++...+.+|...+
T Consensus        81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~--~~-a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv  157 (825)
T KOG0267|consen   81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE--FF-ASGSTDTDLKIWDIRKKGCSHTYKSHTRVV  157 (825)
T ss_pred             chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE--Ee-ccccccccceehhhhccCceeeecCCccee
Confidence            988888   589999999999999999999999999999999876  44 458899999999999 47888888999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650          262 ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~  341 (403)
                      .++.|+|+|++++.++.|.. ++|||+..|+.+.+|..  |.+.+.++.|+|..-++++|+.|++|++||+++.+.+.  
T Consensus       158 ~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~--  232 (825)
T KOG0267|consen  158 DVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS--  232 (825)
T ss_pred             EEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEee--
Confidence            99999999999999999999 99999999999999996  77899999999999999999999999999999877321  


Q ss_pred             CCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650          342 EPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                                                       +....-..|.+++|.||+..+++|..+
T Consensus       233 ---------------------------------s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  233 ---------------------------------SGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ---------------------------------ccCCccCCceeeeecCCceeeecCchh
Confidence                                             112223467788999999988887653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=3.5e-23  Score=166.60  Aligned_cols=282  Identities=13%  Similarity=0.180  Sum_probs=206.0

Q ss_pred             CccccCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEcCCCee------------EEEEecccCcceeEEEEeeeC-Ce
Q 015650           77 AESTSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFRE------------IFRRDFERGGGIGVVEMLFRC-NI  141 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~-d~~~l~~~~~~~-i~iw~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~-~~  141 (403)
                      ...+...|.+.|+++.+.+ .|+++++|+.++ |.|||++....            ...+.-+.+|...|..+.|-| |.
T Consensus        35 d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   35 DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            3456678999999999977 689999998555 99999964331            111122246777888888766 44


Q ss_pred             EEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc---eEEE---ecCeEEEEEcCCceeeeEeeccCC
Q 015650          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVV---LEQKIFVYNFADLKLLHQIETIAN  215 (403)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~---~d~~i~i~d~~~~~~~~~~~~~~~  215 (403)
                      -.+.+++-|     .++++||..+-+....|+.++.|..-+++|-.   -+++   -+-+|++.|+..|..-+++.+|.+
T Consensus       115 GmFtssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~  189 (397)
T KOG4283|consen  115 GMFTSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD  189 (397)
T ss_pred             ceeeccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence            566777778     99999999999999999999999999999842   2333   266899999999999999999999


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeE--------------EeecCCceEEEEEcCCCCEEEEEeCC
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKF--------------IMAHDSRIACFALTQDGQLLATSSTK  279 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~--------------~~~~~~~i~~~~~sp~g~~l~s~~~d  279 (403)
                      .|..+.|+|..+  ++.++|+.||.|++||++.  +....              -..|.+.+..++|..+|.++++++.|
T Consensus       190 ~vlaV~Wsp~~e--~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd  267 (397)
T KOG4283|consen  190 GVLAVEWSPSSE--WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD  267 (397)
T ss_pred             ceEEEEeccCce--eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence            999999999876  4444577999999999986  23222              23577889999999999999999999


Q ss_pred             CcEEEEEEcCCCcEEEEEec-CCCcc----cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650          280 GTLVRIFNTLDGTLLQEVRR-GADRA----EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (403)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~-~~~~~----~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (403)
                      .. +++|+..+|+....-.+ ..|..    .+. +. +-+...++---.++.+.++.+-.+..                 
T Consensus       268 ~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~-----------------  327 (397)
T KOG4283|consen  268 DR-IRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSF-----------------  327 (397)
T ss_pred             cc-eEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceE-----------------
Confidence            99 99999988754221111 00111    111 22 33444444444567788887777763                 


Q ss_pred             ccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                        +..+..|-..+.+.+|-|+=+.+.+|..||.
T Consensus       328 ------------------ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~n  358 (397)
T KOG4283|consen  328 ------------------VRRLSTHLKRINCAAYRPDFEQCFTGDMNGN  358 (397)
T ss_pred             ------------------EEeeecccceeeEEeecCchhhhhccccCCc
Confidence                              3345555567777888888787887777763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.7e-24  Score=191.28  Aligned_cols=219  Identities=16%  Similarity=0.203  Sum_probs=185.2

Q ss_pred             CCeEEEeeCCCCCCCCCceEEEEECCCCc------eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc--ee
Q 015650          139 CNILALVGGGPDPQYPLNKVMIWDDHQSR------CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL--KL  206 (403)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~i~iwd~~~~~------~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~--~~  206 (403)
                      +++.+|+++++|     |.|++|++....      .+..++ |...|.++....+++.++   .|-+|++|+...+  -+
T Consensus        35 ~~~ryLfTgGRD-----g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c  109 (735)
T KOG0308|consen   35 PNGRYLFTGGRD-----GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC  109 (735)
T ss_pred             CCCceEEecCCC-----ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence            456689999999     999999976532      355666 889999999988886655   5899999998876  57


Q ss_pred             eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----------eEEe-ecCCceEEEEEcCCCCEEE
Q 015650          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------KFIM-AHDSRIACFALTQDGQLLA  274 (403)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----------~~~~-~~~~~i~~~~~sp~g~~l~  274 (403)
                      +.++..|.+.|.++++....+ .++++ |+-|+.|.+||+..+..           ..+. ++...|++++.++.|..|+
T Consensus       110 ~stir~H~DYVkcla~~ak~~-~lvaS-gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv  187 (735)
T KOG0308|consen  110 MSTIRTHKDYVKCLAYIAKNN-ELVAS-GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV  187 (735)
T ss_pred             HhhhhcccchheeeeecccCc-eeEEe-cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence            888899999999998843333 24554 55999999999996421           1122 7888999999999999999


Q ss_pred             EEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (403)
Q Consensus       275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (403)
                      +|+..+. |++||.++++.+..+++  |...|..+..++||..+++++.||+|++||+...+.                 
T Consensus       188 sGgtek~-lr~wDprt~~kimkLrG--HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-----------------  247 (735)
T KOG0308|consen  188 SGGTEKD-LRLWDPRTCKKIMKLRG--HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-----------------  247 (735)
T ss_pred             ecCcccc-eEEeccccccceeeeec--cccceEEEEEcCCCCeEeecCCCceEEeeeccccce-----------------
Confidence            9999999 99999999999999996  788999999999999999999999999999998773                 


Q ss_pred             ccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                                        +..+..|++.|+.+..+|+-..+++|+.||
T Consensus       248 ------------------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~  277 (735)
T KOG0308|consen  248 ------------------LATYIVHKEGVWALQSSPSFTHVYSGGRDG  277 (735)
T ss_pred             ------------------eeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence                              556888998999999999999999999998

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=3.6e-24  Score=173.44  Aligned_cols=208  Identities=14%  Similarity=0.231  Sum_probs=175.0

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC------------C------ceeEEEe-cCCceeEEEEecCc
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------------S------RCIGELS-FRSEVRSVKLRRDR  187 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~------------~------~~~~~~~-~~~~i~~~~~~~~~  187 (403)
                      .|...+.+.+|++||.++++|+.|     ..|+|.|++.            +      -.++++- |..+|+++.|+|..
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            688999999999999999999999     9999999862            1      1345555 89999999999999


Q ss_pred             eEEE---ecCeEEEEEcCCcee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE----Eeec
Q 015650          188 IIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF----IMAH  257 (403)
Q Consensus       188 ~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~----~~~~  257 (403)
                      .+++   -|++|++||+.....   .+.+ ....++.++.|+|.|+.+++   |.+...+++||+.+-+...    -..|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllv---gTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLV---GTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEE---ecCCCceeEEeccceeEeeecCccccc
Confidence            8888   399999999976432   2233 23567889999999985544   4477899999999855433    3578


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .+.|+++.+++.|++.++++.||. |+|||--+++|+.++........|.+..|..+|++|++.+.|..+++|.+.++..
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            999999999999999999999999 9999999999999998764556899999999999999999999999999999998


Q ss_pred             CCCCCCC
Q 015650          338 SARSEPR  344 (403)
Q Consensus       338 ~~~~~~~  344 (403)
                      +..+.+.
T Consensus       340 l~~YtGA  346 (430)
T KOG0640|consen  340 LKEYTGA  346 (430)
T ss_pred             EEEEecC
Confidence            7776643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.2e-24  Score=168.08  Aligned_cols=235  Identities=16%  Similarity=0.235  Sum_probs=187.7

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC---ceeEEEe-cCCceeEEEEec--CceEEE---ecCeEE
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRR--DRIIVV---LEQKIF  197 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~---~~~~~~~-~~~~i~~~~~~~--~~~~~~---~d~~i~  197 (403)
                      .|...|......--+..|++++.|     ++|+|+.++.+   +++.++. |.++|..++|..  -|.+|+   .||.|.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            466666666666668889999999     99999998775   4566777 999999999976  688888   599999


Q ss_pred             EEEcCCce--eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC----ceeEEeecCCceEEEEEcCC--
Q 015650          198 VYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQD--  269 (403)
Q Consensus       198 i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~~i~~~~~sp~--  269 (403)
                      ||.-.+++  .......|...+..+++.|++-+++|+| ++.||.|.|.+.+..    ..+....|.-.|++++|.|.  
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            99987763  3455677889999999999999999988 458999999998874    23456789999999999985  


Q ss_pred             -C-----------CEEEEEeCCCcEEEEEEcCCCc--EEEEEecCCCcccEEEEEeCCCC----CEEEEEeCCCcEEEEE
Q 015650          270 -G-----------QLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVHVFN  331 (403)
Q Consensus       270 -g-----------~~l~s~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~s~d~----~~l~s~~~dg~v~iwd  331 (403)
                       |           +.|++|+.|.. |+||+..+++  ..+++..  |...|+.++|.|.-    .+||+++.||+|.||.
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence             4           67999999999 9999988763  2334554  88999999999965    4799999999999999


Q ss_pred             eecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      .+...                                +.|...-++.....+..+.||..|+.|++++.|.
T Consensus       240 ~~~e~--------------------------------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  240 KDEEY--------------------------------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             ecCcc--------------------------------CcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence            88332                                1222222333345788899999999999998874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=9.2e-22  Score=173.66  Aligned_cols=256  Identities=15%  Similarity=0.150  Sum_probs=180.3

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (403)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~  175 (403)
                      .++++++ ++.|++||+.+++..  ..+. .+ ..+..+.|++++..+ +++..+     +.|++||..+++.+..+...
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~--~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~   72 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVT--RTFP-VG-QRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSG   72 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceE--EEEE-CC-CCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCC
Confidence            4677776 555999999877654  4444 22 335678889887654 566666     89999999999888777644


Q ss_pred             CceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650          176 SEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~  251 (403)
                      ..+..++|+|++..++    .++.|++||+++.+.+..+... .....++++|+++.+++.  ......+.+||.++...
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~--~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNT--SETTNMAHFIDTKTYEI  149 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEE--ecCCCeEEEEeCCCCeE
Confidence            4467889999987654    2789999999988877766532 335678999988754433  22334677889887655


Q ss_pred             eEEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcEEEEEecCC---C--cccEEEEEeCCCCCEEEEE-eCC
Q 015650          252 KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGA---D--RAEIYSLAFSSNAQWLAVS-SDK  324 (403)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~---~--~~~v~~l~~s~d~~~l~s~-~~d  324 (403)
                      .........+.+++|+|+|++|+.++ .++. |++||+++++.+..+....   +  ......++|+|++++++++ +.+
T Consensus       150 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       150 VDNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             EEEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence            43333344567899999999886554 5888 9999999998877665211   1  1124578999999986544 567


Q ss_pred             CcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEc-cCC
Q 015650          325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDG  402 (403)
Q Consensus       325 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~-~dG  402 (403)
                      +.|.+||+++++.                                   .. ...+...+..++|+|+|++|++++ .+|
T Consensus       229 ~~i~v~d~~~~~~-----------------------------------~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~  271 (300)
T TIGR03866       229 NRVAVVDAKTYEV-----------------------------------LD-YLLVGQRVWQLAFTPDEKYLLTTNGVSN  271 (300)
T ss_pred             CeEEEEECCCCcE-----------------------------------EE-EEEeCCCcceEEECCCCCEEEEEcCCCC
Confidence            7899999987662                                   11 112345688899999999999875 355

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.1e-22  Score=154.17  Aligned_cols=245  Identities=12%  Similarity=0.137  Sum_probs=186.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEE---EEecccCcceeEEEEeeeC----CeEEEeeCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRC----NILALVGGGPD  150 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~----~~~~~~s~~~d  150 (403)
                      +-...|.+.|.|.+|+|+|++|++|+ |+.|++...+......   ...+. -|...|..++|-.    .+..+++++..
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~gag  161 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGAG  161 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCCC
Confidence            44567899999999999999999999 5558887664332211   12233 4778899999854    35566666542


Q ss_pred             CCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc-------CCCcee
Q 015650          151 PQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI-------ANPKGL  219 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~  219 (403)
                          +..|++-|..+|+..+.+. |.+.|.++. +-++..++   .|.+|++||++-..++.++...       ...+..
T Consensus       162 ----dc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa  236 (350)
T KOG0641|consen  162 ----DCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA  236 (350)
T ss_pred             ----cceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence                2778888999999999998 888888764 33455555   4899999999988888776431       134566


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC--cEEEE
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQE  296 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~  296 (403)
                      +++.|.++  ++++ |..|....+||++.++ ++.+..|...|.|+.|+|...||++++.|.. |++=|+...  ..+..
T Consensus       237 v~vdpsgr--ll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~~  312 (350)
T KOG0641|consen  237 VAVDPSGR--LLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELPI  312 (350)
T ss_pred             EEECCCcc--eeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCce
Confidence            77777765  5554 7789999999999955 5778899999999999999999999999999 999998632  11122


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      +....|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus       313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            2222377888899999999999999999999999764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=6.2e-22  Score=170.35  Aligned_cols=268  Identities=11%  Similarity=0.114  Sum_probs=199.3

Q ss_pred             ccCCCCCCeEEEEEcC--CCCEEEEEcCCc---EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCC
Q 015650           80 TSSSPPPTLLHISFNQ--DHGCFAAGTDHG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQY  153 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~--d~~~l~~~~~~~---i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~  153 (403)
                      ++......|.|++|++  .|.+|+.-+++.   +.|||...+...  .... ..+..+....|+|.. ..+++.+.    
T Consensus       149 V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~--~~vk-~sne~v~~a~FHPtd~nliit~Gk----  221 (626)
T KOG2106|consen  149 VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL--GPVK-TSNEVVFLATFHPTDPNLIITCGK----  221 (626)
T ss_pred             eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc--Ccce-eccceEEEEEeccCCCcEEEEeCC----
Confidence            3445677899999987  356776665433   899998765544  2232 355678888898854 45566665    


Q ss_pred             CCceEEEEECCCCceeEEE---e--cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC
Q 015650          154 PLNKVMIWDDHQSRCIGEL---S--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~---~--~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (403)
                        +.+.+|+.+.+.+.+..   +  .+..|.+++|.++|..+.  ++|.|.||+..+.+..+....|.+.+.++++-.++
T Consensus       222 --~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G  299 (626)
T KOG2106|consen  222 --GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG  299 (626)
T ss_pred             --ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc
Confidence              89999999988766543   3  346799999999999998  68999999998877777777999999999999887


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCce-----------------------------------------eEEeecCCceEEEE
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKRT-----------------------------------------KFIMAHDSRIACFA  265 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~~-----------------------------------------~~~~~~~~~i~~~~  265 (403)
                      .   +++ |..|..|..||-.-++.                                         ....+|......++
T Consensus       300 t---llS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla  375 (626)
T KOG2106|consen  300 T---LLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA  375 (626)
T ss_pred             c---Eee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence            5   444 67999999998432111                                         12345666777788


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCC
Q 015650          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS  345 (403)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  345 (403)
                      .+|+...+++++.|+. +++|+  ..+++-+..   -..++.++.|+|.| .+|.|...|...+.|.++..         
T Consensus       376 ~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~---------  439 (626)
T KOG2106|consen  376 THPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD---------  439 (626)
T ss_pred             cCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccce---------
Confidence            8888888888888888 88887  444444333   23577888888888 88888888888888887744         


Q ss_pred             CCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                                 ..+++...+.+++++|+|+|.+||+|+.|+.
T Consensus       440 ---------------------------lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~  470 (626)
T KOG2106|consen  440 ---------------------------LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH  470 (626)
T ss_pred             ---------------------------eEEEEecCCceEEEEEcCCCCEEEEecCCCe
Confidence                                       3334444678999999999999999999974

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=9.3e-24  Score=181.44  Aligned_cols=237  Identities=11%  Similarity=0.211  Sum_probs=203.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      ...+-|.++.+.|||+.|++|++.. +.|||+......+...+. ...-.+.+++.++|...++++..|     |.|.||
T Consensus       463 ~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsd-----GnI~vw  536 (705)
T KOG0639|consen  463 NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSD-----GNIAVW  536 (705)
T ss_pred             CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccC-----CcEEEE
Confidence            3456788999999999999998654 999999877666555554 445577889999999988888888     999999


Q ss_pred             ECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      |+.+...++.|+ |...+.||.+++||..+.   .|++|+.||+++++.++... ....|..+..+|.++.+.+   |.+
T Consensus       537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlav---GMe  612 (705)
T KOG0639|consen  537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAV---GME  612 (705)
T ss_pred             EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceee---ecc
Confidence            999999999999 999999999999999888   59999999999988766543 3456778888888885444   558


Q ss_pred             cCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 015650          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW  317 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~  317 (403)
                      ++.+.|..........+..|+.-|.++.|.+.|+++++.+.|.. +..|...-|..+...+   ..+.|.++.+|.|.++
T Consensus       613 ns~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddky  688 (705)
T KOG0639|consen  613 NSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKY  688 (705)
T ss_pred             cCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceE
Confidence            88999988888888888999999999999999999999999999 9999999898887776   5689999999999999


Q ss_pred             EEEEeCCCcEEEEEee
Q 015650          318 LAVSSDKGTVHVFNLK  333 (403)
Q Consensus       318 l~s~~~dg~v~iwd~~  333 (403)
                      |++|+.|..-.+|.+.
T Consensus       689 IVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  689 IVTGSGDKKATVYEVI  704 (705)
T ss_pred             EEecCCCcceEEEEEe
Confidence            9999999998888763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=2e-21  Score=171.51  Aligned_cols=235  Identities=15%  Similarity=0.166  Sum_probs=171.6

Q ss_pred             CeEEEEEcCCCCEE-EEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEEC
Q 015650           87 TLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        87 ~i~~i~~s~d~~~l-~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~  163 (403)
                      .+.+++|+|+++.+ +++. ++.|++|+..+++..  ..+. .+ ..+..+.+++++..+ +++..+     +.|++||+
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~-~~-~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~  102 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP-SG-PDPELFALHPNGKILYIANEDD-----NLVTVIDI  102 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc-CC-CCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence            46789999999876 4555 455999999876654  3443 12 224567788887654 455556     89999999


Q ss_pred             CCCceeEEEecCCceeEEEEecCceEEEe---c-CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC
Q 015650          164 HQSRCIGELSFRSEVRSVKLRRDRIIVVL---E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (403)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (403)
                      .+++.+..+.....+.+++|+|++.+++.   + ..+.+||.++++....+... .....+++++++..+++.  +..++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~~~  179 (300)
T TIGR03866       103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVS--SEIGG  179 (300)
T ss_pred             CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEE--cCCCC
Confidence            99888887775566789999999988772   2 35778899888776555332 344678899988755443  34689


Q ss_pred             eEEEEEccCCce-eEEeecC-------CceEEEEEcCCCCEEEEE-eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          240 QVRVEHYASKRT-KFIMAHD-------SRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       240 ~i~v~d~~~~~~-~~~~~~~-------~~i~~~~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      .|++||+++.+. ..+..+.       .....++|+|++++++.+ +.++. |.+||+++++.+..+.   +...+.+++
T Consensus       180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~---~~~~~~~~~  255 (300)
T TIGR03866       180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLL---VGQRVWQLA  255 (300)
T ss_pred             EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEE---eCCCcceEE
Confidence            999999988654 3332221       123568899999986554 44667 9999999988877665   335789999


Q ss_pred             eCCCCCEEEEE-eCCCcEEEEEeecCCC
Q 015650          311 FSSNAQWLAVS-SDKGTVHVFNLKVNSG  337 (403)
Q Consensus       311 ~s~d~~~l~s~-~~dg~v~iwd~~~~~~  337 (403)
                      |+|+|++|+++ +.+|.|++||+++++.
T Consensus       256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       256 FTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            99999999886 4689999999999874

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.1e-22  Score=162.60  Aligned_cols=226  Identities=14%  Similarity=0.229  Sum_probs=186.8

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCc---eEEE--ecCeEEEEE
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR---IIVV--LEQKIFVYN  200 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~---~~~~--~d~~i~i~d  200 (403)
                      .|...+++++.  ++.++++|+.|     -+|+|||+.+...+..+- |.+.|+++.|.+..   .++.  .||.|.+|+
T Consensus        41 aH~~sitavAV--s~~~~aSGssD-----etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   41 AHAGSITALAV--SGPYVASGSSD-----ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             ccccceeEEEe--cceeEeccCCC-----CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            68888888877  57799999999     999999999988888776 99999999999876   4454  599999999


Q ss_pred             cCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC
Q 015650          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (403)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg  280 (403)
                      ....+++..++.|.+.|+.++++|.++ +.+.. | .|+.+++|++-.++......-....+.+.|+|.|.+++.+..++
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsV-g-~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGK-LALSV-G-GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCc-eEEEE-c-CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence            999999999999999999999999986 23333 3 79999999998877665555455556699999999999988876


Q ss_pred             cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccc
Q 015650          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK  360 (403)
Q Consensus       281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (403)
                        |-||.+.+......+.   .+..+.++.|- ++..|++|++|+.|.+||.+....                       
T Consensus       191 --i~i~q~d~A~v~~~i~---~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~-----------------------  241 (362)
T KOG0294|consen  191 --IDIYQLDNASVFREIE---NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP-----------------------  241 (362)
T ss_pred             --EEEEecccHhHhhhhh---ccccceeeeec-CCceEEEecCCceEEEeccCCCcc-----------------------
Confidence              8999998888877776   33567778775 677899999999999999998664                       


Q ss_pred             ccccceeeeeeeeEEEEEeCCCceEEEe--ccCCCEEEEEccCCC
Q 015650          361 GVLPKYFSSEWSVAQFRLVEGSPYIVAF--GHQKNTVVILGMDGR  403 (403)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f--s~d~~~l~~~~~dG~  403 (403)
                                  ...+..|+.+|-.+.+  .|++.+|++++.||.
T Consensus       242 ------------~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  242 ------------LTEFLAHENRVKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             ------------ceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence                        3346777777777764  567899999999984

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=2.3e-22  Score=182.70  Aligned_cols=185  Identities=17%  Similarity=0.183  Sum_probs=150.5

Q ss_pred             CceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe---eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC
Q 015650          176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~  249 (403)
                      ..+++++.++-|.+.+   +.|.|-+|+++.|-....+   ..|..++..+++..-++  .++++| .+|.+.+||...+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~--~~vsa~-~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR--LLVSAG-ADGILKFWDFKKK  525 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc--eEEEcc-CcceEEEEecCCc
Confidence            4567777788777776   5889999999998777777   46777777777655444  445444 7999999999987


Q ss_pred             ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650          250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (403)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~i  329 (403)
                      ....--.-...+.++..+.....++.+..|-. |+++|+.+.+.++.|.+  |.+.|++++|||||++|++++.|++|++
T Consensus       526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRT  602 (910)
T ss_pred             ceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEE
Confidence            75544445667888999988889999999998 99999999999999997  7799999999999999999999999999


Q ss_pred             EEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      ||+.++..+                                   - .-.-+.....+.|||.|.+||++-.|+
T Consensus       603 wDlpt~~lI-----------------------------------D-~~~vd~~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  603 WDLPTGTLI-----------------------------------D-GLLVDSPCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             EeccCccee-----------------------------------e-eEecCCcceeeEECCCCCEEEEEEecC
Confidence            999999841                                   1 112245677899999999999998774

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=9.9e-23  Score=173.34  Aligned_cols=235  Identities=20%  Similarity=0.302  Sum_probs=188.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      ..|...|.+++.++||+|||+|. |..|.||+.++.+.+  +.+. +|...|.+++|.....-+++++.|     ..|++
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv--~~~~-ghr~~V~~L~fr~gt~~lys~s~D-----rsvkv  270 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV--KVFK-GHRGAVSSLAFRKGTSELYSASAD-----RSVKV  270 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh--hccc-ccccceeeeeeecCccceeeeecC-----CceEE
Confidence            38999999999999999999998 555999999988776  5676 899999999998888888888888     99999


Q ss_pred             EECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       161 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      |++.....+.++- |+..|.++....-.+.+.   .|.++++|++.. +....+.++.+.+.+++|-.+..   +++ |+
T Consensus       271 w~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H---fvs-GS  345 (479)
T KOG0299|consen  271 WSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH---FVS-GS  345 (479)
T ss_pred             EehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc---eee-cc
Confidence            9999988888777 999999999887777766   499999999954 33345667788888898876653   443 77


Q ss_pred             ccCeEEEEEccCCceeEEe--ec-----------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC----cEEEEEec
Q 015650          237 QKGQVRVEHYASKRTKFIM--AH-----------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRR  299 (403)
Q Consensus       237 ~d~~i~v~d~~~~~~~~~~--~~-----------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~  299 (403)
                      .+|.|.+|++..++.....  +|           ..+|++++..|...++|+|+.+|. |++|-+..+    +++..+. 
T Consensus       346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls-  423 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS-  423 (479)
T ss_pred             CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc-
Confidence            9999999999885543221  22           238999999999999999999999 999998877    4444554 


Q ss_pred             CCCcccEEEEEeCCCCCEEEEE-eCCCcEEEEEee
Q 015650          300 GADRAEIYSLAFSSNAQWLAVS-SDKGTVHVFNLK  333 (403)
Q Consensus       300 ~~~~~~v~~l~~s~d~~~l~s~-~~dg~v~iwd~~  333 (403)
                        -.+.|++|+|+++|+.|++| +....+--|-..
T Consensus       424 --~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  424 --LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             --cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence              45789999999999966555 455555555443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.4e-22  Score=177.78  Aligned_cols=291  Identities=16%  Similarity=0.196  Sum_probs=218.0

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe--EEEee-CCCC-
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVG-GGPD-  150 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s-~~~d-  150 (403)
                      .....+.+|++.|.+|...|.|.+|++|+++| |+||.+.++.++....+.    ..|.+++|+|..  ..|+. .+.. 
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d----~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD----SEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec----ceeEEEEecCCCCceeEEEEecCce
Confidence            34467899999999999999999999999666 999999999988555543    578888887742  12221 1111 


Q ss_pred             ----C---------------------CCCCceEEEEECCCC---c--eeEEEecCCceeEEEEecCceEEEe------cC
Q 015650          151 ----P---------------------QYPLNKVMIWDDHQS---R--CIGELSFRSEVRSVKLRRDRIIVVL------EQ  194 (403)
Q Consensus       151 ----~---------------------~~~~~~i~iwd~~~~---~--~~~~~~~~~~i~~~~~~~~~~~~~~------d~  194 (403)
                          +                     .++++.+..|.-...   +  ....+.|...|..+.|+..|.++++      ..
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence                0                     122355667754311   1  1234558999999999999999982      45


Q ss_pred             eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEE
Q 015650          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLL  273 (403)
Q Consensus       195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l  273 (403)
                      .|.|+++...+...-|.-..+.+..+.|+|....+++++    ...|++||+..+. ++.+......|..++++|.|..|
T Consensus       547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl  622 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL  622 (733)
T ss_pred             eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence            799999987766666666677888999999988777664    5789999998744 34455566789999999999999


Q ss_pred             EEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCc
Q 015650          274 ATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (403)
Q Consensus       274 ~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  352 (403)
                      +.|+.|+. +..||+.-. ++.++++.  |...+++++|++.-.+|++|+.||++.||.-.-...+....          
T Consensus       623 i~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp----------  689 (733)
T KOG0650|consen  623 ILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP----------  689 (733)
T ss_pred             EEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC----------
Confidence            99999999 999999754 55566664  78899999999999999999999999999765444211110          


Q ss_pred             ccccccccccccceeeeeeeeEEEEEeCCC----ceEEEeccCCCEEEEEccCCC
Q 015650          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGS----PYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~fs~d~~~l~~~~~dG~  403 (403)
                              -++|        +..+++|...    |..+.|+|..-+|+++++||+
T Consensus       690 --------liVP--------lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t  728 (733)
T KOG0650|consen  690 --------LIVP--------LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT  728 (733)
T ss_pred             --------ceEe--------eeeccCceeecccceEeecccCCCceEEecCCCce
Confidence                    0222        4456666644    777899999999999999985

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=3.2e-22  Score=163.09  Aligned_cols=241  Identities=13%  Similarity=0.162  Sum_probs=173.2

Q ss_pred             CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCC------------eeEEEEecccCcceeEEEEee-------eCCeEEEee
Q 015650           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPF------------REIFRRDFERGGGIGVVEMLF-------RCNILALVG  146 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~------------~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~s  146 (403)
                      -...+.|+|||..|.+-+ |+++++|++...            +......+.  ....|...+|       .|+..++++
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccceeee
Confidence            445679999999988877 777999998311            111112222  3445555555       356677888


Q ss_pred             CCCCCCCCCceEEEEECCCCceeEEEe---cCCc---eeEEEEecCceEEE--ecCeEEEEEc-CCceeeeEe-------
Q 015650          147 GGPDPQYPLNKVMIWDDHQSRCIGELS---FRSE---VRSVKLRRDRIIVV--LEQKIFVYNF-ADLKLLHQI-------  210 (403)
Q Consensus       147 ~~~d~~~~~~~i~iwd~~~~~~~~~~~---~~~~---i~~~~~~~~~~~~~--~d~~i~i~d~-~~~~~~~~~-------  210 (403)
                      .+++     .-|++||.-+|+....+.   |...   ..+++|+|||..++  ....|+++|+ +.|+....+       
T Consensus       129 ssr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k  203 (406)
T KOG2919|consen  129 SSRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK  203 (406)
T ss_pred             cccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence            8888     899999999999888776   4443   46899999998887  5789999999 555432221       


Q ss_pred             eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      .+..+-+.+++++|.....+ ++ |+....+-||.-.. +.+..+.+|.+.|+.++|.++|+.|++|......|..||++
T Consensus       204 ~gq~giisc~a~sP~~~~~~-a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  204 FGQKGIISCFAFSPMDSKTL-AV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ccccceeeeeeccCCCCcce-ee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence            12345567888999776543 43 45667777776665 55667789999999999999999999998744339999998


Q ss_pred             C-CcEEEEEecCCCcccEEE--EEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          290 D-GTLLQEVRRGADRAEIYS--LAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       290 ~-~~~~~~~~~~~~~~~v~~--l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      . +.++..+.++.. ..-..  ....|++++|++|+.||.|++||+++..+
T Consensus       282 ~~~~pv~~L~rhv~-~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  282 YSRDPVYALERHVG-DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             hccchhhhhhhhcc-CccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence            5 455666665322 12233  44568999999999999999999999553

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.1e-22  Score=169.38  Aligned_cols=265  Identities=12%  Similarity=0.130  Sum_probs=198.2

Q ss_pred             CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEE-ecCCceeEEE
Q 015650          105 DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-SFRSEVRSVK  182 (403)
Q Consensus       105 ~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~-~~~~~i~~~~  182 (403)
                      |.. +.+||+.++...  .+++++......++..- +..+++++...    ...|.+|.+......... .-+++|.+++
T Consensus        16 d~~~~~~~dl~TGt~~--~~ykg~~~a~~~sl~~l-~~~yllsaq~~----rp~l~vw~i~k~~~~~q~~v~Pg~v~al~   88 (476)
T KOG0646|consen   16 DPINCIVWDLRTGTSL--LQYKGSYLAQAASLTAL-NNEYLLSAQLK----RPLLHVWEILKKDQVVQYIVLPGPVHALA   88 (476)
T ss_pred             CCcceeEEecCCCcee--EEecCcccccchhhhhh-chhheeeeccc----CccccccccCchhhhhhhcccccceeeee
Confidence            444 999999988776  34441212111122111 11233333321    158999998776555533 3788999999


Q ss_pred             EecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC----------C
Q 015650          183 LRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----------K  249 (403)
Q Consensus       183 ~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~----------~  249 (403)
                      -+|+|.+++.   .+.|++|.+.+|+++..+..|-..++++.|+-|+..  +.+ |+.||.|.+|.+..          .
T Consensus        89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~--iiT-gskDg~V~vW~l~~lv~a~~~~~~~  165 (476)
T KOG0646|consen   89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH--IIT-GSKDGAVLVWLLTDLVSADNDHSVK  165 (476)
T ss_pred             cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE--EEe-cCCCccEEEEEEEeecccccCCCcc
Confidence            9999999993   689999999999999999999999999999988874  444 55999999998753          3


Q ss_pred             ceeEEeecCCceEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          250 RTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~--g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                      ....+..|.-+|+++...+.  ..+|++++.|.+ +++||+..+.++.++.   .+..+.+++.+|-++.+.+|+.+|.|
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~~~yiGt~~G~I  241 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAERVVYIGTEEGKI  241 (476)
T ss_pred             ceeeeccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEcccccEEEecCCcceE
Confidence            45667889999999988765  368999999999 9999999999999888   56899999999999999999999999


Q ss_pred             EEEEeecCCCCCCCCCCCCCCCCCccccccccccccc-ceeeeeeeeEEEEEeCC--CceEEEeccCCCEEEEEccCCC
Q 015650          328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP-KYFSSEWSVAQFRLVEG--SPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .+.++..-.....-                    +.. .+-...-.+.-+.+|++  .|++++.+-||..|++|++||.
T Consensus       242 ~~~~~~~~~~~~~~--------------------v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~  300 (476)
T KOG0646|consen  242 FQNLLFKLSGQSAG--------------------VNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK  300 (476)
T ss_pred             EeeehhcCCccccc--------------------ccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence            99998765531110                    000 00111112344667776  9999999999999999999984

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.5e-21  Score=171.36  Aligned_cols=277  Identities=13%  Similarity=0.191  Sum_probs=209.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      +...-.+..|.+|+|+.+.+.||.+..+ .|.||++... ..+...+.++....|-+++|.+.+..+ +.+.+     |.
T Consensus        19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLF-S~g~s-----g~   91 (691)
T KOG2048|consen   19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLF-SSGLS-----GS   91 (691)
T ss_pred             EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEE-eecCC-----ce
Confidence            4445567889999999999999999744 5999999763 334456665677889999999655544 44445     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeE--eeccCCCceeEEEeeCCCeEEE
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQ--IETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      |.-||+.+++.+..+. ..+.|++++.+|.+..++   -||.++.++...++....  +......+-++.|++++..  +
T Consensus        92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i  169 (691)
T KOG2048|consen   92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--I  169 (691)
T ss_pred             EEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--E
Confidence            9999999999999998 889999999999887777   478777777776655433  3333455666666666543  3


Q ss_pred             EeeCCccCeEEEEEccCCceeE-----Eee----cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC
Q 015650          232 VCPGLQKGQVRVEHYASKRTKF-----IMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~-----~~~----~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (403)
                      + +|+.||.|++||...+....     +..    ...-|.++.|-.++ .|++|...|+ |++||...+.+++.+..  |
T Consensus       170 ~-~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h  244 (691)
T KOG2048|consen  170 A-GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--H  244 (691)
T ss_pred             E-ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--h
Confidence            4 37799999999998855433     111    23347788887666 5889999999 99999999999999986  7


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeee-EEEEEeCC
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSV-AQFRLVEG  381 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  381 (403)
                      .+.|.+|+..+++.++++++.|+.|.-|...+.+.                                +|.. .+..+|..
T Consensus       245 ~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--------------------------------~wv~~~~r~~h~h  292 (691)
T KOG2048|consen  245 DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS--------------------------------EWVINSRRDLHAH  292 (691)
T ss_pred             hcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc--------------------------------ceeeeccccCCcc
Confidence            78999999999999999999999999999988873                                1322 23455566


Q ss_pred             CceEEEeccCCCEEEEEccCCC
Q 015650          382 SPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       382 ~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .+.+++..++  .|++|+.|++
T Consensus       293 dvrs~av~~~--~l~sgG~d~~  312 (691)
T KOG2048|consen  293 DVRSMAVIEN--ALISGGRDFT  312 (691)
T ss_pred             cceeeeeecc--eEEecceeeE
Confidence            6777776655  7888877753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=3.4e-22  Score=169.97  Aligned_cols=244  Identities=14%  Similarity=0.139  Sum_probs=180.4

Q ss_pred             CcceeEEEEeeeCCe-EEEeeCCCCCCCCCceEEEEECCCCc----------eeEEEe-cCCceeEEEEecC--ceEEE-
Q 015650          127 GGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSR----------CIGELS-FRSEVRSVKLRRD--RIIVV-  191 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~i~iwd~~~~~----------~~~~~~-~~~~i~~~~~~~~--~~~~~-  191 (403)
                      .|...|..+.+.|+. .++++....     +.|+|||..+-.          +-..+. |...-.+++|++.  +.++. 
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~-----~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSS-----GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCC-----CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            377888888887764 455555655     899999975431          111444 7777788999985  44554 


Q ss_pred             -ecCeEEEEEcCCce-------eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC---CceeEEeecCCc
Q 015650          192 -LEQKIFVYNFADLK-------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSR  260 (403)
Q Consensus       192 -~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~---~~~~~~~~~~~~  260 (403)
                       .|++|.+||+....       ....+.+|...+..++|++....++..+ | .|+.+.|||+|.   +......+|.+.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv-~-dd~~L~iwD~R~~~~~~~~~~~ah~~~  274 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV-G-DDGKLMIWDTRSNTSKPSHSVKAHSAE  274 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee-c-CCCeEEEEEcCCCCCCCcccccccCCc
Confidence             58999999997532       3456788999999999999888776554 4 899999999995   334567899999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCC
Q 015650          261 IACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       261 i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |.|++|+| ++.+||+|+.|++ |++||+++. +++.++..  |...|..+.|+|+.. .||+++.|+.+.|||+..-..
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            99999999 5667899999999 999999975 45667775  789999999999765 788899999999999987654


Q ss_pred             CCCCC-CCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC-CEEEEEccCC
Q 015650          338 SARSE-PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDG  402 (403)
Q Consensus       338 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~-~~l~~~~~dG  402 (403)
                      +...+ ...                -.|+.      +-...+|...|..+.|.|.. ..|+++++|+
T Consensus       352 eq~~eda~d----------------gppEl------lF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  352 EQSPEDAED----------------GPPEL------LFIHGGHTAKVSDFSWNPNEPWTIASVAEDN  396 (422)
T ss_pred             ccChhhhcc----------------CCcce------eEEecCcccccccccCCCCCCeEEEEecCCc
Confidence            33211 100                01111      11135677789999999976 5566777775

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=173.23  Aligned_cols=235  Identities=12%  Similarity=0.146  Sum_probs=192.7

Q ss_pred             CEEEEEc-CC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-c
Q 015650           98 GCFAAGT-DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F  174 (403)
Q Consensus        98 ~~l~~~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~  174 (403)
                      .+++++. .+ .+.+|.+....... ..+  --...+.++.-++.+.+++.+...     |.|++|.+.+|.++..+. |
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~-q~~--v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aH  122 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVV-QYI--VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAH  122 (476)
T ss_pred             hheeeecccCccccccccCchhhhh-hhc--ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhh
Confidence            5677776 33 39999987554443 222  245678999999999999999776     999999999999998888 9


Q ss_pred             CCceeEEEEecCceEEEe---cCeEEEEEcCC---------ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650          175 RSEVRSVKLRRDRIIVVL---EQKIFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (403)
Q Consensus       175 ~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (403)
                      -..|+++.|+.|+.++++   ||.|.+|++.+         -++++.+..|.-+|..+.+.+.+-.-.+.+++ .|.+++
T Consensus       123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k  201 (476)
T KOG0646|consen  123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIK  201 (476)
T ss_pred             ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEE
Confidence            999999999999999983   99999998753         35677888899999999888876555555544 999999


Q ss_pred             EEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC----------------CcEEEEEecCCCcccE
Q 015650          243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------------GTLLQEVRRGADRAEI  306 (403)
Q Consensus       243 v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~----------------~~~~~~~~~~~~~~~v  306 (403)
                      +||+..+.+.........+.+++.+|.++.++.|+.+|. |.+.++..                +..+..+.+|.....|
T Consensus       202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I  280 (476)
T KOG0646|consen  202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI  280 (476)
T ss_pred             EEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence            999999887776777888999999999999999999999 88887643                2344556664433599


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      +|++.+-||..|++|+.||.|+|||+.+.+.++++.
T Consensus       281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            999999999999999999999999999998877765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=4.1e-22  Score=177.62  Aligned_cols=234  Identities=17%  Similarity=0.261  Sum_probs=197.1

Q ss_pred             cccCCCCCCeEE-EEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLH-ISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~-i~~s~-d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ..+.+|.+-|.+ ++|-+ ++-.|++|+ |..|.+|........  ..+. +|...|.++....++. +++++-|     
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--~~Lk-gH~snVC~ls~~~~~~-~iSgSWD-----  121 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--YTLK-GHKSNVCSLSIGEDGT-LISGSWD-----  121 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch--hhhh-ccccceeeeecCCcCc-eEecccc-----
Confidence            557778888877 88864 444566666 666999998877766  6676 8999999999877777 8999999     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      .++++|.  .+++...++ |...|+++..-|++.++.  .|.+|++|.  .++.+++|.+|.+.++.+++-++..  ++.
T Consensus       122 ~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~--flS  195 (745)
T KOG0301|consen  122 STAKVWR--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH--FLS  195 (745)
T ss_pred             cceEEec--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC--eEe
Confidence            9999996  456666677 999999999999998777  699999998  4788999999999999999988865  444


Q ss_pred             eeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc-cEEEEEe
Q 015650          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA-EIYSLAF  311 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~-~v~~l~~  311 (403)
                      +  ++||.|++|++....+....+|..-++++....++..++++++|++ ++||+..  ++.+.+.   ++. .|+++.+
T Consensus       196 c--sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~---lPttsiWsa~~  267 (745)
T KOG0301|consen  196 C--SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVIT---LPTTSIWSAKV  267 (745)
T ss_pred             e--cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEe---cCccceEEEEE
Confidence            4  4899999999999999999999999999998888889999999999 9999864  8888887   444 8999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          312 SSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       312 s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      -++|. |++|+.||.|+||-.+...
T Consensus       268 L~NgD-Ivvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  268 LLNGD-IVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             eeCCC-EEEeccCceEEEEEecccc
Confidence            88877 5678889999999987554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.2e-22  Score=161.89  Aligned_cols=238  Identities=15%  Similarity=0.213  Sum_probs=188.0

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650           88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~  166 (403)
                      -.|+.|++.|.+||+|+.+| |.|||+.+....  +.+. +|..+|.+++|++++..|++++.|     ..|.+||+..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~ls-aH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLS-AHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhh-ccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCC
Confidence            68999999999999999666 999999887743  5565 899999999999999999999999     99999999999


Q ss_pred             ceeEEEecCCceeEEEEecCc-----------------------------------------------eEEE---ecCeE
Q 015650          167 RCIGELSFRSEVRSVKLRRDR-----------------------------------------------IIVV---LEQKI  196 (403)
Q Consensus       167 ~~~~~~~~~~~i~~~~~~~~~-----------------------------------------------~~~~---~d~~i  196 (403)
                      .+++.+.+..+|..+.|+|..                                               .++.   +.|.+
T Consensus        98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl  177 (405)
T KOG1273|consen   98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL  177 (405)
T ss_pred             CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence            999988888888877777632                                               2222   24567


Q ss_pred             EEEEcCCceeeeEeeccC-CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-------CceeEEe-----ecCCceEE
Q 015650          197 FVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------KRTKFIM-----AHDSRIAC  263 (403)
Q Consensus       197 ~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-------~~~~~~~-----~~~~~i~~  263 (403)
                      .+||..+.+++..++... ..+..+.++..++.+++-   +.|..|+.|+++.       +.+....     -.+..-.+
T Consensus       178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiN---tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIIN---TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             EEEecchheeeeeeeechheeeeEEEEeccCcEEEEe---cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            788888888887776555 667788898888866554   3899999999874       1111110     11233467


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       264 ~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      ++|+.+|.|++.++.....++||....|.+++.+.+. .......+.|+|-...+++- ..|.|+||.....++-
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enw  327 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENW  327 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCcceeeeecCC-chhheeecccccceeeeeec-cCCceEEEEeecccch
Confidence            8999999999988865545999999999999999864 33578899999988888877 7899999998877653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1e-21  Score=158.75  Aligned_cols=237  Identities=16%  Similarity=0.151  Sum_probs=179.4

Q ss_pred             CcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCC-CceeEEE--ecCCceeEEEEecCceEEE---ecCeEEEE
Q 015650          127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGEL--SFRSEVRSVKLRRDRIIVV---LEQKIFVY  199 (403)
Q Consensus       127 ~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~---~d~~i~i~  199 (403)
                      .....|.+++|+| ...+++.++-|     ++||+|++.. |..+-.-  .|.++|.+++|+.||..++   .|+.+++|
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD-----~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWD-----GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             CcccchheeEeccccCceEEecccC-----CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence            4667899999999 45566688888     9999999987 4444332  3899999999999998777   59999999


Q ss_pred             EcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC
Q 015650          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (403)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d  279 (403)
                      ||.++ .+..+..|..++..+.|-+......+++ |+-|.+|+.||.+.........-...++++..  -..+++.+..+
T Consensus       100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~T-GSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~  175 (347)
T KOG0647|consen  100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVT-GSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAE  175 (347)
T ss_pred             EccCC-CeeeeeecccceeEEEEecCCCcceeEe-cccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecC
Confidence            99998 4567778999999999988777556665 88999999999998665444445566776654  44577888888


Q ss_pred             CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccc
Q 015650          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI  359 (403)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (403)
                      .. |.+|+++++..........-.-.+++|+..+|.+..+.|+-+|.+.|..++.+.+...+.                 
T Consensus       176 r~-i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt-----------------  237 (347)
T KOG0647|consen  176 RH-IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT-----------------  237 (347)
T ss_pred             Cc-EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee-----------------
Confidence            88 999999876543322211133468899999999988999999999999999875311110                 


Q ss_pred             cccccceeeeeeeeEEEEE---eCC---CceEEEeccCCCEEEEEccCCC
Q 015650          360 KGVLPKYFSSEWSVAQFRL---VEG---SPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                   +...+-   -.+   .|+.++|+|.-..|+++|.||+
T Consensus       238 -------------FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt  274 (347)
T KOG0647|consen  238 -------------FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT  274 (347)
T ss_pred             -------------EEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence                         111110   011   4778999999999999999996

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.3e-21  Score=158.47  Aligned_cols=247  Identities=17%  Similarity=0.261  Sum_probs=177.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee--EEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY  153 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~  153 (403)
                      .+-.+|.+-|+++.|.+.|+.+|+++ |..|+|||.+....  .+....+ .|...|..+.|.+  =|..+++++.|   
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~D---   82 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYD---   82 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecC---
Confidence            45678999999999999999999998 55699999754333  3334444 6888899988854  47899999999   


Q ss_pred             CCceEEEEECCCC---------ceeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCc------eeeeEee-
Q 015650          154 PLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL------KLLHQIE-  211 (403)
Q Consensus       154 ~~~~i~iwd~~~~---------~~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~------~~~~~~~-  211 (403)
                        +++.||.-...         ....++. ....|+++.|.|.  |..++   .||.++||+..+.      .+..++. 
T Consensus        83 --rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   83 --RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             --CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence              99999974211         1223344 6789999999995  55555   5999999986542      2333333 


Q ss_pred             ------ccCCCceeEEEeeCCC-eEEEEeeCCcc-----CeEEEEEccCC-----ceeEEeecCCceEEEEEcCC----C
Q 015650          212 ------TIANPKGLCAVSQGVG-SLVLVCPGLQK-----GQVRVEHYASK-----RTKFIMAHDSRIACFALTQD----G  270 (403)
Q Consensus       212 ------~~~~~~~~~~~~~~~~-~~~~~~~g~~d-----~~i~v~d~~~~-----~~~~~~~~~~~i~~~~~sp~----g  270 (403)
                            .+..+..++.|++..- ..+++. |+.+     +.++||.....     ++..+..|..+|++|+|.|+    -
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence                  2233445566665321 123444 3222     47888887652     23456789999999999994    3


Q ss_pred             CEEEEEeCCCcEEEEEEcCCC--------------------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 015650          271 QLLATSSTKGTLVRIFNTLDG--------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (403)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~~~~--------------------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw  330 (403)
                      .+||+++.||  |+||.++..                    +.+..+.  .|.+.|+.+.|+-.|..|++.+.||.|++|
T Consensus       240 ~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  240 HLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             eeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeecc--CCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence            5789999999  999998631                    1222333  378899999999999999999999999999


Q ss_pred             EeecCC
Q 015650          331 NLKVNS  336 (403)
Q Consensus       331 d~~~~~  336 (403)
                      ...-..
T Consensus       316 kany~n  321 (361)
T KOG2445|consen  316 KANYNN  321 (361)
T ss_pred             hhhhhh
Confidence            876544

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=1.1e-21  Score=174.90  Aligned_cols=284  Identities=14%  Similarity=0.196  Sum_probs=211.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecc----cCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      ....+|++-|+++.|+|++..|.+++ |+++.+|.-+....+......    ++...+.....|++++..+++.+..   
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~---  337 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT---  337 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence            45679999999999999996666555 888999998776555544333    2345578899999999999999988   


Q ss_pred             CCceEEEEECCCCc-eeE--EEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc----eeeeEeeccCCCceeEEE
Q 015650          154 PLNKVMIWDDHQSR-CIG--ELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL----KLLHQIETIANPKGLCAV  222 (403)
Q Consensus       154 ~~~~i~iwd~~~~~-~~~--~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~  222 (403)
                        |..++|..+... ...  .+. |-..|.+++|.|.|.++.   .|.+-+++-.-..    -.+..-+.|.....++++
T Consensus       338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence              999999833322 222  223 889999999999999888   4888888864311    112222346666677777


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccC----------C-------------------------------------------
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYAS----------K-------------------------------------------  249 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~----------~-------------------------------------------  249 (403)
                      -+. +. .+++ |.+...+|+|+...          +                                           
T Consensus       416 vn~-~~-~FVS-gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~  492 (764)
T KOG1063|consen  416 VNE-DL-QFVS-GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP  492 (764)
T ss_pred             ccC-Cc-eeee-cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence            664 22 2333 44667777776531          0                                           


Q ss_pred             ------------------------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCc----EEEEEEcCCCcEEEEEecCC
Q 015650          250 ------------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGA  301 (403)
Q Consensus       250 ------------------------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~----~i~iwd~~~~~~~~~~~~~~  301 (403)
                                              ++..+.+|...|++++.+|+|+++|+++....    .|++|+..+...++.+..  
T Consensus       493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--  570 (764)
T KOG1063|consen  493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG--  570 (764)
T ss_pred             cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--
Confidence                                    00234678899999999999999999987442    399999998888887876  


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC
Q 015650          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (403)
                      |.-.|+.|+|||||++|++.+.|+++.+|.......                               ....+...+.|..
T Consensus       571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-------------------------------~e~~fa~~k~HtR  619 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-------------------------------DEFRFACLKAHTR  619 (764)
T ss_pred             cceEEEEEEECCCCcEEEEeecCceEEeeeeecccc-------------------------------hhhhhccccccce
Confidence            778999999999999999999999999999965542                               1111344677788


Q ss_pred             CceEEEeccCCCEEEEEccCCC
Q 015650          382 SPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       382 ~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      -|..+.|+||+.++++++.|.+
T Consensus       620 IIWdcsW~pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  620 IIWDCSWSPDEKYFATASRDKK  641 (764)
T ss_pred             EEEEcccCcccceeEEecCCce
Confidence            8999999999999999999863

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.5e-22  Score=168.92  Aligned_cols=240  Identities=16%  Similarity=0.217  Sum_probs=192.0

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           84 PPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~-~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      ...+|.+..|.|+|. .+++++.+. +..||+.+.+......+.+.....+..+..++++.+++..+..     |.|.+.
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lL  330 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLL  330 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEee
Confidence            345789999999998 777777555 9999998776654455542233456677788888899999988     999999


Q ss_pred             ECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCc--eeEEEeeCCCeEEEEeeCC
Q 015650          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       162 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~  236 (403)
                      ...+++.+..++-.+.|..++|+.|++.+.   .+|.|++||++...+++.+... +.+  ..+|.+.++.  ++|+ |+
T Consensus       331 hakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~--ylA~-GS  406 (514)
T KOG2055|consen  331 HAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGS--YLAT-GS  406 (514)
T ss_pred             hhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCc--eEEe-cc
Confidence            999999999999999999999999998776   4899999999999888888542 333  4566667766  6776 77


Q ss_pred             ccCeEEEEEccC-------CceeEEeecCCceEEEEEcCCCCEEEEEeC--CCcEEEEEEcCCCcEEEEEecCC-CcccE
Q 015650          237 QKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRGA-DRAEI  306 (403)
Q Consensus       237 ~d~~i~v~d~~~-------~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~--dg~~i~iwd~~~~~~~~~~~~~~-~~~~v  306 (403)
                      ..|.|.|||..+       +.+..+..-...|++|.|++|+.+||.+|.  +.. +++-.+.+......+.... .-+.|
T Consensus       407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccce
Confidence            999999999765       334455566778999999999999988775  556 8999888877766665421 22579


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          307 YSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      +||+|||.|.+||.|..+|.|.+|.+.
T Consensus       486 tc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  486 TCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEEEecCCCceEEeecCCCceeeEeec
Confidence            999999999999999999999999985

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=3.6e-20  Score=159.65  Aligned_cols=262  Identities=17%  Similarity=0.241  Sum_probs=197.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~  165 (403)
                      .-|.|++|.++|..+..-+++.|.||+..+.+..  +... .|...|.+++.-.++..+. ++.|     ..|..|| ..
T Consensus       247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~--k~~~-aH~ggv~~L~~lr~GtllS-GgKD-----Rki~~Wd-~~  316 (626)
T KOG2106|consen  247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRIS--KQVH-AHDGGVFSLCMLRDGTLLS-GGKD-----RKIILWD-DN  316 (626)
T ss_pred             eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEE--eEee-ecCCceEEEEEecCccEee-cCcc-----ceEEecc-cc
Confidence            5799999999998665444555999998655443  4444 6999999999999998777 8888     9999999 55


Q ss_pred             CceeEEEe---cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650          166 SRCIGELS---FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (403)
Q Consensus       166 ~~~~~~~~---~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (403)
                      -+.++..+   ..+.|+.++-...+.++. +.+.|..=.++++-.+ ...+|......++.+|+.+.+  +++| .|+.+
T Consensus       317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~--~T~g-qdk~v  392 (626)
T KOG2106|consen  317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQL--LTCG-QDKHV  392 (626)
T ss_pred             ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhhe--eecc-CcceE
Confidence            55555554   456788877665554444 5666766666665433 334677788889999987753  3334 89999


Q ss_pred             EEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650          242 RVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (403)
Q Consensus       242 ~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~  321 (403)
                      ++|+  ..++.-...-..++.|+.|+|.| .+|.|...|. ..+.|.++...+..-.   ...+++.++|+|+|.+||.|
T Consensus       393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~~~lv~~~~---d~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  393 RLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGR-WFVLDTETQDLVTIHT---DNEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             EEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccce-EEEEecccceeEEEEe---cCCceEEEEEcCCCCEEEEe
Confidence            9999  44444444567789999999999 8999999999 9999998855554333   46899999999999999999


Q ss_pred             eCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650          322 SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       322 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                      +.|+.|+||.++.....                        +    ..   +...++  ..++.+.||+|+++|.+-+.|
T Consensus       466 s~d~~iyiy~Vs~~g~~------------------------y----~r---~~k~~g--s~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  466 SHDNHIYIYRVSANGRK------------------------Y----SR---VGKCSG--SPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             cCCCeEEEEEECCCCcE------------------------E----EE---eeeecC--ceeEEeeecCCCceEEeccCc
Confidence            99999999999987730                        0    00   111223  689999999999999987765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=3.8e-21  Score=155.99  Aligned_cols=236  Identities=17%  Similarity=0.168  Sum_probs=182.2

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCc
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADL  204 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~  204 (403)
                      .....|.++.|++....|+.++-|     |.+++|++....+...++|..++.+++|.++...+.  .||.|+.+|+.++
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWD-----gslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWD-----GSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEecc-----CcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC
Confidence            356789999999876666666677     999999999998888999999999999999887777  6999999999887


Q ss_pred             eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 015650          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (403)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~  284 (403)
                      ... .+..|..++.++...+..+.  ++ +|+.|+.|++||.+.............|.++..  .|+.|+.|+.+.. |.
T Consensus        86 ~~~-~igth~~~i~ci~~~~~~~~--vI-sgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~-v~  158 (323)
T KOG1036|consen   86 NED-QIGTHDEGIRCIEYSYEVGC--VI-SGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRK-VL  158 (323)
T ss_pred             cce-eeccCCCceEEEEeeccCCe--EE-EcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCce-EE
Confidence            644 45578899999999976553  33 367999999999997544433334457888876  6778999999999 99


Q ss_pred             EEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccc
Q 015650          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (403)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (403)
                      +||+++.......+.....-.+.++++-|++.-.++++-||.|.+=.++..+....                        
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s------------------------  214 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS------------------------  214 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh------------------------
Confidence            99999877655444333446799999999988899999999998877776632110                        


Q ss_pred             ceeeeeeeeEEEEEeC------CCceEEEeccCCCEEEEEccCC
Q 015650          365 KYFSSEWSVAQFRLVE------GSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       365 ~~~~~~~~~~~~~~~~------~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                          ....+...+..+      -+|+.++|||-.++|++|+.||
T Consensus       215 ----kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG  254 (323)
T KOG1036|consen  215 ----KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG  254 (323)
T ss_pred             ----hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence                111222222111      1789999999999999999998

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=3.1e-20  Score=169.03  Aligned_cols=317  Identities=16%  Similarity=0.177  Sum_probs=220.7

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEE-EeeCCCCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPL  155 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~d~~~~~  155 (403)
                      ..++.++...|+++.=+|-=..+|.|..+| |.|+++...+.+  .+++ ..-..|++++|..||.. ++++...     
T Consensus       195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil--~sFk-~d~g~VtslSFrtDG~p~las~~~~-----  266 (910)
T KOG1539|consen  195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL--MSFK-QDWGRVTSLSFRTDGNPLLASGRSN-----  266 (910)
T ss_pred             EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE--EEEE-ccccceeEEEeccCCCeeEEeccCC-----
Confidence            366888999999999999889999999665 999999988776  6676 23589999999988765 5566655     


Q ss_pred             ceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCC--c--eeeeEeeccCCCceeEEEeeCC
Q 015650          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD--L--KLLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~  226 (403)
                      |.+.+||++..+.+..+.  |.+.|....|-+...+++   .|+.+++|=..+  |  +.++.-.+|..+-.++.+.-..
T Consensus       267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~  346 (910)
T KOG1539|consen  267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ  346 (910)
T ss_pred             ceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence            899999999998888777  889999999999888877   377766664443  3  3344434555554444443221


Q ss_pred             CeEEEE---------------------------------------------------------------eeCCccCeEEE
Q 015650          227 GSLVLV---------------------------------------------------------------CPGLQKGQVRV  243 (403)
Q Consensus       227 ~~~~~~---------------------------------------------------------------~~g~~d~~i~v  243 (403)
                      ...++.                                                               +..-.+..++.
T Consensus       347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence            111111                                                               11122345555


Q ss_pred             EEccCCce-eEE------eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe-cCCCcccEEEEEeCCCC
Q 015650          244 EHYASKRT-KFI------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNA  315 (403)
Q Consensus       244 ~d~~~~~~-~~~------~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~s~d~  315 (403)
                      |+++.+.. ...      +.....+++++.++.|++.+.|...|. |-+|++++|-....+- ...|..+|++++...-+
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~-Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n  505 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT-IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN  505 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe-EEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence            66555433 111      112367899999999999999999999 9999999999888883 23488999999999999


Q ss_pred             CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCC-C-Ccccccccccc-ccccee-e--eeeeeEEEEEeCCCceEEEec
Q 015650          316 QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP-T-LPTSSLSFIKG-VLPKYF-S--SEWSVAQFRLVEGSPYIVAFG  389 (403)
Q Consensus       316 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~~fs  389 (403)
                      +.+++++.+|.+++||+.+............... + ...+.+-.+.. .....+ .  ...-+.++.+|.+.++.++||
T Consensus       506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS  585 (910)
T KOG1539|consen  506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS  585 (910)
T ss_pred             ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence            9999999999999999999885444432211111 1 11111111110 000000 0  111234578899999999999


Q ss_pred             cCCCEEEEEccCCC
Q 015650          390 HQKNTVVILGMDGR  403 (403)
Q Consensus       390 ~d~~~l~~~~~dG~  403 (403)
                      |||++|++++.|++
T Consensus       586 ~DgrWlisasmD~t  599 (910)
T KOG1539|consen  586 PDGRWLISASMDST  599 (910)
T ss_pred             CCCcEEEEeecCCc
Confidence            99999999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-21  Score=166.81  Aligned_cols=257  Identities=16%  Similarity=0.163  Sum_probs=195.8

Q ss_pred             CeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCe--eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           87 TLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~---~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      .+.++.|+.... |++++   |..+++|.-+...  ......+. +.  .-.++.......++++++..     +.|+||
T Consensus        36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~-gd--~~~Cv~~~s~S~y~~sgG~~-----~~Vkiw  106 (673)
T KOG4378|consen   36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLT-GD--NAFCVACASQSLYEISGGQS-----GCVKIW  106 (673)
T ss_pred             cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccc-cc--hHHHHhhhhcceeeeccCcC-----ceeeeh
Confidence            488999987665 44443   4448999764331  11222232 22  22333333445899999988     999999


Q ss_pred             ECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc-CCCceeEEEeeCCCeEEEEeeCC
Q 015650          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      |++...+.+.++ |...|+++.++....+++   ..|.|.|..+.++.....|... ...+..+.+++..+.++..+  +
T Consensus       107 dl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~a--s  184 (673)
T KOG4378|consen  107 DLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIA--S  184 (673)
T ss_pred             hhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEee--c
Confidence            999766677777 999999999999888888   3678999999998877777654 33456889999877654433  4


Q ss_pred             ccCeEEEEEccCCce--eEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          237 QKGQVRVEHYASKRT--KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       237 ~d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      .+|.|.+||+.....  .....|..+...|+|+|. ..+|++.+.|.. |.+||....+....+.   ...+...++|++
T Consensus       185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf~~  260 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAFSE  260 (673)
T ss_pred             cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeeecC
Confidence            899999999988543  345789999999999994 567789999999 9999999877777776   456899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~  392 (403)
                      +|.+|+.|...|.|..||++..+.                                  .+..+..|+..|++++|-+..
T Consensus       261 ~G~~L~aG~s~G~~i~YD~R~~k~----------------------------------Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  261 CGTYLCAGNSKGELIAYDMRSTKA----------------------------------PVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CceEEEeecCCceEEEEecccCCC----------------------------------CceEeeecccceeEEEeeecc
Confidence            999999999999999999998763                                  144567777788888886653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.8e-23  Score=185.77  Aligned_cols=232  Identities=12%  Similarity=0.213  Sum_probs=202.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      .+..|...|.|+..-..++.+++|++.. +.+|.+......  ..+. +|...|-++.|+.....++.+..+     |+|
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i--~S~~-~hespIeSl~f~~~E~Llaagsas-----gti   94 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI--TSLT-GHESPIESLTFDTSERLLAAGSAS-----GTI   94 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh--heee-ccCCcceeeecCcchhhhcccccC-----Cce
Confidence            4566889999999978889999998665 889998655444  3455 799999999999999999999998     999


Q ss_pred             EEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      ++||++.++.++++. |...+..+.|+|-+.+.+   .|..+++||++...+.+.+.+|...+.++.|+|+|.  +++. 
T Consensus        95 K~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr--~v~~-  171 (825)
T KOG0267|consen   95 KVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR--WVAS-  171 (825)
T ss_pred             eeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc--eeec-
Confidence            999999999999988 999999999999999997   599999999998889999999999999999999987  5555 


Q ss_pred             CCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          235 GLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      |.+|..++|||+..+++ ..+..|.+.+.++.|+|..-++++|+.|++ |++||+++.+.+.....  ....|.+++|+|
T Consensus       172 g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~  248 (825)
T KOG0267|consen  172 GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNP  248 (825)
T ss_pred             cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecC
Confidence            55799999999988665 567889999999999999999999999999 99999999888877765  457899999999


Q ss_pred             CCCEEEEEeCCC
Q 015650          314 NAQWLAVSSDKG  325 (403)
Q Consensus       314 d~~~l~s~~~dg  325 (403)
                      ++..+++|....
T Consensus       249 ~~~~~~~G~q~s  260 (825)
T KOG0267|consen  249 DGKIVLSGEQIS  260 (825)
T ss_pred             CceeeecCchhh
Confidence            999999886543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.1e-21  Score=175.66  Aligned_cols=238  Identities=16%  Similarity=0.204  Sum_probs=185.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCC---eEEEeeCCCCCCCCCceE
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~i  158 (403)
                      .....|.+++.+|+|++||+|...| ++||++...+..  ..++ .|...|.++.|+..   ...|+++++|     .-|
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~--~~~e-AHesEilcLeyS~p~~~~kLLASasrd-----RlI  528 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT--CFME-AHESEILCLEYSFPVLTNKLLASASRD-----RLI  528 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhh--hhee-cccceeEEEeecCchhhhHhhhhccCC-----ceE
Confidence            4456799999999999999998666 999999766654  3344 79999999999753   5679999999     999


Q ss_pred             EEEECCCC-ceeEEEe-cCCceeEEEEecCc--eEEE---ecCeEEEEEcCCceeeeEeec-----cCCCceeEEEeeCC
Q 015650          159 MIWDDHQS-RCIGELS-FRSEVRSVKLRRDR--IIVV---LEQKIFVYNFADLKLLHQIET-----IANPKGLCAVSQGV  226 (403)
Q Consensus       159 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~--~~~~---~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~  226 (403)
                      .|+|+... .+++++. |...|+++.|.-.|  ..++   .|..|++--.+.......+..     ....++.+++.|..
T Consensus       529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~  608 (1080)
T KOG1408|consen  529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS  608 (1080)
T ss_pred             EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence            99998765 5677777 99999999998876  3333   466655433221111112211     12345567777766


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCce-eEEe---ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~---~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (403)
                      +.  +++ ++.|..|+||++..++. +.++   .|++..-.+...|.|.||++.+.|.+ +.++|..+|+++..+.+  |
T Consensus       609 k~--v~t-~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G--H  682 (1080)
T KOG1408|consen  609 KL--VVT-VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG--H  682 (1080)
T ss_pred             ce--EEE-EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--c
Confidence            64  443 34999999999998554 4454   46778889999999999999999999 99999999999999987  7


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      ...|+.+.|.+|-++|++.+.||.|.||.+..
T Consensus       683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chheeeeeecccchhheeecCCceEEEEECch
Confidence            78999999999999999999999999999843

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=5.8e-21  Score=158.83  Aligned_cols=188  Identities=15%  Similarity=0.222  Sum_probs=152.1

Q ss_pred             CeEEEeeCCCCCCCCCceEEEEECCC----------------CceeEEEe-cCCceeEEEEec--CceEEEe--cCeEEE
Q 015650          140 NILALVGGGPDPQYPLNKVMIWDDHQ----------------SRCIGELS-FRSEVRSVKLRR--DRIIVVL--EQKIFV  198 (403)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~iwd~~~----------------~~~~~~~~-~~~~i~~~~~~~--~~~~~~~--d~~i~i  198 (403)
                      +..+.++-+..     |.|+||++..                .+++.++. |...=.+++|+|  .|.++..  -+.|++
T Consensus       164 ~~~~~aswse~-----G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~l  238 (440)
T KOG0302|consen  164 NEVLCASWSEN-----GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHL  238 (440)
T ss_pred             Ccceeeeeccc-----CcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEe
Confidence            55677777777     9999999742                24556666 778888999999  4555553  467999


Q ss_pred             EEcCCcee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC---ceeEEeecCCceEEEEEcCCCCE
Q 015650          199 YNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQL  272 (403)
Q Consensus       199 ~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~---~~~~~~~~~~~i~~~~~sp~g~~  272 (403)
                      |...++.-   ...+.+|...|..++|+|..++++..|  +-||.|+|||+|.+   .....++|.+.|+.|.|+.+-.+
T Consensus       239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc--S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~l  316 (440)
T KOG0302|consen  239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC--SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPL  316 (440)
T ss_pred             eeeccCceeecCccccccccchhhhccCCccCceEEee--ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcce
Confidence            99887643   233557888999999999988866554  57999999999986   45566899999999999998889


Q ss_pred             EEEEeCCCcEEEEEEcCC---CcEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCC
Q 015650          273 LATSSTKGTLVRIFNTLD---GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       273 l~s~~~dg~~i~iwd~~~---~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ||+|+.||+ ++|||++.   ++++..|+.  |..+|++|.|+|.. ..|++++.|..|.|||+.....
T Consensus       317 LasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  317 LASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             eeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            999999999 99999975   567888886  78999999999854 5788888999999999987653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=5.7e-21  Score=155.57  Aligned_cols=245  Identities=15%  Similarity=0.180  Sum_probs=194.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcC------C--------Ce------------------------eE
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCD------P--------FR------------------------EI  119 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~------~--------~~------------------------~~  119 (403)
                      ..+.+|.+.|++|+|++.+.++++++ |.+-.||...      .        .+                        ..
T Consensus       184 ~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv  263 (481)
T KOG0300|consen  184 ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV  263 (481)
T ss_pred             eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence            66899999999999999999999998 5558888731      0        00                        01


Q ss_pred             EEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCe
Q 015650          120 FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQK  195 (403)
Q Consensus       120 ~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~  195 (403)
                      ....+. +|...|.+..|-..+..+++++-|     .+-.+||+++|+.+..+. |....+.++-+|..++++   -|.+
T Consensus       264 Pl~~lt-gH~~vV~a~dWL~gg~Q~vTaSWD-----RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT  337 (481)
T KOG0300|consen  264 PLMRLT-GHRAVVSACDWLAGGQQMVTASWD-----RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT  337 (481)
T ss_pred             eeeeee-ccccceEehhhhcCcceeeeeecc-----ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce
Confidence            112333 677777788888888889999998     999999999999999999 999999999999999888   3889


Q ss_pred             EEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc--eeEEeecCCceEEEEEcCCCCE
Q 015650          196 IFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQL  272 (403)
Q Consensus       196 i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp~g~~  272 (403)
                      .++||++.. ..+..|++|...+....|..+.+   ++ +|+.|.+|++||+++.+  +.++ ....+++.++.+..+.+
T Consensus       338 FRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~---vV-SgSDDrTvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~i  412 (481)
T KOG0300|consen  338 FRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR---VV-SGSDDRTVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHPI  412 (481)
T ss_pred             eEeccchhhcceeeeecccccceeEEEEecCCc---ee-ecCCCceEEEeeeccccCcceee-ecCCccceeEeecCCce
Confidence            999999853 45677899999999999998865   33 47899999999999843  3333 34677899999988888


Q ss_pred             EEEEeCCCcEEEEEEcCCCcEEEEEe---cCCCcccEEEEEeCCCCC--EEEEEeCCCcEEEEEeecCC
Q 015650          273 LATSSTKGTLVRIFNTLDGTLLQEVR---RGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       273 l~s~~~dg~~i~iwd~~~~~~~~~~~---~~~~~~~v~~l~~s~d~~--~l~s~~~dg~v~iwd~~~~~  336 (403)
                      |+.--.+.. |++||+...++ ..+.   ...|...|+|++|..+..  -|++++.|..+.-|+++.++
T Consensus       413 IAiPhDNRq-vRlfDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  413 IAIPHDNRQ-VRLFDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             EEeccCCce-EEEEecCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            888877777 99999864433 3332   223778899999986543  58899999999999998875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.8e-20  Score=165.72  Aligned_cols=231  Identities=16%  Similarity=0.249  Sum_probs=188.0

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEE-Ee--cCCceeEEEEecCceEEE--ecCeEEEEEcC
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFA  202 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~-~~--~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~  202 (403)
                      .+..|++++|+.+...++.+-.+     |.|.||++..+-.... +.  ....|.+++|.+.++++.  .+|.|.-||+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~-----g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTD-----GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eccceEEEEEeccCCceeeeccC-----CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc
Confidence            56789999999988888888888     9999999988744333 33  467899999998888777  69999999999


Q ss_pred             CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE---EeecCCceEEEEEcCCCCEEEEEeCC
Q 015650          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTK  279 (403)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~---~~~~~~~i~~~~~sp~g~~l~s~~~d  279 (403)
                      +++.+..+....+.+..++.+|.++.+.+   |++||.+..++...+.+..   +...++.|.+++|+|++..|++|+.|
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~I---gcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAI---GCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEe---ecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence            99999999999999999999999886554   4589977777777666533   34456889999999999999999999


Q ss_pred             CcEEEEEEcCCCcEEEEEec-----CC-CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcc
Q 015650          280 GTLVRIFNTLDGTLLQEVRR-----GA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (403)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (403)
                      |. |++||+.++..+.....     .. ...-|+++.|-.+ ..|++|..-|+|++||...+...               
T Consensus       176 g~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLi---------------  238 (691)
T KOG2048|consen  176 GV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLI---------------  238 (691)
T ss_pred             ce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchh---------------
Confidence            99 99999999887763221     11 2245888888755 46889999999999999998842               


Q ss_pred             cccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                          ..++.|.+.|.+++..+++++++++|.||.
T Consensus       239 --------------------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~  268 (691)
T KOG2048|consen  239 --------------------QSHSCHDADVLALAVADNEDRVFSAGVDPK  268 (691)
T ss_pred             --------------------hhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence                                224566788999999999999999999974

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.5e-21  Score=161.69  Aligned_cols=241  Identities=17%  Similarity=0.230  Sum_probs=178.1

Q ss_pred             EEEEEcCC-------CCEEEEEc-CCcEEEEEcCCCeeEEE-----------------Eec-ccCcceeEEEEeeeCC-e
Q 015650           89 LHISFNQD-------HGCFAAGT-DHGFRIYNCDPFREIFR-----------------RDF-ERGGGIGVVEMLFRCN-I  141 (403)
Q Consensus        89 ~~i~~s~d-------~~~l~~~~-~~~i~iw~~~~~~~~~~-----------------~~~-~~~~~~~v~~~~~~~~-~  141 (403)
                      .|++|...       |.++|.|+ +..|.|||++-....+.                 +.. ..+|...+.+++|+.. .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            56666432       57999999 55699999853221110                 000 0257777788888765 5


Q ss_pred             EEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCc-eEEE---ecCeEEEEEcCCceee-eEeeccCC
Q 015650          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLL-HQIETIAN  215 (403)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~-~~~~~~~~  215 (403)
                      ..|++++.|     .+|++||+.++++...+. |...|.++.|+|.. .+++   .|++|.+.|++..... ..+ ...+
T Consensus       257 nVLaSgsaD-----~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g  330 (463)
T KOG0270|consen  257 NVLASGSAD-----KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDG  330 (463)
T ss_pred             eeEEecCCC-----ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-Eecc
Confidence            578999999     999999999999999999 89999999999964 4444   5999999999853222 222 2346


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCc
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT  292 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~  292 (403)
                      .+..++|.+.....+++  +..||.++-+|+|.  +.+..+++|.+.|.++++++. ..+|++++.|+. |++|++....
T Consensus       331 ~VEkv~w~~~se~~f~~--~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~  407 (463)
T KOG0270|consen  331 EVEKVAWDPHSENSFFV--STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDS  407 (463)
T ss_pred             ceEEEEecCCCceeEEE--ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCC
Confidence            67889999988776665  46899999999998  567889999999999999884 456889999999 9999986543


Q ss_pred             EEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCCC
Q 015650          293 LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       293 ~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      ..........-+...|.++.|+-. +|+.|+..+.++|||+.+...+
T Consensus       408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            321111101123467778888665 5778888889999999988753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=1.7e-20  Score=153.41  Aligned_cols=281  Identities=15%  Similarity=0.204  Sum_probs=203.8

Q ss_pred             cccCCCCCCeEEEEEcC-----CCCEEEEEcCCcEEEEEcCCCe--eEEEEecccCcceeEEEEeeeCC----eEEEeeC
Q 015650           79 STSSSPPPTLLHISFNQ-----DHGCFAAGTDHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCN----ILALVGG  147 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~-----d~~~l~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s~  147 (403)
                      +....|..+|..++|++     +-+.+|+.+.+.+.||......  ..+.......+......++|.-+    ..+++.+
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            45677889999999985     2367788878889999986544  33333333346666666666432    4566777


Q ss_pred             CCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEe---eccCCCcee
Q 015650          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI---ETIANPKGL  219 (403)
Q Consensus       148 ~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~---~~~~~~~~~  219 (403)
                      +.-     |.|+|.|+.++++...+. |...|+.+.+.|+...++    .|..|++|++++..++..|   .+|.+.+-.
T Consensus       112 G~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS  186 (385)
T KOG1034|consen  112 GYL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS  186 (385)
T ss_pred             cce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence            776     999999999999999998 999999999999874333    4899999999999998887   567888888


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----------------------------eEEeecCCceEEEEEcCCC
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------------------------KFIMAHDSRIACFALTQDG  270 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----------------------------~~~~~~~~~i~~~~~sp~g  270 (403)
                      +.|+.+++  .+++.| .|..|++|++..++.                             .....|...|.|+.|  =|
T Consensus       187 vD~~~~gd--~i~ScG-mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~g  261 (385)
T KOG1034|consen  187 VDFSLDGD--RIASCG-MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FG  261 (385)
T ss_pred             EEEcCCCC--eeeccC-CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hh
Confidence            88888888  566655 899999999984221                             012346677777777  46


Q ss_pred             CEEEEEeCCCcEEEEEEc-CCCc-------------EEEEEecCCCcccEEEE--EeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          271 QLLATSSTKGTLVRIFNT-LDGT-------------LLQEVRRGADRAEIYSL--AFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~-~~~~-------------~~~~~~~~~~~~~v~~l--~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      .++++-+-++. |..|.. +-.+             .+.++.-  ....|+-|  +|.|-+++||.|...|.|++||++.
T Consensus       262 d~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~  338 (385)
T KOG1034|consen  262 DFILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN  338 (385)
T ss_pred             hheeecccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence            78888888888 999976 1111             2223332  12344544  5567788999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .++..-..                               .........|...+||-||..|+..+.||+
T Consensus       339 ~ep~~~tt-------------------------------l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  339 NEPPKCTT-------------------------------LTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             CCCccCce-------------------------------EEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            87521100                               001122357888999999999999999985

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2e-20  Score=152.41  Aligned_cols=204  Identities=16%  Similarity=0.204  Sum_probs=151.2

Q ss_pred             ecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce-----eEEEecCCceeEEEEecCceEEE----ec
Q 015650          123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC-----IGELSFRSEVRSVKLRRDRIIVV----LE  193 (403)
Q Consensus       123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~----~d  193 (403)
                      .+. +|...|++++|+.|+..|++.+.|     +.|++|+++....     ++.--.-+..+.+.|.||.+-++    ..
T Consensus        81 ~LK-gH~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   81 VLK-GHKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             hhh-ccCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence            344 899999999999999999999999     9999999876432     21111234678899999977655    36


Q ss_pred             CeEEEEEcCC---ceeeeEe---e----ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEE
Q 015650          194 QKIFVYNFAD---LKLLHQI---E----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIAC  263 (403)
Q Consensus       194 ~~i~i~d~~~---~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~  263 (403)
                      +++++|.+..   |.....+   .    .....+..+.+--.+...++.++ +.|..|.+|+++.+.+..+......-+.
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa-s~dt~i~lw~lkGq~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA-SLDTKICLWDLKGQLLQSIDTNQSSNYD  233 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe-cCCCcEEEEecCCceeeeeccccccccc
Confidence            7899998753   2211111   0    01223344445444555566653 4899999999998888888877777888


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEEcC---CCc---EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          264 FALTQDGQLLATSSTKGTLVRIFNTL---DGT---LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       264 ~~~sp~g~~l~s~~~dg~~i~iwd~~---~~~---~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      .+.||+|++|++++..-. |+||..-   .|+   ..+.+....|...|..++|+++...+++.+.||+++|||++-
T Consensus       234 aavSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             eeeCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            999999999999998888 9999862   232   222333334889999999999999999999999999999864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.7e-20  Score=171.20  Aligned_cols=234  Identities=17%  Similarity=0.195  Sum_probs=182.8

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC-ceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCC
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD  203 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~  203 (403)
                      .|..+.+.++|.+++.++++++.|     |.|++|+.... +.-..+. +...|.+++......+.. .+++|.+|.+..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsd-----g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSD-----GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCC-----CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence            488889999999999999999999     99999987665 4444455 777788887766633333 589999999988


Q ss_pred             ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcE
Q 015650          204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTL  282 (403)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~  282 (403)
                      ++.-..+....-++..++++-+++  +++. |+.|-.|++.++.. .....+.+|..+|.++.|+|.+.+||+.+.||. 
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~--~iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-  161 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGK--MIAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-  161 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCc--EEEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-
Confidence            766555555567889999998887  3443 56899999999877 566788999999999999999999999999999 


Q ss_pred             EEEEEcCCCcEEEEEecCC------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccc
Q 015650          283 VRIFNTLDGTLLQEVRRGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (403)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (403)
                      |+|||+.++.+..++.+-.      ....+..++|+|+|..|+..+.|+.|++|+....+....+.              
T Consensus       162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--------------  227 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--------------  227 (933)
T ss_pred             EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec--------------
Confidence            9999999988777665311      13457789999999999999999999999999887532221              


Q ss_pred             ccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                                         ...+...+.+++|+|.|+|||+++-||
T Consensus       228 -------------------~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  228 -------------------DKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             -------------------ccccccceEEEEEcCCCcEEeeeccCC
Confidence                               112223366677777777777777766

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=3.6e-20  Score=157.81  Aligned_cols=248  Identities=12%  Similarity=0.106  Sum_probs=183.4

Q ss_pred             cccCCCCCCeEEEEEcCCC--CEEEEEcCCc-EEEEEcCCCeeE--EEEecccCcceeEEEEeeeCC-eEEEeeCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDH--GCFAAGTDHG-FRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQ  152 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~--~~l~~~~~~~-i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~  152 (403)
                      ....-+..+|++++|+|..  +++|+|+..| |-+||+.+.++.  -...+. .|...|.++.|+|. ...+++.+.|  
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyD--  256 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYD--  256 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccC--
Confidence            4456688999999999965  5677777655 999999533221  112333 68899999999985 4457777888  


Q ss_pred             CCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE-e--cCeEEEEEcCCcee-eeEeeccCCCceeEEEeeC
Q 015650          153 YPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKL-LHQIETIANPKGLCAVSQG  225 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~-~--d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~  225 (403)
                         |+|++-|++.+..-..+.   ....+..+.|+.+...++ .  =|...+||++++.. ...+..|...|..++++|-
T Consensus       257 ---GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  257 ---GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             ---ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence               999999998874333332   344566777877654444 3  24789999998544 6667778889999999998


Q ss_pred             CCeEEEEeeCCccCeEEEEEccC---Cc--eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc----CCCcEEEE
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYAS---KR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT----LDGTLLQE  296 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~---~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~----~~~~~~~~  296 (403)
                      ...+ +++ ++.|++.+|||++.   +.  ......|...|.+..|||.+-.|++.+.|.. |+|||.    ....+..+
T Consensus       334 ~p~~-laT-~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  334 CPWF-LAT-ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             Cchh-eee-cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccce
Confidence            8764 444 35899999999987   22  2445679999999999998888999999999 999998    33445555


Q ss_pred             EecCCCcc----cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          297 VRRGADRA----EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       297 ~~~~~~~~----~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +.- .+..    ......|.|+..+|++|-.-..|-|+|-+.++
T Consensus       411 I~H-n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  411 IPH-NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             eec-cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            541 1111    24457899999999999988889999888776

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=2.3e-19  Score=160.21  Aligned_cols=290  Identities=14%  Similarity=0.173  Sum_probs=204.0

Q ss_pred             CCCCCCCccccCCCCCCeEEEEEcCCCC---EEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEee
Q 015650           71 MPLPSPAESTSSSPPPTLLHISFNQDHG---CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG  146 (403)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~---~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s  146 (403)
                      .+.+........+|..+|+|+.|-|+.+   ++++|+ |+.|.+|.++.........+. +|...+.++.-...  ....
T Consensus        40 dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~-g~~~~~~cv~a~~~--~~~~  116 (764)
T KOG1063|consen   40 DPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ-GHCKECVCVVARSS--VMTC  116 (764)
T ss_pred             CcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec-CcceeEEEEEeeee--EEEe
Confidence            3444455678899999999999999887   788887 556999999866666667776 46666666543332  2222


Q ss_pred             CCCCCCCCCceEEEEECCCCc--eeEEEec-CC--ceeEEEEec-CceEEE-e---cCeEEEEEcCC--ceeeeEeeccC
Q 015650          147 GGPDPQYPLNKVMIWDDHQSR--CIGELSF-RS--EVRSVKLRR-DRIIVV-L---EQKIFVYNFAD--LKLLHQIETIA  214 (403)
Q Consensus       147 ~~~d~~~~~~~i~iwd~~~~~--~~~~~~~-~~--~i~~~~~~~-~~~~~~-~---d~~i~i~d~~~--~~~~~~~~~~~  214 (403)
                      ...+     +.+.+||.+..+  +...+.. ..  -..++++.+ .+.++. .   +..|.+|.-..  .+.+..+.+|.
T Consensus       117 ~~ad-----~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~  191 (764)
T KOG1063|consen  117 KAAD-----GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHT  191 (764)
T ss_pred             eccC-----ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccc
Confidence            2445     899999986555  3333331 11  223555555 344444 3   44566665443  25677889999


Q ss_pred             CCceeEEEeeCCC-eEEEEeeCCccCeEEEEEccCCc-------------------------e-------eEEeecCCce
Q 015650          215 NPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR-------------------------T-------KFIMAHDSRI  261 (403)
Q Consensus       215 ~~~~~~~~~~~~~-~~~~~~~g~~d~~i~v~d~~~~~-------------------------~-------~~~~~~~~~i  261 (403)
                      +.|..++|..-+. .++++ +++.|..|+||.+.-..                         +       ..+.+|.++|
T Consensus       192 DWIrsl~f~~~~~~~~~la-S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV  270 (764)
T KOG1063|consen  192 DWIRSLAFARLGGDDLLLA-SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV  270 (764)
T ss_pred             hhhhhhhhhccCCCcEEEE-ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce
Confidence            9999999987766 55555 47799999999864311                         0       1134899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEEcCCC--cEEEEEecC---CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          262 ACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRG---ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~---~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +++.|+|.+..|++++.|.+ +.+|.-.+.  --+..++.+   .......+..|+|++..+++-+..|..++|......
T Consensus       271 ~sv~W~p~~~~LLSASaDks-miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~  349 (764)
T KOG1063|consen  271 YSVWWHPEGLDLLSASADKS-MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT  349 (764)
T ss_pred             EEEEEccchhhheecccCcc-eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence            99999999999999999999 999975433  333333321   123468899999999999999999999999922221


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE-EEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA-QFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                                       .|... -+.+|-+.|..++|+|.|.+|++++.|-|
T Consensus       350 ---------------------------------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  350 ---------------------------------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             ---------------------------------ceeeccccccccccceeeeecCCCCEEEEeccccc
Confidence                                             23222 25677889999999999999999999854

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=8.1e-20  Score=152.05  Aligned_cols=242  Identities=10%  Similarity=0.116  Sum_probs=171.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEE--cCCc-EEEEEcCCC--------------eeEEEEecccCcceeEEEEeeeCCe
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAG--TDHG-FRIYNCDPF--------------REIFRRDFERGGGIGVVEMLFRCNI  141 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~--~~~~-i~iw~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~  141 (403)
                      .....|.+.|+.+.-++-++-.+++  ++.| |.||++...              +.....++. +|...-+.+.|+|-.
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIK  223 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeeccccc
Confidence            4466788888888888776443333  4766 999998421              111123444 677778899999832


Q ss_pred             -EEEeeCCCCCCCCCceEEEEECCCCceeEE---Ee-cCCceeEEEEecCceEEE----ecCeEEEEEcCCcee--eeEe
Q 015650          142 -LALVGGGPDPQYPLNKVMIWDDHQSRCIGE---LS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL--LHQI  210 (403)
Q Consensus       142 -~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~--~~~~  210 (403)
                       -.+++|+..     +.|++|...+|.-...   +. |...|..++|+|...-++    .|++|+|||++.+..  ....
T Consensus       224 ~g~LlsGDc~-----~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~  298 (440)
T KOG0302|consen  224 TGRLLSGDCV-----KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST  298 (440)
T ss_pred             ccccccCccc-----cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence             236666665     8899999888754322   22 899999999999654333    599999999998722  2223


Q ss_pred             eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC----CceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 015650          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRI  285 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~----~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~i  285 (403)
                      +.|...|..+.|+..-.  ++++ |..||+++|||++.    ..+..++-|..+|++|.|+| +...|++++.|.. |.|
T Consensus       299 kAh~sDVNVISWnr~~~--lLas-G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-iti  374 (440)
T KOG0302|consen  299 KAHNSDVNVISWNRREP--LLAS-GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITI  374 (440)
T ss_pred             eccCCceeeEEccCCcc--eeee-cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEE
Confidence            77888888888877655  5665 66999999999998    44568899999999999999 4567888888999 999


Q ss_pred             EEcCCCc----------------EEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015650          286 FNTLDGT----------------LLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN  331 (403)
Q Consensus       286 wd~~~~~----------------~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd  331 (403)
                      ||+.-..                +.+.+-.|.....|..+.|++.- .+|++.+.|| +.||.
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            9985311                01112222234568889999854 3777888888 55554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=1.6e-19  Score=160.73  Aligned_cols=263  Identities=12%  Similarity=0.172  Sum_probs=195.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~  166 (403)
                      .|+.++|-|||..|+.+.++.+.|||...+...  .+++ +|...|.+++|+.+|..+++|+.|     ..|.+|+- .-
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLK-gHKDtVycVAys~dGkrFASG~aD-----K~VI~W~~-kl   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLK-GHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWTS-KL   84 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccc-cccceEEEEEEccCCceeccCCCc-----eeEEEecc-cc
Confidence            899999999999999999999999998877765  7887 899999999999999999999999     99999983 33


Q ss_pred             ceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650          167 RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (403)
Q Consensus       167 ~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~  244 (403)
                      +-+..+.|...|.|+.|+|-...++  +=+..-+|........+ .+ ....+.+++|..||.  +++. |..+|+|.+-
T Consensus        85 EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGq--ylal-G~~nGTIsiR  159 (1081)
T KOG1538|consen   85 EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQ--YLAL-GMFNGTISIR  159 (1081)
T ss_pred             cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-hh-hheeEEEeeecCCCc--EEEE-eccCceEEee
Confidence            4445566999999999999887777  44567788865433221 11 122334455555554  5554 5588999987


Q ss_pred             EccCCceeEEe---ecCCceEEEEEcCCC-----CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 015650          245 HYASKRTKFIM---AHDSRIACFALTQDG-----QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (403)
Q Consensus       245 d~~~~~~~~~~---~~~~~i~~~~~sp~g-----~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  316 (403)
                      +-...+...+.   +.+.+|.+++|+|..     ..++......+ +.++.+ +|+.+..-+.  -.-...++.+-++|.
T Consensus       160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NGE  235 (1081)
T KOG1538|consen  160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNGE  235 (1081)
T ss_pred             cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCCc
Confidence            65554444443   467889999999953     46777778788 888876 5665543332  223467899999999


Q ss_pred             EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEE
Q 015650          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV  396 (403)
Q Consensus       317 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~  396 (403)
                      +++.|+.|+.+++|--+--.                                    ..++..-+..++.|+..|++++++
T Consensus       236 y~LiGGsdk~L~~fTR~Gvr------------------------------------LGTvg~~D~WIWtV~~~PNsQ~v~  279 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFTRDGVR------------------------------------LGTVGEQDSWIWTVQAKPNSQYVV  279 (1081)
T ss_pred             EEEEccCCCceEEEeecCeE------------------------------------EeeccccceeEEEEEEccCCceEE
Confidence            99999999999998543221                                    111111234688899999999999


Q ss_pred             EEccCCC
Q 015650          397 ILGMDGR  403 (403)
Q Consensus       397 ~~~~dG~  403 (403)
                      .|+.|||
T Consensus       280 ~GCqDGT  286 (1081)
T KOG1538|consen  280 VGCQDGT  286 (1081)
T ss_pred             EEEccCe
Confidence            9999997

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=9.6e-20  Score=146.56  Aligned_cols=293  Identities=17%  Similarity=0.198  Sum_probs=197.0

Q ss_pred             CEEEEEc-----CCcEEEEEcCCCeeE-EEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCC--CceEEEEECCCC--
Q 015650           98 GCFAAGT-----DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP--LNKVMIWDDHQS--  166 (403)
Q Consensus        98 ~~l~~~~-----~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~--~~~i~iwd~~~~--  166 (403)
                      -.+.+|.     ++.|.+.+++..... ..+.|. ++...|..++-+|- ...+++.-.+....  ...+.||.+...  
T Consensus        27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~-h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~  105 (370)
T KOG1007|consen   27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFF-HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG  105 (370)
T ss_pred             eEEEEeccccCCcceeEEEEecCccchhhhhhhh-cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence            3455554     455888877655433 334454 77888999888774 33444433321111  135789987543  


Q ss_pred             -------ceeEEEe--cCCceeEEEEecCceEEE--ecCeEEEEEcCCcee-eeEeec-----cCCCceeEEEeeCCCeE
Q 015650          167 -------RCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKL-LHQIET-----IANPKGLCAVSQGVGSL  229 (403)
Q Consensus       167 -------~~~~~~~--~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~  229 (403)
                             +++..+.  +-+.|.++.|.|++..++  .|+.|.+|++..+.. +..+..     +......-+|+|..+..
T Consensus       106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn  185 (370)
T KOG1007|consen  106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN  185 (370)
T ss_pred             ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence                   3344444  456899999999988777  699999999987655 333321     23345567888866655


Q ss_pred             EEEeeCCccCeEEEEEccCCce--eEEeecCCceEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCccc
Q 015650          230 VLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAE  305 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~  305 (403)
                      .+++  ..|+++..||+++...  ..-.+|...+..+.|+|+.. +|++|+.||. |+|||++.. .++.++.+  |...
T Consensus       186 qv~t--t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~--HsHW  260 (370)
T KOG1007|consen  186 QVAT--TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPG--HSHW  260 (370)
T ss_pred             eEEE--eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCccccccCC--CceE
Confidence            5665  3589999999998432  33457999999999999765 5788999999 999999864 46666665  6779


Q ss_pred             EEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCCCC-CCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCc
Q 015650          306 IYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEP-RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP  383 (403)
Q Consensus       306 v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (403)
                      |+++.|+|.. ++|++++.|..|.+|....-..++.++. ....+....++.-+. + .|     ..-.+.++..|++.|
T Consensus       261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~-k-pL-----~dg~l~tydehEDSV  333 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV-K-PL-----QDGQLETYDEHEDSV  333 (370)
T ss_pred             EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc-c-cc-----cccccccccccccce
Confidence            9999999954 5678999999999999877665554442 222222221111110 0 11     112244577889999


Q ss_pred             eEEEecc-CCCEEEEEccCCC
Q 015650          384 YIVAFGH-QKNTVVILGMDGR  403 (403)
Q Consensus       384 ~~~~fs~-d~~~l~~~~~dG~  403 (403)
                      ++++||. |.-.+|+-+.||.
T Consensus       334 Y~~aWSsadPWiFASLSYDGR  354 (370)
T KOG1007|consen  334 YALAWSSADPWIFASLSYDGR  354 (370)
T ss_pred             EEEeeccCCCeeEEEeccCce
Confidence            9999966 6777889999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=7.7e-20  Score=147.51  Aligned_cols=206  Identities=17%  Similarity=0.244  Sum_probs=160.3

Q ss_pred             CcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCc----------eeEEE--e----cCCceeEEEEec--Cc
Q 015650          127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSR----------CIGEL--S----FRSEVRSVKLRR--DR  187 (403)
Q Consensus       127 ~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~----------~~~~~--~----~~~~i~~~~~~~--~~  187 (403)
                      .|...|.++...+ .+.++++|+.|     |.|.+||++...          .+..+  +    |...|..+.|-|  .|
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            3556666666654 58899999999     999999987542          11111  1    667899999998  34


Q ss_pred             eEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC-eEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEE
Q 015650          188 IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIAC  263 (403)
Q Consensus       188 ~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~  263 (403)
                      .+..  .|.++++||.++.+....|+. .+.++.-+++|-.. +.+++ +|..+-.|++-|+..+.. ..+.+|.+.|.+
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA-~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIA-AGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             eeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEE-EecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            5544  699999999999888777753 56677888888665 44444 577899999999999765 568899999999


Q ss_pred             EEEcCCCCE-EEEEeCCCcEEEEEEcCCC-cEEEEEe------------cCCCcccEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650          264 FALTQDGQL-LATSSTKGTLVRIFNTLDG-TLLQEVR------------RGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (403)
Q Consensus       264 ~~~sp~g~~-l~s~~~dg~~i~iwd~~~~-~~~~~~~------------~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~i  329 (403)
                      +.|+|...+ |++|+.||. |++||++.. .+...+.            ...|.+.|++++|+.|+.++++++.|..+++
T Consensus       194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            999997765 589999999 999999754 3333332            2346788999999999999999999999999


Q ss_pred             EEeecCCCCCC
Q 015650          330 FNLKVNSGSAR  340 (403)
Q Consensus       330 wd~~~~~~~~~  340 (403)
                      |+..++++...
T Consensus       273 wn~~~G~ntl~  283 (397)
T KOG4283|consen  273 WNMESGRNTLR  283 (397)
T ss_pred             eecccCccccc
Confidence            99999986443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.2e-21  Score=178.64  Aligned_cols=245  Identities=15%  Similarity=0.215  Sum_probs=194.8

Q ss_pred             CCCCeEEEEEcCCCCE----EEEEcCCc-EEEEEcCCC----eeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCC
Q 015650           84 PPPTLLHISFNQDHGC----FAAGTDHG-FRIYNCDPF----REIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQY  153 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~----l~~~~~~~-i~iw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~  153 (403)
                      -..+-+.++|.+.|..    ||.|.++| |.+|+....    +.....++. .|...|..+.|++... .+++|+.+   
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~---  138 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADD---  138 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCC---
Confidence            3456788999988765    77777666 999997642    222223444 6899999999999655 99999999   


Q ss_pred             CCceEEEEECCCCceeEEEe---cCCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEeeccCC--CceeEEEee
Q 015650          154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQ  224 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~  224 (403)
                        |.|.|||+.+-+.-..+.   ..+.|.+++|+..-. +++   .+|++.|||++..+.+-.+..+..  .+..++|+|
T Consensus       139 --geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP  216 (1049)
T KOG0307|consen  139 --GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP  216 (1049)
T ss_pred             --CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence              999999998755444442   567899999998654 444   477999999998877777655444  356899999


Q ss_pred             CCCeEEEEeeCC-ccCeEEEEEccC--CceeEEeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650          225 GVGSLVLVCPGL-QKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       225 ~~~~~~~~~~g~-~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (403)
                      +....+++++++ ..-.|.+||+|.  ...+.+.+|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+..+.. 
T Consensus       217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~-  294 (1049)
T KOG0307|consen  217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA-  294 (1049)
T ss_pred             CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC-
Confidence            987777666442 335799999987  5567788999999999999966 88999999999 99999999999999986 


Q ss_pred             CCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCC
Q 015650          301 ADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       301 ~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~  337 (403)
                       ....+..+.|.|... .|++++-||.|.|+.+.....
T Consensus       295 -~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  295 -QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             -CCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence             457899999999776 788899999999999988763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=1.4e-19  Score=160.27  Aligned_cols=238  Identities=13%  Similarity=0.147  Sum_probs=165.1

Q ss_pred             EEEcC---CCCEEEEEcCCc-EEEEEcCCCeeEE----EEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           91 ISFNQ---DHGCFAAGTDHG-FRIYNCDPFREIF----RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        91 i~~s~---d~~~l~~~~~~~-i~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      ..|++   ...+|+.+.+.| |.++|.....-..    .+.. ..|...|.++.|-+....|++.+.|     .++++||
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGD-----sT~r~Wd  128 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGD-----STIRPWD  128 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCC-----ceeeeee
Confidence            45543   235678887555 9999975432220    0222 2588999999999988889999888     9999999


Q ss_pred             CCCCceeEE--Ee-cCCceeEEEEecCceEEE----ecCeEEEEEcCCce--e-------------------------ee
Q 015650          163 DHQSRCIGE--LS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK--L-------------------------LH  208 (403)
Q Consensus       163 ~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~--~-------------------------~~  208 (403)
                      +++++++..  +. |...|.+++|.+....++    .||.|.|||++...  .                         +.
T Consensus       129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            999988876  44 999999999999876555    49999999987422  0                         00


Q ss_pred             EeeccCCCcee---EEEeeCCCeEEEEeeCCccCeEEEEEccCCce---------eEEeec---CCceEEEEEcCCCCEE
Q 015650          209 QIETIANPKGL---CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---------KFIMAH---DSRIACFALTQDGQLL  273 (403)
Q Consensus       209 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~---------~~~~~~---~~~i~~~~~sp~g~~l  273 (403)
                      ....+...+..   +.+..|..  .++++|..|+.|+|||++....         ..+..|   ...+.++..+..|.+|
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L  286 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL  286 (720)
T ss_pred             ccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence            01111222222   23333443  4666676799999999997332         112223   3357788888889999


Q ss_pred             EEEeCCCcEEEEEEcCCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          274 ATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       274 ~s~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ++.|.|+. |++||+.+..  ++..+.+......-..-..+||+.+|++|+.|...++|.+.+.+.
T Consensus       287 ~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  287 FASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             EEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence            99999999 9999997643  333343321112222335789999999999999999999999884

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=4.9e-20  Score=163.08  Aligned_cols=128  Identities=16%  Similarity=0.204  Sum_probs=94.6

Q ss_pred             CccccCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCee-EE---EEecccCcceeEEEEeeeC--CeEEEeeCC
Q 015650           77 AESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFRE-IF---RRDFERGGGIGVVEMLFRC--NILALVGGG  148 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~~~~~-~~---~~~~~~~~~~~v~~~~~~~--~~~~~~s~~  148 (403)
                      ...++..|.+.|+.+.|+|- ..+||+++ |..|+||.+..+.. .+   ...+ ++....+-++.|++  |++...++.
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~-g~~~~~vE~l~fHpTaDgil~s~a~  149 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDV-GGGNVIVECLRFHPTADGILASGAH  149 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceee-cCCceEEEEeecccCcCceEEeccC
Confidence            44678899999999999994 56788888 45599999963322 11   1222 35556777788877  444443333


Q ss_pred             CCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcCC-ceeeeEeec
Q 015650          149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-LKLLHQIET  212 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~-~~~~~~~~~  212 (403)
                             |.++|||+.+++.+..+. |...|.++.|+.||.+++.   |..|+|||.+. ++.++..++
T Consensus       150 -------g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  150 -------GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             -------ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccc
Confidence                   899999999999999988 9999999999999999993   77899999775 344443333

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=8.6e-20  Score=160.40  Aligned_cols=235  Identities=19%  Similarity=0.218  Sum_probs=187.6

Q ss_pred             cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceE--EE--ecCeE-----
Q 015650          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII--VV--LEQKI-----  196 (403)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~--~d~~i-----  196 (403)
                      .+|...+.++...+.+.++++|+.|     |+|+||.+.+|.+++++...+.|.+|+|+|.+..  ++  .+..+     
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            3899999999999999999999999     9999999999999999999999999999997532  22  22223     


Q ss_pred             ----------------------------EEEEcCCce----eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650          197 ----------------------------FVYNFADLK----LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (403)
Q Consensus       197 ----------------------------~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~  244 (403)
                                                  ..|.-...+    -+...-.|...+..+.|+..|+.+..++..+....|.|+
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence                                        334322100    012233456677888999999977776655566789999


Q ss_pred             EccCCcee-EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 015650          245 HYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (403)
Q Consensus       245 d~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~  323 (403)
                      .+.....+ .+....+.|.++.|+|...+|+.++...  |+|||+...++++++..  ....|..++.+|.|..|+.++.
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCeEEEecC
Confidence            98875543 3445678899999999999999888764  99999998888777765  3468999999999999999999


Q ss_pred             CCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       324 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      |+.+..||++-...                                  .+..++.|+..+..|+|++.-..+++|+.||+
T Consensus       628 d~k~~WfDldlssk----------------------------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  628 DKKMCWFDLDLSSK----------------------------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT  673 (733)
T ss_pred             CCeeEEEEcccCcc----------------------------------hhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence            99999999987652                                  14447888899999999999999999999986

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=4.1e-18  Score=138.43  Aligned_cols=256  Identities=16%  Similarity=0.237  Sum_probs=184.4

Q ss_pred             ecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC----ceeEEEe-cCCceeEEEEecC--ceEEE---e
Q 015650          123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRRD--RIIVV---L  192 (403)
Q Consensus       123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~----~~~~~~~-~~~~i~~~~~~~~--~~~~~---~  192 (403)
                      .+..+|..-|.++.|..-|..+++++.|     ++|+|||.+..    .+....+ |.+.|..+.|.+-  |..++   .
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~   81 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY   81 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence            3445788889999999999999999999     99999996543    3444455 9999999999763  77777   5


Q ss_pred             cCeEEEEEcCC---------ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ce------eEE--
Q 015650          193 EQKIFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RT------KFI--  254 (403)
Q Consensus       193 d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~------~~~--  254 (403)
                      |+++.||.-..         .....++......+..+.|.|..-++.+++.+ .||.++||+.... .+      ..+  
T Consensus        82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~-aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS-ADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec-cCcEEEEEecCCccccccchhhhhhhh
Confidence            99999998521         12344556667788999999999999888866 8999999986551 11      111  


Q ss_pred             -----eecCCceEEEEEcC---CCCEEEEEeCC-----CcEEEEEEcCCC--c--EEEEEecCCCcccEEEEEeCCCC--
Q 015650          255 -----MAHDSRIACFALTQ---DGQLLATSSTK-----GTLVRIFNTLDG--T--LLQEVRRGADRAEIYSLAFSSNA--  315 (403)
Q Consensus       255 -----~~~~~~i~~~~~sp---~g~~l~s~~~d-----g~~i~iwd~~~~--~--~~~~~~~~~~~~~v~~l~~s~d~--  315 (403)
                           ..+.....|+.|+|   ...+||.|+.+     +. ++||....+  +  .+.++.  .|..+|++|+|.|+-  
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGR  237 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcC--CCCCcceeeeeccccCC
Confidence                 13667788999997   34678888876     35 888876543  2  233444  478899999999953  


Q ss_pred             --CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCC
Q 015650          316 --QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (403)
Q Consensus       316 --~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~  393 (403)
                        .+||+++.|| |+||++.........+..     .+++        .+.++  ...-+.++..|.+.|..+.|.--|.
T Consensus       238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~-----~~~~--------~~~~l--~v~~vs~~~~H~~~VWrv~wNmtGt  301 (361)
T KOG2445|consen  238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEV-----LAPD--------LMTDL--PVEKVSELDDHNGEVWRVRWNMTGT  301 (361)
T ss_pred             ceeeEEEeecCc-EEEEEEeeccchhhhhcc-----cCCC--------Ccccc--ceEEeeeccCCCCceEEEEEeeeee
Confidence              4799999999 999999865421111000     0000        00000  1122455777888999999999999


Q ss_pred             EEEEEccCCC
Q 015650          394 TVVILGMDGR  403 (403)
Q Consensus       394 ~l~~~~~dG~  403 (403)
                      .|++.|.||.
T Consensus       302 iLsStGdDG~  311 (361)
T KOG2445|consen  302 ILSSTGDDGC  311 (361)
T ss_pred             EEeecCCCce
Confidence            9999999994

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=7.4e-20  Score=165.33  Aligned_cols=237  Identities=14%  Similarity=0.164  Sum_probs=179.6

Q ss_pred             eEEEEEcC-CCCEEEEEcCCc-EEEEEcCCC-eeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEEC
Q 015650           88 LLHISFNQ-DHGCFAAGTDHG-FRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        88 i~~i~~s~-d~~~l~~~~~~~-i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      +..+.|.. +..+||+++.+| |.+||+... .......|. .|...+..+.|+.- -.+|++|+.|     |.|++||+
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQD-----g~vK~~Dl  163 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQD-----GTVKCWDL  163 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCC-----ceEEEEee
Confidence            44567753 457899998777 999999752 122224454 79999999999774 5678999999     99999999


Q ss_pred             CCCceeEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          164 HQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       164 ~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      +..+...++. ..+.|++|.|+|. +..++   -.|.+.+||++.. ++...+..|.+++.++.|+|+.  .++|++| .
T Consensus       164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr--~~lATGG-R  240 (839)
T KOG0269|consen  164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR--EWLATGG-R  240 (839)
T ss_pred             ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC--ceeeecC-C
Confidence            9998888877 7889999999984 33333   3789999999874 5667788999999999999954  4778755 9


Q ss_pred             cCeEEEEEccCCceeE--EeecCCceEEEEEcCCCCE-EEEEeC--CCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEe
Q 015650          238 KGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQL-LATSST--KGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAF  311 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~-l~s~~~--dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~  311 (403)
                      |+.|+|||+.+.+...  ......++.+++|-|+..+ |++++.  |-. |+|||++..- +..++..  |...++.++|
T Consensus       241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts-V~VWDvrRPYIP~~t~~e--H~~~vt~i~W  317 (839)
T KOG0269|consen  241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS-VHVWDVRRPYIPYATFLE--HTDSVTGIAW  317 (839)
T ss_pred             CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce-EEEEeeccccccceeeec--cCccccceec
Confidence            9999999998744322  2234568999999997665 555543  556 9999997643 3445554  7789999999


Q ss_pred             CC-CCCEEEEEeCCCcEEEEEeecCC
Q 015650          312 SS-NAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       312 s~-d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .. |-..|.+++.||+|..-.+++..
T Consensus       318 ~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  318 DSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             cCCCceeeEeecCccHHHHhhhhccc
Confidence            75 44578899999998776666554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=9.5e-19  Score=142.53  Aligned_cols=193  Identities=13%  Similarity=0.150  Sum_probs=159.2

Q ss_pred             EEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceee
Q 015650          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL  207 (403)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~  207 (403)
                      ..++.|++.|.+++.|..+     |.|.|||+.+...-+.+. |-.+|.+++|++||+.++   .|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            7889999999999999999     999999999998888888 999999999999999988   4899999999999999


Q ss_pred             eEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeec-----CCceEEEEEcCCCCEEEEEeCCCcE
Q 015650          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-----DSRIACFALTQDGQLLATSSTKGTL  282 (403)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~-----~~~i~~~~~sp~g~~l~s~~~dg~~  282 (403)
                      +.+. ...++..+.|+|...+..+++.-  +..-.+.++.......+...     .....+..|.+.|+++++|...|. 
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk-  176 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK-  176 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence            8885 46789999999998888888733  33344445544332222211     112233468999999999999999 


Q ss_pred             EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      +.++|..+.+++..++.. ....|..+.++..|+.|+.-+.|..|+.|+++.
T Consensus       177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence            999999999999988853 236799999999999999999999999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=5.8e-17  Score=144.70  Aligned_cols=255  Identities=11%  Similarity=0.112  Sum_probs=165.0

Q ss_pred             EcCCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeC-CCCCCCCCceEEEEECC-CCce--eEEEecCCc
Q 015650          103 GTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQYPLNKVMIWDDH-QSRC--IGELSFRSE  177 (403)
Q Consensus       103 ~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~-~~d~~~~~~~i~iwd~~-~~~~--~~~~~~~~~  177 (403)
                      +.+++|++|++.+ ++......+.  .......+.+++++..++.+ ..+     +.|.+|++. +++.  +........
T Consensus         9 ~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~   81 (330)
T PRK11028          9 PESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGS   81 (330)
T ss_pred             CCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCC
Confidence            3467799999964 3333334454  33456677888887765443 344     889999986 3432  223334456


Q ss_pred             eeEEEEecCceEEE----ecCeEEEEEcCC-ce---eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-
Q 015650          178 VRSVKLRRDRIIVV----LEQKIFVYNFAD-LK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-  248 (403)
Q Consensus       178 i~~~~~~~~~~~~~----~d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-  248 (403)
                      ...++++|++++++    .++.|.+|++.+ +.   .+..+.. ......++++|+++.++++.  ..++.|.+||++. 
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~  158 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPC--LKEDRIRLFTLSDD  158 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEee--CCCCEEEEEEECCC
Confidence            77899999998777    378999999964 32   2222222 22345678899888765554  5678999999976 


Q ss_pred             CceeE-----Ee-ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCC--Cc--EEEEEecCC----CcccEEEEEeCC
Q 015650          249 KRTKF-----IM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD--GT--LLQEVRRGA----DRAEIYSLAFSS  313 (403)
Q Consensus       249 ~~~~~-----~~-~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~--~~--~~~~~~~~~----~~~~v~~l~~s~  313 (403)
                      +.+..     .. ........++|+|+|++|++++. ++. |.+||+..  ++  .+..+....    +......+.|+|
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            32211     11 12344678999999999988876 677 99999973  32  333333210    112234689999


Q ss_pred             CCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650          314 NAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (403)
Q Consensus       314 d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~  392 (403)
                      +|++|+++. .++.|.+|+++......++                               +..... ......++|+|||
T Consensus       238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~-------------------------------~~~~~~-~~~p~~~~~~~dg  285 (330)
T PRK11028        238 DGRHLYACDRTASLISVFSVSEDGSVLSF-------------------------------EGHQPT-ETQPRGFNIDHSG  285 (330)
T ss_pred             CCCEEEEecCCCCeEEEEEEeCCCCeEEE-------------------------------eEEEec-cccCCceEECCCC
Confidence            999999885 4789999999865421100                               111111 2345578999999


Q ss_pred             CEEEEEcc
Q 015650          393 NTVVILGM  400 (403)
Q Consensus       393 ~~l~~~~~  400 (403)
                      ++|++++.
T Consensus       286 ~~l~va~~  293 (330)
T PRK11028        286 KYLIAAGQ  293 (330)
T ss_pred             CEEEEEEc
Confidence            99998875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.82  E-value=4.3e-19  Score=141.08  Aligned_cols=276  Identities=12%  Similarity=0.150  Sum_probs=186.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      -.+++|.+.|+++.|..+++ |..|...| |.+|.+.+........+  .+...|+.+..-++ ..+.+-++|     ..
T Consensus         8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd-----~~   78 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRD-----PL   78 (323)
T ss_pred             eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCC-----ce
Confidence            45668999999999988776 66677666 99999988777644333  47778888887777 567888888     99


Q ss_pred             EEEEECCCCceeEEEecCCceeEEEEe-----cCce----EEEe--cC--eEEEEEcCCceeeeEee----ccCCCceeE
Q 015650          158 VMIWDDHQSRCIGELSFRSEVRSVKLR-----RDRI----IVVL--EQ--KIFVYNFADLKLLHQIE----TIANPKGLC  220 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~~~~~i~~~~~~-----~~~~----~~~~--d~--~i~i~d~~~~~~~~~~~----~~~~~~~~~  220 (403)
                      +.+|++.-+..+..-  .-.++++.|.     ++.+    .++.  .+  .+.+-|......+...+    ...+.+.+.
T Consensus        79 L~lw~ia~s~~i~i~--Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   79 LILWTIAYSAFISIH--SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EEEEEccCcceEEEe--eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence            999998775543322  2233333332     2211    1221  11  12222322211121111    112233333


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCCc-----------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-----------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      .+.......+++.+|.++|.+.+||+..+.           ......|..++.++.|.+.-..=++|+.+.. +..|++.
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~  235 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLN  235 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeec
Confidence            333333344455568899999999998842           2234568999999999875555567787777 8899876


Q ss_pred             CC--cE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccc
Q 015650          290 DG--TL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (403)
Q Consensus       290 ~~--~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (403)
                      ..  .+  ..++..  ..-.|..+.+.||++.+|+++.|+.|+||..++..+                            
T Consensus       236 ~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p----------------------------  285 (323)
T KOG0322|consen  236 HSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP----------------------------  285 (323)
T ss_pred             cccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCc----------------------------
Confidence            32  22  112221  224688999999999999999999999999999985                            


Q ss_pred             eeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                             ++.++.|.+.++++||+||.+.+|.++.|++
T Consensus       286 -------LAVLkyHsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  286 -------LAVLKYHSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             -------hhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence                   3446788899999999999999999999974

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.82  E-value=9.5e-19  Score=155.01  Aligned_cols=248  Identities=14%  Similarity=0.126  Sum_probs=170.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCc
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~  156 (403)
                      .....|.+.|..+.|.|....|++++ |.++++||++..+..-...+. +|...+.+++|.+. ...+++|++|     |
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRD-----g  167 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRD-----G  167 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCC-----C
Confidence            55677999999999999556677665 667999999987766544454 89999999999884 5678899999     9


Q ss_pred             eEEEEECCCCc--------------------eeE-------EEe-cCCceeE---EEEecCceEEE----ecCeEEEEEc
Q 015650          157 KVMIWDDHQSR--------------------CIG-------ELS-FRSEVRS---VKLRRDRIIVV----LEQKIFVYNF  201 (403)
Q Consensus       157 ~i~iwd~~~~~--------------------~~~-------~~~-~~~~i~~---~~~~~~~~~~~----~d~~i~i~d~  201 (403)
                      .|.|||++-..                    ...       .-. +...|.+   +.+..|...|+    .|+.|++||+
T Consensus       168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence            99999974321                    000       001 2333444   55556666666    3999999999


Q ss_pred             CCceeeeE--------eecc-CCCceeEEE--eeCCCeEEEEeeCCccCeEEEEEccCCceeE---EeecCCc--eEEEE
Q 015650          202 ADLKLLHQ--------IETI-ANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSR--IACFA  265 (403)
Q Consensus       202 ~~~~~~~~--------~~~~-~~~~~~~~~--~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~---~~~~~~~--i~~~~  265 (403)
                      ++......        +..+ ...+..+.+  ...|..++..   +.|+.|++|++....+..   +.++...  -..-.
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As---CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~  324 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS---CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE  324 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE---ecCCcEEEEeccccCcCchhhccCcccceeeeeee
Confidence            97533221        1112 112333444  4444554433   369999999998844333   2222211  11224


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCC
Q 015650          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .+||+.+|++|+.|.. .++|.+.+.+.-..+..+ |.-.|++++|.|... -++++++|..++||++..+-+
T Consensus       325 lSpd~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  325 LSPDDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG-HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE  395 (720)
T ss_pred             cCCCCceEeccCCCcc-eeeeeecCccCChhhhhC-cceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence            6899999999999999 999999887654444433 778999999988433 467779999999999966544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=1.1e-18  Score=140.54  Aligned_cols=249  Identities=14%  Similarity=0.129  Sum_probs=183.6

Q ss_pred             CCCccccCCCCCCeEEEEEcCCC-CEEEEEcC----C----cEEEEEcCCCeeE-------EEEecccCcceeEEEEeee
Q 015650           75 SPAESTSSSPPPTLLHISFNQDH-GCFAAGTD----H----GFRIYNCDPFREI-------FRRDFERGGGIGVVEMLFR  138 (403)
Q Consensus        75 ~~~~~~~~~~~~~i~~i~~s~d~-~~l~~~~~----~----~i~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~  138 (403)
                      ....+.+..|.+.|..++-+|-. ++|+++..    .    ++.||.+......       ....+...+-..+.++.|.
T Consensus        53 ~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~  132 (370)
T KOG1007|consen   53 ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWE  132 (370)
T ss_pred             hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEc
Confidence            34457788899999999999955 56666542    2    2789998532211       1122322344588999999


Q ss_pred             CCeEEEeeCCCCCCCCCceEEEEECCCCce-eEEEe------cCCceeEEEEec--CceEEE--ecCeEEEEEcCCceee
Q 015650          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS------FRSEVRSVKLRR--DRIIVV--LEQKIFVYNFADLKLL  207 (403)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~-~~~~~------~~~~i~~~~~~~--~~~~~~--~d~~i~i~d~~~~~~~  207 (403)
                      |++..+++-.+      ..|.+|++..+.. +..+.      +....++-+|+|  |+..++  .|+++..||+++.++.
T Consensus       133 Pns~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~  206 (370)
T KOG1007|consen  133 PNSDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN  206 (370)
T ss_pred             CCCCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence            99999888874      7999999988765 44443      355677888988  677666  6999999999998777


Q ss_pred             eEe-eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEE
Q 015650          208 HQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLV  283 (403)
Q Consensus       208 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i  283 (403)
                      ..+ ..|...+..+.|+|+... +++++| .||.|++||.+.  ..++.+.+|..++.++.|+|. ..+|++|+.|.. |
T Consensus       207 ~sI~dAHgq~vrdlDfNpnkq~-~lvt~g-DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V  283 (370)
T KOG1007|consen  207 NSIEDAHGQRVRDLDFNPNKQH-ILVTCG-DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-V  283 (370)
T ss_pred             cchhhhhcceeeeccCCCCceE-EEEEcC-CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-e
Confidence            666 457777888888887654 455545 899999999997  456778899999999999994 567789999999 9


Q ss_pred             EEEEcCCC-----------------------------cEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEee
Q 015650          284 RIFNTLDG-----------------------------TLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       284 ~iwd~~~~-----------------------------~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~  333 (403)
                      .+|-..+-                             ..+.++..  |+..|.+++||.-.. ++|+-+.||.+.|=.+.
T Consensus       284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             EEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            99965321                             01223443  778999999997655 56788999999886665


Q ss_pred             c
Q 015650          334 V  334 (403)
Q Consensus       334 ~  334 (403)
                      .
T Consensus       362 r  362 (370)
T KOG1007|consen  362 R  362 (370)
T ss_pred             h
Confidence            3

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=6e-19  Score=151.93  Aligned_cols=214  Identities=11%  Similarity=0.181  Sum_probs=172.9

Q ss_pred             EEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        89 ~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      .|++......++++|+-++ |+|||+..  +.+.+.+. +|...|+.+.++....++++++..     |.|.|..+.++.
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t~~  154 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKTKQ  154 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHH--HHHhhhcc-CCcceeEEEEecCCcceeEEeccC-----CcEEEEecccCc
Confidence            4444444558888888555 99999973  33335665 899999999999999999999988     999999999999


Q ss_pred             eeEEEec--CCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650          168 CIGELSF--RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       168 ~~~~~~~--~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      ....|.+  ...|.-+.|++..+.+.    .+|.|.+||.....++..+ +.|..+...+||+|....++ ++.| .|..
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~-vsVG-~Dkk  232 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL-VSVG-YDKK  232 (673)
T ss_pred             cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE-EEec-ccce
Confidence            8888884  45677899999877766    3899999999876666554 67888999999999887654 4446 8999


Q ss_pred             EEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEeCCCC
Q 015650          241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNA  315 (403)
Q Consensus       241 i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~d~  315 (403)
                      |.+||.+.+..........+...++|+++|.+|++|+..|. |..||++..+ ++..+..  |...|++++|-+..
T Consensus       233 i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sa--h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  233 INIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSA--HDASVTRVAFQPSP  305 (673)
T ss_pred             EEEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeee--cccceeEEEeeecc
Confidence            99999998766555556778999999999999999999999 9999998755 4545543  77889999998764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=147.47  Aligned_cols=198  Identities=16%  Similarity=0.135  Sum_probs=147.9

Q ss_pred             CcceeEEEEeeeCC--eEEEeeCCCCCCCCCceEEEEECCCCc----eeEEEe-cCCceeEEEEecCc--eEEE--ecCe
Q 015650          127 GGGIGVVEMLFRCN--ILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDR--IIVV--LEQK  195 (403)
Q Consensus       127 ~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~--~~~~--~d~~  195 (403)
                      -+...|.++.|+|.  ...++.|+..     |+|-+||+.+.+    -+..+. |..+|.++.|+|.+  +++.  .||+
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~-----G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKG-----GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCC-----CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            36678999999885  3577788877     999999995332    233444 89999999999953  3333  6999


Q ss_pred             EEEEEcCCcee--eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc--eeEEeecCCceEEEEEcCC-C
Q 015650          196 IFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQD-G  270 (403)
Q Consensus       196 i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp~-g  270 (403)
                      |++-|++....  +.........+..+.++.+....+++   ..-|...+||++...  ...+.-|...|.+|+++|. .
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~---~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFG---DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEe---ecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence            99999987532  33333233445556666666654443   355699999999843  4556778889999999995 4


Q ss_pred             CEEEEEeCCCcEEEEEEcCCCcEEEE--EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          271 QLLATSSTKGTLVRIFNTLDGTLLQE--VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~~~~~~~~~--~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      .+||+++.|++ ++|||++.......  +..-.|...|.+..|||++..|++.+.|..|+|||..
T Consensus       336 ~~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  336 WFLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hheeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            67899999999 99999986432221  3333388899999999999889999999999999994

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=8e-18  Score=141.60  Aligned_cols=252  Identities=16%  Similarity=0.155  Sum_probs=180.4

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcC--------C------CeeEEEEecccCcceeEEEEeeeCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD--------P------FREIFRRDFERGGGIGVVEMLFRCN  140 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~--------~------~~~~~~~~~~~~~~~~v~~~~~~~~  140 (403)
                      .-...+..|..+|+++.|+|+|.+||+|+|++ |.+|...        +      ...+..+.+. +|...+..++|+++
T Consensus        56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d  134 (434)
T KOG1009|consen   56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPD  134 (434)
T ss_pred             EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCC
Confidence            33467889999999999999999999999888 9999865        2      1223335554 79999999999999


Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEee-----
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE-----  211 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-----  211 (403)
                      +.++++++-|     +.+++||+..|+....+. |...+..++|.|-+.+++   .|...+.+.+...+.++...     
T Consensus       135 ~~~l~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~  209 (434)
T KOG1009|consen  135 SNFLVSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP  209 (434)
T ss_pred             Cceeeeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence            9999999999     999999999999999988 999999999999999888   46656666654432222111     


Q ss_pred             ---ccC---------------CCceeEEEeeCCCeEEEEe-eCC--c-----cCeEEEEEccC--CceeEEeecCCceEE
Q 015650          212 ---TIA---------------NPKGLCAVSQGVGSLVLVC-PGL--Q-----KGQVRVEHYAS--KRTKFIMAHDSRIAC  263 (403)
Q Consensus       212 ---~~~---------------~~~~~~~~~~~~~~~~~~~-~g~--~-----d~~i~v~d~~~--~~~~~~~~~~~~i~~  263 (403)
                         .+.               .-..-++|+|++.-  +++ +|.  .     -+..++|+-..  .....+..-..+...
T Consensus       210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l--lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~la  287 (434)
T KOG1009|consen  210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL--LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALA  287 (434)
T ss_pred             ecccCCCCcceeeeeecCchhhhhhhcccCCCCcE--EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEE
Confidence               000               01123577777653  332 111  0     12233443322  222333344444555


Q ss_pred             EEEcC------------------CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          264 FALTQ------------------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       264 ~~~sp------------------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      +.|+|                  -+-.+|.++.+.  |+|||.++.+++.....- |-..|++++|++||..|+..+.||
T Consensus       288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s--vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS--VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             EEeeeeEEEeccccccccccccccceEEEEeecce--EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCC
Confidence            55544                  234566677664  999999998888777653 778999999999999999999999


Q ss_pred             cEEEEEeecCCCC
Q 015650          326 TVHVFNLKVNSGS  338 (403)
Q Consensus       326 ~v~iwd~~~~~~~  338 (403)
                      ..-+--++..+..
T Consensus       365 yCS~vtfe~~elg  377 (434)
T KOG1009|consen  365 FCSLVTFEPWELG  377 (434)
T ss_pred             ceEEEEEcchhcc
Confidence            9999888877653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=1.6e-18  Score=150.79  Aligned_cols=254  Identities=14%  Similarity=0.180  Sum_probs=182.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEE-cCCCeeEEEEecccCcceeEEEEee-------eCCeEEEeeCCCCCCCC
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYN-CDPFREIFRRDFERGGGIGVVEMLF-------RCNILALVGGGPDPQYP  154 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~-~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~s~~~d~~~~  154 (403)
                      .|...|.|+.|+.....+.+++|+.+.+|. +.+..... ..+.  ...-.+.+..       ......++.++.|    
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~-~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~D----   84 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEV-AKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSND----   84 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhh-hhCC--cccCCccccccccccCCCCCcceEEEEcCC----
Confidence            466777899999998899888888865554 43222211 1111  1110111111       0122334444555    


Q ss_pred             CceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                       |.+.|.+ +.++..+.+. |.+.+.+-.|+|||.-++   .||.|++|. ++|-+..++-....++++++|.|+.+..+
T Consensus        85 -Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   85 -GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             -ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence             8998887 6677667777 999999999999998777   599999999 56665555656678899999999988765


Q ss_pred             EEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          231 LVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                      + |   ..+.+.+-.+.. .++...++|.+-|.++.|++...++++|++|-. .+|||. -|..+..-.  .|+.+|+++
T Consensus       162 ~-c---~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~--~~ey~ITSv  233 (737)
T KOG1524|consen  162 F-C---QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSA--AEEYAITSV  233 (737)
T ss_pred             E-e---cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCC--hhccceeee
Confidence            4 3   336677766654 456778999999999999999999999999999 999995 466554443  478899999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEec
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs  389 (403)
                      +|.|+ +.++.++.. +++   ++++.                                           .+++..++||
T Consensus       234 a~npd-~~~~v~S~n-t~R---~~~p~-------------------------------------------~GSifnlsWS  265 (737)
T KOG1524|consen  234 AFNPE-KDYLLWSYN-TAR---FSSPR-------------------------------------------VGSIFNLSWS  265 (737)
T ss_pred             eeccc-cceeeeeee-eee---ecCCC-------------------------------------------ccceEEEEEc
Confidence            99999 666666533 344   33332                                           3567789999


Q ss_pred             cCCCEEEEEccCC
Q 015650          390 HQKNTVVILGMDG  402 (403)
Q Consensus       390 ~d~~~l~~~~~dG  402 (403)
                      +||..++.|+..|
T Consensus       266 ~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  266 ADGTQATCGTSTG  278 (737)
T ss_pred             CCCceeeccccCc
Confidence            9999999999887

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.3e-17  Score=138.38  Aligned_cols=300  Identities=14%  Similarity=0.136  Sum_probs=207.6

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCC------eeEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF------REIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (403)
                      .-++...+|.+.|++|.|+.++++|++|+|+. ++||+++..      +.+  ......|...|.++.|.....++++|+
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI--~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI--GVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc--eeccCccccceEEEEEccCCeeEecCC
Confidence            34466789999999999999999999999766 999998521      222  222235668999999999999999999


Q ss_pred             CCCCCCCceEEEEECCCCceeEEEecC---CceeEEEEecCceEEE---ecCeEEEEEcCCce-eeeE--eeccCCCcee
Q 015650          149 PDPQYPLNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-LLHQ--IETIANPKGL  219 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~-~~~~--~~~~~~~~~~  219 (403)
                      .+     ++|..-|+++.+.+..+.|.   +.|..+..+|....++   -++.|.+||.+... .+..  ..........
T Consensus       125 ~~-----~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t  199 (609)
T KOG4227|consen  125 RW-----GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT  199 (609)
T ss_pred             Cc-----ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence            99     99999999999999888854   4899999999554444   38899999998643 2222  2223445667


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE--------EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~--------~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~  291 (403)
                      +.|+|....++++.  +..+-+.+||.+......        +......-.++.|+|.|..|.+--.... -.+||+-+.
T Consensus       200 ~~F~P~~P~Li~~~--~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~  276 (609)
T KOG4227|consen  200 AEFHPETPALILVN--SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQ  276 (609)
T ss_pred             eeecCCCceeEEec--cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecc
Confidence            88888877665543  467889999998744211        1121222356789999999887655444 668888775


Q ss_pred             cEE-EEEecCCC-----cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC--CCCCCCCCCCCCcccccccccccc
Q 015650          292 TLL-QEVRRGAD-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA--RSEPRSTSDPTLPTSSLSFIKGVL  363 (403)
Q Consensus       292 ~~~-~~~~~~~~-----~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  363 (403)
                      ++. ..+. +..     ...+.+++|.-|. .+++|+++-.|++|.+......-  +..++....             ..
T Consensus       277 R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~-------------~~  341 (609)
T KOG4227|consen  277 RCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE-------------MP  341 (609)
T ss_pred             cceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhh-------------Cc
Confidence            543 2222 111     1256778887554 49999999999999997544210  001111111             00


Q ss_pred             cceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                      .++| -...+..+++|..-++.|.|+|..+.|++.+..
T Consensus       342 ~~~~-i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE  378 (609)
T KOG4227|consen  342 SEIF-IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVE  378 (609)
T ss_pred             hhhe-ecceeEEEecccccccceeecCCcceEeccchh
Confidence            1111 122355689999999999999999988887653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=7.4e-16  Score=142.51  Aligned_cols=245  Identities=21%  Similarity=0.355  Sum_probs=190.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe-eEEEEecccCcceeEEEEee-eCCeE-EEee-CCCCCCCC
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLF-RCNIL-ALVG-GGPDPQYP  154 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~s-~~~d~~~~  154 (403)
                      ....|...|.++.|.+.+..++.++ ++.+.+|+..... ..  ..+...+...+..+.+ .+++. .++. ...+    
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI--KSLEGLHDSSVSKLALSSPDGNSILLASSSLD----  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE--EEEeccCCCceeeEEEECCCcceEEeccCCCC----
Confidence            5678999999999999999999887 6669999987765 22  3333112234555555 55554 4444 4446    


Q ss_pred             CceEEEEECCC-CceeEEEe-cCCceeEEEEecCceEEE---e-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          155 LNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       155 ~~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                       +.+.+|+... ......+. |...|..+.|++++.+++   . |+.+++|++..++.+..+..|...+..+++++++. 
T Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  211 (466)
T COG2319         134 -GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG-  211 (466)
T ss_pred             -ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc-
Confidence             8999999988 66666666 899999999999997655   2 88999999998888888888899999999997776 


Q ss_pred             EEEEeeCCccCeEEEEEccCCcee--EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE-EEEEecCCCccc
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAE  305 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~  305 (403)
                      .+++ ++..|+.|++||...+...  .+..|.... ...|+|++.++++++.|+. +++|++..... +..+.  .|...
T Consensus       212 ~~~~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~--~~~~~  286 (466)
T COG2319         212 LLIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLS--GHSSS  286 (466)
T ss_pred             eEEE-EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEe--cCCcc
Confidence            2333 2458999999988865544  367777775 4489999989999999999 99999987665 44442  36789


Q ss_pred             EEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |.++.|.|++..+++++.|+.+++|++.+...
T Consensus       287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence            99999999999998888889999998877763

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=4.7e-17  Score=137.06  Aligned_cols=273  Identities=15%  Similarity=0.187  Sum_probs=187.6

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCC-------eeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           84 PPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~-~l~~~~-~~~i~iw~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      ...+|..+.|.++.. .|++|+ |..|+||.++..       +..+...|. .|...+..+.|++++..+++++++    
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~D~----   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGGDG----   86 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecCCC----
Confidence            346799999998876 889887 666999988422       234445565 799999999999999999999999    


Q ss_pred             CceEEEEECC--------C-----C---ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccC
Q 015650          155 LNKVMIWDDH--------Q-----S---RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA  214 (403)
Q Consensus       155 ~~~i~iwd~~--------~-----~---~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~  214 (403)
                       |.|.+|-..        +     .   ...+.+. |...|..++|++++.+++   .|+.+++||+..|+....+..|.
T Consensus        87 -g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~  165 (434)
T KOG1009|consen   87 -GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE  165 (434)
T ss_pred             -ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence             999999765        2     1   1122333 889999999999999998   59999999999999999999999


Q ss_pred             CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE------E--------------eecCC----ceEEEEEcCCC
Q 015650          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------I--------------MAHDS----RIACFALTQDG  270 (403)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~------~--------------~~~~~----~i~~~~~sp~g  270 (403)
                      +.+..++|.|.+.  ++++-+ .|...+.+.+...+...      +              .-|..    -...++|+|||
T Consensus       166 ~yvqgvawDpl~q--yv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG  242 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQ--YVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG  242 (434)
T ss_pred             cccceeecchhhh--hhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence            9999999988776  444422 45555555544322100      0              01111    23457899999


Q ss_pred             CEEEEEeC----CCc----EEEEEEcCCC-cEEEEEecCCCcccEEEEEeCC------------------CCCEEEEEeC
Q 015650          271 QLLATSST----KGT----LVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSS------------------NAQWLAVSSD  323 (403)
Q Consensus       271 ~~l~s~~~----dg~----~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~------------------d~~~l~s~~~  323 (403)
                      .+|++...    .+.    ..++|+-... ++...+..  -..+...+.|+|                  -+-.+|.++ 
T Consensus       243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-  319 (434)
T KOG1009|consen  243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-  319 (434)
T ss_pred             cEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEee-
Confidence            99987542    222    0355553322 22222222  123344444443                  223455555 


Q ss_pred             CCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       324 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      ...|+|||.++.++.                                  ...--+|-..++.++|++||.+|++.+.||
T Consensus       320 ~~svyvydtq~~~P~----------------------------------~~v~nihy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  320 KNSVYVYDTQTLEPL----------------------------------AVVDNIHYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             cceEEEeccccccce----------------------------------EEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence            447999999987751                                  111245556899999999999999999998

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=6.9e-17  Score=130.36  Aligned_cols=271  Identities=15%  Similarity=0.224  Sum_probs=191.9

Q ss_pred             CeEEEEEcC--C-CCEEEEEc-----CCcEEEEEcC--CCeeEEEEecccCcceeEEEEeeeCCeE-----EEeeCCCCC
Q 015650           87 TLLHISFNQ--D-HGCFAAGT-----DHGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNIL-----ALVGGGPDP  151 (403)
Q Consensus        87 ~i~~i~~s~--d-~~~l~~~~-----~~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~s~~~d~  151 (403)
                      .+.++.|+.  + +.+||.|+     .+.|.|-.++  +++.+....+  .|..+++.+.|.|+..     .|++.+   
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f--d~~YP~tK~~wiPd~~g~~pdlLATs~---  120 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF--DHPYPVTKLMWIPDSKGVYPDLLATSS---  120 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC--CCCCCccceEecCCccccCcchhhccc---
Confidence            577888873  3 45688887     2347776664  3343333444  4889999999988753     466665   


Q ss_pred             CCCCceEEEEECCCC--ce--eEEE------ecCCceeEEEEec-CceEEE---ecCeEEEEEcCCce---eeeEeeccC
Q 015650          152 QYPLNKVMIWDDHQS--RC--IGEL------SFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK---LLHQIETIA  214 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~--~~--~~~~------~~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~---~~~~~~~~~  214 (403)
                          ..+++|.+...  +.  ...+      ++..++++..|+. |-+++.   .|-+..|||++++.   ...++-.|.
T Consensus       121 ----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD  196 (364)
T KOG0290|consen  121 ----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD  196 (364)
T ss_pred             ----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence                47999998742  21  1111      1567899999987 445555   49999999999863   345567899


Q ss_pred             CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe---e-cCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcC
Q 015650          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---A-HDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~---~-~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      ..+..++|...+..+ +++.| .||.+++||++.....++.   . ...+...++|++ |-+++|+-..|...|.|.|++
T Consensus       197 KEV~DIaf~~~s~~~-FASvg-aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR  274 (364)
T KOG0290|consen  197 KEVYDIAFLKGSRDV-FASVG-ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR  274 (364)
T ss_pred             cceeEEEeccCccce-EEEec-CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence            999999999976665 45546 7999999999986654432   1 245678888887 567888877777669999998


Q ss_pred             C-CcEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccccee
Q 015650          290 D-GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (403)
Q Consensus       290 ~-~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (403)
                      . ...+..+++  |.+.|++|+|.|.. .+|+++++|..+.|||+.+.-.....++                  .+    
T Consensus       275 ~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP------------------il----  330 (364)
T KOG0290|consen  275 VPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP------------------IL----  330 (364)
T ss_pred             CCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc------------------hh----
Confidence            6 456677775  88999999999965 5899999999999999987653111110                  00    


Q ss_pred             eeeeeeEEEEEeCCCceEEEecc-CCCEEEEEcc
Q 015650          368 SSEWSVAQFRLVEGSPYIVAFGH-QKNTVVILGM  400 (403)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~fs~-d~~~l~~~~~  400 (403)
                             ..+ .++.|+.+.|++ .+..|+++..
T Consensus       331 -------ay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  331 -------AYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             -------hhh-ccceeeeeeecccCCCEEEEEec
Confidence                   012 356788899985 5677777654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=5.2e-18  Score=138.75  Aligned_cols=228  Identities=13%  Similarity=0.114  Sum_probs=168.6

Q ss_pred             CCCeEEEEEc-------CCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcc---eeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           85 PPTLLHISFN-------QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG---IGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        85 ~~~i~~i~~s-------~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      ...|...+|-       |+..++|+.+ +.-|++||.-+++.......- .|.   ....++.|++|+..|+.|..    
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGeqlfaGyk----  178 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGEQLFAGYK----  178 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCCeEeeccc----
Confidence            3456666664       5667777777 444999999887765332222 222   35678999999999999887    


Q ss_pred             CCceEEEEEC-CCCceeEEE---ec-----CCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEeeccCCCceeE
Q 015650          154 PLNKVMIWDD-HQSRCIGEL---SF-----RSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANPKGLC  220 (403)
Q Consensus       154 ~~~~i~iwd~-~~~~~~~~~---~~-----~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  220 (403)
                        ..|++||+ +.|+....+   .+     .+.|.+++|+|... .++   ...++-||.-..++++..+.+|.+.|+.+
T Consensus       179 --rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL  256 (406)
T KOG2919|consen  179 --RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL  256 (406)
T ss_pred             --ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence              69999998 555432222   12     56788999999654 555   35677777777788999999999999999


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCC--ceeEEeecCC-ceEEE--EEcCCCCEEEEEeCCCcEEEEEEcCC-CcEE
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDS-RIACF--ALTQDGQLLATSSTKGTLVRIFNTLD-GTLL  294 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~-~i~~~--~~sp~g~~l~s~~~dg~~i~iwd~~~-~~~~  294 (403)
                      +|.++++.++..+  ..+-.|..||++..  .+..+..|.. .-..|  ...|+|++|++|+.||. |++||+++ +..+
T Consensus       257 ~~~edGn~lfsGa--Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~gn~~  333 (406)
T KOG2919|consen  257 QWCEDGNKLFSGA--RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDLGNEV  333 (406)
T ss_pred             EeccCcCeecccc--cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCCCCcc
Confidence            9999999766543  67889999999983  3444555654 33334  44689999999999999 99999988 6655


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 015650          295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (403)
Q Consensus       295 ~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d  324 (403)
                      ..+..  +...++.++++|--.++++++..
T Consensus       334 sv~~~--~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  334 SVTGN--YSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccccc--ccccccceecCcccceeeeccCc
Confidence            55553  67889999999998888887654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=6.3e-19  Score=166.13  Aligned_cols=239  Identities=13%  Similarity=0.180  Sum_probs=166.5

Q ss_pred             EEEEcCCCC-EEEEEc-----C------CcEEEEEcCCCeeE----EEEecccCcceeEEEEeeeCCeEE----EeeCCC
Q 015650           90 HISFNQDHG-CFAAGT-----D------HGFRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILA----LVGGGP  149 (403)
Q Consensus        90 ~i~~s~d~~-~l~~~~-----~------~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~----~~s~~~  149 (403)
                      .++|+|++. ++|+|.     |      ..+-||.++-....    ....+.  ...+...++|.+.+..    +++|..
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeecccc
Confidence            468999986 566653     2      22556655322211    223332  4567788888776554    888888


Q ss_pred             CCCCCCceEEEEECCC---C---ceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEeec--cCCC
Q 015650          150 DPQYPLNKVMIWDDHQ---S---RCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIET--IANP  216 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~---~---~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~  216 (403)
                      |     |.|.+||...   +   ..+.++. |.+.|..+.|++... +++   .||.|.|||++..+.-.....  ....
T Consensus        89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e  163 (1049)
T KOG0307|consen   89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE  163 (1049)
T ss_pred             C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence            8     9999999765   2   2344555 999999999999765 666   489999999987544333321  2345


Q ss_pred             ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecC--CceEEEEEcCCC-CEEEEEeCCCc--EEEEEEcCC
Q 015650          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHD--SRIACFALTQDG-QLLATSSTKGT--LVRIFNTLD  290 (403)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~--~~i~~~~~sp~g-~~l~s~~~dg~--~i~iwd~~~  290 (403)
                      |.+++|+..-.+  +.++++.+|.+.|||++.++ +..+..+.  ..+..++|+|+. ..|++++.|..  +|.+||++.
T Consensus       164 I~~lsWNrkvqh--ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  164 IKCLSWNRKVSH--ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             ceEeccchhhhH--HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            666666665444  33346688999999999864 33333333  357899999976 45666665542  399999885


Q ss_pred             C-cEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCC
Q 015650          291 G-TLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       291 ~-~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      . ..+++++.  |...|.+|.|++.+ ++|++++.|+.|.+|+.++++.+-
T Consensus       242 assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  242 ASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             cCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence            4 45666654  78899999999966 789999999999999999998543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=5.8e-16  Score=138.27  Aligned_cols=237  Identities=11%  Similarity=0.052  Sum_probs=158.2

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC-CCCCCCceEEEE
Q 015650           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIW  161 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~i~iw  161 (403)
                      +....++++|++++|+++.  +++|.+|+++. +.........  .......+.+++++..++++.. +     +.|.+|
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~-----~~v~v~  107 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNA-----NCVSVS  107 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCC-----CeEEEE
Confidence            4567789999999987765  45599999973 2222223222  2224567889998876665543 4     899999


Q ss_pred             ECCCC-c---eeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeee-------EeeccCCCceeEEEeeCC
Q 015650          162 DDHQS-R---CIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH-------QIETIANPKGLCAVSQGV  226 (403)
Q Consensus       162 d~~~~-~---~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~  226 (403)
                      ++.+. .   .+..+.+......++++|++++++    .++.|.+||+.+...+.       .+.. ......+.|+|++
T Consensus       108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg  186 (330)
T PRK11028        108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ  186 (330)
T ss_pred             EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC
Confidence            98643 2   233333445577889999998775    37899999997633221       1111 2334678999999


Q ss_pred             CeEEEEeeCCccCeEEEEEccC--CceeE---Eeec------CCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCc--
Q 015650          227 GSLVLVCPGLQKGQVRVEHYAS--KRTKF---IMAH------DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT--  292 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~--~~~~~---~~~~------~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~--  292 (403)
                      +.++++.  ..++.|.+|+++.  +....   +..+      ......+.|+|+|++|+++.. ++. |.+|++....  
T Consensus       187 ~~lyv~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~  263 (330)
T PRK11028        187 QYAYCVN--ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSV  263 (330)
T ss_pred             CEEEEEe--cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCe
Confidence            8776664  3479999999973  23222   2211      122346889999999998865 566 9999986432  


Q ss_pred             --EEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCcEEEEEeecCC
Q 015650          293 --LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKVNS  336 (403)
Q Consensus       293 --~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~-dg~v~iwd~~~~~  336 (403)
                        .+..+..   ......+.|+|||++|+++.. +++|.+|+++...
T Consensus       264 ~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~  307 (330)
T PRK11028        264 LSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET  307 (330)
T ss_pred             EEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence              2233322   124567899999999998774 8999999997543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.2e-17  Score=134.43  Aligned_cols=265  Identities=15%  Similarity=0.173  Sum_probs=178.2

Q ss_pred             CEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-
Q 015650           98 GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-  173 (403)
Q Consensus        98 ~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-  173 (403)
                      ..+|++..++ |++||..+++.+  ..+. ++...+..+.|..  ....+.+++.|     |+|++||++....+..+. 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l--~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLL--EEFK-GPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISW  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhh--heec-CCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheec
Confidence            4566666555 999999886655  5565 5666666666654  45667777777     999999999887665555 


Q ss_pred             --cC-CceeEEEEecCceEEE-------ecCeEEEEEcCCcee-eeEe-eccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650          174 --FR-SEVRSVKLRRDRIIVV-------LEQKIFVYNFADLKL-LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (403)
Q Consensus       174 --~~-~~i~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (403)
                        ++ .+..+++.+-.+.+++       .+-.|.+||.+..+. +..+ +.|.+.|+.++|+|....+++  +|+.||.|
T Consensus       113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl--SGSvDGLv  190 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL--SGSVDGLV  190 (376)
T ss_pred             cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE--eecccceE
Confidence              33 4566777765555555       367899999998655 5444 679999999999998887654  37899999


Q ss_pred             EEEEccCCc----eeEEeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc----------ccE
Q 015650          242 RVEHYASKR----TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR----------AEI  306 (403)
Q Consensus       242 ~v~d~~~~~----~~~~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~----------~~v  306 (403)
                      .|||+....    +.....|...|.++.|..++ +.|.+-+..++ ..+|+++.+.+...+......          ..+
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            999998732    33445678889999999887 45777888888 999999988765554432000          111


Q ss_pred             EEEEeCCCCCEEEEEeC-CCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE-eCCCce
Q 015650          307 YSLAFSSNAQWLAVSSD-KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPY  384 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  384 (403)
                      -......++..++.++. -+...++-+..........                             ..+.+++ |.+-|.
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~-----------------------------~~a~l~g~~~eiVR  320 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLT-----------------------------EPAILQGGHEEIVR  320 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEeeecccccccC-----------------------------ccccccCCcHHHHH
Confidence            12222234455555544 6677777666433211110                             0122333 445667


Q ss_pred             EEEeccCCCEEEEEccCC
Q 015650          385 IVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       385 ~~~fs~d~~~l~~~~~dG  402 (403)
                      .+.|...+..+.+||+||
T Consensus       321 ~i~~~~~~~~l~TGGEDG  338 (376)
T KOG1188|consen  321 DILFDVKNDVLYTGGEDG  338 (376)
T ss_pred             HHhhhcccceeeccCCCc
Confidence            777877888888888887

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=3e-17  Score=146.51  Aligned_cols=249  Identities=16%  Similarity=0.200  Sum_probs=186.4

Q ss_pred             CCCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650           70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (403)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (403)
                      .++.+.....++.+|.+.|+|++|+.||+.+|+|+ |+.|.||.-.-. ..  ..+  .|...|.++.|+|-...+++++
T Consensus        38 yD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~--LkY--SH~D~IQCMsFNP~~h~LasCs  112 (1081)
T KOG1538|consen   38 YDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GI--LKY--SHNDAIQCMSFNPITHQLASCS  112 (1081)
T ss_pred             EeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ce--eee--ccCCeeeEeecCchHHHhhhcc
Confidence            34455556678999999999999999999999998 455999985422 22  233  4999999999999988888887


Q ss_pred             CCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEee---ccCCCceeEEE
Q 015650          149 PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE---TIANPKGLCAV  222 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~  222 (403)
                      -      ...-+|.... +.+...+....+.+++|..||.+++   .+|+|.+-+- +++..-.++   +...++..++|
T Consensus       113 L------sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~  184 (1081)
T KOG1538|consen  113 L------SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICW  184 (1081)
T ss_pred             h------hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEe
Confidence            6      4788998554 3344444567888999999999999   6999999874 454444443   35667889999


Q ss_pred             eeCCC---eEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          223 SQGVG---SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       223 ~~~~~---~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      +|...   .-+++.. ....++..|.+.++.+..-..-.-...|+.+-++|.++..|+.|+. +++|- +.|-.+.++-.
T Consensus       185 ~p~sg~G~~di~aV~-DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~  261 (1081)
T KOG1538|consen  185 NPSSGEGRNDILAVA-DWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE  261 (1081)
T ss_pred             cCCCCCCccceEEEE-eccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc
Confidence            98642   1122221 2445566666555444333334445678999999999999999999 99995 67777777764


Q ss_pred             CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       300 ~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                        ....|+.++..|++++++.|+.||+|.-|++-...
T Consensus       262 --~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  262 --QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             --cceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence              55799999999999999999999999999986544

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.77  E-value=3.3e-17  Score=134.34  Aligned_cols=237  Identities=15%  Similarity=0.211  Sum_probs=170.7

Q ss_pred             CCCCCeEEEEEcCC----CCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCCCCc
Q 015650           83 SPPPTLLHISFNQD----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLN  156 (403)
Q Consensus        83 ~~~~~i~~i~~s~d----~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~  156 (403)
                      .|.+....++|+-|    ..+||+|+..| |+|.|+..++..  ..+. +|...|..+.+.|+. .++++++.|     .
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--~~~~-ghG~sINeik~~p~~~qlvls~SkD-----~  158 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--KNYR-GHGGSINEIKFHPDRPQLVLSASKD-----H  158 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--ccee-ccCccchhhhcCCCCCcEEEEecCC-----c
Confidence            47777888888754    35778777666 999998876654  6665 899999999999864 678888888     9


Q ss_pred             eEEEEECCCCceeEEEe----cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe-------------------
Q 015650          157 KVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-------------------  210 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-------------------  210 (403)
                      .|++|++++..++..+.    |...|.++.|+.++.+++   .|.+|++|++...+....+                   
T Consensus       159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~  238 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK  238 (385)
T ss_pred             eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence            99999999999999886    899999999999999999   5899999999843211111                   


Q ss_pred             ---------eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-C-c-------------eeEEeecCCceEEE--
Q 015650          211 ---------ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-K-R-------------TKFIMAHDSRIACF--  264 (403)
Q Consensus       211 ---------~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~-~-------------~~~~~~~~~~i~~~--  264 (403)
                               ..|...+.++.|-  ++  ++++-+ -++.|..|.... + .             ...+.-....|.-+  
T Consensus       239 ~~fp~fst~diHrnyVDCvrw~--gd--~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf  313 (385)
T KOG1034|consen  239 THFPDFSTTDIHRNYVDCVRWF--GD--FILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF  313 (385)
T ss_pred             cccccccccccccchHHHHHHH--hh--heeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence                     1122222222221  22  333323 456899998722 1 0             11222233345544  


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEEcCCCcEE--EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       265 ~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      +|+|-++.||.|...|. |.+||++..++.  .++........|...+|+.||..|+..++|++|.-||.-
T Consensus       314 ~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  314 AFDPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eecHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            56677899999999999 999999876652  233322234689999999999999999999999999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=1.1e-17  Score=146.56  Aligned_cols=251  Identities=14%  Similarity=0.174  Sum_probs=182.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC------CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (403)
                      .++..|.+.|+.++|.+....|++++.++ +.+|++..      .......+|. +|..+|.+++...++..+++++.| 
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~D-  365 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGID-  365 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccC-
Confidence            36778999999999999999999999555 99999921      1223335676 899999999999999999999999 


Q ss_pred             CCCCceEEEEECCCC----------ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCc
Q 015650          152 QYPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK  217 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~  217 (403)
                          |+|+.|++...          .....+. |.+.|+.++++.....++   +||+++.|+...... .++.......
T Consensus       366 ----g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g  440 (577)
T KOG0642|consen  366 ----GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG  440 (577)
T ss_pred             ----ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence                99999965421          1233444 899999999998665555   599999999766554 3343333333


Q ss_pred             eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEe-------ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~-------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      .-+.+...........+....+.-.++++.... ...+.       .....+.-+.++|.+.+.+++..|+. |+++|..
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~  519 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNK  519 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccccc
Confidence            333343333222222211122333333443322 22221       12245778889999999999999999 9999999


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      +++.+.....  |...++++++.|+|-+|++++.|+.+++|.+.......
T Consensus       520 ~~~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  520 TGKILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             ccccchheee--ccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            9999988885  77899999999999999999999999999998877533

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.2e-17  Score=139.86  Aligned_cols=197  Identities=22%  Similarity=0.277  Sum_probs=155.9

Q ss_pred             EEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeE
Q 015650          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQ  209 (403)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~  209 (403)
                      ..++|+.++..+++++.|     |.+|||++.+...+.... |...|.++.|+||+++++  .....+||+.+++..+..
T Consensus       148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence            578889999999999999     999999987777666655 999999999999999998  233999999999976665


Q ss_pred             eecc--CCCceeEEEeeCC--CeEEEEeeCCccCeEEEEEccCC------ceeEEeecCCceEEEEEcCCCCEEEEEeCC
Q 015650          210 IETI--ANPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYASK------RTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (403)
Q Consensus       210 ~~~~--~~~~~~~~~~~~~--~~~~~~~~g~~d~~i~v~d~~~~------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d  279 (403)
                      ....  ......|.|+.++  +.+++++.-..-+.|+.||+...      +..........|++++.+++|++++.|+.|
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            5421  2234557777665  34555554445567777776541      222222344579999999999999999999


Q ss_pred             CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      |. |-|++..+.++++.++. .|...|+.+.|+||.+++++.+.|....+..+.-.+
T Consensus       303 Gs-Vai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  303 GS-VAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             Cc-EEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence            99 99999999999887775 488999999999999999999999999999988754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=3.8e-17  Score=139.08  Aligned_cols=204  Identities=18%  Similarity=0.278  Sum_probs=162.6

Q ss_pred             ccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCc
Q 015650           80 TSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN  156 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~  156 (403)
                      .-.+|++.|.+++|+..- .+||+|+ |.+|++||++++++.  ..+. +|...|.++.|++. ...+++|+.|     +
T Consensus       238 ~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~--~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D-----~  309 (463)
T KOG0270|consen  238 SASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK--SSIT-HHGKKVQTLEWHPYEPSVLLSGSYD-----G  309 (463)
T ss_pred             ccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc--eehh-hcCCceeEEEecCCCceEEEecccc-----c
Confidence            345799999999998875 5678887 777999999999877  6676 78999999999874 6789999999     9


Q ss_pred             eEEEEECCC-CceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          157 KVMIWDDHQ-SRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       157 ~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      +|.+.|.+. +..-..++..+.|..++|.+.....+    -||+|+-+|+|. ++++.+++.|...|..++++....+++
T Consensus       310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  310 TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             eEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcce
Confidence            999999984 34445566889999999998654433    389999999997 589999999999999999998877654


Q ss_pred             EEeeCCccCeEEEEEccCCceeEEeecC---CceEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCcEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLL  294 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~---~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~  294 (403)
                       ++ ++.++.|++|++..........|.   +...|.++.|+-. .|+.|+..+. ++|||+.+...+
T Consensus       390 -~t-~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V  454 (463)
T KOG0270|consen  390 -ST-ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPV  454 (463)
T ss_pred             -ee-ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce-EEEeecccChhH
Confidence             33 568999999999875554444443   3466778888654 5677888887 999999776544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.75  E-value=1.4e-16  Score=128.62  Aligned_cols=237  Identities=10%  Similarity=0.134  Sum_probs=165.9

Q ss_pred             CCCCCCeEEEEEcCCCC-----EEEEEcCCcEEEEEcCCCee--EEEEecc----cCcceeEEEEeeeC-CeEEEeeCCC
Q 015650           82 SSPPPTLLHISFNQDHG-----CFAAGTDHGFRIYNCDPFRE--IFRRDFE----RGGGIGVVEMLFRC-NILALVGGGP  149 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~-----~l~~~~~~~i~iw~~~~~~~--~~~~~~~----~~~~~~v~~~~~~~-~~~~~~s~~~  149 (403)
                      ..|.=+++.+.|.|+..     +||+ +++.+|+|.+...+.  .....+.    ..+..+++++.|+. +-.++.+++-
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            46888999999999863     3444 466699999874322  1111111    24556888888875 5567778888


Q ss_pred             CCCCCCceEEEEECCCCce---eEE-EecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccC---CCce
Q 015650          150 DPQYPLNKVMIWDDHQSRC---IGE-LSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIA---NPKG  218 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~---~~~-~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~---~~~~  218 (403)
                      |     .+..|||++++..   ... +.|..+|..++|..++.-++    .||.+++||++..+--..+....   .+..
T Consensus       172 D-----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl  246 (364)
T KOG0290|consen  172 D-----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL  246 (364)
T ss_pred             c-----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence            8     9999999999733   223 34999999999999776555    59999999999865444433222   2333


Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCc---
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT---  292 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~---  292 (403)
                      -+++++...+ ++|+-......|.+.|++.  ..+..+..|.+.|+.++|.|. ...|++++.|.. +-+||+...-   
T Consensus       247 RLswnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~  324 (364)
T KOG0290|consen  247 RLSWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPREN  324 (364)
T ss_pred             eeccCcCCch-HHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccC
Confidence            4455444333 4555455678899999998  456778999999999999995 568899999998 9999997532   


Q ss_pred             ---EEEEEecCCCcccEEEEEeCC-CCCEEEEEeCCCcEEEE
Q 015650          293 ---LLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVF  330 (403)
Q Consensus       293 ---~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~~dg~v~iw  330 (403)
                         ++..+.   -.+.|+.+.|++ .+.+|+.+. ++.+.|.
T Consensus       325 ~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL  362 (364)
T KOG0290|consen  325 GEDPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEIL  362 (364)
T ss_pred             CCCchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence               222233   346899999996 556777765 4455554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=6.8e-15  Score=135.19  Aligned_cols=177  Identities=14%  Similarity=0.089  Sum_probs=125.3

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      ..|.+||...........+...+...+|+|||..++.      +..|++||+.+++... +...........|+|+++.+
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence            4799999776554444447778999999999988772      3479999998875433 22233445568999999987


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      +++.....+..|++||+.++....+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+..  ......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~~  334 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQ  334 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCcc
Confidence            76643223346999999988877777666678899999999999877764 33 1555577666553 3332  223456


Q ss_pred             EEEeCCCCCEEEEEeCC---CcEEEEEeecCC
Q 015650          308 SLAFSSNAQWLAVSSDK---GTVHVFNLKVNS  336 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~d---g~v~iwd~~~~~  336 (403)
                      ...|+|||++|+..+.+   ..|++||+++++
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            78999999999876543   358888887775

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=1.1e-17  Score=143.22  Aligned_cols=227  Identities=16%  Similarity=0.175  Sum_probs=185.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      .-.-..+.|+.+|+.|+.|+..| |..+|+.+++..++..    -...|.++.|-.+..+++.+..      ..++||| 
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVAQK------~y~yvYD-  197 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQFFAVAQK------KYVYVYD-  197 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchHHHHhhhh------ceEEEec-
Confidence            34567889999999999998777 9999999887765433    4467888888777777777765      6899999 


Q ss_pred             CCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      ..|..+..++-...|..+.|-|-..+++   ..|.++.-|+.+|+.+..+....+.+..++-+|.+.   +...|..+|+
T Consensus       198 ~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---Vih~GhsnGt  274 (545)
T KOG1272|consen  198 NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---VIHLGHSNGT  274 (545)
T ss_pred             CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---eEEEcCCCce
Confidence            7888888888778899999999988888   367899999999999999988888888888888764   4445778999


Q ss_pred             EEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 015650          241 VRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA  319 (403)
Q Consensus       241 i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~  319 (403)
                      |.+|....+. +..+..|.++|.+|++.++|+|++|.+.|.. |+|||+++...+.++..   ..+...++||..| .| 
T Consensus       275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lL-  348 (545)
T KOG1272|consen  275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LL-  348 (545)
T ss_pred             EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-ce-
Confidence            9999988754 4567789999999999999999999999999 99999999887777764   3456778887654 34 


Q ss_pred             EEeCCCcEEEEE
Q 015650          320 VSSDKGTVHVFN  331 (403)
Q Consensus       320 s~~~dg~v~iwd  331 (403)
                      +.+....|.||.
T Consensus       349 A~~~G~~v~iw~  360 (545)
T KOG1272|consen  349 ALSYGDHVQIWK  360 (545)
T ss_pred             eeecCCeeeeeh
Confidence            444555799995

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=2.3e-15  Score=138.68  Aligned_cols=170  Identities=15%  Similarity=0.113  Sum_probs=119.7

Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      ..|++||..... .+.+. +...+..+.|+|||..++.      +..|++||+.+++... +..........+|+|+++.
T Consensus       184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCE
Confidence            689999976555 44444 7778999999999988872      2379999998875422 2222233456899999987


Q ss_pred             EEEEeeCCccCeE--EEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCC-CcEEEEEecCCCcc
Q 015650          229 LVLVCPGLQKGQV--RVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLD-GTLLQEVRRGADRA  304 (403)
Q Consensus       229 ~~~~~~g~~d~~i--~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~-~~~~~~~~~~~~~~  304 (403)
                      ++++.  ..+|.+  .+||+.++....+..+...+....|+|||+.|+..+ .++. .+||++.. +.....+ .  +..
T Consensus       262 La~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~~~  335 (429)
T PRK01742        262 LAFAS--SKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--GRG  335 (429)
T ss_pred             EEEEE--ecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--CCC
Confidence            66654  345654  455777777777777777888999999999887655 4677 88887643 2222233 2  222


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                        ..+.|+|||++|+..+.++ +.+||+.+++
T Consensus       336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~  364 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDN-VVKQDLTSGS  364 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCC-EEEEECCCCC
Confidence              4578999999998887765 6669998876

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.3e-15  Score=137.66  Aligned_cols=286  Identities=14%  Similarity=0.184  Sum_probs=197.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC--CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      .+...|.-.++|.+++|+++++|+|..+| |.+|.--.  ........+. =|...|.++.|+.+|.++.+|+..     
T Consensus       199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-WH~~~V~~L~fS~~G~~LlSGG~E-----  272 (792)
T KOG1963|consen  199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-WHHDEVNSLSFSSDGAYLLSGGRE-----  272 (792)
T ss_pred             hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE-ecccccceeEEecCCceEeecccc-----
Confidence            44566777799999999999999998555 99997432  2222223333 578899999999999999999999     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc-----------CCCceeE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI-----------ANPKGLC  220 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-----------~~~~~~~  220 (403)
                      +.+.+|.+.+++ .+-+. -..+|..+.++||+.+.+   .|+.|.+....+.+....+.+.           ..-...+
T Consensus       273 ~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~  351 (792)
T KOG1963|consen  273 GVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV  351 (792)
T ss_pred             eEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence            999999999998 33333 789999999999988766   6999999988766554444322           2223457


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEe-----------ecCCceEEEEEcCCCCEEEEEeC--------CC
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM-----------AHDSRIACFALTQDGQLLATSST--------KG  280 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~-----------~~~~~i~~~~~sp~g~~l~s~~~--------dg  280 (403)
                      +++|..+...+  .| ..|.|.+||+-+.. +..+.           .+.-.++.++.+..|.+++|.-.        ||
T Consensus       352 ~idpr~~~~vl--n~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~  428 (792)
T KOG1963|consen  352 SIDPRTNSLVL--NG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG  428 (792)
T ss_pred             EEcCCCCceee--cC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence            77775443333  23 78999999987733 22211           12235777888888999998643        32


Q ss_pred             c-EEEEEEcCCC----cEEEEEecCCCcccEEEEEeC-CCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcc
Q 015650          281 T-LVRIFNTLDG----TLLQEVRRGADRAEIYSLAFS-SNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (403)
Q Consensus       281 ~-~i~iwd~~~~----~~~~~~~~~~~~~~v~~l~~s-~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (403)
                      . .+++|-....    .+...+..+ |...+...++. +... ..++++.||.++||-+...++..+..           
T Consensus       429 e~~LKFW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~-----------  496 (792)
T KOG1963|consen  429 EVSLKFWQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS-----------  496 (792)
T ss_pred             eEEEEEEEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc-----------
Confidence            1 2788965432    333344433 66555554444 3333 78999999999999998877643332           


Q ss_pred             cccccccccccceeeeeeeeEEE-EEeCCCceEEEeccCCCEEEEEccC
Q 015650          354 SSLSFIKGVLPKYFSSEWSVAQF-RLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                                     ..|....+ ..+..+++.++|+.||..|+++.+|
T Consensus       497 ---------------s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~  530 (792)
T KOG1963|consen  497 ---------------SNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD  530 (792)
T ss_pred             ---------------cceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence                           44543322 2456789999999999887777654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=9.5e-16  Score=128.83  Aligned_cols=202  Identities=13%  Similarity=0.159  Sum_probs=155.3

Q ss_pred             cCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCC-------ceeEEEe-cCCceeEEEEecCceEEE----e
Q 015650          126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVV----L  192 (403)
Q Consensus       126 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~-------~~~~~~~-~~~~i~~~~~~~~~~~~~----~  192 (403)
                      .+|...+..+.|+| +...+++++.|     .+|.||.+..+       +++..+. |...|--++|+|....+.    .
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD-----~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSED-----TKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             cCccccccccccCccCCceeecCCCC-----ceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            48999999999998 56789999999     99999998654       4566666 899999999999654333    5


Q ss_pred             cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE-eecCCc-eEEEEEcCCC
Q 015650          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MAHDSR-IACFALTQDG  270 (403)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~-i~~~~~sp~g  270 (403)
                      |++|.+||+.+|+.+.++. |.+.+..+.|+.+|..+  ++ .+.|..|+|||.+++.+..- .+|.+. -..+.|-.+|
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l--~T-tckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g  228 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL--CT-TCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG  228 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee--ee-ecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence            9999999999999988887 89999999999998854  33 34999999999999776543 467653 3455677888


Q ss_pred             CEEEEEeC---CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCC
Q 015650          271 QLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSG  337 (403)
Q Consensus       271 ~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~  337 (403)
                      .++-+|-.   +.. +-+||..+.+....+..-...+.|.---|.+|..+|..++ .|+.|+-|.+....+
T Consensus       229 ~i~tTGfsr~seRq-~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQ-IALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             ceeeeccccccccc-eeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            85555532   556 9999977654322222211446788888999999886555 899999999988764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=9.4e-16  Score=141.48  Aligned_cols=177  Identities=14%  Similarity=0.081  Sum_probs=125.4

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      ..|.+||...........+...+....|+||+..++.      +..|++||+.+++... +...........|+|+++.+
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            4799999754444333347778999999999987772      2469999998876533 33333444578999999987


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC-CCc-EEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~-~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      ++......+..|++||+.++....+..+.......+|+|||++|+..+. +|. .|+++|+.+++..+...   +.....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~---~g~~~~  339 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF---QGNYNA  339 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec---CCCCcc
Confidence            7665333345799999999888777777666678999999999987764 332 16667777766543322   223445


Q ss_pred             EEEeCCCCCEEEEEeCCC---cEEEEEeecCC
Q 015650          308 SLAFSSNAQWLAVSSDKG---TVHVFNLKVNS  336 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg---~v~iwd~~~~~  336 (403)
                      .++|+|||++|+..+.++   .|++||+.+++
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            789999999998765433   58999998766

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=6.2e-15  Score=136.25  Aligned_cols=175  Identities=10%  Similarity=0.099  Sum_probs=126.8

Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      ..|.++|..... .+.+. +...+....|+|||..++.      +..|++||+.+++.. .+......+....|+|+++.
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            589999975444 44454 7789999999999987772      358999999887653 34444556678899999998


Q ss_pred             EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-C--cEEEEEEcCCCcEEEEEecCCCccc
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      +++.........|++||+.++....+..+........|+|||+.|+..+.. |  . |++||+..++... +..  +...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~~-lt~--~~~~  335 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPRR-ISF--GGGR  335 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeEE-eec--CCCc
Confidence            766653223345888899888888777777777889999999999877643 2  5 8888987665543 332  2345


Q ss_pred             EEEEEeCCCCCEEEEEeCC---CcEEEEEeecCC
Q 015650          306 IYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNS  336 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~d---g~v~iwd~~~~~  336 (403)
                      +....|+|||++|+....+   ..|.+||+..+.
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            6778999999999877643   357777775443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=1.1e-15  Score=128.48  Aligned_cols=224  Identities=13%  Similarity=0.136  Sum_probs=162.9

Q ss_pred             CccccCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEcCCCeeE-----EEEecccCcceeEEEEeeeCC-eEEEeeCC
Q 015650           77 AESTSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREI-----FRRDFERGGGIGVVEMLFRCN-ILALVGGG  148 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~-~~l~~~~~~~-i~iw~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~  148 (403)
                      +.....+|.+.|..++|+|.. ..||+|+++. |.||.+......     ....|. +|...|--+.|+|. ...|++++
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhcc
Confidence            446789999999999999954 6678888666 999998543221     124555 89999999999885 45677777


Q ss_pred             CCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCce-eEEEee
Q 015650          149 PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKG-LCAVSQ  224 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~  224 (403)
                      .|     ++|.+||+.+|+.+.++.|...|.++.|+.||.+++   -|..|+|||.++++.+.+-..|.+.-. -..|-.
T Consensus       152 ~D-----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  152 SD-----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA  226 (472)
T ss_pred             CC-----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence            77     999999999999999999999999999999999999   399999999999999888766665432 233444


Q ss_pred             CCCeEEEEeeC---CccCeEEEEEccCCc----eeEEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcE---
Q 015650          225 GVGSLVLVCPG---LQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL---  293 (403)
Q Consensus       225 ~~~~~~~~~~g---~~d~~i~v~d~~~~~----~~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~---  293 (403)
                      +++   ++++|   ..+.++-+||..+-.    ...+. ....|.---|++|.++++.++ .|+. |+-|.+.+..+   
T Consensus       227 ~g~---i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~h  301 (472)
T KOG0303|consen  227 SGK---IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVH  301 (472)
T ss_pred             cCc---eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeE
Confidence            444   33333   457889999987622    12222 344566666889988887655 5888 99999876553   


Q ss_pred             -EEEEecCCCcccEEEEEeCCC
Q 015650          294 -LQEVRRGADRAEIYSLAFSSN  314 (403)
Q Consensus       294 -~~~~~~~~~~~~v~~l~~s~d  314 (403)
                       +.+|.   ...+-..+.|-|.
T Consensus       302 yln~f~---S~epQRG~g~mPK  320 (472)
T KOG0303|consen  302 YLNTFS---SKEPQRGMGFMPK  320 (472)
T ss_pred             Eecccc---cCCcccccccccc
Confidence             22332   2234455666553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=8.2e-16  Score=141.58  Aligned_cols=210  Identities=14%  Similarity=0.071  Sum_probs=144.7

Q ss_pred             cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecC
Q 015650          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (403)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~  186 (403)
                      .|.+||.+....   +.+. .+...+....|+|++..++..+.+.  ....|++||+.+++.............++|+||
T Consensus       185 ~i~i~d~dg~~~---~~lt-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD  258 (429)
T PRK01742        185 EVRVADYDGFNQ---FIVN-RSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD  258 (429)
T ss_pred             EEEEECCCCCCc---eEec-cCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence            388888865543   2333 4666789999999988776654320  015799999988865433323444567899999


Q ss_pred             ceEEE--e--cCe--EEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecC
Q 015650          187 RIIVV--L--EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHD  258 (403)
Q Consensus       187 ~~~~~--~--d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~  258 (403)
                      |..++  .  ++.  |++||+.+++. ..+..+...+....|+|+++.+++++  ..++...||+++.  +....+ .+.
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~~~~~~~l-~~~  334 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSASGGGASLV-GGR  334 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEe-cCC
Confidence            98776  2  554  55667766553 44555555677899999998766554  3567778887653  333333 343


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      .  .+..|+|||++|+..+.++  +.+||+.+++.......    .....+.|+|||++|+.++.++.+.+|++..
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSST----FLDESPSISPNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            3  4678999999998887765  67799998876533221    1235678999999999999999999998764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=6.8e-16  Score=144.55  Aligned_cols=276  Identities=16%  Similarity=0.194  Sum_probs=180.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecc--cCcceeEEEEeeeC--CeEEEeeCCCCCCCCCceEEEE
Q 015650           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      .-..+.|+|-...+++++++. |+|||.+.++..  ..|.  ......|..+.+-.  |.-.+.+++.|     |.|+||
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----GvIRIw 1138 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----GVIRIW 1138 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeeccC-----ceEEEe
Confidence            355678899889999998666 999999877654  3343  12345677777643  45567777777     999999


Q ss_pred             ECC-C----CceeEEEe-c-------CCceeEEEEecC-ceEEEec--CeEEEEEcCCceeeeEeeccC-CCceeEEEee
Q 015650          162 DDH-Q----SRCIGELS-F-------RSEVRSVKLRRD-RIIVVLE--QKIFVYNFADLKLLHQIETIA-NPKGLCAVSQ  224 (403)
Q Consensus       162 d~~-~----~~~~~~~~-~-------~~~i~~~~~~~~-~~~~~~d--~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~  224 (403)
                      +-. +    .+++.... .       .+.-.-+.|... |.++++.  ..|+|||.....++..+.... ..++.+.-+-
T Consensus      1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred             cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc
Confidence            732 2    23333222 0       111123455554 4444432  479999998877777765432 2233333222


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccCC----ceeEEeecCCc--eEEEEEcCCCCE-EEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSR--IACFALTQDGQL-LATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~~--i~~~~~sp~g~~-l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      ...+ +++ +|..||.|++||.+..    .+.....|...  |..+.+.+.|-. |++|+.+|. |++||++.......+
T Consensus      1219 ~~gn-~i~-AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1219 VHGN-IIA-AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFL 1295 (1387)
T ss_pred             cCCc-eEE-EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccc
Confidence            2322 333 4779999999999873    34566788877  999999987654 999999999 999999874322222


Q ss_pred             ecCCC---cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650          298 RRGAD---RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (403)
Q Consensus       298 ~~~~~---~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (403)
                      ..-.|   .+.++++..+++...+|+|+. +.|+||++.-.+......            .-.|                
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~------------n~~F---------------- 1346 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKY------------NPGF---------------- 1346 (1387)
T ss_pred             eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccccc------------Cccc----------------
Confidence            21112   135999999999999999998 999999998665311000            0000                


Q ss_pred             EEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          375 QFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       375 ~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                       .....+++.+++|+|.--.||+|+.|.
T Consensus      1347 -~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1347 -MGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred             -ccCcCCCcceeeecchhHhhhhccCCc
Confidence             011135678999999988888887775

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=8.1e-16  Score=141.00  Aligned_cols=251  Identities=14%  Similarity=0.109  Sum_probs=175.5

Q ss_pred             cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCce--eEEE-----ecCCce
Q 015650          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRC--IGEL-----SFRSEV  178 (403)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~--~~~~-----~~~~~i  178 (403)
                      .+.||++... ......+.  ....+.++.|++. ...+++|..+     |+|.+||+..+..  ...+     .|..++
T Consensus       223 ~~~vW~~~~p-~~Pe~~~~--~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  223 VLLVWSLKNP-NTPELVLE--SPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             eEEEEecCCC-CCceEEEe--cCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            3789998765 22234453  6678999999884 5567777777     9999999987754  2222     288999


Q ss_pred             eEEEEecCce---EEE--ecCeEEEEEcCCcee-ee-----Eee------ccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650          179 RSVKLRRDRI---IVV--LEQKIFVYNFADLKL-LH-----QIE------TIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (403)
Q Consensus       179 ~~~~~~~~~~---~~~--~d~~i~i~d~~~~~~-~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (403)
                      ..+.|..+..   ++.  .||.|..|+++.... ..     ...      .....+..+.|.+.....+++  |++.|.|
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV--GTe~G~v  372 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV--GTEEGKV  372 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE--EcCCcEE
Confidence            9999976432   222  699999999875322 11     111      112345678888876666665  4688988


Q ss_pred             EEEEccC---Cc------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCCcccEEEEEe
Q 015650          242 RVEHYAS---KR------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAF  311 (403)
Q Consensus       242 ~v~d~~~---~~------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~  311 (403)
                      ..-....   ..      ......|.+.|+++.++|=+..++..+.|.+ |+||... ...++..+..  +...|++++|
T Consensus       373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaW  449 (555)
T KOG1587|consen  373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAW  449 (555)
T ss_pred             EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEE
Confidence            7733222   22      2345678899999999997765555555888 9999987 6667666664  4567999999


Q ss_pred             CCCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650          312 SSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (403)
Q Consensus       312 s~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~  390 (403)
                      ||... .|+++..||.|.|||+......+..                                 ..+......+.+.|++
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~---------------------------------s~~~~~~~l~~~~~s~  496 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVL---------------------------------SQKVCSPALTRVRWSP  496 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhccccCCcc---------------------------------cccccccccceeecCC
Confidence            99765 6778888999999999887753322                                 1222244566788999


Q ss_pred             CCCEEEEEccCCC
Q 015650          391 QKNTVVILGMDGR  403 (403)
Q Consensus       391 d~~~l~~~~~dG~  403 (403)
                      .|+.|++|...|+
T Consensus       497 ~g~~lavGd~~G~  509 (555)
T KOG1587|consen  497 NGKLLAVGDANGT  509 (555)
T ss_pred             CCcEEEEecCCCc
Confidence            9999999999884

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=2.3e-17  Score=150.59  Aligned_cols=248  Identities=12%  Similarity=0.189  Sum_probs=186.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      +-+.+|.++|+|+.|...|.++++|+|+. ++||..++..+.  ..+. +|...++.++.+.+...+++++.|     ..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--As~r-Ghs~ditdlavs~~n~~iaaaS~D-----~v  255 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--ASCR-GHSGDITDLAVSSNNTMIAAASND-----KV  255 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--ccCC-CCccccchhccchhhhhhhhcccC-----ce
Confidence            55889999999999999999999999777 999998777655  7787 899999999999999999999999     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEEecCeEEEEEcCCc--------------eeeeEeeccCC-------
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADL--------------KLLHQIETIAN-------  215 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~-------  215 (403)
                      |++|.+..+.++..+. |.+.|++++|+|-. --..||++++||.+-.              .++..+.....       
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg  334 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG  334 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence            9999999999999998 99999999999955 1115899999998710              00000000000       


Q ss_pred             ------Cce-eEEEeeCCCeEEEEee----------CCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCC-CEEEEE
Q 015650          216 ------PKG-LCAVSQGVGSLVLVCP----------GLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG-QLLATS  276 (403)
Q Consensus       216 ------~~~-~~~~~~~~~~~~~~~~----------g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g-~~l~s~  276 (403)
                            ... ..........+.+++.          ...+-.+++|++-++. ...+.+|...+..+.++|-. +...++
T Consensus       335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence                  000 0000011111222211          1245567788877754 45567899999999999954 455689


Q ss_pred             eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       277 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      +.||. ..|||+..|.+++....+ | ..+..-+||+||+.++....-|.++|.....++..
T Consensus       415 g~dgs-t~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  415 GYDGS-TIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             cCCCc-eEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence            99999 999999999888877754 4 57778899999999999888899999887766654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=7e-15  Score=135.09  Aligned_cols=213  Identities=11%  Similarity=0.058  Sum_probs=144.2

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  187 (403)
                      |.+||.+.....   .+. .+...+....|+|++..++......  ....|++|++.+++..........+..+.|+|||
T Consensus       181 l~~~d~dg~~~~---~lt-~~~~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        181 LRVSDYDGYNQF---VVH-RSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             EEEEcCCCCCCE---Eee-cCCCceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence            778887655432   222 2556788999999987766432110  0157999999888654443455556678999999


Q ss_pred             eEEEe----cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC--eEEEEEccCCceeEEeecCC
Q 015650          188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS  259 (403)
Q Consensus       188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~  259 (403)
                      ..++.    ++  .|++||+.+++..+. ......+....|+|+++.+++++  ..++  .|.++|+.++....+..+..
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s--~~~g~~~Iy~~d~~~g~~~~lt~~~~  331 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTS--DQAGRPQVYKVNINGGAPQRITWEGS  331 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEe--CCCCCceEEEEECCCCCeEEeecCCC
Confidence            87772    33  699999988765443 33344567789999998776654  2333  45555777776666655555


Q ss_pred             ceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCc---EEEEEee
Q 015650          260 RIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT---VHVFNLK  333 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~---v~iwd~~  333 (403)
                      ......|+|||++|+..+.+   .. |.+||+.+++.. .+...   .......|+|||++|+.++.++.   +++++++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            66788999999999876543   24 888999888754 34321   22346789999999999887765   5666664


Q ss_pred             c
Q 015650          334 V  334 (403)
Q Consensus       334 ~  334 (403)
                      .
T Consensus       407 G  407 (429)
T PRK03629        407 G  407 (429)
T ss_pred             C
Confidence            3

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=6.9e-16  Score=134.58  Aligned_cols=243  Identities=15%  Similarity=0.203  Sum_probs=153.5

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEE----EEecccCcceeEEEE---eeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF----RRDFERGGGIGVVEM---LFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~----~~~~~~~~~~~v~~~---~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      +....++-.|.+|+..-.+.+.+|+........    .+.+. +..-...++   .-.+.+.-+..+-..     |.|.+
T Consensus       126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~t-----Gqvq~  199 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTT-----GQVQL  199 (636)
T ss_pred             eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhccc-CCCCceecccccccCCCCcceEEeecc-----CceEE
Confidence            444555556788887766678888876422211    11121 111111111   112233333333333     78888


Q ss_pred             EECCCCceeEEEe-----cCCceeEEEEec--CceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          161 WDDHQSRCIGELS-----FRSEVRSVKLRR--DRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       161 wd~~~~~~~~~~~-----~~~~i~~~~~~~--~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      .|....+..+.+.     .+..++++.|-|  ++.+++  .+|.+++||..-.      .....  ......++++.+.+
T Consensus       200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~t~--p~~~~~k~~~~f~i  271 (636)
T KOG2394|consen  200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGATA--PSYQALKDGDQFAI  271 (636)
T ss_pred             ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccCCC--CcccccCCCCeeEE
Confidence            8866543322222     357899999988  455666  6999999996210      00001  11112233333222


Q ss_pred             EeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEe
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (403)
                      .. + ..      ......+..+..-.+.|...+|+|||++||+.+.||. +||||..+.+++..++.  .-+...|++|
T Consensus       272 ~t-~-ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcW  340 (636)
T KOG2394|consen  272 LT-S-KS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCW  340 (636)
T ss_pred             ee-e-ec------cccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEE
Confidence            21 0 00      0111333344444568999999999999999999999 99999988887766664  3478999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (403)
Q Consensus       312 s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~  390 (403)
                      ||||+||++|++|..|.||.+...+.                                   +++-++|...|+.|+|.|
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~erRV-----------------------------------VARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEERRV-----------------------------------VARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cCCccEEEecCCcceEEEEEeccceE-----------------------------------EEeccccccceeeEeecc
Confidence            99999999999999999999998873                                   667788888899999975

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=9.1e-14  Score=116.20  Aligned_cols=232  Identities=14%  Similarity=0.181  Sum_probs=168.8

Q ss_pred             CeEEEEEcCCCCEEEEEc-CCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           87 TLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~-~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      .|--+-|+.  .++|..+ ++.  +++++......++...+.    ..|.++.++.+.+.++--        ..|+|||+
T Consensus        48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp----t~IL~VrmNr~RLvV~Le--------e~IyIydI  113 (391)
T KOG2110|consen   48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFP----TSILAVRMNRKRLVVCLE--------ESIYIYDI  113 (391)
T ss_pred             EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecC----CceEEEEEccceEEEEEc--------ccEEEEec
Confidence            355555654  4665554 444  999998887777766664    678888887776665554        56999999


Q ss_pred             CCCceeEEEe----cCCceeEEEEecCceEEE-----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650          164 HQSRCIGELS----FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       164 ~~~~~~~~~~----~~~~i~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      ++.+++.++.    +...+.++.+++.+.+++     ..|.|.+||..+.+.+..+..|.+.+.+++|+++|.  ++|++
T Consensus       114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~--llATA  191 (391)
T KOG2110|consen  114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT--LLATA  191 (391)
T ss_pred             ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC--EEEEe
Confidence            9999999887    344567777777778888     368999999999999999999999999999999987  56665


Q ss_pred             CCccCeEEEEEccCCc-eeEEeec--CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc-------------------
Q 015650          235 GLQKGQVRVEHYASKR-TKFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-------------------  292 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~-~~~~~~~--~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~-------------------  292 (403)
                      ......|||+.+..+. +..+...  ...|.+++|+|++.+|++.+..++ |+||.+....                   
T Consensus       192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~~~~~~~p~~~~~~~~~~sk  270 (391)
T KOG2110|consen  192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVSNNPPESPTAGTSWFGKVSK  270 (391)
T ss_pred             ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccccCCCCCCCCCCcccchhhh
Confidence            5455568999998855 3444322  346889999999999999999999 9999875311                   


Q ss_pred             ------------------EEEEEecCCCcc--cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          293 ------------------LLQEVRRGADRA--EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       293 ------------------~~~~~~~~~~~~--~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                                        ...+.+.. ..+  .+..+.-.+...++..++.||.++.|.++-.+
T Consensus       271 ~~~sylps~V~~~~~~~R~FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~  333 (391)
T KOG2110|consen  271 AATSYLPSQVSSVLDQSRKFATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKE  333 (391)
T ss_pred             hhhhhcchhhhhhhhhccceeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCC
Confidence                              00011110 111  23333333567789999999999999998653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.5e-15  Score=136.84  Aligned_cols=261  Identities=13%  Similarity=0.187  Sum_probs=181.5

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC---eEEEeeCCCCCCCCCceEEEEECCCC
Q 015650           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMIWDDHQS  166 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~i~iwd~~~~  166 (403)
                      .-.|++|+++++....+.|.||...++.+.  ..+. +|...+..+.+.+.   ..++.+...+     |.|++||...+
T Consensus        21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i--~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~~~   92 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCTGNFVKVYSTATGECI--TSLE-DHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWSDG   92 (792)
T ss_pred             ccccccCCcEEEEeeCCEEEEEecchHhhh--hhcc-cccCccceeeecCCCccceEEEEEecC-----ccEEEecCCCc
Confidence            357899999999999999999999988776  5665 78888888877653   2566677777     99999999999


Q ss_pred             ceeEEEecCCceeEEEEecC----ceEE-EecC--------------eEEEEEcCCc--eeeeEeeccCCCceeEEEeeC
Q 015650          167 RCIGELSFRSEVRSVKLRRD----RIIV-VLEQ--------------KIFVYNFADL--KLLHQIETIANPKGLCAVSQG  225 (403)
Q Consensus       167 ~~~~~~~~~~~i~~~~~~~~----~~~~-~~d~--------------~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~  225 (403)
                      .+++++....++..+.+.|.    ...+ +...              +++-+.+.+.  .....+..+.. -..+..++.
T Consensus        93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~  171 (792)
T KOG1963|consen   93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNS  171 (792)
T ss_pred             EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCC
Confidence            99999986666666655331    1111 1111              1222222110  01111111211 245666776


Q ss_pred             CCeEEEEeeCCccCeEEEEEccCCceeE-----EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC--Cc--EEEE
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--GT--LLQE  296 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~~~~~~-----~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~--~~--~~~~  296 (403)
                      +....++    .+..+.+|....+....     -..|.-.+++.+++|.++++|+|..||. |.+|.--.  +.  ....
T Consensus       172 ge~~~i~----~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~vw~d~~~~~~~~t~t~  246 (792)
T KOG1963|consen  172 GEFKGIV----HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILVWRDFGSSDDSETCTL  246 (792)
T ss_pred             ceEEEEE----EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEEEeccccccccccceE
Confidence            6655444    45678888887744211     1246667899999999999999999999 99996322  22  2233


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEE
Q 015650          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF  376 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (403)
                      +.  .|...|++++|++||.+|++|+..|.+.+|.+.+++.                       .+||+           
T Consensus       247 lH--WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-----------------------qfLPR-----------  290 (792)
T KOG1963|consen  247 LH--WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-----------------------QFLPR-----------  290 (792)
T ss_pred             EE--ecccccceeEEecCCceEeecccceEEEEEeecCCCc-----------------------ccccc-----------
Confidence            44  4668999999999999999999999999999999983                       12331           


Q ss_pred             EEeCCCceEEEeccCCCEEEEEccCC
Q 015650          377 RLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       377 ~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                        -.+++..+.+|||+...++..+|.
T Consensus       291 --Lgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  291 --LGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             --cCCeeEEEEEcCCCCeEEEEecCc
Confidence              134677889999999888887774

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=5.5e-16  Score=135.15  Aligned_cols=205  Identities=13%  Similarity=0.124  Sum_probs=159.7

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCc
Q 015650           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE  177 (403)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~  177 (403)
                      ++++.+|+.+.|.+-.   ...++.+. .|...+.+-.|+++|..+++.+.|     |.|++|. ++|.+..++. ...+
T Consensus        78 ~~i~s~DGkf~il~k~---~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   78 LLICSNDGRFVILNKS---ARVERSIS-AHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             EEEEcCCceEEEeccc---chhhhhhh-hhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCce
Confidence            3444446667776532   22335555 799999999999999999999999     9999999 6666555554 7889


Q ss_pred             eeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe
Q 015650          178 VRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM  255 (403)
Q Consensus       178 i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~  255 (403)
                      |.|++|.|+..-++  ..+.+.|=-+.....+-..+.|.+-+-++.|++..+  ++++ |++|-..++||-....+..-.
T Consensus       148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~s-gGED~kfKvWD~~G~~Lf~S~  224 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIAS-GGEDFRFKIWDAQGANLFTSA  224 (737)
T ss_pred             eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcccc--ceee-cCCceeEEeecccCcccccCC
Confidence            99999999876555  567888888777777777889999888888888766  5665 559999999999988888888


Q ss_pred             ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                      .|+.+|++++|+|+ +.++.++.+ + ++            +... ..+.|..++||+||..++.|+..|.|.+=.+
T Consensus       225 ~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  225 AEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             hhccceeeeeeccc-cceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEeee
Confidence            99999999999999 666666654 3 45            2221 4478999999999999999999998765444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=8.8e-15  Score=135.06  Aligned_cols=213  Identities=11%  Similarity=0.097  Sum_probs=143.2

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  187 (403)
                      |.+||.+.....   .+. .+...+....|+|++..++..+....  ...|++||+.+++.............+.|+|||
T Consensus       186 l~i~D~~g~~~~---~lt-~~~~~v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        186 LQVADSDGYNPQ---TIL-RSAEPILSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEECCCCCCce---Eee-cCCCccccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence            788887644332   232 35567889999999877665442200  157999999888764433355556688999999


Q ss_pred             eEEE--e--cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC--eEEEEEccCCceeEEeecCC
Q 015650          188 IIVV--L--EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS  259 (403)
Q Consensus       188 ~~~~--~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~  259 (403)
                      ..++  .  ++  .|++||+.+++.. .+..+.......+|+++++.+++.+  ..++  .|+++++.++....+..+..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~g~~~~lt~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASGGSAERLTFQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEeecCCC
Confidence            8665  1  33  6999999887643 3444444446689999998776654  2333  47777777766666554445


Q ss_pred             ceEEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CcEEEEEee
Q 015650          260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLK  333 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d---g~v~iwd~~  333 (403)
                      ....++|+|||++|+..+.++   . |.+||+.+++.. .+..   ........|+|||++|+..+.+   +.|++++++
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            556789999999998765433   5 899999887765 3432   2234567999999988776643   346666664


Q ss_pred             c
Q 015650          334 V  334 (403)
Q Consensus       334 ~  334 (403)
                      .
T Consensus       412 g  412 (433)
T PRK04922        412 G  412 (433)
T ss_pred             C
Confidence            3

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=1.8e-14  Score=132.56  Aligned_cols=173  Identities=15%  Similarity=0.116  Sum_probs=118.2

Q ss_pred             ceEEEEECCCCceeEEE-ecCCceeEEEEecCceEEE--e----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      ..|.++|.. +...+.+ .+...+.+.+|+|||+.++  .    ...|++||+.+++... +...........|+|+++.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            578888864 4444444 4778899999999998777  2    2369999998886543 3333445567899999998


Q ss_pred             EEEEeeCCccCeEEEE--EccCCceeEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEE--cCCCcEEEEEecCCCc
Q 015650          229 LVLVCPGLQKGQVRVE--HYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFN--TLDGTLLQEVRRGADR  303 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~--d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd--~~~~~~~~~~~~~~~~  303 (403)
                      +++..  +.++...||  |+.++....+..+........|+|||++|+..+. ++. ..||.  +.+++... +..  ..
T Consensus       254 la~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~~-lt~--~g  327 (427)
T PRK02889        254 LAVAL--SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQR-VTF--TG  327 (427)
T ss_pred             EEEEE--ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceEE-Eec--CC
Confidence            76654  345655555  5556666666666666677899999999887665 345 56664  44554332 221  12


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCC---cEEEEEeecCC
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKG---TVHVFNLKVNS  336 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg---~v~iwd~~~~~  336 (403)
                      .......|+|||++|+..+.++   .|++||+.+++
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence            2345688999999998777554   59999998876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.68  E-value=1.1e-13  Score=128.08  Aligned_cols=231  Identities=22%  Similarity=0.354  Sum_probs=181.4

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-eeEEEec-C-CceeEEEE-ecCce-EEE----ecCeEE
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSF-R-SEVRSVKL-RRDRI-IVV----LEQKIF  197 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-~~~~~~~-~-~~i~~~~~-~~~~~-~~~----~d~~i~  197 (403)
                      .+...+..+.+...+..++.++.+     +.+.+|+...+. .+..+.. . ..+..+.+ .+++. ++.    .|+.+.
T Consensus        63 ~~~~~i~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          63 GHEDSITSIAFSPDGELLLSGSSD-----GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eccceEEEEEECCCCcEEEEecCC-----CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            577889999999998888888877     999999998886 6666652 3 36777777 77776 444    288999


Q ss_pred             EEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCC-EEE
Q 015650          198 VYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLA  274 (403)
Q Consensus       198 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~-~l~  274 (403)
                      +||... ......+..|...+..+++++++.  +++..+..++.+++|+... .....+..|...+.+++|+|++. +++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  215 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA  215 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence            999987 778888889999999999999988  3333222499999999997 55666777999999999999998 555


Q ss_pred             EEeCCCcEEEEEEcCCCcEEE-EEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcc
Q 015650          275 TSSTKGTLVRIFNTLDGTLLQ-EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (403)
Q Consensus       275 s~~~dg~~i~iwd~~~~~~~~-~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (403)
                      +++.|+. |++||...+..+. .+..  |...+ -..|++++..+++++.|+.+++|++.....                
T Consensus       216 ~~~~d~~-i~~wd~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------  275 (466)
T COG2319         216 SGSSDGT-IRLWDLSTGKLLRSTLSG--HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----------------  275 (466)
T ss_pred             EecCCCc-EEEEECCCCcEEeeecCC--CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----------------
Confidence            5589999 9999998888877 4654  44443 238999998999999999999999998772                


Q ss_pred             cccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                                        .+.....|...+..+.|.|++..+++++.|+
T Consensus       276 ------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~  306 (466)
T COG2319         276 ------------------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDG  306 (466)
T ss_pred             ------------------EEEEEecCCccEEEEEECCCCCEEEEeeCCC
Confidence                              0111244567888889999999998888775

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2.2e-15  Score=124.41  Aligned_cols=181  Identities=14%  Similarity=0.253  Sum_probs=134.7

Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEec----CceEEE-ecCeEEEEEcCCceeeeEeeccCCC-ceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRR----DRIIVV-LEQKIFVYNFADLKLLHQIETIANP-KGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~----~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  228 (403)
                      |.|++||..+++.+..++ ++..+..+.|..    ++.+.+ +||+|++||++.......+.....+ ...+++.-+-+.
T Consensus        50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~  129 (376)
T KOG1188|consen   50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK  129 (376)
T ss_pred             CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence            899999999999999999 888888888865    344444 7999999999986554444322222 234455444334


Q ss_pred             EEEEeeCC----ccCeEEEEEccCCce---eEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCc----EEEE
Q 015650          229 LVLVCPGL----QKGQVRVEHYASKRT---KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT----LLQE  296 (403)
Q Consensus       229 ~~~~~~g~----~d~~i~v~d~~~~~~---~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~----~~~~  296 (403)
                      .++++ |.    .+-.+.+||+|..+.   .....|...|++++|+| +.++|++|+.||. |.|||++...    ++.+
T Consensus       130 ~ii~~-GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~EeDaL~~v  207 (376)
T KOG1188|consen  130 NIIAC-GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNEEDALLHV  207 (376)
T ss_pred             CeEEe-ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcchhhHHHh
Confidence            35554 32    467899999998443   33568999999999999 5678999999999 9999986532    2333


Q ss_pred             EecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650          297 VRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARS  341 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~  341 (403)
                      +.   +...|..+.|..++ +.|.+-+..++..+|+++.+.++..+
T Consensus       208 iN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  208 IN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             hc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            43   55789999999877 45788889999999999999865444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=6.8e-14  Score=110.53  Aligned_cols=197  Identities=11%  Similarity=0.152  Sum_probs=144.8

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC---------Cc-eeEEEe-cCCceeEEEEecCceEEEecCeEEEE
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ---------SR-CIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVY  199 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~---------~~-~~~~~~-~~~~i~~~~~~~~~~~~~~d~~i~i~  199 (403)
                      .|.+-+++|...+++.+..+     |.|.+..++.         ++ .+...+ |..+|..++|..+-.+.+.||.|+-|
T Consensus        12 tvf~qa~sp~~~~l~agn~~-----G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw   86 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLF-----GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGW   86 (325)
T ss_pred             HHHHHhhCCcceEEEEecCC-----CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEe
Confidence            34555678888899999988     9999998753         22 233334 99999999999665555589999999


Q ss_pred             EcCCcee------eeEee--c-----cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee-EEeecCCceEEEE
Q 015650          200 NFADLKL------LHQIE--T-----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFA  265 (403)
Q Consensus       200 d~~~~~~------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~~~~~~~i~~~~  265 (403)
                      ..+....      +....  .     .-..|..+.+.|..+.++++.   .|+.++-||+++++++ .+.+|.+.|.++.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            8764321      11111  1     123467788888888776663   6899999999998864 5789999999998


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc--------ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR--------AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~--------~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      --.....+++|++||+ +||||+++++++..+....+.        ..|.+++-  +..+|++|+ ...+.+|+++..+.
T Consensus       164 ~R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~  239 (325)
T KOG0649|consen  164 GRNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES  239 (325)
T ss_pred             ecccCcceeecCCCcc-EEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence            8554556789999999 999999999999887653222        24555555  456887765 55799999999886


Q ss_pred             CC
Q 015650          338 SA  339 (403)
Q Consensus       338 ~~  339 (403)
                      ..
T Consensus       240 t~  241 (325)
T KOG0649|consen  240 TC  241 (325)
T ss_pred             eE
Confidence            43

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=6.4e-15  Score=135.18  Aligned_cols=243  Identities=16%  Similarity=0.159  Sum_probs=172.2

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEcCCCeeEE---EEecccCcceeEEEEeeeCCeE--EEeeCCCCCCCC
Q 015650           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIF---RRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYP  154 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~-~~l~~~~~~~-i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~~  154 (403)
                      ......|+|+.|+|.. .+|+.|..+| |.+||+.......   .......|...++.+.|..+-.  -+++++.|    
T Consensus       239 ~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD----  314 (555)
T KOG1587|consen  239 LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD----  314 (555)
T ss_pred             EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC----
Confidence            3356789999999965 5566666555 9999997655421   1122246888999999866433  37777778    


Q ss_pred             CceEEEEECCCCce-eEE-----E-------ecCCceeEEEEecC--ceEEE--ecCeEEEEEcCCc--------eeeeE
Q 015650          155 LNKVMIWDDHQSRC-IGE-----L-------SFRSEVRSVKLRRD--RIIVV--LEQKIFVYNFADL--------KLLHQ  209 (403)
Q Consensus       155 ~~~i~iwd~~~~~~-~~~-----~-------~~~~~i~~~~~~~~--~~~~~--~d~~i~i~d~~~~--------~~~~~  209 (403)
                       |.|+.|+++.-.. ...     .       .....+++++|.+.  ..+++  .+|.|+.-+....        +....
T Consensus       315 -G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~  393 (555)
T KOG1587|consen  315 -GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST  393 (555)
T ss_pred             -CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence             9999998765322 111     1       12345788888773  34444  3677776443321        11334


Q ss_pred             eeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc--CCceeEEeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 015650          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIF  286 (403)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~--~~~~~~~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iw  286 (403)
                      +..|.+++..+.++|-...+++.+ |  |..++||...  ...+..+..+...+++++|||-. ..++++..||. |.||
T Consensus       394 ~~~h~g~v~~v~~nPF~~k~fls~-g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iW  469 (555)
T KOG1587|consen  394 FITHIGPVYAVSRNPFYPKNFLSV-G--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIW  469 (555)
T ss_pred             ccccCcceEeeecCCCccceeeee-c--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehh
Confidence            556788999999999988877665 3  8999999876  35555666777789999999954 57788888999 9999


Q ss_pred             EcCCC--cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          287 NTLDG--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       287 d~~~~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      |+...  +++.+...  +....+.+.|++.|+.|++|...|++++|++...
T Consensus       470 DLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  470 DLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             hhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            99754  34444433  3467788899999999999999999999999654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.7e-14  Score=125.77  Aligned_cols=245  Identities=16%  Similarity=0.206  Sum_probs=167.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEE-EEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           82 SSPPPTLLHISFNQDHGCFA-AGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~-~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      -.++..-+.|..+|||+|+. +|.-. .|++||+......+.+.+.   ...|.-...+.|...++--..|     .+|.
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD---ae~V~feiLsDD~SK~v~L~~D-----R~Ie  119 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD---AEVVDFEILSDDYSKSVFLQND-----RTIE  119 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc---ccceeEEEeccchhhheEeecC-----ceee
Confidence            34667778899999999975 45444 4999999988877766664   2222223334444333333333     4554


Q ss_pred             EEECCCCceeEEEecCCceeEEEEec-C-ceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          160 IWDDHQSRCIGELSFRSEVRSVKLRR-D-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       160 iwd~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      +-. .-| .-..+.-+..-.+++++. . ..+++ +...|+-++++.|+.+..+......+.++.+++...  ++++ |.
T Consensus       120 fHa-k~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~-Gt  194 (703)
T KOG2321|consen  120 FHA-KYG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLAC-GT  194 (703)
T ss_pred             ehh-hcC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEe-cc
Confidence            432 111 111122233334555553 2 23333 677899999999999999988888899999988754  4555 66


Q ss_pred             ccCeEEEEEccCCce-eEE------eecCC-----ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc
Q 015650          237 QKGQVRVEHYASKRT-KFI------MAHDS-----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (403)
Q Consensus       237 ~d~~i~v~d~~~~~~-~~~------~~~~~-----~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (403)
                      .+|.|..||.+.+.. ..+      ..|.+     .|+++.|+.+|-.+++|+.+|. |.|||++..+++..-. |...-
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~kd-h~~e~  272 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVKD-HGYEL  272 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeecc-cCCcc
Confidence            899999999998543 222      22333     4999999999999999999999 9999999998875444 34556


Q ss_pred             cEEEEEeCCCC--CEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650          305 EIYSLAFSSNA--QWLAVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       305 ~v~~l~~s~d~--~~l~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      +|..+.|.+.+  ..|++. +...++|||-.+++....++
T Consensus       273 pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE  311 (703)
T KOG2321|consen  273 PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE  311 (703)
T ss_pred             ceeeecccccCCCceEEec-chHHhhhcccccCCceeecc
Confidence            89999997753  345544 56689999999999755544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.67  E-value=1.3e-14  Score=117.79  Aligned_cols=146  Identities=10%  Similarity=0.208  Sum_probs=107.6

Q ss_pred             EEEEecCceEEE--ec-----------CeEEEEEcCC-ceeeeEeec-cCCCceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650          180 SVKLRRDRIIVV--LE-----------QKIFVYNFAD-LKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (403)
Q Consensus       180 ~~~~~~~~~~~~--~d-----------~~i~i~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~  244 (403)
                      .+.|+++|.+|+  .+           +...+|.++. ......+.. ..++|..++|+|+++.++++. |..++.|.+|
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~ly   88 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTLY   88 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEEE
Confidence            466777776655  11           2244444422 233444433 244699999999999876664 6567899999


Q ss_pred             EccCCceeEEeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650          245 HYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (403)
Q Consensus       245 d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~  321 (403)
                      |++...+..+.  ...+..+.|+|+|++|++++.   .|. |.+||+++.+.+.+..   | ..++.++|+|||++|+++
T Consensus        89 d~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~-~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   89 DVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---H-SDATDVEWSPDGRYLATA  161 (194)
T ss_pred             cCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---c-CcEEEEEEcCCCCEEEEE
Confidence            99866655553  567789999999999999874   467 9999999988887776   4 357899999999999988


Q ss_pred             eC------CCcEEEEEee
Q 015650          322 SD------KGTVHVFNLK  333 (403)
Q Consensus       322 ~~------dg~v~iwd~~  333 (403)
                      ..      |+.++||++.
T Consensus       162 ~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EeccceeccccEEEEEec
Confidence            63      7889999995

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=4.3e-14  Score=130.67  Aligned_cols=217  Identities=12%  Similarity=0.055  Sum_probs=148.7

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  187 (403)
                      |.++|.+.....   .+. .+...+....|+|++..++..+...  ....|++||+.+++......+...+....|+|||
T Consensus       184 l~~~d~dg~~~~---~lt-~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        184 LAIMDQDGANVR---YLT-DGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             EEEECCCCCCcE---EEe-cCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence            777776544332   232 4666889999999987666543210  0168999999888764433366778889999999


Q ss_pred             eEEE--e--c--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCce
Q 015650          188 IIVV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (403)
Q Consensus       188 ~~~~--~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i  261 (403)
                      ..++  .  +  ..|++||+.+++. ..+..+........|+|+++.+++++.......|+++|+.++..+.+..+...+
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~  336 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY  336 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence            8765  2  3  3588889987765 344444445567899999998776652223357888898887777776666667


Q ss_pred             EEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC------CcEEEEEe
Q 015650          262 ACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------GTVHVFNL  332 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d------g~v~iwd~  332 (403)
                      ....|+|||++|+....++   . |.+||+..+.. +.+..   ...+..+.|+|||+.|+..+.+      ..|+++|+
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~~-~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSGE-RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceE-EEEEECCCCce-EeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            7889999999998766532   4 88899765543 44442   2346788999999998766542      25677777


Q ss_pred             ecCC
Q 015650          333 KVNS  336 (403)
Q Consensus       333 ~~~~  336 (403)
                      +.++
T Consensus       412 ~g~~  415 (435)
T PRK05137        412 TGRN  415 (435)
T ss_pred             CCCc
Confidence            5544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.3e-13  Score=109.00  Aligned_cols=234  Identities=15%  Similarity=0.216  Sum_probs=158.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCee------EEEEecc----cCcceeEEEEeeeCCeEEEeeCCC
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE------IFRRDFE----RGGGIGVVEMLFRCNILALVGGGP  149 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~------~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~  149 (403)
                      ....|.++|+.++|.  ..+|.+|+|+.|+-|..+...+      ..+....    ...--.|.++...|...-++.++.
T Consensus        57 ~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG  134 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG  134 (325)
T ss_pred             eccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence            347899999999998  4588888887799998754332      1111111    011224556666654333333334


Q ss_pred             CCCCCCceEEEEECCCCceeEEEe-cCCceeEEEE-ecCceEEE--ecCeEEEEEcCCceeeeEeeccCCC--------c
Q 015650          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKL-RRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP--------K  217 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~-~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~--------~  217 (403)
                      |     +.++-||+++|+..++++ |.+.|.++.- +..+.++.  .||++++||+++++.++.+....++        -
T Consensus       135 D-----~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~  209 (325)
T KOG0649|consen  135 D-----GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK  209 (325)
T ss_pred             C-----eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc
Confidence            5     999999999999999999 9999999998 55666666  6999999999999998887543321        1


Q ss_pred             eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      .+.++.-+.+  +++|.|  ...+.+|.++..+...+..-...+..+.|..  +.+++++..+. |.-|.+ +|.....+
T Consensus       210 wigala~~ed--WlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~-v~~~~l-~Gvl~a~i  281 (325)
T KOG0649|consen  210 WIGALAVNED--WLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNH-VQSYTL-NGVLQANI  281 (325)
T ss_pred             eeEEEeccCc--eEEecC--CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccc-eeeeee-ccEEEEec
Confidence            2234444444  667733  4789999999988777777778888899954  45677776666 999976 56555555


Q ss_pred             ecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEE
Q 015650          298 RRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVF  330 (403)
Q Consensus       298 ~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iw  330 (403)
                      ...  ....++..|+..- +.|-.++....+.|+
T Consensus       282 p~~--s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  282 PVE--STACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cCC--ccceeeecccCCceEEEEecccceeeeee
Confidence            542  2345555554332 345556666777665

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.66  E-value=5.3e-14  Score=115.87  Aligned_cols=131  Identities=13%  Similarity=0.093  Sum_probs=93.1

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEe-eCCCCCCCCCceEEEEECCCCcee
Q 015650           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDPQYPLNKVMIWDDHQSRCI  169 (403)
Q Consensus        91 i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-s~~~d~~~~~~~i~iwd~~~~~~~  169 (403)
                      ..|+|+|+++|+..+-.+.|-|.++.+..  +.+.  --..|.-+.|..+..++. ....+     +.|.+|++...+-.
T Consensus        14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~--qlf~--cldki~yieW~ads~~ilC~~yk~-----~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRYRLVIRDSETLQLH--QLFL--CLDKIVYIEWKADSCHILCVAYKD-----PKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeeeeeEEEEeccchhhHH--HHHH--HHHHhhheeeeccceeeeeeeecc-----ceEEEEEeecceeE
Confidence            57999999999999888888887765543  2221  234566677777665544 44445     89999999998888


Q ss_pred             EEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          170 GELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       170 ~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      ..+. ...++..++|+|||+.+.    .+-.|.+|.+.+.+... ++-....+..++|+++++...+
T Consensus        85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai  150 (447)
T KOG4497|consen   85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAI  150 (447)
T ss_pred             EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeee
Confidence            8888 788999999999997666    47899999998765432 2222333455666666654333

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.65  E-value=4.5e-16  Score=142.34  Aligned_cols=198  Identities=14%  Similarity=0.238  Sum_probs=154.0

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcC
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA  202 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~  202 (403)
                      +|...|.+..|...+.+++++++|     ..++||..+++.++..+. |.+.|+.++.+.++.+++   .|..|++|.+.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            788899999999999999999999     999999999999999998 999999999999988888   47889999999


Q ss_pred             CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE----------------------------
Q 015650          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI----------------------------  254 (403)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~----------------------------  254 (403)
                      ++.++..+.+|.+.|+.++|+|-.      + .+.||++++||.+-......                            
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~------s-ss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA------S-SSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc------c-CCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            999999999999999999999964      2 35899999999883111000                            


Q ss_pred             ---eecCCceEEEEEcCCCCEEEE-----------EeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEE-E
Q 015650          255 ---MAHDSRIACFALTQDGQLLAT-----------SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL-A  319 (403)
Q Consensus       255 ---~~~~~~i~~~~~sp~g~~l~s-----------~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l-~  319 (403)
                         ......+.+++|...+-.+++           +-.+-. +++|++.+|.....+.+  |...+..|.++|-+..+ .
T Consensus       336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecCCCcHhhh
Confidence               000011122222222222333           223444 78899888888777775  66788999999976654 5


Q ss_pred             EEeCCCcEEEEEeecCCCCC
Q 015650          320 VSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       320 s~~~dg~v~iwd~~~~~~~~  339 (403)
                      +++.||...|||+-.+.++.
T Consensus       413 sag~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  413 SAGYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             hccCCCceEeeecccCCcce
Confidence            88999999999999988643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=2e-13  Score=120.17  Aligned_cols=263  Identities=10%  Similarity=0.147  Sum_probs=170.2

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC-----CceEEEEE
Q 015650           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP-----LNKVMIWD  162 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~-----~~~i~iwd  162 (403)
                      .+..+++++|+++|.+.+..++|++......++ ...   . ..+.++.|+|.+.++.+-..-..+.     .-.+.+|+
T Consensus        37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~l-t~~---~-~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVL-CVE---L-KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEE-Eec---c-ceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            567789999999999999999999988776332 222   2 2889999999888877644321111     13577999


Q ss_pred             CCCCceeEEEe--cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe----e
Q 015650          163 DHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----P  234 (403)
Q Consensus       163 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  234 (403)
                      ++++.....+.  .... ++..|+.|..+.+  ..+.+++|++...+.+. -+.+...+..+.++|.+....+++    .
T Consensus       112 vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~  189 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEK  189 (566)
T ss_pred             eccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCC
Confidence            98866555555  2222 5778888877776  57777888766522111 112233444444444433222222    0


Q ss_pred             CCccCeEEEE---------------------------------------------------------EccCCceeEEeec
Q 015650          235 GLQKGQVRVE---------------------------------------------------------HYASKRTKFIMAH  257 (403)
Q Consensus       235 g~~d~~i~v~---------------------------------------------------------d~~~~~~~~~~~~  257 (403)
                      ++.-..++||                                                         ++.+.....--..
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k  269 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK  269 (566)
T ss_pred             CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence            1122233333                                                         3332222222234


Q ss_pred             CCceEEEEEcCCCCEEEE--EeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC---CCcEEEEEe
Q 015650          258 DSRIACFALTQDGQLLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNL  332 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s--~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~---dg~v~iwd~  332 (403)
                      .++|.++.|+|+|+-+++  |-.-.. +.|||+ .+.++..+.    .++=+++-|+|.|++|+.++.   .|.|-|||+
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            789999999999987754  444556 999997 577777775    356788999999999998874   578999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650          333 KVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                      .+.+.+.++.                                   .  ..-+.+.|+|||+++++++.
T Consensus       344 ~n~K~i~~~~-----------------------------------a--~~tt~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  344 PNRKLIAKFK-----------------------------------A--ANTTVFEWSPDGEYFLTATT  374 (566)
T ss_pred             cchhhccccc-----------------------------------c--CCceEEEEcCCCcEEEEEec
Confidence            9977533321                                   1  12345899999999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=7.5e-14  Score=128.47  Aligned_cols=204  Identities=14%  Similarity=0.119  Sum_probs=131.9

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  187 (403)
                      |.++|.+....   +.+. .+...+....|+|++..++..+...  ....|++||+.+++..........+....|+|||
T Consensus       178 L~~~D~dG~~~---~~l~-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        178 LQISDADGQNA---QSAL-SSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDG  251 (427)
T ss_pred             EEEECCCCCCc---eEec-cCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            66666543322   2222 3556788999999987766543220  0146999999988765443355667789999999


Q ss_pred             eEEE--e--cCe--EEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEE--ccCCceeEEeecCC
Q 015650          188 IIVV--L--EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH--YASKRTKFIMAHDS  259 (403)
Q Consensus       188 ~~~~--~--d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d--~~~~~~~~~~~~~~  259 (403)
                      ..++  .  ++.  |+++|+..++ ...+..+........|+|+++.+++++  ..++...+|.  +.++....+..+..
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~~~~lt~~g~  328 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGAAQRVTFTGS  328 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCceEEEecCCC
Confidence            8766  2  554  5555665544 444544444456688999999876654  2345555554  45555544443344


Q ss_pred             ceEEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      ......|+|||++|+..+.++   . |.+||+.+++... +..   ......+.|+|||++|+.++.++
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~-I~v~d~~~g~~~~-lt~---~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFK-LYVQDLATGQVTA-LTD---TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEE-EEEEECCCCCeEE-ccC---CCCccCceECCCCCEEEEEEecC
Confidence            455688999999998776554   5 9999998887543 332   12346789999999988777443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.65  E-value=1.7e-13  Score=126.69  Aligned_cols=176  Identities=14%  Similarity=0.133  Sum_probs=126.6

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      ..|.++|...........+...+....|+|||+.++.      ...|++||+.+++... +.........++|+|+++.+
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            5688888754444333346667889999999998882      2479999998875443 23344455678999999887


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEI  306 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (403)
                      ++......+..|++||+.++....+..+........|+|||++|+..+..+   . |+++|+.+++... +..  +...+
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~~-l~~--~~~~~  324 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVRR-LTF--RGGYN  324 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEEE-eec--CCCCc
Confidence            665433334569999998887777766666566789999999988766532   4 8888887776543 332  33567


Q ss_pred             EEEEeCCCCCEEEEEeCCC---cEEEEEeecCC
Q 015650          307 YSLAFSSNAQWLAVSSDKG---TVHVFNLKVNS  336 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~dg---~v~iwd~~~~~  336 (403)
                      ..+.|+|||++|+.++.++   .|.+||+.++.
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            7889999999999888765   78888887754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.1e-13  Score=115.45  Aligned_cols=227  Identities=18%  Similarity=0.178  Sum_probs=152.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCCCCceEEEEE
Q 015650           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      +-.+..++|++.--.+|++. |+.|++|+-.....   ..++......+.+++|.|.+ ..++.+.+      +-|+||.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p---t~Lks~sQrnvtclawRPlsaselavgCr------~gIciW~  168 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP---TKLKSVSQRNVTCLAWRPLSASELAVGCR------AGICIWS  168 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC---ceecchhhcceeEEEeccCCcceeeeeec------ceeEEEE
Confidence            34678899999766667766 77799999765222   33332355688999998853 23444444      5799997


Q ss_pred             CCCC----c--------eeEEEe--cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650          163 DHQS----R--------CIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       163 ~~~~----~--------~~~~~~--~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (403)
                      ....    .        ....++  ...+|+++.|++||..++    .|..|.|||..++..+.......+.+..+.|+|
T Consensus       169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP  248 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP  248 (445)
T ss_pred             cCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence            5321    1        122333  346899999999999888    378999999999887766645567778999999


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC----C--------
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----G--------  291 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~----~--------  291 (403)
                      +++.++.++   -|+..++|.... ..........+.|...+|+|+|++|...+....  ++|.+.-    .        
T Consensus       249 dgd~lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~  323 (445)
T KOG2139|consen  249 DGDVLFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSI  323 (445)
T ss_pred             CCCEEEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccc
Confidence            999766554   789999995443 333333334558999999999998876655443  4554421    0        


Q ss_pred             cE---EEEEe-----cC--CCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          292 TL---LQEVR-----RG--ADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       292 ~~---~~~~~-----~~--~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      +.   +..+.     .+  ...+.+.+|+|.|.|.+||+.-..+
T Consensus       324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence            00   11110     00  0135788999999999999876443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.63  E-value=1.9e-14  Score=114.93  Aligned_cols=234  Identities=12%  Similarity=0.089  Sum_probs=151.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-----Ce----EEEeeCCCCCCC
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-----NI----LALVGGGPDPQY  153 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~----~~~~s~~~d~~~  153 (403)
                      .|...|+.+.--|+++++.-|-|..+.+|++....-.....      ..+.++.|.+     +.    ..++.-++. . 
T Consensus        54 ~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~S------i~~nslgFCrfSl~~~~k~~eqll~yp~rg-s-  125 (323)
T KOG0322|consen   54 FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHS------IVVNSLGFCRFSLVKKPKNSEQLLEYPSRG-S-  125 (323)
T ss_pred             hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEee------eeccccccccceeccCCCcchhheecCCcc-c-
Confidence            57788999999998776666667779999997654443332      2333333322     11    112222111 0 


Q ss_pred             CCceEEEEECCCCceeEEEe-----cCCceeEEEEec-CceE-EE----ecCeEEEEEcCCceee----------eEeec
Q 015650          154 PLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRR-DRII-VV----LEQKIFVYNFADLKLL----------HQIET  212 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~-~~----~d~~i~i~d~~~~~~~----------~~~~~  212 (403)
                        ..+.+-|......++...     ..+.+.+..+.. ++.. ++    .+|.+.+||+.++..+          .....
T Consensus       126 --de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as  203 (323)
T KOG0322|consen  126 --DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS  203 (323)
T ss_pred             --chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence              112222222212222221     234566665433 2332 22    4899999999987333          33345


Q ss_pred             cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ce---eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~---~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd  287 (403)
                      |..++..+.+.+.-+.-+   .|+.+..+..|.+...  .+   ..+.-.+..+..+.+-||+++||+++.|+. ||||+
T Consensus       204 h~qpvlsldyas~~~rGi---sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVys  279 (323)
T KOG0322|consen  204 HKQPVLSLDYASSCDRGI---SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYS  279 (323)
T ss_pred             ccCcceeeeechhhcCCc---CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEE
Confidence            666777777665332211   2445667888887652  22   223334556889999999999999999999 99999


Q ss_pred             cCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                      .++..++..++-  |...|++++|+||...+|.++.|++|-+|++
T Consensus       280 wrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  280 WRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999986  7799999999999999999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.63  E-value=2.5e-15  Score=133.62  Aligned_cols=141  Identities=15%  Similarity=0.252  Sum_probs=111.8

Q ss_pred             ecCeEEEEEcCC-ceeee-Eeec--cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--------ceeEEeecCC
Q 015650          192 LEQKIFVYNFAD-LKLLH-QIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--------RTKFIMAHDS  259 (403)
Q Consensus       192 ~d~~i~i~d~~~-~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--------~~~~~~~~~~  259 (403)
                      ..|.|-||+++. |++-. .+.+  ....+..+.|.|-....+.+  +.+||.|++|.+..+        ....+..|..
T Consensus       601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAV--a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e  678 (1012)
T KOG1445|consen  601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAV--ATDDGQINLWRLTANGLPENEMTPEKILTIHGE  678 (1012)
T ss_pred             CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeee--cccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence            378999999986 33211 1111  23456667777755544332  248999999998762        2356789999


Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          260 RIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       260 ~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .|+++.|+| ....|++++.|-+ |++||+.+++....+.+  |...|.+++|||||+.+|+.+.||+|++|+-++.+.
T Consensus       679 KI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~g--HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  679 KITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVG--HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             eEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheecc--CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            999999999 4568899999999 99999999999888886  779999999999999999999999999999988763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=6.2e-13  Score=118.74  Aligned_cols=189  Identities=14%  Similarity=0.154  Sum_probs=123.9

Q ss_pred             CEEEEE-c-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650           98 GCFAAG-T-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (403)
Q Consensus        98 ~~l~~~-~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~  175 (403)
                      .++++. . ++.|.|.|..+.+..  ..+..+. .....+.+++|+.+++..++|     |.|.++|+.+++.+.+++..
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~--~~i~~~~-~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G   77 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVV--ARIPTGG-APHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVG   77 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEE--EEEE-ST-TEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-S
T ss_pred             cEEEEEecCCCEEEEEECCCCeEE--EEEcCCC-CceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecC
Confidence            344433 3 455999998887665  4554222 235567789988777767778     99999999999999999977


Q ss_pred             CceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCC-------CceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650          176 SEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIAN-------PKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~d~~i~v~  244 (403)
                      ....++++++||++++    ..+.+.++|.++.+.++.+.....       .+..+..++....+++..  -+.+.|.+.
T Consensus        78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vV  155 (369)
T PF02239_consen   78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVV  155 (369)
T ss_dssp             SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEE
T ss_pred             CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEEE
Confidence            7889999999999888    378999999999999988865322       334455566665544443  345788888


Q ss_pred             EccCCc-e-eEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEE
Q 015650          245 HYASKR-T-KFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       245 d~~~~~-~-~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~  297 (403)
                      |+.... . ..............|+|+++|++.+.. ... |-++|.++++.+..+
T Consensus       156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALI  210 (369)
T ss_dssp             ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEE
T ss_pred             EeccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEe
Confidence            876633 2 223334556788999999999877544 445 888888877665544

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1e-12  Score=121.67  Aligned_cols=175  Identities=19%  Similarity=0.140  Sum_probs=123.1

Q ss_pred             eEEEEECCCCceeEEEecCCceeEEEEecCceEEE--e--c--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      .|.++|...+.......+...+....|+|||..++  .  +  ..|++||+.+++... +...........|+|+++.++
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence            58888877555444445777889999999998876  2  2  369999998876533 322334445689999999877


Q ss_pred             EEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-C--cEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      +......+..|++||+.++....+..+........|+|||+.|+..+.. +  . |+++|+.+++..+....   .....
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~-iy~~d~~~g~~~~lt~~---~~~~~  334 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ-IYKVNVNGGRAERVTFV---GNYNA  334 (430)
T ss_pred             EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeecC---CCCcc
Confidence            6553323347888999998877777666667778999999988766643 2  4 77888887775433321   12344


Q ss_pred             EEEeCCCCCEEEEEeCC-C--cEEEEEeecCC
Q 015650          308 SLAFSSNAQWLAVSSDK-G--TVHVFNLKVNS  336 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~d-g--~v~iwd~~~~~  336 (403)
                      ...|+|||++|+..+.+ +  .|.+||+.+++
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            67899999999877643 3  47888888765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.62  E-value=1.4e-11  Score=110.16  Aligned_cols=241  Identities=19%  Similarity=0.210  Sum_probs=156.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcC----C-cEEEEEcCCC--eeEEEEecccCcceeEEEEeeeCCeEEEeeCC-CCCCCCCce
Q 015650           86 PTLLHISFNQDHGCFAAGTD----H-GFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNK  157 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~----~-~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~  157 (403)
                      .....++++|++++|.+..+    . +|..|.+...  +........ ........+..++++.+++.+. .+     |.
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~~-----g~  110 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYGG-----GS  110 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETTT-----TE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEccC-----Ce
Confidence            34566889999999988764    2 3889988764  433333332 1334445677777776655543 24     89


Q ss_pred             EEEEECCC-CceeEE---Eec-----------CCceeEEEEecCceEEE-e---cCeEEEEEcCCce--ee--eEeec-c
Q 015650          158 VMIWDDHQ-SRCIGE---LSF-----------RSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLK--LL--HQIET-I  213 (403)
Q Consensus       158 i~iwd~~~-~~~~~~---~~~-----------~~~i~~~~~~~~~~~~~-~---d~~i~i~d~~~~~--~~--~~~~~-~  213 (403)
                      |.++++.. +.+...   +.+           .....++.++|++++++ .   ...|++|++....  +.  ..+.. .
T Consensus       111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~  190 (345)
T PF10282_consen  111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP  190 (345)
T ss_dssp             EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred             EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence            99999987 433222   212           24567899999998777 2   5689999997644  21  22221 2


Q ss_pred             CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc--CCceeEE---ee------cCCceEEEEEcCCCCEEEEEeCCCcE
Q 015650          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFI---MA------HDSRIACFALTQDGQLLATSSTKGTL  282 (403)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~--~~~~~~~---~~------~~~~i~~~~~sp~g~~l~s~~~dg~~  282 (403)
                      ...-..+.|+++++.+|++.  ..++.|.++++.  .+....+   ..      .......|+++|||++|+++......
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s  268 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS  268 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred             CCCCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence            23346899999999888775  578899999988  3333222   11      11257889999999999887754433


Q ss_pred             EEEEEcC--CCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650          283 VRIFNTL--DGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       283 i~iwd~~--~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                      |.+|++.  +++  .+..+..  .....+.++++|+|++|+++. .++.|.+|+++...
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             EEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            9999983  343  3334443  224589999999999998887 67799999997554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=2e-15  Score=129.45  Aligned_cols=200  Identities=15%  Similarity=0.198  Sum_probs=168.1

Q ss_pred             ceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCcee
Q 015650          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKL  206 (403)
Q Consensus       129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~  206 (403)
                      ..+-..+.+..+|..++.+++.     |.|..+|..++++..++...+.|.++.|-.+..+++  -.+.++||| ..|..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtE  202 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTE  202 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcE
Confidence            3455778899999999999998     999999999999999999889999999998888877  478999999 56777


Q ss_pred             eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      ++.++.+. .+.-+.|-|.  ++++++ ++..|.++.-|+..+.+ ..+....+.+..|+-+|-...+-+|..+|+ |.+
T Consensus       203 lHClk~~~-~v~rLeFLPy--HfLL~~-~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSl  277 (545)
T KOG1272|consen  203 LHCLKRHI-RVARLEFLPY--HFLLVA-ASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSL  277 (545)
T ss_pred             EeehhhcC-chhhhcccch--hheeee-cccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEe
Confidence            77776543 4566666665  344554 55889999999998664 456666788889999999999999999999 999


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~  341 (403)
                      |.-.+.+++..+..  |.++|.+|++.++|+|++|.+.|..|+|||++......++
T Consensus       278 WSP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  278 WSPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             cCCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            99988888877776  7899999999999999999999999999999998755444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.61  E-value=4.7e-15  Score=122.00  Aligned_cols=179  Identities=15%  Similarity=0.176  Sum_probs=139.7

Q ss_pred             EEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeE
Q 015650          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQ  209 (403)
Q Consensus       134 ~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~  209 (403)
                      -..|+|++.++++..+      -.+.|-|.++-+..+.+.--..|.-+.|..|..++.    -++.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence            3568999999999887      477888887777666555556777889998877665    388999999998888888


Q ss_pred             eeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCc--EEEEEE
Q 015650          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFN  287 (403)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~--~i~iwd  287 (403)
                      ++....++..++|+|+++++++.+  .-+-.|.+|.+.++....+.-.+..+..++|+|||++.+.++....  -+.|..
T Consensus        87 Ideg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            888888999999999999876654  5788999999999988888776777899999999999988776432  033443


Q ss_pred             cCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      .+....++.+..  ..-..+.+.|+|||..||+-.
T Consensus       165 c~~W~ll~~f~~--dT~DltgieWsPdg~~laVwd  197 (447)
T KOG4497|consen  165 CKAWILLKEFKL--DTIDLTGIEWSPDGNWLAVWD  197 (447)
T ss_pred             hHHHHHHHhcCC--CcccccCceECCCCcEEEEec
Confidence            444555666664  345678999999999988753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.3e-14  Score=127.10  Aligned_cols=238  Identities=13%  Similarity=0.146  Sum_probs=158.9

Q ss_pred             CCCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeC--CeEEEeeCCCCC
Q 015650           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDP  151 (403)
Q Consensus        75 ~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~  151 (403)
                      ..++..+.+|++.|+|+.|+.||.+|++|+|+. +.|||.-..+.+  ..+..+|...|.+..|-|  +...++++..| 
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnnriv~sgAgD-  116 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNNRIVLSGAGD-  116 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCCCeEEEeccCc-
Confidence            445567899999999999999999999999887 999998755544  555558999999999976  56778888888 


Q ss_pred             CCCCceEEEEECCCC----------ceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCcee-e--------
Q 015650          152 QYPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL-L--------  207 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~-~--------  207 (403)
                          ..|+++|+...          +....+. |...|..++..|++-.++    .||+|+-||++.... .        
T Consensus       117 ----k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~  192 (758)
T KOG1310|consen  117 ----KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI  192 (758)
T ss_pred             ----ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence                99999998742          2233344 888999999999874333    599999999986211 1        


Q ss_pred             -eEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE------EeecCCceEEEE-EcCCCCEEEEEeCC
Q 015650          208 -HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------IMAHDSRIACFA-LTQDGQLLATSSTK  279 (403)
Q Consensus       208 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~------~~~~~~~i~~~~-~sp~g~~l~s~~~d  279 (403)
                       ..+....-...++.++|..... ++. |..|...++||.+......      .........|+. |+|++-    ...+
T Consensus       193 l~ny~~~lielk~ltisp~rp~~-laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~  266 (758)
T KOG1310|consen  193 LVNYNPQLIELKCLTISPSRPYY-LAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQ  266 (758)
T ss_pred             HHHhchhhheeeeeeecCCCCce-EEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcc
Confidence             1111112234578888877654 444 5589999999965422110      000111122221 233221    1112


Q ss_pred             CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      |.           ....+      ..++-+.|+|+|.-|++.-....|+++|+..++....+.
T Consensus       267 gn-----------~~~~~------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  267 GN-----------LDRYI------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             cc-----------cccce------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence            21           10011      246778999999887776666789999999988755544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.61  E-value=6.6e-14  Score=114.89  Aligned_cols=208  Identities=15%  Similarity=0.189  Sum_probs=153.0

Q ss_pred             cCCceeEEEEecCceEEE---ecCeEEEEEcCCc---eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          174 FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      ...+|++.+|++|+..++   ....|.||.....   +..+++..|...++.+.|+|..+.+.  + ++.|..-+||...
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv--t-cs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV--T-CSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee--E-ccCCCCccccccC
Confidence            568999999999999888   3668999987653   56788899999999999999987643  2 3589999999984


Q ss_pred             C----CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE--E-EEEecCCCcccEEEEEeCCCCCEEEE
Q 015650          248 S----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--L-QEVRRGADRAEIYSLAFSSNAQWLAV  320 (403)
Q Consensus       248 ~----~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~-~~~~~~~~~~~v~~l~~s~d~~~l~s  320 (403)
                      .    ++...+..++...+++.|+|.++.+|+|+.-.. |.||-++...-  + +.++ ..+.+.|+++.|+|++-+|++
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~-isVcy~E~ENdWWVsKhik-kPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL-ISVCYYEQENDWWVSKHIK-KPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccE-EEEEEEecccceehhhhhC-CccccceeeeeccCCcceecc
Confidence            3    445667788999999999999999999999888 99987654321  1 1122 225688999999999999999


Q ss_pred             EeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650          321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       321 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                      |+.|+..++|..--.....+..+..+      .+.+.| +.++          .+.....+.+..+.|+|+|+.|+-.+.
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pW------gsk~PF-G~lm----------~E~~~~ggwvh~v~fs~sG~~lawv~H  226 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPW------GSKMPF-GQLM----------SEASSSGGWVHGVLFSPSGNRLAWVGH  226 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCC------ccCCcH-HHHH----------HhhccCCCceeeeEeCCCCCEeeEecC
Confidence            99999999998755443222111100      111111 1122          112233567888999999999999998


Q ss_pred             CCC
Q 015650          401 DGR  403 (403)
Q Consensus       401 dG~  403 (403)
                      |++
T Consensus       227 ds~  229 (361)
T KOG1523|consen  227 DST  229 (361)
T ss_pred             CCc
Confidence            874

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=2.3e-14  Score=125.90  Aligned_cols=233  Identities=14%  Similarity=0.074  Sum_probs=170.0

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC--------CceeEEEe-cCCceeEEEEecCceEEE---ecC
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--------SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQ  194 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~--------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~  194 (403)
                      .|...+..+.|.+-.-.+++++.+     |.|++|++..        -+++.+|. |.++|.|+++.+++..++   .||
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed-----~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASED-----GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccc-----cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            577788888898888899999999     9999999932        14677777 999999999999999888   499


Q ss_pred             eEEEEEcCCc----------eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee--cCCceE
Q 015650          195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIA  262 (403)
Q Consensus       195 ~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~--~~~~i~  262 (403)
                      +|+.|++...          .....+.+|.+.+..++++...+.++. |  +.||++++|+.......++..  ..+.-.
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls-c--s~DgTvr~w~~~~~~~~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS-C--SSDGTVRLWEPTEESPCTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee-e--cCCceEEeeccCCcCccccCCccccCCcc
Confidence            9999966421          233456789999999999998877443 3  479999999988766543332  223345


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC-----cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          263 CFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       263 ~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~-----~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ++.|-... .++++...-+. -.++++.....+..+.....     ...+..+.++|.+.+.+++..|+.|+++|..+++
T Consensus       444 svd~~ss~~a~~~~s~~~~~-~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGY-TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             eEeeccchhHhhhhhccccc-ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            55553322 22222222332 33445555554444443211     1357889999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ...                                   ....|...++++++-|+|-+|++++.||+
T Consensus       523 ~l~-----------------------------------s~~a~~~svtslai~~ng~~l~s~s~d~s  554 (577)
T KOG0642|consen  523 ILH-----------------------------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGS  554 (577)
T ss_pred             cch-----------------------------------heeeccceecceeecCCCceEEeecCCce
Confidence            522                                   24556778999999999999999999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=2e-13  Score=128.42  Aligned_cols=241  Identities=16%  Similarity=0.262  Sum_probs=163.3

Q ss_pred             CCCCeEEEEEcC--CCCEEEEEcCCc-EEEEEcCCC---eeEEEEecc-------cCcceeEEEEeeeC-CeEEEeeCCC
Q 015650           84 PPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPF---REIFRRDFE-------RGGGIGVVEMLFRC-NILALVGGGP  149 (403)
Q Consensus        84 ~~~~i~~i~~s~--d~~~l~~~~~~~-i~iw~~~~~---~~~~~~~~~-------~~~~~~v~~~~~~~-~~~~~~s~~~  149 (403)
                      ....|+.+.+-.  |..++.+|+++| ||||+--..   +..+.....       ...... .-+.|.. .|..+++|+ 
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd- 1185 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGD- 1185 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecCC-
Confidence            455788888844  456778887666 999974211   111111111       111111 2334444 355555554 


Q ss_pred             CCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEec-CceEEE---ecCeEEEEEcCCc---eeeeEeeccCCC--ce
Q 015650          150 DPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL---KLLHQIETIANP--KG  218 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~--~~  218 (403)
                      -     ..|+|||....+.+..+.  ....|+++.-+- .|..++   .||.|++||.+..   ..+...+.|...  |.
T Consensus      1186 ~-----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1186 V-----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred             e-----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence            3     799999999888888877  455667666544 345555   6999999998763   345566677766  67


Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccCCce---eEEeecC--C-ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAHD--S-RIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~---~~~~~~~--~-~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (403)
                      .+.+.+.|-..++  +|+.+|.|++||++....   ..+..|.  + ..+++..+++...+|+|+. +. |+||++ .|+
T Consensus      1261 ~~slq~~G~~elv--Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~ 1335 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELV--SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGE 1335 (1387)
T ss_pred             eEEeecCCCccee--eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chh
Confidence            7777776655333  367999999999998322   2233333  3 5999999999999999998 77 999997 455


Q ss_pred             EEEEEecC-----CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          293 LLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       293 ~~~~~~~~-----~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .+..++..     ...+.+.+++|+|..-+||+|+.|.+|.||....++
T Consensus      1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            55444421     123568999999998899999999999999887765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=9.8e-13  Score=109.85  Aligned_cols=248  Identities=13%  Similarity=0.164  Sum_probs=162.7

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCce-EEE--ecCeEEEEEcC
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRI-IVV--LEQKIFVYNFA  202 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~-~~~--~d~~i~i~d~~  202 (403)
                      ....+..++|++....++.+..|     -.|++|+-.. ++...++  ....|++++|-|.+. .++  ..+-|.+|...
T Consensus        97 s~~dlr~~aWhqH~~~fava~nd-----dvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s  170 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHIIAFAVATND-----DVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDS  170 (445)
T ss_pred             hhcceeeEeechhhhhhhhhccC-----cEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcC
Confidence            34567778888888888888888     8999999555 6666676  567899999999643 333  57889999865


Q ss_pred             C----cee--------eeEe--eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe-ecCCceEEEEEc
Q 015650          203 D----LKL--------LHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALT  267 (403)
Q Consensus       203 ~----~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~i~~~~~s  267 (403)
                      .    ++.        .+.+  .+| .+|..+.|.+|+..+  +++.-.+..|.|||..++....+. ...+.++-+.||
T Consensus       171 ~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l--~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS  247 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTIL--VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS  247 (445)
T ss_pred             cccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEE--eecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence            3    111        1111  222 567888888887654  444456889999999997776665 455678899999


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCC
Q 015650          268 QDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRST  346 (403)
Q Consensus       268 p~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  346 (403)
                      |||.+|.++.-|+. .++|+.. +....+-..   ..+.|....|+|+|+.|+... .|.-++|.+...+.-........
T Consensus       248 Pdgd~lfaAt~dav-frlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~  322 (445)
T KOG2139|consen  248 PDGDVLFAATCDAV-FRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQS  322 (445)
T ss_pred             CCCCEEEEecccce-eeeehhcccceecceec---cCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCccc
Confidence            99999999999999 9999543 344444444   346899999999999876554 33456677765553221110000


Q ss_pred             CCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650          347 SDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                      .....      . ..-+++...    .+--++-.+...+++|.|.|++||+.-.
T Consensus       323 ~k~~l------l-iaDL~e~ti----~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  323 IKRVL------L-IADLQEVTI----CAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             ceeee------e-eccchhhhh----hcCcccccCccceeeECCCCCEEEEEEc
Confidence            00000      0 001110000    0001222467889999999999998654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=3.8e-13  Score=113.36  Aligned_cols=248  Identities=15%  Similarity=0.142  Sum_probs=169.5

Q ss_pred             CCCCCCeEEEEEcCCCC--EEEEE-cCCcEEEEEcCCCeeEEEE----ecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           82 SSPPPTLLHISFNQDHG--CFAAG-TDHGFRIYNCDPFREIFRR----DFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~--~l~~~-~~~~i~iw~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      ......|..++|.-|++  .|... .+..+..+.+.........    ... .....|..+......+.++..+      
T Consensus        52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~-l~~~~I~gl~~~dg~Litc~~s------  124 (412)
T KOG3881|consen   52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVS-LGTKSIKGLKLADGTLITCVSS------  124 (412)
T ss_pred             cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccc-cccccccchhhcCCEEEEEecC------
Confidence            33456788888976664  34444 2444666665543322111    121 3445666666655544444333      


Q ss_pred             CceEEEEECCCCc----eeEEEecCCceeEEEEecCceEEE-e---c--CeEEEEEcCCceeeeEeeccCC---------
Q 015650          155 LNKVMIWDDHQSR----CIGELSFRSEVRSVKLRRDRIIVV-L---E--QKIFVYNFADLKLLHQIETIAN---------  215 (403)
Q Consensus       155 ~~~i~iwd~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~-~---d--~~i~i~d~~~~~~~~~~~~~~~---------  215 (403)
                       |.+.+|..+.+.    .+..+.....+..+.-.+....++ +   .  +.+.+||++..+.+.+-+...+         
T Consensus       125 -G~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv  203 (412)
T KOG3881|consen  125 -GNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV  203 (412)
T ss_pred             -CcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence             899999987542    344444456677777777655555 2   3  4689999998765544332211         


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (403)
                      +++.+.|-+......+++ +..-+.+++||.+.+  ++..+.-...+++++...|+|+++++|..-+. +..||++.++.
T Consensus       204 W~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl  281 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKL  281 (412)
T ss_pred             eeccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCcee
Confidence            234466666533333443 346799999999874  45666677889999999999999999999999 99999999998


Q ss_pred             EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       294 ~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~  340 (403)
                      +.....+ ..+.|++|..+|.+++|++++-|..|+|+|+++.+.+..
T Consensus       282 ~g~~~kg-~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  282 LGCGLKG-ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             eccccCC-ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            8773332 568999999999999999999999999999999775443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.57  E-value=1.5e-12  Score=120.37  Aligned_cols=206  Identities=11%  Similarity=0.073  Sum_probs=140.0

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  187 (403)
                      |.++|.+....   +.+. .+...+....|++++..++......  ....|++||+.+++......+...+..++|+||+
T Consensus       172 l~~~d~~g~~~---~~l~-~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       172 LQVADYDGANP---QTIT-RSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG  245 (417)
T ss_pred             EEEEcCCCCCC---EEee-cCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            66777654332   2232 3455678888999988776544320  0157999999988765544466667789999999


Q ss_pred             eEEE-e-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCce
Q 015650          188 IIVV-L-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (403)
Q Consensus       188 ~~~~-~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i  261 (403)
                      ..++ .     +..|++||+.+++.. .+..+........|+++++.+++...-.....|+++|+.++....+..+...+
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~  324 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN  324 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence            7665 2     236999999876543 33333334456788999887766542112346888888887777776666777


Q ss_pred             EEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          262 ACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      ..+.|+|+|++|+.++.++   . |.+||+.++... .+...   .......|+|||++|+..+.++
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCC
Confidence            8899999999999888765   6 899998876543 33321   2345678999999988877554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4.4e-12  Score=117.53  Aligned_cols=214  Identities=12%  Similarity=0.077  Sum_probs=138.2

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  187 (403)
                      |.++|.+.....   .+. .+...+....|+|++..++..+.+.  ....|++|++.+++........+.+....|+|||
T Consensus       181 l~~~d~~g~~~~---~l~-~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG  254 (430)
T PRK00178        181 LQRSDYDGARAV---TLL-QSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG  254 (430)
T ss_pred             EEEECCCCCCce---EEe-cCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC
Confidence            666666544322   222 3556788899999987765433220  0147999999888765433345556679999999


Q ss_pred             eEEE--e--cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCce
Q 015650          188 IIVV--L--EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (403)
Q Consensus       188 ~~~~--~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i  261 (403)
                      ..++  .  ++  .|++||+.+++.. .+..+........|+|+++.+++.+.......|+++++.++....+.......
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~  333 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN  333 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence            8776  2  33  6999999887643 34334444556789999988776642222346777888777665554333344


Q ss_pred             EEEEEcCCCCEEEEEeCC-C--cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-C--cEEEEEee
Q 015650          262 ACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-G--TVHVFNLK  333 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d-g--~v~iwd~~  333 (403)
                      ....|+|||++|+..+.+ +  . |.+||+.+++.. .+...   .......|+|||++|+..+.+ |  .|++++++
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            567899999999877653 2  4 888999887653 33321   122356899999998876643 3  35555654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.8e-12  Score=117.58  Aligned_cols=177  Identities=16%  Similarity=0.112  Sum_probs=118.2

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe----c--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      ..|.++|...............+....|+|||..++.    +  ..|++||+.+++... +...........|+|+++.+
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            3677788655544333347778899999999988772    2  269999998876432 22223334568999999987


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      +++........|+++|+.++....+..+.......+|+|||+.|+..+.. +. .|+++|+.+++......   ......
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~---~g~~~~  353 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF---EGEQNL  353 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec---CCCCCc
Confidence            66542222235888898888877777666667889999999988776542 32 27777887776543322   112334


Q ss_pred             EEEeCCCCCEEEEEeC-CCc--EEEEEeecCC
Q 015650          308 SLAFSSNAQWLAVSSD-KGT--VHVFNLKVNS  336 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~-dg~--v~iwd~~~~~  336 (403)
                      ...|+|||++|+..+. ++.  |.++|+.+++
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence            5789999999877654 444  4555666554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1.4e-13  Score=117.06  Aligned_cols=188  Identities=16%  Similarity=0.159  Sum_probs=139.9

Q ss_pred             EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        89 ~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      .+++|+.+|..|++|. |+.+|||++.......  ... .|...|-++.|++|+..+++-+.+      ..+||++.++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--~e~-~~~~eV~DL~FS~dgk~lasig~d------~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--EEI-AHHAEVKDLDFSPDGKFLASIGAD------SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh--hhH-hhcCccccceeCCCCcEEEEecCC------ceEEEEeccCc
Confidence            7899999999999998 5559999987665442  232 588899999999999999999886      78999999997


Q ss_pred             eeEEEe---cCCceeEEEEecCc-----eEEEe---cCeEEEEEcCCcee-----eeEeeccCCCceeEEEeeCCCeEEE
Q 015650          168 CIGELS---FRSEVRSVKLRRDR-----IIVVL---EQKIFVYNFADLKL-----LHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       168 ~~~~~~---~~~~i~~~~~~~~~-----~~~~~---d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      .+....   .......+.|..|+     ++++.   .+.|+.||+.....     .++.......+.+++++.+++.  +
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~  296 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--L  296 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--E
Confidence            777665   34556778888876     22221   34566666543221     1111122346789999999884  4


Q ss_pred             EeeCCccCeEEEEEccCCceeE--EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          232 VCPGLQKGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      +. |+.+|.|.|++...-+...  -+.|...|+.+.|+||.+++++.+.+.. ..|..+.
T Consensus       297 Al-GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~  354 (398)
T KOG0771|consen  297 AL-GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLA  354 (398)
T ss_pred             EE-eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEe
Confidence            43 4589999999988754433  3579999999999999999999888888 8887664

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=8.4e-14  Score=120.38  Aligned_cols=250  Identities=14%  Similarity=0.142  Sum_probs=179.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~  155 (403)
                      ..+..|.+.|+.+.|+..|..|++|+|+. |.+||+......  ..+..+|...+....|-|  +..-+++.+.|     
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d-----  208 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRD-----  208 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceecccc-----
Confidence            66889999999999999999999999665 999999887766  456567888888777765  45668888888     


Q ss_pred             ceEEEEECCCC-cee---EEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEe---eccCC---CceeEE
Q 015650          156 NKVMIWDDHQS-RCI---GELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI---ETIAN---PKGLCA  221 (403)
Q Consensus       156 ~~i~iwd~~~~-~~~---~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~---~~~~~---~~~~~~  221 (403)
                      |.+++=.+... ...   +..+|.++|.-++.-|+..+-+    .|+.+.-+|++.+.....+   +.+..   ....++
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            99998876443 322   2223999999999998765544    4889999999886443332   22222   334566


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccCCc-------eeEEe------ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-------TKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-------~~~~~------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~  288 (403)
                      +.|...+. +++ |..|..+++||.+.-.       +..+.      ...-.|++++|+.++.-|.++..|-. |++|.-
T Consensus       289 ~~P~nt~~-faV-gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~  365 (559)
T KOG1334|consen  289 VDPRNTNE-FAV-GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNK  365 (559)
T ss_pred             cCCCCccc-ccc-CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecc
Confidence            66655443 444 4589999999987621       12222      22346999999987777777777877 999953


Q ss_pred             CC--C----------cEEEE-EecCCCcccEEEEE-eCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          289 LD--G----------TLLQE-VRRGADRAEIYSLA-FSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       289 ~~--~----------~~~~~-~~~~~~~~~v~~l~-~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      ..  |          ..+.. +++|.....|..+- |-|...++++|++=|.|.||+-.+++.+
T Consensus       366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence            32  2          22222 56654445677775 4688899999999999999999988853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=7.7e-13  Score=107.41  Aligned_cols=137  Identities=17%  Similarity=0.216  Sum_probs=99.3

Q ss_pred             ceEEEEECC-CCceeEEEe--cCCceeEEEEecCceEEE-----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          156 NKVMIWDDH-QSRCIGELS--FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       156 ~~i~iwd~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      +...+|.++ .+..+..+.  ..++|.+++|+|++..++     .++.|.+||++ ++.+..+.  ......+.|+|+|+
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR  113 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence            345555542 234455554  456799999999988765     25689999996 66666664  45667899999999


Q ss_pred             eEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC------CCcEEEEEEcCCCcEEEEEe
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~------dg~~i~iwd~~~~~~~~~~~  298 (403)
                      .++++..|...|.|.+||.+..+......|. .++.++|+|||++|+++..      |.. ++||+. .|+.+....
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~-~G~~l~~~~  187 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSF-QGRLLYKKP  187 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceecccc-EEEEEe-cCeEeEecc
Confidence            7666654555689999999975554444444 4789999999999998864      667 999997 577665544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.54  E-value=3.3e-10  Score=101.41  Aligned_cols=261  Identities=14%  Similarity=0.094  Sum_probs=159.9

Q ss_pred             CcEEEEEc--CCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC--c--eeEEEe-cCCce
Q 015650          106 HGFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--R--CIGELS-FRSEV  178 (403)
Q Consensus       106 ~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~--~--~~~~~~-~~~~i  178 (403)
                      ++|.+|++  ++++......+.  .......+.+++++..|++..... ...+.|..|++...  +  .+.... .....
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p   89 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP   89 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred             CcEEEEEEcCCCCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence            46999988  344433333332  333444556666555444443310 01289999988764  2  233333 45566


Q ss_pred             eEEEEecCceEEE----ecCeEEEEEcCC-ceeeeE---ee----------ccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650          179 RSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQ---IE----------TIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       179 ~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      ..++++|++.+++    .+|.|.++++.. +.....   +.          ........+.++|+++.+++.--|  ...
T Consensus        90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~  167 (345)
T PF10282_consen   90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADR  167 (345)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTE
T ss_pred             EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCE
Confidence            7899999998877    388999999986 433222   21          012234578899999887766544  458


Q ss_pred             EEEEEccCCc--eeE---Ee-ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC--CCc--EEEEEecC---C-CcccE
Q 015650          241 VRVEHYASKR--TKF---IM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGT--LLQEVRRG---A-DRAEI  306 (403)
Q Consensus       241 i~v~d~~~~~--~~~---~~-~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~--~~~--~~~~~~~~---~-~~~~v  306 (403)
                      |.+|++....  +..   +. ........+.|+|++++++..++....|.++++.  +++  .+..+...   . .....
T Consensus       168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  247 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP  247 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred             EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence            9999987744  322   22 3455678999999999997776644339999987  443  22333211   1 11257


Q ss_pred             EEEEeCCCCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceE
Q 015650          307 YSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (403)
                      ..|+++|||++|+++. ..+.|.+|+++......                               ..+..+.........
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-------------------------------~~~~~~~~~G~~Pr~  296 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-------------------------------TLVQTVPTGGKFPRH  296 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-------------------------------EEEEEEEESSSSEEE
T ss_pred             eeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-------------------------------EEEEEEeCCCCCccE
Confidence            8999999999987765 67789999996443100                               012223333445888


Q ss_pred             EEeccCCCEEEEEccCC
Q 015650          386 VAFGHQKNTVVILGMDG  402 (403)
Q Consensus       386 ~~fs~d~~~l~~~~~dG  402 (403)
                      ++|+|+|++|++++.++
T Consensus       297 ~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  297 FAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             EEE-TTSSEEEEEETTT
T ss_pred             EEEeCCCCEEEEEecCC
Confidence            99999999999998664

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1.6e-10  Score=97.22  Aligned_cols=249  Identities=15%  Similarity=0.151  Sum_probs=171.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEc----CCcEEEEEcCCC--eeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGT----DHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~----~~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      ...+.+.++-|+|+|++++|.++.    +++|..|.++..  ...+..... .....-..++.++++.+++++...    
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~----  109 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYH----  109 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEcc----
Confidence            344667789999999999887775    234989988763  333322222 122233677888888777776532    


Q ss_pred             CceEEEEECCC-Cc---eeEEEecCCc----------eeEEEEecCceEEE-e---cCeEEEEEcCCceeeeE----eec
Q 015650          155 LNKVMIWDDHQ-SR---CIGELSFRSE----------VRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQ----IET  212 (403)
Q Consensus       155 ~~~i~iwd~~~-~~---~~~~~~~~~~----------i~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~----~~~  212 (403)
                      .|.|.++-+.. |.   .+..+.|.+.          +....+.|++++++ .   -..|.+|++..|++...    ++ 
T Consensus       110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-  188 (346)
T COG2706         110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-  188 (346)
T ss_pred             CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-
Confidence            48999999865 43   3344456655          88899999998888 2   46899999998764322    22 


Q ss_pred             cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeec---------CCceEEEEEcCCCCEEEEEeCCCc
Q 015650          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAH---------DSRIACFALTQDGQLLATSSTKGT  281 (403)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~---------~~~i~~~~~sp~g~~l~s~~~dg~  281 (403)
                      ....-+.+.|+|+++-.|+++  .-+++|.+|....  ++...++.+         ..+...|.+++||++|+++..--.
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d  266 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD  266 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence            233347899999999888876  6789999999887  455444322         346778999999999988765332


Q ss_pred             EEEEEEcCCC-cEEEEEe-cCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCC
Q 015650          282 LVRIFNTLDG-TLLQEVR-RGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSG  337 (403)
Q Consensus       282 ~i~iwd~~~~-~~~~~~~-~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~  337 (403)
                      .|.+|.+... ..+..+. ...+...-+...|+++|++|+++. ++..|.+|.++....
T Consensus       267 sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG  325 (346)
T COG2706         267 SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG  325 (346)
T ss_pred             eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence            2888877532 2232222 122334478999999999998887 445699999887663

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.54  E-value=8.1e-13  Score=109.62  Aligned_cols=245  Identities=12%  Similarity=0.217  Sum_probs=159.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee---EEEEeccc-----------CcceeEEEEeeeCC--eEEEee
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---IFRRDFER-----------GGGIGVVEMLFRCN--ILALVG  146 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~---~~~~~~~~-----------~~~~~v~~~~~~~~--~~~~~s  146 (403)
                      ..+-|.++.|..+|.+||+|+.+| |.+|.-+....   .+...++.           .-...|..+.|..+  ...+..
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            456789999999999999999777 88886542221   11122210           02235556666543  223333


Q ss_pred             CCCCCCCCCceEEEEECCCCc-----------------------------------eeEEEe--cCCceeEEEEecCceE
Q 015650          147 GGPDPQYPLNKVMIWDDHQSR-----------------------------------CIGELS--FRSEVRSVKLRRDRII  189 (403)
Q Consensus       147 ~~~d~~~~~~~i~iwd~~~~~-----------------------------------~~~~~~--~~~~i~~~~~~~~~~~  189 (403)
                      ...|     .+|++|.+....                                   +.+.+.  |...|.++.++.|+..
T Consensus       104 stNd-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen  104 STND-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             ecCC-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            3444     899999864321                                   122333  6677899999999887


Q ss_pred             EE-e-cCeEEEEEcCCc-eeeeEeec-------cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----eEE
Q 015650          190 VV-L-EQKIFVYNFADL-KLLHQIET-------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFI  254 (403)
Q Consensus       190 ~~-~-d~~i~i~d~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----~~~  254 (403)
                      +. . |=.|.+|+++-- +....+..       ...-|+...|+|....+++.+  +..|.|++-|++...+     +.+
T Consensus       179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS--SSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS--SSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe--cCCCcEEEeechhhhhhcchhhhh
Confidence            77 3 558999998742 22222211       123456778888877765554  4689999999995221     111


Q ss_pred             ------------eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCC----------ccc---EEE
Q 015650          255 ------------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGAD----------RAE---IYS  308 (403)
Q Consensus       255 ------------~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~----------~~~---v~~  308 (403)
                                  ..--..|..+.|+.+|+|+++-..- + |++||+. ..+++.++..+.+          ...   -..
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe  334 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE  334 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence                        1122468899999999999876554 4 9999994 5566666654211          012   235


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ++|+-++.++++|+....+++|++..+..
T Consensus       335 c~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  335 CSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             EEEcCCcceEecccccceEEEecCCCCcc
Confidence            78999999999999999999999777664

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.7e-12  Score=117.00  Aligned_cols=214  Identities=13%  Similarity=0.063  Sum_probs=134.3

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  187 (403)
                      |.++|.+.....   .+. .....+....|+||+..++....+.  ....|++||+.+++...............|+|||
T Consensus       200 l~i~d~dG~~~~---~l~-~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG  273 (448)
T PRK04792        200 LMIADYDGYNEQ---MLL-RSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG  273 (448)
T ss_pred             EEEEeCCCCCce---Eee-cCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence            556666544332   222 2456778889999987666543210  0146999999888754333334445678999999


Q ss_pred             eEEE-e---cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCce
Q 015650          188 IIVV-L---EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (403)
Q Consensus       188 ~~~~-~---d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i  261 (403)
                      ..++ .   ++  .|+++|+.+++.. .+..+........|+|+++.+++.+.......|+++|+.+++...+.......
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~  352 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN  352 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence            8776 2   44  4888898877543 34334444567889999988766642222345777788777766554333334


Q ss_pred             EEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCc--EEEEEe
Q 015650          262 ACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGT--VHVFNL  332 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~-dg~--v~iwd~  332 (403)
                      ...+|+|||++|+..+.+ +. .|.++|+.+++.. .+...   .......|+|||++|+..+. +|.  ++++++
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            567899999999876653 32 1666788877653 33321   12234589999998876653 443  566665

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.53  E-value=2.2e-12  Score=106.09  Aligned_cols=235  Identities=14%  Similarity=0.093  Sum_probs=164.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCe-eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      .-..+|+|.+|++|+..+|++..+. |.||.....+ -....++. .|...++.+.|.+....+++++.|     ..-++
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d-----rnayV   81 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD-----RNAYV   81 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCC-----CCccc
Confidence            3457899999999999999998664 9999987666 44446776 799999999999999999999999     89999


Q ss_pred             EEC-CCCc--eeE-EEecCCceeEEEEecCceEEEe---cCeEEEEEcCCcee----eeEeeccCCCceeEEEeeCCCeE
Q 015650          161 WDD-HQSR--CIG-ELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL----LHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       161 wd~-~~~~--~~~-~~~~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      |.. ..++  +.. .+++....+++.|+|....++.   ...|.+|-++....    .+.-+.+...|.++.|+|++  .
T Consensus        82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn--V  159 (361)
T KOG1523|consen   82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN--V  159 (361)
T ss_pred             cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc--c
Confidence            998 4443  222 3348999999999998877772   44677776654221    11112334555666666654  3


Q ss_pred             EEEeeCCccCeEEEEEc-----cCCc--------------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650          230 VLVCPGLQKGQVRVEHY-----ASKR--------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~-----~~~~--------------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (403)
                      +++ +|+.|+..+||..     +.+.              +.......+.+..+.|+|+|..|+-.+.|+. +.+-|...
T Consensus       160 Lla-aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~  237 (361)
T KOG1523|consen  160 LLA-AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAG  237 (361)
T ss_pred             eec-ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCC
Confidence            444 5779999999863     2211              1122345678999999999999999999999 99998765


Q ss_pred             Cc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 015650          291 GT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (403)
Q Consensus       291 ~~-~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw  330 (403)
                      .. .+..+..  ..-+..++.|-.+... +.++.|..=.++
T Consensus       238 p~~~v~~~~~--~~lP~ls~~~ise~~v-v~ag~~c~P~lf  275 (361)
T KOG1523|consen  238 PSERVQSVAT--AQLPLLSVSWISENSV-VAAGYDCGPVLF  275 (361)
T ss_pred             Cchhccchhh--ccCCceeeEeecCCce-eecCCCCCceEE
Confidence            54 3333332  2257778888665443 334444333333

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.2e-11  Score=113.47  Aligned_cols=216  Identities=11%  Similarity=0.078  Sum_probs=134.9

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEE--E-eeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEe
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA--L-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR  184 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~-~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~  184 (403)
                      |.+.|.+.....   .+. ........-.|+||+..  + +....+.   ...|++.++..++..+............|+
T Consensus       167 l~~~d~dG~~~~---~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g---~~~I~~~~l~~g~~~~lt~~~g~~~~p~wS  239 (428)
T PRK01029        167 LWSVDYDGQNLR---PLT-QEHSLSITPTWMHIGSGFPYLYVSYKLG---VPKIFLGSLENPAGKKILALQGNQLMPTFS  239 (428)
T ss_pred             EEEEcCCCCCce---Ecc-cCCCCcccceEccCCCceEEEEEEccCC---CceEEEEECCCCCceEeecCCCCccceEEC
Confidence            555555544332   233 23445677889999642  3 2222220   157888899888755544456666778999


Q ss_pred             cCceEEE--ec--C--e--EEEEEcCCc---eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe--EEEEEccC--C
Q 015650          185 RDRIIVV--LE--Q--K--IFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYAS--K  249 (403)
Q Consensus       185 ~~~~~~~--~d--~--~--i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~--i~v~d~~~--~  249 (403)
                      |||+.++  .+  |  .  +.+|++..+   +..+............+|+|+++.+++++  ..+|.  |.++++..  +
T Consensus       240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~  317 (428)
T PRK01029        240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQ  317 (428)
T ss_pred             CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECccccc
Confidence            9998777  22  2  3  444676653   32333322223345679999999877664  23454  44445432  3


Q ss_pred             ceeEEeecCCceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC---
Q 015650          250 RTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---  323 (403)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~---  323 (403)
                      ....+..+...+....|+|||++|+..+.+   .. |++||+.+++......   ....+....|+|||++|+....   
T Consensus       318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~-I~v~dl~~g~~~~Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g  393 (428)
T PRK01029        318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ-ICVYDLATGRDYQLTT---SPENKESPSWAIDSLHLVYSAGNSN  393 (428)
T ss_pred             ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcE-EEEEECCCCCeEEccC---CCCCccceEECCCCCEEEEEECCCC
Confidence            345555555677889999999999876543   35 9999998887654332   2245678999999998875442   


Q ss_pred             CCcEEEEEeecCC
Q 015650          324 KGTVHVFNLKVNS  336 (403)
Q Consensus       324 dg~v~iwd~~~~~  336 (403)
                      ...|++||++.++
T Consensus       394 ~~~L~~vdl~~g~  406 (428)
T PRK01029        394 ESELYLISLITKK  406 (428)
T ss_pred             CceEEEEECCCCC
Confidence            3468888887765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=6.5e-13  Score=116.32  Aligned_cols=189  Identities=12%  Similarity=0.133  Sum_probs=124.9

Q ss_pred             ceeEEEEeeeC--CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEecCeEEEEEcCCcee
Q 015650          129 GIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKL  206 (403)
Q Consensus       129 ~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~  206 (403)
                      ...++++.|-+  +..++++-..      |.++++|..-       .....-.+-...+++..+...-.....   +..+
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~s------Gnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~ksk~---~rNP  282 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHAS------GNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSKSKK---TRNP  282 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEec------CceEEeeccc-------cccCCCCcccccCCCCeeEEeeeeccc---cCCc
Confidence            36778888765  4555555443      8899998511       100001111122333332211111111   1133


Q ss_pred             eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee-EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      +..+......+...+|++|+..+..+  + .||.++|||+.+.++. .++.--+...|++|||||+||++|++|.- |.|
T Consensus       283 v~~w~~~~g~in~f~FS~DG~~LA~V--S-qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtV  358 (636)
T KOG2394|consen  283 VARWHIGEGSINEFAFSPDGKYLATV--S-QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTV  358 (636)
T ss_pred             cceeEeccccccceeEcCCCceEEEE--e-cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcce-EEE
Confidence            33344445578889999988865444  3 9999999999986653 33445677999999999999999999999 999


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCC-------------------------------C----C-------------CE
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSS-------------------------------N----A-------------QW  317 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~-------------------------------d----~-------------~~  317 (403)
                      |.+..++.+..-.  .|.+.|..++|.|                               +    +             -.
T Consensus       359 wSf~erRVVARGq--GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YR  436 (636)
T KOG2394|consen  359 WSFEERRVVARGQ--GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYR  436 (636)
T ss_pred             EEeccceEEEecc--ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEE
Confidence            9999888876555  4889999999982                               0    1             14


Q ss_pred             EEEEeCCCcEEEEEeecCCCCC
Q 015650          318 LAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       318 l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      |.+.+.|-.+.+||+......+
T Consensus       437 fGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  437 FGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             eecccccceEEEEecchhhccc
Confidence            6778899999999998766544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.50  E-value=2.3e-11  Score=108.78  Aligned_cols=235  Identities=13%  Similarity=0.145  Sum_probs=146.5

Q ss_pred             EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        89 ~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      ..+.|+|||+++.+.+ |+.|.++|+.+.+..  .++.  -......+++++++.+++.+...    ++.+.++|.++.+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--~~i~--~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle  111 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--ATIK--VGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE  111 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--EEEE---SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEE--EEEe--cCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence            4477999999988777 555999999988855  5555  34456788899998777765432    2899999999999


Q ss_pred             eeEEEe-c-------CCceeEEEEecCce-EEE-e--cCeEEEEEcCCceee--eEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          168 CIGELS-F-------RSEVRSVKLRRDRI-IVV-L--EQKIFVYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       168 ~~~~~~-~-------~~~i~~~~~~~~~~-~~~-~--d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      .++.+. .       ...+..+..++.+. +++ .  .+.|.+.|..+.+.+  ..+. .........++++++.++++.
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEE
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeecc
Confidence            999886 1       23567788788766 444 2  478888887765433  2332 233445678888887766554


Q ss_pred             eCCccCeEEEEEccCCcee--------------------------------------------------------EEeec
Q 015650          234 PGLQKGQVRVEHYASKRTK--------------------------------------------------------FIMAH  257 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~~--------------------------------------------------------~~~~~  257 (403)
                        .....|-++|..++...                                                        .+...
T Consensus       191 --~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  191 --NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             --GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             --cccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence              24457777776653221                                                        11111


Q ss_pred             CCceEEEEEcCCCCEEEEE----eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe--CCCcEEEEE
Q 015650          258 DSRIACFALTQDGQLLATS----STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFN  331 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~----~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--~dg~v~iwd  331 (403)
                      ... .-+..+|++++++..    ...+. |.|+|.++.+.+..+.... ...+..+.|++||+++..+.  .++.|.+||
T Consensus       269 G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  269 GGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             SSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             CCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence            112 345668999999987    33466 9999999998888876421 13499999999999765554  344799999


Q ss_pred             eecCCC
Q 015650          332 LKVNSG  337 (403)
Q Consensus       332 ~~~~~~  337 (403)
                      ..+.+.
T Consensus       346 ~~Tl~~  351 (369)
T PF02239_consen  346 AKTLKE  351 (369)
T ss_dssp             TTTTEE
T ss_pred             CCCcEE
Confidence            999885

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=7.6e-11  Score=97.11  Aligned_cols=212  Identities=15%  Similarity=0.174  Sum_probs=148.5

Q ss_pred             cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC-CCceeEEEe---cCCceeEEE
Q 015650          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELS---FRSEVRSVK  182 (403)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~-~~~~~~~~~---~~~~i~~~~  182 (403)
                      .|.|||=....++  .++.  -...|.++.+..+.+.++..        +.|+||... +-+.++.+.   .+..+.+++
T Consensus        76 kviIWDD~k~~~i--~el~--f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   76 KVIIWDDLKERCI--IELS--FNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             eEEEEecccCcEE--EEEE--eccceeeEEEcCCeEEEEec--------CeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            4999994333333  4453  56889999999998888776        689999987 446677666   244444444


Q ss_pred             EecCceEEEe----cCeEEEEEcCCcee--eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEe
Q 015650          183 LRRDRIIVVL----EQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM  255 (403)
Q Consensus       183 ~~~~~~~~~~----d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~  255 (403)
                      -..+..+++.    -|.|.|-|+...+.  ...+..|...|.+++++.+|.  .+|+++...-.|+|||..++.. ..+.
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~l~E~R  221 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTLLQELR  221 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcEeeeee
Confidence            4445666662    58999999987554  467889999999999999887  5666554555699999988554 4443


Q ss_pred             e--cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE------------------------EEecCCCcccEEEE
Q 015650          256 A--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ------------------------EVRRGADRAEIYSL  309 (403)
Q Consensus       256 ~--~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~------------------------~~~~~~~~~~v~~l  309 (403)
                      .  ....|.+|+|||++.+||++|..|+ |.||.++....-.                        .+..  ..+...-+
T Consensus       222 RG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l--~~~~~~~~  298 (346)
T KOG2111|consen  222 RGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQL--PQGTQCII  298 (346)
T ss_pred             cCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccceeEEEEEc--cCCCcEEE
Confidence            2  3457999999999999999999999 9999886532111                        1111  12345556


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      +|-.+.+.++..+.||.-+-+.+...
T Consensus       299 ~fg~~~nsvi~i~~Dgsy~k~~f~~~  324 (346)
T KOG2111|consen  299 AFGSETNTVIAICADGSYYKFKFDPK  324 (346)
T ss_pred             EecCCCCeEEEEEeCCcEEEEEeccc
Confidence            77777556666667887766655443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.48  E-value=2.8e-11  Score=105.71  Aligned_cols=242  Identities=13%  Similarity=0.095  Sum_probs=166.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC----------
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY----------  153 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~----------  153 (403)
                      ..-++..+.|||.|.+|++....+|.+|.-.....+  ..+   ....+..+.|+|++.+|++-.+.+.-          
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRF---RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhhe--eee---ecCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence            455788899999999999999999999997766633  334   23468889999999999998877551          


Q ss_pred             CCceEEEEECCCCceeEEEe-cCCc--ee-EEEEecCceEEE--ecCeEEEEEcCCceee-eEeecc-CCCceeEEEeeC
Q 015650          154 PLNKVMIWDDHQSRCIGELS-FRSE--VR-SVKLRRDRIIVV--LEQKIFVYNFADLKLL-HQIETI-ANPKGLCAVSQG  225 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~-~~~~--i~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~-~~~~~~-~~~~~~~~~~~~  225 (403)
                      ..+.+.+||+.+|..+..+. ...+  .. -+.|+-+..+++  ....++|+++ ++... ..+... ...+....++|.
T Consensus       106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence            12469999999999999987 2222  34 688999998888  6889999997 43221 111111 245566777877


Q ss_pred             CCeEEEEe----eCCccCeEEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeC-----------CCcEEEEEEcC
Q 015650          226 VGSLVLVC----PGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-----------KGTLVRIFNTL  289 (403)
Q Consensus       226 ~~~~~~~~----~g~~d~~i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~-----------dg~~i~iwd~~  289 (403)
                      +++--+++    .+...+.+++|.+..+...... -....-..+.|.+.|++|+.--.           ... ++|+++.
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~  263 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRIT  263 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeec
Confidence            55443333    2346788999998764432221 11222346788888888764211           234 8889887


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe--CCCcEEEEEeecC
Q 015650          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVN  335 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--~dg~v~iwd~~~~  335 (403)
                      ...+.....   ..++|...+|.|+++.+++.+  .+-.+.++|++..
T Consensus       264 e~~i~V~~~---~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         264 ERSIPVEKD---LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ccccceecc---ccccceeeeecccCCceeEEecccccceeecccccc
Confidence            443332322   357999999999999876654  7778888888765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.47  E-value=2.8e-11  Score=115.99  Aligned_cols=253  Identities=11%  Similarity=0.097  Sum_probs=163.7

Q ss_pred             CCccccCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEcCCCee---E--EEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFRE---I--FRRDFERGGGIGVVEMLFRCNILALVGGG  148 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~-~~l~~~~~~~-i~iw~~~~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (403)
                      .....+..|...|..++.+++. .++++|+++| |++|+......   .  ...++. -....+..+...+++..++.++
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEc
Confidence            3446678899999999987655 9999999666 99999853211   1  112221 1345566666666677777778


Q ss_pred             CCCCCCCceEEEEECCCCc-------eeEEEe--cCCceeEE-EEec-Cce-EEE---ecCeEEEEEcCCceeeeEee--
Q 015650          149 PDPQYPLNKVMIWDDHQSR-------CIGELS--FRSEVRSV-KLRR-DRI-IVV---LEQKIFVYNFADLKLLHQIE--  211 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~-------~~~~~~--~~~~i~~~-~~~~-~~~-~~~---~d~~i~i~d~~~~~~~~~~~--  211 (403)
                      .|     |.|.+.++...+       ..+...  ..+.+.++ ++.. ++. .++   ..+.|..||++.......++  
T Consensus      1118 ~D-----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1118 KD-----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             CC-----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            88     999999987621       111111  23344433 2322 122 233   36789999998865555443  


Q ss_pred             ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE--eecCCceEEEEEcC---CCCEEEEEeC--CCcEEE
Q 015650          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQ---DGQLLATSST--KGTLVR  284 (403)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~--~~~~~~i~~~~~sp---~g~~l~s~~~--dg~~i~  284 (403)
                      ...+.++.+++++.+..+++   |...|.+.+||++-+....-  .++..+|..+..+|   .....++++.  .+. |.
T Consensus      1193 ~~hG~vTSi~idp~~~Wlvi---Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs 1268 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVI---GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VS 1268 (1431)
T ss_pred             ccccceeEEEecCCceEEEE---ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-ee
Confidence            23466788999998874443   45779999999998664332  34557788877776   3345555544  445 99


Q ss_pred             EEEcCCCcEEEEEecC-----------------CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          285 IFNTLDGTLLQEVRRG-----------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       285 iwd~~~~~~~~~~~~~-----------------~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      +|++.+|.+...+...                 .+.-......+..-+..+.+|+.|..|+.||....+.-
T Consensus      1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            9999999877766542                 01111222334444568889999999999999988754

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=3.9e-11  Score=105.84  Aligned_cols=271  Identities=16%  Similarity=0.176  Sum_probs=173.3

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC------CCceEEEE
Q 015650           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY------PLNKVMIW  161 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~------~~~~i~iw  161 (403)
                      =+.+.|||-|.||++-...||.+|--......  +.+.  | ..+.-+.|+|+..+|++-+..+.-      ....++||
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~--~RF~--H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRI--QRFY--H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccHHHH--Hhcc--C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence            36789999999999999999999965444433  4443  3 457788899999999987754332      23689999


Q ss_pred             ECCCCceeEEEe-c--CCc-eeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          162 DDHQSRCIGELS-F--RSE-VRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       162 d~~~~~~~~~~~-~--~~~-i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      |+.+|...+.+. .  ... -.-+.|+.|+++++  ..+.|.||+.....++..-......|....|+|.+.-+...+.-
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence            999999988887 2  222 23568999999999  57899999977644433322334566777888876533322211


Q ss_pred             C--ccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeC----------CCcEEEEEEcCCCcE-EEEEecCC
Q 015650          236 L--QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSST----------KGTLVRIFNTLDGTL-LQEVRRGA  301 (403)
Q Consensus       236 ~--~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~----------dg~~i~iwd~~~~~~-~~~~~~~~  301 (403)
                      .  .-..+.+..+..++ ++...-+.-.=..+-|-.+|.+|+.--.          -.. +.|+.++.... +..+.   
T Consensus       368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve---  443 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE---  443 (698)
T ss_pred             ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee---
Confidence            1  11234444444432 2222223222234556677888874221          112 66776655432 33333   


Q ss_pred             CcccEEEEEeCCCCCEEEEEe---CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE
Q 015650          302 DRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL  378 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (403)
                      -...|...+|-|.|..+++-+   ...++.+|.+++......+                     +            ..+
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l---------------------V------------k~~  490 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL---------------------V------------KEL  490 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh---------------------h------------hhh
Confidence            346899999999999887665   3457999999863321111                     1            223


Q ss_pred             eCCCceEEEeccCCCEEEEEcc
Q 015650          379 VEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       379 ~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                      .....+.|-|+|.|+++++++.
T Consensus       491 dk~~~N~vfwsPkG~fvvva~l  512 (698)
T KOG2314|consen  491 DKKFANTVFWSPKGRFVVVAAL  512 (698)
T ss_pred             cccccceEEEcCCCcEEEEEEe
Confidence            3346677999999999998864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=1.2e-11  Score=104.43  Aligned_cols=239  Identities=12%  Similarity=0.067  Sum_probs=167.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      -..|...|.|++|....+.|.+|. +++|.+.|+++.+.+....-. .....|..+..+|....+++..++     +.|.
T Consensus       101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t~~-----~~V~  174 (609)
T KOG4227|consen  101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVTRA-----KLVS  174 (609)
T ss_pred             cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEecC-----ceEE
Confidence            345678999999999999999998 455999999988776443222 334589999999987778888887     9999


Q ss_pred             EEECCCCc-ee---EEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCcee-eeE------eeccCCCceeEEEee
Q 015650          160 IWDDHQSR-CI---GELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL-LHQ------IETIANPKGLCAVSQ  224 (403)
Q Consensus       160 iwd~~~~~-~~---~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~-~~~------~~~~~~~~~~~~~~~  224 (403)
                      +||.+... .+   ..-........+.|+|....++    ..+-+.+||++..+. +..      +......-....|++
T Consensus       175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~  254 (609)
T KOG4227|consen  175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP  254 (609)
T ss_pred             EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence            99987764 22   2222567788899999754333    366799999876421 111      111111124578899


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccCCceeEEee-cC-------CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-----
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HD-------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-----  291 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-~~-------~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-----  291 (403)
                      .+.+++.+-   ....-.+||+-.+++..++. |.       ..+.+++|.-|-. +++|+.+-. |++|.+...     
T Consensus       255 ~G~Q~msiR---R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~-i~~WklP~~~ds~G  329 (609)
T KOG4227|consen  255 SGNQFMSIR---RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG-IHIWKLPRANDSYG  329 (609)
T ss_pred             CCCeehhhh---ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccc-eEEEecCCCccccC
Confidence            888765442   33445678888766555542 32       2466788875554 889999988 999987421     


Q ss_pred             ------------------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          292 ------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       292 ------------------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                                        +.+..+++  |...++.+.|+|...+|++.+-.+.++||.-
T Consensus       330 ~~~IG~~~~~~~~~~~i~~~~~VLrG--HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  330 FTQIGHDEEEMPSEIFIEKELTVLRG--HRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ccccCcchhhCchhheecceeEEEec--ccccccceeecCCcceEeccchhhheecccc
Confidence                              12334554  7789999999999999999999999999964

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=4.8e-11  Score=109.47  Aligned_cols=224  Identities=8%  Similarity=-0.073  Sum_probs=138.7

Q ss_pred             CCCCeEEEEEcCCCCE--EE-EEcCC-c--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           84 PPPTLLHISFNQDHGC--FA-AGTDH-G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~--l~-~~~~~-~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ....+..-+|+|||+.  ++ +...+ .  |.+.++++++......+.    .......|+||+..++.........+-.
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~----g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ----GNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC----CCccceEECCCCCEEEEEECCCCCccee
Confidence            4455667799999975  32 33322 2  888888777655433343    2334578999986655432210011133


Q ss_pred             EEEEECCCC---ceeEEEec-CCceeEEEEecCceEEE--e--cC--eEEEEEcCC-ceeeeEeeccCCCceeEEEeeCC
Q 015650          158 VMIWDDHQS---RCIGELSF-RSEVRSVKLRRDRIIVV--L--EQ--KIFVYNFAD-LKLLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       158 i~iwd~~~~---~~~~~~~~-~~~i~~~~~~~~~~~~~--~--d~--~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~  226 (403)
                      +.+|++..+   +..+.... .......+|+|||..++  .  ++  .|+++++.. +.....+......+....|+|++
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            445776653   33333322 23446789999998776  2  34  455556542 23334444444556778999999


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCcEEEEEecCCCc
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                      +.++++........|.+||+.++....+......+....|+|||+.|+....   ... |+++|+..++......   ..
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~---~~  414 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI---GS  414 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec---CC
Confidence            9776654222235799999999887777655556788999999998875443   235 8899998877655444   23


Q ss_pred             ccEEEEEeCCCC
Q 015650          304 AEIYSLAFSSNA  315 (403)
Q Consensus       304 ~~v~~l~~s~d~  315 (403)
                      +.+...+|+|-.
T Consensus       415 g~~~~p~Ws~~~  426 (428)
T PRK01029        415 GEKRFPSWGAFP  426 (428)
T ss_pred             CcccCceecCCC
Confidence            456778888753

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=3.7e-11  Score=106.15  Aligned_cols=232  Identities=11%  Similarity=0.170  Sum_probs=161.7

Q ss_pred             EEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC--e--EEEeeCCCCCCCCCceEEEEECC
Q 015650           89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--I--LALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        89 ~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~--~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      ++..|++|..+.|--..+.+.+|+....+... ..+   |...+..+.+++.  -  .++..-..+  -.+..|+||...
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl---~~~~i~~f~lSpgp~~~~vAvyvPe~k--GaPa~vri~~~~  202 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKL---SVSGITMLSLSPGPEPPFVAVYVPEKK--GAPASVRIYKYP  202 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCcccee-eee---eccceeeEEecCCCCCceEEEEccCCC--CCCcEEEEeccc
Confidence            68899999887766667779999987754432 334   4566777777664  2  222222221  123789999876


Q ss_pred             CCceeEEE---e-cCCceeEEEEecCceEEE------e---------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeC
Q 015650          165 QSRCIGEL---S-FRSEVRSVKLRRDRIIVV------L---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (403)
Q Consensus       165 ~~~~~~~~---~-~~~~i~~~~~~~~~~~~~------~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  225 (403)
                      ....-..+   . +...=..+.|++-|.-+.      .         +.+++++++....+...+ ...++|..+.|+++
T Consensus       203 ~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s  281 (566)
T KOG2315|consen  203 EEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPS  281 (566)
T ss_pred             cccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCC
Confidence            33221111   1 333444677887554322      1         347999998744444333 34789999999999


Q ss_pred             CCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCcEEEEEecCCC
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGAD  302 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~  302 (403)
                      +..+.++. |-.-..+.+||++...+..+.  .++=+++-|+|.|++|+.++-   .|. |.|||+.+.+++..+..   
T Consensus       282 ~~EF~Vvy-GfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a---  354 (566)
T KOG2315|consen  282 GREFAVVY-GFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKA---  354 (566)
T ss_pred             CCEEEEEE-ecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhcccccc---
Confidence            98876665 777889999999987766553  556678999999999988775   467 99999999999888874   


Q ss_pred             cccEEEEEeCCCCCEEEEEe------CCCcEEEEEeecC
Q 015650          303 RAEIYSLAFSSNAQWLAVSS------DKGTVHVFNLKVN  335 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~------~dg~v~iwd~~~~  335 (403)
                       ..-+-+.|+|||++|+|++      .|+.++||++.-.
T Consensus       355 -~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  355 -ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             -CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence             3456689999999999886      3788999998643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=2.1e-10  Score=104.60  Aligned_cols=173  Identities=12%  Similarity=0.054  Sum_probs=117.2

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceE-EE---e---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII-VV---L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      ..|.+-|.... ..+.+.....+....|+|||.. ++   .   +..|+++|+.+++...... ..+......|+||++.
T Consensus       169 ~~l~~~d~dg~-~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLT-YQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCC-ceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            46777675433 3444443347788999999974 44   1   3469999998886554433 3444556789999998


Q ss_pred             EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-C--cEEEEEEcCCCcEEEEEecCCCccc
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      +++......+..|.++|+.++....+..+........|+|||+.|+..+.. +  . |++.|+.+++..+....+   . 
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~-Iy~~dl~~g~~~rlt~~g---~-  321 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN-IFMKKLNSGSVEQVVFHG---K-  321 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCce-EEEEECCCCCeEeCccCC---C-
Confidence            877664334577888898888777776555444566899999988776643 2  4 888898887764443321   1 


Q ss_pred             EEEEEeCCCCCEEEEEeCC---------CcEEEEEeecCC
Q 015650          306 IYSLAFSSNAQWLAVSSDK---------GTVHVFNLKVNS  336 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~d---------g~v~iwd~~~~~  336 (403)
                       ....|+|||++|+..+..         ..|++.|+++++
T Consensus       322 -~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        322 -NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             -cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence             124899999998876643         257777776665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.43  E-value=1.1e-09  Score=95.85  Aligned_cols=236  Identities=12%  Similarity=0.052  Sum_probs=151.6

Q ss_pred             EcCCCCEEEEEcC-----------CcEEEEEcCCCeeEEEEecccC----cceeEEEEeeeCCeEEEeeCC-C-CCCCCC
Q 015650           93 FNQDHGCFAAGTD-----------HGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGG-P-DPQYPL  155 (403)
Q Consensus        93 ~s~d~~~l~~~~~-----------~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~s~~-~-d~~~~~  155 (403)
                      ++|||+.|.++..           +.|.+||..+.+......+...    ....-..+.+++++..++... . +     
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~-----  127 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS-----  127 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC-----
Confidence            9999998876654           3499999999887744443211    012334677888887666443 2 4     


Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCC-ceee-eE---eeccCCCce-eEEEee-CCC
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLL-HQ---IETIANPKG-LCAVSQ-GVG  227 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~-~~---~~~~~~~~~-~~~~~~-~~~  227 (403)
                      ..|.+.|+.+++.+.++.-.....-...+++...+. .||......+.+ ++.. ..   +.....++. .-.+.+ ++.
T Consensus       128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~  207 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR  207 (352)
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence            899999999999999998555444444444444333 566655544433 2211 11   111000000 003455 554


Q ss_pred             eEEEEeeCCccCeEEEEEccCCceeE------Ee-------ecCCceEEEEEcCCCCEEEEEeC----------CCcEEE
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTKF------IM-------AHDSRIACFALTQDGQLLATSST----------KGTLVR  284 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~~------~~-------~~~~~i~~~~~sp~g~~l~s~~~----------dg~~i~  284 (403)
                      .+ +++   ..|.|.+.|+.......      +.       -..+.+.-+++++++++|+....          .+. |.
T Consensus       208 ~~-~vs---~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~  282 (352)
T TIGR02658       208 LV-WPT---YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LF  282 (352)
T ss_pred             EE-EEe---cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EE
Confidence            44 443   33999999975532211      11       12334455999999999887431          134 99


Q ss_pred             EEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEe-CCCcEEEEEeecCCCCCCC
Q 015650          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSARS  341 (403)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~-~dg~v~iwd~~~~~~~~~~  341 (403)
                      ++|..+++.+..+..+   ..+..|+++||++ +|++.. .++.|.++|+.+++...++
T Consensus       283 ViD~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       283 VVDAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9999999999999853   5899999999999 877666 6788999999999864443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=2.2e-09  Score=90.50  Aligned_cols=261  Identities=11%  Similarity=0.052  Sum_probs=166.4

Q ss_pred             CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC--CceeEEE--e-cCCcee
Q 015650          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--SRCIGEL--S-FRSEVR  179 (403)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~--~~~~~~~--~-~~~~i~  179 (403)
                      +.+|.+|++++....+............+-+.++++...|.++..+..  .|.|.-|.+..  |++...-  . ...+..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~--~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE--EGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC--cCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            456999999844332211111246667788889998865555433200  27777777764  4433222  2 334448


Q ss_pred             EEEEecCceEEE----ecCeEEEEEcCC-ceeeeE--eeccCCC----------ceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650          180 SVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQ--IETIANP----------KGLCAVSQGVGSLVLVCPGLQKGQVR  242 (403)
Q Consensus       180 ~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (403)
                      .+++++++++++    ..|.|.++-++. |.+...  +..|...          +....+.|+++.++...-|  --.|.
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG--~Dri~  170 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG--TDRIF  170 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC--CceEE
Confidence            899999998888    368999999865 432211  1122222          5667888988865544433  34789


Q ss_pred             EEEccCCceeEEe----ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCC-cEEEEEec------C-CCcccEEEE
Q 015650          243 VEHYASKRTKFIM----AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDG-TLLQEVRR------G-ADRAEIYSL  309 (403)
Q Consensus       243 v~d~~~~~~~~~~----~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~-~~~~~~~~------~-~~~~~v~~l  309 (403)
                      +|++..+.+....    .....-..|.|+|++++.+..++ +++ |.+|..... ..+..++.      . .......+|
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st-V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST-VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE-EEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence            9999876553322    33455789999999999887766 667 999998763 22222221      1 122467789


Q ss_pred             EeCCCCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC-CceEEE
Q 015650          310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-SPYIVA  387 (403)
Q Consensus       310 ~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  387 (403)
                      ..++||++|.++. ....|.+|.++.......                                +......++ ....+.
T Consensus       250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~--------------------------------~~~~~~teg~~PR~F~  297 (346)
T COG2706         250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLE--------------------------------LVGITPTEGQFPRDFN  297 (346)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcCCCCEEE--------------------------------EEEEeccCCcCCccce
Confidence            9999999998875 344788888877653111                                111222233 377789


Q ss_pred             eccCCCEEEEEccCC
Q 015650          388 FGHQKNTVVILGMDG  402 (403)
Q Consensus       388 fs~d~~~l~~~~~dG  402 (403)
                      |++.|++|+++.+|+
T Consensus       298 i~~~g~~Liaa~q~s  312 (346)
T COG2706         298 INPSGRFLIAANQKS  312 (346)
T ss_pred             eCCCCCEEEEEccCC
Confidence            999999999998876

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=1.4e-11  Score=116.14  Aligned_cols=187  Identities=13%  Similarity=0.147  Sum_probs=133.8

Q ss_pred             CceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCc-e-eEEEeeCCCeEEEEeeCCccCeEEEEEccCCc
Q 015650          176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK-G-LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~  250 (403)
                      ..|....+..+...++   .++.+.+||...+.....+....... . .+-+-...+.+++++ |+--+.|.+|+.....
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~-gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS-GSVFGEIIVWKPHEDN  166 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe-ccccccEEEEeccccC
Confidence            3344444444444444   58899999988776665554322211 1 122223445666665 6688999999987533


Q ss_pred             -eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650          251 -TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (403)
Q Consensus       251 -~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~i  329 (403)
                       ...+.+|++.|.++.++.||+++++.|.|.+ +++|++.+.+.....- -.|...|+.+.|.|+  .+++++.|.+.++
T Consensus       167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~-fgHsaRvw~~~~~~n--~i~t~gedctcrv  242 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTG-FGHSARVWACCFLPN--RIITVGEDCTCRV  242 (967)
T ss_pred             CcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccc-ccccceeEEEEeccc--eeEEeccceEEEE
Confidence             3358899999999999999999999999999 9999999988776221 238899999999998  9999999999999


Q ss_pred             EEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC-CCceEEEeccCCCEEEEEccCCC
Q 015650          330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      |+.+-.+..                                    .++.|. +.+..++.+++...+++++.||+
T Consensus       243 W~~~~~~l~------------------------------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~  281 (967)
T KOG0974|consen  243 WGVNGTQLE------------------------------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDST  281 (967)
T ss_pred             Eecccceeh------------------------------------hhhhhhhcceeEEEEcCCceEEEeeccCcc
Confidence            965544310                                    122222 36777888888888888888874

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=6.7e-12  Score=124.18  Aligned_cols=192  Identities=13%  Similarity=0.107  Sum_probs=150.1

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcC
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA  202 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~  202 (403)
                      +-..+.++.-+|...+.++++.|     |.+++|....++.+..+.  ....|+.+.|+.+|....   .||.+.+|...
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            44567777778888889999999     999999999999988887  568899999999887655   69999999976


Q ss_pred             CceeeeEeeccCCCceeEEEeeCCCeEEEEeeC--CccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeC
Q 015650          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSST  278 (403)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~  278 (403)
                       .+.....+.|......+.|-.  .  .++++|  ..++.+.+||...  ..-..-..|.+.++++++.|...+|++|+.
T Consensus      2282 -pk~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             -CcceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence             455555566666555555544  2  234333  4678999999655  222233789999999999999999999999


Q ss_pred             CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      +|. |++||++..+++.++..           +. ...++++|+..|.++||++.....+..+.
T Consensus      2357 ~G~-v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGE-VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             cCc-EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            999 99999998887766652           33 55689999999999999999987655543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=7.5e-11  Score=107.14  Aligned_cols=232  Identities=15%  Similarity=0.159  Sum_probs=164.9

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee-------------EEEEecccCcceeEEEEeeeCCeEEEe
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-------------IFRRDFERGGGIGVVEMLFRCNILALV  145 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~  145 (403)
                      +.........|+.|+.+..++|+|+.+| ++|..+++...             ...+++. +|+..|.-+.|+.+...+.
T Consensus         9 i~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLT   87 (1189)
T KOG2041|consen    9 IGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLT   87 (1189)
T ss_pred             cCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEecccccccc
Confidence            3344556789999999999999999666 89988754321             1224555 8999999999999999999


Q ss_pred             eCCCCCCCCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCcee
Q 015650          146 GGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGL  219 (403)
Q Consensus       146 s~~~d~~~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~  219 (403)
                      +++.+     |-|.+|-+-.|.-..++.   ..+-|.+++|+.||..++   .||.|.+=.+.. ..+.--+-.......
T Consensus        88 tSDt~-----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~h  161 (1189)
T KOG2041|consen   88 TSDTS-----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAH  161 (1189)
T ss_pred             ccCCC-----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcchheccc
Confidence            99998     999999998886554443   567899999999998776   588888776643 222221111223356


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccCCce--------eEE----eecCCceEEEEEc--------CCCCEEEEEeCC
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--------KFI----MAHDSRIACFALT--------QDGQLLATSSTK  279 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~--------~~~----~~~~~~i~~~~~s--------p~g~~l~s~~~d  279 (403)
                      +.|++|.+..++.   -.+|.+.+||....-.        ...    ......|-.+.|.        ||...|+.+-.+
T Consensus       162 v~ws~D~~~~Lf~---~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n  238 (1189)
T KOG2041|consen  162 VLWSEDLEQALFK---KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN  238 (1189)
T ss_pred             eeecccHHHHHhh---hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence            7888888765544   3679999999876211        111    1122235555554        578899999999


Q ss_pred             CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      |. +.|..-.+......+..   .-.|..+.|+++|..|++++.+.
T Consensus       239 Gr-~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  239 GR-MQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             ce-ehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcc
Confidence            98 88886555544445553   25789999999999999998654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=4.8e-11  Score=100.88  Aligned_cols=224  Identities=14%  Similarity=0.157  Sum_probs=155.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe--eEEEEecccCcceeEEEEeeeCCeEE-EeeCCCCCCCCCc
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPLN  156 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~d~~~~~~  156 (403)
                      ........|-.++.. ||.++.+-+++.+.+|....+.  ......+.  ....+..+.-.+.... +++|+..-   -.
T Consensus       100 ~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~---~n  173 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKEN---IN  173 (412)
T ss_pred             ccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhc---cc
Confidence            445556677777664 5666666556669999987332  11112222  2234444444444333 34354320   14


Q ss_pred             eEEEEECCCCceeEEEe----------cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCc-eeeeEeeccCCCceeE
Q 015650          157 KVMIWDDHQSRCIGELS----------FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLC  220 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~----------~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~  220 (403)
                      .++|||+++.+.+..-+          -+-.++++.|-+.  ...++   --+.+++||.+.+ +++..+.....++.++
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST  253 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence            69999999886655433          1234567888776  55555   2679999999875 5678888888999999


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCCcee--EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      ...|+++.+|+   |...+.+..||++.+.+.  .+.+-.+.|++|..+|.+.+|++++-|.. |||+|+++.+++....
T Consensus       254 ~l~p~gn~Iy~---gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  254 GLTPSGNFIYT---GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVY  329 (412)
T ss_pred             eecCCCcEEEE---ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhh
Confidence            99999986544   457799999999997753  36778899999999999999999999999 9999999988877666


Q ss_pred             cCCCcccEEEEEeCCCCC
Q 015650          299 RGADRAEIYSLAFSSNAQ  316 (403)
Q Consensus       299 ~~~~~~~v~~l~~s~d~~  316 (403)
                      .   ...+++|.+.++-.
T Consensus       330 v---Ks~lt~il~~~~~n  344 (412)
T KOG3881|consen  330 V---KSRLTFILLRDDVN  344 (412)
T ss_pred             h---hccccEEEecCCcc
Confidence            3   35677777765433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=1.2e-08  Score=89.49  Aligned_cols=241  Identities=10%  Similarity=0.096  Sum_probs=144.5

Q ss_pred             CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE--EEeeCC--------CCCCCCCceEEEEECCCCceeEEEecC
Q 015650          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGG--------PDPQYPLNKVMIWDDHQSRCIGELSFR  175 (403)
Q Consensus       106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~--------~d~~~~~~~i~iwd~~~~~~~~~~~~~  175 (403)
                      +.|.+.|.++.+.+  ..+..+.....  + +++++.  +++...        ++     ..|.+||..+.+.+.++...
T Consensus        27 ~~v~ViD~~~~~v~--g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~-----d~V~v~D~~t~~~~~~i~~p   96 (352)
T TIGR02658        27 TQVYTIDGEAGRVL--GMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRT-----DYVEVIDPQTHLPIADIELP   96 (352)
T ss_pred             ceEEEEECCCCEEE--EEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCC-----CEEEEEECccCcEEeEEccC
Confidence            45999998887655  44442222222  2 566544  343330        33     79999999999999998843


Q ss_pred             Cc--------eeEEEEecCceEEE----e-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650          176 SE--------VRSVKLRRDRIIVV----L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (403)
Q Consensus       176 ~~--------i~~~~~~~~~~~~~----~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (403)
                      ..        ...++++|||++++    . ++.|.++|+.+++.+.++.... ....+..+ +.. .++.|   .||...
T Consensus        97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~-~~~~~---~Dg~~~  170 (352)
T TIGR02658        97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDT-FFMHC---RDGSLA  170 (352)
T ss_pred             CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCc-cEEEe---ecCceE
Confidence            32        33789999998777    2 6899999999999999887532 22222221 111 12222   344444


Q ss_pred             EEEccC-Cce-----eEEeecCCceE-EEEEcC-CCCEEEEEeCCCcEEEEEEcCC-----CcEEEEEec-----CCCcc
Q 015650          243 VEHYAS-KRT-----KFIMAHDSRIA-CFALTQ-DGQLLATSSTKGTLVRIFNTLD-----GTLLQEVRR-----GADRA  304 (403)
Q Consensus       243 v~d~~~-~~~-----~~~~~~~~~i~-~~~~sp-~g~~l~s~~~dg~~i~iwd~~~-----~~~~~~~~~-----~~~~~  304 (403)
                      ...+.. ++.     ..+.....++. .-.|.+ +|++++.... |. |.+.|+..     .+....+..     +...+
T Consensus       171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~  248 (352)
T TIGR02658       171 KVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG  248 (352)
T ss_pred             EEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCC
Confidence            433332 111     11111001100 004455 8888877666 88 99999543     333333221     12334


Q ss_pred             cEEEEEeCCCCCEEEEEe----------CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650          305 EIYSLAFSSNAQWLAVSS----------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (403)
                      .+.-++++++++++++..          ..+.|.++|..+++.                                   +.
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv-----------------------------------i~  293 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR-----------------------------------LR  293 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE-----------------------------------EE
Confidence            555699999999888753          124788889888873                                   22


Q ss_pred             EEEEeCCCceEEEeccCCC-EEEEEcc
Q 015650          375 QFRLVEGSPYIVAFGHQKN-TVVILGM  400 (403)
Q Consensus       375 ~~~~~~~~~~~~~fs~d~~-~l~~~~~  400 (403)
                      ++.. +..+..++|+||++ .|++.+.
T Consensus       294 ~i~v-G~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       294 KIEL-GHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             EEeC-CCceeeEEECCCCCeEEEEeCC
Confidence            2222 45778899999999 8877663

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.32  E-value=2.1e-08  Score=85.60  Aligned_cols=221  Identities=15%  Similarity=0.081  Sum_probs=144.3

Q ss_pred             EEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEe-cCceEEE-ecCeEEEEEcCCceeeeEe
Q 015650          134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVV-LEQKIFVYNFADLKLLHQI  210 (403)
Q Consensus       134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~  210 (403)
                      ...|.+ ++.++++.-..     +.|..|+..+++.. .+.... ...+.+. +++.+++ ..+.+.++|+.+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTT-----TEEEEEETTTTEEE-EEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCC-----CEEEEEECCCCeEE-EEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEe
Confidence            356665 56666665555     89999998776543 344333 7777887 7888777 5667888899888654444


Q ss_pred             ec-----cCCCceeEEEeeCCCeEEEEeeCCcc------CeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEE-EeC
Q 015650          211 ET-----IANPKGLCAVSQGVGSLVLVCPGLQK------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT-SST  278 (403)
Q Consensus       211 ~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d------~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s-~~~  278 (403)
                      ..     .......+++.++++ +++...+...      |.|..++.. +....+...-...+.|+|+|+++.|+. -+.
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence            33     122345678888876 5555433211      567777777 555555555566789999999998765 455


Q ss_pred             CCcEEEEEEcCCC-c-E--EEEE-ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcc
Q 015650          279 KGTLVRIFNTLDG-T-L--LQEV-RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (403)
Q Consensus       279 dg~~i~iwd~~~~-~-~--~~~~-~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (403)
                      .+. |..|++... . .  .+.+ ......+..-.+++..+|+++++....+.|.+++.+ ++.                
T Consensus       155 ~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~----------------  216 (246)
T PF08450_consen  155 NGR-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL----------------  216 (246)
T ss_dssp             TTE-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE----------------
T ss_pred             cce-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE----------------
Confidence            566 888888532 2 1  1222 211112347889999999988888889999999977 552                


Q ss_pred             cccccccccccceeeeeeeeEEEEEeCCCceEEEe-ccCCCEEEEEcc
Q 015650          354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF-GHQKNTVVILGM  400 (403)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-s~d~~~l~~~~~  400 (403)
                                         ...+..+...++.++| .++.+.|++.++
T Consensus       217 -------------------~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  217 -------------------LREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -------------------EEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             -------------------EEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence                               3446777668999999 578888887764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.31  E-value=1.6e-08  Score=102.41  Aligned_cols=236  Identities=11%  Similarity=0.127  Sum_probs=150.9

Q ss_pred             EEEEEcCC-CCEEEEEcCCc-EEEEEcCCCeeEEEEeccc-C------------cceeEEEEeeeCCeE-EEeeCCCCCC
Q 015650           89 LHISFNQD-HGCFAAGTDHG-FRIYNCDPFREIFRRDFER-G------------GGIGVVEMLFRCNIL-ALVGGGPDPQ  152 (403)
Q Consensus        89 ~~i~~s~d-~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~-~------------~~~~v~~~~~~~~~~-~~~s~~~d~~  152 (403)
                      ..++++++ +.++++-..+. |++|+.......   .+.. +            .-.....+++.+++. ++++....  
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~---~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n--  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV---QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN--  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEE---EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC--
Confidence            46788875 55555555444 999997643221   2210 0            011245677776543 33433333  


Q ss_pred             CCCceEEEEECCCCceeEEEec------------------CCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEe
Q 015650          153 YPLNKVMIWDDHQSRCIGELSF------------------RSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQI  210 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~~------------------~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~  210 (403)
                         +.|+++|..++. +.++..                  -.....++++| ++.+++   .++.|++||..++... .+
T Consensus       646 ---~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~  720 (1057)
T PLN02919        646 ---HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF  720 (1057)
T ss_pred             ---ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence               689999987654 333310                  11345799999 455544   3678999998776432 22


Q ss_pred             ecc---------------CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee--------------c----
Q 015650          211 ETI---------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--------------H----  257 (403)
Q Consensus       211 ~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~--------------~----  257 (403)
                      .+.               ......++++++++.++++-  ..++.|++||+.++....+.+              +    
T Consensus       721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g  798 (1057)
T PLN02919        721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG  798 (1057)
T ss_pred             ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence            111               11224588999988777765  457899999998754332211              0    


Q ss_pred             ----CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEe
Q 015650          258 ----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       258 ----~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~s~d~~~l~s~~  322 (403)
                          -.....++++++|+++++-..++. |++||..++........+.           .-.....|+++++|+++++-+
T Consensus       799 ~~~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt  877 (1057)
T PLN02919        799 SEVLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT  877 (1057)
T ss_pred             hhhhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence                112468899999998888888888 9999998776654332110           112567899999999888888


Q ss_pred             CCCcEEEEEeecCCC
Q 015650          323 DKGTVHVFNLKVNSG  337 (403)
Q Consensus       323 ~dg~v~iwd~~~~~~  337 (403)
                      .++.|++||+++++.
T Consensus       878 ~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        878 NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCEEEEEECCCCcc
Confidence            999999999998764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.31  E-value=7.6e-10  Score=90.38  Aligned_cols=219  Identities=12%  Similarity=0.120  Sum_probs=142.1

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeC---CeE-EEeeCCCCCCCCCceEEEEECCCCceeEEEec-------CC
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------RS  176 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~-------~~  176 (403)
                      +.+|++...+......+.......+..+.|.-   ++. .++-....     |.|.++..........+..       ..
T Consensus        48 l~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~~~  122 (339)
T KOG0280|consen   48 LHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKISVV  122 (339)
T ss_pred             eEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhhhe
Confidence            67888765544322222212334445555532   222 34444444     8899997655444444431       11


Q ss_pred             ceeEEEEecCceEEE---ecCeEEEEEcCCc--eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650          177 EVRSVKLRRDRIIVV---LEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (403)
Q Consensus       177 ~i~~~~~~~~~~~~~---~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~  251 (403)
                      ...++.|++.+.-++   .+|.+.+-+....  +.++.++.|.-......|+....+  ++.+|++|+.+..||++....
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn--lvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN--LVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc--eEEecCCCceEEEEEecCCcc
Confidence            244667777766655   4777776655444  334577888888888888776654  344577999999999995332


Q ss_pred             e---EEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCCcccEEEEEeCCCCC--EEEEEeCC
Q 015650          252 K---FIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQ--WLAVSSDK  324 (403)
Q Consensus       252 ~---~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~s~d~~--~l~s~~~d  324 (403)
                      .   ..+.|...|.+|.-+| .+.+|++|+.|.. |++||.+ .++++..-.   ..+.|+.+.++|.-.  .|+++-.+
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~  276 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHN  276 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhc
Confidence            2   2456888999998876 6789999999999 9999998 466765554   447899999999543  34444444


Q ss_pred             CcEEEEEeecCCCC
Q 015650          325 GTVHVFNLKVNSGS  338 (403)
Q Consensus       325 g~v~iwd~~~~~~~  338 (403)
                      | .+|-+.+.+..+
T Consensus       277 G-~ki~~~~~~~~e  289 (339)
T KOG0280|consen  277 G-AKILDSSDKVLE  289 (339)
T ss_pred             C-ceEEEecccccc
Confidence            4 788888776643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.30  E-value=6.9e-10  Score=98.91  Aligned_cols=185  Identities=14%  Similarity=0.109  Sum_probs=134.8

Q ss_pred             CCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEee------eC--------------CeEEEeeCCCCCCC
Q 015650           95 QDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF------RC--------------NILALVGGGPDPQY  153 (403)
Q Consensus        95 ~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~------~~--------------~~~~~~s~~~d~~~  153 (403)
                      |-..++|....+| ++||+...++......-...-....+...|      +|              +...++-|...   
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~---   79 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ---   79 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC---
Confidence            4457888887555 999999877654322111111222222222      11              33455555555   


Q ss_pred             CCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                        |.|.+|++..|+.-..+.   |.+.|.++.++.+-..+.   .|..+..|+...++.++.+......+..++++||+.
T Consensus        80 --g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   80 --GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             --ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence              999999999999988887   899999999988877776   588999999999999999988888889999999977


Q ss_pred             eEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCC-----CCEEEEEeC-CCcEEEEEEcCC
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-----GQLLATSST-KGTLVRIFNTLD  290 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~-----g~~l~s~~~-dg~~i~iwd~~~  290 (403)
                      .+.++     .++|++||+++++ +..+.+|.++|.++.|-.+     |.++.++.. +.. |.+|-+..
T Consensus       158 ~l~~a-----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTA-----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK  221 (541)
T ss_pred             EEEec-----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence            44333     3799999999966 4678899999999999876     677765433 334 77886543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.30  E-value=8.6e-10  Score=98.30  Aligned_cols=184  Identities=13%  Similarity=0.214  Sum_probs=136.0

Q ss_pred             CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe----cCCceeEEEEe------c--------------CceEEE---e
Q 015650          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLR------R--------------DRIIVV---L  192 (403)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~------~--------------~~~~~~---~  192 (403)
                      ...+++....|     |.++||+..+++....|.    ..+...+..|.      |              |...++   .
T Consensus         4 ~~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    4 ALDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             hhheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            34556666666     999999999998888776    23444444443      1              112233   3


Q ss_pred             cCeEEEEEcCCceeeeEee--ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCC
Q 015650          193 EQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQD  269 (403)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~  269 (403)
                      .|.|.+|+...++....+.  .|.+.+.++.++.+-.-  +- +++.|+.+..|+...... ..+......+.+++.+||
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c--iy-S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D  155 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC--IY-SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD  155 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCc--eE-ecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence            7899999999998888776  35566666655554432  22 334799999999988665 445667778999999999


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC-----CCEEEEE-eCCCcEEEEEeecCC
Q 015650          270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQWLAVS-SDKGTVHVFNLKVNS  336 (403)
Q Consensus       270 g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d-----~~~l~s~-~~dg~v~iwd~~~~~  336 (403)
                      |+.|++++.  . |++||+++++.+.+|.+  |.++|.++.|.-+     |.+++++ ..+..+.+|-++...
T Consensus       156 ~~~l~~as~--~-ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~  223 (541)
T KOG4547|consen  156 GKILLTASR--Q-IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED  223 (541)
T ss_pred             CCEEEeccc--e-EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence            999998875  4 99999999999999997  7799999999877     6776654 466678899887633

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=2.4e-09  Score=94.83  Aligned_cols=234  Identities=12%  Similarity=0.162  Sum_probs=151.2

Q ss_pred             CCeEEEEEcCCCCEEEEEc-----------C-CcEEEEEcCCCeeEEEEeccc--CcceeEEEEeeeCCeEEEeeCCCCC
Q 015650           86 PTLLHISFNQDHGCFAAGT-----------D-HGFRIYNCDPFREIFRRDFER--GGGIGVVEMLFRCNILALVGGGPDP  151 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~-----------~-~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~s~~~d~  151 (403)
                      ..|.-+.|||..+||++=+           + +.++|||+.++...  +.+..  .....-.-+.|+.|..+++.-..  
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk--rsF~~~~~~~~~WP~frWS~DdKy~Arm~~--  325 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK--RSFPVIKSPYLKWPIFRWSHDDKYFARMTG--  325 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh--cceeccCCCccccceEEeccCCceeEEecc--
Confidence            4588999999999999843           1 22999999988765  44431  22222233456777777776655  


Q ss_pred             CCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe-----c---CeEEEEEcCCceeeeEeeccCCCceeEEE
Q 015650          152 QYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-----E---QKIFVYNFADLKLLHQIETIANPKGLCAV  222 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-----d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  222 (403)
                          ..|.||+.....++..-. ....|....|+|.+.+++.     +   .++.+..+.+++.+++...+.  +..+.+
T Consensus       326 ----~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckL  399 (698)
T KOG2314|consen  326 ----NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKL  399 (698)
T ss_pred             ----ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEE
Confidence                489999876644433322 4678999999999999882     2   367788888777776654332  333444


Q ss_pred             eeCCCeEEEEee---------CCccCeEEEEEccCCceeE-EeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcC
Q 015650          223 SQGVGSLVLVCP---------GLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTL  289 (403)
Q Consensus       223 ~~~~~~~~~~~~---------g~~d~~i~v~d~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~  289 (403)
                      ++..++-+++.-         ++.-..+.|+.++.+.+-. ...-...|...+|-|.|..+++-+.   ..+ +.+|.++
T Consensus       400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~t-vsfY~~e  478 (698)
T KOG2314|consen  400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNT-VSFYAVE  478 (698)
T ss_pred             EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccc-eeEEEee
Confidence            443333233320         1112245566666654322 2334667889999999998876443   235 8999887


Q ss_pred             C-C---cEEEEEecCCCcccEEEEEeCCCCCEEEEEe---CCCcEEEEEeec
Q 015650          290 D-G---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKV  334 (403)
Q Consensus       290 ~-~---~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~---~dg~v~iwd~~~  334 (403)
                      + .   +++..+.    ....+.+.|+|.|++++.+.   ..|.+.++|.+.
T Consensus       479 ~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  479 TNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             cCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            3 2   2333443    24578899999999988764   578899999885

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.28  E-value=3.9e-09  Score=91.88  Aligned_cols=144  Identities=11%  Similarity=0.163  Sum_probs=113.6

Q ss_pred             CceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC-eEEEEEccCCceeEEeecCCceE
Q 015650          186 DRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKRTKFIMAHDSRIA  262 (403)
Q Consensus       186 ~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~v~d~~~~~~~~~~~~~~~i~  262 (403)
                      +|.+++  +.|+..+.+...+-.++.  ++...+....+..+++..++.+   .|| .+-++|.++++.+.+...-+.|.
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt---~dgD~l~iyd~~~~e~kr~e~~lg~I~  405 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGT---NDGDKLGIYDKDGGEVKRIEKDLGNIE  405 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEec---cCCceEEEEecCCceEEEeeCCccceE
Confidence            344444  788988888766554443  4456677777877877655554   677 89999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC----cEEEEEeecCCC
Q 015650          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKVNSG  337 (403)
Q Consensus       263 ~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg----~v~iwd~~~~~~  337 (403)
                      ++..+++|++++.+..... |.+.|+.+++....-+  ...+-|+.+.|+|++++||-+--+|    .|+++|+..++.
T Consensus       406 av~vs~dGK~~vvaNdr~e-l~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         406 AVKVSPDGKKVVVANDRFE-LWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             EEEEcCCCcEEEEEcCceE-EEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            9999999999998888777 9999999998753332  2457899999999999999775444    689999999874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.1e-11  Score=108.99  Aligned_cols=158  Identities=13%  Similarity=0.197  Sum_probs=124.6

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecC--ceEEE---ecC
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVV---LEQ  194 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~--~~~~~---~d~  194 (403)
                      ..+. +|...|.++.|+.+|.+|++|++|     -.+.|||.-..+++..+.  |...|.++.|-|.  .++++   .|.
T Consensus        44 ~eL~-GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   44 AELT-GHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhc-cccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            4565 899999999999999999999999     999999999889988887  9999999999983  44555   589


Q ss_pred             eEEEEEcCCc----------eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce--e---------E
Q 015650          195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--K---------F  253 (403)
Q Consensus       195 ~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~--~---------~  253 (403)
                      .|+++|+...          +....+..|...+.-++..|++.+.+..+  ++||+|+-+|++....  .         .
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa--sEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA--SEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe--cCCcceeeecccCCccCCccccccHHHHH
Confidence            9999999841          23344556777888889999887666554  5999999999987221  1         1


Q ss_pred             EeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEc
Q 015650          254 IMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNT  288 (403)
Q Consensus       254 ~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~  288 (403)
                      +...--...|+.++|. ..+|+.|+.|-. .++||.
T Consensus       196 y~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~  230 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDR  230 (758)
T ss_pred             hchhhheeeeeeecCCCCceEEecCCCch-hhhhhh
Confidence            1112235678999994 567889999998 999995

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.27  E-value=5.5e-10  Score=93.10  Aligned_cols=200  Identities=13%  Similarity=0.193  Sum_probs=138.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC--CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      .+...-..+++++.+.++.+.|++|-+++ +.-+.+..  ++....+... .|...+..+.|+-....+++.+.|     
T Consensus        62 sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~d-----  135 (404)
T KOG1409|consen   62 SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKD-----  135 (404)
T ss_pred             hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccc-----
Confidence            44555667899999999999999999777 77666531  1222223333 688899999999888899999987     


Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEc--CCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      ..+.---.+.+..+..+.......++.+.-.-.++. ..|.|.+..+  ..-..+..+.+|.+.+.+++|.+....  + 
T Consensus       136 k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~--L-  212 (404)
T KOG1409|consen  136 KQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL--L-  212 (404)
T ss_pred             cceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcE--E-
Confidence            555444445555555444333333333322211111 2344444333  345677888889998888888876653  2 


Q ss_pred             eeCCccCeEEEEEccCC--ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650          233 CPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~  288 (403)
                      .+|..|..+.+||+...  ....+.+|...|..+...+.-+.|.+++.||. |.+||+
T Consensus       213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~m  269 (404)
T KOG1409|consen  213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNM  269 (404)
T ss_pred             EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEec
Confidence            24678999999998774  45667889999999999888899999999999 999997

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=7e-09  Score=94.66  Aligned_cols=193  Identities=11%  Similarity=0.058  Sum_probs=127.9

Q ss_pred             eEEEEeeeCCeEE-Ee-e-CC-CCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--e----cCeEEEEE
Q 015650          131 GVVEMLFRCNILA-LV-G-GG-PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L----EQKIFVYN  200 (403)
Q Consensus       131 ~v~~~~~~~~~~~-~~-s-~~-~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~----d~~i~i~d  200 (403)
                      ......|+|++.. ++ + -. ..     ..|+++|+.+++........+......|+|||..++  .    +..|+++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~-----~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERK-----PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCC-----CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            6678889998752 33 2 22 23     579999998887665555666677788999997666  2    35799999


Q ss_pred             cCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC
Q 015650          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (403)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg  280 (403)
                      +.+++.. .+...........|+||++.+++.+.......|.++|+.++....+......  ...|+|||++|+..+...
T Consensus       264 l~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        264 TNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             CCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCC
Confidence            8877643 3433333334568999999988876332334788888888777555432222  248999999998766532


Q ss_pred             --------cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-Cc--EEEEEeecC
Q 015650          281 --------TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-GT--VHVFNLKVN  335 (403)
Q Consensus       281 --------~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d-g~--v~iwd~~~~  335 (403)
                              ..|.+.|+.+++.. .+...   .......|+|||+.|+....+ +.  |.+.+++..
T Consensus       341 ~~~~~~~~~~I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        341 NNEFGKNTFNLYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CcccCCCCcEEEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence                    23888898888654 34322   223358899999988766532 33  555566443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.25  E-value=1.2e-09  Score=105.16  Aligned_cols=214  Identities=12%  Similarity=0.106  Sum_probs=147.2

Q ss_pred             EEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCC-------ceeEEEe-cCCceeEEEEecCceE
Q 015650          119 IFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRII  189 (403)
Q Consensus       119 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~-------~~~~~~~-~~~~i~~~~~~~~~~~  189 (403)
                      .+...+. .|...+..++.++. +.++++++.|     |+|++|+...-       +...++. -...+..+...+.+..
T Consensus      1039 ~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1039 ILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             eEeehhh-hccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            4445665 57777777777665 4899999999     99999997542       2233344 4678888888888777


Q ss_pred             EE---ecCeEEEEEcCC--ce-----eeeEeeccCC--CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce---eEE
Q 015650          190 VV---LEQKIFVYNFAD--LK-----LLHQIETIAN--PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFI  254 (403)
Q Consensus       190 ~~---~d~~i~i~d~~~--~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~---~~~  254 (403)
                      ++   .||.|.+.++..  .+     +.+....+..  .+..-++........+++ +...+.|..||++....   ...
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhc
Confidence            77   499999999875  11     1111111221  222333333333322332 34778999999988442   223


Q ss_pred             eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC---CEEEEEe--CCCcEEE
Q 015650          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA---QWLAVSS--DKGTVHV  329 (403)
Q Consensus       255 ~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~---~~l~s~~--~dg~v~i  329 (403)
                      ....+.|++++.+|.+.++++|+..|. +-+||++=+.++..+.-+ +..+|+.+..+|-.   ...++++  ..+.|-+
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence            445678999999999999999999999 999999999998888754 44788888777643   3555444  5778999


Q ss_pred             EEeecCCCCCCC
Q 015650          330 FNLKVNSGSARS  341 (403)
Q Consensus       330 wd~~~~~~~~~~  341 (403)
                      |++.++.....+
T Consensus      1270 wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1270 WNMETGLRQTVL 1281 (1431)
T ss_pred             eecccCcceEEE
Confidence            999998654333

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=2.2e-09  Score=95.43  Aligned_cols=177  Identities=10%  Similarity=0.205  Sum_probs=138.9

Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCC-----------CceeE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-----------PKGLC  220 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-----------~~~~~  220 (403)
                      ..|+-++++.|+.+..+. ....++++..++...+++   .+|.|-.||.++...+..+.....           .++.+
T Consensus       155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal  234 (703)
T KOG2321|consen  155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL  234 (703)
T ss_pred             cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence            469999999999999998 568999999999877777   389999999998766665543221           14445


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC--CceEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD--SRIACFALTQD--GQLLATSSTKGTLVRIFNTLDGTLLQE  296 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~--~~i~~~~~sp~--g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (403)
                      .|+  ++++.+++ |...|.+.|||++.........|.  -+|..+.|.+.  +..+++. .... ++|||-.+|+....
T Consensus       235 ~F~--d~gL~~aV-Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~-~kiWd~~~Gk~~as  309 (703)
T KOG2321|consen  235 KFR--DDGLHVAV-GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRI-LKIWDECTGKPMAS  309 (703)
T ss_pred             Eec--CCceeEEe-eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHH-hhhcccccCCceee
Confidence            554  44666666 668999999999998887777775  46888889775  4455543 3345 99999999999988


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~  340 (403)
                      +..   ...++.+++-|++.+++++-+++.+..|=+..-.+.++
T Consensus       310 iEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPr  350 (703)
T KOG2321|consen  310 IEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPR  350 (703)
T ss_pred             ccc---cCCcCceeeecCCceEEEecCCCcceeEEccccCCCch
Confidence            873   45699999999999999999999999998888776554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.19  E-value=7e-08  Score=96.03  Aligned_cols=301  Identities=12%  Similarity=0.168  Sum_probs=177.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEE----EcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIY----NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ...+.|.++.|-++...++.+..+| |.+.    +...........    -..+|.+++|+||...++-...+     ++
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~----vd~GI~a~~WSPD~Ella~vT~~-----~~  143 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS----VDSGILAASWSPDEELLALVTGE-----GN  143 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE----EcCcEEEEEECCCcCEEEEEeCC-----CE
Confidence            3457899999999998888888666 7777    444443333333    44789999999987665555444     66


Q ss_pred             EEEEEC---------------CC--------CceeEEEe-------------------------cCCceeEEEEecCceE
Q 015650          158 VMIWDD---------------HQ--------SRCIGELS-------------------------FRSEVRSVKLRRDRII  189 (403)
Q Consensus       158 i~iwd~---------------~~--------~~~~~~~~-------------------------~~~~i~~~~~~~~~~~  189 (403)
                      +.+.+-               ..        |+.-..|.                         ....-..++|-.||.+
T Consensus       144 l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y  223 (928)
T PF04762_consen  144 LLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY  223 (928)
T ss_pred             EEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence            666531               00        11101110                         1223456889999999


Q ss_pred             EEe-------c--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC--CccCeEEEEEccCCceeEEe---
Q 015650          190 VVL-------E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASKRTKFIM---  255 (403)
Q Consensus       190 ~~~-------d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d~~i~v~d~~~~~~~~~~---  255 (403)
                      ++.       +  ..+++|+- .|++..+-+...+--..++|.|.|+  ++|++-  .....|.+|.-++-+...+.   
T Consensus       224 FAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~--lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~  300 (928)
T PF04762_consen  224 FAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGN--LIASSQRLPDRHDVVFFERNGLRHGEFTLRF  300 (928)
T ss_pred             EEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCC--EEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence            881       2  47999995 4765554443344445788888887  444422  13356777776654333332   


Q ss_pred             -ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE--EEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015650          256 -AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN  331 (403)
Q Consensus       256 -~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd  331 (403)
                       .....|..+.|++|+..||....|.  |.+|-..+..-  .+++.-. ....+..+.|+|.. ..|...+.+|.+..++
T Consensus       301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             CCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence             3456799999999999999977655  99998877642  2233321 22345569999954 4577777767776655


Q ss_pred             eecCCCCCCCCCCCCCCCCCccccccc-c----cccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          332 LKVNSGSARSEPRSTSDPTLPTSSLSF-I----KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      +.-.............-.+.-..+... +    ...+|    ..-+..++.+ ...+..++|++++..+++...||+
T Consensus       378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP----PPMs~~~l~~-~~~v~~vaf~~~~~~~avl~~d~~  449 (928)
T PF04762_consen  378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP----PPMSSYELEL-PSPVNDVAFSPSNSRFAVLTSDGS  449 (928)
T ss_pred             EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC----chHhceEEcC-CCCcEEEEEeCCCCeEEEEECCCC
Confidence            543221100000000000001111111 1    11222    1222233444 358999999999988998888874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=6.7e-10  Score=96.68  Aligned_cols=205  Identities=16%  Similarity=0.146  Sum_probs=153.1

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecC---ceEEE--ecC
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD---RIIVV--LEQ  194 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~---~~~~~--~d~  194 (403)
                      ..|. .|...+..+.|+..+..+++++.|     ..|.+||...++....+.  |...|....|-|.   ..++.  .||
T Consensus       136 ~kL~-~H~GcVntV~FN~~Gd~l~SgSDD-----~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  136 KKLN-KHKGCVNTVHFNQRGDVLASGSDD-----LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             hccc-CCCCccceeeecccCceeeccCcc-----ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence            3454 789999999999999999999999     999999999999888887  7788887778773   33333  589


Q ss_pred             eEEEEEcCC-cee--eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee----EEeecCC---ceEEE
Q 015650          195 KIFVYNFAD-LKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDS---RIACF  264 (403)
Q Consensus       195 ~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~----~~~~~~~---~i~~~  264 (403)
                      .+++=.+.. +.+  ...+..|.+++..+++-|+....++.+  +.|+.+.-+|++.....    ....+..   ....+
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence            988877643 322  344567889999999999988777665  47999999999874322    2223333   56788


Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEEEcCCCcE------EEEEecC----CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          265 ALTQDGQ-LLATSSTKGTLVRIFNTLDGTL------LQEVRRG----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       265 ~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~------~~~~~~~----~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      +..|... .+++++.|.. +++||.+.-..      +..+..+    .....|++++|+.++.-|++...|-.|++|.-.
T Consensus       288 a~~P~nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  288 AVDPRNTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             ecCCCCccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence            9999655 7899999999 99999865321      2222221    133579999999888888888889899999443


Q ss_pred             cC
Q 015650          334 VN  335 (403)
Q Consensus       334 ~~  335 (403)
                      -+
T Consensus       367 ~~  368 (559)
T KOG1334|consen  367 MG  368 (559)
T ss_pred             cc
Confidence            33

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.16  E-value=9.4e-10  Score=93.66  Aligned_cols=161  Identities=14%  Similarity=0.144  Sum_probs=112.8

Q ss_pred             eEEEEecCceEEE---ecCeEEEEEcCCc----eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650          179 RSVKLRRDRIIVV---LEQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (403)
Q Consensus       179 ~~~~~~~~~~~~~---~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~  251 (403)
                      ..+..++.+++++   .+....+++....    +.+........+ ..+.+..+.....++-..++...+.+|....++.
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~-~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP-TAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc-ceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            3445556666666   2334444444332    222222222222 3444444444444443223556666776666777


Q ss_pred             eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      ..+.+|-..++.++|+||+++|+++..|+. |+|-.......+..+..+ |..-|..++.-+ ++.|+++|.|++|++||
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~-~~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTD-NYLLLSGSGDKTLRLWD  221 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeecc-CceeeecCCCCcEEEEe
Confidence            888899999999999999999999999999 999888877777777765 888999999975 46689999999999999


Q ss_pred             eecCCCCCCCCC
Q 015650          332 LKVNSGSARSEP  343 (403)
Q Consensus       332 ~~~~~~~~~~~~  343 (403)
                      +.+++...+.+.
T Consensus       222 ~~sgk~L~t~dl  233 (390)
T KOG3914|consen  222 ITSGKLLDTCDL  233 (390)
T ss_pred             cccCCcccccch
Confidence            999998877663

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.16  E-value=1.8e-08  Score=87.77  Aligned_cols=147  Identities=12%  Similarity=-0.010  Sum_probs=112.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      .+..+|...|....+.-++.-++.|..++  +-||+.++++..   .+. ..-..|.++..++++..++.+...     .
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---r~e-~~lg~I~av~vs~dGK~~vvaNdr-----~  423 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---RIE-KDLGNIEAVKVSPDGKKVVVANDR-----F  423 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---Eee-CCccceEEEEEcCCCcEEEEEcCc-----e
Confidence            55677888899999988888888888444  999999877633   232 456789999999999988888776     8


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe-------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      .|.+.|+.+|.....=+ ..+-|..+.|+|++++++.       -..|++||+..++.... ......-..-+|.|+++.
T Consensus       424 el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~DfsPaFD~d~ry  502 (668)
T COG4946         424 ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAYDFSPAFDPDGRY  502 (668)
T ss_pred             EEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCcccccCcccCCCCcE
Confidence            99999999987644333 5677999999999999992       45799999988765543 333344466788899998


Q ss_pred             EEEEeeC
Q 015650          229 LVLVCPG  235 (403)
Q Consensus       229 ~~~~~~g  235 (403)
                      +++.+.-
T Consensus       503 LYfLs~R  509 (668)
T COG4946         503 LYFLSAR  509 (668)
T ss_pred             EEEEecc
Confidence            8887643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.16  E-value=4e-08  Score=86.44  Aligned_cols=237  Identities=9%  Similarity=0.111  Sum_probs=157.9

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe--EEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      -+.|+.+.+++|---.+.+.|+++ +.... ...+..-....+..+.++|.+  ..++.-.-...-.++.+++|.+..+.
T Consensus       136 ~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s  213 (561)
T COG5354         136 VLKFSIDDKYVARVVGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS  213 (561)
T ss_pred             eeeeeecchhhhhhccCeEEEEec-CCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence            567888887777655566888886 22211 122221234567777777752  12222111111123889999998777


Q ss_pred             eeEEEe-cCCceeEEEEecCceEEEe--------------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          168 CIGELS-FRSEVRSVKLRRDRIIVVL--------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       168 ~~~~~~-~~~~i~~~~~~~~~~~~~~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      .+.+.. ..-.=..+.|++.|.+++.              ...+++++++.. -+.......++|...+|.|.++++.++
T Consensus       214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi  292 (561)
T COG5354         214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVI  292 (561)
T ss_pred             eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEE
Confidence            666655 4444456888888877661              357889998743 333332457889999999999987666


Q ss_pred             eeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCcEEE-EEecCCCcccEEE
Q 015650          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQ-EVRRGADRAEIYS  308 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~-~~~~~~~~~~v~~  308 (403)
                      + |-..-.+.++|++......+  ....=..+.|+|.+++++.++-|   |. |-+||........ .+.+    ....-
T Consensus       293 ~-g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s~  364 (561)
T COG5354         293 S-GYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTSY  364 (561)
T ss_pred             e-cccccceeecccccceEEec--CCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCceE
Confidence            4 77889999999998833332  33344567899999999987765   56 9999987655444 5553    34566


Q ss_pred             EEeCCCCCEEEEEe------CCCcEEEEEeecCCC
Q 015650          309 LAFSSNAQWLAVSS------DKGTVHVFNLKVNSG  337 (403)
Q Consensus       309 l~~s~d~~~l~s~~------~dg~v~iwd~~~~~~  337 (403)
                      +.|+||++++.+..      .|..++|||+...+.
T Consensus       365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             eeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence            78999999887664      478899999987663

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=2e-09  Score=102.07  Aligned_cols=176  Identities=13%  Similarity=0.149  Sum_probs=137.9

Q ss_pred             ceEEEEECCCCceeEEEecCCce-----eEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEV-----RSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      +.+.+||...+.....+.+.+..     .-+.++++..+++   .-+.|.+|+....+.-..+.+|.+.+..+.++.++.
T Consensus       109 ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~  188 (967)
T KOG0974|consen  109 NSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR  188 (967)
T ss_pred             ceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCc
Confidence            78999998888777777644432     2234456666666   468899999874333335779999999999998988


Q ss_pred             eEEEEeeCCccCeEEEEEccCCcee--EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      .++.+   ++|..+++|++++.+..  ...+|...+..++|.|.  ++++++.|.+ .++|+. +++.+..+..| ....
T Consensus       189 ~i~s~---SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~-~~~~l~~y~~h-~g~~  260 (967)
T KOG0974|consen  189 YIASV---SDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGV-NGTQLEVYDEH-SGKG  260 (967)
T ss_pred             EEEEE---ecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEec-ccceehhhhhh-hhcc
Confidence            55444   48999999999996643  46689999999999998  8999999999 999975 56666677764 3467


Q ss_pred             EEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      |+.++..++...+++++.|+.+++|++.....+.
T Consensus       261 iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~  294 (967)
T KOG0974|consen  261 IWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEG  294 (967)
T ss_pred             eeEEEEcCCceEEEeeccCcchhhhhhhcccccc
Confidence            9999999999999999999999999998776543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.14  E-value=1.4e-07  Score=86.07  Aligned_cols=219  Identities=18%  Similarity=0.145  Sum_probs=130.6

Q ss_pred             CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec
Q 015650           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (403)
Q Consensus        96 d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~  174 (403)
                      ++..+++++ ++.+..+|.++++......+.  .. ........ ++..++.. .+     +.|+.||.++|+.+..+..
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~p~v~-~~~v~v~~-~~-----g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SE-VLSPPLVA-NGLVVVRT-ND-----GRLTALDAATGERLWTYSR  173 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ce-eecCCEEE-CCEEEEEC-CC-----CeEEEEEcCCCceeeEEcc
Confidence            345555555 555999999888877655543  11 11111222 33344433 34     8999999999998887763


Q ss_pred             CCcee------EEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCC----------c-eeEEEeeCCCeEEEEeeC
Q 015650          175 RSEVR------SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP----------K-GLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       175 ~~~i~------~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~g  235 (403)
                      .....      ..... ++.+++  .++.+..+|+++|+.+.........          + ....+  .++.+++.   
T Consensus       174 ~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~---  247 (377)
T TIGR03300       174 VTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAV---  247 (377)
T ss_pred             CCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEE---
Confidence            32221      11222 344444  4689999999999877654321100          0 01111  23444443   


Q ss_pred             CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~  315 (403)
                      ..++.++.||..+++..-...... .....  .++..++.++.+|. |..+|..+++.+-..... ......+...  .+
T Consensus       248 ~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g  320 (377)
T TIGR03300       248 SYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--VG  320 (377)
T ss_pred             EcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--EC
Confidence            367899999998876543222211 12222  25667888888999 999999999877555321 1112222222  46


Q ss_pred             CEEEEEeCCCcEEEEEeecCCC
Q 015650          316 QWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       316 ~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ..|++++.+|.|+++|.++++.
T Consensus       321 ~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       321 GYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             CEEEEEeCCCEEEEEECCCCCE
Confidence            7888999999999999998873

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.13  E-value=1.2e-07  Score=80.26  Aligned_cols=239  Identities=18%  Similarity=0.174  Sum_probs=154.4

Q ss_pred             CCeEEEEEcC-CCCEEEEEcCCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           86 PTLLHISFNQ-DHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        86 ~~i~~i~~s~-d~~~l~~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      .....++.+| .+..++.+-.-+  ..+||..+++......-. ...--.-.-.|++++.+|++...|..-..|.|-|||
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            3456788899 456667776444  889999887766332221 111122245689999999988877555569999999


Q ss_pred             CC-CCceeEEEe-cCCceeEEEEecCceEEE-e--------------------cCeEEEEEcCCceeeeEeec----cCC
Q 015650          163 DH-QSRCIGELS-FRSEVRSVKLRRDRIIVV-L--------------------EQKIFVYNFADLKLLHQIET----IAN  215 (403)
Q Consensus       163 ~~-~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~--------------------d~~i~i~d~~~~~~~~~~~~----~~~  215 (403)
                      .. +.+.+.++. +.-....+.+.||+..|+ .                    +-.+...|..+|+.+.+...    +..
T Consensus        84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            98 567778887 666777889999994444 2                    22466677788887776432    556


Q ss_pred             CceeEEEeeCCCeEEEEee--CC---ccCeEEEEEccCCceeEE-------eecCCceEEEEEcCCCCEEEEEeCCCcEE
Q 015650          216 PKGLCAVSQGVGSLVLVCP--GL---QKGQVRVEHYASKRTKFI-------MAHDSRIACFALTQDGQLLATSSTKGTLV  283 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~--g~---~d~~i~v~d~~~~~~~~~-------~~~~~~i~~~~~sp~g~~l~s~~~dg~~i  283 (403)
                      .+..+++..++.- +++.-  |.   .--.|-+++.... ...+       ..-.+.+-+|++++++.++++.|-.|.++
T Consensus       164 SiRHLa~~~~G~V-~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  164 SIRHLAVDGDGTV-AFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             ceeeEEecCCCcE-EEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            6778888877642 22210  10   0112333332221 2222       23357899999999999998877776669


Q ss_pred             EEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      .+||..+++.+.....    ..+..++-.+++ ++++. ..|.  ++.+...
T Consensus       242 ~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ss-G~G~--~~~~~~~  285 (305)
T PF07433_consen  242 AVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSS-GQGQ--LIRLSPD  285 (305)
T ss_pred             EEEECCCCCEeecccc----CceeeeeecCCc-eEEeC-CCcc--EEEccCc
Confidence            9999999999877763    357778877776 45444 3454  3444433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.12  E-value=1.2e-06  Score=74.65  Aligned_cols=212  Identities=15%  Similarity=0.101  Sum_probs=140.7

Q ss_pred             EEEEcC-CCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeee-CCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650           90 HISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQS  166 (403)
Q Consensus        90 ~i~~s~-d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~~~~~~i~iwd~~~~  166 (403)
                      ++.|.+ ++.++++...++ |..|+..+..... ..+.  .   ...+.+. +++.++++..       +.+.++|..++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--S---EEEEEEECTTSEEEEEET-------TCEEEEETTTT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--C---CceEEEEccCCEEEEEEc-------CceEEEecCCC
Confidence            568888 666666665444 8889887765442 2332  2   5666666 6777777765       45677798888


Q ss_pred             ceeEEEec------CCceeEEEEecCceEEEec-----------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          167 RCIGELSF------RSEVRSVKLRRDRIIVVLE-----------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       167 ~~~~~~~~------~~~i~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      +....+..      ....+.+++.++|.+.+.+           +.|+.++.. ++..... ........++|+++++.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEE
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchhe
Confidence            65444432      2457889999999877731           568888876 5543333 334445789999999987


Q ss_pred             EEEeeCCccCeEEEEEccCCc--e---eEE-eecC--CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC
Q 015650          230 VLVCPGLQKGQVRVEHYASKR--T---KFI-MAHD--SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~--~---~~~-~~~~--~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (403)
                      |++-  +..+.|..+++....  +   ..+ ....  +....++++.+|++.++....+. |.++|.. |+.+..+... 
T Consensus       149 yv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p-  223 (246)
T PF08450_consen  149 YVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP-  223 (246)
T ss_dssp             EEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S-
T ss_pred             eecc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC-
Confidence            7765  456789999986422  1   222 2222  24788999999998877777777 9999975 9999988864 


Q ss_pred             CcccEEEEEe-CCCCCEEEEEe
Q 015650          302 DRAEIYSLAF-SSNAQWLAVSS  322 (403)
Q Consensus       302 ~~~~v~~l~~-s~d~~~l~s~~  322 (403)
                       ...+++++| .++.+.|+..+
T Consensus       224 -~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  224 -VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -SSSEEEEEEESTTSSEEEEEE
T ss_pred             -CCCEEEEEEECCCCCEEEEEe
Confidence             248999999 47767665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.12  E-value=2.8e-07  Score=91.86  Aligned_cols=201  Identities=15%  Similarity=0.144  Sum_probs=127.2

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE----ECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEE
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW----DDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYN  200 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw----d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d  200 (403)
                      ....|.++.|-.+...++.+..+     |.|.+.    +..+...-..=.....|.+++|+||+.+++   .++++.+.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~-----Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALAS-----GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECC-----ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            45689999987776544444444     888888    544433222222678999999999998888   356666653


Q ss_pred             cCCce------------------------eeeEeeccCC----------------------CceeEEEeeCCCeEEEEee
Q 015650          201 FADLK------------------------LLHQIETIAN----------------------PKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       201 ~~~~~------------------------~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~  234 (403)
                      . +.+                        .-.+|.+..+                      .-..+.+++.|++.|+|++
T Consensus       149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs  227 (928)
T PF04762_consen  149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS  227 (928)
T ss_pred             c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence            2 111                        1111111000                      0033556666666666663


Q ss_pred             CC--c---cCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC--CCcEEEEEEcCCCcEEEEEecC--CCccc
Q 015650          235 GL--Q---KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRG--ADRAE  305 (403)
Q Consensus       235 g~--~---d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~--dg~~i~iwd~~~~~~~~~~~~~--~~~~~  305 (403)
                      .-  .   -..++||+-++.....-..-.+--.+++|-|.|++||+.-.  +...|.+|. ++|-.-..|...  .....
T Consensus       228 s~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~  306 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEK  306 (928)
T ss_pred             EEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCce
Confidence            32  2   36899999774333333333444567899999999988765  222288887 566655555542  24468


Q ss_pred             EEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      |..|.|++|+..||..-.|. |++|-..+..
T Consensus       307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             eeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            99999999999999987665 9999888765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=2.5e-07  Score=93.83  Aligned_cols=193  Identities=9%  Similarity=0.081  Sum_probs=123.6

Q ss_pred             EEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec--C-------------CceeEEEEecCceE-EEe---c
Q 015650          134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--R-------------SEVRSVKLRRDRII-VVL---E  193 (403)
Q Consensus       134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~--~-------------~~i~~~~~~~~~~~-~~~---d  193 (403)
                      .+++++ ++..+++....     +.|++||.. ++.+..+..  .             .....+++.+++.. .+.   +
T Consensus       572 gvavd~~~g~lyVaDs~n-----~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNH-----NRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             eEEEECCCCeEEEEECCC-----CeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            455654 45555665555     899999964 554444331  1             13578899987653 332   4


Q ss_pred             CeEEEEEcCCceeeeEeecc-----------------CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee
Q 015650          194 QKIFVYNFADLKLLHQIETI-----------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA  256 (403)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~  256 (403)
                      +.|+++|+.++. +.++.+.                 ...-..+++++++..++++.  ..++.|++||..++.+..+.+
T Consensus       646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--~~~~~I~v~d~~~g~v~~~~G  722 (1057)
T PLN02919        646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--AGQHQIWEYNISDGVTRVFSG  722 (1057)
T ss_pred             ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--CCCCeEEEEECCCCeEEEEec
Confidence            689999987654 3333211                 01124578888777766664  457889999988766554332


Q ss_pred             c---------------CCceEEEEEcCCCCEEEE-EeCCCcEEEEEEcCCCcEEEEEec-----------CC--------
Q 015650          257 H---------------DSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTLLQEVRR-----------GA--------  301 (403)
Q Consensus       257 ~---------------~~~i~~~~~sp~g~~l~s-~~~dg~~i~iwd~~~~~~~~~~~~-----------~~--------  301 (403)
                      .               -.....|+++|+|++|+. -+.++. |++||+.++.......+           +.        
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence            1               123457999999986554 445567 99999987654211100           00        


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .-....+++++++|.++++-+.++.|++||.+++.
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~  836 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR  836 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence            00124689999999988888899999999998765

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=6.8e-09  Score=86.75  Aligned_cols=199  Identities=12%  Similarity=0.150  Sum_probs=134.9

Q ss_pred             CCCCCCeEEEEEcCCCC---EEEEEcCCcEEEEEcCCCeeE---------------------------------EEEecc
Q 015650           82 SSPPPTLLHISFNQDHG---CFAAGTDHGFRIYNCDPFREI---------------------------------FRRDFE  125 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~---~l~~~~~~~i~iw~~~~~~~~---------------------------------~~~~~~  125 (403)
                      ..-...|+.+.|.+++.   +|+++.|.+|++|.+......                                 ..+.+.
T Consensus        81 leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~a  160 (433)
T KOG1354|consen   81 LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYA  160 (433)
T ss_pred             hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecc
Confidence            34456899999988764   567777888999987422111                                 112333


Q ss_pred             cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce---eEEEe------cCCceeEEEEecCce-EEE---e
Q 015650          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC---IGELS------FRSEVRSVKLRRDRI-IVV---L  192 (403)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~---~~~~~------~~~~i~~~~~~~~~~-~~~---~  192 (403)
                      ..|..-|.++.++.|...+.++++      =.|.+|+++--..   +..++      ...-|++..|+|..- .++   +
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSADd------LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS  234 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSADD------LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS  234 (433)
T ss_pred             ccceeEeeeeeecCccceEeeccc------eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence            678888999999999999998876      5899999764321   22222      234588899999643 333   5


Q ss_pred             cCeEEEEEcCCcee----eeEeec------------cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEE
Q 015650          193 EQKIFVYNFADLKL----LHQIET------------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFI  254 (403)
Q Consensus       193 d~~i~i~d~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~  254 (403)
                      .|+|++.|++...+    .+.+..            -...|..+.|+.+|+  |+++  ..--+|++||+..  +.+.+.
T Consensus       235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr--yils--RDyltvk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR--YILS--RDYLTVKLWDLNMEAKPVETY  310 (433)
T ss_pred             CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc--EEEE--eccceeEEEeccccCCcceEE
Confidence            89999999985321    111111            123455688888877  4554  2447899999854  666666


Q ss_pred             eecCC------------ce---EEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 015650          255 MAHDS------------RI---ACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (403)
Q Consensus       255 ~~~~~------------~i---~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~  291 (403)
                      +.|..            .|   ..++|+-++.++++|+.... .++|++..|
T Consensus       311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~-frvf~~~~g  361 (433)
T KOG1354|consen  311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNV-FRVFNLARG  361 (433)
T ss_pred             eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccce-EEEecCCCC
Confidence            65532            12   35789999999999999998 999996544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.10  E-value=1.2e-08  Score=85.37  Aligned_cols=250  Identities=11%  Similarity=0.138  Sum_probs=167.8

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      .......||.+.|+....-|-..-+.+.+ |..+|||--....+.. ..+......++.++.+..+...|+.+-+.    
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w-psI~~~mP~~~~~~~y~~e~~~L~vg~~n----   89 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW-PSIYHYMPSPCSAMEYVSESRRLYVGQDN----   89 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccC-chhhhhCCCCceEeeeeccceEEEEEEec----
Confidence            33456788999999887777666676666 5669999654333222 33332456788999999998888888877    


Q ss_pred             CceEEEEECCC----CceeEEEe-cCCceeEEEEecCceEEEe--cCeEEEEE-cCCceeeeEeeccCCCceeEEEeeCC
Q 015650          155 LNKVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYN-FADLKLLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       155 ~~~i~iwd~~~----~~~~~~~~-~~~~i~~~~~~~~~~~~~~--d~~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (403)
                       |++.-+.+..    ...++.+. |...+..+-|+....++++  -.+-..|- .+.+..+..+... .......+..  
T Consensus        90 -gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~--  165 (404)
T KOG1409|consen   90 -GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDA--  165 (404)
T ss_pred             -ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceee--
Confidence             8888886533    33444444 8899999999887777773  22233343 2333322211100 0000001100  


Q ss_pred             CeEEEEeeCCccCeEEEEEccC---CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE-EEecCCC
Q 015650          227 GSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ-EVRRGAD  302 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~---~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~-~~~~~~~  302 (403)
                         ..+..|...|.|.+-.+..   +.+..+.+|.+.+.+++|.+..++|.+|..|.. +.+||+.-.+-+. ++.+  |
T Consensus       166 ---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g--h  239 (404)
T KOG1409|consen  166 ---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG--H  239 (404)
T ss_pred             ---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc--c
Confidence               0222355556666554433   566778899999999999999999999999999 9999997554332 3333  7


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~  340 (403)
                      ...|..+..-+.-+.|.+++.||.|.+|+.+....+..
T Consensus       240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etp  277 (404)
T KOG1409|consen  240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETP  277 (404)
T ss_pred             hhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCc
Confidence            78899998888889999999999999999987765433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.09  E-value=3.3e-07  Score=75.36  Aligned_cols=227  Identities=11%  Similarity=0.120  Sum_probs=131.9

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEcCCCeeEE--EEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIF--RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        91 i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~  168 (403)
                      ++.+.||++||+-.|..|.|-..+..-...  ...+.....-.-..++|++|+..++.+...     |+|+++|+... .
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g~-~   76 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMGS-E   76 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEecccc-e
Confidence            577899999999999998887654322111  122333445567889999999999988888     99999997653 3


Q ss_pred             eEEEe--------cCCceeEEEEecCc-------eEEE--ecCeEEEEEcCC-----ceeeeEeec---cCCCceeEEEe
Q 015650          169 IGELS--------FRSEVRSVKLRRDR-------IIVV--LEQKIFVYNFAD-----LKLLHQIET---IANPKGLCAVS  223 (403)
Q Consensus       169 ~~~~~--------~~~~i~~~~~~~~~-------~~~~--~d~~i~i~d~~~-----~~~~~~~~~---~~~~~~~~~~~  223 (403)
                      +..+.        ....|..+.|.+-.       .+++  .+|.++-|-+..     .+..+.+..   ....+..+.++
T Consensus        77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence            33332        23456677775432       3333  577777666532     233444432   35577788888


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEE--EEEeCCCc-----EEEEEEcCCCcEEEE
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL--ATSSTKGT-----LVRIFNTLDGTLLQE  296 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l--~s~~~dg~-----~i~iwd~~~~~~~~~  296 (403)
                      +..+-  +..+|.....-..+          .+-...+++-..-.+..+.  ++...|+.     ...+|.+-+.+... 
T Consensus       157 p~h~L--LlVgG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-  223 (282)
T PF15492_consen  157 PKHRL--LLVGGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-  223 (282)
T ss_pred             CCCCE--EEEeccCCCCCccc----------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-
Confidence            77653  33345444321110          0111122222221111111  11222211     02344443332221 


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .. ......|..|..||||+.||+...+|.|.+|++.+-+.
T Consensus       224 ~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  224 RQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             cc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            11 12457899999999999999999999999999988764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.06  E-value=1e-09  Score=109.25  Aligned_cols=195  Identities=13%  Similarity=0.205  Sum_probs=147.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ...+-..|.++.=+|...+.++|+.++ |++|....++.++.....  ....++.+.|+.+|..+..+..|     |.+.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~qGnk~~i~d~d-----g~l~ 2276 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNHQGNKFGIVDGD-----GDLS 2276 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc--CcchhhhhhhcccCCceeeeccC-----Ccee
Confidence            344567788888899889999988555 999999888877555443  44899999999999998888888     9999


Q ss_pred             EEECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCC---ceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      +|.+. .++....+ |.....++.|-.....-+    .++.+.+||..-   ..++.  ..|.+..+++++.|...  ++
T Consensus      2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--ll 2351 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LL 2351 (2439)
T ss_pred             ecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EE
Confidence            99976 45555555 888888888877333322    266899999543   12333  67888899999998754  44


Q ss_pred             EeeCCccCeEEEEEccCCceeE-EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          232 VCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      .+ |+.+|.|++||++..+++. ++.         ++ ...++++|+..|. |+||++.....+.++..
T Consensus      2352 is-ggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2352 IS-GGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             Ee-cCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence            44 5699999999998855432 222         44 5678999999999 99999988877777764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.05  E-value=3.6e-07  Score=83.36  Aligned_cols=220  Identities=17%  Similarity=0.179  Sum_probs=132.5

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (403)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~  175 (403)
                      +..+.+++ ++.|..+|..+++......+.....   ...... ++..++ ++.+     +.++.+|..+|+.+......
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~v~-~~~v~v-~~~~-----g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVGAD-GGLVFV-GTEK-----GEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceEEc-CCEEEE-EcCC-----CEEEEEECCCCcEeeeeccC
Confidence            44555555 5559999988888877666642111   122222 333333 3344     89999999999988777644


Q ss_pred             CceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCc-----eeEEEeeCCCeEEEEeeCCccCeEEEEEccC
Q 015650          176 SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~  248 (403)
                      ..+.+.-...++.+++  .++.|+.||.++|+.+..+.......     ....+ . ++.+ ++  +..++.+..+|.++
T Consensus       135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~-~~~v-~~--~~~~g~v~ald~~t  209 (377)
T TIGR03300       135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-A-DGGV-LV--GFAGGKLVALDLQT  209 (377)
T ss_pred             ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-E-CCEE-EE--ECCCCEEEEEEccC
Confidence            4433222223455555  58899999999999887765433211     11111 1 2332 22  34678999999888


Q ss_pred             CceeEEeecCC-----c---eEEEEEcC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 015650          249 KRTKFIMAHDS-----R---IACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (403)
Q Consensus       249 ~~~~~~~~~~~-----~---i~~~~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l  318 (403)
                      ++..-......     .   ...+.-+|  .+..++.++.+|. ++.||.++|+.+-.....    ....+.  .++..|
T Consensus       210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~v  282 (377)
T TIGR03300       210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRL  282 (377)
T ss_pred             CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEE
Confidence            66432111000     0   00011111  3557778888999 999999999887655421    112222  256778


Q ss_pred             EEEeCCCcEEEEEeecCCCC
Q 015650          319 AVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       319 ~s~~~dg~v~iwd~~~~~~~  338 (403)
                      ++++.+|.|+.+|..+++..
T Consensus       283 yv~~~~G~l~~~d~~tG~~~  302 (377)
T TIGR03300       283 YVTDADGVVVALDRRSGSEL  302 (377)
T ss_pred             EEECCCCeEEEEECCCCcEE
Confidence            88889999999999988754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.04  E-value=1.1e-07  Score=77.03  Aligned_cols=191  Identities=10%  Similarity=0.013  Sum_probs=124.0

Q ss_pred             CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCcee---EEEEecCceEEE-ecCeEEEEEcCCceeeeEeecc
Q 015650          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVR---SVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETI  213 (403)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~---~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~  213 (403)
                      ....++.++..     |...+|...+.+....+.  +...|.   ..+-+.-..+++ .|.++++.++.-+.....+...
T Consensus        83 kc~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~  157 (344)
T KOG4532|consen   83 KCVTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ  157 (344)
T ss_pred             cccEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence            45567777776     999999988665433322  333322   223333334444 4788888887654332222211


Q ss_pred             CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee----EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~----~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      .-....+.++++++  ++++.| ....|..|.++.....    ........-.+..|+.....+|++..||+ +.|||++
T Consensus       158 ~~~~ns~~~snd~~--~~~~Vg-ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR  233 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPS--WGSSVG-DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVR  233 (344)
T ss_pred             ccceeeeEEcCCCc--eEEEec-CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEec
Confidence            12256778888877  455556 6678888888763322    22233445578899999999999999999 9999998


Q ss_pred             CCcEEEEE---ecCCCcccEEEEEeCCCCC--EEEEEeCCCcEEEEEeecCCCCC
Q 015650          290 DGTLLQEV---RRGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       290 ~~~~~~~~---~~~~~~~~v~~l~~s~d~~--~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      ........   ....|.+.+..+.|++-|.  +|...-.-+.+.+-|+++.+...
T Consensus       234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            75433222   1233889999999998664  45555566789999999988643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.03  E-value=4.9e-09  Score=86.45  Aligned_cols=240  Identities=12%  Similarity=0.233  Sum_probs=151.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee---EEEEecccCc------------ceeEEEEeeeC---CeEEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---IFRRDFERGG------------GIGVVEMLFRC---NILAL  144 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~---~~~~~~~~~~------------~~~v~~~~~~~---~~~~~  144 (403)
                      ..+.|+++.|...|.+|++|..+| |.+|.-+....   .+...++ +|            ...|..+.|-.   ...++
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            456799999999999999998777 88887543321   1111222 12            23455555533   23455


Q ss_pred             eeCCCCCCCCCceEEEEECCCCc-------------------------------------ee-----EEEe--cCCceeE
Q 015650          145 VGGGPDPQYPLNKVMIWDDHQSR-------------------------------------CI-----GELS--FRSEVRS  180 (403)
Q Consensus       145 ~s~~~d~~~~~~~i~iwd~~~~~-------------------------------------~~-----~~~~--~~~~i~~  180 (403)
                      +++.+      .+|++|.+....                                     .+     +.+.  |...|.+
T Consensus       104 lstNd------ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170         104 LSTND------KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             EecCC------ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence            55543      799999864320                                     00     1121  5566788


Q ss_pred             EEEecCceEEE-e-cCeEEEEEcCCce-ee--eEeecc-----CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc
Q 015650          181 VKLRRDRIIVV-L-EQKIFVYNFADLK-LL--HQIETI-----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (403)
Q Consensus       181 ~~~~~~~~~~~-~-d~~i~i~d~~~~~-~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~  250 (403)
                      +.++.|...+. . |=.|.+|++.-.. ..  ..++.+     ..-++...|+|.....++.+  +..|.|++-|++...
T Consensus       178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS--sSkG~Ikl~DlRq~a  255 (460)
T COG5170         178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS--SSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe--cCCCcEEehhhhhhh
Confidence            99998877766 3 5578999886421 11  112221     22456677888776666554  467999999998522


Q ss_pred             -----eeE------------EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEecCC----------C
Q 015650          251 -----TKF------------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGA----------D  302 (403)
Q Consensus       251 -----~~~------------~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~----------~  302 (403)
                           ...            +..-...|..+.|+++|+|+++-..- + |+|||++.. .++.++..+.          .
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~~l~d~YE  333 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMDELNDVYE  333 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHHHHHhhhh
Confidence                 111            12233568899999999999876554 4 999999764 4566664210          0


Q ss_pred             cccE---EEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          303 RAEI---YSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       303 ~~~v---~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      ...|   ..+.||-|.+.+++|+..+...||-+.+
T Consensus       334 nDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         334 NDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             ccceeeeEEEEecCCcccccccccccceeeecccc
Confidence            1222   3578898999999998888777776443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.00  E-value=1.1e-06  Score=74.57  Aligned_cols=214  Identities=16%  Similarity=0.167  Sum_probs=129.9

Q ss_pred             CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEec
Q 015650          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR  185 (403)
Q Consensus       106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~  185 (403)
                      +.|..||..+++.+....+. .............++..++. +.+     +.|..||..+|+.+..+.....+.......
T Consensus         3 g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~-~~~-----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVA-SGD-----GNLYALDAKTGKVLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             SEEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEE-ETT-----SEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred             CEEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEE-cCC-----CEEEEEECCCCCEEEEeeccccccceeeec
Confidence            44888998888888777664 21222232233234444444 233     899999999999988888544433322334


Q ss_pred             CceEE-E-ecCeEEEEEcCCceeeeEe-eccCC---CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE-EeecC
Q 015650          186 DRIIV-V-LEQKIFVYNFADLKLLHQI-ETIAN---PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD  258 (403)
Q Consensus       186 ~~~~~-~-~d~~i~i~d~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~-~~~~~  258 (403)
                      ++.++ . .++.|+.+|..+|+.+..+ .....   ..........++.+++..   .++.|..+|.++++..- .....
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCC
Confidence            44444 4 4789999999999998884 32211   112233334456555443   47999999999876633 22222


Q ss_pred             Cc----------eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEE
Q 015650          259 SR----------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (403)
Q Consensus       259 ~~----------i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~  328 (403)
                      ..          +..-....++ .++.++.++..+.+ |+.+++.+-...    ...+..+ ...++..|+.++.++.|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~----~~~~~~~-~~~~~~~l~~~~~~~~l~  225 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP----ISGIYSL-PSVDGGTLYVTSSDGRLY  225 (238)
T ss_dssp             T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC----SS-ECEC-EECCCTEEEEEETTTEEE
T ss_pred             CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec----CCCccCC-ceeeCCEEEEEeCCCEEE
Confidence            11          1122222345 67777777752455 999999663222    1223331 346778888888999999


Q ss_pred             EEEeecCC
Q 015650          329 VFNLKVNS  336 (403)
Q Consensus       329 iwd~~~~~  336 (403)
                      .||+++++
T Consensus       226 ~~d~~tG~  233 (238)
T PF13360_consen  226 ALDLKTGK  233 (238)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCC
Confidence            99999998

...

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=9.4e-08  Score=88.30  Aligned_cols=236  Identities=13%  Similarity=0.065  Sum_probs=165.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC------------CeEEEeeCCCCCCCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC------------NILALVGGGPDPQYP  154 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~s~~~d~~~~  154 (403)
                      .-.++.|+|.| ++|.|+..-|.|-|..+.+.+  ..++ .|...|+.+.|.|            -...+++++..    
T Consensus        17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q~i--qsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~----   88 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLI--QSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS----   88 (1062)
T ss_pred             cccccccCccc-eEEEecCceEEEEehhhhhhh--hccc-cCccceeEEEeccCCCchhccCccccceeEEecccc----
Confidence            35678898865 888998888999997766655  5665 6888899988865            23567788877    


Q ss_pred             CceEEEEECCCCceeEEEe-cCCceeEEEEecC---c-eEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC
Q 015650          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---R-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~---~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (403)
                       |.|.+||...+..+..+. +..++..++|-+.   . .+++   ...++.+|+..+|+.+...........++.+.|-+
T Consensus        89 -GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   89 -GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD  167 (1062)
T ss_pred             -CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence             999999999999888888 7788999999763   3 2333   47799999999999988877666666677787755


Q ss_pred             CeEEEEeeCCccCeEEEEEccC--------CceeEEeecCC-------------------------ceEEEEEcCCCCEE
Q 015650          227 GSLVLVCPGLQKGQVRVEHYAS--------KRTKFIMAHDS-------------------------RIACFALTQDGQLL  273 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~--------~~~~~~~~~~~-------------------------~i~~~~~sp~g~~l  273 (403)
                      ...+.+. | ..|.+.+-+.-.        ++.+....|..                         ....++|+|.-+.+
T Consensus       168 ~rh~~~l-~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  168 SRHFCVL-G-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             cceEEEE-c-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence            4433333 3 456666655432        11222122221                         01124678876666


Q ss_pred             EEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC--EEEEEeCCCcEEEEEeecCC
Q 015650          274 ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       274 ~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~--~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +....... +.|+|++-..++..+...  .+.+.-+.+-|+++  .|.+.-.||.+.||--+...
T Consensus       246 lfi~~pre-llv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  246 LFITFPRE-LLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             EEEEeccc-eEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            55666667 999999888888777652  34455566666665  68899999999999877643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.96  E-value=1.6e-07  Score=77.06  Aligned_cols=240  Identities=10%  Similarity=0.081  Sum_probs=150.1

Q ss_pred             CCCeEEEEEcC---CCC-EEEEEc-CCcEEEEEcCCCeeE-EEEecccCcc---eeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           85 PPTLLHISFNQ---DHG-CFAAGT-DHGFRIYNCDPFREI-FRRDFERGGG---IGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        85 ~~~i~~i~~s~---d~~-~l~~~~-~~~i~iw~~~~~~~~-~~~~~~~~~~---~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ...+..|.|..   +|. .++-+. .+.|.+|..+..... ..+.+. ...   ....++.|++.+..++++..+     
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-~~ki~~~~~lslD~~~~~~~i~vs~s~-----  142 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-SKKISVVEALSLDISTSGTKIFVSDSR-----  142 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc-hhhhhheeeeEEEeeccCceEEEEcCC-----
Confidence            34566667753   445 334444 444888876543322 112222 111   124567788877777777777     


Q ss_pred             ceEEEEECCCCcee--EEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcC-CceeeeE-eeccCCCceeEEEeeCC
Q 015650          156 NKVMIWDDHQSRCI--GELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFA-DLKLLHQ-IETIANPKGLCAVSQGV  226 (403)
Q Consensus       156 ~~i~iwd~~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~-~~~~~~~-~~~~~~~~~~~~~~~~~  226 (403)
                      |.+.+-+.......  +..+ |+.++....|+....-++    -|+.+..||++ .++.+.. .+.|...|.++.-+|..
T Consensus       143 G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~  222 (339)
T KOG0280|consen  143 GSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPK  222 (339)
T ss_pred             CcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCC
Confidence            88886665555433  3566 888999999987655444    38899999998 3444433 45566666666666553


Q ss_pred             CeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCCcEE-----EEEe
Q 015650          227 GSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDGTLL-----QEVR  298 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~--g~~l~s~~~dg~~i~iwd~~~~~~~-----~~~~  298 (403)
                      . .++++ |+.|..|++||.++ ++...-..-.+.|..+..+|.  +++|+++-.+|  .+|-+...+...     ...+
T Consensus       223 ~-~~I~T-GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G--~ki~~~~~~~~e~~~~~~s~~  298 (339)
T KOG0280|consen  223 P-TYIAT-GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG--AKILDSSDKVLEFQIVLPSDK  298 (339)
T ss_pred             C-ceEEE-eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC--ceEEEecccccchheeeeccc
Confidence            3 34554 78999999999996 333333334588999999983  45566666666  688887654322     2222


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEe-CCCcEE-EEEeecCC
Q 015650          299 RGADRAEIYSLAFSSNAQWLAVSS-DKGTVH-VFNLKVNS  336 (403)
Q Consensus       299 ~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~-iwd~~~~~  336 (403)
                        .|.+-+..-.|......|++++ .|+.++ +|-.-+++
T Consensus       299 --~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  299 --IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             --cccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence              2555666667755556788876 677755 88776665

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=1.3e-09  Score=96.58  Aligned_cols=204  Identities=16%  Similarity=0.196  Sum_probs=145.8

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC-------ceeEEEe-cCCceeEEEEecCceEEE-e
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVV-L  192 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~-------~~~~~~~-~~~~i~~~~~~~~~~~~~-~  192 (403)
                      ..+. +|...|..+.--.+...+++++.|     ++|++|.++..       .+..+++ |..+|.++.|-.+.++++ .
T Consensus       729 ~nf~-GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc  802 (1034)
T KOG4190|consen  729 CNFT-GHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC  802 (1034)
T ss_pred             eccc-CcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence            4454 788888888777777788999999     99999998642       3445555 999999999999999888 7


Q ss_pred             cCeEEEEEcCCceeeeEeec--cCCCceeEEEeeC-CCeEEEEeeCCccCeEEEEEccCCce----eEE--eecCCceEE
Q 015650          193 EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQG-VGSLVLVCPGLQKGQVRVEHYASKRT----KFI--MAHDSRIAC  263 (403)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~g~~d~~i~v~d~~~~~~----~~~--~~~~~~i~~  263 (403)
                      |+.|.+||.--++.+..+..  ..+.+..+..-++ ...++++ ..+...+|+++|.+....    +.-  .+....+.+
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliA-gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIA-GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheee-eccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence            99999999877776654422  1223333333343 3444333 235678999999887432    222  234566899


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEE-EEeecCC
Q 015650          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV-FNLKVNS  336 (403)
Q Consensus       264 ~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~i-wd~~~~~  336 (403)
                      ++..+.|+.++.+-.+|. |.+.|.++|+.+..++..  ......++- |..+.|+....|.++.+ |..-.+.
T Consensus       882 iaVa~~GN~lAa~LSnGc-i~~LDaR~G~vINswrpm--ecdllqlaa-psdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  882 IAVADKGNKLAAALSNGC-IAILDARNGKVINSWRPM--ECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             EEeccCcchhhHHhcCCc-EEEEecCCCceeccCCcc--cchhhhhcC-chhHHHHhhcccceeEeeehhcCCe
Confidence            999999999999999999 999999999998877742  223333432 55567777777888888 8765543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.94  E-value=2.8e-07  Score=74.78  Aligned_cols=236  Identities=15%  Similarity=0.140  Sum_probs=136.1

Q ss_pred             EEEEEcCC-----CCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEE
Q 015650           89 LHISFNQD-----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        89 ~~i~~s~d-----~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      ..|.|.|-     ..+||.|+..+ +.+|...+.+.... ... .+...|.-..-..+ ..-+.-++.|     .++++.
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~-~cd-~snn~v~~~~r~cd~~~~~~i~snd-----ht~k~~  143 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY-QCD-VSNNDVTLVKRYCDLKFPLNIASND-----HTGKTM  143 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCccccee-eec-ccccchhhhhhhcccccceeeccCC-----cceeEE
Confidence            34566553     35677776544 99999987665432 222 23332222111111 1112233344     677777


Q ss_pred             ECCCCceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcCC-ceeeeEeecc--CCCceeEEEeeCCCeEEEEee
Q 015650          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-LKLLHQIETI--ANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      ++.-+.....+. ..-.+..+.+++|+++++.   ...|..|.+.. ++.+..+...  .+.-.+..|+...  ..+|+ 
T Consensus       144 ~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~--~~FAv-  220 (344)
T KOG4532|consen  144 VVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND--LQFAV-  220 (344)
T ss_pred             EEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc--ceEEE-
Confidence            765543332222 1134788999999999883   45788888865 3333222222  2222344444444  44454 


Q ss_pred             CCccCeEEEEEccCCce------eEEeecCCceEEEEEcCCCC--EEEEEeCCCcEEEEEEcCCCcEEEEEecCCC----
Q 015650          235 GLQKGQVRVEHYASKRT------KFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----  302 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~------~~~~~~~~~i~~~~~sp~g~--~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~----  302 (403)
                      +..||.+.|||++....      ..-..|.+.+..+.|++-|.  +|...-.-+. +.|.|+++++..+.+.....    
T Consensus       221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~  299 (344)
T KOG4532|consen  221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERK  299 (344)
T ss_pred             EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCcccccc
Confidence            45999999999997332      22345899999999998553  4444444556 99999999876665543211    


Q ss_pred             -c-ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          303 -R-AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       303 -~-~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                       . ..|..-.|+.++.-+.+.+++ .+.=|++.+..
T Consensus       300 ~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  300 HNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             ccccccccccccCCCcccccccch-hhheeeccccc
Confidence             1 236666777777666655544 35556665544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.94  E-value=5.9e-09  Score=95.47  Aligned_cols=194  Identities=12%  Similarity=0.120  Sum_probs=133.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC---eEEEeeCCCCCCCCCceEEEE
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      .+.+.++.++|.|+-+|.++..++.+-|++..-... +-+..-..-.+....|++.   ...+++.+.      ..-.+|
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkaiiw   96 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAIIW   96 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEEeccCCCCCc-eeeeccCcchhcceecccCCCCceeEEecCc------chhhhh
Confidence            456788899999999999999998888886322111 1221012223444455442   345666665      456788


Q ss_pred             ECCCC--ceeEEEe--cCCceeEEEEecCceEEE----ecCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          162 DDHQS--RCIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       162 d~~~~--~~~~~~~--~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      ++...  +.+.-+.  |...|+++.|+++..-+.    .|-.+..||++.. ..+..+.........+.|+...... ++
T Consensus        97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v-la  175 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV-LA  175 (1081)
T ss_pred             hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcch-hh
Confidence            87543  3333333  788999999999876544    4889999999874 4566666566666788888876654 34


Q ss_pred             eeCCccCeEEEEEccCC--ceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcC
Q 015650          233 CPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      .  +..+.|.+||++.+  .+..+++|...|..+.|.. --..+.+++.|++ |++||..
T Consensus       176 s--shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~  232 (1081)
T KOG0309|consen  176 S--SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYS  232 (1081)
T ss_pred             h--ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeeccc
Confidence            3  45688999999874  4566778888899998875 2345778899999 9999873

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=2.2e-07  Score=85.28  Aligned_cols=229  Identities=10%  Similarity=0.095  Sum_probs=146.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      .++.+|...|.-+.|+...+.|.+...+| |.||-+-.+.-.. .-+.......|.+++|+.+|..++..-.|     |.
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E-EMiNnRnKSvV~SmsWn~dG~kIcIvYeD-----Ga  138 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE-EMINNRNKSVVVSMSWNLDGTKICIVYED-----GA  138 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH-HHhhCcCccEEEEEEEcCCCcEEEEEEcc-----CC
Confidence            56889999999999999999999988777 9999876554321 11222356788999999998887777777     88


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc-------eeeeEe----eccCCCceeEEE
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-------KLLHQI----ETIANPKGLCAV  222 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~-------~~~~~~----~~~~~~~~~~~~  222 (403)
                      |.+=.++..+ +.--. .......+.|++|...+.   .+|.+.+||....       .+....    ......+..+.|
T Consensus       139 vIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w  217 (1189)
T KOG2041|consen  139 VIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW  217 (1189)
T ss_pred             EEEEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence            7776654332 21111 122345789999987665   6899999996532       111111    111122333333


Q ss_pred             e--------eCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCc--------EEEEE
Q 015650          223 S--------QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--------LVRIF  286 (403)
Q Consensus       223 ~--------~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~--------~i~iw  286 (403)
                      .        |+...+.++.   .+|.+.+..-.+...-.+....-.+..+.|+++|..|+.++.+..        .|.+|
T Consensus       218 ~~g~~~~v~pdrP~lavcy---~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy  294 (1189)
T KOG2041|consen  218 NTGPYQPVPPDRPRLAVCY---ANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY  294 (1189)
T ss_pred             ccCccccCCCCCCEEEEEE---cCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence            2        2334333333   567777766555333233333467889999999999999887531        16666


Q ss_pred             EcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 015650          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (403)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s  320 (403)
                      . .-|+.+.+++.  ....|+++.|-..|-.++.
T Consensus       295 s-p~G~i~gtlkv--pg~~It~lsWEg~gLriA~  325 (1189)
T KOG2041|consen  295 S-PYGHIVGTLKV--PGSCITGLSWEGTGLRIAI  325 (1189)
T ss_pred             c-cchhheEEEec--CCceeeeeEEcCCceEEEE
Confidence            4 45777888875  3467888888766554443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.85  E-value=3.7e-06  Score=72.24  Aligned_cols=242  Identities=14%  Similarity=0.121  Sum_probs=145.5

Q ss_pred             EEEEcCCCCEEEEEc---------CCc--EEEEEcCCCeeEEEEecccCcceeE----EEEeeeCCeEEEeeCCCCCCCC
Q 015650           90 HISFNQDHGCFAAGT---------DHG--FRIYNCDPFREIFRRDFERGGGIGV----VEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~---------~~~--i~iw~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      .+..+||++.+.++.         +++  |.+||..+.....+..+...+...+    ..+.++.++.++....-.|   
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP---  116 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP---  116 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS---
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC---
Confidence            467899999887653         112  8999999988776666652212111    1223444444433322221   


Q ss_pred             CceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcC-CceeeeEe----eccCCCce-eEEEeeCCC
Q 015650          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFA-DLKLLHQI----ETIANPKG-LCAVSQGVG  227 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~-~~~~~~~~----~~~~~~~~-~~~~~~~~~  227 (403)
                      ...|.|.|+..++.+.++.-.+...-.-.-+++.... .||++.-..+. .|+..+..    .....++. .-++...+.
T Consensus       117 a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~  196 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG  196 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred             CCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence            1678888888888888887666554444444543333 69998888887 45543222    11122221 234444555


Q ss_pred             eEEEEeeCCccCeEEEEEccCCceeEEee-------------cCCceEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSSTK---------GTLVRI  285 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-------------~~~~i~~~~~sp~g~~l~s~~~d---------g~~i~i  285 (403)
                      .+++.+   ..|.|+-.|+..........             ..+.-.-+++++..++|+..-..         ++.|.+
T Consensus       197 ~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  197 RLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             EEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             eEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            666654   77999999988755433211             11233457888766666653321         124999


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEE-eCCCcEEEEEeecCCCCCC
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVS-SDKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~-~~dg~v~iwd~~~~~~~~~  340 (403)
                      +|+.+++.+..+..   ...+.+|+.+.|.+ +|++. ..++.|.+||..+++.+.+
T Consensus       274 ~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  274 YDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             EETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             EECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence            99999999999984   35688999998877 55554 4688999999999985433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.84  E-value=6.3e-06  Score=70.02  Aligned_cols=199  Identities=16%  Similarity=0.096  Sum_probs=131.4

Q ss_pred             EEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCc--eeEEEEecCceEEEe--------cCeEEEEEc
Q 015650          134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE--VRSVKLRRDRIIVVL--------EQKIFVYNF  201 (403)
Q Consensus       134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~--i~~~~~~~~~~~~~~--------d~~i~i~d~  201 (403)
                      .++.+| ....++-+-+-    .....+||..+++....+. ..+.  --.-.|++||.++++        .|.|-|||.
T Consensus         9 ~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            445555 34444444332    1568899999999888776 2222  225789999999882        568999999


Q ss_pred             C-CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc---------------cCeEEEEEccCCceeE---E--eecCCc
Q 015650          202 A-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ---------------KGQVRVEHYASKRTKF---I--MAHDSR  260 (403)
Q Consensus       202 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------d~~i~v~d~~~~~~~~---~--~~~~~~  260 (403)
                      . +.+.+.++..+.-.-..+.+.++++.++++-.|-.               +..+.+.|..++.+..   +  .-|...
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence            8 56778888776655567888999988877754311               1233344444544322   3  336778


Q ss_pred             eEEEEEcCCCCEEEEEeCCCc------EEEEEEcCCCcEEEEEecC-----CCcccEEEEEeCCCCCEEEEEe-CCCcEE
Q 015650          261 IACFALTQDGQLLATSSTKGT------LVRIFNTLDGTLLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTVH  328 (403)
Q Consensus       261 i~~~~~sp~g~~l~s~~~dg~------~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l~~s~d~~~l~s~~-~dg~v~  328 (403)
                      |..+++.++|..++..-..|.      .|-+++  .++.+..+...     ...+.+-+|+++.++.++++.+ ..+.+.
T Consensus       165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             eeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence            999999999987765544442      144444  33333333321     1236799999999999886666 788999


Q ss_pred             EEEeecCCCC
Q 015650          329 VFNLKVNSGS  338 (403)
Q Consensus       329 iwd~~~~~~~  338 (403)
                      +||..+++-.
T Consensus       243 ~~d~~tg~~~  252 (305)
T PF07433_consen  243 VWDAATGRLL  252 (305)
T ss_pred             EEECCCCCEe
Confidence            9999999853

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.80  E-value=1.8e-07  Score=75.53  Aligned_cols=176  Identities=16%  Similarity=0.188  Sum_probs=108.8

Q ss_pred             EEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCce-----eEEEEecCceEEE--------ecCeEEEEEcCCceeee
Q 015650          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV-----RSVKLRRDRIIVV--------LEQKIFVYNFADLKLLH  208 (403)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~  208 (403)
                      .-++.+..|     |.+.+++.+.-   ..+.+..++     .+.++...+.++.        .-+..++|+++..+.+.
T Consensus       102 t~V~~~~~d-----g~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~  173 (319)
T KOG4714|consen  102 NRVCIGYAD-----GSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI  173 (319)
T ss_pred             CceEecCCC-----ceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence            346677777     99999986652   222222211     1222223333333        24466777776543322


Q ss_pred             EeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 015650          209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRI  285 (403)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~i  285 (403)
                      .-......+..++-+|..++++  +.|+.||.+-+||.+..  ....+..|+.+|..+-|+| ++..|+++++||. +.-
T Consensus       174 ~~~~~~~~v~~l~~hp~qq~~v--~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~  250 (319)
T KOG4714|consen  174 PSKKALDAVTALCSHPAQQHLV--CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWH  250 (319)
T ss_pred             ccccccccchhhhCCcccccEE--EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEE
Confidence            2222233477788888776543  34679999999999884  3455788999999999999 7788999999999 999


Q ss_pred             EEcCCCcEEEE---------------------EecC--CCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          286 FNTLDGTLLQE---------------------VRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       286 wd~~~~~~~~~---------------------~~~~--~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      ||..+ +.+..                     +..-  .....|++  |.--|..|++|++-+.|++++
T Consensus       251 wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  251 WDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence            99753 22210                     0000  00012222  334577899999888888875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=2.6e-08  Score=88.49  Aligned_cols=236  Identities=12%  Similarity=0.211  Sum_probs=157.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe-----eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (403)
                      ..+.+|.+.|..++--.+..-+++++ |++|++|.+.+..     ..+..++. .|...|.++.|-.+...+++++    
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~ScD----  803 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASCD----  803 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeecc----
Confidence            45889999999987766666666665 7779999986432     22445665 7899999999999999999887    


Q ss_pred             CCCceEEEEECCCCceeEEEe---cCCceeEEEEec--CceEEE----ecCeEEEEEcCCceeeeEeecc-----CCCce
Q 015650          153 YPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRR--DRIIVV----LEQKIFVYNFADLKLLHQIETI-----ANPKG  218 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~--~~~~~~----~d~~i~i~d~~~~~~~~~~~~~-----~~~~~  218 (403)
                         |-|.+||.--++++..+.   ..+.+..+..-+  +..++.    ...+|+++|.+..+...+++..     ..-+.
T Consensus       804 ---~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  804 ---GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             ---CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence               789999988888776554   233444444444  333333    4789999999988766666543     23456


Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE-EEcCCCcEEEE
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI-FNTLDGTLLQE  296 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i-wd~~~~~~~~~  296 (403)
                      ++++.+.|+.+..+   -.+|.|.+.|.+++.+ ..+.........++ .|..+.|+....|.+ +.| |...++.....
T Consensus       881 ~iaVa~~GN~lAa~---LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgimh~q  955 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAA---LSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIMHLQ  955 (1034)
T ss_pred             EEEeccCcchhhHH---hcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCeeeec
Confidence            88888888865433   4679999999998774 33443333333333 356667887778888 888 98777766555


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      .+...  .+..-  ...-|.-|+++.....+.+|.
T Consensus       956 ~kppp--epahf--lqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  956 DKPPP--EPAHF--LQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             cCCCC--cchhh--hhccCceeEEeccCcEEEEEe
Confidence            44321  11111  112355677776666677764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.75  E-value=1.8e-07  Score=77.40  Aligned_cols=199  Identities=13%  Similarity=0.206  Sum_probs=124.8

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-----eeEEEe-------------cCCceeEEEEecCc--
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELS-------------FRSEVRSVKLRRDR--  187 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-----~~~~~~-------------~~~~i~~~~~~~~~--  187 (403)
                      ....|+++.|...|.++++|+..     |.|.+|.-....     ...+++             -...|..+.|-.++  
T Consensus        25 ead~ItaVefd~tg~YlatGDkg-----GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r   99 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKG-----GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR   99 (460)
T ss_pred             ccceeeEEEeccccceEeecCCC-----ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence            45678899999999999999998     999999754332     111122             23457788887653  


Q ss_pred             -eEEE--ecCeEEEEEcCCcee--e-------------------------eEe----------------eccCCCceeEE
Q 015650          188 -IIVV--LEQKIFVYNFADLKL--L-------------------------HQI----------------ETIANPKGLCA  221 (403)
Q Consensus       188 -~~~~--~d~~i~i~d~~~~~~--~-------------------------~~~----------------~~~~~~~~~~~  221 (403)
                       .+++  .|.+|++|.+.....  +                         ..+                ..|.-.+..+.
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS  179 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence             3444  488999998764310  0                         000                11122223344


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccC--Cc--eeEEeecC-----CceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCC
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS--KR--TKFIMAHD-----SRIACFALTQDG-QLLATSSTKGTLVRIFNTLDG  291 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~--~~~~~~~~-----~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~  291 (403)
                      +..+..  .+.+  ..|-.|.+|++.-  +.  +.-+++|.     .-|++..|+|.. ..+...+..|. |++-|++..
T Consensus       180 ~NsD~e--t~lS--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~  254 (460)
T COG5170         180 FNSDKE--TLLS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQS  254 (460)
T ss_pred             ecCchh--eeee--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhh
Confidence            444433  3333  3678899998875  32  23344453     358889999953 45566777888 999999732


Q ss_pred             c------EEEE--EecCC------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          292 T------LLQE--VRRGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       292 ~------~~~~--~~~~~------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .      .+..  +.+-.      -...|..+.|+++|+++++-. =-+|+|||++..+.
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~  313 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN  313 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC
Confidence            1      1111  11100      124688899999999998865 45899999998774

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.75  E-value=4.1e-08  Score=56.91  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=35.4

Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      ++++.++.+  |...|++|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357778886  779999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.74  E-value=8.3e-06  Score=74.78  Aligned_cols=221  Identities=11%  Similarity=0.094  Sum_probs=127.5

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcce--------eE-EEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI--------GV-VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      ..+.+++ ++.+.-+|.++++......+. ....        .+ ..+.... +..++. ..+     +.++-+|.++|+
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~v~~-~~v~v~-~~~-----g~l~ald~~tG~  141 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLS-EKDGWFSKNKSALLSGGVTVAG-GKVYIG-SEK-----GQVYALNAEDGE  141 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCC-CcccccccccccccccccEEEC-CEEEEE-cCC-----CEEEEEECCCCC
Confidence            3444444 455888888888877766664 1100        00 0122222 333333 344     899999999999


Q ss_pred             eeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCc-----eeEEEeeCCCeEEEEeeCCccCe
Q 015650          168 CIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       168 ~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      .+...+....+.+--.-.++.+++  .++.++.+|.++|+.+..+.......     ....+  .++.+++.   ..++.
T Consensus       142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~---~~~g~  216 (394)
T PRK11138        142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVG---GDNGR  216 (394)
T ss_pred             CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEE---cCCCE
Confidence            988877444333211122555555  47899999999999988775431110     11111  12333332   35788


Q ss_pred             EEEEEccCCceeEEeecCC--------ceEEEEEcC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          241 VRVEHYASKRTKFIMAHDS--------RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       241 i~v~d~~~~~~~~~~~~~~--------~i~~~~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      +..+|..+++..-......        ....+.-+|  .+..++.++.+|. +..+|..+|+.+-.....    ....+.
T Consensus       217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~  291 (394)
T PRK11138        217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFA  291 (394)
T ss_pred             EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcE
Confidence            8888887765422111000        011111222  3456777778898 999999999876554321    111222


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      .  ++..|+.++.+|.|+.+|..+++..
T Consensus       292 ~--~~~~vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        292 V--DGGRIYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             E--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence            2  4667778888999999999988753

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.74  E-value=6.2e-06  Score=80.46  Aligned_cols=236  Identities=13%  Similarity=0.125  Sum_probs=135.1

Q ss_pred             EEEEcCCCCEEEEEcCCc---EEEEEcCCCee---EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           90 HISFNQDHGCFAAGTDHG---FRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~~~~---i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      +...+|.-..++++...+   +.++.+.....   .............|.++.|..+...++-+...     |.|.+-|.
T Consensus        23 ~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~   97 (1265)
T KOG1920|consen   23 AFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITAL-----GDIILVDP   97 (1265)
T ss_pred             heeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecC-----CcEEEEcc
Confidence            334445544555553222   55555533222   11111112334688999987765554444444     88888887


Q ss_pred             CCCceeEEEecCCceeEEEEecCceEEE--e-cCeEEEEEcCCc------------------------eeeeEeeccCC-
Q 015650          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADL------------------------KLLHQIETIAN-  215 (403)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-d~~i~i~d~~~~------------------------~~~~~~~~~~~-  215 (403)
                      .+......=.-...|.+++|+||+.+++  + .+++.+.+ .+.                        +.-..|.+..+ 
T Consensus        98 et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr  176 (1265)
T KOG1920|consen   98 ETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGR  176 (1265)
T ss_pred             cccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhccccccccccccccceecccccceeeecchhh
Confidence            7765443333678999999999998888  2 23444332 111                        11112221111 


Q ss_pred             --------------------CceeEEEeeCCCeEEEEeeC---Ccc-CeEEEEEccCCceeE-EeecCCceEEEEEcCCC
Q 015650          216 --------------------PKGLCAVSQGVGSLVLVCPG---LQK-GQVRVEHYASKRTKF-IMAHDSRIACFALTQDG  270 (403)
Q Consensus       216 --------------------~~~~~~~~~~~~~~~~~~~g---~~d-~~i~v~d~~~~~~~~-~~~~~~~i~~~~~sp~g  270 (403)
                                          .-..++|..||+  ++++++   ..+ ..|++||-+. .+.. -....+.-.+++|-|.|
T Consensus       177 ~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~--~fAVs~~~~~~~~RkirV~drEg-~Lns~se~~~~l~~~LsWkPsg  253 (1265)
T KOG1920|consen  177 QAARQKIEKEKALEQIEQDDHKTSISWRGDGE--YFAVSFVESETGTRKIRVYDREG-ALNSTSEPVEGLQHSLSWKPSG  253 (1265)
T ss_pred             hcccccccccccccchhhccCCceEEEccCCc--EEEEEEEeccCCceeEEEecccc-hhhcccCcccccccceeecCCC
Confidence                                112244444444  555421   133 7899999873 3322 22333445689999999


Q ss_pred             CEEEEEe---CCCcEEEEEEcCCCcEEEEEec--CCCcccEEEEEeCCCCCEEEE---EeCCCcEEEEEeecCC
Q 015650          271 QLLATSS---TKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAFSSNAQWLAV---SSDKGTVHVFNLKVNS  336 (403)
Q Consensus       271 ~~l~s~~---~dg~~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~s~d~~~l~s---~~~dg~v~iwd~~~~~  336 (403)
                      ..+++-.   .|+. |.+|. ++|-.-..+..  ......|..++|+.++..||+   ......|++|-+.+..
T Consensus       254 s~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  254 SLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            9998743   3556 99997 45543333321  123345999999999999987   4455569999887654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.72  E-value=1.4e-05  Score=73.36  Aligned_cols=220  Identities=12%  Similarity=0.075  Sum_probs=126.9

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCC
Q 015650           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS  176 (403)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~  176 (403)
                      ..+..++ ++.+..+|.++++......+. +.  ........ ++..++.. .+     +.|.-+|.++|+.+..+....
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~--~~ssP~v~-~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~  190 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVA-GE--ALSRPVVS-DGLVLVHT-SN-----GMLQALNESDGAVKWTVNLDV  190 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCC-Cc--eecCCEEE-CCEEEEEC-CC-----CEEEEEEccCCCEeeeecCCC
Confidence            3444554 555999999888887665553 11  11111222 34444433 33     889999999999888776322


Q ss_pred             ce------eEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCC-------ceeEEEee--CCCeEEEEeeCCccCe
Q 015650          177 EV------RSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANP-------KGLCAVSQ--GVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       177 ~i------~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~g~~d~~  240 (403)
                      +.      .......+..++. .++.+..+|..+|+.+.........       ...+..+|  .++.+++.   +.++.
T Consensus       191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~---~~~g~  267 (394)
T PRK11138        191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL---AYNGN  267 (394)
T ss_pred             CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE---EcCCe
Confidence            11      1112222333333 5889999999998877665321110       00001111  23444443   25789


Q ss_pred             EEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 015650          241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (403)
Q Consensus       241 i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s  320 (403)
                      +..+|..+++..-..... ....+..  ++..|+.++.+|. |..+|..+|+.+-......+ ....+...  .+.+|+.
T Consensus       268 l~ald~~tG~~~W~~~~~-~~~~~~~--~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v  340 (394)
T PRK11138        268 LVALDLRSGQIVWKREYG-SVNDFAV--DGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVV  340 (394)
T ss_pred             EEEEECCCCCEEEeecCC-CccCcEE--ECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEE
Confidence            999999887654322211 1112222  4567778888999 99999999987544331101 11222222  2567788


Q ss_pred             EeCCCcEEEEEeecCCC
Q 015650          321 SSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       321 ~~~dg~v~iwd~~~~~~  337 (403)
                      ++.+|.|++.|.++++.
T Consensus       341 ~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        341 GDSEGYLHWINREDGRF  357 (394)
T ss_pred             EeCCCEEEEEECCCCCE
Confidence            89999999999999873

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=1.2e-07  Score=79.47  Aligned_cols=145  Identities=12%  Similarity=0.149  Sum_probs=107.1

Q ss_pred             ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-----ceeEEeecCCceEEEEE
Q 015650          192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFAL  266 (403)
Q Consensus       192 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-----~~~~~~~~~~~i~~~~~  266 (403)
                      .+..|-+-|+++|-. +.|. ....|....|...++   ++..|..+|.|..+|++.+     ......-|...|+++..
T Consensus       232 ~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n---Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  232 LSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN---LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ccceeEEEEeecccc-cccc-cchhHHHHHhcccCC---eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            466788888877632 2232 344555666665444   3334789999999999974     23444568999999987


Q ss_pred             cC-CCCEEEEEeCCCcEEEEEEcCCCcE---EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650          267 TQ-DGQLLATSSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       267 sp-~g~~l~s~~~dg~~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      -. ++.+|++.+.+|+ |++||++-.++   +..+.+|.....-.-+...+....++++++|...+||.++.+..+.++.
T Consensus       307 Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            66 7889999999999 99999998777   8888876544444445566777788899999999999999988665554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.70  E-value=8.3e-06  Score=74.29  Aligned_cols=176  Identities=11%  Similarity=0.089  Sum_probs=116.7

Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE-----ec--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-----LE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      ..+.+-|.. +...+.+. ....+..-.|+|++..++     ..  ..++++|+.+++....+. .........|+|+++
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~  250 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS  250 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence            566666654 65555665 556777889999988766     12  369999999887655554 334446779999999


Q ss_pred             eEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcE--EEEEEcCCCcEEEEEecCCCccc
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTL--VRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~--i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      .+++.......-.|.++|+.++....+..-.+.-..-.|+|||++|+..+..+..  |.+.|++..... .+...  ...
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~--~~~  327 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFS--GGG  327 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeecc--CCC
Confidence            8877765544455777788887766655544444577899999999877664421  666676655543 33321  122


Q ss_pred             EEEEEeCCCCCEEEEEeC-CCc--EEEEEeecCC
Q 015650          306 IYSLAFSSNAQWLAVSSD-KGT--VHVFNLKVNS  336 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~-dg~--v~iwd~~~~~  336 (403)
                      -..-.|+|||++|+..+. +|.  |.+.++.++.
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            227889999999987764 344  5555555544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.70  E-value=1.7e-05  Score=65.47  Aligned_cols=198  Identities=12%  Similarity=0.074  Sum_probs=105.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEe----cccCcceeEEEEeeeCC-------eEEEeeCCCCCCC
Q 015650           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRD----FERGGGIGVVEMLFRCN-------ILALVGGGPDPQY  153 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~-------~~~~~s~~~d~~~  153 (403)
                      ..=..++|+||+.+||.+...| |++||+.... ++...    +...-...|..+.|-..       ...++-.- .   
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y-~---  118 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY-R---  118 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEec-c---
Confidence            3456789999999999998666 9999986533 22111    11122345555655331       12233222 2   


Q ss_pred             CCceEEEEECCC-----CceeEEEe----cCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650          154 PLNKVMIWDDHQ-----SRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       154 ~~~~i~iwd~~~-----~~~~~~~~----~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (403)
                        |.++-|-+..     .+....+.    +...|.++.++|..++++..|.-.-   +++.    -+.....+.+-.+-.
T Consensus       119 --G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~---~~~~----s~a~~~GLtaWRiL~  189 (282)
T PF15492_consen  119 --GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN---QDGM----SKASSCGLTAWRILS  189 (282)
T ss_pred             --ceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC---CCcc----ccccccCceEEEEcC
Confidence              5666665422     23344444    4678999999998776662111000   0000    000011111111111


Q ss_pred             CCCeEEEEeeCCccC------eEEEEEccCCceeEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          225 GVGSLVLVCPGLQKG------QVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~------~i~v~d~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      +......+. ..+++      .-.+|.+-+...... ......|..|.+||||..||+...+|. |.+|++.+.++.+.+
T Consensus       190 ~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  190 DSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcchhhccc
Confidence            111111111 11111      112333222222111 234667999999999999999999999 999999998888777


Q ss_pred             ec
Q 015650          298 RR  299 (403)
Q Consensus       298 ~~  299 (403)
                      ..
T Consensus       268 ~~  269 (282)
T PF15492_consen  268 KQ  269 (282)
T ss_pred             ch
Confidence            64

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.70  E-value=6.5e-07  Score=76.72  Aligned_cols=155  Identities=12%  Similarity=0.074  Sum_probs=105.5

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCee----EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      .+..+..++++++||++.. +...++++....+    .-...+. .....+..+............++.     ..+.+|
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~-----~~~di~  137 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDV-----YSFDIL  137 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCc-----eeeeee
Confidence            4555677888999998874 4455666643332    1112222 233445555555556666666666     788888


Q ss_pred             ECCCCceeEEEecCCceeEEEEecCceEEE-e--cCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       162 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      ....+.+.-.+.|-..+.+++++||.++++ .  |..|++-....--.+..+ -+|..-|..+++-++..   +++ |+.
T Consensus       138 s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~---LlS-~sG  213 (390)
T KOG3914|consen  138 SADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL---LLS-GSG  213 (390)
T ss_pred             cccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce---eee-cCC
Confidence            877777777777999999999999999888 3  678888776654444444 46888888888876532   343 457


Q ss_pred             cCeEEEEEccCCce
Q 015650          238 KGQVRVEHYASKRT  251 (403)
Q Consensus       238 d~~i~v~d~~~~~~  251 (403)
                      |+++++||+++++.
T Consensus       214 D~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  214 DKTLRLWDITSGKL  227 (390)
T ss_pred             CCcEEEEecccCCc
Confidence            99999999998653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=3.8e-07  Score=79.21  Aligned_cols=247  Identities=15%  Similarity=0.084  Sum_probs=168.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC-CCCCCCceE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKV  158 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~i  158 (403)
                      --|.+.|+.+..+. .+++.+++ |+.++.|.-.. ....+...+. .|...+.+++.+-++..+.+.+. |     ..+
T Consensus         6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~D-----hs~   78 (558)
T KOG0882|consen    6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPD-----HSV   78 (558)
T ss_pred             hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcc-----cce
Confidence            34778888875543 56777887 66699998654 2223334444 67788889999999999999776 7     999


Q ss_pred             EEEECCCCceeEEEecCCceeEEEEec-Cc--e-EEE----ecCeEEEEEcCCc--eeeeEeeccCCCceeEEEeeCCCe
Q 015650          159 MIWDDHQSRCIGELSFRSEVRSVKLRR-DR--I-IVV----LEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~--~-~~~----~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      +++|+++-..+.-++.......+.|.. .|  . .++    .++.+.++|-...  +....-.-|..++..+.+.+.++.
T Consensus        79 KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   79 KVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             eEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence            999998876665444222222233322 22  1 222    3788999996543  223333567889999999998874


Q ss_pred             EEEEeeCCccCeEEEEEccC------Cce----------eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650          229 LVLVCPGLQKGQVRVEHYAS------KRT----------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~------~~~----------~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (403)
                      ..   +....|.|..|....      ..+          ..+...+....++.|+|+|..+.+-+.|.. |++++.++++
T Consensus       159 ~v---SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGk  234 (558)
T KOG0882|consen  159 AV---SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGK  234 (558)
T ss_pred             ee---eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccch
Confidence            32   245679999998774      111          112234556789999999999999999999 9999999987


Q ss_pred             EEEEEec-------------------------------CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650          293 LLQEVRR-------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       293 ~~~~~~~-------------------------------~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~  340 (403)
                      .++.+..                               ......-+.+.|...|++|+-++-=| |++.++.+++..+.
T Consensus       235 lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri  312 (558)
T KOG0882|consen  235 LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI  312 (558)
T ss_pred             hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence            7665431                               00112334577888899999888766 99999999885443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.70  E-value=1.5e-05  Score=74.21  Aligned_cols=166  Identities=9%  Similarity=0.012  Sum_probs=110.6

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEec-------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      +.+.+.|.++.+...++.-......+.+++++.+++..       .++...+..+...+..+...    ...++.++++.
T Consensus       215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----~iea~vkdGK~  290 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----RIEEAVKAGKF  290 (635)
T ss_pred             EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----HHHHhhhCCCE
Confidence            67778888887777777766677888999999888721       23333333222212111110    01133445664


Q ss_pred             EEEEeeCCccCeEEEEEccC-----CceeEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcE---------
Q 015650          229 LVLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL---------  293 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~-----~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~---------  293 (403)
                      .++     .++.|.+.|.++     ..+.....-......+.++|||+++++++. +.+ |.|.|+.+.+.         
T Consensus       291 ~~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        291 KTI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             EEE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCcc
Confidence            443     246899999887     344444445566789999999999987665 667 99999987552         


Q ss_pred             ---EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          294 ---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       294 ---~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                         ..+...+   ..-...+|.++|....+---|..|..|++.+
T Consensus       365 ~~vvaevevG---lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEPELG---LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEeeccC---CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence               3444432   3445688999998888888899999999987

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=1.3e-05  Score=74.76  Aligned_cols=94  Identities=14%  Similarity=0.180  Sum_probs=67.4

Q ss_pred             EEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE---------eCCCcEEEEEeecCCCCCCCC
Q 015650          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS---------SDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      ++|.|...|+ |.++|+.++..-+.+..  |...|.++.|--..+++-.+         +.-+.+.+-|+++|-...   
T Consensus       439 LvAvGT~sGT-V~vvdvst~~v~~~fsv--ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~---  512 (1062)
T KOG1912|consen  439 LVAVGTNSGT-VDVVDVSTNAVAASFSV--HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR---  512 (1062)
T ss_pred             eEEeecCCce-EEEEEecchhhhhhhcc--cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---
Confidence            6788999999 99999999988888875  77899999997665544322         223457788888886411   


Q ss_pred             CCCCCCCCCcccccccccccccceeeeeeeeEEEEEe-CCCceEEEeccCCCEEEEEccC
Q 015650          343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                                                    +.-.+.+ +.+|..+..|.-|+||++.-.|
T Consensus       513 ------------------------------fR~l~~~despI~~irvS~~~~yLai~Fr~  542 (1062)
T KOG1912|consen  513 ------------------------------FRGLQKPDESPIRAIRVSSSGRYLAILFRR  542 (1062)
T ss_pred             ------------------------------cccCCCCCcCcceeeeecccCceEEEEecc
Confidence                                          1112222 3578888888899999887654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=1.2e-07  Score=79.61  Aligned_cols=151  Identities=15%  Similarity=0.176  Sum_probs=113.9

Q ss_pred             EEcC--CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC---
Q 015650           92 SFNQ--DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---  166 (403)
Q Consensus        92 ~~s~--d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~---  166 (403)
                      +|+-  .|-.+++|.+.+|-+-+++++..   ..|.  ....|.++.|......+..|.+.     |.|..+|++.+   
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~---qsf~--sksDVfAlQf~~s~nLv~~GcRn-----geI~~iDLR~rnqG  287 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ---QSFQ--SKSDVFALQFAGSDNLVFNGCRN-----GEIFVIDLRCRNQG  287 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccc---cccc--cchhHHHHHhcccCCeeEecccC-----CcEEEEEeeecccC
Confidence            5543  24456778888899999887754   3453  66788899998877788888888     99999999764   


Q ss_pred             --ceeEEEecCCceeEEEEec-CceEEE---ecCeEEEEEcCCcee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          167 --RCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       167 --~~~~~~~~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                        .+...+.|...|+++..-. ++.++.   .+|+|++||++--++   +.++++|.+....+-+.-+.+.-++++.| +
T Consensus       288 ~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-d  366 (425)
T KOG2695|consen  288 NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-D  366 (425)
T ss_pred             CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-C
Confidence              5667777999999998776 555555   589999999987666   88888887765555555555554555545 8


Q ss_pred             cCeEEEEEccCCceeE
Q 015650          238 KGQVRVEHYASKRTKF  253 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~  253 (403)
                      |...++|.++.+.+..
T Consensus       367 DcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  367 DCYTRIWSLDSGHLLC  382 (425)
T ss_pred             eeEEEEEecccCceee
Confidence            9999999999876544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.65  E-value=1.5e-05  Score=72.84  Aligned_cols=221  Identities=14%  Similarity=0.177  Sum_probs=121.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ..-....+.++|+|+++++++++...||........        .......+.|..++.+.+-.. .     ++|.|+.-
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k--------~~G~g~~~vw~~~n~yAv~~~-~-----~~I~I~kn   96 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK--------AFGSGLSFVWSSRNRYAVLES-S-----STIKIYKN   96 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE--------EEEE-SEEEE-TSSEEEEE-T-T-----S-EEEEET
T ss_pred             CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc--------ccCceeEEEEecCccEEEEEC-C-----CeEEEEEc
Confidence            334467899999999999988888888874433322        123344566766665554443 3     78999743


Q ss_pred             CCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (403)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (403)
                      -+.+....++.+..+..+-.   |.+++  .++.|.+||+.+++.++.+...  ++..+.|+++++.+.+++    +..+
T Consensus        97 ~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i  167 (443)
T PF04053_consen   97 FKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSI  167 (443)
T ss_dssp             TEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SE
T ss_pred             CccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeE
Confidence            33444345553333444433   66555  5667999999999999998743  378899999988666653    4577


Q ss_pred             EEEEccCC------------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          242 RVEHYASK------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       242 ~v~d~~~~------------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                      .+++.+..            ....+......|.+..|..+  .++..+.. . |+-+  ..|+.- .+..  -..++.=+
T Consensus       168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~yll  238 (443)
T PF04053_consen  168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLYLL  238 (443)
T ss_dssp             EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--EEE
T ss_pred             EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceEEE
Confidence            77776655            55555554677889999765  44444444 5 7774  344432 2221  12456667


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .+.+....+.....|+.|..+.++...
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred             EEEccCCEEEEEECCCCEEEEEECHHH
Confidence            777777788888889899888776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.63  E-value=1.2e-07  Score=54.85  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=34.4

Q ss_pred             ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650          250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd  287 (403)
                      .+..+.+|...|.+|+|+|++.+|++++.|+. |++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            35678899999999999999999999999999 99997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.63  E-value=0.00011  Score=62.27  Aligned_cols=183  Identities=15%  Similarity=0.123  Sum_probs=112.1

Q ss_pred             CCCEEEEE-cCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEE-e
Q 015650           96 DHGCFAAG-TDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S  173 (403)
Q Consensus        96 d~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~-~  173 (403)
                      ++..++++ .++.+..||..+++......+.......   .....+..++++.+       +.|+.+|..+|+.+... .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~  104 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYL  104 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeecccccccccce-------eeeEecccCCcceeeeecc
Confidence            44455554 5666999999999988777774221222   24445555555533       78999999999998884 3


Q ss_pred             cC-C-----ceeEEEEecCceEEEe-cCeEEEEEcCCceeeeEeeccCCCce---------eEEEeeCCCeEEEEeeCCc
Q 015650          174 FR-S-----EVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       174 ~~-~-----~i~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~  237 (403)
                      .. .     ......+..+..++.. ++.|+.+|+++|+.+...........         .......++.+ +++  ..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~--~~  181 (238)
T PF13360_consen  105 TSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRV-YVS--SG  181 (238)
T ss_dssp             -SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEE-EEE--CC
T ss_pred             ccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEE-EEE--cC
Confidence            21 1     1223333433333334 89999999999999888766432211         12222233333 333  24


Q ss_pred             cCe-EEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650          238 KGQ-VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (403)
Q Consensus       238 d~~-i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~  295 (403)
                      ++. +.+ |..+++... ......+..+ ...++..|+.++.++. |..||+++|+.+-
T Consensus       182 ~g~~~~~-d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~-l~~~d~~tG~~~W  236 (238)
T PF13360_consen  182 DGRVVAV-DLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGR-LYALDLKTGKVVW  236 (238)
T ss_dssp             TSSEEEE-ETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTE-EEEEETTTTEEEE
T ss_pred             CCeEEEE-ECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCE-EEEEECCCCCEEe
Confidence            554 555 999887553 3223333331 3467788888888998 9999999998763

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.62  E-value=1e-06  Score=71.23  Aligned_cols=74  Identities=16%  Similarity=0.364  Sum_probs=59.7

Q ss_pred             CceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC-CCCEEEEEeCCCcEEEEEeec
Q 015650          259 SRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       259 ~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      ..|.+++-+|.. +++++|+.||. +.+||.++......+.. .|..+|+.+-|+| ++..|+++++||.+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHH-HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            348999999955 45567788888 99999998755444433 3889999999998 567899999999999999885

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.61  E-value=3.8e-07  Score=85.90  Aligned_cols=178  Identities=17%  Similarity=0.163  Sum_probs=121.5

Q ss_pred             ecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCce
Q 015650          184 RRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRI  261 (403)
Q Consensus       184 ~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i  261 (403)
                      .++..... ....+..+|+++.+..+........+..++.  +++  ++. .|...|+|.+-|.++ +.+..+.+|.+.|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr--~lf-~G~t~G~V~LrD~~s~~~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNR--NLF-CGDTRGTVFLRDPNSFETIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCc--EEE-eecccceEEeecCCcCceeeeeeccccce
Confidence            34433333 4567888999988877766554444444443  333  333 367899999999988 5577899999999


Q ss_pred             EEEEEcCCCCEEEEEeC---------CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015650          262 ACFALTQDGQLLATSST---------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN  331 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~---------dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd  331 (403)
                      .++..  .|+.|++++.         |.- |+|||++..+.+..+.-+   ..-.-+.|.|.- ..+++++..|...+-|
T Consensus       221 SDfDv--~GNlLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  221 SDFDV--QGNLLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             eeeec--cCCeEEEeecccccccccccch-hhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceeecc
Confidence            87765  8899999886         444 899999988877666532   222456777754 4688889999999998


Q ss_pred             eecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ..+-.+.+.                               .+..+......+..+.+|+.|+.++.|..+|.
T Consensus       295 ~~~lsNP~~-------------------------------~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~  335 (1118)
T KOG1275|consen  295 TATLSNPPA-------------------------------GVKMVNPNGSGISAFDISSNGDALAFGDHEGH  335 (1118)
T ss_pred             ccccCCCcc-------------------------------ceeEEccCCCcceeEEecCCCceEEEecccCc
Confidence            544332100                               01111222234788999999999999998873

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=8.1e-05  Score=64.69  Aligned_cols=207  Identities=13%  Similarity=0.080  Sum_probs=124.2

Q ss_pred             ceEEEEECCCCceeEEEecCCceeE-EEEecCceEEEecCeEEEEEcCCceeeeEeecc-----CCCceeEEEeeCCCeE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRS-VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-----ANPKGLCAVSQGVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  229 (403)
                      +.|.-|+..+++. ..+.....+.+ +.+...+.+++.+..+++++.+++..+..+...     ....+...+.+++. +
T Consensus        47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~  124 (307)
T COG3386          47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-I  124 (307)
T ss_pred             CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-E
Confidence            7788888765543 34444444444 445566777778999999998766553333211     12334567777764 3


Q ss_pred             EEEeeC---------CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC--C---cEEE
Q 015650          230 VLVCPG---------LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--G---TLLQ  295 (403)
Q Consensus       230 ~~~~~g---------~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~--~---~~~~  295 (403)
                      ++...+         ..-|.++.+|......+.+..+-..-+.|+||||++.|+.+-.....|.-|++..  +   ....
T Consensus       125 wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~  204 (307)
T COG3386         125 WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG  204 (307)
T ss_pred             EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce
Confidence            333323         1124444445433445555555666688999999998887766533277777652  1   1111


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCC-cEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (403)
Q Consensus       296 ~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (403)
                      .+......+..-.++...+|.+.+++..+| .|.+|+.+ ++.                                   +.
T Consensus       205 ~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l-----------------------------------~~  248 (307)
T COG3386         205 FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL-----------------------------------LG  248 (307)
T ss_pred             EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE-----------------------------------EE
Confidence            111111345566777888888876555554 89999888 663                                   44


Q ss_pred             EEEEeCCCceEEEe-ccCCCEEEEEcc
Q 015650          375 QFRLVEGSPYIVAF-GHQKNTVVILGM  400 (403)
Q Consensus       375 ~~~~~~~~~~~~~f-s~d~~~l~~~~~  400 (403)
                      +++++...+++++| .++.++|++.+.
T Consensus       249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         249 EIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEECCCCCCccceEeCCCcCEEEEEec
Confidence            56676677788888 556777776654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.5e-06  Score=75.64  Aligned_cols=208  Identities=13%  Similarity=0.146  Sum_probs=143.0

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC---ceeEEEe-cCCceeEEEEecCceEEEe----cCeEEEE
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVVL----EQKIFVY  199 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~~----d~~i~i~  199 (403)
                      |...|+.+.. ....++.+++.|     |.++.|--..-   +.+..+. |-..|.+++.+-++.+..+    |..++++
T Consensus         8 hrd~i~hv~~-tka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHVFP-TKAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ccceeeeEee-ehhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence            4555554433 334567777777     99999974331   2233333 7788899999999998884    8899999


Q ss_pred             EcCCceeeeEeeccCCCceeEEEeeCCC-eEEEEeeCCccCeEEEEEccCCc---eeEEeecCCceEEEEEcCCCCEEEE
Q 015650          200 NFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLAT  275 (403)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~v~d~~~~~---~~~~~~~~~~i~~~~~sp~g~~l~s  275 (403)
                      |+.+-..+.-++...-+-.+..+...++ .-.++.+...++.+.++|-....   .....-|..+|.++.+++-+..+++
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence            9987655443333222222223333332 22344445578999999977633   2334569999999999999999999


Q ss_pred             EeCCCcEEEEEEcCC------CcEEEEEec-------CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650          276 SSTKGTLVRIFNTLD------GTLLQEVRR-------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       276 ~~~dg~~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      ....|. |.-|..+.      .+....++.       ........++.|+|+|..+.+-+.|..|+++++.+++..+.++
T Consensus       162 iD~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  162 IDISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ccccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence            888898 99998762      111111110       0123567899999999999999999999999999999877776

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.48  E-value=9.4e-05  Score=72.60  Aligned_cols=197  Identities=11%  Similarity=0.066  Sum_probs=120.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      .+.|.++.|.-++..++.+...| |.+-|..+.......    .-..+|.++.|++|...++-....     +++.+-+-
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg----~vd~GI~aaswS~Dee~l~liT~~-----~tll~mT~  138 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG----NVDNGISAASWSPDEELLALITGR-----QTLLFMTK  138 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee----eccCceEEEeecCCCcEEEEEeCC-----cEEEEEec
Confidence            36899999999988888777555 777676655444322    345788899999886655444332     45544321


Q ss_pred             ----CC-------------------CceeEEEe----------------------cCCceeEEEEecCceEEEe------
Q 015650          164 ----HQ-------------------SRCIGELS----------------------FRSEVRSVKLRRDRIIVVL------  192 (403)
Q Consensus       164 ----~~-------------------~~~~~~~~----------------------~~~~i~~~~~~~~~~~~~~------  192 (403)
                          -.                   |+.-..|.                      -.+.=..|.|.-||.+++.      
T Consensus       139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence                00                   11001111                      0111234899999988872      


Q ss_pred             -c-CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE----EeecCCceEEEEE
Q 015650          193 -E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF----IMAHDSRIACFAL  266 (403)
Q Consensus       193 -d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~----~~~~~~~i~~~~~  266 (403)
                       + ..|++||.+ |.+-..-....+.-.+++|-|.|..+...-.-..++.|.+|.-++-+...    +......+..++|
T Consensus       219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence             5 789999965 54333222333444678888876643322223356689999866633221    2233444899999


Q ss_pred             cCCCCEEEE---EeCCCcEEEEEEcCCCc
Q 015650          267 TQDGQLLAT---SSTKGTLVRIFNTLDGT  292 (403)
Q Consensus       267 sp~g~~l~s---~~~dg~~i~iwd~~~~~  292 (403)
                      +.++..|+.   ...... |++|-+.+..
T Consensus       298 ns~sdiLAv~~~~~e~~~-v~lwt~~Nyh  325 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSL-VQLWTTGNYH  325 (1265)
T ss_pred             cCCCCceeeeecccccce-EEEEEecCeE
Confidence            999999987   445555 9999877643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.48  E-value=1.6e-05  Score=72.28  Aligned_cols=90  Identities=14%  Similarity=0.324  Sum_probs=70.5

Q ss_pred             EEEEccCCceeEE----eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 015650          242 RVEHYASKRTKFI----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW  317 (403)
Q Consensus       242 ~v~d~~~~~~~~~----~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~  317 (403)
                      .+|+....+++..    ......+.+++++|+...|+.|+.||. |.+||...+... ..+   ..-..+.++|+|+|.+
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~-~~k---a~~~P~~iaWHp~gai  313 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTL-LAK---AEFIPTLIAWHPDGAI  313 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCeee-eee---ecccceEEEEcCCCcE
Confidence            4566555444332    356788999999999999999999999 999998665332 223   3356789999999999


Q ss_pred             EEEEeCCCcEEEEEeecCC
Q 015650          318 LAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       318 l~s~~~dg~v~iwd~~~~~  336 (403)
                      +++|+..|.+.+||+.-.-
T Consensus       314 ~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  314 FVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEcCCceEEEEEeecCc
Confidence            9999999999999987654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.48  E-value=5.6e-06  Score=75.35  Aligned_cols=191  Identities=10%  Similarity=0.059  Sum_probs=126.3

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCC-ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe----cC--eEEEEE
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPL-NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----EQ--KIFVYN  200 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~-~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----d~--~i~i~d  200 (403)
                      ....+..-.|++++..++...-.  ... ..+.++++.+++....+.....-...+|+|||+.++.    |+  .|+++|
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~--~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d  268 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFE--LGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD  268 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEe--cCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence            44455666677765543322110  000 2599999999988777777777778899999998882    33  688899


Q ss_pred             cCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC
Q 015650          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (403)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg  280 (403)
                      +..+.. ..+....+....-.|+|+|+.+++++.....-.|.+++.+.+....+......-..-.|+|||++|+..+..+
T Consensus       269 l~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~  347 (425)
T COG0823         269 LDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG  347 (425)
T ss_pred             CCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccC
Confidence            887663 3354444444577899999998887633223356667777777666665555444788999999998877432


Q ss_pred             c--EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 015650          281 T--LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (403)
Q Consensus       281 ~--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d  324 (403)
                      .  .|.+.|+.++..++.+.   .........|.++|+.+...+..
T Consensus       348 g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         348 GQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccC
Confidence            2  16677777666555554   33445567788999887765533

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.45  E-value=0.00049  Score=63.72  Aligned_cols=244  Identities=13%  Similarity=0.099  Sum_probs=134.6

Q ss_pred             CeEEEEEcCCCCEEEEEc-CCc-----EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC------
Q 015650           87 TLLHISFNQDHGCFAAGT-DHG-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP------  154 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~-~~~-----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~------  154 (403)
                      .+....++|||++||.+- .+|     ++++|+++++.+. ..+.   ......+.|.+++..++....+....      
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccc---ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            344678999999998773 221     9999999886542 2332   11222378888744433322221111      


Q ss_pred             CceEEEEECCCCcee--EEEe--cCCc-eeEEEEecCceEEE------ec-CeEEEEEcCCc----eeeeEeeccCCCce
Q 015650          155 LNKVMIWDDHQSRCI--GELS--FRSE-VRSVKLRRDRIIVV------LE-QKIFVYNFADL----KLLHQIETIANPKG  218 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~--~~~~--~~~~-i~~~~~~~~~~~~~------~d-~~i~i~d~~~~----~~~~~~~~~~~~~~  218 (403)
                      ...|+.|.+.+...-  ..+.  .... ...+..++|+++++      .+ ..+++.|+..+    .....+......+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            367899998877432  3444  2222 56888999999877      14 57899998764    23333333333332


Q ss_pred             eEEEeeCCCeEEEEe-eCCccCeEEEEEccCCc----eeEEeecCCceEEEEEcCCCCEEEEEeC-CCc-EEEEEEcCCC
Q 015650          219 LCAVSQGVGSLVLVC-PGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDG  291 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~-~g~~d~~i~v~d~~~~~----~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~-~i~iwd~~~~  291 (403)
                      ...-. .++.+++.+ -+..++.|...++....    ...+..+...+.-..+...+.+|+.... ++. .|+++++..+
T Consensus       281 ~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  281 YYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred             EEEEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence            22222 266666665 22345677777877643    2355566654333333345555554443 331 2889998745


Q ss_pred             cEEEEEecCCCcccEEEEEeCCCCCEEE--EEe--CCCcEEEEEeecCC
Q 015650          292 TLLQEVRRGADRAEIYSLAFSSNAQWLA--VSS--DKGTVHVFNLKVNS  336 (403)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~--s~~--~dg~v~iwd~~~~~  336 (403)
                      .....+... ..+.|..+...+++..+.  ..+  .-++++-||+.+++
T Consensus       360 ~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  360 KESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             cEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            555555543 235577777667666443  222  34578888888887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.40  E-value=0.001  Score=60.90  Aligned_cols=218  Identities=16%  Similarity=0.182  Sum_probs=116.2

Q ss_pred             EEEcCCCCEEEEEcCC------------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           91 ISFNQDHGCFAAGTDH------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        91 i~~s~d~~~l~~~~~~------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      ++.+|.|..+|...+.            .|+||+... +.+....+.  + ..+..+.|..+...++-.. +     |.+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~--~-~~iv~~~wt~~e~LvvV~~-d-----G~v  103 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWD--S-GRIVGMGWTDDEELVVVQS-D-----GTV  103 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEEC--C-CCEEEEEECCCCeEEEEEc-C-----CEE
Confidence            4555666666655544            488888653 344334443  3 7899999987655554443 3     999


Q ss_pred             EEEECCCCceeEEEe----------cCCceeEEEEecCceEEE-ecCeEEEEEcCCce-eeeEeeccCC----------C
Q 015650          159 MIWDDHQSRCIGELS----------FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK-LLHQIETIAN----------P  216 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~----------~  216 (403)
                      +++|+. |+.  .+.          ....+....+..+|..+. .++.+++.+--... ..+.+.....          .
T Consensus       104 ~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~  180 (410)
T PF04841_consen  104 RVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSW  180 (410)
T ss_pred             EEEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccc
Confidence            999976 333  222          112223334445676655 45555544322211 1111110000          0


Q ss_pred             ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (403)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (403)
                      .....+..+....+++.   .++.+.+.+-..-  ..+. ..+++..|++||+|++||.-..+|. +.|.+..-.+.+.+
T Consensus       181 ~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~--~~i~-~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e  253 (410)
T PF04841_consen  181 TVIPLLSSDRVVEILLA---NGETIYIIDENSF--KQID-SDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCE  253 (410)
T ss_pred             ccceEeecCcceEEEEe---cCCEEEEEEcccc--cccc-CCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEE
Confidence            00112222222222222   2344443322111  0111 2467999999999999999999999 99988766666666


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      +... .......|.|.-+...++.-  ...|.+..
T Consensus       254 ~~~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  254 FDTD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             eecC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            6653 23466788887654444333  33455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.40  E-value=9.4e-06  Score=76.34  Aligned_cols=102  Identities=11%  Similarity=0.194  Sum_probs=76.8

Q ss_pred             EEEcCCCCEEEEEc----CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650           91 ISFNQDHGCFAAGT----DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (403)
Q Consensus        91 i~~s~d~~~l~~~~----~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~  165 (403)
                      +.|+|...++|+++    .+| |.||- ++++..  +...  .+..+.+++|+|....++.+-..     |.+.+|...+
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq--r~Vt--~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~~   90 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ--RDVT--YPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTNT   90 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCC--cccc--cceehhhhccChHHHHHhhcccc-----ceeEEEecCC
Confidence            57999999998886    333 88884 445433  3332  44567789999999999998887     9999999766


Q ss_pred             CceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcC
Q 015650          166 SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (403)
Q Consensus       166 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~  202 (403)
                      .+.-.... |+.+|..+.|+++|..+.+   -|.+.+|...
T Consensus        91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            55444433 9999999999999998883   3578888765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.39  E-value=1.2e-05  Score=76.17  Aligned_cols=176  Identities=17%  Similarity=0.289  Sum_probs=124.0

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cC
Q 015650           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR  175 (403)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~  175 (403)
                      ..++.|+ .+.+..+|+.+.+......+.   ...+.-+..  ++..+.+|...     |+|.+-|.++.+.+.++. |.
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR~--Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMRY--NNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeecc---CCceEEEEe--cCcEEEeeccc-----ceEEeecCCcCceeeeeeccc
Confidence            3444444 455777788776665333332   223444433  55677777777     999999999999999999 99


Q ss_pred             CceeEEEEecCceEEE----------ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEE
Q 015650          176 SEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d  245 (403)
                      +.|.++....+-.+.+          .|.-|++||++..+.+.-+..+.++ ..+.|.|.=...++++  +..|...+-|
T Consensus       218 ~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~vd  294 (1118)
T KOG1275|consen  218 GSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFVD  294 (1118)
T ss_pred             cceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeecc
Confidence            9998877654432222          4778999999998877766655555 6677777655555554  3568888888


Q ss_pred             ---ccCCc--eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650          246 ---YASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       246 ---~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd  287 (403)
                         +.+..  ...+......+..+.++++|..|+.|..+|. |.+|.
T Consensus       295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa  340 (1118)
T KOG1275|consen  295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA  340 (1118)
T ss_pred             ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence               33332  3334445566999999999999999999999 99996

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.38  E-value=0.00097  Score=59.36  Aligned_cols=173  Identities=14%  Similarity=0.153  Sum_probs=107.3

Q ss_pred             ceEEEEECCCCceeEEEe--cCCceeEEEE---ecC----ceEEE--e----------c-CeEEEEEcCCc----eeeeE
Q 015650          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKL---RRD----RIIVV--L----------E-QKIFVYNFADL----KLLHQ  209 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~---~~~----~~~~~--~----------d-~~i~i~d~~~~----~~~~~  209 (403)
                      ..|++.|..+.+.+..+.  ..+.+.+++.   ..+    ..+++  +          . |.|.+|++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            478999988888887776  3445555543   322    34544  1          2 88999999883    22332


Q ss_pred             e--eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650          210 I--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (403)
Q Consensus       210 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw  286 (403)
                      +  ....+++..++.-  ++. ++++   .++.|.+|++.... +.....+...+........+++|+.|..... |.++
T Consensus        82 i~~~~~~g~V~ai~~~--~~~-lv~~---~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~  154 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGR-LVVA---VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS-VSLL  154 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTE-EEEE---ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS-EEEE
T ss_pred             EEEEeecCcceEhhhh--CCE-EEEe---ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC-EEEE
Confidence            2  1234555544443  444 4444   34899999999877 6555444443333444445679999988777 8877


Q ss_pred             EcCC-CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          287 NTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       287 d~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      .... ...+..+........++++.|-+|++.++.+..+|.|.++..+..
T Consensus       155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred             EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence            5443 333444444334567899999877789999999999999999743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.38  E-value=0.0014  Score=57.89  Aligned_cols=219  Identities=11%  Similarity=-0.031  Sum_probs=107.9

Q ss_pred             EEcCCCCEEEEEc--CCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           92 SFNQDHGCFAAGT--DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        92 ~~s~d~~~l~~~~--~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      +|.+||+.|+.++  ++.  +.+.|+++++.......   ..........+++...++-....     ..|+-.|+.+.+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T~e  113 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG---PGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDTLE  113 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S---S-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC---CCCCccceEEecCCCeEEEEECC-----CeEEEEECCcCc
Confidence            5778997776655  333  77778877665432222   11111122333443333222111     578888999987


Q ss_pred             eeEEEe-cCCceeEEEE--ecCceEEEe-------------------------cCeEEEEEcCCceeeeEeeccCCCcee
Q 015650          168 CIGELS-FRSEVRSVKL--RRDRIIVVL-------------------------EQKIFVYNFADLKLLHQIETIANPKGL  219 (403)
Q Consensus       168 ~~~~~~-~~~~i~~~~~--~~~~~~~~~-------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~  219 (403)
                      ....+. ...-+-...|  +.|+..++.                         ...|...|+.+|+....+. ....+..
T Consensus       114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH  192 (386)
T PF14583_consen  114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH  192 (386)
T ss_dssp             EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred             EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence            766666 3333333444  345666551                         2367788888887655443 4677788


Q ss_pred             EEEeeCCCeEEEEe-eCCccCe-EEEEEccC--CceeEEeecC--CceEEEEEcCCCCEEEEEeC-----CCcEEEEEEc
Q 015650          220 CAVSQGVGSLVLVC-PGLQKGQ-VRVEHYAS--KRTKFIMAHD--SRIACFALTQDGQLLATSST-----KGTLVRIFNT  288 (403)
Q Consensus       220 ~~~~~~~~~~~~~~-~g~~d~~-i~v~d~~~--~~~~~~~~~~--~~i~~~~~sp~g~~l~s~~~-----dg~~i~iwd~  288 (403)
                      +.++|....+++.| -|..+.. -+||-++.  .....+..+.  ..+..=-|.|||..|..-+.     +.. |.-+|.
T Consensus       193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~d~  271 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGYDP  271 (386)
T ss_dssp             EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE-T
T ss_pred             cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEeeCC
Confidence            99999888877776 2323332 35665544  4444443332  23444568999988765332     334 677788


Q ss_pred             CCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 015650          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (403)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d  324 (403)
                      .+++.......    .....+--++||++++-=+.|
T Consensus       272 ~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  272 DTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence            88876543332    245567778999988654443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=1.4e-06  Score=82.09  Aligned_cols=238  Identities=8%  Similarity=0.136  Sum_probs=147.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC-----
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-----  152 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-----  152 (403)
                      +.++.|...-+|++|+-+.+.|++|.-.| |++|++.++...  .... .|...++-+..+.++....+.+.-..     
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--cccc-ccccccccccccCCcceeeeeccccCchHHH
Confidence            66788999999999999999999999555 999999887655  3443 57777777666665544333221100     


Q ss_pred             --------------------CC-----------CceEEEEECCCCceeEEEe-----cCCceeEEEEecCceEEEecCeE
Q 015650          153 --------------------YP-----------LNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRRDRIIVVLEQKI  196 (403)
Q Consensus       153 --------------------~~-----------~~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~d~~i  196 (403)
                                          |+           .....+||+.++..+.++-     ....-....|+|+..++..||- 
T Consensus      1172 W~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGv- 1250 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGV- 1250 (1516)
T ss_pred             hccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCce-
Confidence                                00           0346677777776555522     1222356778888888888875 


Q ss_pred             EEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEE
Q 015650          197 FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLAT  275 (403)
Q Consensus       197 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s  275 (403)
                       +||.+..+.++.|.... ....-.|+|++..+++-+        .|||+++-++ .....-  .-..+.|+..|..++.
T Consensus      1251 -LWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS--------EIwD~RTF~lLh~VP~L--dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1251 -LWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS--------EIWDMRTFKLLHSVPSL--DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             -eeeeccHHHHhhhhhhe-ecccccccCCCceEEeec--------hhhhhHHHHHHhcCccc--cceEEEeccCccchhh
Confidence             68888777776665433 222345778777655432        4788887332 211111  1234667777766553


Q ss_pred             EeC-----C------------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---------CcEEE
Q 015650          276 SST-----K------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---------GTVHV  329 (403)
Q Consensus       276 ~~~-----d------------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d---------g~v~i  329 (403)
                      .-.     +            .. .+-||..+-..+.++..   ...|..++-+|...+|.+.-..         -..++
T Consensus      1319 ~~~~~d~~sdvh~~r~k~p~fSS-FRTf~a~dYs~iaTi~v---~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~ 1394 (1516)
T KOG1832|consen 1319 MLNIEDVMSDVHTRRVKHPLFSS-FRTFDAIDYSDIATIPV---DRCLLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARM 1394 (1516)
T ss_pred             hhhhhhhhhhhcccccccchhhh-hccccccccccceeeec---ccchhhhhcCCccceEEEEeccChhhhhhhhhhhhh
Confidence            320     0            11 45566666677777774   3578888888888888766432         25677


Q ss_pred             EEeecCC
Q 015650          330 FNLKVNS  336 (403)
Q Consensus       330 wd~~~~~  336 (403)
                      |.+-..+
T Consensus      1395 yEIGR~r 1401 (1516)
T KOG1832|consen 1395 YEIGRRR 1401 (1516)
T ss_pred             hhhcccC
Confidence            7664433

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.35  E-value=0.0017  Score=57.79  Aligned_cols=215  Identities=13%  Similarity=0.217  Sum_probs=122.6

Q ss_pred             cEEEEEcCCCeeEEEEecccCcceeEEEEe---eeCC----eEEEe-eCCCCC---CCCC-ceEEEEECCCC-----c--
Q 015650          107 GFRIYNCDPFREIFRRDFERGGGIGVVEML---FRCN----ILALV-GGGPDP---QYPL-NKVMIWDDHQS-----R--  167 (403)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~----~~~~~-s~~~d~---~~~~-~~i~iwd~~~~-----~--  167 (403)
                      .|++.|..+.+.+....+.  ....+.++.   +..+    ..+++ +.+...   ..+. |.|.++++...     +  
T Consensus         3 ~i~l~d~~~~~~~~~~~l~--~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELE--PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEE--TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             EEEEEeCCCCeEEEEEECC--CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            3788887777766556665  344444333   3321    23333 222110   0112 89999999884     2  


Q ss_pred             eeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEc
Q 015650          168 CIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (403)
Q Consensus       168 ~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~  246 (403)
                      .+......++|.+++--.+. +++ .++.|++|++...+.+..............+...++.+++   |+....+.++.+
T Consensus        81 ~i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~v---gD~~~sv~~~~~  156 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILV---GDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEE---EESSSSEEEEEE
T ss_pred             EEEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEE---EEcccCEEEEEE
Confidence            22333378999999888554 444 7999999999887723333333444466666666664333   335566776654


Q ss_pred             cC--CceeEEe--ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC-------Cc----EEEEEecCCCcccEEEE--
Q 015650          247 AS--KRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------GT----LLQEVRRGADRAEIYSL--  309 (403)
Q Consensus       247 ~~--~~~~~~~--~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~-------~~----~~~~~~~~~~~~~v~~l--  309 (403)
                      +.  ..+..+.  .....++++.|-++++.++.+..+|. |.++....       +.    ....+.   ....|+++  
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~  232 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRR  232 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEE---CCCccceEEE
Confidence            43  3343333  23556888888877778889999999 99987752       22    223333   33567777  


Q ss_pred             -EeCCC--CC------EEEEEeCCCcEEEEE
Q 015650          310 -AFSSN--AQ------WLAVSSDKGTVHVFN  331 (403)
Q Consensus       310 -~~s~d--~~------~l~s~~~dg~v~iwd  331 (403)
                       .+.|.  +.      .++.++.+|.|...-
T Consensus       233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  233 GSLIPRSGSSESPNRPQILYGTVDGSIGVLI  263 (321)
T ss_dssp             --SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred             EEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence             65552  22      477888999988443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.32  E-value=0.00048  Score=62.12  Aligned_cols=229  Identities=12%  Similarity=0.084  Sum_probs=120.5

Q ss_pred             cCCCCEEEEEc----------CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           94 NQDHGCFAAGT----------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        94 s~d~~~l~~~~----------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      |||+++++...          .+.+.|||+++++..   .+. .....+....|+|++..++-...      +.|.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~---~l~-~~~~~~~~~~~sP~g~~~~~v~~------~nly~~~~   70 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT---PLT-PPPPKLQDAKWSPDGKYIAFVRD------NNLYLRDL   70 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE---ESS--EETTBSEEEE-SSSTEEEEEET------TEEEEESS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE---ECc-CCccccccceeecCCCeeEEEec------CceEEEEC
Confidence            68898887743          233889999886543   232 12456677788888777666544      78999998


Q ss_pred             CCCceeEEEe-c-----------------CCceeEEEEecCceEEEe----cC---------------------------
Q 015650          164 HQSRCIGELS-F-----------------RSEVRSVKLRRDRIIVVL----EQ---------------------------  194 (403)
Q Consensus       164 ~~~~~~~~~~-~-----------------~~~i~~~~~~~~~~~~~~----d~---------------------------  194 (403)
                      .+++..+.-. .                 -..-..+-|+||++.++.    +.                           
T Consensus        71 ~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk  150 (353)
T PF00930_consen   71 ATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK  150 (353)
T ss_dssp             TTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred             CCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence            7774333221 1                 112356889999988771    11                           


Q ss_pred             --------eEEEEEcCCceeeeE-ee----ccCCCceeEEEeeCCCeEEEEeeCCc--cCeEEEEEccCCceeEE--eec
Q 015650          195 --------KIFVYNFADLKLLHQ-IE----TIANPKGLCAVSQGVGSLVLVCPGLQ--KGQVRVEHYASKRTKFI--MAH  257 (403)
Q Consensus       195 --------~i~i~d~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~g~~--d~~i~v~d~~~~~~~~~--~~~  257 (403)
                              .+.++|+.+++.... ..    ....-+..+.|.++++.+++......  ...+.++|..++....+  ...
T Consensus       151 ~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~  230 (353)
T PF00930_consen  151 AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS  230 (353)
T ss_dssp             TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred             CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence                    234455544433211 01    11122344677777664555443322  23455567766544332  223


Q ss_pred             CCce---EEEEEc-CCCCE-EEEEeCCCc-EEEEEEcCCCcEEEEEecCCCcccEEE-EEeCCCCCEEE-EEeC--CCcE
Q 015650          258 DSRI---ACFALT-QDGQL-LATSSTKGT-LVRIFNTLDGTLLQEVRRGADRAEIYS-LAFSSNAQWLA-VSSD--KGTV  327 (403)
Q Consensus       258 ~~~i---~~~~~s-p~g~~-l~s~~~dg~-~i~iwd~~~~~~~~~~~~~~~~~~v~~-l~~s~d~~~l~-s~~~--dg~v  327 (403)
                      ...|   ..+.|. +++.. |.....+|- .|.+++...+.. +.+..  ..-.|.. +.|+++++.|. ++..  -+.-
T Consensus       231 ~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~--G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r  307 (353)
T PF00930_consen  231 DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTS--GDWEVTSILGWDEDNNRIYFTANGDNPGER  307 (353)
T ss_dssp             SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS---SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred             CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ecccc--CceeecccceEcCCCCEEEEEecCCCCCce
Confidence            3333   255554 55554 444556664 266667655553 34443  2345644 77888887665 4443  2345


Q ss_pred             EEEEeecC
Q 015650          328 HVFNLKVN  335 (403)
Q Consensus       328 ~iwd~~~~  335 (403)
                      +||.+.-.
T Consensus       308 ~lY~v~~~  315 (353)
T PF00930_consen  308 HLYRVSLD  315 (353)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEEeC
Confidence            55555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.30  E-value=4.1e-06  Score=77.45  Aligned_cols=201  Identities=14%  Similarity=0.131  Sum_probs=127.9

Q ss_pred             cccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~  155 (403)
                      -.+.+|..+|+.+.|+|.. ..+++++ |..+..||+..-...+....  .-......+.|+-. ...+++...      
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~--~w~s~asqVkwnyk~p~vlasshg------  179 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS--SWRSAASQVKWNYKDPNVLASSHG------  179 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee--cccccCceeeecccCcchhhhccC------
Confidence            4578999999999999876 4678887 55599999976544332222  23334455666543 334444433      


Q ss_pred             ceEEEEECCCC-ceeEEEe-cCCceeEEEEecC--ceEEE--ecCeEEEEEcCCc--eeeeEeeccCCCceeEEEeeCCC
Q 015650          156 NKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRD--RIIVV--LEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       156 ~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~--~~~~~--~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      +.|.+||.+.| .++..++ |...|..+.|+.-  +..+.  .|++|+.||....  +..+.+ ....++..-++.|-++
T Consensus       180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcceeccccccCc
Confidence            68999999877 5666777 7778888888763  33333  5999999997653  222222 2234555556667666


Q ss_pred             eEEEEeeCCccCeEEEEEccC-----------CceeEEeecCCceEEEEEcCC----------CCEEEEEeCCCcEEEEE
Q 015650          228 SLVLVCPGLQKGQVRVEHYAS-----------KRTKFIMAHDSRIACFALTQD----------GQLLATSSTKGTLVRIF  286 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~-----------~~~~~~~~~~~~i~~~~~sp~----------g~~l~s~~~dg~~i~iw  286 (403)
                      +.++.-.- .+..+.+++-+.           ..+..+.+|...|....|-..          .-.|++=+.|.. +++|
T Consensus       259 g~~~mp~~-G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~-lrlW  336 (1081)
T KOG0309|consen  259 GYCIMPMV-GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT-LRLW  336 (1081)
T ss_pred             eeEecccc-CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc-eEee
Confidence            65544311 122344443332           346778899888766655432          226889999999 9999


Q ss_pred             EcCC
Q 015650          287 NTLD  290 (403)
Q Consensus       287 d~~~  290 (403)
                      -+.+
T Consensus       337 pI~~  340 (1081)
T KOG0309|consen  337 PIDS  340 (1081)
T ss_pred             eccH
Confidence            8753

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=0.0034  Score=57.14  Aligned_cols=241  Identities=14%  Similarity=0.109  Sum_probs=158.3

Q ss_pred             CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCCCCceEEEEEC
Q 015650           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ....+.+.+++..+....  .+.+.+.+..  ......... .....-..+..++.+. ..+....+     +.|.+.|.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~  103 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDT  103 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc--cceeeeecc-CCCccccceeeCCCCCeEEEecCCC-----CeEEEEcC
Confidence            455677888885554443  2224444433  111112121 1112233444444443 44444444     79999998


Q ss_pred             CCCceeEEEecCCceeEEEEecCceEEE---e---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      .+.+......-......+++++++..+.   .   ++++.+.|-.+.+.+........+ ..+++.|++...+++.  ..
T Consensus       104 ~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~--~~  180 (381)
T COG3391         104 ATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN--SD  180 (381)
T ss_pred             cccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe--cC
Confidence            8888777777555778899999986555   2   578999998888888776554445 7889999999877765  46


Q ss_pred             cCeEEEEEccCCceeE-----EeecCCceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          238 KGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~-----~~~~~~~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                      ++.|.+.|.....+..     ...-......+.++|+|.+++.....   +. +.+.|..++............ ....+
T Consensus       181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~~~-~~~~v  258 (381)
T COG3391         181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVGSG-APRGV  258 (381)
T ss_pred             CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccccC-CCCce
Confidence            8899999977765553     11222334678899999977665544   47 999999888877652221122 45678


Q ss_pred             EeCCCCCEEEEEe-CCCcEEEEEeecCCCCCC
Q 015650          310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       310 ~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~  340 (403)
                      ..+|+|+.+.+.. ..+.+.+-|..+......
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            9999999988874 458899999888775444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.00047  Score=65.49  Aligned_cols=201  Identities=15%  Similarity=0.167  Sum_probs=126.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECC
Q 015650           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      .|+|  |++.+..++.|+..| |.+.+-  . ....+.+. .+...+....+.- +..++++.+.|..-.+-.++||+++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~--s-~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS--S-FQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc--c-ceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            5555  678888999998444 766652  2 22224444 3334444444444 4366666665522111279999986


Q ss_pred             CC------cee---EEEe-----cCCceeEEEEecCceEEE---ecCeEEEEEcC----CceeeeEeeccCCCceeEEEe
Q 015650          165 QS------RCI---GELS-----FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA----DLKLLHQIETIANPKGLCAVS  223 (403)
Q Consensus       165 ~~------~~~---~~~~-----~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~  223 (403)
                      .-      +++   +.+.     ...++..++.+.+-..++   .+|.|..+.=.    .+...........+|+.+++.
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence            43      233   2222     245688899998876666   58998888521    122222233456789999999


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEccCCc--eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      .++...++++   .-..|.+|.+.++.  ...+..|+..+.|-.|++....+++++...  |.+||.....+-..+.
T Consensus       181 ~d~~s~lFv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  181 SDGKSVLFVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cCCceeEEEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeec
Confidence            9988754554   34689999988755  455778888999999987665466665554  9999987555555555

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.21  E-value=6.8e-07  Score=84.12  Aligned_cols=194  Identities=9%  Similarity=0.064  Sum_probs=139.4

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe-----cCe
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-----EQK  195 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-----d~~  195 (403)
                      +.+. .+....++++|+.+...++.|.-.     |.|+++++.+|....... |..+|+.+.-+.||.....     .--
T Consensus      1095 ~~fr-d~~~~fTc~afs~~~~hL~vG~~~-----Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1095 RSFR-DETALFTCIAFSGGTNHLAVGSHA-----GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hhhh-ccccceeeEEeecCCceEEeeecc-----ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            3444 677889999999998888888877     999999999999888888 9999999999999887762     224


Q ss_pred             EEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eE-Ee---ecCCceEEEEEcCC
Q 015650          196 IFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KF-IM---AHDSRIACFALTQD  269 (403)
Q Consensus       196 i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~-~~---~~~~~i~~~~~sp~  269 (403)
                      ..+|++.. +...+.+..    -.++.|+......++.+   ......+||+.+... .+ +.   +....-++..|+|+
T Consensus      1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt---~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGT---EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             HHHhccccccCccccccc----cceeehhhhHHHHHhcc---cccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence            66899764 555555543    24566666544434443   446789999998442 22 21   22223477899999


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650          270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       270 g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      ..+++   +||.   +||++..+.++.|..-  . .-..=.|+|.|..++.-+     -|||+++.+..+...
T Consensus      1242 D~LIl---ndGv---LWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1242 DTLIL---NDGV---LWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred             cceEe---eCce---eeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence            98775   6775   9999988888777641  1 222346999999888765     489999988766554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=0.0017  Score=56.62  Aligned_cols=211  Identities=15%  Similarity=0.075  Sum_probs=130.4

Q ss_pred             EEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEee-eCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650           92 SFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        92 ~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~  168 (403)
                      .|.++...|.-..  .+.|.-|+..+++..   .+.  ....+.+... ...+.++++ .       .-+.+++.+++..
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---~~~--~p~~~~~~~~~d~~g~Lv~~-~-------~g~~~~~~~~~~~   97 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR---VFP--SPGGFSSGALIDAGGRLIAC-E-------HGVRLLDPDTGGK   97 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE---EEE--CCCCcccceeecCCCeEEEE-c-------cccEEEeccCCce
Confidence            5777877666665  333777777644332   222  2233344433 344444444 3       3477888776665


Q ss_pred             eEEEe------cCCceeEEEEecCceEEEec--------------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          169 IGELS------FRSEVRSVKLRRDRIIVVLE--------------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       169 ~~~~~------~~~~i~~~~~~~~~~~~~~d--------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      +..+.      .....+.+...|+|.+.+.+              |.|+.+|. .+..++.+..+-..-+.++|+|+++.
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence            43332      23456788899999888832              23555554 45555555443444467999999998


Q ss_pred             EEEEeeCCccCeEEEEEccC------Cc--eeEEeecCCceEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCcEEEEEec
Q 015650          229 LVLVCPGLQKGQVRVEHYAS------KR--TKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~------~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~~~~~~~  299 (403)
                      +|++=  +..+.|.-|++..      ++  ........+..-.++...+|.+.+++...| . |.+|+.. ++++..+..
T Consensus       177 ly~aD--T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         177 LYVAD--TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             EEEEe--CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEEC
Confidence            87764  3457888887762      11  112223456667888888998876555554 6 9999976 999999986


Q ss_pred             CCCcccEEEEEeC-CCCCEEEEEe
Q 015650          300 GADRAEIYSLAFS-SNAQWLAVSS  322 (403)
Q Consensus       300 ~~~~~~v~~l~~s-~d~~~l~s~~  322 (403)
                      ..  ..+++++|- ++.+.|.+.+
T Consensus       253 P~--~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         253 PV--KRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CC--CCCccceEeCCCcCEEEEEe
Confidence            42  677888885 4556555444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.19  E-value=0.0011  Score=64.43  Aligned_cols=127  Identities=16%  Similarity=0.209  Sum_probs=84.1

Q ss_pred             ceEEEEECCCCceeEEEe-cC-CceeEEEEe-------cCceEEE-ecCeEEEEEcCCce--eeeE-eec--cCCCceeE
Q 015650          156 NKVMIWDDHQSRCIGELS-FR-SEVRSVKLR-------RDRIIVV-LEQKIFVYNFADLK--LLHQ-IET--IANPKGLC  220 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~-~~i~~~~~~-------~~~~~~~-~d~~i~i~d~~~~~--~~~~-~~~--~~~~~~~~  220 (403)
                      ..|+-.|++.|+.+..+. +. .+|..++-.       +...++. .++.+..||.+-..  ++.. ...  ......++
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~  583 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF  583 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence            789999999999999998 33 235554332       3344555 68899999988532  2211 111  12233444


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~  288 (403)
                      +-+.+|  . +|. |+.+|.||+||--+.+- ..+.+-..+|..|..+.||++|++.|.. . |.|++.
T Consensus       584 aTt~~G--~-iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-y-LlLi~t  646 (794)
T PF08553_consen  584 ATTEDG--Y-IAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-Y-LLLIDT  646 (794)
T ss_pred             EecCCc--e-EEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-e-EEEEEE
Confidence            444444  2 443 56899999999554333 3456778999999999999999876654 4 777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.17  E-value=0.00069  Score=61.95  Aligned_cols=115  Identities=17%  Similarity=0.245  Sum_probs=78.7

Q ss_pred             ecCCceeEEEEecCc--eEEE------ecC----eEEEEEcCCcee--eeEee-ccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          173 SFRSEVRSVKLRRDR--IIVV------LEQ----KIFVYNFADLKL--LHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       173 ~~~~~i~~~~~~~~~--~~~~------~d~----~i~i~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      ..+....++.|+...  .+..      .+|    .-.+|++...+.  +.... .....+.+++++|+.+.+++.|   .
T Consensus       203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC---~  279 (545)
T PF11768_consen  203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC---E  279 (545)
T ss_pred             EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe---c
Confidence            345556677777532  2222      133    244666654432  21111 2456788999999998877665   9


Q ss_pred             cCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (403)
                      ||.|.+||...+..... ...-..+.++|+|+|.++++|+..|. |.+||+.-..
T Consensus       280 DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALsp  332 (545)
T PF11768_consen  280 DGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALSP  332 (545)
T ss_pred             CCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeecCc
Confidence            99999999887654444 34566789999999999999999999 9999986543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.16  E-value=0.0044  Score=58.53  Aligned_cols=229  Identities=12%  Similarity=0.085  Sum_probs=127.6

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcc---eeEE-EEeeeCCeEEEeeCC--------CCCCCCCceEEEEECC
Q 015650           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG---IGVV-EMLFRCNILALVGGG--------PDPQYPLNKVMIWDDH  164 (403)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~~~s~~--------~d~~~~~~~i~iwd~~  164 (403)
                      ..++.++ ++.|..+|.++++.+....+. .+.   ..+. ...+.. +.+++...        .+     +.+.-+|..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~-----g~v~alD~~  183 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVR-----GALRAYDVE  183 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEEEC-CEEEEeccccccccCCCC-----cEEEEEECC
Confidence            4455554 555899999998888766554 211   0011 111222 33334321        23     789999999


Q ss_pred             CCceeEEEecC-Cc--------------------e-eEEEEec-CceEEE--ecC------------------eEEEEEc
Q 015650          165 QSRCIGELSFR-SE--------------------V-RSVKLRR-DRIIVV--LEQ------------------KIFVYNF  201 (403)
Q Consensus       165 ~~~~~~~~~~~-~~--------------------i-~~~~~~~-~~~~~~--~d~------------------~i~i~d~  201 (403)
                      +|+.+-.++.. ..                    + ....+.+ .+.+++  .++                  .|..+|+
T Consensus       184 TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~  263 (488)
T cd00216         184 TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA  263 (488)
T ss_pred             CCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence            99988877621 10                    0 1233333 344444  233                  7999999


Q ss_pred             CCceeeeEeeccCCCc------eeEEEe----eCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCC
Q 015650          202 ADLKLLHQIETIANPK------GLCAVS----QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ  271 (403)
Q Consensus       202 ~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~  271 (403)
                      ++|+.+..++......      ....+.    -++....++..+..+|.+...|.++++..-.....  ...++.+|  .
T Consensus       264 ~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~  339 (488)
T cd00216         264 DTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--G  339 (488)
T ss_pred             CCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--c
Confidence            9999988875322211      111111    12332223333557899999999987754322111  11233344  2


Q ss_pred             EEEEE------------------eCCCcEEEEEEcCCCcEEEEEecCCCc------ccE--EEEEeCCCCCEEEEEeCCC
Q 015650          272 LLATS------------------STKGTLVRIFNTLDGTLLQEVRRGADR------AEI--YSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       272 ~l~s~------------------~~dg~~i~iwd~~~~~~~~~~~~~~~~------~~v--~~l~~s~d~~~l~s~~~dg  325 (403)
                      .++.+                  ..+|. |.-.|+.+|+.+-+.....+.      ...  ..+..  .+..|++++.||
T Consensus       340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG  416 (488)
T cd00216         340 LVYLGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADG  416 (488)
T ss_pred             eEEEccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCC
Confidence            23322                  23566 888888888877666532111      111  11222  557888889999


Q ss_pred             cEEEEEeecCCCCCC
Q 015650          326 TVHVFNLKVNSGSAR  340 (403)
Q Consensus       326 ~v~iwd~~~~~~~~~  340 (403)
                      .|+.+|.++++..-+
T Consensus       417 ~l~ald~~tG~~lW~  431 (488)
T cd00216         417 YFRAFDATTGKELWK  431 (488)
T ss_pred             eEEEEECCCCceeeE
Confidence            999999999986443

The alignment model contains an 8-bladed beta-propeller.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=0.00025  Score=61.37  Aligned_cols=244  Identities=9%  Similarity=0.068  Sum_probs=129.2

Q ss_pred             ccccCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP  154 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~  154 (403)
                      ..++.+|...|..++|+|..+ ++..++ ++.|+|.|+++....  ..+.  ....+++++|.-+ ..++..|...    
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--ssy~--a~~~~wSC~wDlde~h~IYaGl~n----  257 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--SSYI--AYNQIWSCCWDLDERHVIYAGLQN----  257 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee--ehee--ccCCceeeeeccCCcceeEEeccC----
Confidence            347788899999999999887 566666 777999999887655  3443  2377888888765 4567777777    


Q ss_pred             CceEEEEECCCCce-eEEEe---cCCceeEEEEe------cCceEEE-ecCeEEEEEcCC--ceeeeEeecc-CCCceeE
Q 015650          155 LNKVMIWDDHQSRC-IGELS---FRSEVRSVKLR------RDRIIVV-LEQKIFVYNFAD--LKLLHQIETI-ANPKGLC  220 (403)
Q Consensus       155 ~~~i~iwd~~~~~~-~~~~~---~~~~i~~~~~~------~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~-~~~~~~~  220 (403)
                       |.|.|||++..+- +..+.   ...+|..++.-      +-+.+++ .---+..|++.-  +.....++.. .+....+
T Consensus       258 -G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cism  336 (463)
T KOG1645|consen  258 -GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISM  336 (463)
T ss_pred             -ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeee
Confidence             9999999976532 22222   23344433322      2223333 222334444322  1111111111 1222222


Q ss_pred             EEeeCCCeEEEEeeCC-c---cCeEEEE-EccCCc-e-eEEeec-CCc------eEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650          221 AVSQGVGSLVLVCPGL-Q---KGQVRVE-HYASKR-T-KFIMAH-DSR------IACFALTQDGQLLATSSTKGTLVRIF  286 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~-~---d~~i~v~-d~~~~~-~-~~~~~~-~~~------i~~~~~sp~g~~l~s~~~dg~~i~iw  286 (403)
                      ...+..+++++.+-.. +   -..|... |.+.+. + ..-..+ ...      -..+.-.++.++|+.-+.+...+.+|
T Consensus       337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~  416 (463)
T KOG1645|consen  337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ  416 (463)
T ss_pred             eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence            3333334444333110 0   0111110 111111 0 000111 000      01122234556665444333339999


Q ss_pred             EcCCCcEEEEEecCCCcccEEEEEeCCC--CCEEEEEeCCCcEEEEEeec
Q 015650          287 NTLDGTLLQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~v~~l~~s~d--~~~l~s~~~dg~v~iwd~~~  334 (403)
                      |..+++.++++..   ..+|.++.....  +.+|++-. |..++||..+.
T Consensus       417 D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  417 DPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             ccchhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence            9999999999984   478888876542  34666655 55799987654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.11  E-value=0.0026  Score=57.38  Aligned_cols=234  Identities=12%  Similarity=0.070  Sum_probs=132.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCc----------------ceeEEEEeeeCCeEEEeeCC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG----------------GIGVVEMLFRCNILALVGGG  148 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~s~~  148 (403)
                      ...+....|+|+|+.+|...++.|.+++..++.... .+.. +.                -..-..+.|+|++..|+...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~-lT~d-g~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQ-LTTD-GEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEE-SES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCCeEE-eccc-cceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            567788999999999999999999999886663331 1221 10                01123456777765544322


Q ss_pred             CCCC----------------C---------------CCceEEEEECCCCceeE-EEe-----cCCceeEEEEecCce-EE
Q 015650          149 PDPQ----------------Y---------------PLNKVMIWDDHQSRCIG-ELS-----FRSEVRSVKLRRDRI-IV  190 (403)
Q Consensus       149 ~d~~----------------~---------------~~~~i~iwd~~~~~~~~-~~~-----~~~~i~~~~~~~~~~-~~  190 (403)
                      .|..                +               +.-.+.|+|+.+++... ...     ....+..+.|.+++. ++
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            2200                0               11346667877776432 111     244578899999988 44


Q ss_pred             E--e-----cCeEEEEEcCCceeeeEee-ccCCCc---eeEEEe-eCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC
Q 015650          191 V--L-----EQKIFVYNFADLKLLHQIE-TIANPK---GLCAVS-QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD  258 (403)
Q Consensus       191 ~--~-----d~~i~i~d~~~~~~~~~~~-~~~~~~---~~~~~~-~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~  258 (403)
                      +  .     .-.+.++|..+++....+. .....+   ....+. +++..++..+....-..|.+++..++..+.+....
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~  279 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD  279 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc
Confidence            4  2     2257788887765433332 222332   345554 77777776664222334556677777777776666


Q ss_pred             CceEE-EEEcCCCCEEE-EEeCCC--c-EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650          259 SRIAC-FALTQDGQLLA-TSSTKG--T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       259 ~~i~~-~~~sp~g~~l~-s~~~dg--~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      -.|.. +.++++++.|+ ++..++  . .|+.-++..+..+..+....  ..-..+.|||+|++++-.+
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~--~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED--GDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS--STTEEEEE-TTSSEEEEEE
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC--CCceEEEECCCCCEEEEEE
Confidence            67754 67888877665 444322  2 15555666234445555321  1126899999999887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.11  E-value=0.00037  Score=67.54  Aligned_cols=132  Identities=14%  Similarity=0.250  Sum_probs=93.9

Q ss_pred             cCeEEEEEcCCceeeeEeeccCCCceeEEEeeC-------CCeEEEEeeCCccCeEEEEEccCCc--eeEEe----ecCC
Q 015650          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-------VGSLVLVCPGLQKGQVRVEHYASKR--TKFIM----AHDS  259 (403)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~~----~~~~  259 (403)
                      .+.|+-.|++.|+.+..++.+... ....+.|+       +...++..   .+..+..||.|-..  +..-.    ....
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl---s~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL---SDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE---CCCceEEeccCCCCCceeeccccccccCC
Confidence            468999999999999999876643 24555553       33445543   67889999998732  22111    2345


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      ..+|++-+.+| +||.|+.+|. ||+||- .|+.-++.-.+ -..+|.+|..+.||++|++.+ +..|.+++..
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            67888888777 6889999999 999994 44433333322 457999999999999987766 5578888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.0012  Score=62.75  Aligned_cols=188  Identities=17%  Similarity=0.252  Sum_probs=115.4

Q ss_pred             eeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCc-eeEEEEecCceEEEe---c-C----eEEEEEcCCc--
Q 015650          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE-VRSVKLRRDRIIVVL---E-Q----KIFVYNFADL--  204 (403)
Q Consensus       137 ~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~-i~~~~~~~~~~~~~~---d-~----~i~i~d~~~~--  204 (403)
                      +++++..++-|..+     |.|.+.+ ..-+.++.++ ++.. |..+....+..++++   | +    .+++|+++.-  
T Consensus        31 ~~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   31 CSSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EcCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            44555566666666     7777776 3344546666 5555 444544455455552   2 2    6999998752  


Q ss_pred             ----eeee--Eeec-----cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC---C--ceeEEeecCCceEEEEEcC
Q 015650          205 ----KLLH--QIET-----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---K--RTKFIMAHDSRIACFALTQ  268 (403)
Q Consensus       205 ----~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~---~--~~~~~~~~~~~i~~~~~sp  268 (403)
                          +++.  .+.+     ...++.+++++.+-.  .+++ |-.+|.|..+.-+-   .  +.......+.+|+.+.+..
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence                2331  1222     244567788887744  3443 66889999885332   1  2222233467899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEEcCCCcE-EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          269 DGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       269 ~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      +++.++....... |.+|.+....+ ...+..  |...++|..+++....+++++ +..|.+|+.+..+.
T Consensus       182 d~~s~lFv~Tt~~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  182 DGKSVLFVATTEQ-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP  247 (933)
T ss_pred             CCceeEEEEecce-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence            9987333333445 99999874442 333442  667889999987655566665 44699999986664

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.09  E-value=0.0013  Score=61.70  Aligned_cols=102  Identities=11%  Similarity=-0.081  Sum_probs=72.5

Q ss_pred             ecCceEEE-ecCeEEEEEcCC-----ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce------
Q 015650          184 RRDRIIVV-LEQKIFVYNFAD-----LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT------  251 (403)
Q Consensus       184 ~~~~~~~~-~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~------  251 (403)
                      .++|++.. .+++|.+.|.++     .+.+..+.... ....+.++||++.+++  +|..+.++.|+|+...+.      
T Consensus       285 vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyV--anklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIA--NGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEECCCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEE--eCCCCCcEEEEEChhhhhhhhccC
Confidence            44666555 567899999988     35566665544 3477899999986544  356789999999987331      


Q ss_pred             -------eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650          252 -------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (403)
Q Consensus       252 -------~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (403)
                             ....- ...-...+|+++|....+-.-|.. |..||+..
T Consensus       362 ~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsq-v~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQ-IVKWNIEA  405 (635)
T ss_pred             CccceEEEeecc-CCCcceEEECCCCCEEEeEeecce-eEEEehHH
Confidence                   11222 233456789999988888888998 99999875

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.08  E-value=0.0032  Score=54.72  Aligned_cols=196  Identities=13%  Similarity=0.142  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEE-------------ecccCcceeEEEEe---eeCCeEEEeeCCCCC
Q 015650           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-------------DFERGGGIGVVEML---FRCNILALVGGGPDP  151 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~-------------~~~~~~~~~v~~~~---~~~~~~~~~s~~~d~  151 (403)
                      |..+...++-..|++-+|+.+.+++++........             .+.  ....+..++   .......++.+-.  
T Consensus        38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~k--  113 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVK--  113 (275)
T ss_pred             EEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccccccccc--ccCCeeEEeeccccccceEEEEEEC--
Confidence            99999999888888888888999998654433211             121  222333333   2223344444443  


Q ss_pred             CCCCceEEEEECCCC-----ceeEEEecCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCC---------c
Q 015650          152 QYPLNKVMIWDDHQS-----RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP---------K  217 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~  217 (403)
                          ..|.+|.....     +..+++.....+..++|..+...++..+...+.|+.++.....+......         .
T Consensus       114 ----k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~  189 (275)
T PF00780_consen  114 ----KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS  189 (275)
T ss_pred             ----CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence                58888877653     46667778899999999977777778888999999977654433211111         1


Q ss_pred             eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee--EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~  295 (403)
                      ..+.+-.-++..++++   .+..-...|..+...+  .+.- .....++++  ...||+..+. +. |.||++.++++++
T Consensus       190 ~~~~~~~~~~~e~Ll~---~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~-~~-iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  190 KPLGIFQLSDNEFLLC---YDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSS-NS-IEVRSLETGELVQ  261 (275)
T ss_pred             CceEEEEeCCceEEEE---ecceEEEEcCCCCcCcccEEEc-CCchhEEEE--ECCEEEEECC-CE-EEEEECcCCcEEE
Confidence            1122222222234444   3444444555553332  2322 224556666  3457776555 55 9999999999999


Q ss_pred             EEec
Q 015650          296 EVRR  299 (403)
Q Consensus       296 ~~~~  299 (403)
                      .+..
T Consensus       262 ~i~~  265 (275)
T PF00780_consen  262 TIPL  265 (275)
T ss_pred             EEEC
Confidence            8874

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.06  E-value=0.0014  Score=60.98  Aligned_cols=202  Identities=9%  Similarity=0.074  Sum_probs=116.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ...+...|.--++...+++++.|++.| +.+|+-..+... ..... +....+.....+++..+++.++..     |.|.
T Consensus        29 ~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~-~~~~~~~~~~vs~~e~lvAagt~~-----g~V~  101 (726)
T KOG3621|consen   29 PGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNE-GATGITCVRSVSSVEYLVAAGTAS-----GRVS  101 (726)
T ss_pred             cccCcceEEEEEeecCCceEEEecccceEEEEecCchhhh-ccccc-CccceEEEEEecchhHhhhhhcCC-----ceEE
Confidence            344566676677788899999999877 899986655433 22332 344555666677777777777777     9999


Q ss_pred             EEECCCCcee-----EEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCc----eeeeEeeccCCCceeEEEeeC
Q 015650          160 IWDDHQSRCI-----GELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL----KLLHQIETIANPKGLCAVSQG  225 (403)
Q Consensus       160 iwd~~~~~~~-----~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~  225 (403)
                      ++-+..+.+-     ....  |+..|++++|++++..++   ..|+|.+-.+...    ...+.+-...  -.++.+..-
T Consensus       102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d--s~IVQlD~~  179 (726)
T KOG3621|consen  102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED--SEIVQLDYL  179 (726)
T ss_pred             eehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC--cceEEeecc
Confidence            9987664321     1122  678999999999999888   3578887777651    1111111111  234444444


Q ss_pred             CCeEEEEeeCCccCeEEEEEccCCceeEEe--ecCCc-eEEEEEcCC----CCEEEEEeCCCcEEEEEEcC-CCcEEEEE
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSR-IACFALTQD----GQLLATSSTKGTLVRIFNTL-DGTLLQEV  297 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~-i~~~~~sp~----g~~l~s~~~dg~~i~iwd~~-~~~~~~~~  297 (403)
                      ...+++++    --...+++.+.+.+..+-  ..++. -...+|-|.    ..-.+.++.-|  .|+|... .|+.+++.
T Consensus       180 q~~LLVSt----l~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~Th  253 (726)
T KOG3621|consen  180 QSYLLVST----LTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKTH  253 (726)
T ss_pred             cceehHhh----hhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEee
Confidence            44333332    123445555554433321  12221 223445443    33444556666  5888764 35554443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.05  E-value=0.0061  Score=55.97  Aligned_cols=169  Identities=14%  Similarity=0.171  Sum_probs=92.1

Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEee--ccCCCceeE---EEeeCCCe
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE--TIANPKGLC---AVSQGVGS  228 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~  228 (403)
                      .|+||+ ..|+++..+. ..+.|.++.|+.+..+++  .||.+++||+. |+....+.  .....+...   +....+.+
T Consensus        62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence            588888 5677787777 448999999999877777  69999999986 33311111  011111111   11222244


Q ss_pred             EEEEeeCCccCeEEEEEccCCc--eeEEe---e-------cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650          229 LVLVCPGLQKGQVRVEHYASKR--TKFIM---A-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~--~~~~~---~-------~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (403)
                      +++.+   .++.+.+..--...  .+.+.   .       +........++.+....+....++. +.+.+-...+.   
T Consensus       140 ivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~---  212 (410)
T PF04841_consen  140 IVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ---  212 (410)
T ss_pred             EEEEC---CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence            44443   33444443222211  11111   0       0000000223444444444444444 55333222111   


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      +.   ..+++..|+.||+|++||.-..+|.+.+...+-.+.
T Consensus       213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~  250 (410)
T PF04841_consen  213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK  250 (410)
T ss_pred             cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce
Confidence            21   236899999999999999999999998887655544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.04  E-value=0.00078  Score=61.85  Aligned_cols=210  Identities=12%  Similarity=0.090  Sum_probs=107.3

Q ss_pred             ceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe--cCeEEEEEcCCcee
Q 015650          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKL  206 (403)
Q Consensus       129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--d~~i~i~d~~~~~~  206 (403)
                      ......+.++|++.+++.++.      |...|+.....+..    ..+.-....|...+.+.+.  .++|.++.--+.+.
T Consensus        32 ~~~p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k----~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNK----AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEET------TEEEEEETTTTEEE----EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred             CcCCeeEEECCCCCEEEEEcC------CEEEEEEccCCccc----ccCceeEEEEecCccEEEEECCCeEEEEEcCcccc
Confidence            345678889999887777554      78888873332221    2244557889998888884  57899964222333


Q ss_pred             eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (403)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw  286 (403)
                      ...++...   ..-.+-. |. ++.+.   .++.|.+||+.+++...-.... .|..+.|+++|.+++..+.+.  +.|+
T Consensus       102 ~k~i~~~~---~~~~If~-G~-LL~~~---~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~--i~il  170 (443)
T PF04053_consen  102 VKSIKLPF---SVEKIFG-GN-LLGVK---SSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDS--IYIL  170 (443)
T ss_dssp             T-----SS----EEEEE--SS-SEEEE---ETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-S--EEEE
T ss_pred             ceEEcCCc---ccceEEc-Cc-EEEEE---CCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCe--EEEE
Confidence            23333211   1222222 33 33332   3458999999986654333222 389999999999999988775  7777


Q ss_pred             EcCCC-----------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccc
Q 015650          287 NTLDG-----------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS  355 (403)
Q Consensus       287 d~~~~-----------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (403)
                      +....           .....+..  -...|.+..|..|  .++-.+.. +|+.  +-.|+.                  
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~------------------  225 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET------------------  225 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE------------------
T ss_pred             EecchhcccccccCchhceEEEEE--ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc------------------
Confidence            64322           02233321  1357888999765  44444444 6766  555551                  


Q ss_pred             cccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                                        ..++--+.+++.+.+.++.+.|.....|+
T Consensus       226 ------------------~~i~~ld~~~yllgy~~~~~~ly~~Dr~~  254 (443)
T PF04053_consen  226 ------------------GIIAHLDKPLYLLGYLPKENRLYLIDRDG  254 (443)
T ss_dssp             ------------------EEEEE-SS--EEEEEETTTTEEEEE-TT-
T ss_pred             ------------------ceEEEcCCceEEEEEEccCCEEEEEECCC
Confidence                              22333355677777777777777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=9.2e-05  Score=69.54  Aligned_cols=122  Identities=17%  Similarity=0.199  Sum_probs=91.7

Q ss_pred             CCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC
Q 015650          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d  314 (403)
                      |..+|.|++++..... .....|...      .-+|.++++|+.||+ |.|..+-+.+...++.   ...++.+++++||
T Consensus        55 GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~~~~~~d---f~rpiksial~Pd  123 (846)
T KOG2066|consen   55 GTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDDEITQYD---FKRPIKSIALHPD  123 (846)
T ss_pred             ccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCccceeEe---cCCcceeEEeccc
Confidence            6688999999987765 444445443      668999999999999 9999998888877776   4478999999998


Q ss_pred             -----CCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEec
Q 015650          315 -----AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (403)
Q Consensus       315 -----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs  389 (403)
                           .+++++|+..| +.++.-+=-++                                 |.-..+..-+|.|.++.| 
T Consensus       124 ~~~~~sk~fv~GG~ag-lvL~er~wlgn---------------------------------k~~v~l~~~eG~I~~i~W-  168 (846)
T KOG2066|consen  124 FSRQQSKQFVSGGMAG-LVLSERNWLGN---------------------------------KDSVVLSEGEGPIHSIKW-  168 (846)
T ss_pred             hhhhhhhheeecCcce-EEEehhhhhcC---------------------------------ccceeeecCccceEEEEe-
Confidence                 56899999888 77765433221                                 111123444678988888 


Q ss_pred             cCCCEEEEEccCCC
Q 015650          390 HQKNTVVILGMDGR  403 (403)
Q Consensus       390 ~d~~~l~~~~~dG~  403 (403)
                       .|+.+|-++.+|.
T Consensus       169 -~g~lIAWand~Gv  181 (846)
T KOG2066|consen  169 -RGNLIAWANDDGV  181 (846)
T ss_pred             -cCcEEEEecCCCc
Confidence             8899999998884

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0071  Score=55.10  Aligned_cols=216  Identities=13%  Similarity=0.096  Sum_probs=143.7

Q ss_pred             CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEE--EeeCC-CCCCCCCceEEEE
Q 015650           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA--LVGGG-PDPQYPLNKVMIW  161 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~s~~-~d~~~~~~~i~iw  161 (403)
                      .-..+++++++..+....  ++.|.+.|..+.........  +.  .-..+.+++++..  ++-.. .+     +.+.+.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsvi  145 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSVI  145 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEecccCC-----ceEEEE
Confidence            345678888887544443  56699999766554422222  22  4556666666533  33332 25     899999


Q ss_pred             ECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeee-E----eeccCCCceeEEEeeCCCeEEE
Q 015650          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH-Q----IETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      |..+++.+.... ...+ ..+++.|++..+.    .++.|.+.|.......+ .    +.. ...-..+.+.+++...++
T Consensus       146 d~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV  223 (381)
T COG3391         146 DAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYV  223 (381)
T ss_pred             eCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEE
Confidence            999999888865 3334 8999999998665    37899999977655442 1    211 222356899999999888


Q ss_pred             EeeCCccCeEEEEEccCCceeEEee-cCC-ceEEEEEcCCCCEEEEEeCC-CcEEEEEEcCCCcEEEEEecCCCc-ccEE
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIMA-HDS-RIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQEVRRGADR-AEIY  307 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~~-~~~-~i~~~~~sp~g~~l~s~~~d-g~~i~iwd~~~~~~~~~~~~~~~~-~~v~  307 (403)
                      +..++.++.+...|...+....... -.. ....+.++|+|+++...... +. +.+-|..+......+..+... ..+.
T Consensus       224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~  302 (381)
T COG3391         224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPV  302 (381)
T ss_pred             EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccce
Confidence            8755445789999988877655421 111 45678999999999887554 66 999999888887776643221 2355


Q ss_pred             EEEeCCC
Q 015650          308 SLAFSSN  314 (403)
Q Consensus       308 ~l~~s~d  314 (403)
                      .+++.+.
T Consensus       303 ~~~~~~~  309 (381)
T COG3391         303 SIAISPL  309 (381)
T ss_pred             eccceee
Confidence            6666554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.01  E-value=0.0066  Score=51.09  Aligned_cols=195  Identities=12%  Similarity=0.083  Sum_probs=104.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      .+.+-...+..|+|+|+...|++.. +.+ |..++.+ ++.+....+.  .....-.+.+..++.++++..++     +.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~--g~~D~EgI~y~g~~~~vl~~Er~-----~~   87 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD--GFGDYEGITYLGNGRYVLSEERD-----QR   87 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S--S-SSEEEEEE-STTEEEEEETTT-----TE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC--CCCCceeEEEECCCEEEEEEcCC-----Cc
Confidence            3455556799999999876555554 444 5555543 3434333443  45567788888889988888777     89


Q ss_pred             EEEEECCCCc------eeEEEe------cCCceeEEEEecC-ceEEE--ecCeEEEEEcCC---ceeeeEe--------e
Q 015650          158 VMIWDDHQSR------CIGELS------FRSEVRSVKLRRD-RIIVV--LEQKIFVYNFAD---LKLLHQI--------E  211 (403)
Q Consensus       158 i~iwd~~~~~------~~~~~~------~~~~i~~~~~~~~-~~~~~--~d~~i~i~d~~~---~~~~~~~--------~  211 (403)
                      +.++++....      ....+.      +...+..++|.+. +++++  ...-..+|.++.   ...+...        .
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~  167 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK  167 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred             EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence            9999883321      122232      2345899999996 44444  233344554432   1111111        1


Q ss_pred             ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC---------CceEEEEEcCCCCEEEEEeCCCcE
Q 015650          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTL  282 (403)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~---------~~i~~~~~sp~g~~l~s~~~dg~~  282 (403)
                      ........++++|..+++++.+  .....|..+|...+.+..+.-..         .....|+|+++|++.+ .++-+. 
T Consensus       168 ~~~~d~S~l~~~p~t~~lliLS--~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNl-  243 (248)
T PF06977_consen  168 LFVRDLSGLSYDPRTGHLLILS--DESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNL-  243 (248)
T ss_dssp             --SS---EEEEETTTTEEEEEE--TTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTE-
T ss_pred             ceeccccceEEcCCCCeEEEEE--CCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCce-
Confidence            1233457789999988888886  57889999996665444433221         2567899999997555 455554 


Q ss_pred             EEEE
Q 015650          283 VRIF  286 (403)
Q Consensus       283 i~iw  286 (403)
                      .++|
T Consensus       244 fy~f  247 (248)
T PF06977_consen  244 FYRF  247 (248)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.99  E-value=0.0073  Score=50.84  Aligned_cols=196  Identities=8%  Similarity=0.066  Sum_probs=111.7

Q ss_pred             EecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe---cCe
Q 015650          122 RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQK  195 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---d~~  195 (403)
                      +.+. +-...+..+.|.++ +..++..+..     +.|..++. +|+.++.+.  ..+....|++..++.+++.   ++.
T Consensus        15 ~~l~-g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~   87 (248)
T PF06977_consen   15 KPLP-GILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR   87 (248)
T ss_dssp             EE-T-T--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE
T ss_pred             eECC-CccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc
Confidence            4454 44556999999985 5566666666     88988885 688888887  3467889999999998883   678


Q ss_pred             EEEEEcCCc------eeeeEee-----ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--C--ceeEE------
Q 015650          196 IFVYNFADL------KLLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K--RTKFI------  254 (403)
Q Consensus       196 i~i~d~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~--~~~~~------  254 (403)
                      +.++++...      .....+.     .....+..+++.+..+.++++-   +..-..+|.++.  .  .....      
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccc
Confidence            988888431      1112222     1233467899999999888774   455556666554  1  11111      


Q ss_pred             --eecCCceEEEEEcCCCCEE-EEEeCCCcEEEEEEcCCCcEEEEEecCC--Cc-----ccEEEEEeCCCCCEEEEEeCC
Q 015650          255 --MAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGA--DR-----AEIYSLAFSSNAQWLAVSSDK  324 (403)
Q Consensus       255 --~~~~~~i~~~~~sp~g~~l-~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~-----~~v~~l~~s~d~~~l~s~~~d  324 (403)
                        ......+.++.++|....| +.+..... |.++| .+|+.+..+....  |.     ...-.|+|.++|.+.++ ++-
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEp  241 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEP  241 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETT
T ss_pred             cccceeccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCC
Confidence              1133457899999965544 55555555 88999 6788776655321  11     24678999999865554 566


Q ss_pred             CcEEEE
Q 015650          325 GTVHVF  330 (403)
Q Consensus       325 g~v~iw  330 (403)
                      +..++|
T Consensus       242 Nlfy~f  247 (248)
T PF06977_consen  242 NLFYRF  247 (248)
T ss_dssp             TEEEEE
T ss_pred             ceEEEe
Confidence            666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.98  E-value=0.015  Score=54.99  Aligned_cols=228  Identities=12%  Similarity=0.170  Sum_probs=122.1

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEEecccC---cceeEE--EEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeE
Q 015650           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERG---GGIGVV--EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (403)
Q Consensus        96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~  170 (403)
                      ++++++...++.|.-.|..+++..........   ....+.  .+....++..++ +..+     +.|+-+|.++|+.+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v-~~~~-----g~v~AlD~~TG~~~W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFF-GTFD-----GRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEE-ecCC-----CeEEEEECCCCCEee
Confidence            44444444455588888887777655444311   000011  111222133333 3344     899999999999988


Q ss_pred             EEecCCc------ee-EEEEecCceEEE-e----------cCeEEEEEcCCceeeeEeeccCCC----------------
Q 015650          171 ELSFRSE------VR-SVKLRRDRIIVV-L----------EQKIFVYNFADLKLLHQIETIANP----------------  216 (403)
Q Consensus       171 ~~~~~~~------i~-~~~~~~~~~~~~-~----------d~~i~i~d~~~~~~~~~~~~~~~~----------------  216 (403)
                      .+.....      +. ...+. ++.+++ .          ++.++.+|..+|+.+..++.....                
T Consensus       135 ~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~  213 (488)
T cd00216         135 KFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP  213 (488)
T ss_pred             eecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence            8773322      11 22222 244444 2          468999999999988877542110                


Q ss_pred             ----c-eeEEEeeCCCeEEEEeeCC---------------ccCeEEEEEccCCceeEEee---cCC----ceEEEEEc--
Q 015650          217 ----K-GLCAVSQGVGSLVLVCPGL---------------QKGQVRVEHYASKRTKFIMA---HDS----RIACFALT--  267 (403)
Q Consensus       217 ----~-~~~~~~~~~~~~~~~~~g~---------------~d~~i~v~d~~~~~~~~~~~---~~~----~i~~~~~s--  267 (403)
                          + ...++.+.++.+++.+...               .++.|.-+|..+++..-...   |..    ......+.  
T Consensus       214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~  293 (488)
T cd00216         214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI  293 (488)
T ss_pred             CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence                0 1123333344444443110               12368888888877643321   211    00001111  


Q ss_pred             --CCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE------------------eCC
Q 015650          268 --QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS------------------SDK  324 (403)
Q Consensus       268 --p~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~------------------~~d  324 (403)
                        -+|.   +++.++.+|. +...|.++|+.+-.....     ...++.+|  ..+..+                  ..+
T Consensus       294 ~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~  365 (488)
T cd00216         294 KPKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGK  365 (488)
T ss_pred             cccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccCcccccCCCCCCCc
Confidence              1343   5778888999 999999999988766521     11233444  222222                  235


Q ss_pred             CcEEEEEeecCCCC
Q 015650          325 GTVHVFNLKVNSGS  338 (403)
Q Consensus       325 g~v~iwd~~~~~~~  338 (403)
                      |.|.-.|+.+++..
T Consensus       366 G~l~AlD~~tG~~~  379 (488)
T cd00216         366 GGLAALDPKTGKVV  379 (488)
T ss_pred             eEEEEEeCCCCcEe
Confidence            67888888887753

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.95  E-value=0.011  Score=51.49  Aligned_cols=198  Identities=11%  Similarity=0.104  Sum_probs=113.3

Q ss_pred             EEEEcCCCCEEEEEc---CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC-C
Q 015650           90 HISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-Q  165 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~-~  165 (403)
                      .++++.||+++.+..   ...|.|-|+...+-..+....    ....-.-..+++...++++       |.+.-..+. .
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----GC~~iyP~~~~~F~~lC~D-------Gsl~~v~Ld~~  167 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----GCWLIYPSGNRGFSMLCGD-------GSLLTVTLDAD  167 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----SEEEEEEEETTEEEEEETT-------SCEEEEEETST
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----CEEEEEecCCCceEEEecC-------CceEEEEECCC
Confidence            457889999988775   344999999887766333332    2222222334554444443       888888876 5


Q ss_pred             CceeEEEe---c--CCce-eEEEEec-CceEEE--ecCeEEEEEcCCcee--eeEeec----------cCCCceeEEEee
Q 015650          166 SRCIGELS---F--RSEV-RSVKLRR-DRIIVV--LEQKIFVYNFADLKL--LHQIET----------IANPKGLCAVSQ  224 (403)
Q Consensus       166 ~~~~~~~~---~--~~~i-~~~~~~~-~~~~~~--~d~~i~i~d~~~~~~--~~~~~~----------~~~~~~~~~~~~  224 (403)
                      |+......   +  ..++ ..-++.. ++.+++  .+|.|+-.|+.....  ...+..          ..+....+++++
T Consensus       168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~  247 (342)
T PF06433_consen  168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA  247 (342)
T ss_dssp             SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred             CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence            55543332   1  2222 2334443 345554  689999988865432  122211          123345688988


Q ss_pred             CCCeEEEEeeCC-----ccC--eEEEEEccCCceeEEeecCCceEEEEEcCCCC-EEEEE-eCCCcEEEEEEcCCCcEEE
Q 015650          225 GVGSLVLVCPGL-----QKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQ-LLATS-STKGTLVRIFNTLDGTLLQ  295 (403)
Q Consensus       225 ~~~~~~~~~~g~-----~d~--~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~s~-~~dg~~i~iwd~~~~~~~~  295 (403)
                      ..+.+|+..-..     +++  .|.++|+.+++...-..-..++.+|..+.+.+ +|++. ..++. |.+||..+|+.++
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~~  326 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLVR  326 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EEE
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEEe
Confidence            888888765211     222  46666777755433222345678999998776 66554 45788 9999999999999


Q ss_pred             EEec
Q 015650          296 EVRR  299 (403)
Q Consensus       296 ~~~~  299 (403)
                      ++..
T Consensus       327 ~~~~  330 (342)
T PF06433_consen  327 SIEQ  330 (342)
T ss_dssp             EE--
T ss_pred             ehhc
Confidence            9885

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.87  E-value=0.023  Score=54.07  Aligned_cols=235  Identities=9%  Similarity=0.048  Sum_probs=126.8

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeEEEEecccCcc--eeEEE-EeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe
Q 015650           97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG--IGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (403)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~  173 (403)
                      +++++...++.+.-.|..+++.+....+. ...  ..+.+ .... ++..++.......-..|.|.-+|.++|+.+-.+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            34444334666888888888877655442 111  11111 1112 3344443221000011889999999998887665


Q ss_pred             --cCC------------------------------ce-eEEEEecCceEEE--e-------------cC----eEEEEEc
Q 015650          174 --FRS------------------------------EV-RSVKLRRDRIIVV--L-------------EQ----KIFVYNF  201 (403)
Q Consensus       174 --~~~------------------------------~i-~~~~~~~~~~~~~--~-------------d~----~i~i~d~  201 (403)
                        ...                              .+ ..+++.++..++.  .             |+    .|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence              111                              01 1235555433333  1             12    6888999


Q ss_pred             CCceeeeEeeccCCCc---------eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee---------EE----eecC-
Q 015650          202 ADLKLLHQIETIANPK---------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---------FI----MAHD-  258 (403)
Q Consensus       202 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~---------~~----~~~~-  258 (403)
                      ++|+....++...+.+         ..+.+..+++..-++..+.++|.+.+.|.++++..         ..    .... 
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g  358 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG  358 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence            9999988776533322         12233345553223333568999999999886542         11    0000 


Q ss_pred             Cc-----------------e-----------EEEEEcCCCCEEEEEeCC-------------------------------
Q 015650          259 SR-----------------I-----------ACFALTQDGQLLATSSTK-------------------------------  279 (403)
Q Consensus       259 ~~-----------------i-----------~~~~~sp~g~~l~s~~~d-------------------------------  279 (403)
                      .+                 +           ..++++|+..+++....+                               
T Consensus       359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~  438 (527)
T TIGR03075       359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD  438 (527)
T ss_pred             CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence            00                 0           125667766665543333                               


Q ss_pred             --CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          280 --GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       280 --g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                        |. |.-+|+.+++.+-......  ....+. ..-.+.+++.+..+|.++.+|.++++.
T Consensus       439 ~~g~-l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~  494 (527)
T TIGR03075       439 HMGS-LIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEE  494 (527)
T ss_pred             Ccee-EEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCE
Confidence              34 6667877887766554321  111111 112455777788899999999999994

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.79  E-value=0.02  Score=51.99  Aligned_cols=231  Identities=15%  Similarity=0.152  Sum_probs=113.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~  165 (403)
                      .|+.+.|.++..-|++|...| |.||.+...+..-.+..     ..-..+.+.+    +-...       +.-.+-|+..
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~-----~~~~~~~~~~----~~~~~-------~~~~l~di~~   66 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQ-----PPDLDYNFRR----FSLNN-------SPGKLTDISD   66 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S------GGG-------SS-SEEE-GG
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCC-----CcccCccccc----ccccC-------CCcceEEehh
Confidence            589999999988888888656 88888754332210000     0111111100    00000       1111222211


Q ss_pred             --------C-ceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeecc--------CCCceeEEEe--
Q 015650          166 --------S-RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI--------ANPKGLCAVS--  223 (403)
Q Consensus       166 --------~-~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~~~~--  223 (403)
                              | .+...+. ..++|++++.+.-|...+  .+|.+.|.|++....+..-...        ...+..+.|.  
T Consensus        67 r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm  146 (395)
T PF08596_consen   67 RAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM  146 (395)
T ss_dssp             G--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE
T ss_pred             hCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE
Confidence                    1 2233333 578999999987777766  4899999999887766553221        1233445554  


Q ss_pred             -eCCCe---EEEEeeCCccCeEEEEEccC---Ccee-----EEeecCCceEEEE-EcCC---------------------
Q 015650          224 -QGVGS---LVLVCPGLQKGQVRVEHYAS---KRTK-----FIMAHDSRIACFA-LTQD---------------------  269 (403)
Q Consensus       224 -~~~~~---~~~~~~g~~d~~i~v~d~~~---~~~~-----~~~~~~~~i~~~~-~sp~---------------------  269 (403)
                       ..++.   ..+. .|...|.+.+|.+.-   +...     ....+.+.|..|. |+.+                     
T Consensus       147 ~~~~D~ySSi~L~-vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i  225 (395)
T PF08596_consen  147 TLGGDGYSSICLL-VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI  225 (395)
T ss_dssp             E-TTSSSEEEEEE-EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred             ecCCCcccceEEE-EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence             23332   3333 366789999998652   1111     1124556666554 4222                     


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEe-----CCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF-----SSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       270 g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~-----s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      ..++++++. .. ++|+...+.+...+...  .......+.+     ...+..|++-..+|.|++|.+..-+.+
T Consensus       226 ~g~vVvvSe-~~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  226 PGYVVVVSE-SD-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             -EEEEEE-S-SE-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             CcEEEEEcc-cc-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence            124555554 44 99999988877665542  2223334444     235667888889999999999887753

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0024  Score=60.41  Aligned_cols=152  Identities=15%  Similarity=0.161  Sum_probs=99.4

Q ss_pred             ccCCCCCCeEEEEEcCC-------------CCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-----
Q 015650           80 TSSSPPPTLLHISFNQD-------------HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-----  140 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d-------------~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----  140 (403)
                      .+..|.+.|.-..+.-+             |.++++|+++| |.|-.+.+.+......+.    ..+.+++++|+     
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~----rpiksial~Pd~~~~~  128 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK----RPIKSIALHPDFSRQQ  128 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC----CcceeEEeccchhhhh
Confidence            45667766666655444             99999999776 999988877776555554    56777777776     


Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCC---CceeEEEe-cCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCC
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP  216 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~---~~~~~~~~-~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  216 (403)
                      ...+++|+..     | +.++.-.-   ...+ .+. ..++|.++.|..+-...+.|--|++||+.+++.+..++.....
T Consensus       129 sk~fv~GG~a-----g-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~  201 (846)
T KOG2066|consen  129 SKQFVSGGMA-----G-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQS  201 (846)
T ss_pred             hhheeecCcc-----e-EEEehhhhhcCccce-eeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCC
Confidence            4567788776     7 77765221   1222 233 6889999999765444446888999999988877766543332


Q ss_pred             ce------eEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          217 KG------LCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       217 ~~------~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      +.      .+.|.++  ..++.  | ...+|+|..++
T Consensus       202 ~R~e~fpphl~W~~~--~~LVI--G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  202 VRPELFPPHLHWQDE--DRLVI--G-WGDSVKICSIK  233 (846)
T ss_pred             CCcccCCCceEecCC--CeEEE--e-cCCeEEEEEEe
Confidence            22      2344433  33443  2 44578888777

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.79  E-value=0.02  Score=49.67  Aligned_cols=216  Identities=15%  Similarity=0.198  Sum_probs=121.1

Q ss_pred             CCCCEEEEEcCCcEEEEEcC-CCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeE---
Q 015650           95 QDHGCFAAGTDHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG---  170 (403)
Q Consensus        95 ~d~~~l~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~---  170 (403)
                      ..++.|+.|+++|+.+++.. .....  +..   +...|..+...++...++.-.+      +.++++++..-....   
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~--~i~---~~~~I~ql~vl~~~~~llvLsd------~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPT--RIL---KLSSITQLSVLPELNLLLVLSD------GQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccce--eEe---ecceEEEEEEecccCEEEEEcC------CccEEEEchhhccccccc
Confidence            45788999999999999982 22222  222   3334888887775443333322      789999986654333   


Q ss_pred             ------------EEecCCceeEEE---EecCceEEE--ecCeEEEEEcCCc-----eeeeEeeccCCCceeEEEeeCCCe
Q 015650          171 ------------ELSFRSEVRSVK---LRRDRIIVV--LEQKIFVYNFADL-----KLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       171 ------------~~~~~~~i~~~~---~~~~~~~~~--~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                                  .+.....+...+   -......++  ...+|.+|.....     +..+++... ..+..++|.  ++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~  150 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNK  150 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCE
Confidence                        122233344444   112233333  5778888887653     345555443 455666666  444


Q ss_pred             EEEEeeCCccCeEEEEEccCCceeEEeec-------------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH-------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~-------------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~  295 (403)
                      +.+++    .....+.|+.++....+...             ..++..+.. +++.+|++-  +.. -.+.| ..|+..+
T Consensus       151 i~v~~----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~-g~fv~-~~G~~~r  221 (275)
T PF00780_consen  151 ICVGT----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNI-GVFVN-KNGEPSR  221 (275)
T ss_pred             EEEEe----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cce-EEEEc-CCCCcCc
Confidence            44432    45688889887665544321             123333444 345666543  332 23334 3555443


Q ss_pred             --EEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          296 --EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       296 --~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                        .+.-   .....++++  ...+|+..+. +.|.||++.+++...
T Consensus       222 ~~~i~W---~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  222 KSTIQW---SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ  261 (275)
T ss_pred             ccEEEc---CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence              3332   235566666  3457877765 459999999998533

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.78  E-value=0.026  Score=50.62  Aligned_cols=224  Identities=13%  Similarity=0.077  Sum_probs=100.7

Q ss_pred             CCCEEEEEc--CCcEEEEEcC--CCeeEEEEeccc---Ccc---eeEEEEeeeCCeEEEeeCCCC-CCCCCceEEEEECC
Q 015650           96 DHGCFAAGT--DHGFRIYNCD--PFREIFRRDFER---GGG---IGVVEMLFRCNILALVGGGPD-PQYPLNKVMIWDDH  164 (403)
Q Consensus        96 d~~~l~~~~--~~~i~iw~~~--~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~~~s~~~d-~~~~~~~i~iwd~~  164 (403)
                      +.++|+..+  .+.|.|+|+.  ..+..+.+.++.   ...   ..-....--+++..++++-.+ .....|-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            457787777  4449999986  334445455541   001   111222223456444432111 11233678888877


Q ss_pred             CCceeEEEec----CCceeEEEEecCceEEEe-----------------------cCeEEEEEcCCceeeeEeeccCCCc
Q 015650          165 QSRCIGELSF----RSEVRSVKLRRDRIIVVL-----------------------EQKIFVYNFADLKLLHQIETIANPK  217 (403)
Q Consensus       165 ~~~~~~~~~~----~~~i~~~~~~~~~~~~~~-----------------------d~~i~i~d~~~~~~~~~~~~~~~~~  217 (403)
                      +.+.....+.    ..--..+-+.|....+++                       ..++.+||+.+.+.++++.......
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            7777766652    222345666776555541                       3589999999999999987654332


Q ss_pred             --eeEEEeeCCC--eEEEEeeCCccCeEEEEEc-cCC-----ceeEEeec-----------------CCceEEEEEcCCC
Q 015650          218 --GLCAVSQGVG--SLVLVCPGLQKGQVRVEHY-ASK-----RTKFIMAH-----------------DSRIACFALTQDG  270 (403)
Q Consensus       218 --~~~~~~~~~~--~~~~~~~g~~d~~i~v~d~-~~~-----~~~~~~~~-----------------~~~i~~~~~sp~g  270 (403)
                        -.+.|..+++  .-++.++  -...|..|-- +.+     ++..+...                 ..-|+.|.+|.|.
T Consensus       246 ~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             ceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence              2355554443  3344443  2344444432 332     22222111                 2447899999999


Q ss_pred             CEEEEEeC-CCcEEEEEEcCCCc---EEEEEecCC--------------CcccEEEEEeCCCCCEEEEEe
Q 015650          271 QLLATSST-KGTLVRIFNTLDGT---LLQEVRRGA--------------DRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       271 ~~l~s~~~-dg~~i~iwd~~~~~---~~~~~~~~~--------------~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      ++|+.++. .|. |+.||+.+-.   +...+..+.              -.+...-|..|-||+.|....
T Consensus       324 rfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  324 RFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             CEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            99987776 666 9999998643   333332110              112346788999999887653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.76  E-value=0.018  Score=48.24  Aligned_cols=238  Identities=17%  Similarity=0.140  Sum_probs=133.5

Q ss_pred             CeEEEEEcCCCC-EEEEEcC-Cc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           87 TLLHISFNQDHG-CFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        87 ~i~~i~~s~d~~-~l~~~~~-~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      .-..|+|+|.-. -++.+-. ++ ..++|....+......-. ...--.-.=.|++++.+|+....|..-..|.|-|||.
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-EGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-cCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            345677888653 4555553 33 788888766554322221 1111222335899999999888876666699999998


Q ss_pred             CCC-ceeEEEe-cCCceeEEEEecCceEEE-ecCeEEE--------------------EEcCCceeeeEee----ccCCC
Q 015650          164 HQS-RCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFV--------------------YNFADLKLLHQIE----TIANP  216 (403)
Q Consensus       164 ~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i--------------------~d~~~~~~~~~~~----~~~~~  216 (403)
                      ..+ +.+.++. |.-....+.+.+||+.++ .+|-|..                    .|..+|+++.+..    .+...
T Consensus       148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS  227 (366)
T COG3490         148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS  227 (366)
T ss_pred             ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence            754 5566666 777788999999999888 5554443                    3434444433221    11222


Q ss_pred             ceeEEEeeCCCeEEEEee--CC-ccCeEEEEE-ccCCceeEEe-------ecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          217 KGLCAVSQGVGSLVLVCP--GL-QKGQVRVEH-YASKRTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~--g~-~d~~i~v~d-~~~~~~~~~~-------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      +..+....++. +++.+.  |. +|---.+=- .+++.+..+.       .....|-+|+.+.+..+++..+-.|+...+
T Consensus       228 iRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi  306 (366)
T COG3490         228 IRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI  306 (366)
T ss_pred             eeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence            33344444432 112210  00 000000000 0111222221       123467788888767777766777765889


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                      ||..+|..+......    .+..++  +...-+++.+.+|.+.++.-
T Consensus       307 ~da~tG~vv~~a~l~----daaGva--~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         307 WDAATGAVVSEAALP----DAAGVA--AAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             EEcCCCcEEeccccc----ccccce--eccCceEEecCCceEEeccc
Confidence            999999987654421    222333  34445666777898888843

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.00014  Score=67.50  Aligned_cols=114  Identities=16%  Similarity=0.209  Sum_probs=82.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      ..+.--+++..+++|+.|+.-|. |++|+-..++.. .++.....+.+..+..+++..++|.|+..|.|.++-++...+.
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGS-VYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             ceEEEEEeecCCceEEEecccce-EEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            34444566778999999999999 999996555543 3433223356777888999999999999999999999885431


Q ss_pred             CCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ...                        ++...     -+-|...|++++|++|+..|++|..-|.
T Consensus       112 ~~~------------------------~~t~~-----d~~~~~rVTal~Ws~~~~k~ysGD~~Gk  147 (726)
T KOG3621|consen  112 DLD------------------------YVTPC-----DKSHKCRVTALEWSKNGMKLYSGDSQGK  147 (726)
T ss_pred             cce------------------------eeccc-----cccCCceEEEEEecccccEEeecCCCce
Confidence            111                        11110     1226678999999999999999998874

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.71  E-value=0.0035  Score=60.01  Aligned_cols=138  Identities=12%  Similarity=0.074  Sum_probs=76.7

Q ss_pred             EEEecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee---CCcc--CeEEEEEccCCceeEEeecCCceEE
Q 015650          189 IVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP---GLQK--GQVRVEHYASKRTKFIMAHDSRIAC  263 (403)
Q Consensus       189 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~d--~~i~v~d~~~~~~~~~~~~~~~i~~  263 (403)
                      +.+.+|.+.-.+-..-..+....+....+...+++++++...++..   ...|  ..|.+++..... ..+.. ....+.
T Consensus       324 ~~v~~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~  401 (591)
T PRK13616        324 HALVDGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTR  401 (591)
T ss_pred             eEEECCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCC
Confidence            3335666655442222222222122235567889999987655542   1123  345555653333 33322 223788


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEE-----------EcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          264 FALTQDGQLLATSSTKGTLVRIF-----------NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       264 ~~~sp~g~~l~s~~~dg~~i~iw-----------d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                      -.|+|||+.|++.......+++.           ++..++...  .   ....|..+.|||||..|+... +|.|++=-+
T Consensus       402 PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~---~~g~Issl~wSpDG~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        402 PSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--R---VPGPISELQLSRDGVRAAMII-GGKVYLAVV  475 (591)
T ss_pred             ceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--c---cCCCcCeEEECCCCCEEEEEE-CCEEEEEEE
Confidence            89999999888775432213333           333332222  1   235799999999999988766 577777444


Q ss_pred             ec
Q 015650          333 KV  334 (403)
Q Consensus       333 ~~  334 (403)
                      ..
T Consensus       476 vr  477 (591)
T PRK13616        476 EQ  477 (591)
T ss_pred             Ee
Confidence            33

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.69  E-value=1.2e-05  Score=73.35  Aligned_cols=194  Identities=13%  Similarity=0.221  Sum_probs=117.2

Q ss_pred             EEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee-EEEe--cCCceeEEEEec-CceEEE-------ecCeEEEEE
Q 015650          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI-GELS--FRSEVRSVKLRR-DRIIVV-------LEQKIFVYN  200 (403)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~-~~~~--~~~~i~~~~~~~-~~~~~~-------~d~~i~i~d  200 (403)
                      +.+..+..+...++.|..+     |.|.+-.++...-. .++.  +....++++|++ |...++       .|..+.|||
T Consensus        61 cva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   61 CVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             eehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3333344454566666666     88888877655332 3333  677889999998 444444       367899999


Q ss_pred             cCCc--eee--eEeec-cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcC-CCCEEE
Q 015650          201 FADL--KLL--HQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLA  274 (403)
Q Consensus       201 ~~~~--~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~  274 (403)
                      +.++  .+.  ..|.+ .......+++-.+  ..++. +|.....+.++|++........-....+..+..+| .+.|++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccccCCCccccccccccccCccccccccC--cchhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence            9875  221  12222 2233345666633  22333 46677899999998644433333344567778888 778887


Q ss_pred             EEeCCCcEEEEEEc-CCCc-EEEEEecCC--CcccEEEEEeCCCCC-EEEEEe-CCCcEEEEEeecC
Q 015650          275 TSSTKGTLVRIFNT-LDGT-LLQEVRRGA--DRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       275 s~~~dg~~i~iwd~-~~~~-~~~~~~~~~--~~~~v~~l~~s~d~~-~l~s~~-~dg~v~iwd~~~~  335 (403)
                      +-. ||. |.+||. .+-+ ++..+....  ....+..++|.|... .+++.. ..++|+++++..-
T Consensus       213 s~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  213 SNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             ccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            655 888 999993 3222 222222100  112489999999654 445554 6678999998654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.63  E-value=0.0067  Score=43.30  Aligned_cols=65  Identities=23%  Similarity=0.390  Sum_probs=49.3

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          261 IACFALTQ---DG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       261 i~~~~~sp---~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                      |++|++..   || +.|++|+.|.. |++|+  ..+.+.++.   ....|+++.-... ..++.+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~---e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEIT---ETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEe---cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            55666554   33 57889999999 99997  457777777   3468888887766 66888889999988865

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.00023  Score=61.63  Aligned_cols=93  Identities=16%  Similarity=0.250  Sum_probs=74.1

Q ss_pred             EEEEEccC-CceeEEeecCCceEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-E
Q 015650          241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-W  317 (403)
Q Consensus       241 i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~  317 (403)
                      +++.+..+ +....+..+...|..++|+|..+ +|..++.+.. |+|.|+++...+..+..  + ..+++++|.-|.. +
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a--~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA--Y-NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec--c-CCceeeeeccCCcce
Confidence            44444333 33445667888999999999877 6778888888 99999999999888885  3 7899999998776 5


Q ss_pred             EEEEeCCCcEEEEEeecCCC
Q 015650          318 LAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       318 l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |..|-..|.|.|||++..+.
T Consensus       251 IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             eEEeccCceEEEEEccCCCc
Confidence            66677899999999998775

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.60  E-value=0.024  Score=48.37  Aligned_cols=119  Identities=20%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE-cCCCcEE
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN-TLDGTLL  294 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd-~~~~~~~  294 (403)
                      .+...+++++++.+.++..+.....++++.........+.  ...+....|++++...+....+.. .+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCc-eEEEEecCCCcce
Confidence            5678899999987666552233445666655443333332  336788899999887776665665 66663 3333322


Q ss_pred             -EEEecCCCcccEEEEEeCCCCCEEEEEe---CCCcEEEEEeecCCC
Q 015650          295 -QEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSG  337 (403)
Q Consensus       295 -~~~~~~~~~~~v~~l~~s~d~~~l~s~~---~dg~v~iwd~~~~~~  337 (403)
                       ..+........|..+.+||||..+|...   .++.|++=-+.....
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~  148 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD  148 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC
Confidence             2222211112899999999999887665   467888888776553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>smart00320 WD40 WD40 repeats

Probab=97.58  E-value=0.00029  Score=39.67  Aligned_cols=38  Identities=32%  Similarity=0.639  Sum_probs=32.0

Q ss_pred             cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      +++..+..  |...|.++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44555554  667899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.002  Score=58.19  Aligned_cols=135  Identities=15%  Similarity=0.301  Sum_probs=93.5

Q ss_pred             CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe----eCCccCeEEEEEccCCce---eEEeec----CCceE
Q 015650          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----PGLQKGQVRVEHYASKRT---KFIMAH----DSRIA  262 (403)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~d~~i~v~d~~~~~~---~~~~~~----~~~i~  262 (403)
                      ..++-.|++.|+.+.+++.+.. |..+.+.|+.+.--+..    .|-.+..|.-||.+-.-.   ...+.|    .....
T Consensus       356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs  434 (644)
T KOG2395|consen  356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS  434 (644)
T ss_pred             CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence            4688899999999999887665 77777777654322211    144688899999886322   222333    23456


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       263 ~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      |.+-..+| +++.|+.+|. |++||- .+..-++.-.+ ...+|..|..+.||++|+..+ +..+.+.++.-
T Consensus       435 c~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~  501 (644)
T KOG2395|consen  435 CFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGKWILATC-KTYLLLIDTLI  501 (644)
T ss_pred             eeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence            66666566 7889999999 999996 55544444332 457999999999999987665 55777777643

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.53  E-value=0.059  Score=47.93  Aligned_cols=242  Identities=14%  Similarity=0.146  Sum_probs=118.1

Q ss_pred             EEEEcCCCCEEEEE-cCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC---CCC-------------
Q 015650           90 HISFNQDHGCFAAG-TDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQ-------------  152 (403)
Q Consensus        90 ~i~~s~d~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~-------------  152 (403)
                      ...++++.+.++.. ..+.|+-.|+++.+......+. ..-...-.+..+.++..++....   +-.             
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~  163 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP-DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE  163 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC-cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence            34567888887655 4556888888888776555554 22222223333334433332111   100             


Q ss_pred             -CCCceEEEEECCCCceeEEEecCCceeEEEEecCc-eEEEe---------cCeEEEEEcCCceeeeEeeccC--CCcee
Q 015650          153 -YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVL---------EQKIFVYNFADLKLLHQIETIA--NPKGL  219 (403)
Q Consensus       153 -~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~---------d~~i~i~d~~~~~~~~~~~~~~--~~~~~  219 (403)
                       -+...|.-.|+.+|+....+.....+..+.|+|.. .+++.         |..|.+.+.. +...+.+..+.  ..+..
T Consensus       164 a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gH  242 (386)
T PF14583_consen  164 ARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGH  242 (386)
T ss_dssp             C---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEE
T ss_pred             hCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCccccc
Confidence             02256777788998887777777888899999953 33331         3345444532 33333333222  22344


Q ss_pred             EEEeeCCCeEEEEe--eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC----------------c
Q 015650          220 CAVSQGVGSLVLVC--PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG----------------T  281 (403)
Q Consensus       220 ~~~~~~~~~~~~~~--~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg----------------~  281 (403)
                      --|.++|..++...  .+..+..|.-+|+.+.....+..- .....+..++||++++-=+.|.                -
T Consensus       243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~  321 (386)
T PF14583_consen  243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW  321 (386)
T ss_dssp             EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred             ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence            56788888776643  333456677788887655444322 2455667788999887533331                3


Q ss_pred             EEEEEEcCCCcEEEEEecCC--------C-cccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650          282 LVRIFNTLDGTLLQEVRRGA--------D-RAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~--------~-~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                       |++++++.++...... +.        + ...=....|+|||++++-.| ..|...||-++-++
T Consensus       322 -i~~~~~~~~~~~~l~~-h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~~  384 (386)
T PF14583_consen  322 -IYLFDVEAGRFRKLAR-HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD  384 (386)
T ss_dssp             -EEEEETTTTEEEEEEE--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred             -EEEeccccCceeeeee-ccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence             6678887766532222 10        0 00124578999999876554 78888888766543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.50  E-value=0.082  Score=48.97  Aligned_cols=200  Identities=10%  Similarity=0.106  Sum_probs=106.6

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e-------------cCeE
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L-------------EQKI  196 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-------------d~~i  196 (403)
                      .+..+.+++++..++-+-+...-....|+++|+.+|+.+...-.......+.|.+|+..++ .             ...|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3346677887765542211000011579999999997765432222223499999976655 1             2248


Q ss_pred             EEEEcCCcee--eeEeeccCCC--ceeEEEeeCCCeEEEEeeCCcc-CeEEEEEccCC-----ceeEEeecCCceEEEEE
Q 015650          197 FVYNFADLKL--LHQIETIANP--KGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASK-----RTKFIMAHDSRIACFAL  266 (403)
Q Consensus       197 ~i~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-~~i~v~d~~~~-----~~~~~~~~~~~i~~~~~  266 (403)
                      +.|.+.+...  ...+......  ...+..+.+++.+++.+....+ ..+.+.++...     ....+..+...+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            8888877533  2344443333  3456778888877766544455 67888888764     45555555544444333


Q ss_pred             cCCCCEEEEEeC---CCcEEEEEEcCCCc---EEEEEecCCCcccEEEEEeCCCCCEEEE-EeCCC--cEEEEEee
Q 015650          267 TQDGQLLATSST---KGTLVRIFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQWLAV-SSDKG--TVHVFNLK  333 (403)
Q Consensus       267 sp~g~~l~s~~~---dg~~i~iwd~~~~~---~~~~~~~~~~~~~v~~l~~s~d~~~l~s-~~~dg--~v~iwd~~  333 (403)
                      +..+.+++....   ++. |.-.++.+..   ....+..+.....+..+..  .+.+|+. .-.++  .|+++++.
T Consensus       285 ~~~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EETTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             ccCCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            334444443322   345 6666777654   2223333212224555555  4445544 44454  47777777

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.48  E-value=0.13  Score=50.63  Aligned_cols=229  Identities=13%  Similarity=0.198  Sum_probs=137.7

Q ss_pred             CEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEee-CCCC--------CCCCCceEEEEECCCCce
Q 015650           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG-GGPD--------PQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-~~~d--------~~~~~~~i~iwd~~~~~~  168 (403)
                      ..|+.+..+.+++.-++.-+++..+++.  -......+++.+....+.. ..+-        +.+.-..++++|-++.+.
T Consensus       685 d~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v  762 (1096)
T KOG1897|consen  685 DSLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV  762 (1096)
T ss_pred             ceEEEecCCceEEEEecchhhcceeeec--CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence            3466666666888887777666666654  4455566667653333222 2111        011124577777777666


Q ss_pred             eEEEec--CC---ceeEEEEecC-ceEEE--e-----------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          169 IGELSF--RS---EVRSVKLRRD-RIIVV--L-----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       169 ~~~~~~--~~---~i~~~~~~~~-~~~~~--~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      +...+.  .+   .|.++.|..| +.+++  +           .|.|.+|....++.++.+..+.-.-...++..-. +.
T Consensus       763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn-gk  841 (1096)
T KOG1897|consen  763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN-GK  841 (1096)
T ss_pred             EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC-Ce
Confidence            655542  22   3445558776 44444  1           5788888877644444433222222233333322 23


Q ss_pred             EEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC--CCcEEEEEecCCCcccE
Q 015650          230 VLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGTLLQEVRRGADRAEI  306 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~--~~~~~~~~~~~~~~~~v  306 (403)
                      ++|.   -+..|++|++.++ +++.-..+..++..+.+.-.|..++.|.--+. +.+.-.+  .|......+ .-+..++
T Consensus       842 llA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~evAr-D~~p~Wm  916 (1096)
T KOG1897|consen  842 LLAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFEEVAR-DYNPNWM  916 (1096)
T ss_pred             EEEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceEEeeh-hhCccce
Confidence            5554   4579999999987 44555567888999999889999999988777 6665443  333443333 3366788


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      +++.+-.+ ..++.+..+|.+++-..++.
T Consensus       917 taveil~~-d~ylgae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  917 TAVEILDD-DTYLGAENSGNLFTVRKDSD  944 (1096)
T ss_pred             eeEEEecC-ceEEeecccccEEEEEecCC
Confidence            88888644 45556667888888877643

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00066  Score=62.36  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceE-EEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEE
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~-~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (403)
                      .+..+.|+|.-+  ++|. +..+|.|.+..+.-.++..+.-|+..++ +++|.|||+.||.|-.||+ |++-|++++..+
T Consensus        22 ~i~~~ewnP~~d--LiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNPKMD--LIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcCccc--hhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence            345667777665  4444 3478999999998888888887777777 9999999999999999999 999999999888


Q ss_pred             EEEecCCCcccEEEEEeCC
Q 015650          295 QEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       295 ~~~~~~~~~~~v~~l~~s~  313 (403)
                      ..+... -...|.++-|++
T Consensus        98 ~~~~~s-~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFS-VETDISKGIWDR  115 (665)
T ss_pred             eccccc-cccchheeeccc
Confidence            774321 346788888863

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00072  Score=62.12  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE-EEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY-SLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ...+.-+.|+|.-.+||.+..+|. |-+..+. .+.+.++..  +...++ +++|.|||+.||+|-.||+|++-|+.++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            345778899999999999999999 9999876 777777774  334555 99999999999999999999999999998


Q ss_pred             CCCC
Q 015650          337 GSAR  340 (403)
Q Consensus       337 ~~~~  340 (403)
                      .+..
T Consensus        96 ~l~~   99 (665)
T KOG4640|consen   96 RLVS   99 (665)
T ss_pred             ceec
Confidence            7655

>smart00320 WD40 WD40 repeats

Probab=97.39  E-value=0.00052  Score=38.54  Aligned_cols=35  Identities=29%  Similarity=0.629  Sum_probs=31.1

Q ss_pred             eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650          252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd  287 (403)
                      ..+..|...|.++.|.+++.++++++.|+. +++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            445678889999999999999999999999 99996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.0011  Score=64.61  Aligned_cols=99  Identities=18%  Similarity=0.275  Sum_probs=71.8

Q ss_pred             CCccCeEEEEEccCCce--eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc-ccEEEEEe
Q 015650          235 GLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLAF  311 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~  311 (403)
                      |+..|.+...|+++...  ..-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..|.-+.+
T Consensus       105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~  183 (1206)
T KOG2079|consen  105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTGVIFVGR  183 (1206)
T ss_pred             EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccceEEEEEE
Confidence            44668888888776422  222234578999999999999999999999 999999999998888764332 23444555


Q ss_pred             CCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          312 SSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       312 s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ..++..++++...|.  +|.+.-.+
T Consensus       184 t~~nS~llt~D~~Gs--f~~lv~nk  206 (1206)
T KOG2079|consen  184 TSQNSKLLTSDTGGS--FWKLVFNK  206 (1206)
T ss_pred             eCCCcEEEEccCCCc--eEEEEech
Confidence            566777888877776  67765444

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.32  E-value=0.023  Score=40.65  Aligned_cols=92  Identities=14%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             EEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCcee
Q 015650          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGL  219 (403)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~  219 (403)
                      ..|+.++.|     ..|++|+  ..+.+.++.-.+.|..+.-...+++.+  .+|+|-+|+-  .+.+..++.....+..
T Consensus        16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~   86 (111)
T PF14783_consen   16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM   86 (111)
T ss_pred             ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence            456667777     8999997  457888888888899998888877766  5999999984  3445555554444444


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEE
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVR  242 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~  242 (403)
                      ..+..++++..=...|-.+|.|-
T Consensus        87 ~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   87 AFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEcCCCCCceEEEEEecCCeEE
Confidence            44444443322112244666654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.31  E-value=0.073  Score=44.06  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=23.4

Q ss_pred             EEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEec
Q 015650           92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF  124 (403)
Q Consensus        92 ~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~  124 (403)
                      ...+++.++.+|+ |+.....|..+...++....
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            4567888888888 44488888887777755433

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.28  E-value=0.078  Score=43.87  Aligned_cols=140  Identities=11%  Similarity=0.033  Sum_probs=89.4

Q ss_pred             CCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650           97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (403)
Q Consensus        97 ~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~  175 (403)
                      ..+++.|+..+ +.--|..+++...+..+.  .......+. -.|  +++-+...     |.+++.+.++|..+..+.-.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgd--fVV~GCy~-----g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGD--FVVLGCYS-----GGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECC--EEEEEEcc-----CcEEEEEecchhheeeeeeh
Confidence            34566666444 677777777777665553  333333333 222  35555555     89999999999888888754


Q ss_pred             CceeE-EEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC
Q 015650          176 SEVRS-VKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (403)
Q Consensus       176 ~~i~~-~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~  249 (403)
                      +.|.. ....+++.++.   -|++.+..|.++..++...+........-++.+....+|++..+   |.+.--.....
T Consensus        93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~---G~vlavt~~~~  167 (354)
T KOG4649|consen   93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITA---GAVLAVTKNPY  167 (354)
T ss_pred             hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEecc---ceEEEEccCCC
Confidence            54443 33455666555   49999999999988888776555544556677766677777633   55544444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.28  E-value=0.00082  Score=63.88  Aligned_cols=116  Identities=14%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             eeEEEeeCCCeEEEEe-eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650          218 GLCAVSQGVGSLVLVC-PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~-~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (403)
                      ....|+|...-+.+++ +....|.|.||--.+. ...-....-.+++++|+|..-.|+.|-.-|. +.+|...+.+. .+
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGE-Pqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGE-PQRDVTYPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCC-CCcccccceehhhhccChHHHHHhhccccce-eEEEecCCcee-ee
Confidence            4566777666554444 2234577888743332 2211111223567999999988999888888 99998765544 33


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      +.. .|..+|..+.||++|..|+++..-|.|.+|.++....
T Consensus        96 v~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~  135 (1416)
T KOG3617|consen   96 VVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE  135 (1416)
T ss_pred             ecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence            333 3889999999999999999999999999999985443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.27  E-value=0.089  Score=44.29  Aligned_cols=182  Identities=8%  Similarity=0.053  Sum_probs=110.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEc-CCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           85 PPTLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~-~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      ..-...+.|..+|.++-+.+ .+.  |+.+|+++++......+.  ...---.+....+.++..+.-.      +...+|
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--~~~FgEGit~~~d~l~qLTWk~------~~~f~y  115 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--PRYFGEGITILGDKLYQLTWKE------GTGFVY  115 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--TT--EEEEEEETTEEEEEESSS------SEEEEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--ccccceeEEEECCEEEEEEecC------CeEEEE
Confidence            34456788877887776655 332  999999998877666665  4444455666678888888765      799999


Q ss_pred             ECCCCceeEEEecCCceeEEEEecCceEEEecC--eEEEEEcCCceeeeEeeccCC-----CceeEEEeeCCCeEEEEee
Q 015650          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       162 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  234 (403)
                      |..+.+.+.++.....=..++. .+..++.+||  .++.+|..+.+..+.+.....     .+.-+.+. ++ . +.|-.
T Consensus       116 d~~tl~~~~~~~y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~-IyANV  191 (264)
T PF05096_consen  116 DPNTLKKIGTFPYPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-K-IYANV  191 (264)
T ss_dssp             ETTTTEEEEEEE-SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-E-EEEEE
T ss_pred             ccccceEEEEEecCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-E-EEEEe
Confidence            9999999999987777777773 3344555776  688889888777766654322     12223333 22 2 22321


Q ss_pred             CCccCeEEEEEccCCceeEEe----------------ecCCceEEEEEcCCCCEEEEEeCC
Q 015650          235 GLQKGQVRVEHYASKRTKFIM----------------AHDSRIACFALTQDGQLLATSSTK  279 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~~~~~----------------~~~~~i~~~~~sp~g~~l~s~~~d  279 (403)
                       -....|...|..++.+....                ....-.+.|+++|....|...+..
T Consensus       192 -W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  192 -WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             -TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             -CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence             23456667777776654421                013457899999977766655543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.26  E-value=0.02  Score=54.96  Aligned_cols=152  Identities=19%  Similarity=0.194  Sum_probs=91.1

Q ss_pred             ceeEEEEecCceEEE--e-------cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC---------C
Q 015650          177 EVRSVKLRRDRIIVV--L-------EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG---------L  236 (403)
Q Consensus       177 ~i~~~~~~~~~~~~~--~-------d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~  236 (403)
                      .+...+++|||..++  .       |.  .|++++. .+.. ..+.. ......-.|+|+++.++++..+         .
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            567889999998877  2       22  5666664 2332 33322 2236778899998866665422         1


Q ss_pred             ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE---EEcCCCcE-E---EEEecCCCcccEEEE
Q 015650          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI---FNTLDGTL-L---QEVRRGADRAEIYSL  309 (403)
Q Consensus       237 ~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i---wd~~~~~~-~---~~~~~~~~~~~v~~l  309 (403)
                      ..+.+.+.+++.+....  ...+.|..+.|||||..|+... ++. |++   -....|+. +   ..+... ....+.++
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~-l~~~~~~l  502 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQYALTNPREVGPG-LGDTAVSL  502 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCceeecccEEeecc-cCCccccc
Confidence            22344444554443332  3356799999999999998766 466 777   44445541 1   112211 22346889


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .|..++.++ ++..++.-.+|.+.-...
T Consensus       503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~  529 (591)
T PRK13616        503 DWRTGDSLV-VGRSDPEHPVWYVNLDGS  529 (591)
T ss_pred             eEecCCEEE-EEecCCCCceEEEecCCc
Confidence            999998855 555556566777665543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.25  E-value=4.2e-05  Score=69.99  Aligned_cols=164  Identities=14%  Similarity=0.113  Sum_probs=104.3

Q ss_pred             cccCCCCCCeEEEEEcC-CCCEEEEEcCC-----cEEEEEcCCC--eeEEEEecccCcceeEEEEeeeCCeEEEeeCCCC
Q 015650           79 STSSSPPPTLLHISFNQ-DHGCFAAGTDH-----GFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~-d~~~l~~~~~~-----~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  150 (403)
                      ++..+|....++++|++ |...||+|-+.     .+.|||+.+.  ...-...+..+......+++|..+...+.+|...
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s  175 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS  175 (783)
T ss_pred             eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence            45566778889999987 56788888532     3999999765  1111122221122334467777777777777665


Q ss_pred             CCCCCceEEEEECCCCceeEEEecCCceeEEEEec-CceEEE--ecCeEEEEE-cCC-ceeeeEeeccC----CCceeEE
Q 015650          151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--LEQKIFVYN-FAD-LKLLHQIETIA----NPKGLCA  221 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~--~d~~i~i~d-~~~-~~~~~~~~~~~----~~~~~~~  221 (403)
                           ..+.++|++........-....+..+...| .+.+++  .|+.|-+|| .+. ..++..+....    ..+..++
T Consensus       176 -----r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a  250 (783)
T KOG1008|consen  176 -----RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA  250 (783)
T ss_pred             -----chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence                 789999987432222111344667788888 667777  699999999 333 22233332222    2367889


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccC
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~  248 (403)
                      |.|...+++.++ ....++|+++|+..
T Consensus       251 ycPtrtglla~l-~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  251 YCPTRTGLLAVL-SRDSITIRLYDICV  276 (783)
T ss_pred             eccCCcchhhhh-ccCcceEEEecccc
Confidence            999877765554 44778999999865

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.0078  Score=54.55  Aligned_cols=139  Identities=18%  Similarity=0.302  Sum_probs=90.7

Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc---------eEEE-ecCeEEEEEcCCc-e-eee
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---------IIVV-LEQKIFVYNFADL-K-LLH  208 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~-~d~~i~i~d~~~~-~-~~~  208 (403)
                      ...+.++...     ..++-.|++.|+.+.+.+....|.-+.+.|+.         .++. .++.|.-||.+-. . .+.
T Consensus       346 nlil~~~~~~-----~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  346 NLILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             ceEeeCCCCc-----CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            3445555554     77889999999999999965567777787764         3333 5889999998742 2 121


Q ss_pred             Eeecc--CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          209 QIETI--ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       209 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      ..+.+  ......-|+...+++. ++. |+.+|.|++||--..+ ...+.+-..+|..+..+.+|++|+..|. .. +.+
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG~-Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-ty-LlL  496 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESGY-IVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TY-LLL  496 (644)
T ss_pred             eeeccccccccccceeeecCCce-EEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cE-EEE
Confidence            11221  1111222333333443 443 4689999999974433 3456788899999999999999876654 44 666


Q ss_pred             EEc
Q 015650          286 FNT  288 (403)
Q Consensus       286 wd~  288 (403)
                      -++
T Consensus       497 i~t  499 (644)
T KOG2395|consen  497 IDT  499 (644)
T ss_pred             EEE
Confidence            654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.17  E-value=0.12  Score=43.64  Aligned_cols=190  Identities=11%  Similarity=0.113  Sum_probs=114.4

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCc--eeEEEEecCceEEE--ecCeEE
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE--VRSVKLRRDRIIVV--LEQKIF  197 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~--~d~~i~  197 (403)
                      ..+......-...+.|..++..+-+.+.-   ....|+.+|+.+++.......+..  -..++...|..+..  -++...
T Consensus        37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   37 ETYPHDPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEE--TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred             EECCCCCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence            44442334455677775666666666653   124799999999998877773333  34567777776666  489999


Q ss_pred             EEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ceeEEe--ecC---CceEEEEEcCCCC
Q 015650          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIM--AHD---SRIACFALTQDGQ  271 (403)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~~--~~~---~~i~~~~~sp~g~  271 (403)
                      +||..+.+.+.++.-. ..-..++  .+++.+++ +-|  ...++.+|..+- ....+.  ...   ..++-+.+- +|.
T Consensus       114 ~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~-SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~  186 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIM-SDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK  186 (264)
T ss_dssp             EEETTTTEEEEEEE-S-SS--EEE--ECSSCEEE-E-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred             EEccccceEEEEEecC-CcceEEE--cCCCEEEE-ECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence            9999999888888643 2333444  66666544 323  467888887762 233332  222   235556665 665


Q ss_pred             EEEEEeCCCcEEEEEEcCCCcEEEEEecC-------------CCcccEEEEEeCCCCCEEEEEe
Q 015650          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRG-------------ADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      +.|=.-.... |..-|..+|+.+..+...             ....-.+.|+|.|..+.|...+
T Consensus       187 IyANVW~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  187 IYANVWQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            5554444555 888999999998877421             0124689999998777665544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK10115 protease 2; Provisional

Probab=97.16  E-value=0.3  Score=48.30  Aligned_cols=240  Identities=10%  Similarity=0.045  Sum_probs=121.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-c-----EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC-CCCceEE
Q 015650           87 TLLHISFNQDHGCFAAGTDH-G-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-YPLNKVM  159 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~-~-----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-~~~~~i~  159 (403)
                      .+..+.++|||++|+.+.|. |     |++.++.++..+ ...+.  .. . ..+.|.+++..++-...+.. .....|+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~--~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLD--NV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-Ccccc--Cc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence            46778999999999988632 2     777788765422 12232  11 1 34777765543322211111 1226789


Q ss_pred             EEECCCC--ceeEEEe-cCCcee-EEEEecCceEEE------ecCeEEEEEcC--CceeeeEeeccCCCceeEEEeeCCC
Q 015650          160 IWDDHQS--RCIGELS-FRSEVR-SVKLRRDRIIVV------LEQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       160 iwd~~~~--~~~~~~~-~~~~i~-~~~~~~~~~~~~------~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      .+++.++  +....+. ...... .+..+.++.+++      .++.+.+|+..  +++....+. ....... .+...++
T Consensus       203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~  280 (686)
T PRK10115        203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDHEY-SLDHYQH  280 (686)
T ss_pred             EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCCEE-EEEeCCC
Confidence            9999888  4444444 222232 333344766655      25679999843  333222222 2222222 2223345


Q ss_pred             eEEEEee-CCccCeEEEEEccC-CceeEEeec-C-CceEEEEEcCCCCEEEEEeCCCc-EEEEEEcCCCcEEEEEecCCC
Q 015650          228 SLVLVCP-GLQKGQVRVEHYAS-KRTKFIMAH-D-SRIACFALTQDGQLLATSSTKGT-LVRIFNTLDGTLLQEVRRGAD  302 (403)
Q Consensus       228 ~~~~~~~-g~~d~~i~v~d~~~-~~~~~~~~~-~-~~i~~~~~sp~g~~l~s~~~dg~-~i~iwd~~~~~~~~~~~~~~~  302 (403)
                      .+++.+. +.....|...++.. +....+..+ . ..|..+.+. .+.++++...++. .|.+++...+ .+..+... .
T Consensus       281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~-~  357 (686)
T PRK10115        281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD-D  357 (686)
T ss_pred             EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC-C
Confidence            6666652 22333444445542 333455555 3 367888886 3344455555654 1444554333 33444311 1


Q ss_pred             cccEEEEEeC--CCCC-EEEEEe---CCCcEEEEEeecCC
Q 015650          303 RAEIYSLAFS--SNAQ-WLAVSS---DKGTVHVFNLKVNS  336 (403)
Q Consensus       303 ~~~v~~l~~s--~d~~-~l~s~~---~dg~v~iwd~~~~~  336 (403)
                      ...+..+.++  +++. ++++.+   .-+.++.+|+.+++
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        358 PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            2233334444  4444 444333   45678888887754

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.14  E-value=0.13  Score=43.63  Aligned_cols=191  Identities=8%  Similarity=0.029  Sum_probs=112.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ..+-...|.++.|+|+.+.|.+..++. -.|+-...++.+....+.  .-...-.+.+..++.++++..++     +.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~--g~~DpE~Ieyig~n~fvi~dER~-----~~l~  153 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT--GFSDPETIEYIGGNQFVIVDERD-----RALY  153 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc--ccCChhHeEEecCCEEEEEehhc-----ceEE
Confidence            344555699999999999988887766 444433344444333443  34455667888899999999988     9999


Q ss_pred             EEECCCCceeE-----EEe-----c-CCceeEEEEecCceEEE---ecCeEEEEEcCCce-e--eeEeec-------cCC
Q 015650          160 IWDDHQSRCIG-----ELS-----F-RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-L--LHQIET-------IAN  215 (403)
Q Consensus       160 iwd~~~~~~~~-----~~~-----~-~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~-~--~~~~~~-------~~~  215 (403)
                      ++.+.....+.     .+.     + ......++|.|....+.   ..+-+.||...... .  +.....       .-.
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~  233 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL  233 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence            99876653221     122     2 44567899999654444   24445555443221 0  010001       122


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCC---------ceEEEEEcCCCCEEEEEeCCCc
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGT  281 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~---------~i~~~~~sp~g~~l~s~~~dg~  281 (403)
                      .+..+.+.+..+.+++.+  .+++.+.-.|.....+..+.-+.+         ....++..++|.+. ..|+-+.
T Consensus       234 DvSgl~~~~~~~~LLVLS--~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY-IvSEPnl  305 (316)
T COG3204         234 DVSGLEFNAITNSLLVLS--DESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY-IVSEPNL  305 (316)
T ss_pred             ccccceecCCCCcEEEEe--cCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE-EEecCCc
Confidence            345677777777776664  577888888877765444332221         23456777766543 3344443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.11  E-value=0.21  Score=45.54  Aligned_cols=77  Identities=16%  Similarity=0.287  Sum_probs=50.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC-CC----------------CCE-EEE
Q 015650          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS-SN----------------AQW-LAV  320 (403)
Q Consensus       259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s-~d----------------~~~-l~s  320 (403)
                      ..+.+++.+|++++.|+...-|. |.++|+.++..++.+++-.+ ..+.=+... ..                ..+ ++-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYRd-Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYRD-AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCcc-ceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            45788999999998888777788 99999999988887775211 111111110 10                112 233


Q ss_pred             EeCCCcEEEEEeecCCC
Q 015650          321 SSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       321 ~~~dg~v~iwd~~~~~~  337 (403)
                      +-.-|.|-||.++++..
T Consensus       386 aprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPR  402 (415)
T ss_pred             eccCCeEEEEecCCCCE
Confidence            45678888998888774

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.06  E-value=0.042  Score=46.09  Aligned_cols=158  Identities=11%  Similarity=0.073  Sum_probs=103.2

Q ss_pred             CCCceeEEEecCCceeEEEEecCceEEE-e----cCeEEEEEcCCceeeeEeeccCC--CceeEEEeeCCCeEEEEeeCC
Q 015650          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      +.|+++........-..|+++|.....+ .    .-...++|..+.+...++....+  ....=.|++++..+| ++-+.
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LY-ATEnd  134 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLY-ATEND  134 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEE-eecCC
Confidence            4566666666666777888888644333 2    33578899988777666643332  223457899987654 33222


Q ss_pred             ---ccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeC------C------------CcEEEEEEcCCCcE
Q 015650          237 ---QKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSST------K------------GTLVRIFNTLDGTL  293 (403)
Q Consensus       237 ---~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~------d------------g~~i~iwd~~~~~~  293 (403)
                         .-|.|-|||.+.  .++-.+..|.-....+.+.+||+.|+.+..      |            -. +.+.|..+|++
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS-lvlld~atG~l  213 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS-LVLLDAATGNL  213 (366)
T ss_pred             CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc-EEEEeccccch
Confidence               247899999986  345567778878889999999999987543      0            12 44455556666


Q ss_pred             EEEEecC--CCcccEEEEEeCCCCCEEEEEeC
Q 015650          294 LQEVRRG--ADRAEIYSLAFSSNAQWLAVSSD  323 (403)
Q Consensus       294 ~~~~~~~--~~~~~v~~l~~s~d~~~l~s~~~  323 (403)
                      +.+....  .+.-.|..++..+||..++.+-.
T Consensus       214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             hhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence            5544332  34457888999999887776643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.92  E-value=0.41  Score=45.73  Aligned_cols=189  Identities=14%  Similarity=0.214  Sum_probs=104.0

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce-eE-------EEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-GV-------VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~v-------~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      ++.++++..++.|.-+|..+++.+........... ..       ..+.+..+..++  +..+     +.|.-.|.++|+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v--~t~d-----g~l~ALDa~TGk  141 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFF--GTLD-----ARLVALDAKTGK  141 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEE--EcCC-----CEEEEEECCCCC
Confidence            34444444455577778877777765544311100 00       112233333333  3334     889999999999


Q ss_pred             eeEEEecC-----CceeE-EEEecCceEEE-e-------cCeEEEEEcCCceeeeEeeccCCC-----------------
Q 015650          168 CIGELSFR-----SEVRS-VKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP-----------------  216 (403)
Q Consensus       168 ~~~~~~~~-----~~i~~-~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~-----------------  216 (403)
                      .+......     ..+.+ ..+. ++.+++ .       +|.|+.+|.++|+.+..+......                 
T Consensus       142 ~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~  220 (527)
T TIGR03075       142 VVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA  220 (527)
T ss_pred             EEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence            88776521     11211 1122 445554 2       578999999999988765432111                 


Q ss_pred             --------------c-eeEEEeeCCCeEEEEeeCC---cc-----------CeEEEEEccCCceeEE-e--ecCC-----
Q 015650          217 --------------K-GLCAVSQGVGSLVLVCPGL---QK-----------GQVRVEHYASKRTKFI-M--AHDS-----  259 (403)
Q Consensus       217 --------------~-~~~~~~~~~~~~~~~~~g~---~d-----------~~i~v~d~~~~~~~~~-~--~~~~-----  259 (403)
                                    + ..+++.+..+.+|+.+ |.   .+           ..|.-.|.++++++-. +  .|..     
T Consensus       221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~t-Gnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~  299 (527)
T TIGR03075       221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGT-GNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG  299 (527)
T ss_pred             CCCCCCccccCCCCccCceeEcCCCCeEEEeC-CCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence                          0 0234455455555554 21   01           1566677777765432 1  2321     


Q ss_pred             --ceEEEEEcCCCC---EEEEEeCCCcEEEEEEcCCCcEE
Q 015650          260 --RIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLL  294 (403)
Q Consensus       260 --~i~~~~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~  294 (403)
                        ...-+.+..+|+   .++.+..+|. +++.|.++|+.+
T Consensus       300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i  338 (527)
T TIGR03075       300 VNEMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL  338 (527)
T ss_pred             CCCcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence              111122334676   7788999999 999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.88  E-value=0.0057  Score=36.38  Aligned_cols=34  Identities=15%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ....|..++|+|...+||.++.+|.|.++++ +++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            3467999999999999999999999999999 444

>PHA02713 hypothetical protein; Provisional

Probab=96.86  E-value=0.32  Score=46.85  Aligned_cols=216  Identities=13%  Similarity=0.100  Sum_probs=100.5

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEE--EecCCceeEEEEec
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--LSFRSEVRSVKLRR  185 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~--~~~~~~i~~~~~~~  185 (403)
                      +..||..+.+-.....+.  ....-.+.+...+.+++++|..........+..||..++.....  +.....-.+++...
T Consensus       274 v~~yd~~~~~W~~l~~mp--~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        274 ILVYNINTMEYSVISTIP--NHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             EEEEeCCCCeEEECCCCC--ccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            667777665543323332  11111233334555666655321111125688888877643211  11111112333333


Q ss_pred             CceEEE--ec-----CeEEEEEcCCcee--eeEeeccCCCceeEEEeeCCCeEEEEeeCCc-------------------
Q 015650          186 DRIIVV--LE-----QKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQ-------------------  237 (403)
Q Consensus       186 ~~~~~~--~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------------------  237 (403)
                      +..+++  .+     .++..||..+.+-  +..+.........+   .-++.+|++ +|..                   
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~---~~~g~IYvi-GG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC---VLDQYIYII-GGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE---EECCEEEEE-eCCCccccccccccccccccccc
Confidence            333444  12     2488899876432  22222111111112   223444443 3422                   


Q ss_pred             ---cCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCC------cEEEEEEcCC-CcEE--EEEecCCC
Q 015650          238 ---KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKG------TLVRIFNTLD-GTLL--QEVRRGAD  302 (403)
Q Consensus       238 ---d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg------~~i~iwd~~~-~~~~--~~~~~~~~  302 (403)
                         -..+..||..+..-..+..-   ......+.+  +|++.+.|+.++      . +..||..+ .+-.  ..+..  .
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~  502 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--R  502 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--c
Confidence               13477788777554333211   111112222  677777777542      3 67899876 4432  22221  1


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCC--cEEEEEeecCC
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKG--TVHVFNLKVNS  336 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg--~v~iwd~~~~~  336 (403)
                      ......+.+  +|++.++|+.+|  .+..||..+.+
T Consensus       503 r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        503 LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             cccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            122222333  788889999888  56666666655

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.81  E-value=0.32  Score=44.34  Aligned_cols=194  Identities=18%  Similarity=0.250  Sum_probs=97.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEeccc-----CcceeEEEEeee-----CC---eEEE
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-----GGGIGVVEMLFR-----CN---ILAL  144 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~-----~~---~~~~  144 (403)
                      .......+.|++++.| |=-++|+|.++| +.|.|++...-++...+..     .....++.+.|.     .|   ...+
T Consensus        80 ~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            3445557899999997 556899998666 9999998777776655542     234456667664     23   2455


Q ss_pred             eeCCCCCCCCCceEEEEECCC---Ccee----EEE-ecCCceeEEE-EecC----------------------ceEEE-e
Q 015650          145 VGGGPDPQYPLNKVMIWDDHQ---SRCI----GEL-SFRSEVRSVK-LRRD----------------------RIIVV-L  192 (403)
Q Consensus       145 ~s~~~d~~~~~~~i~iwd~~~---~~~~----~~~-~~~~~i~~~~-~~~~----------------------~~~~~-~  192 (403)
                      ..|...     |.+.+|.+.-   +...    ... .+.++|..+. ++.+                      +.+++ +
T Consensus       159 ~vGTn~-----G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  159 LVGTNS-----GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEETT-----SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             EEEeCC-----CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence            555555     8999997641   2111    112 2455665554 3222                      23333 6


Q ss_pred             cCeEEEEEcCCceeeeEeeccCCCceeEEEee---CCCeEEEEeeCCccCeEEEEEccC-CceeEEeec----CCceEEE
Q 015650          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ---GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH----DSRIACF  264 (403)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~----~~~i~~~  264 (403)
                      +..++++.+.+.+..+...........+++.+   ......+++- ..+|.|++|.+.. +.+..+...    ...+...
T Consensus       234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l-~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCL-FNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEE-ETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEE-ECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            88999999887766554431111222333421   1122233332 3789999999987 444343332    2234456


Q ss_pred             EEcCCCCEEEEEeCC
Q 015650          265 ALTQDGQLLATSSTK  279 (403)
Q Consensus       265 ~~sp~g~~l~s~~~d  279 (403)
                      .++++|..++-.+..
T Consensus       313 sis~~Gdi~~~~gps  327 (395)
T PF08596_consen  313 SISRNGDIFYWTGPS  327 (395)
T ss_dssp             EE-TTS-EEEE-SSS
T ss_pred             EECCCCCEEEEeCcc
Confidence            678888877655443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.78  E-value=0.39  Score=43.44  Aligned_cols=189  Identities=12%  Similarity=0.090  Sum_probs=86.5

Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCCC----ceeEEEec----C----CceeEEEEecCceEEEe---------cCeEEEE
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELSF----R----SEVRSVKLRRDRIIVVL---------EQKIFVY  199 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~~----~~~~~~~~----~----~~i~~~~~~~~~~~~~~---------d~~i~i~  199 (403)
                      ..+++.+-..     +.|+|+|+.+.    ++.+.++.    .    .....+..-|+|.++++         -|.+.++
T Consensus        88 r~Li~PgL~S-----srIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll  162 (461)
T PF05694_consen   88 RYLILPGLRS-----SRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL  162 (461)
T ss_dssp             -EEEEEBTTT-------EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred             CcEEeeeecc-----CcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence            3445555455     89999998743    44555541    1    22344556678866651         3468888


Q ss_pred             EcCCceeeeEeeccCC---CceeEEEeeCCCeEEEEee-------------------CCccCeEEEEEccCCceeE-Eee
Q 015650          200 NFADLKLLHQIETIAN---PKGLCAVSQGVGSLVLVCP-------------------GLQKGQVRVEHYASKRTKF-IMA  256 (403)
Q Consensus       200 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------------g~~d~~i~v~d~~~~~~~~-~~~  256 (403)
                      |-++.+.....+....   ..+.+.+.|..+  +++++                   +.....+.+||+...+..+ +.-
T Consensus       163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             -TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             cCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            8877776666544322   123344555443  23321                   1123689999999976554 332


Q ss_pred             cC--CceEEEEEc--CCCCEEEEEeC-CCcEEEEEEc-CCCc----EEEEEecCC---------------CcccEEEEEe
Q 015650          257 HD--SRIACFALT--QDGQLLATSST-KGTLVRIFNT-LDGT----LLQEVRRGA---------------DRAEIYSLAF  311 (403)
Q Consensus       257 ~~--~~i~~~~~s--p~g~~l~s~~~-dg~~i~iwd~-~~~~----~~~~~~~~~---------------~~~~v~~l~~  311 (403)
                      -.  .....+.|.  |+..+=++++. ..+ |..|-- ..++    .+..+....               -..-|+.|.+
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i  319 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI  319 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence            21  235567775  44555444443 344 555533 3332    222222100               0245899999


Q ss_pred             CCCCCEEEEEe-CCCcEEEEEeecCCC
Q 015650          312 SSNAQWLAVSS-DKGTVHVFNLKVNSG  337 (403)
Q Consensus       312 s~d~~~l~s~~-~dg~v~iwd~~~~~~  337 (403)
                      |.|.++|...+ .+|.|+.||+....+
T Consensus       320 SlDDrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  320 SLDDRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             -TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             ccCCCEEEEEcccCCcEEEEecCCCCC
Confidence            99999997766 899999999998774

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.71  E-value=0.31  Score=41.39  Aligned_cols=162  Identities=7%  Similarity=0.076  Sum_probs=102.5

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe---cCeEEEEEc
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNF  201 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---d~~i~i~d~  201 (403)
                      +....+.++.|+++...+++....     ..-.++=..+|+.++++.  .-.....+.+..++.+++.   ++.++++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcceEEEecCC-----CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            445569999999998877776665     556666668899999987  4456677888899998884   567777766


Q ss_pred             CCceeeeE-------ee---ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc--e--eEEee-------cCCc
Q 015650          202 ADLKLLHQ-------IE---TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--T--KFIMA-------HDSR  260 (403)
Q Consensus       202 ~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~--~--~~~~~-------~~~~  260 (403)
                      .....+..       +.   ........+++.+....++++=   +..-+.||.+....  .  .....       .-..
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D  234 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD  234 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---ccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence            54321111       11   1133445689999888877763   55567777665422  1  11111       1234


Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          261 IACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       261 i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      |.++.|++. +.+|+-+.+++. |.-.|. .|+.+..+.
T Consensus       235 vSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~ls  271 (316)
T COG3204         235 VSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELLS  271 (316)
T ss_pred             cccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeEE
Confidence            778888874 555566666666 777775 455444443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.65  E-value=0.0075  Score=35.87  Aligned_cols=34  Identities=21%  Similarity=0.410  Sum_probs=29.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 015650          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (403)
                      ...|.+++|+|...+||.++.+|. |.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcC
Confidence            456899999999999999999999 999998 5554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.64  E-value=0.29  Score=40.06  Aligned_cols=202  Identities=15%  Similarity=0.149  Sum_probs=112.0

Q ss_pred             CCcEEEEEcCCCeeEEEEecccCcc--eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC--CCceeEEEe------c
Q 015650          105 DHGFRIYNCDPFREIFRRDFERGGG--IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS------F  174 (403)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~--~~~~~~~~~------~  174 (403)
                      .+.|.-||+...+. ....++ +..  ..+.-+.-.++. +.+..+..     -.|.-||..  .-...+++.      .
T Consensus        36 ag~v~r~D~~qn~v-~ra~ie-~p~~ag~ilpv~~~~q~-~~v~~G~k-----f~i~nwd~~~~~a~v~~t~~ev~~d~k  107 (310)
T KOG4499|consen   36 AGEVHRYDIEQNKV-YRAKIE-GPPSAGFILPVEGGPQE-FAVGCGSK-----FVIVNWDGVSESAKVYRTLFEVQPDRK  107 (310)
T ss_pred             cCceehhhhhhhhe-EEEEEe-cCcceeEEEEecCCCce-EEEeecce-----EEEEEcccccceeeeeeeccccCchHH
Confidence            34466699876443 334444 221  112222222333 34444432     345557632  223333321      2


Q ss_pred             CCceeEEEEecCceEEE---e---------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650          175 RSEVRSVKLRRDRIIVV---L---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (403)
Q Consensus       175 ~~~i~~~~~~~~~~~~~---~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (403)
                      ....+.-..+|+|++.+   .         .|.++.|-..  ..+..+...-.--..++|+.+.+.+++.-  +.+-.|.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD--sln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYID--SLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEc--cCceEEe
Confidence            45667778889999976   1         3456665532  22222222223335678887777666653  5677787


Q ss_pred             EEEc--cCCce------eEEee---c-CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          243 VEHY--ASKRT------KFIMA---H-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       243 v~d~--~~~~~------~~~~~---~-~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      -||.  .++.+      ..++.   . .-....+++..+|++.++.-+.++ |...|..+|+.+.++...  ...|++++
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eiklP--t~qitscc  260 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKLP--TPQITSCC  260 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEcC--CCceEEEE
Confidence            7884  33221      11111   1 112234566778888887777777 999999999999999864  46899999


Q ss_pred             eCC-CCCEEEEE
Q 015650          311 FSS-NAQWLAVS  321 (403)
Q Consensus       311 ~s~-d~~~l~s~  321 (403)
                      |-- +-..|.+.
T Consensus       261 FgGkn~d~~yvT  272 (310)
T KOG4499|consen  261 FGGKNLDILYVT  272 (310)
T ss_pred             ecCCCccEEEEE
Confidence            953 22344443

>PRK10115 protease 2; Provisional

Probab=96.49  E-value=1  Score=44.64  Aligned_cols=202  Identities=6%  Similarity=-0.044  Sum_probs=105.6

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---e-c-----CeEEEEE
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---L-E-----QKIFVYN  200 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~-d-----~~i~i~d  200 (403)
                      ..+..+.+++++..++-+.+........|++.|+.+|+.+...- ...-..++|.+|+..++   . +     ..|+.++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            45667788888876664433222223578999998886432221 11114699999876555   2 1     3688889


Q ss_pred             cCCc--eeeeEeeccCCCceeEEEee-CCCeEEEEeeCCccCeEEEEEcc--CCceeEEeecCCc-eEEEEEcCCCCEEE
Q 015650          201 FADL--KLLHQIETIANPKGLCAVSQ-GVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSR-IACFALTQDGQLLA  274 (403)
Q Consensus       201 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~d~~i~v~d~~--~~~~~~~~~~~~~-i~~~~~sp~g~~l~  274 (403)
                      +.++  +....+...........+.. +++.+++.+....++.+.+++..  ......+..+... ...+. +..+.+++
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~  284 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL  284 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence            8887  33334443333333233333 66666666655566789998853  2332333333322 22222 32333333


Q ss_pred             EEeCCC-c-EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          275 TSSTKG-T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       275 s~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      ....+. . .|...++.+......+..+.....|..+.+. .+.++++...+|.-+++-++.
T Consensus       285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~  345 (686)
T PRK10115        285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINR  345 (686)
T ss_pred             EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcC
Confidence            322222 2 1333444421122233332122468888887 334556666788766666553

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.39  E-value=1.2  Score=44.30  Aligned_cols=213  Identities=12%  Similarity=0.188  Sum_probs=124.2

Q ss_pred             EEEEEcCCCeeEEEEecccCcce---eEEEEeeeCC-eEEEeeC-CCC-C---CCCCceEEEEECCCCceeEE---EecC
Q 015650          108 FRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCN-ILALVGG-GPD-P---QYPLNKVMIWDDHQSRCIGE---LSFR  175 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~s~-~~d-~---~~~~~~i~iwd~~~~~~~~~---~~~~  175 (403)
                      ++++|-++.+......+.  ...   .+.+..|..| ..+++.| +.- |   ..-.|.|.++.+..++.++.   ..-+
T Consensus       752 l~vlD~nTf~vl~~hef~--~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~  829 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFE--RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK  829 (1096)
T ss_pred             EEEecCCceeEEeecccc--ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence            678887777766555554  333   3444447655 3333332 210 0   01127788888776333322   2245


Q ss_pred             CceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--Ccee
Q 015650          176 SEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK  252 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~  252 (403)
                      +.+.++..- +|++++ .+..|++|++.+.+.++.-..+..++..+.+.-.++.++++   .--+.+.+.-.+.  +...
T Consensus       830 Gav~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~Vg---Dlm~Sitll~y~~~eg~f~  905 (1096)
T KOG1897|consen  830 GAVYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVG---DLMRSITLLQYKGDEGNFE  905 (1096)
T ss_pred             cceeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEe---eccceEEEEEEeccCCceE
Confidence            555555543 566666 78999999998887776666677788888888888865543   3456666554444  3344


Q ss_pred             EE--eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC-------------------CcEEEEEecCCCcccEEEE--
Q 015650          253 FI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------------------GTLLQEVRRGADRAEIYSL--  309 (403)
Q Consensus       253 ~~--~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~-------------------~~~~~~~~~~~~~~~v~~l--  309 (403)
                      .+  ..+..+++++.+-.+..+| -+..+|. +.+-...+                   |+.+..++   |..-|..+  
T Consensus       906 evArD~~p~Wmtaveil~~d~yl-gae~~gN-lf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~---hg~lv~~~~~  980 (1096)
T KOG1897|consen  906 EVARDYNPNWMTAVEILDDDTYL-GAENSGN-LFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR---HGSLVMQLGD  980 (1096)
T ss_pred             EeehhhCccceeeEEEecCceEE-eeccccc-EEEEEecCCCCchhhhhcccceeeEEeccceeeee---ecceEeeccc
Confidence            33  3467788888887665554 4556666 66654322                   23333343   33334431  


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEE
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      .-+|-+..++.|..+|.|-+--
T Consensus       981 s~~~~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen  981 SMIPLEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred             cccCCCCcEEEEEccceEEEEE
Confidence            2234455688888899887653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.14  E-value=1.4  Score=42.58  Aligned_cols=189  Identities=16%  Similarity=0.148  Sum_probs=97.0

Q ss_pred             eEEEeeCCCCC-CCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE--ec------CeEEEEEcCCceeeeE
Q 015650          141 ILALVGGGPDP-QYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LE------QKIFVYNFADLKLLHQ  209 (403)
Q Consensus       141 ~~~~~s~~~d~-~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~d------~~i~i~d~~~~~~~~~  209 (403)
                      ...++.|+... ......+..+|..+++....-.  ....-.+++...+..+++  .|      .++..||..+.+-.. 
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence            33444444432 2222578889988775443332  444455667777766666  34      368889987765322 


Q ss_pred             eeccCCCceeEEEeeCCCeEEEEeeCCccC-----eEEEEEccCCceeEEeecCCc---eEEEEEcCCCCEEEEEeCCCc
Q 015650          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKG-----QVRVEHYASKRTKFIMAHDSR---IACFALTQDGQLLATSSTKGT  281 (403)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-----~i~v~d~~~~~~~~~~~~~~~---i~~~~~sp~g~~l~s~~~dg~  281 (403)
                      +..-...-....+..-+..+ .+.+| .||     .+..||..+.+-.........   ...+.+  +|++.++|+.++.
T Consensus       364 ~a~M~~~R~~~~v~~l~g~i-YavGG-~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVLDGKL-YAVGG-FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGS  439 (571)
T ss_pred             cCCccCccccceeEEECCEE-EEEec-cccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCC
Confidence            11111112223333333343 34434 454     467788777554443322222   222223  7888888886653


Q ss_pred             E-----EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCc-----EEEEEeecCC
Q 015650          282 L-----VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT-----VHVFNLKVNS  336 (403)
Q Consensus       282 ~-----i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~-----v~iwd~~~~~  336 (403)
                      .     +..||..+.+....-.-..-..... ++. -++.+.+.||.|+.     |..||..+.+
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence            1     6778877665432221100111111 222 36778888887763     5556666554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.10  E-value=0.022  Score=46.12  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=67.6

Q ss_pred             CCccCeEEEEEccC-Cc-eeEEeecCCceEEE-EEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc-ccEEEEE
Q 015650          235 GLQKGQVRVEHYAS-KR-TKFIMAHDSRIACF-ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLA  310 (403)
Q Consensus       235 g~~d~~i~v~d~~~-~~-~~~~~~~~~~i~~~-~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~  310 (403)
                      |..+|.|.+|.... +. ..........|.++ .--.++.+.++++.+|. |+.|++.-.+.+.....  |. ..+..+.
T Consensus        76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~e~~i  152 (238)
T KOG2444|consen   76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESGEELI  152 (238)
T ss_pred             ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCcceeE
Confidence            55899999998763 11 11111122223332 22235668889999999 99999988887765554  44 4556666


Q ss_pred             eCCCCCEEEEE--eCCCcEEEEEeecCCCCCC
Q 015650          311 FSSNAQWLAVS--SDKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       311 ~s~d~~~l~s~--~~dg~v~iwd~~~~~~~~~  340 (403)
                      .+..++.|+.+  |.|..++.|++..-..+..
T Consensus       153 vv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~  184 (238)
T KOG2444|consen  153 VVGSDEFLKIADTSHDRVLKKWNVEKIKDESP  184 (238)
T ss_pred             EecCCceEEeeccccchhhhhcchhhhhccCc
Confidence            66667777777  7888888888887665443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.96  E-value=1.7  Score=42.00  Aligned_cols=232  Identities=14%  Similarity=0.132  Sum_probs=115.9

Q ss_pred             CCCCEEEEEc-CC------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        95 ~d~~~l~~~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      ..+.+++.|+ .+      .+..||..+........+.  ....-.+++...+.+++++|..........+..||..+++
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~--~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP--SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC--cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3455666666 32      2778887776554444443  3333455555555555554443123334678889988776


Q ss_pred             eeEEEe--cCCceeEEEEecCceEEE--ecC-----eEEEEEcCCcee--eeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          168 CIGELS--FRSEVRSVKLRRDRIIVV--LEQ-----KIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       168 ~~~~~~--~~~~i~~~~~~~~~~~~~--~d~-----~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      -...-.  ....-.+++....-.+++  .||     ++-.||..+.+-  +..+.   ......+...-+..+|++ .|.
T Consensus       361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---~~r~~~gv~~~~g~iYi~-GG~  436 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---TRRSGHGVAVLGGKLYII-GGG  436 (571)
T ss_pred             eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC---cceeeeEEEEECCEEEEE-cCc
Confidence            433211  111112233323333333  233     588888776432  22121   123334444444454444 231


Q ss_pred             c-----cCeEEEEEccCCceeEEee---cCCceEEEEEcCCCCEEEEEeCCCc----EEEEEEcCCCcEEEEEecCCCcc
Q 015650          237 Q-----KGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRA  304 (403)
Q Consensus       237 ~-----d~~i~v~d~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~s~~~dg~----~i~iwd~~~~~~~~~~~~~~~~~  304 (403)
                      .     -..+..||..+..-..+..   .........+  ++.+.+.|+.|+.    .|..||..+.+....-.-.....
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs  514 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS  514 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence            1     1457788888765444322   1112222222  7778888887761    16778887765543321111112


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCc-----EEEEEeecCC
Q 015650          305 EIYSLAFSSNAQWLAVSSDKGT-----VHVFNLKVNS  336 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~~~dg~-----v~iwd~~~~~  336 (403)
                      .+....+  +++..++|+.||.     |..||..+.+
T Consensus       515 ~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  515 AVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence            2222222  6677788887774     5555544443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.86  E-value=0.25  Score=47.34  Aligned_cols=108  Identities=11%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEee--eCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      .+.-+.-+.-++..++..++. +.|||.......+...+.  ....|.++.|  .+++..+.+.+-.     +.|.++.-
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--~~~~I~dLDWtst~d~qsiLaVGf~-----~~v~l~~Q  103 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--EDDPIRDLDWTSTPDGQSILAVGFP-----HHVLLYTQ  103 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--CCCceeeceeeecCCCCEEEEEEcC-----cEEEEEEc
Confidence            344445555556655555555 999999888877777774  4556666665  5677777777766     88888853


Q ss_pred             C---------CCceeEEEe---c-CCceeEEEEecCceEEE-ecCeEEEEEc
Q 015650          164 H---------QSRCIGELS---F-RSEVRSVKLRRDRIIVV-LEQKIFVYNF  201 (403)
Q Consensus       164 ~---------~~~~~~~~~---~-~~~i~~~~~~~~~~~~~-~d~~i~i~d~  201 (403)
                      .         ....++.+.   + ..+|.+..|.++|.+++ +++.+.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence            1         113445544   3 47899999999999988 7889999984

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.54  Score=37.82  Aligned_cols=164  Identities=10%  Similarity=-0.008  Sum_probs=89.7

Q ss_pred             ceeEEEecCCcee--EEEEecCceEEEe-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC
Q 015650          167 RCIGELSFRSEVR--SVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (403)
Q Consensus       167 ~~~~~~~~~~~i~--~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (403)
                      +.++++.|.....  .+.+ .++.++.+     ...|++||+.+++.+.........+..--+..-++.++..+  -.+|
T Consensus        35 evi~~yphDs~sfTQGL~~-~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT--w~eg  111 (262)
T COG3823          35 EVIRTYPHDSTSFTQGLEY-LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT--WKEG  111 (262)
T ss_pred             EEEEeccCchhhhhcceee-eCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE--eccc
Confidence            3455555543322  2333 24444442     55899999999988766544322333333344456666665  4678


Q ss_pred             eEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC---cccEEEEEeCCCCC
Q 015650          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD---RAEIYSLAFSSNAQ  316 (403)
Q Consensus       240 ~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~---~~~v~~l~~s~d~~  316 (403)
                      .-..+|.++-+..--....+.=..++.  |++.|+.+....+ ++.-|-++.....++.....   -..++.+.| -||.
T Consensus       112 vaf~~d~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdGsat-L~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~  187 (262)
T COG3823         112 VAFKYDADTLEELGRFSYEGEGWGLTS--DDKNLIMSDGSAT-LQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGE  187 (262)
T ss_pred             eeEEEChHHhhhhcccccCCcceeeec--CCcceEeeCCceE-EEecCHHHhhhcceEEEEECCeecccccceee-eccE
Confidence            888888777332211122233344443  6666766665566 77777766544443332111   123445566 3666


Q ss_pred             EEEEEeCCCcEEEEEeecCCC
Q 015650          317 WLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       317 ~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ..|-.-.+..|...+.++++.
T Consensus       188 lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         188 LYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             EEEeeeeecceEEEcCCCCcE
Confidence            666555566677777777764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.80  E-value=0.5  Score=45.87  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             ceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-------C-----c--------eeEEeecCCceEEEEEc--CCCCEEE
Q 015650          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------K-----R--------TKFIMAHDSRIACFALT--QDGQLLA  274 (403)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-------~-----~--------~~~~~~~~~~i~~~~~s--p~g~~l~  274 (403)
                      |..+.+..-++.-+++. ..+||.|.+|..+.       .     .        ......-...+..++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~-c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLL-CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEE-EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            44454444344334433 25899999997643       0     0        01112234467889998  7788888


Q ss_pred             EEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCC-----C-EEEEEeCCCcEEEEEee
Q 015650          275 TSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA-----Q-WLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       275 s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~-----~-~l~s~~~dg~v~iwd~~  333 (403)
                      ++++... |.||-.... +.......+.+...|.+|.|-++.     . +|++++-.|.+.+|++.
T Consensus       182 VSsNs~~-VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  182 VSSNSQE-VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EecCCce-EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            8888777 888755432 111111111244678889987643     2 78888999999999983

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.62  Score=37.47  Aligned_cols=103  Identities=9%  Similarity=0.065  Sum_probs=64.2

Q ss_pred             CCCEEEEEc-CC--cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEE
Q 015650           96 DHGCFAAGT-DH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (403)
Q Consensus        96 d~~~l~~~~-~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~  172 (403)
                      +|.++.+.+ -+  .|++|++.+++......+. ....---.+.-..+..+..+..+      |.-..+|..+-+.+..+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc------ceeEEEChHHhhhhccc
Confidence            455655544 22  2999999999888777774 21221122333456667777654      78888999988888888


Q ss_pred             ecCCceeEEEEecCceEEEecCe--EEEEEcCCcee
Q 015650          173 SFRSEVRSVKLRRDRIIVVLEQK--IFVYNFADLKL  206 (403)
Q Consensus       173 ~~~~~i~~~~~~~~~~~~~~d~~--i~i~d~~~~~~  206 (403)
                      ..++.=..++...+. ++.+||+  ++.-|.++...
T Consensus       128 ~y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~  162 (262)
T COG3823         128 SYEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAE  162 (262)
T ss_pred             ccCCcceeeecCCcc-eEeeCCceEEEecCHHHhhh
Confidence            877666666654333 4446664  55555554433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.78  E-value=1.3  Score=39.49  Aligned_cols=238  Identities=13%  Similarity=0.069  Sum_probs=116.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCee-EEEEec---ccCcceeEEEEeeeCC-----eEEEeeCCC--CCCCCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE-IFRRDF---ERGGGIGVVEMLFRCN-----ILALVGGGP--DPQYPL  155 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~-~~~~~~---~~~~~~~v~~~~~~~~-----~~~~~s~~~--d~~~~~  155 (403)
                      ..+.|+|.|||++|++-..+.|++++. .+.. .....+   ..........++++++     .++++....  ......
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            457899999999988776566999983 3332 211222   2245668899999983     445544421  000000


Q ss_pred             ceEEEEECCCC-------cee-EEEec----CCceeEEEEecCceEEEe----------------cCeEEEEEcCCcee-
Q 015650          156 NKVMIWDDHQS-------RCI-GELSF----RSEVRSVKLRRDRIIVVL----------------EQKIFVYNFADLKL-  206 (403)
Q Consensus       156 ~~i~iwd~~~~-------~~~-~~~~~----~~~i~~~~~~~~~~~~~~----------------d~~i~i~d~~~~~~-  206 (403)
                      ..|.-|....+       +.+ ..+..    ...-..|.|.|||.+.++                .|.|.-.+.. ++. 
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence            23443443332       111 11112    334567999999977762                1344444432 220 


Q ss_pred             ------------eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc------------------------
Q 015650          207 ------------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------------------------  250 (403)
Q Consensus       207 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~------------------------  250 (403)
                                  ...+...-.....++|.+....++.+-.| .+..=.|..+..+.                        
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                        11111111112347777774555554444 22222222222100                        


Q ss_pred             -----eeEEeecCCceEEEEEcC-------CCCEEEEEeCCCcEEEEEEcCCCcEEEEEec--CCCcccEEEEEeCCCCC
Q 015650          251 -----TKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAFSSNAQ  316 (403)
Q Consensus       251 -----~~~~~~~~~~i~~~~~sp-------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~s~d~~  316 (403)
                           ......+...+..+.|-.       .|.+|++.-..+. |....+..+..+.....  ......+..|++.|||.
T Consensus       240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~  318 (331)
T PF07995_consen  240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA  318 (331)
T ss_dssp             TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred             CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence                 011122334566676653       4556665555555 77777764433222211  11334799999999999


Q ss_pred             EEEEEeCCCcEE
Q 015650          317 WLAVSSDKGTVH  328 (403)
Q Consensus       317 ~l~s~~~dg~v~  328 (403)
                      +.++...+|.|+
T Consensus       319 Lyv~~d~~G~iy  330 (331)
T PF07995_consen  319 LYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEE-TTTTEE
T ss_pred             EEEEECCCCeEe
Confidence            888888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.78  E-value=0.53  Score=45.23  Aligned_cols=96  Identities=14%  Similarity=0.160  Sum_probs=66.3

Q ss_pred             CccCeEEEEEccCCceeEEe--ecCCceEEEEEc--CCCCEEEEEeCCCcEEEEEEcC---------CCcEEEEEecCCC
Q 015650          236 LQKGQVRVEHYASKRTKFIM--AHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTL---------DGTLLQEVRRGAD  302 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~s--p~g~~l~s~~~dg~~i~iwd~~---------~~~~~~~~~~~~~  302 (403)
                      .....+.|||.+......-.  ...+.|.++.|.  |+|+.+++.+.... |.++--.         +...++.+....+
T Consensus        48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~  126 (631)
T PF12234_consen   48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGPSWAPIRKIDISSH  126 (631)
T ss_pred             CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCcccceeEEEEeecC
Confidence            34578999999987654433  347789999886  68998888888888 8888531         1234455433223


Q ss_pred             c-ccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          303 R-AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       303 ~-~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      . .+|.+..|-++|..++.+  ++.+.|++-.-
T Consensus       127 T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~  157 (631)
T PF12234_consen  127 TPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL  157 (631)
T ss_pred             CCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence            3 579999999998766554  44688876433

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.66  E-value=0.42  Score=43.76  Aligned_cols=141  Identities=11%  Similarity=0.196  Sum_probs=85.6

Q ss_pred             cCceEEEec----CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC-------eEEEEeeCCccCeEEEEEccC-C-ce
Q 015650          185 RDRIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-------SLVLVCPGLQKGQVRVEHYAS-K-RT  251 (403)
Q Consensus       185 ~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~d~~i~v~d~~~-~-~~  251 (403)
                      .|..++..|    ..++-.|++.|+.+.++..+...  .+.+.|..+       +.++   |-.+..|.-.|.+. + ++
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv---GlS~~svFrIDPR~~gNKi  551 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV---GLSDYSVFRIDPRARGNKI  551 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE---eecccceEEecccccCCce
Confidence            445555543    36888899999999988876654  666666532       2222   22445555556544 2 22


Q ss_pred             eEEeecCCceEEEEEcC----CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          252 KFIMAHDSRIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       252 ~~~~~~~~~i~~~~~sp----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                      .. .......+.-.|+.    ...|+|.++..|. |++||--.-+....+.+  ....|..|..+.+|++|++.+. ..+
T Consensus       552 ~v-~esKdY~tKn~Fss~~tTesGyIa~as~kGD-irLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk-~yl  626 (776)
T COG5167         552 KV-VESKDYKTKNKFSSGMTTESGYIAAASRKGD-IRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATCK-NYL  626 (776)
T ss_pred             ee-eeehhccccccccccccccCceEEEecCCCc-eeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEeec-ceE
Confidence            22 22222233333332    4458999999999 99999533333223332  4468999999999999877664 467


Q ss_pred             EEEEeecC
Q 015650          328 HVFNLKVN  335 (403)
Q Consensus       328 ~iwd~~~~  335 (403)
                      .+-|+.-.
T Consensus       627 lL~d~~ik  634 (776)
T COG5167         627 LLTDVPIK  634 (776)
T ss_pred             EEEecccc
Confidence            77777543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.51  E-value=1.1  Score=40.70  Aligned_cols=137  Identities=17%  Similarity=0.153  Sum_probs=74.2

Q ss_pred             CceeEEEEecCceEEEec---------------CeEEEEEcCC--cee--eeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          176 SEVRSVKLRRDRIIVVLE---------------QKIFVYNFAD--LKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~~d---------------~~i~i~d~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      .....|+|.++|++.+.+               +.|.+++-.+  |+.  ...+.........+++.+++  ++++.   
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~---   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT---   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence            345678888888877742               2677776443  322  23333223333556776665  55542   


Q ss_pred             ccCeEEEE-EccCC-----ceeEE-e---e----cCCceEEEEEcCCCCEEEEEeCC-------------------CcEE
Q 015650          237 QKGQVRVE-HYASK-----RTKFI-M---A----HDSRIACFALTQDGQLLATSSTK-------------------GTLV  283 (403)
Q Consensus       237 ~d~~i~v~-d~~~~-----~~~~~-~---~----~~~~i~~~~~sp~g~~l~s~~~d-------------------g~~i  283 (403)
                      . ..|..+ |....     +...+ .   .    +......++|.|||.+.++-+..                   +. |
T Consensus        89 ~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i  166 (367)
T TIGR02604        89 P-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-L  166 (367)
T ss_pred             C-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-E
Confidence            2 334433 44321     22221 1   1    13447789999999877654421                   34 5


Q ss_pred             EEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      .-+|...++ +..+..+ + .....++|+++|+++++-.
T Consensus       167 ~r~~pdg~~-~e~~a~G-~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       167 FRYNPDGGK-LRVVAHG-F-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEEecCCCe-EEEEecC-c-CCCccceECCCCCEEEEcc
Confidence            555554433 3333321 2 3467899999999887644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.49  E-value=0.19  Score=50.34  Aligned_cols=143  Identities=11%  Similarity=0.067  Sum_probs=85.7

Q ss_pred             CCceeEEEEecCceEEE---e--cCeEEEEEcCCceee-----eEeec------cCCCceeEEEeeCCCeEEEEeeCCcc
Q 015650          175 RSEVRSVKLRRDRIIVV---L--EQKIFVYNFADLKLL-----HQIET------IANPKGLCAVSQGVGSLVLVCPGLQK  238 (403)
Q Consensus       175 ~~~i~~~~~~~~~~~~~---~--d~~i~i~d~~~~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (403)
                      .-+|..+...+|+...+   +  +-.|+.||+++...-     .-+..      ......++.|.|.-....+++  ..|
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~--l~d  177 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD--LSD  177 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh--ccc
Confidence            44666777778866554   2  337899999863221     11111      112223455555443333333  467


Q ss_pred             CeEEEEEccCCceeEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC--cccEEEEEeCCCC
Q 015650          239 GQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD--RAEIYSLAFSSNA  315 (403)
Q Consensus       239 ~~i~v~d~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~--~~~v~~l~~s~d~  315 (403)
                      +.|++..+.......- ..-....++++|+|.|+.++.|-..|+ +.-|. ..++....+.+...  ...|.+|.|-...
T Consensus       178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEecce
Confidence            8888776654222111 133456899999999999999999999 77775 45665555544221  2579999998766


Q ss_pred             CEEEEE
Q 015650          316 QWLAVS  321 (403)
Q Consensus       316 ~~l~s~  321 (403)
                      .++++-
T Consensus       256 eflvvy  261 (1405)
T KOG3630|consen  256 EFLVVY  261 (1405)
T ss_pred             eEEEEe
Confidence            666543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.19  E-value=0.024  Score=54.85  Aligned_cols=121  Identities=16%  Similarity=0.207  Sum_probs=71.4

Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEE-----------EcCCCCEEEEEeCCCcEEE
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFA-----------LTQDGQLLATSSTKGTLVR  284 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~-----------~sp~g~~l~s~~~dg~~i~  284 (403)
                      ....+.|.|---.....+.+..++.|++..........+..|..++..++           ++|||..+++++.||. ++
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~  260 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VG  260 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cc
Confidence            33445555532222344457788888887776654455555766555433           6899999999999998 88


Q ss_pred             EEEcC-----CCcEEEEEecCCCcccEEEEEeCCCC---------CEEEEEe-CCCcEEEEEeecCCCC
Q 015650          285 IFNTL-----DGTLLQEVRRGADRAEIYSLAFSSNA---------QWLAVSS-DKGTVHVFNLKVNSGS  338 (403)
Q Consensus       285 iwd~~-----~~~~~~~~~~~~~~~~v~~l~~s~d~---------~~l~s~~-~dg~v~iwd~~~~~~~  338 (403)
                      +|.+.     ..+++...+.+...-.|..+ +..+.         .++++++ .+..+++|.-..-+..
T Consensus       261 f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            77642     34455555543211233333 43221         1345555 4456899987666554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.14  Score=50.85  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-
Q 015650           96 DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-  173 (403)
Q Consensus        96 d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-  173 (403)
                      .+..++.|+++| +-..|+...-..+.+..  ....+|.+++|+.++..++.|-.+     |.|.+||+..++.++.+. 
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne--~v~~~Vtsvafn~dg~~l~~G~~~-----G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNE--RVQGPVTSVAFNQDGSLLLAGLGD-----GHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCC--ccCCcceeeEecCCCceeccccCC-----CcEEEEEccCCcceeeeee
Confidence            456788888887 87777754311111212  356789999999999999999888     999999999999998887 


Q ss_pred             cCCceeEE---EEecCce-EEEecCeEEEEEc
Q 015650          174 FRSEVRSV---KLRRDRI-IVVLEQKIFVYNF  201 (403)
Q Consensus       174 ~~~~i~~~---~~~~~~~-~~~~d~~i~i~d~  201 (403)
                      +..+..++   .+..++. .+..|..=.+|.+
T Consensus       171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l  202 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL  202 (1206)
T ss_pred             cCCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence            55554443   3444444 3445544446654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.08  E-value=0.026  Score=45.71  Aligned_cols=95  Identities=13%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe-ecC-CceEEEEEcC
Q 015650          192 LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHD-SRIACFALTQ  268 (403)
Q Consensus       192 ~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~-~~~-~~i~~~~~sp  268 (403)
                      .+|.|++|+..- +.....+......  ..+.-|.++.-.+++.+..++.|+.|+..-.+..-.. .|. .++..+..+.
T Consensus        78 ~dg~v~~~n~n~~g~~~d~~~s~~e~--i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~  155 (238)
T KOG2444|consen   78 SDGAVYVFNWNLEGAHSDRVCSGEES--IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG  155 (238)
T ss_pred             ccceEEEecCCccchHHHhhhccccc--ceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec
Confidence            699999998763 1111111111122  2233344433234555678999999998775544433 344 3344444444


Q ss_pred             CCCEEEEE--eCCCcEEEEEEcC
Q 015650          269 DGQLLATS--STKGTLVRIFNTL  289 (403)
Q Consensus       269 ~g~~l~s~--~~dg~~i~iwd~~  289 (403)
                      .++.|+.+  |.|.. ++.|++.
T Consensus       156 sd~~i~~a~~S~d~~-~k~W~ve  177 (238)
T KOG2444|consen  156 SDEFLKIADTSHDRV-LKKWNVE  177 (238)
T ss_pred             CCceEEeeccccchh-hhhcchh
Confidence            44455554  55555 5555553

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.07  E-value=0.49  Score=46.65  Aligned_cols=76  Identities=18%  Similarity=0.291  Sum_probs=53.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC----------CcE---EEEEe------cCCCcccEEEEEeCCC---CC
Q 015650          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTL---LQEVR------RGADRAEIYSLAFSSN---AQ  316 (403)
Q Consensus       259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~----------~~~---~~~~~------~~~~~~~v~~l~~s~d---~~  316 (403)
                      -.|..|.++|+|++|+..+..|  |.|-.+..          |+.   -+++.      .......|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3688899999999999988877  55555531          111   11111      1113357899999996   47


Q ss_pred             EEEEEeCCCcEEEEEeecCC
Q 015650          317 WLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       317 ~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +|++-..|+++++||+...+
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            89999999999999997654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.03  E-value=4.3  Score=40.64  Aligned_cols=178  Identities=8%  Similarity=0.003  Sum_probs=90.7

Q ss_pred             ceEEEEECCCCceeEEEecCCcee-------------EEEEec---CceEEEe------------cCeEEEEEcCCceee
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVR-------------SVKLRR---DRIIVVL------------EQKIFVYNFADLKLL  207 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~-------------~~~~~~---~~~~~~~------------d~~i~i~d~~~~~~~  207 (403)
                      +.|.-.|.++|+.+..+...+.|.             .+.-.|   ++.+++.            +|.|+-+|.++|+.+
T Consensus       270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            889999999999887765332221             011111   3444441            478999999999999


Q ss_pred             eEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd  287 (403)
                      ..+.........  ..+.++ .+. ..+...-....+|.+.+.+..-.+...+    .+....+.....-..+. |.-.|
T Consensus       350 W~~~~g~p~~~~--~~~~g~-~~~-~gg~n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~n~y~~s-lvALD  420 (764)
T TIGR03074       350 WAWDPGNPDPTA--PPAPGE-TYT-RNTPNSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPADEKYSSS-LVALD  420 (764)
T ss_pred             eEEecCCCCccc--CCCCCC-Eec-cCCCCccCceEEcCCCCeEEEeCCCccc----cccCCccccCcccccce-EEEEe
Confidence            887642111110  011222 111 1111111233444444443322222111    11011110001112344 77778


Q ss_pred             cCCCcEEEEEecCCCc-------ccEEEEEeCC-CCC---EEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650          288 TLDGTLLQEVRRGADR-------AEIYSLAFSS-NAQ---WLAVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       288 ~~~~~~~~~~~~~~~~-------~~v~~l~~s~-d~~---~l~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      .++|+..-.++...|.       ....-+.+.. +|+   .++.++.+|.++++|-++++.+-..+
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            8888877666542221       0111122222 563   78899999999999999999765543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.95  E-value=2.1  Score=36.60  Aligned_cols=157  Identities=12%  Similarity=0.049  Sum_probs=85.2

Q ss_pred             CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE-C
Q 015650           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD-D  163 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd-~  163 (403)
                      .+.+.++++||+.+|...  +++-.||-........ ..+   ....+....|++++...+....+     ...+++. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~---~g~~l~~PS~d~~g~~W~v~~~~-----~~~~~~~~~   95 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-PVL---TGGSLTRPSWDPDGWVWTVDDGS-----GGVRVVRDS   95 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce-eec---cCCccccccccCCCCEEEEEcCC-----CceEEEEec
Confidence            578899999999887765  5554444433333321 111   22367777888876655554444     4555553 3


Q ss_pred             CCCcee-EEEe---cCCceeEEEEecCceEEE--e----cCeEEEEEcCC---c------eeeeEeeccCCCceeEEEee
Q 015650          164 HQSRCI-GELS---FRSEVRSVKLRRDRIIVV--L----EQKIFVYNFAD---L------KLLHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       164 ~~~~~~-~~~~---~~~~i~~~~~~~~~~~~~--~----d~~i~i~d~~~---~------~~~~~~~~~~~~~~~~~~~~  224 (403)
                      .+++.. ..+.   ....|..+.++|||..++  .    ++.|++--+..   +      ..+.........+..+.|..
T Consensus        96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen   96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            333322 2222   122899999999998877  3    67777776542   2      11111112234556777777


Q ss_pred             CCCeEEEEeeCCccCeEEE-EEccCCceeEE
Q 015650          225 GVGSLVLVCPGLQKGQVRV-EHYASKRTKFI  254 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v-~d~~~~~~~~~  254 (403)
                      +.. ++++. ...++.+.. ..........+
T Consensus       176 ~~~-L~V~~-~~~~~~~~~~v~~dG~~~~~l  204 (253)
T PF10647_consen  176 DST-LVVLG-RSAGGPVVRLVSVDGGPSTPL  204 (253)
T ss_pred             CCE-EEEEe-CCCCCceeEEEEccCCccccc
Confidence            664 33332 334443433 44444443333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.95  E-value=0.11  Score=29.96  Aligned_cols=31  Identities=23%  Similarity=0.407  Sum_probs=26.2

Q ss_pred             ccEEEEEeCCCCC---EEEEEeCCCcEEEEEeec
Q 015650          304 AEIYSLAFSSNAQ---WLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       304 ~~v~~l~~s~d~~---~l~s~~~dg~v~iwd~~~  334 (403)
                      +.|.++.|+|...   +|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3689999998554   888888899999999996

It contains a characteristic DLL sequence motif.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.93  E-value=2.1  Score=36.55  Aligned_cols=159  Identities=11%  Similarity=0.091  Sum_probs=98.5

Q ss_pred             eEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          169 IGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       169 ~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      +..+....-+..+.++.+-.+++ .+.-++|.|+.+...-..+......-..-.+.-.++..+++-   .+.-+.+.|+.
T Consensus        80 ~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVad---lddgfLivdvs  156 (370)
T COG5276          80 LSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVAD---LDDGFLIVDVS  156 (370)
T ss_pred             EEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEee---ccCcEEEEECC
Confidence            33444677788899999888888 677899999987654333322222134556666777766653   35556677887


Q ss_pred             CCceeEEe----ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc-cEEEEEeCCCCCEEEEEe
Q 015650          248 SKRTKFIM----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA-EIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       248 ~~~~~~~~----~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~-~v~~l~~s~d~~~l~s~~  322 (403)
                      ....-++.    .....-..++.  .|++-+.+..|+. +.|-|+.+.....-+. +...+ .+.++..+++..+++.. 
T Consensus       157 dpssP~lagrya~~~~d~~~v~I--SGn~AYvA~~d~G-L~ivDVSnp~sPvli~-~~n~g~g~~sv~vsdnr~y~vvy-  231 (370)
T COG5276         157 DPSSPQLAGRYALPGGDTHDVAI--SGNYAYVAWRDGG-LTIVDVSNPHSPVLIG-SYNTGPGTYSVSVSDNRAYLVVY-  231 (370)
T ss_pred             CCCCceeeeeeccCCCCceeEEE--ecCeEEEEEeCCC-eEEEEccCCCCCeEEE-EEecCCceEEEEecCCeeEEEEc-
Confidence            74432222    22333356666  4667777888999 9999997654332222 11223 78888888776666554 


Q ss_pred             CCCcEEEEEeecCC
Q 015650          323 DKGTVHVFNLKVNS  336 (403)
Q Consensus       323 ~dg~v~iwd~~~~~  336 (403)
                       +.-+.+-|.+..+
T Consensus       232 -~egvlivd~s~~s  244 (370)
T COG5276         232 -DEGVLIVDVSGPS  244 (370)
T ss_pred             -ccceEEEecCCCC
Confidence             3346666776665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.87  E-value=2.7  Score=38.22  Aligned_cols=79  Identities=10%  Similarity=0.119  Sum_probs=40.9

Q ss_pred             eEEEEEccC--Cc---eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEE-EcCC-----CcEEEE---EecCC--Cc
Q 015650          240 QVRVEHYAS--KR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF-NTLD-----GTLLQE---VRRGA--DR  303 (403)
Q Consensus       240 ~i~v~d~~~--~~---~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw-d~~~-----~~~~~~---~~~~~--~~  303 (403)
                      .|.+++-..  ++   ...+...-.....|++.++| +++ ++.. . |..| |...     ++....   +....  +.
T Consensus        48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~  123 (367)
T TIGR02604        48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-D-ILFLRDKDGDDKADGEREVLLSGFGGQINNHH  123 (367)
T ss_pred             EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-e-EEEEeCCCCCCCCCCccEEEEEccCCCCCccc
Confidence            566665332  22   23333333456889999998 444 4444 3 5544 4421     122111   22110  12


Q ss_pred             ccEEEEEeCCCCCEEEEEe
Q 015650          304 AEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~  322 (403)
                      .....++|.|||.+.++-+
T Consensus       124 ~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             ccccCceECCCCCEEEecc
Confidence            3477899999998766555

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.82  E-value=0.17  Score=29.14  Aligned_cols=31  Identities=26%  Similarity=0.483  Sum_probs=25.3

Q ss_pred             CceEEEEEcCCC---CEEEEEeCCCcEEEEEEcCC
Q 015650          259 SRIACFALTQDG---QLLATSSTKGTLVRIFNTLD  290 (403)
Q Consensus       259 ~~i~~~~~sp~g---~~l~s~~~dg~~i~iwd~~~  290 (403)
                      +.+.++.|+|+.   .+|+.+-.-|. |.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence            468999999854   48888777788 99999985

It contains a characteristic DLL sequence motif.

>PHA02713 hypothetical protein; Provisional

Probab=94.76  E-value=2.4  Score=40.93  Aligned_cols=189  Identities=10%  Similarity=0.055  Sum_probs=90.2

Q ss_pred             CCCEEEEEc-C-C-----cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650           96 DHGCFAAGT-D-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        96 d~~~l~~~~-~-~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~  168 (403)
                      ++.+++.|+ + +     .+..||..+........+.  ....-..++...+.+++++|... ......+..||..+.+-
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~--~~R~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI--KNRCRFSLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc--chhhceeEEEECCEEEEECCcCC-CCCCceEEEEECCCCeE
Confidence            566777776 2 1     2667777665433222222  11112233344455555555432 11124688899877643


Q ss_pred             eE--EEecCCceeEEEEecCceEEEe---c-----------------------CeEEEEEcCCcee--eeEeeccCCCce
Q 015650          169 IG--ELSFRSEVRSVKLRRDRIIVVL---E-----------------------QKIFVYNFADLKL--LHQIETIANPKG  218 (403)
Q Consensus       169 ~~--~~~~~~~i~~~~~~~~~~~~~~---d-----------------------~~i~i~d~~~~~~--~~~~~~~~~~~~  218 (403)
                      ..  .+.....-.+++.. ++.+.+.   +                       ..+..||..+.+-  +..+...  ...
T Consensus       380 ~~~~~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~--r~~  456 (557)
T PHA02713        380 KMLPDMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG--TIR  456 (557)
T ss_pred             EECCCCCcccccccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc--ccc
Confidence            22  11111111122222 3443331   1                       2477788766432  2222111  111


Q ss_pred             eEEEeeCCCeEEEEeeCCcc-----CeEEEEEccC-CceeEEe---ecCCceEEEEEcCCCCEEEEEeCCC--cEEEEEE
Q 015650          219 LCAVSQGVGSLVLVCPGLQK-----GQVRVEHYAS-KRTKFIM---AHDSRIACFALTQDGQLLATSSTKG--TLVRIFN  287 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d-----~~i~v~d~~~-~~~~~~~---~~~~~i~~~~~sp~g~~l~s~~~dg--~~i~iwd  287 (403)
                      . ....-++.+|++ +|..+     ..+..||..+ ..-..+.   ........+.+  +|++.++|+.++  . +..||
T Consensus       457 ~-~~~~~~~~IYv~-GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~-~e~yd  531 (557)
T PHA02713        457 P-GVVSHKDDIYVV-CDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML-QDTFN  531 (557)
T ss_pred             C-cEEEECCEEEEE-eCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee-hhhcC
Confidence            1 122223455544 34221     2467888887 4543322   22222333333  788889999888  6 78888


Q ss_pred             cCCCcEEE
Q 015650          288 TLDGTLLQ  295 (403)
Q Consensus       288 ~~~~~~~~  295 (403)
                      ..+.+-..
T Consensus       532 ~~~~~W~~  539 (557)
T PHA02713        532 VYTYEWNH  539 (557)
T ss_pred             cccccccc
Confidence            87766543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.73  E-value=2.5  Score=36.43  Aligned_cols=199  Identities=11%  Similarity=0.073  Sum_probs=114.1

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC------CC-ceeEEEe------cCCceeEEEEecCceE-------
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------QS-RCIGELS------FRSEVRSVKLRRDRII-------  189 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~------~~-~~~~~~~------~~~~i~~~~~~~~~~~-------  189 (403)
                      ..-+.++++|.+.+.++....     +...+||..      .. .++..+.      .....+.+.|+....+       
T Consensus        23 ~N~WGia~~p~~~~WVadngT-----~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~   97 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGT-----GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI   97 (336)
T ss_pred             cccceeEecCCCCEEEecCCc-----ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence            456778888888777777666     899999976      12 2233333      1245777888753222       


Q ss_pred             ------EE--ecCeEEEEEcCCcee-----eeEeecc-CCCc-eeEEEeeC--CCeEEEEeeCCccCeEEEEEccCCcee
Q 015650          190 ------VV--LEQKIFVYNFADLKL-----LHQIETI-ANPK-GLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKRTK  252 (403)
Q Consensus       190 ------~~--~d~~i~i~d~~~~~~-----~~~~~~~-~~~~-~~~~~~~~--~~~~~~~~~g~~d~~i~v~d~~~~~~~  252 (403)
                            |.  .||+|.-|...-+..     ...+... ...+ .-+++...  ++.+|.+  .-..++|.|||-.-.++.
T Consensus        98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaa--dF~~g~IDVFd~~f~~~~  175 (336)
T TIGR03118        98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAA--NFRQGRIDVFKGSFRPPP  175 (336)
T ss_pred             ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEe--ccCCCceEEecCcccccc
Confidence                  22  488999998532211     1122211 1222 23555543  3444333  456889999986654332


Q ss_pred             EE--------ee-----------cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          253 FI--------MA-----------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       253 ~~--------~~-----------~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      .-        ..           ..-.|+-..-.++++.=+.|-.-|. |-+||+ +|+.++.+.....-..-+.|+..|
T Consensus       176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~-VdvFd~-~G~l~~r~as~g~LNaPWG~a~AP  253 (336)
T TIGR03118       176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGY-VNVFTL-NGQLLRRVASSGRLNAPWGLAIAP  253 (336)
T ss_pred             CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcce-EEEEcC-CCcEEEEeccCCcccCCceeeeCh
Confidence            10        00           0011222222333333334444567 999996 788888886433445667787765


Q ss_pred             ------CCCEEEEEeCCCcEEEEEeecCCC
Q 015650          314 ------NAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       314 ------d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                            .|.+|+---.||+|..||..+++-
T Consensus       254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~  283 (336)
T TIGR03118       254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQ  283 (336)
T ss_pred             hhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence                  455666555799999999998874

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.67  E-value=0.76  Score=41.53  Aligned_cols=154  Identities=10%  Similarity=0.017  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650           89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        89 ~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~  168 (403)
                      +.+-|...++.|.+...+++.=|.+..........+.....+.|.++.|++|..+++.--.+     ++|.+++....+.
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~-----~~v~f~nf~~d~~  100 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTS-----KTVDFCNFIPDNS  100 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecC-----ceEEEEecCCCch
Confidence            44556666677777777777777765444333333333455699999999999999988888     9999999754443


Q ss_pred             eEEE----e-cCCceeEEEEecCceEEE-ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650          169 IGEL----S-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (403)
Q Consensus       169 ~~~~----~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (403)
                      ...+    + ....|.+..|.....+.. .+..+-+|.... .+.++..+.+.-.+.-..|.++.+-.++++ +-..+.+
T Consensus       101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t-~~~~n~l  179 (657)
T KOG2377|consen  101 QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST-TVLENVL  179 (657)
T ss_pred             hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec-ccccccc
Confidence            3322    2 344588999988755444 677777776543 344555666777777788888766554443 4233444


Q ss_pred             EEEEccC
Q 015650          242 RVEHYAS  248 (403)
Q Consensus       242 ~v~d~~~  248 (403)
                      .=+-++.
T Consensus       180 npf~~~~  186 (657)
T KOG2377|consen  180 NPFHFRA  186 (657)
T ss_pred             ccEEEee
Confidence            3344443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.53  E-value=3  Score=36.50  Aligned_cols=236  Identities=14%  Similarity=0.134  Sum_probs=101.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEe-cc--cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD-FE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      -...+..|.|..+..-+++|..+.  |+....+....... ..  ........++.|..+..+++. ..      + +.+
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~~------g-~ll   84 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-EP------G-LLL   84 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-ET------T-EEE
T ss_pred             CCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-CC------c-eEE
Confidence            345789999997777788887654  44443333222211 11  011345667778776655543 22      3 334


Q ss_pred             EECCCCceeEEEe----cCCceeEEEEecCceEEEecCeEEEEEcCC-cee-eeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650          161 WDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFAD-LKL-LHQIETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       161 wd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      .....|+.-..+.    .+.....+....++...+....=.||-..+ |+. ..........+..+..++++.  ++++ 
T Consensus        85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vav-  161 (302)
T PF14870_consen   85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGR--YVAV-  161 (302)
T ss_dssp             EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS---EEEE-
T ss_pred             EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCc--EEEE-
Confidence            4444454443332    233334444444444333211122333333 221 111222234455555566665  4444 


Q ss_pred             CCccCeEEEEEccCCceeEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc-CCCcEEEE--EecCCCcccEEEEE
Q 015650          235 GLQKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LDGTLLQE--VRRGADRAEIYSLA  310 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~-~~~~~~~~--~~~~~~~~~v~~l~  310 (403)
                      +.......-||.-...-... ..-...|..|.|.|++.+.+.+ ..|. |++=+. ...+.-..  .......-.+..++
T Consensus       162 s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a  239 (302)
T PF14870_consen  162 SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDLA  239 (302)
T ss_dssp             ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEEE
T ss_pred             ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEEE
Confidence            22333444566544332222 2346789999999998876644 6676 777662 22222211  11111223589999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          311 FSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      |.+++..+++|+ .|.| +...+.++
T Consensus       240 ~~~~~~~wa~gg-~G~l-~~S~DgGk  263 (302)
T PF14870_consen  240 YRPPNEIWAVGG-SGTL-LVSTDGGK  263 (302)
T ss_dssp             ESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred             ecCCCCEEEEeC-CccE-EEeCCCCc
Confidence            999988888765 4433 23444444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.42  E-value=0.33  Score=40.32  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE------ecC------CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV------RRG------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~------~~~------~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      +..++.+|++-+.+|. +++||+.+++.+..-      -..      .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            4458889999999999 999999988765432      100      1345789999999998877765 5788888876


Q ss_pred             cCC
Q 015650          334 VNS  336 (403)
Q Consensus       334 ~~~  336 (403)
                      -+.
T Consensus        96 L~~   98 (219)
T PF07569_consen   96 LGC   98 (219)
T ss_pred             cce
Confidence            543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.26  E-value=5  Score=37.91  Aligned_cols=116  Identities=9%  Similarity=0.048  Sum_probs=68.8

Q ss_pred             CCCCCCeEEEEEcCCC-----CEEEEEcCCcEEEEEcC-----CCeeEEEEecccCccee--EEEEeeeCCeEEEeeCCC
Q 015650           82 SSPPPTLLHISFNQDH-----GCFAAGTDHGFRIYNCD-----PFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGP  149 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~-----~~l~~~~~~~i~iw~~~-----~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~s~~~  149 (403)
                      .+.-+.|..+.|.|-+     .+||+-..+.|.||.+.     ..+....++.+-....+  -..+.|+|....++.-..
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            4455679999999863     57788778889999984     22333333332112222  235667776544333222


Q ss_pred             CCCCCCceEEEEECCC--CceeEEEecCCceeEEEEecCceEEE-e-cC--eEEEEEcC
Q 015650          150 DPQYPLNKVMIWDDHQ--SRCIGELSFRSEVRSVKLRRDRIIVV-L-EQ--KIFVYNFA  202 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~-~-d~--~i~i~d~~  202 (403)
                      .     ..-.++++..  .+....++..+.|.|.+|.+||..++ . ..  .-++||-.
T Consensus       133 ~-----dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 R-----DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             C-----ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            1     1223444433  34445566788999999999998776 3 33  46677743

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.17  E-value=1.9  Score=39.76  Aligned_cols=127  Identities=13%  Similarity=0.205  Sum_probs=80.9

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecC---------ceEEE-ecCeEEEEEcCC-ceeeeEe--ecc--CCCceeE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---------RIIVV-LEQKIFVYNFAD-LKLLHQI--ETI--ANPKGLC  220 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~-~d~~i~i~d~~~-~~~~~~~--~~~--~~~~~~~  220 (403)
                      ..++-.|++.|+.+.+......+ -+.|.|+         +.++. ++..|.-.|.+- |..+...  +..  .....+.
T Consensus       490 ~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~  568 (776)
T COG5167         490 DKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSG  568 (776)
T ss_pred             ccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccccc
Confidence            67888899999999998844444 5667764         33344 677888788664 3222221  111  1111122


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      .-. ...  +++. ++..|.|++||.-..+ ...+.+....|..+..+.+|+++++.|.. . |.+-|++
T Consensus       569 ~tT-esG--yIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y-llL~d~~  632 (776)
T COG5167         569 MTT-ESG--YIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y-LLLTDVP  632 (776)
T ss_pred             ccc-cCc--eEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e-EEEEecc
Confidence            212 222  4554 3488999999966644 34467778889999999999998877765 3 6777764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.06  E-value=3.8  Score=35.86  Aligned_cols=186  Identities=13%  Similarity=0.147  Sum_probs=83.1

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC-ceeEEEe--c----CCceeEEEEecCceEEEecCeEEEEE
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGELS--F----RSEVRSVKLRRDRIIVVLEQKIFVYN  200 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~-~~~~~~~--~----~~~i~~~~~~~~~~~~~~d~~i~i~d  200 (403)
                      ....+.++.|..+..-++.+..      +.  |+....+ +.-....  .    ......|.|..+..+++.+..+.+..
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~------g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T   86 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAY------GT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHT   86 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETT------TE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEE
T ss_pred             CCCceEEEEEecCCEEEEEecC------CE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEe
Confidence            4557888888765555555543      43  3333333 3222211  1    23466788877666666554454444


Q ss_pred             cCCceeeeEeec---cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-Cc-ee-EEeecCCceEEEEEcCCCCEEE
Q 015650          201 FADLKLLHQIET---IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KR-TK-FIMAHDSRIACFALTQDGQLLA  274 (403)
Q Consensus       201 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~-~~-~~~~~~~~i~~~~~sp~g~~l~  274 (403)
                      ...|+.=..+..   .......+....+ ....++.   ..|.|  |.... +. -+ ....-.+.+..+..++||++++
T Consensus        87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~---~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~va  160 (302)
T PF14870_consen   87 TDGGKTWERVPLSSKLPGSPFGITALGD-GSAELAG---DRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVA  160 (302)
T ss_dssp             SSTTSS-EE----TT-SS-EEEEEEEET-TEEEEEE---TT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEE
T ss_pred             cCCCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEc---CCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEE
Confidence            444433222211   1111112222222 2223332   23433  33222 22 12 2234456788889999999888


Q ss_pred             EEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      ++..-.. ..-||--...-...-+.  ....|.+|.|+|++.+.+.+ ..|.|++=+
T Consensus       161 vs~~G~~-~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  161 VSSRGNF-YSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             EETTSSE-EEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             EECcccE-EEEecCCCccceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            7754443 56777432212212221  34789999999998877655 788888776

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.83  E-value=4.7  Score=38.04  Aligned_cols=148  Identities=9%  Similarity=0.034  Sum_probs=84.5

Q ss_pred             CCceeEEEEecCceEEEe-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC---CeEEEEeeCCccCeEEEEEc
Q 015650          175 RSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV---GSLVLVCPGLQKGQVRVEHY  246 (403)
Q Consensus       175 ~~~i~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~d~~i~v~d~  246 (403)
                      -.++..++|......+.+     +|.+++=|-   +.+..    ...+..+.|.|-.   .-.++|.  .....|.||-+
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGq----FEhV~GlsW~P~~~~~~paLLAV--QHkkhVtVWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQ----FEHVHGLSWAPPCTADTPALLAV--QHKKHVTVWQL   89 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCCc---cEeec----cceeeeeeecCcccCCCCceEEE--eccceEEEEEe
Confidence            356778888654444432     445444332   22222    2345667777742   1134555  35788999987


Q ss_pred             cC-----Cc-eeEEe-ecCC----ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC--cEEEEEecCCCcccEEEEEeCC
Q 015650          247 AS-----KR-TKFIM-AHDS----RIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       247 ~~-----~~-~~~~~-~~~~----~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      .-     .+ +.... ....    --..+.|+|....|+.-..... -.++++...  +....+.   ..+.|.|.+|.+
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~---~~G~IhCACWT~  165 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSRVKADIK---TSGLIHCACWTK  165 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCceEEEecc---CCceEEEEEecC
Confidence            63     11 11111 1111    1245679999999887666553 345555433  3333444   457899999999


Q ss_pred             CCCEEEEEe-CCCcEEEEEeecC
Q 015650          314 NAQWLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       314 d~~~l~s~~-~dg~v~iwd~~~~  335 (403)
                      ||+.|+++- ..=.-+|||=...
T Consensus       166 DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  166 DGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cCCEEEEEeCCeEEEEEecCchh
Confidence            999887663 3334677775544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.68  E-value=3.5  Score=34.07  Aligned_cols=98  Identities=13%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             CCceEEEEEcCCCCEEEE-EeCCCcEEEEEE--cCCCc-----EEEEEecCC--CcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          258 DSRIACFALTQDGQLLAT-SSTKGTLVRIFN--TLDGT-----LLQEVRRGA--DRAEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s-~~~dg~~i~iwd--~~~~~-----~~~~~~~~~--~~~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                      -.--+.++|+.+.+.++. -+.+-. |.-||  +.+|.     .+..++...  ..-..-.++..-+|.+.+++-..++|
T Consensus       157 v~IsNgl~Wd~d~K~fY~iDsln~~-V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V  235 (310)
T KOG4499|consen  157 VGISNGLAWDSDAKKFYYIDSLNYE-VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV  235 (310)
T ss_pred             ccCCccccccccCcEEEEEccCceE-EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence            334467889888877754 444555 76687  55543     333333210  01122345556688888888889999


Q ss_pred             EEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccC
Q 015650          328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (403)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d  391 (403)
                      ...|..+++.                                   +.+++++...+++++|...
T Consensus       236 ~~~dp~tGK~-----------------------------------L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  236 QKVDPTTGKI-----------------------------------LLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEECCCCCcE-----------------------------------EEEEEcCCCceEEEEecCC
Confidence            9999999984                                   4457888888999999554

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=93.43  E-value=7.5  Score=37.14  Aligned_cols=189  Identities=14%  Similarity=0.160  Sum_probs=111.7

Q ss_pred             CeEEEeeCCCC-----CCCCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEEe-c--CeEEEEEcCCceeee
Q 015650          140 NILALVGGGPD-----PQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL-E--QKIFVYNFADLKLLH  208 (403)
Q Consensus       140 ~~~~~~s~~~d-----~~~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~-d--~~i~i~d~~~~~~~~  208 (403)
                      ..+.+++....     ..-..+.|.+.| .+.+.+..+.   ..+.|.++.|-.|.-++++ .  .-+++.|+.+.+..+
T Consensus       283 G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~  361 (521)
T PF09826_consen  283 GYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPK  361 (521)
T ss_pred             CEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCc
Confidence            45556665421     112237788888 7777777777   5778999999999999983 2  358899998754443


Q ss_pred             EeeccCCCceeEEEeeCCCeEEEEeeCCccC----------eEEEEEccCC----ceeEEee-cC-------CceEEEEE
Q 015650          209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKG----------QVRVEHYASK----RTKFIMA-HD-------SRIACFAL  266 (403)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~----------~i~v~d~~~~----~~~~~~~-~~-------~~i~~~~~  266 (403)
                      .+-..+-+-.+--++|-++..++..+-..+.          +|.+||+...    ++....- ..       ..-.++.|
T Consensus       362 vlGeLKIPGfS~YLHP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~  441 (521)
T PF09826_consen  362 VLGELKIPGFSDYLHPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLF  441 (521)
T ss_pred             eeeEEECccchhceeECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEE
Confidence            3322223334555677677767766222222          4778998762    1111111 11       12346788


Q ss_pred             cCCCCEEEEEeC-------CCcEEEEEEcC-C-C-cEEEEEecCCCcc-------cEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650          267 TQDGQLLATSST-------KGTLVRIFNTL-D-G-TLLQEVRRGADRA-------EIYSLAFSSNAQWLAVSSDKGTVHV  329 (403)
Q Consensus       267 sp~g~~l~s~~~-------dg~~i~iwd~~-~-~-~~~~~~~~~~~~~-------~v~~l~~s~d~~~l~s~~~dg~v~i  329 (403)
                      +++.++|+.--.       -.. +.|+++. . + +....+.   |..       .+....+.  +..|.+.+ ++.|++
T Consensus       442 ~~~~~ll~~Pv~~~~~~~~~~g-~~v~~i~~~~g~~~~g~i~---h~~~~~~~~~~~~R~lyi--~d~lYtvS-~~~i~~  514 (521)
T PF09826_consen  442 DKEKNLLAFPVSSSYGYFNFQG-AYVFSIDPEDGFTLKGKIT---HPSPDYYYSYQIQRSLYI--GDTLYTVS-DNGIKA  514 (521)
T ss_pred             eCCCCEEEEEEEEccCccccce-EEEEEEeCCCCeEEEEEEE---ccCcccccccceeEEEEE--CCEEEEEE-CCEEEE
Confidence            888887764322       123 7888876 2 2 2333333   333       25555553  44676666 557999


Q ss_pred             EEeecCC
Q 015650          330 FNLKVNS  336 (403)
Q Consensus       330 wd~~~~~  336 (403)
                      +|+++.+
T Consensus       515 ~~l~t~~  521 (521)
T PF09826_consen  515 YDLNTLE  521 (521)
T ss_pred             EehHhcC
Confidence            9988753

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.42  E-value=4.5  Score=34.64  Aligned_cols=194  Identities=7%  Similarity=0.047  Sum_probs=113.8

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE-ecCeEEEEEcCC
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD  203 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~  203 (403)
                      ...-+..+.++.+..+++-.+       .-++|.|+.+...-..+.   ..+--.++..+-+-.+++ .|.-+.++|+.+
T Consensus        85 ~~~l~~Dv~vse~yvyvad~s-------sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsd  157 (370)
T COG5276          85 ARDLFADVRVSEEYVYVADWS-------SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             hhhhhheeEecccEEEEEcCC-------CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCC
Confidence            334566777787777777655       458999998765433333   334556666666666666 477788888876


Q ss_pred             cee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEe
Q 015650          204 LKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSS  277 (403)
Q Consensus       204 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~  277 (403)
                      .+.   .............+++  .++.-++++   .|+-+.+.|+.....-.+.+|   ...+.++..+++..+++.. 
T Consensus       158 pssP~lagrya~~~~d~~~v~I--SGn~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-  231 (370)
T COG5276         158 PSSPQLAGRYALPGGDTHDVAI--SGNYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-  231 (370)
T ss_pred             CCCceeeeeeccCCCCceeEEE--ecCeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-
Confidence            432   2222222222223343  455656664   678899999988554444443   3367888887776666543 


Q ss_pred             CCCcEEEEEEcCCCcEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l-~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                       +.. +.+-|..+.+....+-.- ....+.++ .+.-.+++......+.-+.+-|+.++..
T Consensus       232 -~eg-vlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s  289 (370)
T COG5276         232 -DEG-VLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS  289 (370)
T ss_pred             -ccc-eEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence             333 778887665533333211 12222222 2333466666666677788888877653

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.36  E-value=7.3  Score=36.85  Aligned_cols=136  Identities=9%  Similarity=0.014  Sum_probs=66.3

Q ss_pred             CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCc---eEEEEEcCCC
Q 015650          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR---IACFALTQDG  270 (403)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~---i~~~~~sp~g  270 (403)
                      ..+.++|. .|.....+.........+...+++.  ++..   ....+..+|+.++...........   =..+...|+|
T Consensus       128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~--ll~~---~~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGN--LLIG---SGNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             EEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS---EEEE---EBTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred             ceEEEECC-CccEEEEEccCccccceeeEcCCCC--EEEe---cCCceEEEcCCCCEEEeeecCCcccccccccEECCCC
Confidence            46777774 4666655544333322244445544  4443   237888888877655443322211   2456788999


Q ss_pred             CEEEEEeC-------------CCcEEEEEEcCCCcEEEEEecCCCc-------------------------ccEEEEEeC
Q 015650          271 QLLATSST-------------KGTLVRIFNTLDGTLLQEVRRGADR-------------------------AEIYSLAFS  312 (403)
Q Consensus       271 ~~l~s~~~-------------dg~~i~iwd~~~~~~~~~~~~~~~~-------------------------~~v~~l~~s  312 (403)
                      ++|+.+..             ... |..+| .+|+.+..+....|-                         --++++.+.
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd  279 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD  279 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred             CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence            99987772             112 55566 667666654421110                         247899998


Q ss_pred             C-CCCEEEEEeCCCcEEEEEeecCCC
Q 015650          313 S-NAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       313 ~-d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      + ++.+|+++-.-..|...|.++++.
T Consensus       280 ~~dd~iivSsR~~s~V~~Id~~t~~i  305 (477)
T PF05935_consen  280 PSDDSIIVSSRHQSAVIKIDYRTGKI  305 (477)
T ss_dssp             TTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred             CCCCeEEEEcCcceEEEEEECCCCcE
Confidence            8 555666655555777777666654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.08  E-value=0.82  Score=26.12  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=25.2

Q ss_pred             CCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecC
Q 015650          268 QDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       268 p~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~  300 (403)
                      |++++|+++.. ++. |.++|..+++.+..+..+
T Consensus         1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence            57887777665 556 999999999998888754

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.90  E-value=0.73  Score=38.28  Aligned_cols=66  Identities=12%  Similarity=0.177  Sum_probs=44.0

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEE---------------ecCCceeEEEEecCceEEE--ec
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL---------------SFRSEVRSVKLRRDRIIVV--LE  193 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~~--~d  193 (403)
                      .+..+....+...+++..       |.+++||+.+++.+..-               .....|..+.++.+|.-++  .+
T Consensus        14 ~~~~l~~~~~~Ll~iT~~-------G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn   86 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSS-------GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN   86 (219)
T ss_pred             ceEEEEeCCCEEEEEeCC-------CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence            444455555555555554       99999999998765433               1234577778887777666  67


Q ss_pred             CeEEEEEcCC
Q 015650          194 QKIFVYNFAD  203 (403)
Q Consensus       194 ~~i~i~d~~~  203 (403)
                      |..+.|+..-
T Consensus        87 g~~y~y~~~L   96 (219)
T PF07569_consen   87 GDSYSYSPDL   96 (219)
T ss_pred             CCEEEecccc
Confidence            8888888543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.81  E-value=5.5  Score=41.24  Aligned_cols=160  Identities=16%  Similarity=0.309  Sum_probs=95.4

Q ss_pred             EEecCCceeEEEEecC--ceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEE-eeC-------CCeEEEEeeCCccCe
Q 015650          171 ELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAV-SQG-------VGSLVLVCPGLQKGQ  240 (403)
Q Consensus       171 ~~~~~~~i~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~g~~d~~  240 (403)
                      .+.+...-..+-+-|.  .-++..|+.+.+|+.+++.....+.+..+.|..+.+ .|.       =+++++++   .--.
T Consensus        74 q~~~~~~~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~e  150 (1311)
T KOG1900|consen   74 QFSNIECKTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVE  150 (1311)
T ss_pred             HhcCcceeeeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccce
Confidence            3333333444555553  334447999999999997777777666665554433 222       23344443   2244


Q ss_pred             EEEEEccC----Ccee------EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE--EEcCCC---c-E-----------
Q 015650          241 VRVEHYAS----KRTK------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRI--FNTLDG---T-L-----------  293 (403)
Q Consensus       241 i~v~d~~~----~~~~------~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i--wd~~~~---~-~-----------  293 (403)
                      |.++-+..    ....      .+......|.|+....+|+.+++| .||. |+=  |...++   + +           
T Consensus       151 i~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls  228 (1311)
T KOG1900|consen  151 IVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGN-LYELVYQAEDGWFGSRCRKICLTKSVLS  228 (1311)
T ss_pred             EEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCC-EEEEEEeccCchhhcccccccCchhHHH
Confidence            55543322    2221      222335678899988899877755 5555 442  222221   1 1           


Q ss_pred             -----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          294 -----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       294 -----~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                           +..+. +.+..+|..|.....-..|.+-+..|+|.+|++....
T Consensus       229 ~lvPs~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  229 SLVPSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             HhhhhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence                 11111 2356799999998888899999999999999998844

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.26  E-value=4  Score=37.19  Aligned_cols=79  Identities=18%  Similarity=0.279  Sum_probs=55.2

Q ss_pred             ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEE--EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      ...++|.++.|++|.+.||.--.+.. |.+++....+..  ...+.......|....|+.. .-+|..+..| +-+|-+.
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCce-EEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence            34679999999999999999999999 999987432221  12222223356999999865 6666666555 7777776


Q ss_pred             cCCC
Q 015650          334 VNSG  337 (403)
Q Consensus       334 ~~~~  337 (403)
                      ..+.
T Consensus       141 pekr  144 (657)
T KOG2377|consen  141 PEKR  144 (657)
T ss_pred             hhhh
Confidence            6553

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.19  E-value=8.3  Score=34.49  Aligned_cols=95  Identities=14%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce---eEEEe-----cCCceeEEEEecC----ceEEE--e-c--
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC---IGELS-----FRSEVRSVKLRRD----RIIVV--L-E--  193 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~---~~~~~-----~~~~i~~~~~~~~----~~~~~--~-d--  193 (403)
                      .-+.|+|.|++.++++.- .     |.|++++ ..+..   +..+.     .......++++|+    +.+.+  . .  
T Consensus         3 ~P~~~a~~pdG~l~v~e~-~-----G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~   75 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAER-S-----GRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE   75 (331)
T ss_dssp             SEEEEEEETTSCEEEEET-T-----TEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred             CceEEEEeCCCcEEEEeC-C-----ceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence            346889999988888765 5     9999999 44543   22231     3456789999994    44333  2 1  


Q ss_pred             ------CeEEEEEcCCc-------eee-eEeec---cCCCceeEEEeeCCCeEEEEe
Q 015650          194 ------QKIFVYNFADL-------KLL-HQIET---IANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       194 ------~~i~i~d~~~~-------~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~  233 (403)
                            ..|.-|.+..+       +.+ ..+..   ..+....+.|.|++ .+|+.+
T Consensus        76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~  131 (331)
T PF07995_consen   76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSV  131 (331)
T ss_dssp             SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEE
T ss_pred             CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEe
Confidence                  24555555433       111 12222   23344568899887 566555

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA03098 kelch-like protein; Provisional

Probab=91.69  E-value=13  Score=35.80  Aligned_cols=194  Identities=15%  Similarity=0.172  Sum_probs=86.2

Q ss_pred             eeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-c-CCceeEEEEecCceEEEe-------cCeEEEEEcCCceee
Q 015650          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F-RSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLL  207 (403)
Q Consensus       137 ~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~  207 (403)
                      ...+..++++|..........+..||..+.+....-. . ...-.+++...+..+++.       -..+..||..+.+-.
T Consensus       292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            3445555555543211111367888887765432211 1 111122232333333331       135778887765322


Q ss_pred             eEeeccCCCceeEEEeeCCCeEEEEeeCCc-c----CeEEEEEccCCceeEEeecCC--ceEEEEEcCCCCEEEEEeCC-
Q 015650          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQ-K----GQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTK-  279 (403)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d----~~i~v~d~~~~~~~~~~~~~~--~i~~~~~sp~g~~l~s~~~d-  279 (403)
                      .. .....+....+....++.+++. +|.. +    ..+..||..+..-........  .-.++. .-++++++.|+.+ 
T Consensus       372 ~~-~~lp~~r~~~~~~~~~~~iYv~-GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~  448 (534)
T PHA03098        372 EE-PPLIFPRYNPCVVNVNNLIYVI-GGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISY  448 (534)
T ss_pred             eC-CCcCcCCccceEEEECCEEEEE-CCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccC
Confidence            11 1111111112222234455544 3421 1    457888887755433321111  011222 2366666777643 


Q ss_pred             -------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-----CcEEEEEeecCC
Q 015650          280 -------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (403)
Q Consensus       280 -------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d-----g~v~iwd~~~~~  336 (403)
                             .. +.+||..+.+-...-...........+.+  ++++++.|+.+     ..|.+||.++.+
T Consensus       449 ~~~~~~~~~-v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        449 IDNIKVYNI-VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCCcccce-EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                   23 78889877654322111001111122222  67777777654     457777776654

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.48  E-value=7  Score=36.35  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=25.9

Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      ..|.+++..+..+.|++...+|.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            34999999998899999999999999999863

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.36  E-value=5.3  Score=36.67  Aligned_cols=40  Identities=8%  Similarity=-0.118  Sum_probs=30.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE  118 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~  118 (403)
                      ..+......+.+|..+|++++.|+.++-| |.|+|+..+..
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v  341 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV  341 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence            44555667799999999999888876555 99999876543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.30  E-value=10  Score=33.80  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=42.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCC------CcEEEEEEcCCCcEEEEEec-------------CCCcccEEEEEeCCCCCEEEE
Q 015650          260 RIACFALTQDGQLLATSSTK------GTLVRIFNTLDGTLLQEVRR-------------GADRAEIYSLAFSSNAQWLAV  320 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~d------g~~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~l~~s~d~~~l~s  320 (403)
                      ...+|++.++|.++++.-.+      .. |+.++.. |+.+..+..             ...+...-+|+++|||+.|++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~-I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPR-IRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCE-EEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence            34578887788877766556      56 8888865 766555421             113356889999999997766


Q ss_pred             Ee
Q 015650          321 SS  322 (403)
Q Consensus       321 ~~  322 (403)
                      +.
T Consensus       164 ~~  165 (326)
T PF13449_consen  164 AM  165 (326)
T ss_pred             EE
Confidence            54

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.23  E-value=0.028  Score=50.68  Aligned_cols=135  Identities=19%  Similarity=0.274  Sum_probs=88.9

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCce
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK  205 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~  205 (403)
                      .......|.+.+.-++.++.+     ..+..|| +.++.+.....+....+++|..++..++    ..+.+++||+.+..
T Consensus        35 v~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             cccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence            334445555555445555554     6788888 5666666666777788899988876655    47899999997632


Q ss_pred             eeeEee-ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee-cCCceEEEEEcCCCCEEE
Q 015650          206 LLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLA  274 (403)
Q Consensus       206 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~  274 (403)
                      . ++++ +....-....|++....+.+   |...|.+.+++....+.....+ |...+.++++.+.+..+.
T Consensus       109 t-qqLE~gg~~s~sll~wsKg~~el~i---g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  109 T-QQLESGGTSSKSLLAWSKGTPELVI---GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             H-HHHhccCcchHHHHhhccCCccccc---cccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence            2 2222 22223334666666554433   3477899999988866555555 888999999998875443

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=91.22  E-value=8.2  Score=34.93  Aligned_cols=170  Identities=16%  Similarity=0.188  Sum_probs=92.0

Q ss_pred             ceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          156 NKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      +.|+|.| +....+..++   ....|.++.|..|-.++++   -.-+.+.|+.+.+.-+.+....-+-.+--++|-+++.
T Consensus       406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~  484 (603)
T COG4880         406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENR  484 (603)
T ss_pred             ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCc
Confidence            3455555 4555666665   5778999999999888883   3457888988765444443333333455678888888


Q ss_pred             EEEeeCCccCeE--EEEEccC----CceeE--EeecC----CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          230 VLVCPGLQKGQV--RVEHYAS----KRTKF--IMAHD----SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       230 ~~~~~g~~d~~i--~v~d~~~----~~~~~--~~~~~----~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      ++.. |..+|.+  .+||+..    ++...  +..--    ..-.+..|+|.-.++..-...+.  .|+-++.|..+..-
T Consensus       485 ~lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g--yif~iedg~kl~k~  561 (603)
T COG4880         485 LLGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG--YIFFIEDGSKLRKR  561 (603)
T ss_pred             EEEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc--EEEEEecCceeeeh
Confidence            8876 5566654  5677765    11111  11000    01123445555555444333443  36666676433322


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       298 ~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      .  .+...+...-|..|  +|...+.. .+.++|-++
T Consensus       562 ~--e~k~na~RA~fi~d--ylY~vg~~-ev~~ldens  593 (603)
T COG4880         562 A--ERKLNADRAFFIKD--YLYLVGGN-EVWKLDENS  593 (603)
T ss_pred             h--hhcccceeeEEecc--eEEEeccc-eeEEeccch
Confidence            1  24445555556554  44433322 344444433

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.14  E-value=7.4  Score=31.85  Aligned_cols=134  Identities=18%  Similarity=0.213  Sum_probs=76.8

Q ss_pred             CeEEEeeCCCCCCCCCceEEEEECCC--CceeEEEecCCceeEEEEecCceEEEe------cC---eEEEE-EcCC----
Q 015650          140 NILALVGGGPDPQYPLNKVMIWDDHQ--SRCIGELSFRSEVRSVKLRRDRIIVVL------EQ---KIFVY-NFAD----  203 (403)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~iwd~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~------d~---~i~i~-d~~~----  203 (403)
                      |.+++++++       +.|.+|++.+  .+.+..|..-+.|..+.++..|.++++      ..   .+++| |.+.    
T Consensus        29 d~Lfva~~g-------~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   29 DALFVAASG-------CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             ceEEEEcCC-------CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            566666555       7899999883  356677776789999999999999982      22   56665 2221    


Q ss_pred             ceeee-Eeec---------------------cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----eEEe-
Q 015650          204 LKLLH-QIET---------------------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFIM-  255 (403)
Q Consensus       204 ~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----~~~~-  255 (403)
                      .+.+. .+-+                     ...+..+++..|-...+++++    ++.+.+|.+..+..     ..+. 
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~~~~~~~~~~lDF  177 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQTIQSEKFSFLDF  177 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEEEEecccccEEec
Confidence            11111 1111                     112334566666655555543    57899998765333     1111 


Q ss_pred             -----ec-C-CceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650          256 -----AH-D-SRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (403)
Q Consensus       256 -----~~-~-~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~  288 (403)
                           .| . -....++|  -+.|+|..+...  ++++.+
T Consensus       178 e~~l~~~~~~~~p~~v~i--c~~yiA~~s~~e--v~Vlkl  213 (215)
T PF14761_consen  178 ERSLIDHIDNFKPTQVAI--CEGYIAVMSDLE--VLVLKL  213 (215)
T ss_pred             hhhhhheecCceEEEEEE--EeeEEEEecCCE--EEEEEE
Confidence                 11 1 12344555  456777766553  677654

>PHA03098 kelch-like protein; Provisional

Probab=91.05  E-value=15  Score=35.35  Aligned_cols=191  Identities=13%  Similarity=0.135  Sum_probs=86.3

Q ss_pred             CCCCEEEEEc-CC------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        95 ~d~~~l~~~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      .++.+++.|+ +.      .+..||..+.+-.....+.  ....-.++....+..++++|... ......+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI--YPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC--cccccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCc
Confidence            3556666665 21      2566776655443222221  11112223333455555555432 1112467888887664


Q ss_pred             eeEE--EecCCceeEEEEecCceEEEe----c----CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          168 CIGE--LSFRSEVRSVKLRRDRIIVVL----E----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       168 ~~~~--~~~~~~i~~~~~~~~~~~~~~----d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      -...  +.....-.+++...+..+++.    +    +.+..||+.+.+-...-..........+... ++.+++. +|..
T Consensus       370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~-GG~~  447 (534)
T PHA03098        370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH-DGKIYVI-GGIS  447 (534)
T ss_pred             eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE-CCEEEEE-CCcc
Confidence            3321  111111122333333334431    1    3588899876533221111111111122222 3444444 3422


Q ss_pred             c-------CeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcCCCcE
Q 015650          238 K-------GQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTL  293 (403)
Q Consensus       238 d-------~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~~  293 (403)
                      .       ..+.+||..+.+-..+...   ......+.+  ++++++.|+.+     .. |.+||..+.+-
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W  515 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINE-IEVYDDKTNTW  515 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccce-eEEEeCCCCEE
Confidence            1       2378888887654443211   111122223  67777777754     35 88888776543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.97  E-value=7.7  Score=31.75  Aligned_cols=110  Identities=16%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             EeeCC-CeEEEEeeCCccCeEEEEEccCCceeE--EeecCCceEEEEEcCCCCEEEEEeCCCc-----EEEEE---EcC-
Q 015650          222 VSQGV-GSLVLVCPGLQKGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGT-----LVRIF---NTL-  289 (403)
Q Consensus       222 ~~~~~-~~~~~~~~g~~d~~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~s~~~dg~-----~i~iw---d~~-  289 (403)
                      +...+ +.++++++   ...|.+|++.......  ....-+.|..+.++..|+||++--.+..     .+|+|   +.. 
T Consensus        23 ~c~~g~d~Lfva~~---g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   23 VCCGGPDALFVAAS---GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             eeccCCceEEEEcC---CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence            33445 56666653   3679999998533222  2234478999999999999998644321     15664   222 


Q ss_pred             -CCcEE---------------------EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          290 -DGTLL---------------------QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       290 -~~~~~---------------------~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                       ...++                     ..++-. -...+.+++-.|-..-|+.|+ ++++.+|.+....
T Consensus       100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             ccCCcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence             11111                     111111 234566777777555555655 5589999998765

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.61  E-value=3.8  Score=41.69  Aligned_cols=113  Identities=10%  Similarity=-0.046  Sum_probs=70.1

Q ss_pred             ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc------eeEEeec------CCceEEEEEcCCCC-EEEEEeCCCcEE
Q 015650          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------TKFIMAH------DSRIACFALTQDGQ-LLATSSTKGTLV  283 (403)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~------~~~~~~~------~~~i~~~~~sp~g~-~l~s~~~dg~~i  283 (403)
                      +..+.+.+|.....+..+ .++..|..||++.-.      ...+..|      .....++.|+|.-. ..+.+..|+. |
T Consensus       103 i~~~v~~~D~t~s~v~~t-sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-l  180 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVST-SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-L  180 (1405)
T ss_pred             ceEEEeccCCceEEEEEe-cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-h
Confidence            344455555444334432 346678899988621      1112222      23456788888532 2355667887 8


Q ss_pred             EEEEcCCCc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          284 RIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       284 ~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      ++..+.... ....+.   .....++++|+|.|+.++.|-..|++.-|...-
T Consensus       181 ~V~~~~~~~~~v~s~p---~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP---VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhhhcccC---cccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence            888764322 222333   346789999999999999999999998886543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.37  E-value=13  Score=34.65  Aligned_cols=77  Identities=14%  Similarity=0.242  Sum_probs=52.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEEEc----------CCCcEEEEEe---------cCCCcccEEEEEeCCCC---CE
Q 015650          260 RIACFALTQDGQLLATSSTKGTLVRIFNT----------LDGTLLQEVR---------RGADRAEIYSLAFSSNA---QW  317 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~dg~~i~iwd~----------~~~~~~~~~~---------~~~~~~~v~~l~~s~d~---~~  317 (403)
                      .|..+..++.|..++-.+.+|.  .|..+          ++|+.....+         .....-.+..++|+|+.   .+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGL--MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCceEEEecCCee--EEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            4677888999999988888884  44433          2343222111         01111356788999986   57


Q ss_pred             EEEEeCCCcEEEEEeecCCCC
Q 015650          318 LAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       318 l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      |..-+.|..|++|++......
T Consensus       183 L~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEEecCcEEEEEecCCcchh
Confidence            777888999999999988765

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.35  E-value=15  Score=34.21  Aligned_cols=57  Identities=18%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE--EEEEe---cCCCcccEEEEEeCCCC
Q 015650          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVR---RGADRAEIYSLAFSSNA  315 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~---~~~~~~~v~~l~~s~d~  315 (403)
                      -.....|+|.|||++|++--..|. |++++..++..  +..+.   ..........|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            345689999999988876554688 99998655432  21111   11124678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.32  E-value=11  Score=32.61  Aligned_cols=217  Identities=13%  Similarity=0.134  Sum_probs=119.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-cEEEEEcCC-----CeeEEEEeccc--C--cceeEEEEeeeCCeEE------------E
Q 015650           87 TLLHISFNQDHGCFAAGTDH-GFRIYNCDP-----FREIFRRDFER--G--GGIGVVEMLFRCNILA------------L  144 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~-----~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~------------~  144 (403)
                      .-+.|+|+|.+.+-++.... ...+||.+.     -...+...+..  +  .....+.+.|+....+            +
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999988776665533 389999861     12122233321  1  1234566666543222            3


Q ss_pred             eeCCCCCCCCCceEEEEECCCCce-----eEEEe--cCCce-eEEEEecC--ceEEE----ecCeEEEEEcCCceeeeE-
Q 015650          145 VGGGPDPQYPLNKVMIWDDHQSRC-----IGELS--FRSEV-RSVKLRRD--RIIVV----LEQKIFVYNFADLKLLHQ-  209 (403)
Q Consensus       145 ~s~~~d~~~~~~~i~iwd~~~~~~-----~~~~~--~~~~i-~~~~~~~~--~~~~~----~d~~i~i~d~~~~~~~~~-  209 (403)
                      +-+.++     |+|.-|...-+..     ...+.  ....| ..+++...  +.+|.    ..++|.+||-. ..++.. 
T Consensus       104 if~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~  177 (336)
T TIGR03118       104 LFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLP  177 (336)
T ss_pred             EEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCC
Confidence            334445     8899997432221     12222  12333 45555532  33333    37899999843 222111 


Q ss_pred             --ee-----ccCCCceeEEEeeCCCeEEEEe-----------eCCccCeEEEEEccCCceeEEe--ecCCceEEEEEcC-
Q 015650          210 --IE-----TIANPKGLCAVSQGVGSLVLVC-----------PGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQ-  268 (403)
Q Consensus       210 --~~-----~~~~~~~~~~~~~~~~~~~~~~-----------~g~~d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~sp-  268 (403)
                        +.     ..-.+..+   -.-+..+|+.+           .|...|.|-+||+....++++.  +.-..-..|+..| 
T Consensus       178 g~F~DP~iPagyAPFnI---qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa  254 (336)
T TIGR03118       178 GSFIDPALPAGYAPFNV---QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPE  254 (336)
T ss_pred             CCccCCCCCCCCCCcce---EEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChh
Confidence              11     00011111   11122333322           2334579999999988877763  2333456777766 


Q ss_pred             -----CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC----cccEEEEEeCC
Q 015650          269 -----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----RAEIYSLAFSS  313 (403)
Q Consensus       269 -----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~s~  313 (403)
                           .|.+|+---.||+ |..||..+++.+..+.....    ...++.|.|..
T Consensus       255 ~FG~~sg~lLVGNFGDG~-InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       255 SFGSLSGALLVGNFGDGT-INAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hhCCCCCCeEEeecCCce-eEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence                 5777876667999 99999999998887775321    13467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=90.01  E-value=18  Score=34.57  Aligned_cols=103  Identities=13%  Similarity=0.114  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC------------------CCC
Q 015650           95 QDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ------------------YPL  155 (403)
Q Consensus        95 ~d~~~l~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~------------------~~~  155 (403)
                      -||++|.+..++.|.|++..+ .+......+.  -...+..+-.+.+.+.+++......                  ...
T Consensus        20 TDG~yIY~v~~~~l~Iida~p~~~~~~~s~I~--~~~~~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (521)
T PF09826_consen   20 TDGEYIYVVSGGRLYIIDAYPAEEMKVVSRID--LDGSPQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSS   97 (521)
T ss_pred             ECCCEEEEEeCCEEEEEECCCchhceEEEEEe--cCCChhheEEcCCEEEEEEeccccccccccccccccccccccCCce
Confidence            389999999988899999843 2222223333  1112666666777666666433200                  112


Q ss_pred             ceEEEEECCCC---ceeEEEecCCceeEEEEecCceEEEecCeEEEE
Q 015650          156 NKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVY  199 (403)
Q Consensus       156 ~~i~iwd~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~  199 (403)
                      -.+.++|+...   +.+.++...+...+.....+..++++...+.++
T Consensus        98 t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt~~~~~~~  144 (521)
T PF09826_consen   98 TKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVTNSYPNYY  144 (521)
T ss_pred             eEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEEecCCccc
Confidence            46788887654   334444455555555555556666665555555

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.23  E-value=2.5  Score=38.41  Aligned_cols=164  Identities=18%  Similarity=0.140  Sum_probs=91.8

Q ss_pred             eeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceee-eEe-eccCCC----ce-eEEEeeCCCeEEEEeeCCc
Q 015650          168 CIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL-HQI-ETIANP----KG-LCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       168 ~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~-~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~g~~  237 (403)
                      .+..+. ....+..+-..|||+.+.  ...++.++++.+.... +.+ ....+.    +. .+.+-..+..+ ++  +..
T Consensus       212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SL-Lv--~~~  288 (733)
T COG4590         212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSL-LV--VHE  288 (733)
T ss_pred             hhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeE-EE--EcC
Confidence            333344 456788889999999887  5678889988653211 111 111110    11 11111122222 32  257


Q ss_pred             cCeEEEE-EccCCce---e---EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          238 KGQVRVE-HYASKRT---K---FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       238 d~~i~v~-d~~~~~~---~---~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      ||.|.-| |.+....   .   .++-....+..+.=..+.+-+++-+.+|+ +.++.....+.+ .+..  --..+.-++
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~-L~~f~st~~~~l-L~~~--~~~~~~~~~  364 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT-LQSFYSTSEKLL-LFER--AYQAPQLVA  364 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCc-eeeeecccCcce-ehhh--hhcCcceee
Confidence            8888777 5544221   1   11111233333332334556777788888 888765444333 2222  113567789


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      +||.+.+|++- +.|.++++.+++..++-
T Consensus       365 ~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pei  392 (733)
T COG4590         365 MSPNQAYLLSE-DQGKIRLAQLENRNPEI  392 (733)
T ss_pred             eCcccchheee-cCCceEEEEecCCCCCc
Confidence            99999999875 56789999999887643

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.12  E-value=17  Score=35.58  Aligned_cols=68  Identities=16%  Similarity=0.073  Sum_probs=42.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEE-EecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR-RDFERGGGIGVVEMLFRCNILALVGGGP  149 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~s~~~  149 (403)
                      +.-.|. .+-.+.|+.+..+|++.-++.+.||++-....... .-++ .....|..+.+..+|.++.+.+.
T Consensus        79 ~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e-~~~~~I~ec~~f~~GVavlt~~g  147 (829)
T KOG2280|consen   79 ILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFE-SQMSDIVECRFFHNGVAVLTVSG  147 (829)
T ss_pred             HHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccc-cccCceeEEEEecCceEEEecCC
Confidence            333344 78889999999999988888899999854322110 0011 22334555666567777766663

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=88.99  E-value=0.21  Score=48.79  Aligned_cols=98  Identities=13%  Similarity=0.153  Sum_probs=58.8

Q ss_pred             CeEEEEEccC--Cce------eEEeecCCceEEEEEcC---CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          239 GQVRVEHYAS--KRT------KFIMAHDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       239 ~~i~v~d~~~--~~~------~~~~~~~~~i~~~~~sp---~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      |.+.|||++-  +++      .........+.-+.|.|   +..++..+-.++. |++........ ..++.  |...+.
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~~-~l~rs--Hs~~~~  228 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRALR-SLFRS--HSQRVT  228 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc-eeEeeechHHH-HHHHh--cCCCcc
Confidence            5677887654  221      11223334445555554   6667777777777 88776543322 22232  444444


Q ss_pred             EE-----------EeCCCCCEEEEEeCCCcEEEEEee-cCCCCCC
Q 015650          308 SL-----------AFSSNAQWLAVSSDKGTVHVFNLK-VNSGSAR  340 (403)
Q Consensus       308 ~l-----------~~s~d~~~l~s~~~dg~v~iwd~~-~~~~~~~  340 (403)
                      .+           ..||||+.|+.++.||.+++|.+. +++.+++
T Consensus       229 d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~r  273 (1283)
T KOG1916|consen  229 DMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHR  273 (1283)
T ss_pred             cHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHh
Confidence            33           368999999999999999999875 3443333

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.89  E-value=14  Score=38.34  Aligned_cols=73  Identities=8%  Similarity=0.025  Sum_probs=45.1

Q ss_pred             ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      .+...+.+..+......+ .+...+. +-+|+.........+...       ...++.++..++++..||.+.+||++.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g  266 (993)
T KOG1983|consen  196 LIEYESLQVLYYSPTKIL-IGFNRGL-VVIKDRASKYVQSAYLPN-------GQLESRDGSHFVSYHTDGSYAFWDVSSG  266 (993)
T ss_pred             ccccccceeeeecCCCcc-eeeeeee-eeehhcccccchhhcccc-------cccCccCCceEEEEEecCCEEeeecCCC
Confidence            344555555554444433 3444555 667765544444334321       1112889999999999999999999997


Q ss_pred             CC
Q 015650          336 SG  337 (403)
Q Consensus       336 ~~  337 (403)
                      +.
T Consensus       267 ~~  268 (993)
T KOG1983|consen  267 KL  268 (993)
T ss_pred             ce
Confidence            54

>PHA02790 Kelch-like protein; Provisional

Probab=87.45  E-value=27  Score=33.21  Aligned_cols=170  Identities=11%  Similarity=0.040  Sum_probs=76.9

Q ss_pred             ceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      ..+..||..+++....-.  ....-.+++. -++.+.+.     ...+..||..+++-.. +..-..+....+...-++.
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~  364 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNV  364 (480)
T ss_pred             CeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCE
Confidence            457778877765332211  1111122222 34444442     1357888876543221 1111112222222223344


Q ss_pred             EEEEeeCCc--cCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650          229 LVLVCPGLQ--KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       229 ~~~~~~g~~--d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                      +|++ +|..  ...+..||.++..-.....-   ......+.  -+|++.+.|   |. +.+||.++.+-...-......
T Consensus       365 IYvi-GG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~-~e~ydp~~~~W~~~~~m~~~r  437 (480)
T PHA02790        365 IYVI-GGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RN-AEFYCESSNTWTLIDDPIYPR  437 (480)
T ss_pred             EEEe-cCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---Cc-eEEecCCCCcEeEcCCCCCCc
Confidence            4443 3422  23467788776554332211   11111222  366666666   35 778988766543221111011


Q ss_pred             ccEEEEEeCCCCCEEEEEeCC-----CcEEEEEeecCC
Q 015650          304 AEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~d-----g~v~iwd~~~~~  336 (403)
                      .....+.  -+|++.+.||.+     ..+..||..+++
T Consensus       438 ~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        438 DNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             cccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            1222222  367788888754     346677776654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.44  E-value=22  Score=32.31  Aligned_cols=195  Identities=15%  Similarity=0.100  Sum_probs=96.2

Q ss_pred             CCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec
Q 015650           95 QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (403)
Q Consensus        95 ~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~  174 (403)
                      -+|+.++...++.|.-.|.++...+....+. .....+..-....++..+++.. +     +.++.+|..+|+.+....-
T Consensus        67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~i~~g~~-~-----g~~y~ld~~~G~~~W~~~~  139 (370)
T COG1520          67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGKIYVGSW-D-----GKLYALDASTGTLVWSRNV  139 (370)
T ss_pred             eCCeEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCeEEEecc-c-----ceEEEEECCCCcEEEEEec
Confidence            3455555434444555555555544322222 1011111111222666555444 4     7889999889999888874


Q ss_pred             CC--ceeEEEEecCceEEEe--cCeEEEEEcCCceeeeEeeccCC-Cce-eEEEeeCCCeEEEEeeCCccCeEEEEEccC
Q 015650          175 RS--EVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIAN-PKG-LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (403)
Q Consensus       175 ~~--~i~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~  248 (403)
                      ..  .+..-....++..+..  ++.+...|..+|+.+........ ... .-........+++...+. ++.+.-.|...
T Consensus       140 ~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~-~~~~~a~~~~~  218 (370)
T COG1520         140 GGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGY-DGILYALNAED  218 (370)
T ss_pred             CCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCC-cceEEEEEccC
Confidence            33  2333334445665553  68999999888888777544221 100 000012222333332110 44555566655


Q ss_pred             CceeEEeecCCceEE-----E-EE-----cCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          249 KRTKFIMAHDSRIAC-----F-AL-----TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       249 ~~~~~~~~~~~~i~~-----~-~~-----sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      +...--..+...+..     . .+     .-++ -++.++.++. +.-.|..+++.+-.+..
T Consensus       219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~-~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGK-LLCLDADTGELIWSFPA  278 (370)
T ss_pred             CcEeeeeeeecccCcccccccccccCceEEECC-cEEEEecCCe-EEEEEcCCCceEEEEec
Confidence            443222111111100     0 11     1122 2355667777 88888888888877764

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.30  E-value=36  Score=34.56  Aligned_cols=117  Identities=9%  Similarity=0.036  Sum_probs=74.1

Q ss_pred             CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC------CceeEEeecCC----------ceEEEEEcCCCCEEEEEe
Q 015650          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS------KRTKFIMAHDS----------RIACFALTQDGQLLATSS  277 (403)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~------~~~~~~~~~~~----------~i~~~~~sp~g~~l~s~~  277 (403)
                      ..+...++|+|.....+.+.  ...|...||++..      ........+.+          .-..+.|.++-+.|+.++
T Consensus       145 g~~~aDv~FnP~~~~q~AiV--D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~  222 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIV--DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN  222 (765)
T ss_pred             CCccceEEeccCccceEEEE--eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence            34556789998776655444  5789999999922      11111111122          224778988878887776


Q ss_pred             CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC--CCEEEEEeCCCcEEEEEeecCC
Q 015650          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d--~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ...  +.++|+++......+........|.++.-+++  +..++-.  ...|...++....
T Consensus       223 r~~--l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~~  279 (765)
T PF10214_consen  223 RSK--LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSSS  279 (765)
T ss_pred             CCc--eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCCC
Confidence            554  89999988766432322224568999999887  3333332  3578888888754

These proteins are found in fungi.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.08  E-value=8  Score=37.41  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=29.6

Q ss_pred             ceEEEEEcC----CCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          260 RIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       260 ~i~~~~~sp----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      ....++++.    +..+|++.+.|+. ||+||+.+++++.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATID  257 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEec
Confidence            345566666    7789999999999 9999999999977664

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.81  E-value=3.5  Score=23.04  Aligned_cols=31  Identities=19%  Similarity=0.318  Sum_probs=20.2

Q ss_pred             eecCCceEEEEEcCCCCEEEEEeCC---CcEEEEE
Q 015650          255 MAHDSRIACFALTQDGQLLATSSTK---GTLVRIF  286 (403)
Q Consensus       255 ~~~~~~i~~~~~sp~g~~l~s~~~d---g~~i~iw  286 (403)
                      ...........|+|||++|+..+..   |. -.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence            3345567788999999998866654   44 5555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=86.70  E-value=35  Score=34.07  Aligned_cols=109  Identities=9%  Similarity=0.137  Sum_probs=55.7

Q ss_pred             EEEEEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650           89 LHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (403)
Q Consensus        89 ~~i~~s~d~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~  166 (403)
                      .++-.+..|+..++|- .+| +-+=|..  .....+.+++-....+..++.+.+-..+.+-.       |.|+-|-++..
T Consensus       188 HSvfl~~kgqvY~cGhG~GGRlG~gdeq--~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~-------g~Vys~GlN~~  258 (1267)
T KOG0783|consen  188 HSVFLTEKGQVYVCGHGAGGRLGFGDEQ--YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKF-------GSVYSWGLNGS  258 (1267)
T ss_pred             eeeEecCCCcEEEeccCCCCccCcCccc--ccccccccccccccceEEEEeecceeEEEeec-------ceEEEeecCcc
Confidence            4555566778777775 333 3332211  11111223211334566666666666666654       78888877654


Q ss_pred             ceeEEEe-----------------cCCceeEEEEecCceEEEecCeEEEEEcCCcee
Q 015650          167 RCIGELS-----------------FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKL  206 (403)
Q Consensus       167 ~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~  206 (403)
                      ..+....                 ....|..++--....++..+..|+.|-++.|+.
T Consensus       259 hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~~VY~wGlN~GQl  315 (1267)
T KOG0783|consen  259 HQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDTDVYSWGLNNGQL  315 (1267)
T ss_pred             cccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecceEEEecccCcee
Confidence            3322111                 111233333322233333688899999988765

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.57  E-value=3.4  Score=37.59  Aligned_cols=159  Identities=16%  Similarity=0.156  Sum_probs=85.4

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce----eEE-EEeeeCCeEEEeeCCCCCCCC
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI----GVV-EMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      .+....+.|..+-..|||+.|..-+...+.|+++.+......+... ....    .|. .+..-..+..+...+.|    
T Consensus       215 ~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~-dspg~~~~~Vte~l~lL~Gg~SLLv~~~d----  289 (733)
T COG4590         215 LLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVD-DSPGDSRHQVTEQLYLLSGGFSLLVVHED----  289 (733)
T ss_pred             hcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhh-cCCCchHHHHHHHHHHHhCceeEEEEcCC----
Confidence            3555667788889999999998877778899988755433322222 1111    111 11112234445555555    


Q ss_pred             CceEEEE-ECCCC-c----eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650          155 LNKVMIW-DDHQS-R----CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       155 ~~~i~iw-d~~~~-~----~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (403)
                       |-|.-| |++.+ .    .++.++ ...++..+.-..+.+-++   -+|++..+.....+.+ .++........++++|
T Consensus       290 -G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~~~~~~~~~~~~~Sp  367 (733)
T COG4590         290 -GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LFERAYQAPQLVAMSP  367 (733)
T ss_pred             -CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-ehhhhhcCcceeeeCc
Confidence             777776 44333 1    122222 123333322222222222   3667776664333222 2222334567889999


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccCC
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYASK  249 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~~  249 (403)
                      .++.+++    .+.|.|+++.+++.
T Consensus       368 ~~~~Ll~----e~~gki~~~~l~Nr  388 (733)
T COG4590         368 NQAYLLS----EDQGKIRLAQLENR  388 (733)
T ss_pred             ccchhee----ecCCceEEEEecCC
Confidence            9886543    35688999988763

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.55  E-value=3.2  Score=40.16  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=26.7

Q ss_pred             cEEEEEeCC----CCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          305 EIYSLAFSS----NAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       305 ~v~~l~~s~----d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      .+..++.+.    +..+|++.+.|++||+||+.+++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL  253 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            456666666    6789999999999999999999973

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.23  E-value=4.2  Score=22.72  Aligned_cols=28  Identities=18%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             cccEEEEEeCCCCCEEEEEe-CC--CcEEEE
Q 015650          303 RAEIYSLAFSSNAQWLAVSS-DK--GTVHVF  330 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~-~d--g~v~iw  330 (403)
                      ...-....|||||++|+-++ .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            35677899999999887665 44  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.98  E-value=37  Score=33.40  Aligned_cols=193  Identities=13%  Similarity=0.147  Sum_probs=99.7

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEE--E--e-cCCceeEEE
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--L--S-FRSEVRSVK  182 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~--~--~-~~~~i~~~~  182 (403)
                      |+||++.. ..+ .+.+-  ....+..+.|+.+...++..- +     |++.+|++- |+.+..  .  + ....|..+.
T Consensus        66 I~If~~sG-~lL-~~~~w--~~~~lI~mgWs~~eeLI~v~k-~-----g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~  134 (829)
T KOG2280|consen   66 IRIFNISG-QLL-GRILW--KHGELIGMGWSDDEELICVQK-D-----GTVHVYGLL-GEFIESNSVGFESQMSDIVECR  134 (829)
T ss_pred             EEEEeccc-cch-HHHHh--cCCCeeeecccCCceEEEEec-c-----ceEEEeecc-hhhhcccccccccccCceeEEE
Confidence            77777642 222 12222  233889999998876655543 3     899999964 333333  1  1 344566666


Q ss_pred             EecCceEEE-ecCeEEEEEcCCceeeeEeec---cCCCceeEEEeeCCCeEEEEe-eCCccCeEEEEEccC--CceeEEe
Q 015650          183 LRRDRIIVV-LEQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGSLVLVC-PGLQKGQVRVEHYAS--KRTKFIM  255 (403)
Q Consensus       183 ~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~v~d~~~--~~~~~~~  255 (403)
                      +..+|..+. .+|++.+.+-.....++.++.   ..-...+..+...+....+.. ..-..+ ..++-...  .....+.
T Consensus       135 ~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~  213 (829)
T KOG2280|consen  135 FFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALS  213 (829)
T ss_pred             EecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccC
Confidence            666777666 567666554222222233322   111112222222222111111 000000 00111111  1112222


Q ss_pred             ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC
Q 015650          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (403)
Q Consensus       256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d  314 (403)
                      .....+..+..||+.++|+-=..+|. |.+-+....+++..+....| ..-..++|.-+
T Consensus       214 ~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgn  270 (829)
T KOG2280|consen  214 WPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDH-DPPKQMAWCGN  270 (829)
T ss_pred             CCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCC-CchHhceeecC
Confidence            22456788899999999999999999 99888877777777764323 22335666433

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=85.96  E-value=43  Score=34.07  Aligned_cols=112  Identities=14%  Similarity=0.125  Sum_probs=69.4

Q ss_pred             CCeEEEEEcCC-CCEEEEEcCCc-EEEEEcCCCe----eEEEEecc--------cCcceeEEEEeeeCCeEEEeeCCCCC
Q 015650           86 PTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR----EIFRRDFE--------RGGGIGVVEMLFRCNILALVGGGPDP  151 (403)
Q Consensus        86 ~~i~~i~~s~d-~~~l~~~~~~~-i~iw~~~~~~----~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (403)
                      .....++|+|. .+.||+-+..| ..||++....    ..+.....        .........+.|.++...++..++  
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r--  223 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR--  223 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC--
Confidence            35678999984 46788887666 9999992111    11111100        001123346677666555555554  


Q ss_pred             CCCCceEEEEECCCCceeE---EEecCCceeEEEEecC---ceEEEecCeEEEEEcCC
Q 015650          152 QYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRD---RIIVVLEQKIFVYNFAD  203 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~~~~~---~~~~~~~i~~~~~~~~---~~~~~~d~~i~i~d~~~  203 (403)
                          ..+.++|+++.....   .......|.++.-+++   ..++.+...|...++..
T Consensus       224 ----~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  224 ----SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             ----CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence                578999998876533   2225678899988887   34444788888888876

These proteins are found in fungi.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.79  E-value=23  Score=30.89  Aligned_cols=206  Identities=10%  Similarity=0.061  Sum_probs=107.6

Q ss_pred             CeEEEEEcCCCCEEEE--Ec----C----C---cEEEEEcCCCeeEEEEeccc---CcceeEEEEeeeC------CeEEE
Q 015650           87 TLLHISFNQDHGCFAA--GT----D----H---GFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRC------NILAL  144 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~--~~----~----~---~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~------~~~~~  144 (403)
                      .|..+...+++++-+.  |.    .    .   .|.+||+.+.+.+....+..   .....+..+....      ++.+.
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            4677888888876554  32    1    1   38899999988765555541   1234566666654      15666


Q ss_pred             eeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       145 ~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (403)
                      ++-...     +-|.++|+.+++..+.+.+.     +...|+...+..+|...-|.  .+            +..++.++
T Consensus        82 ItD~~~-----~glIV~dl~~~~s~Rv~~~~-----~~~~p~~~~~~i~g~~~~~~--dg------------~~gial~~  137 (287)
T PF03022_consen   82 ITDSGG-----PGLIVYDLATGKSWRVLHNS-----FSPDPDAGPFTIGGESFQWP--DG------------IFGIALSP  137 (287)
T ss_dssp             EEETTT-----CEEEEEETTTTEEEEEETCG-----CTTS-SSEEEEETTEEEEET--TS------------EEEEEE-T
T ss_pred             EeCCCc-----CcEEEEEccCCcEEEEecCC-----cceeccccceeccCceEecC--CC------------ccccccCC
Confidence            666655     78999999999876666531     11122222222333322221  22            33344433


Q ss_pred             ---CCCeEEEEeeCCccCeEEEEEccC-----C----------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650          225 ---GVGSLVLVCPGLQKGQVRVEHYAS-----K----------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (403)
Q Consensus       225 ---~~~~~~~~~~g~~d~~i~v~d~~~-----~----------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw  286 (403)
                         +++.+|+..-  ...  ++|.+.+     .          .++.+-........++++++|.++++--..+. |..|
T Consensus       138 ~~~d~r~LYf~~l--ss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a-I~~w  212 (287)
T PF03022_consen  138 ISPDGRWLYFHPL--SSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA-IGCW  212 (287)
T ss_dssp             TSTTS-EEEEEET--T-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE-EEEE
T ss_pred             CCCCccEEEEEeC--CCC--cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe-EEEE
Confidence               4444444331  111  2333322     1          11222222246678899999998888888888 9999


Q ss_pred             EcCCC---cEEEEEecCCC-cccEEEEEeCC--CCCEEEEE
Q 015650          287 NTLDG---TLLQEVRRGAD-RAEIYSLAFSS--NAQWLAVS  321 (403)
Q Consensus       287 d~~~~---~~~~~~~~~~~-~~~v~~l~~s~--d~~~l~s~  321 (403)
                      +....   +....+..... -..+.++.+.+  +|.+.+..
T Consensus       213 ~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  213 DPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             ETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             eCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            97651   12222322112 35778899988  76655544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.78  E-value=45  Score=34.23  Aligned_cols=171  Identities=14%  Similarity=0.180  Sum_probs=100.4

Q ss_pred             eEEEEECCCCceeEEEecCC-----ceeEEEEecCce--EEE--------------ecCeEEEEEcC-CceeeeEeeccC
Q 015650          157 KVMIWDDHQSRCIGELSFRS-----EVRSVKLRRDRI--IVV--------------LEQKIFVYNFA-DLKLLHQIETIA  214 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~~~~-----~i~~~~~~~~~~--~~~--------------~d~~i~i~d~~-~~~~~~~~~~~~  214 (403)
                      .|+++|..+++.+..+.+..     .+..+.|+....  +++              ++|.++.|++- .++.+.-+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            58899988888877776322     355566654322  222              14557888754 355444433223


Q ss_pred             CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE---EeecCCceEEEEEcCCCCEEEEEeCCCcEEE--EEEcC
Q 015650          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVR--IFNTL  289 (403)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~---~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~--iwd~~  289 (403)
                      -+....++.|..+. +++.   -...+++||+..+++..   ++.-...|+.+++  .+.+++.|..... +.  .|+-.
T Consensus       934 ~~~~v~Ai~~f~~~-~Lag---vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~ 1006 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGR-VLAG---VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE 1006 (1205)
T ss_pred             CCccceEEeccCCE-EEEe---cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC
Confidence            33345677777764 4443   34789999998865432   2223556777777  5667777765554 54  45533


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                       .+.+..+....-...|+++.+- |...+|.+..=|.+.+-.+....
T Consensus      1007 -~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1007 -DNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred             -CCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCcc
Confidence             3444455543344567777664 55677777676777666665433

>PHA02790 Kelch-like protein; Provisional

Probab=85.75  E-value=33  Score=32.60  Aligned_cols=181  Identities=15%  Similarity=0.038  Sum_probs=80.7

Q ss_pred             CCCEEEEEcC-C-----cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee
Q 015650           96 DHGCFAAGTD-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (403)
Q Consensus        96 d~~~l~~~~~-~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~  169 (403)
                      ++.++++|+. +     .+..||..+.+......+.  ....-.+.....+.+++++|...    ...+..||..+++-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~--~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~  344 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN--SPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWV  344 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC--chhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeEE
Confidence            4566677762 2     2566776655443323332  11111222333444555554321    146788887665432


Q ss_pred             EEEecCCce--eEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650          170 GELSFRSEV--RSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (403)
Q Consensus       170 ~~~~~~~~i--~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (403)
                      ..-.-..+.  .+++.. ++.+.+.      ...+..||.++.+-...-. -..+....+...-++.++++  |   |.+
T Consensus       345 ~~~~l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~IYv~--G---G~~  417 (480)
T PHA02790        345 NMPSLLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRLFLV--G---RNA  417 (480)
T ss_pred             ECCCCCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEEEEE--C---Cce
Confidence            211111111  122322 4444332      2357788876643221100 01111111222223444443  3   457


Q ss_pred             EEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcCCCc
Q 015650          242 RVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (403)
Q Consensus       242 ~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~  292 (403)
                      .+||.++..-..+..-   ......+.+  +|++.+.|+.+     .. |..||..+.+
T Consensus       418 e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~-ve~Yd~~~~~  473 (480)
T PHA02790        418 EFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDT-IEVYNNRTYS  473 (480)
T ss_pred             EEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccce-EEEEECCCCe
Confidence            7888877554433221   122222333  77777888754     23 6677765544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.37  E-value=11  Score=29.94  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=24.4

Q ss_pred             CceEEEEEcCCC------CEEEEEeCCCcEEEEEEcC
Q 015650          259 SRIACFALTQDG------QLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       259 ~~i~~~~~sp~g------~~l~s~~~dg~~i~iwd~~  289 (403)
                      ..+.+++|||-|      -+|++.+.++. |.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecC
Confidence            378999999944      47888888998 9999755

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=85.37  E-value=39  Score=33.10  Aligned_cols=235  Identities=16%  Similarity=0.139  Sum_probs=116.6

Q ss_pred             EEEcCCCCEEEEEcCCc-EEEEEcCC-CeeEEEEecccCcceeEEEEeeeC----CeEEEeeCCCCCCCCCceEEEEECC
Q 015650           91 ISFNQDHGCFAAGTDHG-FRIYNCDP-FREIFRRDFERGGGIGVVEMLFRC----NILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        91 i~~s~d~~~l~~~~~~~-i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      ..++|+...+-.|=.+. |.-|-+.+ .+.++...+.  ....|.++....    ...++++-...     +.-++-.+.
T Consensus        33 ~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~--pt~iV~~~dV~~~~~~~~~~~~glt~r-----Kk~~ll~i~  105 (670)
T PF10395_consen   33 DDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPIS--PTTIVECCDVLEKSDGKKLYCVGLTER-----KKFKLLLIE  105 (670)
T ss_pred             cccCCCCceEEEEeccchhhheecCCCcceeEeeccC--cCceEEEEEeEecCCCcEEEEEEEeeC-----CeeEEEEEE
Confidence            35677777776664443 55555432 2333333343  444455554321    23444443333     333333222


Q ss_pred             CC-----------ceeE--EEecCCceeEEEEecCceEEE---ecCeEEEEEcCCce--eeeEeecc-CCCceeEEEee-
Q 015650          165 QS-----------RCIG--ELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--LLHQIETI-ANPKGLCAVSQ-  224 (403)
Q Consensus       165 ~~-----------~~~~--~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~--~~~~~~~~-~~~~~~~~~~~-  224 (403)
                      .+           +...  .++....|.++.|..++..++   .+|.|.+||...+.  .+..+... ...+..-+|-. 
T Consensus       106 ~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~  185 (670)
T PF10395_consen  106 RKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVND  185 (670)
T ss_pred             ccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcc
Confidence            22           2222  334678899999997766555   59999999993322  11122111 11111001111 


Q ss_pred             ----C-CCeEEEEee-CCccCeEEEEEc--cCCceeEEe---ecCCceE--EEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 015650          225 ----G-VGSLVLVCP-GLQKGQVRVEHY--ASKRTKFIM---AHDSRIA--CFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (403)
Q Consensus       225 ----~-~~~~~~~~~-g~~d~~i~v~d~--~~~~~~~~~---~~~~~i~--~~~~sp~g~~l~s~~~dg~~i~iwd~~~~  291 (403)
                          + .+.+++++. .+..-..+++.+  ....+..+.   .+.....  .+++. +|.+..-  .++. |.+|++...
T Consensus       186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~-i~~ysip~f  261 (670)
T PF10395_consen  186 FELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKT-ISSYSIPNF  261 (670)
T ss_pred             cccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCE-EEEEEcCCc
Confidence                2 233444442 123345777777  333333332   2222222  23333 5654433  5667 999999998


Q ss_pred             cEEEEEecCC--Cc--ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          292 TLLQEVRRGA--DR--AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       292 ~~~~~~~~~~--~~--~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      +...++....  ..  ..+.++.--...+.|++  .++.|++.|+.-....
T Consensus       262 ~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siL  310 (670)
T PF10395_consen  262 QIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESIL  310 (670)
T ss_pred             eEEEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhh
Confidence            8877776431  11  13444433223445554  3678999999765543

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=85.36  E-value=38  Score=32.94  Aligned_cols=202  Identities=13%  Similarity=0.036  Sum_probs=103.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCC------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           87 TLLHISFNQDHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      .+-.++.+||.+++|.+-|.      ++++-|+.+++... ..+    ......++|.+++..+.-...+..-.+.+|..
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~-d~i----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~  204 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELP-DEI----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR  204 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccc-hhh----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence            46678889999999887532      18888888776542 112    12345566766554444333332211233333


Q ss_pred             EECCC--CceeEEEec--CCceeEEEEecCceEEE--e----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          161 WDDHQ--SRCIGELSF--RSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       161 wd~~~--~~~~~~~~~--~~~i~~~~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      -.+.+  ..-...++-  ..-...+.-+....+++  .    .+.+++.+.........+-.....-....+...++.++
T Consensus       205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~  284 (682)
T COG1770         205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFY  284 (682)
T ss_pred             EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEE
Confidence            33433  222222332  22223344444555555  1    34688888776433222111111111222333355555


Q ss_pred             EEeeCCccC-eEEEEEccC----CceeEEeecCCceEEEEEcCCCCEEEEEeCCCc--EEEEEEcCCCcEEE
Q 015650          231 LVCPGLQKG-QVRVEHYAS----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQ  295 (403)
Q Consensus       231 ~~~~g~~d~-~i~v~d~~~----~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~  295 (403)
                      +.+ . .+| ..+|+....    ..-+.+..|...+.--.|+--.++|+....++.  .|++++.++++...
T Consensus       285 i~s-N-~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~  354 (682)
T COG1770         285 ILS-N-ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG  354 (682)
T ss_pred             EEe-c-CCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee
Confidence            554 2 333 555554433    333556678777766666666677776665442  27888887766543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.17  E-value=25  Score=30.70  Aligned_cols=136  Identities=11%  Similarity=0.161  Sum_probs=80.0

Q ss_pred             eEEEEEcCCceeeeEeeccCC------CceeEEEeeCCC----eEEEEeeCCccCeEEEEEccCCceeEEee--------
Q 015650          195 KIFVYNFADLKLLHQIETIAN------PKGLCAVSQGVG----SLVLVCPGLQKGQVRVEHYASKRTKFIMA--------  256 (403)
Q Consensus       195 ~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~g~~d~~i~v~d~~~~~~~~~~~--------  256 (403)
                      +|.+||+.+++.++.+.-...      ....+.+.....    ..+.++ -...+-|.|+|+.+++...+..        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt-D~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT-DSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE-ETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe-CCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            688999999988877754322      233456655332    333333 2344689999998855433221        


Q ss_pred             ------------cCCceEEEEEcC---CCCEEEEEeCCCcEEEEEEcCCC--------------cEEEEEecCCCcccEE
Q 015650          257 ------------HDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLDG--------------TLLQEVRRGADRAEIY  307 (403)
Q Consensus       257 ------------~~~~i~~~~~sp---~g~~l~s~~~dg~~i~iwd~~~~--------------~~~~~~~~~~~~~~v~  307 (403)
                                  ....+..++.+|   +|+.|+.....+.  ++|.+.+.              +.++.+-.  ......
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~--k~~~s~  189 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGD--KGSQSD  189 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SEC
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceeccc--cCCCCc
Confidence                        122366777766   7778887776664  56654321              11222211  113556


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      .++.+++|.++++--..+.|..|+..+.
T Consensus       190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~  217 (287)
T PF03022_consen  190 GMAIDPNGNLYFTDVEQNAIGCWDPDGP  217 (287)
T ss_dssp             EEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred             eEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence            7888999988888889999999998863

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=84.99  E-value=29  Score=31.22  Aligned_cols=158  Identities=12%  Similarity=0.111  Sum_probs=82.3

Q ss_pred             CceeEEEEecCc-eEEEecCeEEEEEcCC-ceeeeEeeccCCC-------------ceeEEEeeCC------CeEEEEee
Q 015650          176 SEVRSVKLRRDR-IIVVLEQKIFVYNFAD-LKLLHQIETIANP-------------KGLCAVSQGV------GSLVLVCP  234 (403)
Q Consensus       176 ~~i~~~~~~~~~-~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~~  234 (403)
                      +....++|...+ .+++.|...-+|.+.- ++....+......             -..+-|.-..      +.++.+..
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~  194 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALE  194 (376)
T ss_pred             CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeec
Confidence            556678888876 6666787766666542 2211111111100             0112221111      12233335


Q ss_pred             CCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCcE--EEEEecCCCcccEEEEEe
Q 015650          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTL--LQEVRRGADRAEIYSLAF  311 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~  311 (403)
                      |..+|.+.-||..++..+.+...-.-.+.++.|||+.+++.+-.-- ...+.| ++..+.  ...+..+ -.+.--.|..
T Consensus       195 g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~-LPG~PDNIR~  272 (376)
T KOG1520|consen  195 GDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEG-LPGYPDNIRR  272 (376)
T ss_pred             CCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhc-CCCCCcceeE
Confidence            6677888889988888777665555568899999999887654322 314566 332111  0111110 1233345667


Q ss_pred             CCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          312 SSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       312 s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +++|.+.+.-...... +|++-...
T Consensus       273 ~~~G~fWVal~~~~~~-~~~~~~~~  296 (376)
T KOG1520|consen  273 DSTGHFWVALHSKRST-LWRLLMKY  296 (376)
T ss_pred             CCCCCEEEEEecccch-HHHhhhcC
Confidence            7888765544322222 66665443

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=84.90  E-value=26  Score=30.76  Aligned_cols=72  Identities=19%  Similarity=0.367  Sum_probs=52.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc----cEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA----EIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~----~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      -|++|...++|.+|++.-.-.. |.+.|-++|+.+-.+.+.. .+    .-...+|-.|-+++-.+..++.|.|||=.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~-~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKR-NSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCC-CCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            3777888899999998888778 9999999999988886531 11    11224555566666566778889998873

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.60  E-value=7.1  Score=31.06  Aligned_cols=31  Identities=26%  Similarity=0.386  Sum_probs=26.2

Q ss_pred             cEEEEEeCCCCC------EEEEEeCCCcEEEEEeecC
Q 015650          305 EIYSLAFSSNAQ------WLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       305 ~v~~l~~s~d~~------~l~s~~~dg~v~iwd~~~~  335 (403)
                      .|.+++|||-|-      +|++.+.+|.|.||.-...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            788999999543      7889999999999987754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.59  E-value=0.15  Score=46.21  Aligned_cols=140  Identities=11%  Similarity=0.100  Sum_probs=87.3

Q ss_pred             EEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee
Q 015650          180 SVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA  256 (403)
Q Consensus       180 ~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~  256 (403)
                      ...|.+.+.-++   .+..+..||- .++.+.... ..+..-.++|..+++.+.+++  ...+.+.+||+.+....++..
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlA--ek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLA--EKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhh--hcCCCeeechhhhhhHHHHhc
Confidence            345566554444   4667788883 344333332 122233456666666655554  577899999998865554432


Q ss_pred             c-CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          257 H-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       257 ~-~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                      . ...-.-+.|++.+..++.+...|. +.|++..+.+.+.  ..+.|...++++++.+.+..+ .++.|..+
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn-~viynhgtsR~ii--v~Gkh~RRgtq~av~lEd~vi-l~dcd~~L  182 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGN-IVIYNHGTSRRII--VMGKHQRRGTQIAVTLEDYVI-LCDCDNTL  182 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccc-eEEEeccchhhhh--hhcccccceeEEEecccceee-ecCcHHHH
Confidence            2 111222689999999999989999 9999876655443  333377889999999876544 44444443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.59  E-value=6.9  Score=27.06  Aligned_cols=44  Identities=18%  Similarity=0.166  Sum_probs=31.7

Q ss_pred             CCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC
Q 015650          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~  278 (403)
                      +..+|.+..||..+++...+...-.-.+.+++++|+.+|+.+-.
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            34568899999999988777665666799999999997766543

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=84.56  E-value=52  Score=33.85  Aligned_cols=137  Identities=14%  Similarity=0.085  Sum_probs=76.5

Q ss_pred             EEEEEcCCceeeeEeeccCC----CceeEEEeeCCCeEEEEeeCC----------ccCeEEEEEccC-CceeEEeecCCc
Q 015650          196 IFVYNFADLKLLHQIETIAN----PKGLCAVSQGVGSLVLVCPGL----------QKGQVRVEHYAS-KRTKFIMAHDSR  260 (403)
Q Consensus       196 i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~----------~d~~i~v~d~~~-~~~~~~~~~~~~  260 (403)
                      |+++|...++.+..+....+    .+..+.|+......++++.+.          .+|.++.|++-. +....+ .|...
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel-lh~T~  933 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL-LHKTE  933 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeee-eeccC
Confidence            67777666655544432222    233445555544423332221          134466665433 221111 23222


Q ss_pred             eE--EEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          261 IA--CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       261 i~--~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      +.  -.++.|-..++++|-. .. +++||+...++++..+...-...|..+++  .+..+++|.....|.++..+...+
T Consensus       934 ~~~~v~Ai~~f~~~~LagvG-~~-l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRVLAGVG-RF-LRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred             CCccceEEeccCCEEEEecc-cE-EEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCC
Confidence            22  2355665556665543 45 99999988887776665434567888887  567888888777777777766553

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.56  E-value=47  Score=33.31  Aligned_cols=76  Identities=17%  Similarity=0.135  Sum_probs=51.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEcCC----------C-eeEEEEec-------ccCcceeEEEEeeeCCe---EEE
Q 015650           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDP----------F-REIFRRDF-------ERGGGIGVVEMLFRCNI---LAL  144 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~----------~-~~~~~~~~-------~~~~~~~v~~~~~~~~~---~~~  144 (403)
                      -.|..|.++|+|++||..+..+|.|-.+..          + .....+++       ..+....|..+.|+|.+   ..+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            378999999999999999988877666521          1 11111222       12455688899998753   344


Q ss_pred             eeCCCCCCCCCceEEEEECCCC
Q 015650          145 VGGGPDPQYPLNKVMIWDDHQS  166 (403)
Q Consensus       145 ~s~~~d~~~~~~~i~iwd~~~~  166 (403)
                      +.-..|     +.+++||+...
T Consensus       165 ~vLtsd-----n~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSD-----NTLRLYDISDP  181 (717)
T ss_pred             EEEecC-----CEEEEEecCCC
Confidence            444444     89999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.48  E-value=45  Score=33.07  Aligned_cols=144  Identities=10%  Similarity=0.103  Sum_probs=81.6

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeEEE----Eecc-----------------cCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           97 HGCFAAGTDHGFRIYNCDPFREIFR----RDFE-----------------RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~~~----~~~~-----------------~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ..+|+++..+.|.||+.+.......    ..+.                 ..|......+..-.+...|+.+.+|     
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~Dd-----  123 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDD-----  123 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecC-----
Confidence            7788888888899999864433210    0000                 1122222233333355566667777     


Q ss_pred             ceEEEEECCC-------C-------------ceeEEEecCCceeEEEEe--cCceEEE-ecC----eEEEEEcCCceeee
Q 015650          156 NKVMIWDDHQ-------S-------------RCIGELSFRSEVRSVKLR--RDRIIVV-LEQ----KIFVYNFADLKLLH  208 (403)
Q Consensus       156 ~~i~iwd~~~-------~-------------~~~~~~~~~~~i~~~~~~--~~~~~~~-~d~----~i~i~d~~~~~~~~  208 (403)
                      |.|.+|.+++       .             ++...+.....+++++++  ...++++ +++    +|..+.+...+...
T Consensus       124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~  203 (717)
T PF08728_consen  124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH  203 (717)
T ss_pred             CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence            9999997521       0             012223356688999998  7778877 443    34445553222111


Q ss_pred             E-eeccCCCceeEEEeeCC---Ce-EEEEeeCCccCeEEEEEc
Q 015650          209 Q-IETIANPKGLCAVSQGV---GS-LVLVCPGLQKGQVRVEHY  246 (403)
Q Consensus       209 ~-~~~~~~~~~~~~~~~~~---~~-~~~~~~g~~d~~i~v~d~  246 (403)
                      . -..+.+.|..++|-++.   .+ ..+++ .+-.|.+.+|++
T Consensus       204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a-~dI~G~v~~~~I  245 (717)
T PF08728_consen  204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVA-TDISGEVWTFKI  245 (717)
T ss_pred             ccccccccCCCeeEeecCCCCCccceEEEE-EeccCcEEEEEE
Confidence            1 11356677888887755   22 23333 357788888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.30  E-value=44  Score=32.78  Aligned_cols=159  Identities=14%  Similarity=0.130  Sum_probs=84.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEee--------eCCeEEEeeC--CCCCC
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--------RCNILALVGG--GPDPQ  152 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~s~--~~d~~  152 (403)
                      -.+.|-.|.|.++++.+++...+| |.+|+...........+...+...+.--.|        ..+..++++.  +..  
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k--  205 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK--  205 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc--
Confidence            366899999999998888887666 999998322221111222112221111122        1234444444  222  


Q ss_pred             CCCceEEEEEC-CCCceeEEEe----cCCceeEEEEe-cCceEEE-ecCeEEEEEcCCceeeeEeecc--CCC--ceeEE
Q 015650          153 YPLNKVMIWDD-HQSRCIGELS----FRSEVRSVKLR-RDRIIVV-LEQKIFVYNFADLKLLHQIETI--ANP--KGLCA  221 (403)
Q Consensus       153 ~~~~~i~iwd~-~~~~~~~~~~----~~~~i~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~--~~~--~~~~~  221 (403)
                         -..+++.+ .....+.++.    +........|. .+|.+.. .+++|.+|++...+..+++...  -..  -..+.
T Consensus       206 ---~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vS  282 (670)
T PF10395_consen  206 ---LSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVS  282 (670)
T ss_pred             ---EEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceE
Confidence               45677776 1222233332    22222222222 2555544 7889999999887776666432  111  23445


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccCCc
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~~~  250 (403)
                      +.+-....++.+   .+..|++.|+.-..
T Consensus       283 l~~~s~nRvLLs---~~nkIyLld~~~~s  308 (670)
T PF10395_consen  283 LKPPSPNRVLLS---VNNKIYLLDLKFES  308 (670)
T ss_pred             eecCCCCeEEEE---cCCEEEEEeehhhh
Confidence            544333444554   56899999987633

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=84.11  E-value=24  Score=29.83  Aligned_cols=137  Identities=9%  Similarity=0.039  Sum_probs=75.2

Q ss_pred             eEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe----c--CeEEEEEcCC--ceee-eEe---eccCCCceeEEE
Q 015650          157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL----E--QKIFVYNFAD--LKLL-HQI---ETIANPKGLCAV  222 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~----d--~~i~i~d~~~--~~~~-~~~---~~~~~~~~~~~~  222 (403)
                      .-.+||+.+++.. .+.  ...-..+-.+.+||+++..    +  ..+++++..+  ..+- .+.   -....+......
T Consensus        47 ~s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   47 HSVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            3568888877542 233  2223334467789998883    2  3588888644  0111 000   012334445556


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccC--CceeEE---ee-----cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFI---MA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~---~~-----~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (403)
                      -+|++  +++.+|.......+|.-..  .....+   ..     ....---+...|+|++++.+..+.   .|||..+.+
T Consensus       126 L~DG~--vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s---~i~d~~~n~  200 (243)
T PF07250_consen  126 LPDGR--VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS---IIYDYKTNT  200 (243)
T ss_pred             CCCCC--EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc---EEEeCCCCe
Confidence            66776  4444566655666666432  111111   10     011112456689999998887654   588988887


Q ss_pred             EEEEEec
Q 015650          293 LLQEVRR  299 (403)
Q Consensus       293 ~~~~~~~  299 (403)
                      .++.+..
T Consensus       201 v~~~lP~  207 (243)
T PF07250_consen  201 VVRTLPD  207 (243)
T ss_pred             EEeeCCC
Confidence            7776654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.64  E-value=27  Score=29.88  Aligned_cols=194  Identities=11%  Similarity=0.001  Sum_probs=114.1

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEecC--eEEEEEcCCceee
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLL  207 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~  207 (403)
                      .-..++..+|+...+++...     +.|--.|..+|+....-- ....-..|..-||+..-+.|.  -|.-.|-++.+. 
T Consensus        63 ap~dvapapdG~VWft~qg~-----gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev-  136 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGT-----GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV-  136 (353)
T ss_pred             CccccccCCCCceEEecCcc-----ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccce-
Confidence            33456667777666666655     777777888887554322 455667788889887666544  455566555432 


Q ss_pred             eEee----ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee-cCCceEEEEEcCCCCEEEEEeCCCcE
Q 015650          208 HQIE----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTL  282 (403)
Q Consensus       208 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~s~~~dg~~  282 (403)
                      ..|.    ..........|.+.+.-.+.   + ..|.---.|.....+..+.. ....-+.|+..|||..-++.-.+.. 
T Consensus       137 t~f~lp~~~a~~nlet~vfD~~G~lWFt---~-q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagna-  211 (353)
T COG4257         137 TRFPLPLEHADANLETAVFDPWGNLWFT---G-QIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNA-  211 (353)
T ss_pred             EEeecccccCCCcccceeeCCCccEEEe---e-ccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccc-
Confidence            2221    12233445566666542222   2 12221122333333444432 3445678899999998887666776 


Q ss_pred             EEEEEcCCCcEEEEEecCC-CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          283 VRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      |-..|..++... .+.... .......+--+|.|+..++....+.++.||-.+..
T Consensus       212 iaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         212 IARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             eEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            777777766332 232211 12345566677889988888888888888876554

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=83.30  E-value=55  Score=33.18  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC---CCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE---PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (403)
                      ..|.++....-+.+++..-.||+|.++|-.+.+.+....   ............+..|               -.    .
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~f---------------p~----~  320 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHF---------------PC----I  320 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccc---------------cc----C
Confidence            567888888888899999999999999999987643330   0000111222222222               00    1


Q ss_pred             CCceEEEeccCCCEEEEEccCCC
Q 015650          381 GSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       381 ~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .....++|||.+.-++.-..||.
T Consensus       321 ~~~~~vafSPt~c~~v~~~~~~~  343 (753)
T PF11635_consen  321 QPPLHVAFSPTMCSLVQIDEDGK  343 (753)
T ss_pred             CCCceEEECcccceEEEEecCCC
Confidence            14556899999988888887763

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=82.80  E-value=40  Score=31.20  Aligned_cols=225  Identities=15%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             eCCeEEEeeCCCCCCCCCceEEEEECCCCc-----eeEEEecCCceeEEEEec-----CceEEE--ecCeEEEEEc----
Q 015650          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-----DRIIVV--LEQKIFVYNF----  201 (403)
Q Consensus       138 ~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-----~~~~~~~~~~i~~~~~~~-----~~~~~~--~d~~i~i~d~----  201 (403)
                      ..+...++.|+..     |.++||+...+.     .+.+.+...+|..+..-+     +...++  .-..+.+|.+    
T Consensus        34 ~~~~d~IivGS~~-----G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~  108 (418)
T PF14727_consen   34 PSGSDKIIVGSYS-----GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD  108 (418)
T ss_pred             CCCccEEEEeccc-----cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC


Q ss_pred             --------CCceeeeEeeccCCCceeEEEeeCCCe-EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCE
Q 015650          202 --------ADLKLLHQIETIANPKGLCAVSQGVGS-LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL  272 (403)
Q Consensus       202 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~  272 (403)
                              -..+.+.+..-.......+.-...+-. .-++|.-+.||.+.+|+-+.-....+...---...+.|.+.-..
T Consensus       109 g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDs  188 (418)
T PF14727_consen  109 GTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDS  188 (418)
T ss_pred             CCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCE


Q ss_pred             EEEEeCCCcEEEEEEc----------------------------------------------------------------
Q 015650          273 LATSSTKGTLVRIFNT----------------------------------------------------------------  288 (403)
Q Consensus       273 l~s~~~dg~~i~iwd~----------------------------------------------------------------  288 (403)
                      |++++.+.. |.-|..                                                                
T Consensus       189 fvt~sss~~-l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l  267 (418)
T PF14727_consen  189 FVTASSSWT-LECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCL  267 (418)
T ss_pred             EEEecCcee-EEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEE


Q ss_pred             -CCCcEEEEEecCCCcccEEEEEe--CCCCC---EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccc
Q 015650          289 -LDGTLLQEVRRGADRAEIYSLAF--SSNAQ---WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV  362 (403)
Q Consensus       289 -~~~~~~~~~~~~~~~~~v~~l~~--s~d~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (403)
                       .+|+.....+-............  ..++.   .++.++.++++.||.=.+-.                          
T Consensus       268 ~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~--------------------------  321 (418)
T PF14727_consen  268 KDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV--------------------------  321 (418)
T ss_pred             cCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE--------------------------


Q ss_pred             ccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          363 LPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                              |+.. +....-.+....|..-...|++-+.+|+
T Consensus       322 --------WsA~-l~~~PVal~v~~~~~~~G~IV~Ls~~G~  353 (418)
T PF14727_consen  322 --------WSAQ-LPHVPVALSVANFNGLKGLIVSLSDEGQ  353 (418)
T ss_pred             --------EecC-CCCCCEEEEecccCCCCceEEEEcCCCc

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=81.98  E-value=14  Score=25.51  Aligned_cols=40  Identities=8%  Similarity=0.050  Sum_probs=27.1

Q ss_pred             cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      +|.+..||..+++....+.+.. .-..++++++++.++++=
T Consensus        36 ~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   36 TGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             -EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEE
T ss_pred             CcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEe
Confidence            5788899999887654444433 347799999998776654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.73  E-value=41  Score=30.58  Aligned_cols=186  Identities=13%  Similarity=0.159  Sum_probs=100.2

Q ss_pred             CCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEec----CceE--E-E-ec-----CeEEEEEcC--C
Q 015650          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR----DRII--V-V-LE-----QKIFVYNFA--D  203 (403)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~----~~~~--~-~-~d-----~~i~i~d~~--~  203 (403)
                      |....+++....     +-+.+||+. |+.++.+. .+.++.+....    .+..  + + ++     ++|++|.+.  +
T Consensus        66 p~kSlIigTdK~-----~GL~VYdL~-Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~  138 (381)
T PF02333_consen   66 PAKSLIIGTDKK-----GGLYVYDLD-GKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT  138 (381)
T ss_dssp             GGG-EEEEEETT-----TEEEEEETT-S-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred             cccceEEEEeCC-----CCEEEEcCC-CcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence            344455555555     789999964 66666664 23444444322    2322  2 2 32     468899775  3


Q ss_pred             ceeeeEeec-------cCCCceeEEEeeC--CCeEEEEeeCCccCeEEEEEccC---Cc-----eeEEeecCCceEEEEE
Q 015650          204 LKLLHQIET-------IANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYAS---KR-----TKFIMAHDSRIACFAL  266 (403)
Q Consensus       204 ~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~v~d~~~---~~-----~~~~~~~~~~i~~~~~  266 (403)
                      +. +..+..       ....++.+|+..+  ...+++.. ...+|.+..|.+..   +.     ++.+. -...+..|..
T Consensus       139 g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v-~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVV  215 (381)
T PF02333_consen  139 GE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFV-NGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVV  215 (381)
T ss_dssp             TE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEE-EETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEE
T ss_pred             Cc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEE-ecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEE
Confidence            33 333321       1123455666432  23334333 34789888887753   22     23333 3457888999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEEcCC-----CcEEEEEecCCCcccEEEEEeC--CCCC-EEEEEe-CCCcEEEEEeecC
Q 015650          267 TQDGQLLATSSTKGTLVRIFNTLD-----GTLLQEVRRGADRAEIYSLAFS--SNAQ-WLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       267 sp~g~~l~s~~~dg~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~l~~s--~d~~-~l~s~~-~dg~v~iwd~~~~  335 (403)
                      .....+|+.+-++.. |+-|+.+-     ++.+....+......|-.|++-  .+++ ||++.+ .+++..||+.+..
T Consensus       216 DDe~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  216 DDETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             ETTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ecccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            888889999999988 88888752     2223222222233567777663  3443 555544 7778999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=80.84  E-value=52  Score=31.23  Aligned_cols=190  Identities=12%  Similarity=0.062  Sum_probs=85.3

Q ss_pred             CCeEEEeeC---CCCCCCCCceEEEEECCCCceeEEEec-CCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeecc
Q 015650          139 CNILALVGG---GPDPQYPLNKVMIWDDHQSRCIGELSF-RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETI  213 (403)
Q Consensus       139 ~~~~~~~s~---~~d~~~~~~~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~  213 (403)
                      .++++++..   ...     ....+.| ..|.....+.. ......+...++|.+++ ....++.+|+ .|+.+......
T Consensus       113 ~~gl~~~~~~~~~~~-----~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~-~G~v~~~~~l~  185 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSS-----SYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDL-LGKVIWEYDLP  185 (477)
T ss_dssp             TT-EEEEEETT--BE-----EEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-T-T--EEEEEE--
T ss_pred             CCcEEEEeCCCCCCC-----ceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcC-CCCEEEeeecC
Confidence            466777776   222     6677778 56666655552 22222267788999888 6788888887 46665555433


Q ss_pred             CCC---ceeEEEeeCCCeEEEEee------C--------------CccCeEEEEEccCCc--eeE----------E---e
Q 015650          214 ANP---KGLCAVSQGVGSLVLVCP------G--------------LQKGQVRVEHYASKR--TKF----------I---M  255 (403)
Q Consensus       214 ~~~---~~~~~~~~~~~~~~~~~~------g--------------~~d~~i~v~d~~~~~--~~~----------~---~  255 (403)
                      ...   -..+..-++|+-++++..      +              .....+..||+..-.  ...          .   .
T Consensus       186 ~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~  265 (477)
T PF05935_consen  186 GGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG  265 (477)
T ss_dssp             TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred             CcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence            221   234555566655444431      0              111233344443311  010          0   0


Q ss_pred             ecC--CceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCc-----ccEEE---------------EEeC
Q 015650          256 AHD--SRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADR-----AEIYS---------------LAFS  312 (403)
Q Consensus       256 ~~~--~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~-----~~v~~---------------l~~s  312 (403)
                      ...  -.+.++.+.+....|+.++. -.. |...|.++++..-.+-.+..-     ..+..               ..| 
T Consensus       266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~-  343 (477)
T PF05935_consen  266 GGRDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW-  343 (477)
T ss_dssp             TTSBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----
T ss_pred             CCCCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc-
Confidence            001  13788999994444444455 446 888888888876665432100     00110               111 


Q ss_pred             CCCCEEEEEeCCC---cEEEEEeecCCC
Q 015650          313 SNAQWLAVSSDKG---TVHVFNLKVNSG  337 (403)
Q Consensus       313 ~d~~~l~s~~~dg---~v~iwd~~~~~~  337 (403)
                      .-|++-+.--.+|   .|.+||=.....
T Consensus       344 ~~gQH~~~~~~~g~~~~l~vFDNg~~r~  371 (477)
T PF05935_consen  344 FWGQHTAHLIPDGPQGNLLVFDNGNGRG  371 (477)
T ss_dssp             -SS-EEEEE-TTS---SEEEEE--TTGG
T ss_pred             cccccceEEcCCCCeEEEEEEECCCCCC
Confidence            1255556666677   888888766553

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=80.40  E-value=40  Score=29.61  Aligned_cols=85  Identities=16%  Similarity=0.179  Sum_probs=55.7

Q ss_pred             CCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC--------------------CcEEEE
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK--------------------GTLVRI  285 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d--------------------g~~i~i  285 (403)
                      +..+++.-  +..|.+..+|.+++....+..-.+....+.|.  |+++++|-..                    .. |.|
T Consensus       212 dgrLwvld--sgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG-v~v  286 (335)
T TIGR03032       212 QGKLWLLN--SGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCG-VAV  286 (335)
T ss_pred             CCeEEEEE--CCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhccc-EEE
Confidence            34555553  34688888898877776665556677888886  8887765431                    23 777


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~  315 (403)
                      -|+++|..+..++-...-..+.+++.-|.-
T Consensus       287 idl~tG~vv~~l~feg~v~EifdV~vLPg~  316 (335)
T TIGR03032       287 IDLNSGDVVHWLRFEGVIEEIYDVAVLPGV  316 (335)
T ss_pred             EECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence            788888877766643233456666666653

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		4e-27
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		1e-26
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-04

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 132/292 (45%), Gaps = 35/292 (11%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P + I  ++    G I    ML R N +A V    +  
Sbjct: 22  FNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTI---RMLHRTNYIAFVSTKKELL 78
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           +      IWDD + + I  +   + V+ + L R+ I+V     I ++ F +    ++I  
Sbjct: 79  H------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNP--WNKITE 130
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSRIACFAL 266
                G+C  + G   L++       GQ+ V    +   +       + AH + +    L
Sbjct: 131 DIKFGGVCEFANG---LLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRL 187
Query: 267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326
            + G ++AT S  GTL+R+F T +G L++E RRG DR  I  + +S +   LAV SDK T
Sbjct: 188 NRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVVSDKWT 247
Query: 327 VHVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLPKYFSSEWSVAQFRL 378
           +HVF +  ++ + R   +                 +  KYF SEWS+  F+L
Sbjct: 248 LHVFEVFNDAENKRHVLK---------------DWINIKYFQSEWSICNFKL 284

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 134/304 (44%), Gaps = 48/304 (15%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P   I  ++      +  V ML R N +A V G  +  
Sbjct: 27  FNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKEV- 82
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
                V IWDD + + +  +   + V+ + L R+ I+V     I V+ F +     +I  
Sbjct: 83  -----VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP--WKRITD 135
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------RTKFIM 255
                G+C  S G   L++       GQ+ +    S                  +   I 
Sbjct: 136 DIRFGGVCEFSNG---LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192
Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
           AH + I    L +   ++AT S  GT++R+F T DG L++E RRG DRA++  + +S++ 
Sbjct: 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252
Query: 316 QWLAVSSDKGTVHVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLP-KYFSSEWSVA 374
             LAV SDK T+HVF +  +  + R                  +KG +  KYF SEWS+ 
Sbjct: 253 SKLAVVSDKWTLHVFEIFNDQDNKRHA----------------LKGWINMKYFQSEWSLC 296
Query: 375 QFRL 378
            F+L
Sbjct: 297 NFKL 300

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303
            H   K    + AH S +   A + DGQ +A++S   T V+++N  +G LLQ +      
Sbjct: 2   SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHS 57
Query: 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFN 331
           + ++ +AFS + Q +A +SD  TV ++N
Sbjct: 58  SSVWGVAFSPDGQTIASASDDKTVKLWN 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.59
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.45
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.35
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.31
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.28
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.28
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.28
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.2
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.17
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.14
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.14
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.11
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.09
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.08
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.06
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.05
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.04
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.02
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.01
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.01
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.97
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.88
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.83
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.81
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.77
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.72
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.7
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.67
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.67
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.61
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.6
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.59
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.58
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.58
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.57
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.55
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.54
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.52
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.5
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.49
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.47
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.46
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.45
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.4
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.38
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.26
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.26
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.23
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.22
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.2
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.16
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.01
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.83
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.81
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.77
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.75
3ott_A	758	Two-component system sensor histidine kinase; beta	97.74
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.71
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.69
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.69
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.67
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.61
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.59
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.5
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.49
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.48
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.48
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.33
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.29
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.06
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.88
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.87
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.78
3ott_A	758	Two-component system sensor histidine kinase; beta	96.7
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.69
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.63
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.51
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.39
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.32
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.29
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.17
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.13
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.87
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.71
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.55
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.45
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.42
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.3
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.2
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.15
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.88
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.7
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.7
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.34
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.63
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.35
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.75
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.67
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.78
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	89.45
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	89.34
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.81
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.09
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.55
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	81.21

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-43  Score=314.64  Aligned_cols=278  Identities=16%  Similarity=0.247  Sum_probs=245.2

Q ss_pred             cccCCCCCCeEEEEEcCC----CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQD----HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d----~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      ....+|.+.|++++|+|+    +.+|++|+ |+.|+||++..........+. +|...|.++.+++++..+++++.|   
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s~D---  101 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSSLD---  101 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEETT---
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEeCC---
Confidence            456789999999999875    57899998 555999999877766556676 899999999999999999999999   


Q ss_pred             CCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                        +.|++||+.+++.+..+. +...+.+++|+|++.+++   .|+.|++||+++++....+..+...+..++|+|+++. 
T Consensus       102 --~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-  178 (321)
T 3ow8_A          102 --AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY-  178 (321)
T ss_dssp             --SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE-
T ss_pred             --CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE-
Confidence              999999999999999888 788899999999999888   3899999999999998888888888999999999874 


Q ss_pred             EEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                       +++ |+.|+.|++||+++++ +..+.+|...|.+++|+|++++|++++.|+. |+|||+++++.+..+.+  |...|.+
T Consensus       179 -las-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~  253 (321)
T 3ow8_A          179 -LAS-GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLN  253 (321)
T ss_dssp             -EEE-EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             -EEE-EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEE
Confidence             443 4489999999998865 4567889999999999999999999999999 99999999999988886  7789999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEe
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF  388 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  388 (403)
                      ++|+|++++|++++.|++|++||+.+++.                                   +..+..|.+.|..++|
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-----------------------------------~~~~~~h~~~v~~v~~  298 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTC-----------------------------------VHTFFDHQDQVWGVKY  298 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEE-----------------------------------EEEECCCSSCEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEE-----------------------------------EEEEcCCCCcEEEEEE
Confidence            99999999999999999999999988763                                   3345667889999999


Q ss_pred             ccCCCEEEEEccCCC
Q 015650          389 GHQKNTVVILGMDGR  403 (403)
Q Consensus       389 s~d~~~l~~~~~dG~  403 (403)
                      +|++++|++++.||+
T Consensus       299 s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          299 NGNGSKIVSVGDDQE  313 (321)
T ss_dssp             CTTSSEEEEEETTCC
T ss_pred             CCCCCEEEEEeCCCe
Confidence            999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-43  Score=323.69  Aligned_cols=278  Identities=15%  Similarity=0.215  Sum_probs=248.1

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|...|++++|+|++.+|++|+. +.|+|||+.+++..  ..+. +|...|.++.|++++..+++++.|     
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~--~~l~-~h~~~V~~v~~~~~~~~l~sgs~D-----  171 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLK-GHTDSVQDISFDHSGKLLASCSAD-----  171 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEEe-ccCCcEEEEEEcCCCCEEEEEeCC-----
Confidence            34567899999999999999999999985 45999999887765  5666 789999999999999999999999     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      ++|++||+.+++++..+. |...|.+++|+|++.+++   .|++|++||+++++++..+.+|...+..+.+++++.  ++
T Consensus       172 ~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~--~l  249 (410)
T 1vyh_C          172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT--LI  249 (410)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS--EE
T ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC--EE
Confidence            999999999999998888 999999999999998877   499999999999999999999999999999998877  34


Q ss_pred             EeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCC--------------------CCEEEEEeCCCcEEEEEEcCC
Q 015650          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD--------------------GQLLATSSTKGTLVRIFNTLD  290 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~--------------------g~~l~s~~~dg~~i~iwd~~~  290 (403)
                      ++ ++.|+.|++||++++. ...+..|...|.+++|+|+                    |.+|++|+.|+. |++||+.+
T Consensus       250 ~s-~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~  327 (410)
T 1vyh_C          250 AS-CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVST  327 (410)
T ss_dssp             EE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTT
T ss_pred             EE-EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCC
Confidence            44 4489999999998855 4567889999999999996                    679999999999 99999999


Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeee
Q 015650          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSE  370 (403)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (403)
                      ++++..+.+  |...|++++|+|+|++|++++.||.|++||+.+++.                                 
T Consensus       328 ~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~---------------------------------  372 (410)
T 1vyh_C          328 GMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC---------------------------------  372 (410)
T ss_dssp             TEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC---------------------------------
T ss_pred             CceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce---------------------------------
Confidence            999999986  778999999999999999999999999999987763                                 


Q ss_pred             eeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          371 WSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       371 ~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                        +..+..|.+.|++++|+|++++|++|+.||+
T Consensus       373 --~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~  403 (410)
T 1vyh_C          373 --MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  403 (410)
T ss_dssp             --CEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             --EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence              3346778889999999999999999999984

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.6e-42  Score=310.45  Aligned_cols=280  Identities=13%  Similarity=0.129  Sum_probs=243.8

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|.+.|++++|+|++++|++|+.+ .|+|||+.+.+..  ..+. .|...+.++.|++++.++++++.|     
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~~d-----  118 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--HAIP-LRSSWVMTCAYAPSGNYVACGGLD-----  118 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--EEEE-CSSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--eEee-cCCccEEEEEECCCCCEEEEEeCC-----
Confidence            346788999999999999999999999854 5999999887765  4454 578889999999999999999999     


Q ss_pred             ceEEEEECCCCc----eeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      +.|++|++.+++    ....+. |...|.++.|++++.++.  .|++|++||+++++.+..+.+|...+..++++|++. 
T Consensus       119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-  197 (340)
T 1got_B          119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-  197 (340)
T ss_dssp             CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-
T ss_pred             CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-
Confidence            999999998763    444555 889999999999998766  499999999999999999999999999999999876 


Q ss_pred             EEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                       ++++ |+.|+.|++||++.+. ...+.+|...|.+++|+|++++|++|+.|+. |++||+++++.+..+....+...|.
T Consensus       198 -~l~s-g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~  274 (340)
T 1got_B          198 -LFVS-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             -EEEE-EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             -EEEE-EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceE
Confidence             3444 4589999999998854 5667889999999999999999999999999 9999999998888776433445799


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (403)
                      +++|+|+|++|++|+.||.|++||+.+++.                                   ...+.+|.+.|.+++
T Consensus       275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-----------------------------------~~~~~~h~~~v~~~~  319 (340)
T 1got_B          275 SVSFSKSGRLLLAGYDDFNCNVWDALKADR-----------------------------------AGVLAGHDNRVSCLG  319 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------------------EEEEECCSSCEEEEE
T ss_pred             EEEECCCCCEEEEECCCCeEEEEEcccCcE-----------------------------------eeEeecCCCcEEEEE
Confidence            999999999999999999999999987762                                   344678899999999


Q ss_pred             eccCCCEEEEEccCCC
Q 015650          388 FGHQKNTVVILGMDGR  403 (403)
Q Consensus       388 fs~d~~~l~~~~~dG~  403 (403)
                      |+|||++|++|+.||+
T Consensus       320 ~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          320 VTDDGMAVATGSWDSF  335 (340)
T ss_dssp             ECTTSSCEEEEETTSC
T ss_pred             EcCCCCEEEEEcCCcc
Confidence            9999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-42  Score=305.63  Aligned_cols=278  Identities=12%  Similarity=0.134  Sum_probs=238.4

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      .+.++.+|.+.|++++|+|++++|++|+. +.|+|||+.++...  ..+. .|...+.++.|++++..+++++.|     
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~s~d-----   76 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGSDD-----   76 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEETT-----
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--EEee-ccCCcEEEEEEeCCCCEEEEECCC-----
Confidence            34678899999999999999999999984 55999999887765  5565 688899999999999999999999     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||++++ .....+.+|...+..++|+|.+... 
T Consensus        77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~-  155 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST-  155 (304)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE-
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE-
Confidence            999999999999999998 999999999999998887   4999999999887 5566788899999999999954443 


Q ss_pred             EEeeCCccCeEEEEEccCCce--eEEeecCCceEEEEEcC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccE
Q 015650          231 LVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (403)
                      +++ |+.|+.|++||++....  .....|...+..+.|+|  ++.+|++++.|+. |++||+++++++..+.+  |...|
T Consensus       156 l~s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~--h~~~v  231 (304)
T 2ynn_A          156 FAS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNV  231 (304)
T ss_dssp             EEE-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEEC--CSSCE
T ss_pred             EEE-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCC--CCCCE
Confidence            343 45899999999987442  23345678899999987  7889999999999 99999999999999986  77899


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEE
Q 015650          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (403)
                      .+++|+|++++|++++.||+|++||+.+++.                                   ...+..+.+.+.++
T Consensus       232 ~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~-----------------------------------~~~~~~~~~~~~~~  276 (304)
T 2ynn_A          232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-----------------------------------EKTLNVGLERSWCI  276 (304)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------------------------------EEEECCSSSSEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCce-----------------------------------eeeccCCCccEEEE
Confidence            9999999999999999999999999998773                                   23355566788999


Q ss_pred             EeccCCC--EEEEEccCC
Q 015650          387 AFGHQKN--TVVILGMDG  402 (403)
Q Consensus       387 ~fs~d~~--~l~~~~~dG  402 (403)
                      +|+|++.  +|++|+.||
T Consensus       277 ~~~~~~~~~~~asg~~~g  294 (304)
T 2ynn_A          277 ATHPTGRKNYIASGFDNG  294 (304)
T ss_dssp             EECTTCGGGCEEEEETTE
T ss_pred             EECCCCCceEEEEecCCc
Confidence            9999875  688888886

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.1e-42  Score=309.32  Aligned_cols=282  Identities=12%  Similarity=0.104  Sum_probs=242.1

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|.+.|++++|+|++++|++|+.++ |+|||..+.+..  ..+. .+...+.++.|+|++..+++++.|     
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~--~~~~-~~~~~v~~~~~sp~g~~lasg~~d-----  127 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE--HAVT-MPCTWVMACAYAPSGCAIACGGLD-----  127 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEE-CSSSCCCEEEECTTSSEEEEESTT-----
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc--eEEe-cCCCCEEEEEECCCCCEEEEeeCC-----
Confidence            4467889999999999999999999999555 999999877665  3443 467789999999999999999999     


Q ss_pred             ceEEEEECCCC------ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeC
Q 015650          156 NKVMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (403)
Q Consensus       156 ~~i~iwd~~~~------~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  225 (403)
                      +.+++|++...      .....+. |...|.++.|++++..++   .|++|++||+++++.+..+.+|...+..++++++
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~  207 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS  207 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence            99999998643      2344555 899999999999987776   4999999999999999999999999999999987


Q ss_pred             CCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (403)
                      .+..++++ |+.|+.|++||++++. ...+..|...|.+++|+|++.+|++++.|+. |++||+++++.+..+..+.+..
T Consensus       208 ~~g~~l~s-gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~  285 (354)
T 2pbi_B          208 ETGNTFVS-GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIF  285 (354)
T ss_dssp             SSCCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCS
T ss_pred             CCCCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCccc
Confidence            55445555 4589999999999855 4567889999999999999999999999999 9999999998887776544445


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCce
Q 015650          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (403)
                      .+.+++|+|+|++|++++.|+.|++||+.+++.                                   +..+..|.+.|+
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-----------------------------------~~~l~~h~~~v~  330 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-----------------------------------VSILFGHENRVS  330 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-----------------------------------EEEECCCSSCEE
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-----------------------------------EEEEECCCCcEE
Confidence            799999999999999999999999999988763                                   334667888999


Q ss_pred             EEEeccCCCEEEEEccCCC
Q 015650          385 IVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       385 ~~~fs~d~~~l~~~~~dG~  403 (403)
                      +++|+|||++|++|+.||+
T Consensus       331 ~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          331 TLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             EEEECTTSSCEEEEETTSE
T ss_pred             EEEECCCCCEEEEEcCCCC
Confidence            9999999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.7e-42  Score=308.45  Aligned_cols=273  Identities=13%  Similarity=0.126  Sum_probs=220.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCC----------CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCC
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP----------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (403)
                      ..|...|.+++|+|||++|++++++++++|+...          ........+  .+...|.+++|++++. +++++.| 
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~-l~~~s~d-  102 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGV--QTEAGVADLTWVGERG-ILVASDS-  102 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEE--EESSCEEEEEEETTTE-EEEEETT-
T ss_pred             ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeee--ccCCCEEEEEEeCCCe-EEEEECC-
Confidence            3567789999999999999999988888887321          000000111  2446799999999975 4566677 


Q ss_pred             CCCCceEEEEECCCCceeEEEe-----cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEe
Q 015650          152 QYPLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  223 (403)
                          |.|+|||+.+++.+..+.     |...|.+++|+|++.+++   .|++|++||+++++++..+.+|...+..++|+
T Consensus       103 ----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~  178 (344)
T 4gqb_B          103 ----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS  178 (344)
T ss_dssp             ----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence                999999999987654432     889999999999999888   48999999999999999999999999999999


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEccCCcee-EE--eecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI--MAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~--~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      +++..+++.  ++.|+.|++||+++++.. .+  ..|...+.+++|+| ++++|++|+.|+. |+|||+++++++..+.+
T Consensus       179 ~~~~~~l~s--~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          179 PHKDSVFLS--CSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             SSCTTEEEE--EETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC
T ss_pred             CCCCCceee--eccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC
Confidence            998775443  358999999999986543 33  34566799999999 5678899999999 99999999999999986


Q ss_pred             CCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE
Q 015650          300 GADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL  378 (403)
Q Consensus       300 ~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (403)
                        |...|++++|+|++ ++|++|+.|++|+|||+++++                                    +.++..
T Consensus       256 --h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~------------------------------------~~~~~~  297 (344)
T 4gqb_B          256 --HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE------------------------------------LFRSQA  297 (344)
T ss_dssp             --CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE------------------------------------EEEECC
T ss_pred             --CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc------------------------------------EEEEcC
Confidence              77899999999998 579999999999999988765                                    233567


Q ss_pred             eCCCceEEEeccCCC-EEEEEccCCC
Q 015650          379 VEGSPYIVAFGHQKN-TVVILGMDGR  403 (403)
Q Consensus       379 ~~~~~~~~~fs~d~~-~l~~~~~dG~  403 (403)
                      |.+.|++++|+|+++ .|++++.||+
T Consensus       298 H~~~V~~v~~sp~~~~llas~s~D~~  323 (344)
T 4gqb_B          298 HRDFVRDATWSPLNHSLLTTVGWDHQ  323 (344)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             CCCCEEEEEEeCCCCeEEEEEcCCCe
Confidence            889999999999986 5678999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-40  Score=296.64  Aligned_cols=289  Identities=17%  Similarity=0.228  Sum_probs=233.2

Q ss_pred             cccCCCCC-CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           79 STSSSPPP-TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~-~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ..+.+|.. .|.+++|+|+|++||+|+ |+.|+||++.+........+..+|...|.+++|++++.+|++++.|     +
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~   83 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----A   83 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----C
Confidence            45678887 999999999999999998 5559999998776544444434799999999999999999999999     9


Q ss_pred             eEEEEECCCCc--eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc---eeeeEeeccCCCceeEEEeeCCC
Q 015650          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       157 ~i~iwd~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      .|++|++.++.  .+..+. |...|.+++|+|++.+++   .|++|++||++++   +++..+..|...+..++|+|+++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            99999988764  566676 899999999999999888   4899999999875   34566778889999999999987


Q ss_pred             eEEEEeeCCccCeEEEEEccCCc---eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC--------------
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--------------  290 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~---~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~--------------  290 (403)
                      .  +++ ++.|+.|++||.+...   ...+.+|...|.+++|+|+|++|++++.|+. |+|||...              
T Consensus       164 ~--l~s-~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          164 L--LAS-ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             C--EEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---C
T ss_pred             E--EEE-EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCC
Confidence            4  343 3489999999998754   3567889999999999999999999999999 99999632              


Q ss_pred             -CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeee
Q 015650          291 -GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS  369 (403)
Q Consensus       291 -~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (403)
                       .+++..+.+ .|...|.+++|+|++..|++++.|+.|++|+++........                       . +..
T Consensus       240 ~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-----------------------~-~~~  294 (345)
T 3fm0_A          240 SWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP-----------------------T-FSL  294 (345)
T ss_dssp             EEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC-----------------------C-EEE
T ss_pred             ccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee-----------------------e-EEE
Confidence             133444543 27789999999999999999999999999999876531110                       0 000


Q ss_pred             eeeeEEEEEeCCCceEEEeccCC-CEEEEEccCCC
Q 015650          370 EWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGR  403 (403)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~fs~d~-~~l~~~~~dG~  403 (403)
                        .......|.+.|++|+|+|++ ..|++|+.||+
T Consensus       295 --~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          295 --TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             --EEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             --EeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence              011123567899999999998 59999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-41  Score=304.81  Aligned_cols=275  Identities=14%  Similarity=0.165  Sum_probs=217.6

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC------C-cEEEEEcCCCeeEE--EEecccCcceeEEEEeeeCCeEEEeeCCCCC
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTD------H-GFRIYNCDPFREIF--RRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~------~-~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (403)
                      ...|...|++++|+|||++|++|++      + .|++|+...+....  .... .+|...|.+++|++++.+++++ .| 
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~s~d~~~l~~s-~d-  114 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG-VQTEAGVTDVAWVSEKGILVAS-DS-  114 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE-EECSSCEEEEEEETTTEEEEEE-TT-
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc-CCCCCCEEEEEEcCCCCEEEEE-CC-
Confidence            3569999999999999999999985      3 37888765443210  0111 1477789999999998877654 45 


Q ss_pred             CCCCceEEEEECCCCceeEE--E---ecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEe
Q 015650          152 QYPLNKVMIWDDHQSRCIGE--L---SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~~~~~~--~---~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  223 (403)
                          |+|+|||+.+++....  +   .|...|.+++|+|++.+++   .|++|++||+++++.+..+..|...+..++|+
T Consensus       115 ----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          115 ----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             ----SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ----CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence                8999999988865432  2   2788999999999999888   48999999999999999999999999999999


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEccCCceeE---EeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~---~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      ++++.+++..  +.|+.|++||+++++...   ...|...+.+++|+|+ +.+|++|+.|+. |++||+++++++..+..
T Consensus       191 ~~~~~~~~s~--~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~~  267 (357)
T 4g56_B          191 PGKDTIFLSC--GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSAV  267 (357)
T ss_dssp             TTCSSCEEEE--ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEECC
T ss_pred             cCCCceeeee--ccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEec
Confidence            9987655443  479999999998855332   3356778999999997 568899999999 99999999999988886


Q ss_pred             CCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE
Q 015650          300 GADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL  378 (403)
Q Consensus       300 ~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (403)
                        |...|++++|+|++ ++|++++.|++|+|||+++++.                                    .+...
T Consensus       268 --~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~------------------------------------~~~~~  309 (357)
T 4g56_B          268 --HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV------------------------------------FRDLS  309 (357)
T ss_dssp             --CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE------------------------------------EEECC
T ss_pred             --cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE------------------------------------eEECC
Confidence              67899999999987 5789999999999999987762                                    12346


Q ss_pred             eCCCceEEEecc-CCCEEEEEccCCC
Q 015650          379 VEGSPYIVAFGH-QKNTVVILGMDGR  403 (403)
Q Consensus       379 ~~~~~~~~~fs~-d~~~l~~~~~dG~  403 (403)
                      |.+.|++|+|+| |+++|++++.||+
T Consensus       310 H~~~V~~vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          310 HRDFVTGVAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             CCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence            788999999998 8999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.4e-39  Score=292.84  Aligned_cols=293  Identities=31%  Similarity=0.514  Sum_probs=234.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ....|.+.|++++|+|||++|++|++++++||++++.+.......   +...+..+.+..+..+++++ .+     +.|+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~d-----~~v~   84 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFVTG-VK-----EVVH   84 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEECS-ST-----TEEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEEEC-Cc-----cEEE
Confidence            347799999999999999999999999999999988766644333   33555666666665555444 44     7999


Q ss_pred             EEECCCCceeEEEecCCceeEEEEecCceEEEecCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEEEEee-CCc
Q 015650          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP-GLQ  237 (403)
Q Consensus       160 iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~  237 (403)
                      +||+.+++.+..+.+...|.++.++++...++.++.|++||+.++ +.+..+..   ....+++++  .  +++++ |..
T Consensus        85 iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~--~la~~sg~~  157 (355)
T 3vu4_A           85 IWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--G--LLVYSNEFN  157 (355)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--T--EEEEEESSC
T ss_pred             EEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--c--EEEEeCCCc
Confidence            999999999999998889999999999988889999999999988 77776654   445677777  2  34444 779


Q ss_pred             cCeEEEEEccCCc-----------------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650          238 KGQVRVEHYASKR-----------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       238 d~~i~v~d~~~~~-----------------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (403)
                      +|.|++||++.+.                 ...+.+|...|.+++|+|+|++|++|+.|++.|+|||+++++++..+..+
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            9999999999754                 67788999999999999999999999999933999999999999999843


Q ss_pred             CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC
Q 015650          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (403)
Q Consensus       301 ~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (403)
                      .|...|++++|+|+|++|++++.|++|++||++.+......             .+.  ..+++.++...|.+..+..+.
T Consensus       238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~~~~  302 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH-------------ALK--GWINMKYFQSEWSLCNFKLSV  302 (355)
T ss_dssp             TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE-------------ETT--TTEECCCCCCSSCSEEEECCC
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc-------------ccc--ceeeccccccccceeEEEecc
Confidence            47789999999999999999999999999999886532111             111  114667788889888877766


Q ss_pred             CC---ceEEEeccCCCEEEEEccCCC
Q 015650          381 GS---PYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       381 ~~---~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ..   ...++|++|+++|++++.||+
T Consensus       303 ~~~~~~~~~a~~~d~~~l~~~~~dg~  328 (355)
T 3vu4_A          303 DKHVRGCKIAWISESSLVVVWPHTRM  328 (355)
T ss_dssp             CTTCCCCEEEESSSSEEEEEETTTTE
T ss_pred             CCCCCceEEEEeCCCCEEEEEeCCCe
Confidence            43   477999999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.5e-40  Score=289.74  Aligned_cols=286  Identities=16%  Similarity=0.227  Sum_probs=232.9

Q ss_pred             ccccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCe---eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (403)
                      ...+.+|.+.|++++|+|++ ++|++|+ |+.|++|++....   ......+. +|...|.++.|++++.++++++.|  
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D--   86 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWD--   86 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT--
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCC--
Confidence            45688999999999999965 8899988 5559999986422   22335665 799999999999999999999999  


Q ss_pred             CCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC-
Q 015650          153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-  227 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-  227 (403)
                         ++|++||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||++ ++++..+.+|...+..+.+.|... 
T Consensus        87 ---~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           87 ---KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             ---SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred             ---CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence               999999999999999998 999999999999998888   48999999986 567778888999999999988542 


Q ss_pred             ---eEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650          228 ---SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       228 ---~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                         ..++++ ++.|+.|++||++... ...+.+|...|.+++|+|+|++|++++.|+. |+|||+.+++.+..+..   .
T Consensus       163 ~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~---~  237 (319)
T 3frx_A          163 DDDSVTIIS-AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA---Q  237 (319)
T ss_dssp             ---CCEEEE-EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---C
T ss_pred             CCCccEEEE-EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---C
Confidence               234444 4589999999998855 4557789999999999999999999999999 99999999999988873   4


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCc
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP  383 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (403)
                      ..|.+++|+|++.+|++++.+ .+++|+++.......+..+                  ..    .     ....++..+
T Consensus       238 ~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~------------------~~----~-----~~~~~~~~v  289 (319)
T 3frx_A          238 DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE------------------FA----G-----YSKAAEPHA  289 (319)
T ss_dssp             SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCC------------------CT----T-----CCGGGCCCE
T ss_pred             CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc------------------cc----c-----cccCcCcce
Confidence            689999999999999988755 5999999876521111000                  00    0     011234567


Q ss_pred             eEEEeccCCCEEEEEccCCC
Q 015650          384 YIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       384 ~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ..++|+|||++|++|+.||+
T Consensus       290 ~~~~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          290 VSLAWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             EEEEECTTSSEEEEEETTSC
T ss_pred             eEEEECCCCCEEEEeecCce
Confidence            88999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.7e-41  Score=304.12  Aligned_cols=288  Identities=15%  Similarity=0.164  Sum_probs=234.3

Q ss_pred             CCCCccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650           74 PSPAESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (403)
Q Consensus        74 ~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (403)
                      ......++.+|.+.|++++|+|++++|++|+.+ .|+|||+.+.+..  ..+. .|...+.+++|++++..+++++.|  
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~-~h~~~v~~~~~s~~g~~las~~~d--  129 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--HAIK-LHCPWVMECAFAPNGQSVACGGLD--  129 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--EEEE-CCCTTCCCCEECTTSSEEEECCSS--
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--eEEe-cCCCCEEEEEECCCCCEEEEeeCC--
Confidence            334456789999999999999999999999854 5999999887765  4555 688889999999999999999999  


Q ss_pred             CCCceEEEEECCCCc-------eeEEEe-cCCceeEEEEecCc-eEEE---ecCeEEEEEcCCceeeeEe-----eccCC
Q 015650          153 YPLNKVMIWDDHQSR-------CIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQI-----ETIAN  215 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~-------~~~~~~-~~~~i~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~-----~~~~~  215 (403)
                         +.+++|++.+..       ....+. |...|.++.|.|++ ..++   .|++|++||+++++.+..+     .+|..
T Consensus       130 ---~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          130 ---SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             ---SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             ---CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence               999999986532       233455 88899999999964 3343   4999999999999888777     45777


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (403)
                      .+..+++++.+..+ +++ |+.|+.|++||++.  .....+.+|...|.+++|+|++++|++|+.|++ |++||+++++.
T Consensus       207 ~v~~~~~~~~~~~~-l~s-gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~  283 (380)
T 3iz6_a          207 DVLSLSINSLNANM-FIS-GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQ  283 (380)
T ss_dssp             CEEEEEECSSSCCE-EEE-EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEE
T ss_pred             CeEEEEeecCCCCE-EEE-EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcE
Confidence            78888887744433 343 45899999999974  456778899999999999999999999999999 99999999999


Q ss_pred             EEEEecCCC-----cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceee
Q 015650          294 LQEVRRGAD-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS  368 (403)
Q Consensus       294 ~~~~~~~~~-----~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (403)
                      +..+..+..     ...|++++|+|+|++|++|+.||.|++||+.+++....+.                          
T Consensus       284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--------------------------  337 (380)
T 3iz6_a          284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG--------------------------  337 (380)
T ss_dssp             EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC--------------------------
T ss_pred             EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe--------------------------
Confidence            888765321     1248999999999999999999999999998776311000                          


Q ss_pred             eeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          369 SEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                           .....|.+.|++++|+|||++|++|+.||+
T Consensus       338 -----~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          338 -----TLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             -----CSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             -----cccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence                 001356788999999999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.3e-39  Score=284.22  Aligned_cols=280  Identities=14%  Similarity=0.253  Sum_probs=237.6

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|...|++++|+|++++|++|+. +.|+||++.+++..  ..+. +|...|.++.|++++..+++++.|     
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-----   86 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS-GHKLGISDVAWSSDSNLLVSASDD-----   86 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--hhhc-cCCCceEEEEEcCCCCEEEEECCC-----
Confidence            34567899999999999999999999984 55999999877654  5565 788999999999999999999999     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      +.|++||+.+++.+..+. |...|.++.|+|++.+++   .|+.|++||+++++.+..+..|...+..++++++++.  +
T Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l  164 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--I  164 (312)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE--E
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCE--E
Confidence            999999999999999998 899999999999998888   4899999999999999999999999999999998874  3


Q ss_pred             EeeCCccCeEEEEEccCCcee-EE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc-EEE
Q 015650          232 VCPGLQKGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE-IYS  308 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~-~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~-v~~  308 (403)
                      ++ ++.|+.|++||++++... .+ ..+...+.+++|+|++++|++++.|+. |++||+.+++++..+..+..... +..
T Consensus       165 ~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~  242 (312)
T 4ery_A          165 VS-SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFA  242 (312)
T ss_dssp             EE-EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred             EE-EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEE
Confidence            33 348999999999986543 33 356678999999999999999999999 99999999999988886432222 333


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEe
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF  388 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  388 (403)
                      ....+++.+|++|+.||.|++||+.+++.                                   +..+..|.+.+..++|
T Consensus       243 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-----------------------------------~~~~~~h~~~v~~~~~  287 (312)
T 4ery_A          243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-----------------------------------VQKLQGHTDVVISTAC  287 (312)
T ss_dssp             EEECSSSCEEEECCTTSCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEEE
T ss_pred             EEEeCCCcEEEEECCCCEEEEEECCCchh-----------------------------------hhhhhccCCcEEEEee
Confidence            33447889999999999999999988763                                   3446778889999999


Q ss_pred             ccCCCEEEEEc--cCCC
Q 015650          389 GHQKNTVVILG--MDGR  403 (403)
Q Consensus       389 s~d~~~l~~~~--~dG~  403 (403)
                      +|+++.|++++  .||+
T Consensus       288 ~p~~~~l~s~~~~~d~~  304 (312)
T 4ery_A          288 HPTENIIASAALENDKT  304 (312)
T ss_dssp             CSSSSEEEEEECTTTCC
T ss_pred             cCcCCceEEEEccCCcc
Confidence            99999999987  5764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.5e-39  Score=288.47  Aligned_cols=289  Identities=17%  Similarity=0.175  Sum_probs=228.5

Q ss_pred             ccccCCCCCCeEEEEE-----cC-CCCEEEEEc-CCcEEEEEcCCCe-----eEEEEecccCcceeEEEEeeeCCeEEEe
Q 015650           78 ESTSSSPPPTLLHISF-----NQ-DHGCFAAGT-DHGFRIYNCDPFR-----EIFRRDFERGGGIGVVEMLFRCNILALV  145 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~-----s~-d~~~l~~~~-~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~  145 (403)
                      ...+.+|.+.|++++|     ++ ++++|++|+ |+.|+||++...+     ......+. +|...|.++.|++++.+++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEE
Confidence            3568899999999999     76 999999998 4559999987542     23335565 7999999999999999999


Q ss_pred             eCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEee---ccCCCce
Q 015650          146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE---TIANPKG  218 (403)
Q Consensus       146 s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~---~~~~~~~  218 (403)
                      +++.|     ++|++||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||+... ......   .|...+.
T Consensus        93 s~s~D-----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           93 SSSWD-----KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EEETT-----SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred             EEcCC-----CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence            99999     999999999999999988 999999999999998887   4899999999743 333332   5777889


Q ss_pred             eEEEeeCCCe--------EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC-
Q 015650          219 LCAVSQGVGS--------LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-  289 (403)
Q Consensus       219 ~~~~~~~~~~--------~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~-  289 (403)
                      .++++|++..        .++++ ++.|+.|++||........+.+|...|.+++|+|+|++|++|+.|+. |++||+. 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~  244 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILN  244 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSC
T ss_pred             eeeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCC
Confidence            9999987631        24454 45899999999766667778899999999999999999999999999 9999994 


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC--CCCCCCCCCCCCccccccccccccccee
Q 015650          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA--RSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (403)
                      .......+.   +...|.+++|+|++++|+++ .|+.|++|++.+++...  .+...                 .+    
T Consensus       245 ~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~-----------------~~----  299 (343)
T 2xzm_R          245 LTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAE-----------------PI----  299 (343)
T ss_dssp             CSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCC-----------------SG----
T ss_pred             Ccccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecC-----------------cc----
Confidence            444444554   34579999999999988755 57789999998876432  11100                 00    


Q ss_pred             eeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                         ........|...+.+++|+|+|++|++|+.||+
T Consensus       300 ---~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~  332 (343)
T 2xzm_R          300 ---TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV  332 (343)
T ss_dssp             ---GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred             ---hhhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence               000001245667899999999999999999984

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.1e-39  Score=292.96  Aligned_cols=272  Identities=16%  Similarity=0.188  Sum_probs=227.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEeccc-----------------CcceeEEEEeeeCCeEEEe
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER-----------------GGGIGVVEMLFRCNILALV  145 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~  145 (403)
                      +|...|.+++|+|||++||+|+++.++||++.+++...  .+..                 .+...|.+++|++++..++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEE--EECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEE--EecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            59999999999999999999998889999998876553  3321                 1122489999999999999


Q ss_pred             eCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEE
Q 015650          146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA  221 (403)
Q Consensus       146 s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  221 (403)
                      +++.|     +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||+++++....+. +...+..++
T Consensus       140 s~~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~  213 (393)
T 1erj_A          140 TGAED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA  213 (393)
T ss_dssp             EEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred             EEcCC-----CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence            99999     999999999999998888 999999999999998887   48999999999998877775 456788899


Q ss_pred             Eee-CCCeEEEEeeCCccCeEEEEEccCCcee-EE-------eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-
Q 015650          222 VSQ-GVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-  291 (403)
Q Consensus       222 ~~~-~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~-------~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-  291 (403)
                      ++| +++  ++++ |+.|+.|++||++++... .+       .+|...|.+++|+|+|++|++++.|+. |++||+++. 
T Consensus       214 ~~~~~~~--~l~~-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~  289 (393)
T 1erj_A          214 VSPGDGK--YIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNAN  289 (393)
T ss_dssp             ECSTTCC--EEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----
T ss_pred             EECCCCC--EEEE-EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCC
Confidence            998 444  3343 458999999999886543 23       478999999999999999999999999 999999763 


Q ss_pred             -----------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccc
Q 015650          292 -----------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK  360 (403)
Q Consensus       292 -----------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (403)
                                 .+...+.+  |...|.+++|+|++++|++++.|+.|++||+.+++.                       
T Consensus       290 ~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~-----------------------  344 (393)
T 1erj_A          290 NKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-----------------------  344 (393)
T ss_dssp             -----------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE-----------------------
T ss_pred             CcccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-----------------------
Confidence                       34445554  778999999999999999999999999999988773                       


Q ss_pred             ccccceeeeeeeeEEEEEeCCCceEEEecc------CCCEEEEEccCCC
Q 015650          361 GVLPKYFSSEWSVAQFRLVEGSPYIVAFGH------QKNTVVILGMDGR  403 (403)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~------d~~~l~~~~~dG~  403 (403)
                                  +..+++|.+.|..++|++      ++++|++|+.||+
T Consensus       345 ------------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          345 ------------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             ------------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             ------------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence                        344678888999999876      7899999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.7e-39  Score=309.07  Aligned_cols=255  Identities=12%  Similarity=0.161  Sum_probs=210.0

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      .....+.+|...|++++|+|||++||+|+. +.|+|||+.+.+......+. +|...|.+++|++++..+++++.+.. .
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~~-~  127 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRE-R  127 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSS-C
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEECCCC-c
Confidence            345677899999999999999999999985 45999999765554445565 68889999999999988887664300 0


Q ss_pred             CceEEEEECCCCceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      .+.|++||  .++.+..+. |...|.+++|+|++. .++   .|++|++||..+++++..+.+|...+..++|+|+++  
T Consensus       128 ~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~--  203 (611)
T 1nr0_A          128 FGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS--  203 (611)
T ss_dssp             SEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS--
T ss_pred             eeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC--
Confidence            14677776  566667777 999999999999985 355   489999999999999999999999999999999987  


Q ss_pred             EEEeeCCccCeEEEEEccCCcee-EEe-------ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec--
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTK-FIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--  299 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~-~~~-------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--  299 (403)
                      ++++ ++.|+.|++||+.++... .+.       +|...|.+++|+|+|++|++++.|++ |+|||+.+++++.++..  
T Consensus       204 ~las-~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~  281 (611)
T 1nr0_A          204 LFAS-TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGT  281 (611)
T ss_dssp             EEEE-EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCS
T ss_pred             EEEE-EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCC
Confidence            3444 348999999998875543 342       79999999999999999999999999 99999998877665431  


Q ss_pred             ---------------------------------------CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          300 ---------------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       300 ---------------------------------------~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                                                             ..|...|++++|+|||++|++++.|++|++||+.+++..
T Consensus       282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence                                                   136788999999999999999999999999999987643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=281.28  Aligned_cols=284  Identities=12%  Similarity=0.164  Sum_probs=242.1

Q ss_pred             CCCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650           70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (403)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (403)
                      ...........+.+|.+.|++++|+|++++|++++.+ .|+||++.+++..  ..+. +|...|.++.|++++..+++++
T Consensus        17 ~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--GTLD-GHTGTIWSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             CSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh--hhhh-hcCCcEEEEEEcCCCCEEEEEe
Confidence            3444455557789999999999999999999999855 5999999887765  5565 7889999999999999999999


Q ss_pred             CCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ec-----CeEEEEEcCCce-----------eeeE
Q 015650          149 PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LE-----QKIFVYNFADLK-----------LLHQ  209 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d-----~~i~i~d~~~~~-----------~~~~  209 (403)
                      .|     +.|++||+.+++.+..+.+...|.+++|+|++.+++   .+     +.|++||+..+.           .+..
T Consensus        94 ~d-----g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~  168 (369)
T 3zwl_B           94 AD-----YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK  168 (369)
T ss_dssp             TT-----TEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE
T ss_pred             CC-----CeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee
Confidence            88     999999999999999999999999999999999888   25     899999998653           2334


Q ss_pred             eeccCC--CceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          210 IETIAN--PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       210 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      +..+..  .+..++++++++.++.   ++.|+.|++||++.  .....+..|...|.+++|+|++++|++++.|+. |++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v  244 (369)
T 3zwl_B          169 IITHEGLDAATVAGWSTKGKYIIA---GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFL  244 (369)
T ss_dssp             EECCTTCCCEEEEEECGGGCEEEE---EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEE
T ss_pred             ccCCcCccceeEEEEcCCCCEEEE---EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEE
Confidence            444444  7888999998874433   34789999999997  445667789999999999999999999999999 999


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC--------------cEEEEEeecCCCCCCCCCCCCCCCCC
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG--------------TVHVFNLKVNSGSARSEPRSTSDPTL  351 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg--------------~v~iwd~~~~~~~~~~~~~~~~~~~~  351 (403)
                      ||+.+++.+..+.   +...+..++|+|+++++++++.++              .+++||+.+++.              
T Consensus       245 ~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------  307 (369)
T 3zwl_B          245 VDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE--------------  307 (369)
T ss_dssp             EETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE--------------
T ss_pred             EECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc--------------
Confidence            9999999999888   567899999999999999999888              788888877663              


Q ss_pred             cccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                           +..+..|.+.++.++|+|++++|++++.||+
T Consensus       308 ---------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          308 ---------------------IGRVQGHFGPLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             ---------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ---------------------hhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence                                 3456778899999999999999999999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.1e-38  Score=300.41  Aligned_cols=271  Identities=20%  Similarity=0.301  Sum_probs=237.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|...|.+++|+|++++|+++++++ |++|+......   ..+. +|...+.+++|++++..+++++.+     +.
T Consensus       297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~---~~~~-~~~~~v~~~~~s~~g~~l~~~~~d-----g~  367 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL---QTLT-GHSSSVWGVAFSPDGQTIASASDD-----KT  367 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE---EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee---EEEe-CCCCCEEEEEECCCCCEEEEEeCC-----CE
Confidence            45678999999999999999999998554 99999865443   3444 688899999999999999999998     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      |++|| .+++.+..+. |...|.+++|+|++.+++   .|+.|++||. +++.+..+..|...+..++|+|+++.  +++
T Consensus       368 v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~--l~~  443 (577)
T 2ymu_A          368 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQT--IAS  443 (577)
T ss_dssp             EEEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSE--EEE
T ss_pred             EEEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCE--EEE
Confidence            99999 4677788887 899999999999999887   3899999995 67888889999999999999999874  343


Q ss_pred             eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                       ++.|+.|++||...+....+.+|...|.+++|+|++++|++++.|+. |++||. +++++..+.+  |...|++++|+|
T Consensus       444 -~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~  518 (577)
T 2ymu_A          444 -ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSP  518 (577)
T ss_dssp             -EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECT
T ss_pred             -EcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcC-CCCEEEEEeC--CCCCEEEEEEcC
Confidence             34899999999988888889999999999999999999999999999 999994 7888888886  778999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCC
Q 015650          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~  393 (403)
                      ||++|++++.||.|++||+ +++.                                   +..+.+|.+.|+.++|+|||+
T Consensus       519 dg~~l~s~~~dg~v~lwd~-~~~~-----------------------------------~~~~~~h~~~v~~~~fs~dg~  562 (577)
T 2ymu_A          519 DGQTIASASDDKTVKLWNR-NGQL-----------------------------------LQTLTGHSSSVWGVAFSPDGQ  562 (577)
T ss_dssp             TSSCEEEEETTSEEEEECT-TSCE-----------------------------------EEEEECCSSCEEEEEECTTSS
T ss_pred             CCCEEEEEECcCEEEEEeC-CCCE-----------------------------------EEEEcCCCCCEEEEEEcCCCC
Confidence            9999999999999999995 3331                                   445788899999999999999


Q ss_pred             EEEEEccCCC
Q 015650          394 TVVILGMDGR  403 (403)
Q Consensus       394 ~l~~~~~dG~  403 (403)
                      +|++++.||+
T Consensus       563 ~l~s~~~D~~  572 (577)
T 2ymu_A          563 TIASASSDKT  572 (577)
T ss_dssp             CEEEEETTSC
T ss_pred             EEEEEeCCCE
Confidence            9999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-38  Score=280.05  Aligned_cols=280  Identities=14%  Similarity=0.182  Sum_probs=218.1

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEec-ccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ...+.+|.+.|.+++|+++  +|++|+ |+.|+||++..........+ ..+|...|.+++|++++..+++++.|     
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----   79 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-----   79 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-----
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-----
Confidence            3457789999999999998  888888 55599999986543333445 32388999999999999999999999     


Q ss_pred             ceEEEEECCC-------CceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCC----ceeeeEeeccCCCceeE
Q 015650          156 NKVMIWDDHQ-------SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD----LKLLHQIETIANPKGLC  220 (403)
Q Consensus       156 ~~i~iwd~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~  220 (403)
                      +.|++||+..       .+.+..+. |...|.+++|+|++.+++   .|++|++||++.    .+++..+..|...+..+
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            9999999853       34566666 899999999999999888   399999999943    25667788899999999


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCC---ceeEEeecCCceEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCC----
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDG----  291 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~---~~~~~~~~~~~i~~~~~sp~--g~~l~s~~~dg~~i~iwd~~~~----  291 (403)
                      +|+|++.  ++++ ++.|+.|++||...+   .+..+.+|...|.+++|+|+  +.+|++++.|++ |++||+..+    
T Consensus       160 ~~~p~~~--~l~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~  235 (330)
T 2hes_X          160 IWHPSEA--LLAS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDD  235 (330)
T ss_dssp             EECSSSS--EEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTS
T ss_pred             EECCCCC--EEEE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccc
Confidence            9999877  3444 448999999998764   45677899999999999998  779999999999 999998754    


Q ss_pred             ----cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccccee
Q 015650          292 ----TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (403)
Q Consensus       292 ----~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (403)
                          .+...+.. .|...|.+++|++++ +|++++.||.|+||++.+++..                             
T Consensus       236 ~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~-----------------------------  284 (330)
T 2hes_X          236 QQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK-----------------------------  284 (330)
T ss_dssp             CEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE-----------------------------
T ss_pred             cceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE-----------------------------
Confidence                33334432 277899999999765 8999999999999999865310                             


Q ss_pred             eeeeeeEE-EEEeCC-CceEEEecc--CCCEEEEEccCCC
Q 015650          368 SSEWSVAQ-FRLVEG-SPYIVAFGH--QKNTVVILGMDGR  403 (403)
Q Consensus       368 ~~~~~~~~-~~~~~~-~~~~~~fs~--d~~~l~~~~~dG~  403 (403)
                          .+.. ...|.. .+.+++|+|  +++.|++|+.||+
T Consensus       285 ----~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          285 ----VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             ----EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred             ----EEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence                0111 123444 789999999  7899999999984

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.5e-38  Score=277.56  Aligned_cols=241  Identities=16%  Similarity=0.247  Sum_probs=216.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|...|.+++|++++.++++++ |+.|++||+.+++..  ..+. .+...+..+.|++++..+++++.+     +.
T Consensus        74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~--~~~~-~~~~~~~~~~~spdg~~l~~g~~d-----g~  145 (321)
T 3ow8_A           74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI--KSID-AGPVDAWTLAFSPDSQYLATGTHV-----GK  145 (321)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCTTCCCCEEECTTSSEEEEECTT-----SE
T ss_pred             eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE--EEEe-CCCccEEEEEECCCCCEEEEEcCC-----Cc
Confidence            35789999999999999999999998 555999999988765  4454 567778899999999999999999     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      |++|++.+++....+. +...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..++|+|+++  ++++
T Consensus       146 v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~--~l~s  223 (321)
T 3ow8_A          146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ--LLVT  223 (321)
T ss_dssp             EEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC--EEEE
T ss_pred             EEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC--EEEE
Confidence            9999999999888887 788999999999999888   489999999999999999999999999999999887  3444


Q ss_pred             eCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                       ++.|+.|++||++... ...+.+|...|.+++|+|++++|++++.|+. |+|||+.+++++..+..  |...|.+++|+
T Consensus       224 -~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~--h~~~v~~v~~s  299 (321)
T 3ow8_A          224 -ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFD--HQDQVWGVKYN  299 (321)
T ss_dssp             -ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEEC
T ss_pred             -EcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcC--CCCcEEEEEEC
Confidence             4589999999998854 5567889999999999999999999999999 99999999999999986  77899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEee
Q 015650          313 SNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      |++++|++++.||.|+|||+.
T Consensus       300 ~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          300 GNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-37  Score=278.81  Aligned_cols=289  Identities=16%  Similarity=0.171  Sum_probs=234.8

Q ss_pred             CccccCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCe---eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (403)
                      ...++.+|.+.|++|+|+|+ +++|++|+ |+.|+|||+...+   ......+. +|...|.++.|++++.++++++.| 
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d-  107 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWD-  107 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETT-
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEccc-
Confidence            34578999999999999998 68999998 5559999997543   23345665 789999999999999999999999 


Q ss_pred             CCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceee-eEeeccCCCceeEEEeeCC
Q 015650          152 QYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~  226 (403)
                          +.|++|+........... +...+..+.+++++.+++   .|+.+++||+...... .....|...+..+++++++
T Consensus       108 ----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          108 ----GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             ----SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             ----ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence                999999999988877777 778889999999888777   4899999998765443 3345678888999999988


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      ...++++ ++.|+.|++||++..+ ...+.+|...|.+++|+|++++|++|+.|+. |++||+.+.+.+..+.   +...
T Consensus       184 ~~~~~~s-~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~  258 (340)
T 4aow_A          184 SNPIIVS-CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLD---GGDI  258 (340)
T ss_dssp             SSCEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEE---CSSC
T ss_pred             CCcEEEE-EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeec---CCce
Confidence            7766665 4489999999999865 4567789999999999999999999999999 9999999999998888   4468


Q ss_pred             EEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceE
Q 015650          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (403)
                      |.++.|+|++.++ +++.|+.|++||++++.....+.                          ..........|...|++
T Consensus       259 v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~--------------------------~~~~~~~~~~h~~~v~~  311 (340)
T 4aow_A          259 INALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELK--------------------------QEVISTSSKAEPPQCTS  311 (340)
T ss_dssp             EEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEEC--------------------------CC-------CCCCCEEE
T ss_pred             EEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecc--------------------------ccceeeeccCCCCCEEE
Confidence            9999999987655 55679999999998765321111                          11112234567788999


Q ss_pred             EEeccCCCEEEEEccCCC
Q 015650          386 VAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       386 ~~fs~d~~~l~~~~~dG~  403 (403)
                      ++|+|||++|++|+.||+
T Consensus       312 l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          312 LAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             EEECTTSSEEEEEETTSC
T ss_pred             EEECCCCCEEEEEeCCCE
Confidence            999999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-37  Score=300.28  Aligned_cols=306  Identities=12%  Similarity=0.143  Sum_probs=237.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      .+.+.+.+++|+|||++|+++.++.|+||++.+.+..  ..+. +|...|.+++|+|++.++++++.|     ++|+|||
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~--~~~~-~h~~~v~~~~~spdg~~lasg~~d-----~~v~lWd   87 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT--EIYT-EHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWD   87 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEE
T ss_pred             cccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccC--eEec-CCCCceEEEEECCCCcEEEEEeCC-----CCEEEeE
Confidence            3466778899999999999999888999999766554  4565 799999999999999999999999     9999999


Q ss_pred             CCCCc--eeEEEe-cCCceeEEEEecCceEEEe--c-----CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          163 DHQSR--CIGELS-FRSEVRSVKLRRDRIIVVL--E-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       163 ~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~~~--d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      +.+++  ....+. |...|.+++|+|++..++.  +     +.|++||  .++....+.+|...+..++|+|++... ++
T Consensus        88 ~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~-l~  164 (611)
T 1nr0_A           88 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFR-II  164 (611)
T ss_dssp             SSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCE-EE
T ss_pred             CCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeE-EE
Confidence            97654  344556 8999999999999998872  2     3677777  566777888999999999999987643 33


Q ss_pred             eeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC-----CCcccE
Q 015650          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----ADRAEI  306 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-----~~~~~v  306 (403)
                      + ++.|+.|++||....+ ...+.+|...|.+++|+|+|++|++++.|+. |+|||+.+++++..+...     .|...|
T Consensus       165 s-~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~g~~~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          165 S-GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             E-EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             E-EeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc-EEEEECCCCcEeeeeccccccccccCCCE
Confidence            3 4589999999988744 4567899999999999999999999999999 999999999998887421     378899


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCC----CCccccccccc----ccccceee--eeeeeEEE
Q 015650          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP----TLPTSSLSFIK----GVLPKYFS--SEWSVAQF  376 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~--~~~~~~~~  376 (403)
                      .+++|+|||++|++++.|++|++||+++++....+........    .... +..++.    +.+ ..+.  .......+
T Consensus       243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~i-~~~~~~~~~~~~~~  320 (611)
T 1nr0_A          243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT-KQALVSISANGFI-NFVNPELGSIDQVR  320 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC-SSCEEEEETTCCE-EEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc-CCEEEEEeCCCcE-EEEeCCCCCcceEE
Confidence            9999999999999999999999999998775443321100000    0000 000000    000 0000  01122345


Q ss_pred             EEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          377 RLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       377 ~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .+|.+.|++++|+|||++|++++.||+
T Consensus       321 ~gh~~~v~~l~~spdg~~l~s~s~D~~  347 (611)
T 1nr0_A          321 YGHNKAITALSSSADGKTLFSADAEGH  347 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence            678889999999999999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.9e-37  Score=272.40  Aligned_cols=274  Identities=12%  Similarity=0.147  Sum_probs=232.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeE---EEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+|...|++++|+|++++|++++++.|++|++.+.+..   ...... .|...+.++.|++++..+++++.+     +.
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----~~  120 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGCTLIVGGEA-----ST  120 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECTTSSEEEEEESS-----SE
T ss_pred             eccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeeccccc-CCCCcEEEEEEcCCCCEEEEEcCC-----Cc
Confidence            447999999999999999999999766999999765422   112221 578899999999999999998888     99


Q ss_pred             EEEEECCCCc--eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          158 VMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       158 i~iwd~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      |++||+.+++  ....+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..++++++++.++ 
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-  199 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW-  199 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE-
Confidence            9999999887  445555 788999999999998777   489999999999999999998999999999999887443 


Q ss_pred             EeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEe
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (403)
                       + ++.|+.|++||++.+.......+...+.+++|+|++++|++++.++. |++||+.+++.. .+..  |...|.+++|
T Consensus       200 -~-~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~~--~~~~v~~~~~  273 (337)
T 1gxr_A          200 -T-GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLHL--HESCVLSLKF  273 (337)
T ss_dssp             -E-EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EECC--CSSCEEEEEE
T ss_pred             -E-EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEcC--CccceeEEEE
Confidence             3 34899999999999877766778899999999999999999999999 999999988765 3433  7789999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccC
Q 015650          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (403)
Q Consensus       312 s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d  391 (403)
                      +|++++|++++.||.|++||+.+++.                                   . ....+...+..++|+|+
T Consensus       274 ~~~~~~l~~~~~dg~i~~~~~~~~~~-----------------------------------~-~~~~~~~~v~~~~~s~~  317 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLLNAWRTPYGAS-----------------------------------I-FQSKESSSVLSCDISVD  317 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCE-----------------------------------E-EEEECSSCEEEEEECTT
T ss_pred             CCCCCEEEEecCCCcEEEEECCCCeE-----------------------------------E-EEecCCCcEEEEEECCC
Confidence            99999999999999999999998773                                   1 12345778999999999


Q ss_pred             CCEEEEEccCCC
Q 015650          392 KNTVVILGMDGR  403 (403)
Q Consensus       392 ~~~l~~~~~dG~  403 (403)
                      +++|++++.||+
T Consensus       318 ~~~l~~~~~dg~  329 (337)
T 1gxr_A          318 DKYIVTGSGDKK  329 (337)
T ss_dssp             SCEEEEEETTSC
T ss_pred             CCEEEEecCCCe
Confidence            999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=278.01  Aligned_cols=243  Identities=13%  Similarity=0.122  Sum_probs=199.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEE--EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ..|...|.+++|+|++.+++.+.|+.|+|||+++++....  ..+. +|...|.+++|++++..+++++.|     +.|+
T Consensus        79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~-~H~~~V~~v~~spdg~~l~sgs~d-----~~i~  152 (344)
T 4gqb_B           79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKY-EHDDIVSTVSVLSSGTQAVSGSKD-----ICIK  152 (344)
T ss_dssp             EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT-----SCEE
T ss_pred             eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeecccc-CCCCCEEEEEECCCCCEEEEEeCC-----CeEE
Confidence            3466789999999997555444466699999988765432  2333 689999999999999999999999     9999


Q ss_pred             EEECCCCceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEeec--cCCCceeEEEeeCCCeEEEE
Q 015650          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  232 (403)
                      +||+.+++++..+. |...|.+++|++++. +++   .|++|++||+++++....+..  +...+..+++++++..++ +
T Consensus       153 iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l-~  231 (344)
T 4gqb_B          153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVF-V  231 (344)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEE-E
T ss_pred             EEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcce-E
Confidence            99999999999998 999999999999874 444   489999999999988877643  444577888888766543 3


Q ss_pred             eeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          233 CPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      + |+.|+.|++||++++ .+..+.+|...|++++|+|++ ++|++|+.|++ |+|||+.+++++. +.+  |...|++++
T Consensus       232 s-g~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~~-~~~--H~~~V~~v~  306 (344)
T 4gqb_B          232 F-GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELFR-SQA--HRDFVRDAT  306 (344)
T ss_dssp             E-EETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEEE-ECC--CSSCEEEEE
T ss_pred             E-eccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEEE-EcC--CCCCEEEEE
Confidence            3 458999999999874 467788999999999999998 57999999999 9999999888754 443  889999999


Q ss_pred             eCCCCC-EEEEEeCCCcEEEEEeecCC
Q 015650          311 FSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       311 ~s~d~~-~l~s~~~dg~v~iwd~~~~~  336 (403)
                      |+|+++ +|++++.||+|++|++.+..
T Consensus       307 ~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          307 WSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999986 57799999999999998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-37  Score=286.20  Aligned_cols=244  Identities=16%  Similarity=0.282  Sum_probs=217.5

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ...+.+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+..  ..+. +|...|.++.|++++..+++++.|     +
T Consensus       143 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--~~~~-~h~~~V~~v~~~p~~~~l~s~s~D-----~  214 (410)
T 1vyh_C          143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--RTMH-GHDHNVSSVSIMPNGDHIVSASRD-----K  214 (410)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--ECCC-CCSSCEEEEEECSSSSEEEEEETT-----S
T ss_pred             EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEEc-CCCCCEEEEEEeCCCCEEEEEeCC-----C
Confidence            356788999999999999999999998 455999999877655  6676 788999999999999999999999     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC-----
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-----  227 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  227 (403)
                      .|++||+.+++++..+. |...|.++.+++++.+++   .|++|++||++++++...+..|...+.+++|+|++.     
T Consensus       215 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  294 (410)
T 1vyh_C          215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS  294 (410)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred             eEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchh
Confidence            99999999999999998 899999999999999888   489999999999999999999999999999998642     


Q ss_pred             -------------eEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 015650          228 -------------SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       228 -------------~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (403)
                                   ..++++ |+.|+.|++||++++. +..+.+|...|.+++|+|+|++|++|+.|+. |++||+.++++
T Consensus       295 ~~~~~~~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~  372 (410)
T 1vyh_C          295 EATGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRC  372 (410)
T ss_dssp             GCCSCC-------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCC
T ss_pred             hhccccccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCce
Confidence                         224554 4589999999998854 5667889999999999999999999999999 99999999999


Q ss_pred             EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       294 ~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      +..+..  |...|++++|+|++.+|++|+.||+|+||+++
T Consensus       373 ~~~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          373 MKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEcC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999886  77899999999999999999999999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-37  Score=279.77  Aligned_cols=246  Identities=15%  Similarity=0.198  Sum_probs=199.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecc-cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ..+|...|++++|+|++++|+++.++.|+|||+.+++......+. .+|...|.+++|++++..+++++.|     +.|+
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~  164 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVK  164 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEE
Confidence            456888999999999999888777888999999876544222211 2688899999999999999999999     9999


Q ss_pred             EEECCCCceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEee--ccCCCceeEEEeeCCCeEEEE
Q 015650          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      +||+.+++.+..+. |...|.+++|++++. +++   .|++|++||+++++.+..+.  .+...+..++|+|++..++ +
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l-a  243 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF-A  243 (357)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE-E
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE-E
Confidence            99999999999998 999999999999864 333   48999999999988776554  3455678899999876543 3


Q ss_pred             eeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          233 CPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      + |+.|+.|++||+++. ....+..|...|.+++|+|++ ++|++|+.|++ |+|||+++++++..+.   |...|++|+
T Consensus       244 ~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~~---H~~~V~~va  318 (357)
T 4g56_B          244 C-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDLS---HRDFVTGVA  318 (357)
T ss_dssp             E-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEECC---CSSCEEEEE
T ss_pred             E-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEECC---CCCCEEEEE
Confidence            3 458999999999884 456788999999999999987 57999999999 9999999998887653   889999999


Q ss_pred             eCC-CCCEEEEEeCCCcEEEEEeecCCC
Q 015650          311 FSS-NAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       311 ~s~-d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |+| |+++|++++.||+|++|++.+...
T Consensus       319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          319 WSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            998 899999999999999999987654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.1e-37  Score=274.99  Aligned_cols=298  Identities=10%  Similarity=0.137  Sum_probs=231.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEE-EEEc----CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC---eEEEeeCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCF-AAGT----DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPD  150 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l-~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d  150 (403)
                      .++.+|...|.+++|+|++..+ ++|+    |+.|+||++.+++......+  +|...|.++.|+++   +..+++++.|
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee--cccCcEEEEEEcCCCCCCceEEEecCC
Confidence            4567799999999999999655 5554    34499999998776544444  48889999999998   5888888888


Q ss_pred             CCCCCceEEEEECCCCc-eeEEEe-cCCceeEEEE------ecCceEEE---ecCeEEEEEcCCce-eeeEeeccCC---
Q 015650          151 PQYPLNKVMIWDDHQSR-CIGELS-FRSEVRSVKL------RRDRIIVV---LEQKIFVYNFADLK-LLHQIETIAN---  215 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~------~~~~~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~---  215 (403)
                           |.|++||+.+++ .+..+. |...|.++.|      ++++.+++   .|+.|++||+++++ .+..+..+..   
T Consensus        90 -----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  164 (357)
T 3i2n_A           90 -----GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK  164 (357)
T ss_dssp             -----SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred             -----CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence                 999999999988 788887 9999999955      67887777   48999999999876 6777765544   


Q ss_pred             -CceeEE----EeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcC---CCCEEEEEeCCCcEEEEEE
Q 015650          216 -PKGLCA----VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ---DGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       216 -~~~~~~----~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp---~g~~l~s~~~dg~~i~iwd  287 (403)
                       .+..++    ++++++  ++++ ++.|+.|++||++.........|...|.+++|+|   ++.+|++++.||. |++||
T Consensus       165 ~~v~~~~~~~~~~~~~~--~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d  240 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEER--VVCA-GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFD  240 (357)
T ss_dssp             CCEEEEEEECCCC-CCC--EEEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEE
T ss_pred             CceEEEEEEeccCCCCC--EEEE-EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEe
Confidence             566666    456665  3443 3478999999999988888888999999999999   9999999999999 99999


Q ss_pred             cCCCcEEEEEe---cCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccc
Q 015650          288 TLDGTLLQEVR---RGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (403)
Q Consensus       288 ~~~~~~~~~~~---~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (403)
                      +++++.+..+.   ...|...|++++|+|+++ +|++++.||.|++||++++.............               
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~---------------  305 (357)
T 3i2n_A          241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM---------------  305 (357)
T ss_dssp             EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC---------------
T ss_pred             CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc---------------
Confidence            98765543332   112778999999999999 89999999999999999887543222111000               


Q ss_pred             cceeeeeeeeEEEEEeCCCceEEEeccCCCEEE-EEccCCC
Q 015650          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV-ILGMDGR  403 (403)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~-~~~~dG~  403 (403)
                       ........+..+..|.+.|+.++|+|++++|+ +++.||+
T Consensus       306 -~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~  345 (357)
T 3i2n_A          306 -GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT  345 (357)
T ss_dssp             -CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             -ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence             00001122455778889999999999999998 7998874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-36  Score=297.87  Aligned_cols=297  Identities=16%  Similarity=0.183  Sum_probs=230.0

Q ss_pred             cccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCe---eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      ..+.+|.+.|++|+|+|++ .+|++|+ |+.|+||++....   ......+. +|...|.++.|++++..+++++.|   
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~D---  451 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWD---  451 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT---
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCC---
Confidence            4578999999999999875 7899988 5559999986532   22335565 799999999999999999999999   


Q ss_pred             CCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe---eccCCCceeEEEeeCC
Q 015650          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGV  226 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~  226 (403)
                        +.|+|||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||+.........   ..|...+.+++|++++
T Consensus       452 --g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          452 --GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             --SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             --CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence              999999999999999888 999999999999998877   4999999998654333222   3567788999999987


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (403)
                      ...++++ ++.|+.|++||++... ...+.+|...|.+++|+|+|++|++|+.|+. |+|||+.+++++..+.   +...
T Consensus       530 ~~~~l~s-~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~---~~~~  604 (694)
T 3dm0_A          530 LQPTIVS-ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLE---ANSV  604 (694)
T ss_dssp             SSCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCB---CSSC
T ss_pred             CcceEEE-EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEec---CCCc
Confidence            5545554 4589999999999855 4567889999999999999999999999999 9999999999888776   4468


Q ss_pred             EEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceE
Q 015650          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (403)
Q Consensus       306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (403)
                      |.+++|+|++.+|++++ ++.|+|||+++++....+..+..........              ..  ......+.-.++.
T Consensus       605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~~  667 (694)
T 3dm0_A          605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN--------------SG--PAATKRKVIYCTS  667 (694)
T ss_dssp             EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------------------------CCCCEEE
T ss_pred             EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc--------------cc--cccCCceeEEeee
Confidence            99999999999888776 5569999999887533222110000000000              00  0000111124678


Q ss_pred             EEeccCCCEEEEEccCCC
Q 015650          386 VAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       386 ~~fs~d~~~l~~~~~dG~  403 (403)
                      ++|+|||++|++|+.||+
T Consensus       668 l~~spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          668 LNWSADGSTLFSGYTDGV  685 (694)
T ss_dssp             EEECTTSSEEEEEETTSE
T ss_pred             EEEcCCCCEEEEEcCCCe
Confidence            999999999999999984

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.9e-36  Score=274.42  Aligned_cols=277  Identities=13%  Similarity=0.123  Sum_probs=225.1

Q ss_pred             ccccCCCCCCeEEEEEcCCC-CEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDH-GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYP  154 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~-~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~  154 (403)
                      ...+.+|...|++++|+|++ ++|++|+. +.|+||++.+.+......+. +|...|.++.|++ ++..+++++.|    
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d----  140 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR----  140 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT----
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC----
Confidence            34668899999999999999 89999985 55999999887766544443 6899999999999 77899999998    


Q ss_pred             CceEEEEECCCCceeEEEe----cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          155 LNKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                       +.|++||+.. +.+..+.    +...|.+++|+|++.+++   .|+.|++||+ +++.+..+..|...+..++|+++++
T Consensus       141 -~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          141 -GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             -TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCT
T ss_pred             -CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCC
Confidence             9999999986 5555554    347899999999999888   4899999999 5778888999999999999999987


Q ss_pred             eEEEEeeCCccCeEEEEEccC----CceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-
Q 015650          228 SLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-  301 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~----~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-  301 (403)
                      .+++.  ++.|+.|++||++.    ........|...|.+++|+| ++++|++++.|+. |++||+++++.+..+..+. 
T Consensus       218 ~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          218 WLMAT--SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             TEEEE--EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCB
T ss_pred             CEEEE--EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCccccccccccc
Confidence            54433  35899999999997    45555558999999999999 9999999999999 9999999988776666431 


Q ss_pred             ----Cc----------ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccccee
Q 015650          302 ----DR----------AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (403)
Q Consensus       302 ----~~----------~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (403)
                          |.          ..+..++|+|++++  +++.||.|++||+.+++.                              
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~------------------------------  342 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL------------------------------  342 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE------------------------------
T ss_pred             cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce------------------------------
Confidence                11          34455677777766  777999999999998873                              


Q ss_pred             eeeeeeEEEEE--eCCCceEEEeccCCCEEEEEccCCC
Q 015650          368 SSEWSVAQFRL--VEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       368 ~~~~~~~~~~~--~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                           +..+..  +.+.+..++|+|++++|++|+ ||+
T Consensus       343 -----~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          343 -----VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             -----EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             -----eeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence                 223333  346677789999999999996 763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.1e-36  Score=275.41  Aligned_cols=297  Identities=11%  Similarity=0.166  Sum_probs=229.2

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe------eEEEEecccCcceeEEEEeeeCC----e---EE
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR------EIFRRDFERGGGIGVVEMLFRCN----I---LA  143 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~----~---~~  143 (403)
                      ...+.+|.+.|++++|+|  ++|++|+ |+.|+||++...+      ..  ..+. +|...|.++.|+++    +   ..
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKS--YSHF-VHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGE--EEEE-CCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcc--eEEe-cCCCcEEEEEEecccccCCccccE
Confidence            356789999999999998  7888887 4559999998776      33  4454 68889999999999    8   89


Q ss_pred             EeeCCCCCCCCCceEEEEECCCCce-----eEEEe-c-----CCceeEEEEe----cCceE-EE---ecCeEEEEEcCC-
Q 015650          144 LVGGGPDPQYPLNKVMIWDDHQSRC-----IGELS-F-----RSEVRSVKLR----RDRII-VV---LEQKIFVYNFAD-  203 (403)
Q Consensus       144 ~~s~~~d~~~~~~~i~iwd~~~~~~-----~~~~~-~-----~~~i~~~~~~----~~~~~-~~---~d~~i~i~d~~~-  203 (403)
                      +++++.|     +.|++|++.+++.     +..+. |     ...|.+++|+    |++.+ ++   .|+.|++||+++ 
T Consensus        84 l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           84 VATTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEEEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             EEEEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence            9999888     9999999998886     77777 6     4899999999    99887 66   489999999998 


Q ss_pred             -----ceeee-----Eee-------ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEee---c---CC
Q 015650          204 -----LKLLH-----QIE-------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA---H---DS  259 (403)
Q Consensus       204 -----~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~---~---~~  259 (403)
                           ++.+.     .+.       .+...+..++|++++   ++++ ++.|+.|++||++... ...+..   |   ..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~  234 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSN  234 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEE-EeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence                 77666     664       377889999999987   3333 3589999999998754 455667   8   99


Q ss_pred             ceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEeCCC
Q 015650          260 RIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      .|.+++|+|++++|++++.|   +. |++||+.+++.+..+....           |...|.+++|+|++++|++++.||
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  313 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  313 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ccceEEECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence            99999999999999999999   99 9999999999998887511           568999999999999999999999


Q ss_pred             cEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC----------CEE
Q 015650          326 TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK----------NTV  395 (403)
Q Consensus       326 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~----------~~l  395 (403)
                      .|++||+++++....+...........+         .    ... ......+|...++.++|+|++          ++|
T Consensus       314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~----~~g-~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l  379 (397)
T 1sq9_A          314 KLRFWDVKTKERITTLNMHCDDIEIEED---------I----LAV-DEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESL  379 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCGGGCSSGGG---------C----CCB-CTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE
T ss_pred             eEEEEEcCCCceeEEEecccCcccchhh---------h----hcc-ccccccccCCceeEEEeccccccccccccccceE
Confidence            9999999887742221100000000000         0    000 000012237889999999999          799


Q ss_pred             EEEccCCC
Q 015650          396 VILGMDGR  403 (403)
Q Consensus       396 ~~~~~dG~  403 (403)
                      ++++.||+
T Consensus       380 ~s~~~dg~  387 (397)
T 1sq9_A          380 CCVCLDRS  387 (397)
T ss_dssp             EEEETTTE
T ss_pred             EEecCCCc
Confidence            99999984

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-36  Score=276.22  Aligned_cols=289  Identities=16%  Similarity=0.223  Sum_probs=232.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      |.+.|++++|+|++++|++|+.++ |++|+. +++..  ..+. .|...+.++.|++++..+++++.+     +.|++||
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd  177 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALL--NVLN-FHRAPIVSVKWNKDGTHIISMDVE-----NVTILWN  177 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEE--EEEC-CCCSCEEEEEECTTSSEEEEEETT-----CCEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCee--eecc-CCCccEEEEEECCCCCEEEEEecC-----CeEEEEE
Confidence            688999999999999999998555 999993 33333  4554 688999999999999999999888     9999999


Q ss_pred             CCCCceeEEEe-cCCc---------------eeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650          163 DHQSRCIGELS-FRSE---------------VRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       163 ~~~~~~~~~~~-~~~~---------------i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (403)
                      +.+++.+..+. +...               +.++.|++++.+++  .++.|++||+++++.+..+..|...+..++|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  257 (425)
T 1r5m_A          178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND  257 (425)
T ss_dssp             TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred             CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence            99999988887 5554               99999999998777  589999999999999989989999999999999


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                      +++.  +++ ++.|+.|++||++.+. ...+..|...|.+++|+|++ +|++++.|+. |++||+.+++.+..+..  |.
T Consensus       258 ~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~  330 (425)
T 1r5m_A          258 TNKL--LLS-ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIV--DG  330 (425)
T ss_dssp             TTTE--EEE-EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEEC--TT
T ss_pred             CCCE--EEE-EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEeccc--CC
Confidence            9874  333 3479999999998854 55677899999999999999 9999999999 99999999999988885  66


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC--
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG--  381 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  381 (403)
                      ..|.+++|+|++++|++++.||.|++||+++++........         ..    ...+..  .....+..+..+..  
T Consensus       331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---------~~----~~~~~~--~~~~~~~~~~~~~~~~  395 (425)
T 1r5m_A          331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG---------NR----DGILNP--LPIPLYASYQSSQDND  395 (425)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------------C--EECCEEEEECCTTCCC
T ss_pred             ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeec---------cc----ccccCc--ccchhhhhhcCcccCC
Confidence            89999999999999999999999999999987632111000         00    000000  00012444666655  


Q ss_pred             CceEEEeccCCCEEEEEccCCC
Q 015650          382 SPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       382 ~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      .++.++|+|++++|++++.||+
T Consensus       396 ~v~~~~~s~~~~~l~~~~~dg~  417 (425)
T 1r5m_A          396 YIFDLSWNCAGNKISVAYSLQE  417 (425)
T ss_dssp             CEEEEEECTTSSEEEEEESSSC
T ss_pred             ceEEEEccCCCceEEEEecCce
Confidence            8999999999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.5e-36  Score=264.97  Aligned_cols=236  Identities=14%  Similarity=0.195  Sum_probs=209.2

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEE
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIF  197 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~  197 (403)
                      +.+. +|...|.+++|+|++..+++++.|     |.|++||+.+++.+..+. |..+|.+++|++++.+++   .|++|+
T Consensus         7 ~~~~-~h~~~V~~~~fsp~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            7 KTFS-NRSDRVKGIDFHPTEPWVLTTLYS-----GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             EEEE-EECSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             Eeec-CCCCceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            4565 788999999999999999999999     999999999999999998 889999999999999888   489999


Q ss_pred             EEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc--eeEEeecCCceEEEEEcC-CCCEEE
Q 015650          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQ-DGQLLA  274 (403)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp-~g~~l~  274 (403)
                      +||+++++.+..+..|...+..++|+|+++.  +++ |+.|+.|++||++.+.  ...+.+|...|.+++|+| ++.+|+
T Consensus        81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s-gs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY--VLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSE--EEE-EETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEEEcCCCCE--EEE-ECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence            9999999999999999999999999999873  443 4589999999998753  355788999999999999 689999


Q ss_pred             EEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC--CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCc
Q 015650          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS--NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (403)
Q Consensus       275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~--d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  352 (403)
                      +|+.|+. |++||+.+++....+..+ +...+..+.|+|  ++.+|++++.|++|++||+++++.               
T Consensus       158 sgs~D~~-v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~---------------  220 (304)
T 2ynn_A          158 SGCLDRT-VKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC---------------  220 (304)
T ss_dssp             EEETTSE-EEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE---------------
T ss_pred             EEeCCCe-EEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc---------------
Confidence            9999999 999999888777666653 567899999986  778999999999999999988763               


Q ss_pred             ccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                          +..+..|...+..++|+|+++.|++|+.||+
T Consensus       221 --------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          221 --------------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGT  251 (304)
T ss_dssp             --------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             --------------------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCe
Confidence                                4457788899999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.3e-36  Score=266.54  Aligned_cols=240  Identities=13%  Similarity=0.167  Sum_probs=207.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee--EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ..+..|...|.+++|+|++++|++|+ |+.|++|++.+...  .....+. +|...+.++.|.+++. +++++.|     
T Consensus        91 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s~d-----  163 (340)
T 1got_B           91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQ-IVTSSGD-----  163 (340)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETTE-EEEEETT-----
T ss_pred             eEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec-CCCccEEEEEECCCCc-EEEEECC-----
Confidence            45567889999999999999999998 44599999976532  2334555 7888999999998887 5666667     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||+++++.+..+..|...+..++|+|+++.  +
T Consensus       164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~--l  241 (340)
T 1got_B          164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--F  241 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE--E
T ss_pred             CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE--E
Confidence            999999999999999998 999999999999998887   4899999999999999999999999999999998874  4


Q ss_pred             EeeCCccCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      ++ |+.|+.|++||++.........|   ...|.+++|+|+|++|++|+.|+. |++||+.+++.+..+.+  |...|.+
T Consensus       242 ~s-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~~--h~~~v~~  317 (340)
T 1got_B          242 AT-GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSC  317 (340)
T ss_dssp             EE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEE
T ss_pred             EE-EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEeec--CCCcEEE
Confidence            43 45899999999998665443333   347999999999999999999999 99999999999998886  7789999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEE
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      ++|+|+|++|++|+.||.|+|||
T Consensus       318 ~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          318 LGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.9e-36  Score=271.53  Aligned_cols=305  Identities=14%  Similarity=0.086  Sum_probs=230.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      +..|.+.|++++|+|++++|++++ ++.|+||++.+.+......+. +|...+.++.|++++..+++++.|     +.|+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~   77 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTD-----RNAY   77 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETT-----SCEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCC-----CeEE
Confidence            455899999999999999999997 555999999887643446665 788999999999999999999988     9999


Q ss_pred             EEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCcee---eeEe-eccCCCceeEEEeeCCCeE
Q 015650          160 IWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL---LHQI-ETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       160 iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~  229 (403)
                      +||+.+++....+.   |...|.+++|+|++.+++   .|+.|++||++.++.   ...+ ..|...+..++|+++++. 
T Consensus        78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  156 (372)
T 1k8k_C           78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-  156 (372)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE-
T ss_pred             EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE-
Confidence            99999887655543   888999999999998887   389999999988653   2333 456788999999998774 


Q ss_pred             EEEeeCCccCeEEEEEcc------------------C-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650          230 VLVCPGLQKGQVRVEHYA------------------S-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~------------------~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (403)
                       +++ ++.|+.|++||++                  . .....+..|...|.+++|+|++++|++++.|+. |++||+++
T Consensus       157 -l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~  233 (372)
T 1k8k_C          157 -LAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADK  233 (372)
T ss_dssp             -EEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGG
T ss_pred             -EEE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCC
Confidence             343 3479999999964                  2 344556789999999999999999999999999 99999999


Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec--CC--CCCCCCCCCCCCCCCcccccccccccccce
Q 015650          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV--NS--GSARSEPRSTSDPTLPTSSLSFIKGVLPKY  366 (403)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (403)
                      ++++..+..  |...|.+++|+|++++|+++ .|+.|++|++.+  ++  ....+.......... ......... +.  
T Consensus       234 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--  306 (372)
T 1k8k_C          234 KMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG-LTARERFQN-LD--  306 (372)
T ss_dssp             TTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---------CHHHHHHH-CC--
T ss_pred             CceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh-cchhhhhhh-cc--
Confidence            999999985  66799999999999988887 899999999998  42  111111110000000 000000000 00  


Q ss_pred             eeeeeee------EEE-EEeCCCceEEEec-cCC---CEEEEEccCCC
Q 015650          367 FSSEWSV------AQF-RLVEGSPYIVAFG-HQK---NTVVILGMDGR  403 (403)
Q Consensus       367 ~~~~~~~------~~~-~~~~~~~~~~~fs-~d~---~~l~~~~~dG~  403 (403)
                      . .....      ..+ ..|.+.|++++|+ ++|   ++|++|+.||+
T Consensus       307 ~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~  353 (372)
T 1k8k_C          307 K-KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG  353 (372)
T ss_dssp             C-CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred             c-ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc
Confidence            0 00000      112 3678899999966 677   99999999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.1e-35  Score=283.27  Aligned_cols=271  Identities=20%  Similarity=0.277  Sum_probs=233.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|...|++++|+|++++|++++.+ .|++|+... +..  ..+. +|...+.+++|++++..+++++.|     +.
T Consensus       256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~--~~~~-~h~~~v~~~~~~~~~~~l~t~~~d-----~~  326 (577)
T 2ymu_A          256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLL--QTLT-GHSSSVWGVAFSPDGQTIASASDD-----KT  326 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SC
T ss_pred             EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEE--EEEe-cCCCCeEEEEECCCCCEEEEEeCC-----Ce
Confidence            4577899999999999999999999855 599999753 222  4555 788999999999999999999998     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      |++||.... .+..+. |...|.+++|+|++.+++   .|+.|++||. +++.+..+..|...+..++|+|+++.+  ++
T Consensus       327 i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l--~~  402 (577)
T 2ymu_A          327 VKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI--AS  402 (577)
T ss_dssp             EEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCE--EE
T ss_pred             EEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEE--EE
Confidence            999997654 455555 899999999999999888   3899999995 678888899999999999999998854  33


Q ss_pred             eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                       ++.|+.|++||...+....+.+|...|.+++|+|++++|++++.|+. |++||. +++.+..+..  |...|++++|+|
T Consensus       403 -~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~~--~~~~v~~~~~sp  477 (577)
T 2ymu_A          403 -ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSP  477 (577)
T ss_dssp             -EETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECT
T ss_pred             -EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEcC--CCCCEEEEEEcC
Confidence             34899999999887888889999999999999999999999999999 999996 6778888875  778999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCC
Q 015650          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~  393 (403)
                      |+++|++++.|+.|++||. +++.                                   +..+..|.+.|+.++|+|||+
T Consensus       478 d~~~las~~~d~~i~iw~~-~~~~-----------------------------------~~~~~~h~~~v~~l~~s~dg~  521 (577)
T 2ymu_A          478 DGQTIASASDDKTVKLWNR-NGQL-----------------------------------LQTLTGHSSSVRGVAFSPDGQ  521 (577)
T ss_dssp             TSCEEEEEETTSEEEEEET-TSCE-----------------------------------EEEEECCSSCEEEEEECTTSS
T ss_pred             CCCEEEEEeCCCEEEEEcC-CCCE-----------------------------------EEEEeCCCCCEEEEEEcCCCC
Confidence            9999999999999999995 3331                                   344678889999999999999


Q ss_pred             EEEEEccCCC
Q 015650          394 TVVILGMDGR  403 (403)
Q Consensus       394 ~l~~~~~dG~  403 (403)
                      +|++++.||+
T Consensus       522 ~l~s~~~dg~  531 (577)
T 2ymu_A          522 TIASASDDKT  531 (577)
T ss_dssp             CEEEEETTSE
T ss_pred             EEEEEECcCE
Confidence            9999999984

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.8e-36  Score=261.86  Aligned_cols=248  Identities=16%  Similarity=0.156  Sum_probs=200.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC--eEEEeeCCCCCCCCCc
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLN  156 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~  156 (403)
                      ++.+|.+.|++++|+|+|++||+|+ |+.|+||++..........+. +|...|.++.|+++  +..+++++.|     +
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D-----~   77 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----G   77 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETT-----T
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCC-----C
Confidence            4678999999999999999999998 555999999754333335666 79999999999753  7789999999     9


Q ss_pred             eEEEEECCCCc--eeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCce--eeeEeeccCCCceeEEEeeCC
Q 015650          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       157 ~i~iwd~~~~~--~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~  226 (403)
                      +|++||+.+++  .+..+. |...|.+++|+|+  +.+++   .|++|++||++++.  ....+..|...+..++|+|+.
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence            99999998874  455565 8899999999997  66666   49999999998753  245667888899999999873


Q ss_pred             C-----------eEEEEeeCCccCeEEEEEccCCc-----eeEEeecCCceEEEEEcCCC---CEEEEEeCCCcEEEEEE
Q 015650          227 G-----------SLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFN  287 (403)
Q Consensus       227 ~-----------~~~~~~~g~~d~~i~v~d~~~~~-----~~~~~~~~~~i~~~~~sp~g---~~l~s~~~dg~~i~iwd  287 (403)
                      .           ..++++ |+.|+.|++||++...     ...+.+|...|.+++|+|++   .+|++++.|++ |+|||
T Consensus       158 ~~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd  235 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWT  235 (297)
T ss_dssp             ------------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEE
T ss_pred             ccccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEE
Confidence            1           224554 4589999999998743     34677899999999999985   89999999999 99999


Q ss_pred             cCCCc---EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          288 TLDGT---LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       288 ~~~~~---~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      +.+..   ....+....|...|.+++|+|+|++|++++.||.|+||+....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            97743   2223322336788999999999999999999999999998743

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.7e-36  Score=271.56  Aligned_cols=281  Identities=14%  Similarity=0.200  Sum_probs=228.3

Q ss_pred             cccCCCCCCeEEEEEcCC---CC--EEEEEcCCcEEEEEcCCCeeEEEE-ecc-cCcceeEEEEeeeCC----eEEEeeC
Q 015650           79 STSSSPPPTLLHISFNQD---HG--CFAAGTDHGFRIYNCDPFREIFRR-DFE-RGGGIGVVEMLFRCN----ILALVGG  147 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d---~~--~l~~~~~~~i~iw~~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~----~~~~~s~  147 (403)
                      ....+|...|++++|+|+   +.  +++++.++.|+||++.+.+..... ... ..+...+.+++|+++    +..++++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            345689999999999984   33  556666778999999866544221 111 136678999999998    7889999


Q ss_pred             CCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEe---eccCCCcee
Q 015650          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGL  219 (403)
Q Consensus       148 ~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~  219 (403)
                      +.|     |.|++||+.+++.+..+. |...|.+++|+| ++.+++   .|+.|++||+++++.+..+   ..|...+..
T Consensus        92 ~~d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           92 GSR-----GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             ETT-----CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred             cCC-----CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence            988     999999999999999998 999999999999 888777   3899999999999988888   678889999


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----------------------------eEEeecCCceEEEEEcCCC
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------------------------KFIMAHDSRIACFALTQDG  270 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----------------------------~~~~~~~~~i~~~~~sp~g  270 (403)
                      ++|+++++.+  ++ ++.|+.|++||++.+..                             .....|...|.+++|+  +
T Consensus       167 ~~~~~~~~~l--~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          167 ADYDLLGEKI--MS-CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEECTTSSEE--EE-EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             EEECCCCCEE--EE-ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            9999988743  33 34799999999987432                             1223389999999998  7


Q ss_pred             CEEEEEeCCCcEEEEEEcCCCcE--------------EEEEecCCCcccEEEEEeCCC--CCEEEEEeCCCcEEEEEeec
Q 015650          271 QLLATSSTKGTLVRIFNTLDGTL--------------LQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~l~~s~d--~~~l~s~~~dg~v~iwd~~~  334 (403)
                      ++|++++.|+. |++||+.+++.              +..+..  |...|++++|+|+  +++|++++.||.|++||+++
T Consensus       242 ~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          242 DLILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             TEEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred             CEEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence            79999999999 99999987643              666664  6688999999999  99999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEe--CCCceEEEeccCCCEEEEEccCCC
Q 015650          335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV--EGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ++....                               ....+..+  ...++.++|+|++++|++++.||+
T Consensus       319 ~~~~~~-------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  358 (366)
T 3k26_A          319 EDPHKA-------------------------------KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS  358 (366)
T ss_dssp             SSGGGC-------------------------------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCccc-------------------------------cceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence            874110                               12234555  578999999999999999999984

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=279.48  Aligned_cols=308  Identities=13%  Similarity=0.131  Sum_probs=231.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCC--eeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCce
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNK  157 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~  157 (403)
                      ..|...|++++|+|++++|++|+.+ .|++|++...  .......+. +|...|.++.|+++ +..+++++.|     +.
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d-----g~  137 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNN-----GE  137 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSS-----SC
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCC-----Ce
Confidence            3588899999999999999999854 5999999861  111235565 78899999999998 7889999988     99


Q ss_pred             EEEEECCCCc------eeEEE---e-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCceeeeEeecc------CCCc
Q 015650          158 VMIWDDHQSR------CIGEL---S-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETI------ANPK  217 (403)
Q Consensus       158 i~iwd~~~~~------~~~~~---~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~------~~~~  217 (403)
                      |++||+.+++      ....+   . |...|.+++|+|+ +.+++   .|+.|++||+++++.+..+..+      ...+
T Consensus       138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence            9999999886      33333   3 8889999999998 56666   4899999999999998888766      6788


Q ss_pred             eeEEEeeCCCeEEEEeeCCccC---eEEEEEccCC--ceeEEe-ecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCC
Q 015650          218 GLCAVSQGVGSLVLVCPGLQKG---QVRVEHYASK--RTKFIM-AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLD  290 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~---~i~v~d~~~~--~~~~~~-~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~  290 (403)
                      ..++|+|++..++++.  +.++   .|++||++..  ....+. +|...|.+++|+| ++++|++++.|+. |++||+.+
T Consensus       218 ~~~~~~~~~~~~l~~~--~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~  294 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATA--TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES  294 (416)
T ss_dssp             EEEEECSSCTTEEEEE--ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS
T ss_pred             EEEEECCCCCCEEEEE--ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC
Confidence            9999999976554443  4667   9999999984  455666 8999999999999 9999999999999 99999999


Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccc-cc--ccce
Q 015650          291 GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK-GV--LPKY  366 (403)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~  366 (403)
                      ++++..+..  |...|.+++|+|++ .+|++++.||.|++|++.+.+............  . .....+.. .-  ....
T Consensus       295 ~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~  369 (416)
T 2pm9_A          295 AEQLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQ--Q-ESETDFWNNVSREESKE  369 (416)
T ss_dssp             CCEEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------------CCS
T ss_pred             CccceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccc--c-CCccccccccccccccc
Confidence            999999986  67899999999999 899999999999999999887544332100000  0 00000000 00  0000


Q ss_pred             eeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          367 FSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      -.....+.....+...+..++|+|||++|++++.||+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~  406 (416)
T 2pm9_A          370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKG  406 (416)
T ss_dssp             CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSC
T ss_pred             ccccccccCCccccCCccceEEeeCCeEEEEeCCCCe
Confidence            0000000001113456778999999999999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.9e-35  Score=258.44  Aligned_cols=243  Identities=13%  Similarity=0.268  Sum_probs=206.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|...|.+++|+|++++|++|+ |+.|+|||+.+++..  ..+. +|...|.++.|++++..+++++.|     +.
T Consensus        59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~s~D-----~~  130 (319)
T 3frx_A           59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY--QRFV-GHKSDVMSVDIDKKASMIISGSRD-----KT  130 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEECTTSCEEEEEETT-----SC
T ss_pred             eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCee--EEEc-cCCCcEEEEEEcCCCCEEEEEeCC-----Ce
Confidence            45788999999999999999999998 555999999988765  5565 799999999999999999999999     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCc------eEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDR------IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~------~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      |++||++ ++.+..+. |...|.++.+.|..      ..++   .|+.|++||+++++....+.+|...+..++++|+++
T Consensus       131 i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~  209 (319)
T 3frx_A          131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT  209 (319)
T ss_dssp             EEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS
T ss_pred             EEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC
Confidence            9999986 45566665 89999999999854      3455   499999999999999999999999999999999887


Q ss_pred             eEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC------C
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG------A  301 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~------~  301 (403)
                        ++++ ++.|+.|++||++.++......+...|.+++|+|++.+|++++.+ . +++|++.....+..+...      .
T Consensus       210 --~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~-i~v~~~~~~~~~~~~~~~~~~~~~~  284 (319)
T 3frx_A          210 --LIAS-AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-G-IKVFSLDPQYLVDDLRPEFAGYSKA  284 (319)
T ss_dssp             --EEEE-EETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-E-EEEEEETTEEEEEEECCCCTTCCGG
T ss_pred             --EEEE-EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-C-cEEEEeCcCeeeeccCccccccccC
Confidence              3444 348999999999987765554566789999999999999988765 4 999999988877776532      1


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      +...+.+++|+|||++|++|+.||.|+|||+.+.
T Consensus       285 ~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             GCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             cCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            3457999999999999999999999999999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=269.96  Aligned_cols=274  Identities=17%  Similarity=0.214  Sum_probs=226.1

Q ss_pred             cCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEc----CCCe------eEEE--Eeccc-----CcceeEEEEeeeCCe
Q 015650           81 SSSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNC----DPFR------EIFR--RDFER-----GGGIGVVEMLFRCNI  141 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~-~l~~~~~~~-i~iw~~----~~~~------~~~~--~~~~~-----~~~~~v~~~~~~~~~  141 (403)
                      ...|.+.|++++|+|+++ +|++|+.++ |++|++    .+++      ....  ..+..     +|...|.++.|++++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            345668999999999999 999998544 999999    7666      2211  11211     157799999999999


Q ss_pred             EEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCC-
Q 015650          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANP-  216 (403)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~-  216 (403)
                      .++++++.+     |.|++|| .+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..+... 
T Consensus       121 ~~l~~~~~d-----g~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (425)
T 1r5m_A          121 NSIVTGVEN-----GELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG  194 (425)
T ss_dssp             SEEEEEETT-----SCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred             CEEEEEeCC-----CeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence            999999988     9999999 7788888888 899999999999998777   4899999999999998888777666 


Q ss_pred             --------------ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCc
Q 015650          217 --------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGT  281 (403)
Q Consensus       217 --------------~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~  281 (403)
                                    +..+++++++.   +++ +..++.|++||++.+. ...+..|...|.+++|+|++++|++++.|+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          195 SSINAENHSGDGSLGVDVEWVDDDK---FVI-PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             -----------CCCBSCCEEEETTE---EEE-ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             cceeeccccCCcceeeEEEEcCCCE---EEE-EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence                          88889988743   333 3489999999999854 4567789999999999999999999999999


Q ss_pred             EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccc
Q 015650          282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG  361 (403)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (403)
                       |++||+.+++.+..+..  |...|.+++|+|++ +|++++.||.|++||+++++.                        
T Consensus       271 -i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~------------------------  322 (425)
T 1r5m_A          271 -LRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL------------------------  322 (425)
T ss_dssp             -EEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE------------------------
T ss_pred             -EEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE------------------------
Confidence             99999999998888875  67899999999999 999999999999999988763                        


Q ss_pred             cccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          362 VLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                 +..+..+...+..++|+|++++|++++.||+
T Consensus       323 -----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  353 (425)
T 1r5m_A          323 -----------LALSIVDGVPIFAGRISQDGQKYAVAFMDGQ  353 (425)
T ss_dssp             -----------EEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             -----------eEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence                       3345667789999999999999999999984

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.7e-35  Score=262.64  Aligned_cols=277  Identities=13%  Similarity=0.144  Sum_probs=223.7

Q ss_pred             CCccccCCCCCCeEEEEEcCC---CCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQD---HGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d---~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (403)
                      .....+.+|.+.|++++|+|+   |++|++|+.+ .|+||++.+........+. +|...|.++.|++++..+++++.| 
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-  107 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD-  107 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT-
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCC-
Confidence            344678899999999999999   6999999855 4999999874444435555 688999999999999999999998 


Q ss_pred             CCCCceEEEEECCCCceeEEEecCCceeEEEE--ecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC
Q 015650          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL--RRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (403)
                          |.|++||+.+++.+....|...|.+++|  ++++.+++   .|+.|++||+++++.+..+..+.   ...++.+..
T Consensus       108 ----g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~  180 (368)
T 3mmy_A          108 ----KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCADVIY  180 (368)
T ss_dssp             ----SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEEEET
T ss_pred             ----CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEEecC
Confidence                9999999999998887779999999999  88988777   38999999999999888887654   344444555


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCceeEE---eecCCceEEEEEcCCCCE----EEEEeCCCcEEEEEEcCCC---cEEEE
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQL----LATSSTKGTLVRIFNTLDG---TLLQE  296 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~~~~~---~~~~~~i~~~~~sp~g~~----l~s~~~dg~~i~iwd~~~~---~~~~~  296 (403)
                      +.++++   ..++.+++|+++.......   ..+...+.++.+.++...    +++++.|+. |++||+...   +.+..
T Consensus       181 ~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~  256 (368)
T 3mmy_A          181 PMAVVA---TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFT  256 (368)
T ss_dssp             TEEEEE---EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEE
T ss_pred             CeeEEE---eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCcccccee
Confidence            544443   3689999999988543322   234456677777666554    999999999 999999887   55666


Q ss_pred             EecCCCcc------------cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccc
Q 015650          297 VRRGADRA------------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (403)
Q Consensus       297 ~~~~~~~~------------~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (403)
                      +..  |..            .|++++|+|++++|++++.||.|++||+++++.                           
T Consensus       257 ~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~---------------------------  307 (368)
T 3mmy_A          257 FKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK---------------------------  307 (368)
T ss_dssp             EEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE---------------------------
T ss_pred             eee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE---------------------------
Confidence            665  333            699999999999999999999999999998763                           


Q ss_pred             ceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                              +..+..|.+.+..++|+|||++|++++.||
T Consensus       308 --------~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          308 --------LKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             --------EEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             --------EEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence                    333556678999999999999999999987

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-34  Score=263.78  Aligned_cols=239  Identities=18%  Similarity=0.245  Sum_probs=206.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      +...|.+++|+|+|++|++|+. +.|+|||+.+.+..  ..+. +|...|.++.|++++..+++++.|     +.|++||
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd  193 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQ-GHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWD  193 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEc-cCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEE
Confidence            3345999999999999999985 45999999887655  5565 789999999999999999999999     9999999


Q ss_pred             CCCCceeEEEecCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEe-------eccCCCceeEEEeeCCCeEEE
Q 015650          163 DHQSRCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQI-------ETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      +.+++....+.+...+.+++|+| ++.+++   .|+.|++||+++++.+..+       .+|...+..++|+++++.  +
T Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~--l  271 (393)
T 1erj_A          194 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--V  271 (393)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE--E
T ss_pred             CCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE--E
Confidence            99999988888888999999999 888877   4899999999998877766       467788999999999874  3


Q ss_pred             EeeCCccCeEEEEEccCC-------------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          232 VCPGLQKGQVRVEHYASK-------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~-------------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      ++ |+.|+.|++||++..             ....+.+|...|.+++|+|++.+|++|+.|+. |++||+.+++++..+.
T Consensus       272 ~s-~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          272 VS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             EE-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred             EE-EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEEC
Confidence            43 458999999998752             23456789999999999999999999999999 9999999999999888


Q ss_pred             cCCCcccEEEEEeCC------CCCEEEEEeCCCcEEEEEeecCC
Q 015650          299 RGADRAEIYSLAFSS------NAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       299 ~~~~~~~v~~l~~s~------d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +  |...|.+++|++      ++.+|++|+.||+|+||++...+
T Consensus       350 ~--h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          350 G--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             C--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             C--CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence            6  778999999886      68899999999999999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=253.46  Aligned_cols=271  Identities=14%  Similarity=0.141  Sum_probs=223.1

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|.+.|++++| +++++|++|+.++ |++|++.+....  ..+. .|...+.++.|++++..+++++.+     
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----   80 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--TVVY-TGQGFLNSVCYDSEKELLLFGGKD-----   80 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--EEEE-ECSSCEEEEEEETTTTEEEEEETT-----
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--EEee-cCCccEEEEEECCCCCEEEEecCC-----
Confidence            34668899999999999 9999999998555 999999876654  4444 578899999999999999999998     


Q ss_pred             ceEEEEECCCC---ceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEee-CCCeE
Q 015650          156 NKVMIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  229 (403)
                      +.|++|++...   +.+..+. |...|.++.|..+..+.+ .|+.|++||  .++.+..+..+...+..+++.+ +++. 
T Consensus        81 g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~-  157 (313)
T 3odt_A           81 TMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK-  157 (313)
T ss_dssp             SCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE-
T ss_pred             CeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE-
Confidence            99999998765   5566666 899999999944322222 489999999  6778888888999999999988 5553 


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEee-cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      + ++ ++.|+.|++||.. .....+.. |...+.+++|+|++. |++++.|+. |++||+++++.+..+..  |...|++
T Consensus       158 l-~~-~~~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~  230 (313)
T 3odt_A          158 F-LT-ASADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEG--HESFVYC  230 (313)
T ss_dssp             E-EE-EETTSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEE
T ss_pred             E-EE-EECCCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhc--CCceEEE
Confidence            3 32 3479999999933 34444555 899999999999998 889999999 99999999999999986  6789999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEe
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF  388 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  388 (403)
                      ++|+|++ .|++++.||.|++||+++++.                                   ...+..+...+..++|
T Consensus       231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~-----------------------------------~~~~~~~~~~i~~~~~  274 (313)
T 3odt_A          231 IKLLPNG-DIVSCGEDRTVRIWSKENGSL-----------------------------------KQVITLPAISIWSVDC  274 (313)
T ss_dssp             EEECTTS-CEEEEETTSEEEEECTTTCCE-----------------------------------EEEEECSSSCEEEEEE
T ss_pred             EEEecCC-CEEEEecCCEEEEEECCCCce-----------------------------------eEEEeccCceEEEEEE
Confidence            9999999 588999999999999998873                                   3346677789999999


Q ss_pred             ccCCCEEEEEccCCC
Q 015650          389 GHQKNTVVILGMDGR  403 (403)
Q Consensus       389 s~d~~~l~~~~~dG~  403 (403)
                      +|+++ +++++.||+
T Consensus       275 ~~~~~-~~~~~~dg~  288 (313)
T 3odt_A          275 MSNGD-IIVGSSDNL  288 (313)
T ss_dssp             CTTSC-EEEEETTSC
T ss_pred             ccCCC-EEEEeCCCc
Confidence            99998 667888874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=273.59  Aligned_cols=307  Identities=10%  Similarity=0.137  Sum_probs=217.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee---------EEEEecccCcc------------eeEEEEeeeC
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---------IFRRDFERGGG------------IGVVEMLFRC  139 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~---------~~~~~~~~~~~------------~~v~~~~~~~  139 (403)
                      ..+.+.|++++|+|+|++||+|+.++ |+||++.+.+.         .....+. +|.            ..|.++.|++
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcC
Confidence            34678999999999999999998555 99999986552         1235565 676            7799999999


Q ss_pred             Ce--EEEeeCCCCCCCCCceEEEEECCCCcee---------------------------------------EEE-e-cCC
Q 015650          140 NI--LALVGGGPDPQYPLNKVMIWDDHQSRCI---------------------------------------GEL-S-FRS  176 (403)
Q Consensus       140 ~~--~~~~s~~~d~~~~~~~i~iwd~~~~~~~---------------------------------------~~~-~-~~~  176 (403)
                      ++  ..+++++.|     +.|++||+.+++..                                       ..+ . |..
T Consensus       104 ~~~~~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B          104 QKNAAQFLLSTND-----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             CCSSSEEEEEECS-----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             CCCcceEEEeCCC-----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence            87  677777888     99999998775432                                       122 2 889


Q ss_pred             ceeEEEEecCceEEE--ecCeEEEEEcCC-ceeee-------EeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEc
Q 015650          177 EVRSVKLRRDRIIVV--LEQKIFVYNFAD-LKLLH-------QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (403)
Q Consensus       177 ~i~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~  246 (403)
                      .|.+++|+|++.+++  .|+.|++||+++ ++.+.       .+..|...+..++|+|++..+ +++ |+.|+.|++||+
T Consensus       179 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s-~~~dg~i~iwd~  256 (447)
T 3dw8_B          179 HINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT-FVY-SSSKGTIRLCDM  256 (447)
T ss_dssp             CCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE-EEE-EETTSCEEEEET
T ss_pred             ceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE-EEE-EeCCCeEEEEEC
Confidence            999999999999888  599999999984 44444       245788889999999998333 333 358999999999


Q ss_pred             cCCc-----eeEEeecCC------------ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC-CcEEEEEecCCCcc----
Q 015650          247 ASKR-----TKFIMAHDS------------RIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRA----  304 (403)
Q Consensus       247 ~~~~-----~~~~~~~~~------------~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~----  304 (403)
                      +.+.     ...+..|..            .|.+++|+|+|++|++++. +. |+|||+++ ++++..+..+....    
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~l~  334 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQVHEYLRSKLC  334 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeecccccccccc
Confidence            9866     467777775            8999999999999999998 98 99999997 88888887531100    


Q ss_pred             ---------cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCC-CcccccccccccccceeeeeeeeE
Q 015650          305 ---------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT-LPTSSLSFIKGVLPKYFSSEWSVA  374 (403)
Q Consensus       305 ---------~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  374 (403)
                               .+..++|+|++++|++++.||.|++||+.+++... +..+...... .......+... .++. .......
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~  411 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCAS-GKRK-KDEISVD  411 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECS-SCCC-TTCEEGG
T ss_pred             ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCcccccc-CCcc-ccccccc
Confidence                     13459999999999999999999999999887532 1111110000 00000000000 0000 0000000


Q ss_pred             EEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          375 QFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       375 ~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                       .......+..++|+|+++.||+++.++
T Consensus       412 -~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          412 -SLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             -GCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             -ccccCCceeEEEECCCCCEEEEEecce
Confidence             001135688899999999999999876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-34  Score=261.45  Aligned_cols=269  Identities=12%  Similarity=0.087  Sum_probs=205.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--------CcEEEEEcCCCee--------EEEEecccCcceeEEEEeeeCCeEEE-----
Q 015650           86 PTLLHISFNQDHGCFAAGTD--------HGFRIYNCDPFRE--------IFRRDFERGGGIGVVEMLFRCNILAL-----  144 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~--------~~i~iw~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~-----  144 (403)
                      -+|++++|+|||++|++|+.        +.|++|+++....        .....+. .+...+.++.++.+..+.     
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALE-DNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECC-TTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEcc-CCCCceEEEEeCCCEEEEEECCC
Confidence            37999999999999999862        2399999875432        1223454 677778888887765443     


Q ss_pred             ----eeCCCCCCCCCceEEEEECCCCceeE----EEe------cCCceeEEEEecCceEEE-----ecCeEEEEEcCCce
Q 015650          145 ----VGGGPDPQYPLNKVMIWDDHQSRCIG----ELS------FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLK  205 (403)
Q Consensus       145 ----~s~~~d~~~~~~~i~iwd~~~~~~~~----~~~------~~~~i~~~~~~~~~~~~~-----~d~~i~i~d~~~~~  205 (403)
                          ++++.+     +.+++|++.......    ...      +...+..++|+|||++++     .|++|++||+++++
T Consensus        94 ~~~l~s~~~d-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~  168 (365)
T 4h5i_A           94 STKITQGKGN-----KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT  168 (365)
T ss_dssp             HHHHHHTSCC-----CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred             ccEEEEecCC-----CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence                334455     889999987653221    111      234588999999999875     27899999999999


Q ss_pred             eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee---EEeecCCceEEEEEcCCCCEEEEEeCCC--
Q 015650          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQLLATSSTKG--  280 (403)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~---~~~~~~~~i~~~~~sp~g~~l~s~~~dg--  280 (403)
                      ++..+. +...|..++|+|+++.  +++ + .++.+++|+..++...   ....|...|.+++|+|+++++++++.|+  
T Consensus       169 ~~~~~~-~~~~V~~v~fspdg~~--l~s-~-s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~  243 (365)
T 4h5i_A          169 EKFEIE-TRGEVKDLHFSTDGKV--VAY-I-TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK  243 (365)
T ss_dssp             EEEEEE-CSSCCCEEEECTTSSE--EEE-E-CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC
T ss_pred             EEEEeC-CCCceEEEEEccCCce--EEe-c-cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc
Confidence            988885 6678999999999874  343 2 2456777776664432   2346888999999999999999999887  


Q ss_pred             --cEEEEEEcCCCcE----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650          281 --TLVRIFNTLDGTL----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (403)
Q Consensus       281 --~~i~iwd~~~~~~----~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (403)
                        . +++||+.....    ...+.  .|...|++++|+|||++||+|+.|++|+|||+++++.                 
T Consensus       244 ~~~-i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~-----------------  303 (365)
T 4h5i_A          244 GIV-LTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM-----------------  303 (365)
T ss_dssp             CEE-EEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-----------------
T ss_pred             eeE-Eeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE-----------------
Confidence              5 88899876643    22344  3678999999999999999999999999999998873                 


Q ss_pred             ccccccccccceeeeeeeeEEE-EEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          355 SLSFIKGVLPKYFSSEWSVAQF-RLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                        +..+ ++|.+.|++|+|||||++||+|+.||+
T Consensus       304 ------------------~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          304 ------------------SKIFKQAHSFAITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             ------------------EEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             ------------------EEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence                              2222 567889999999999999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-35  Score=262.89  Aligned_cols=247  Identities=17%  Similarity=0.162  Sum_probs=195.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~  155 (403)
                      .++.+|.+.|++++|+|+|++||+|+ |+.|+|||+.+++......+. +|...|.+++|++  ++..|++++.|     
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D-----   80 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYD-----   80 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETT-----
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECC-----
Confidence            45678999999999999999999998 555999999877655556776 8999999999975  37788999998     


Q ss_pred             ceEEEEECCCCc--eeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCcee---eeEeeccCCCceeEEEee
Q 015650          156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       156 ~~i~iwd~~~~~--~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~  224 (403)
                      ++|++||+++++  .+..+. |...|.+++|+|+  +.+++   .|++|++||++.+..   ...+..|...+..++|+|
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            999999999874  455565 8999999999997  66666   499999999987532   344567788888999988


Q ss_pred             CCC---------------eEEEEeeCCccCeEEEEEccCC----ceeEEeecCCceEEEEEcCCC----CEEEEEeCCCc
Q 015650          225 GVG---------------SLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDG----QLLATSSTKGT  281 (403)
Q Consensus       225 ~~~---------------~~~~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~~i~~~~~sp~g----~~l~s~~~dg~  281 (403)
                      +..               ..++++ |+.|+.|++||++..    ....+.+|...|.+++|+|++    .+|++++.|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFAS-GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEEC-CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             ccCCccccccccccCccccceEEE-ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence            731               124554 568999999999753    345577899999999999986    89999999999


Q ss_pred             EEEEEEcCCC---c-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          282 LVRIFNTLDG---T-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       282 ~i~iwd~~~~---~-~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                       |+|||+.+.   + ....+..  |...|.+++|+|++++|++++.||.|+||+....
T Consensus       240 -v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          240 -VFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             -EEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             -EEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence             999998762   1 1223333  6689999999999999999999999999998743

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-35  Score=273.37  Aligned_cols=310  Identities=13%  Similarity=0.158  Sum_probs=226.0

Q ss_pred             ccCCCCCCeEEEEEcC-CCCEEEEEcCC-cEEEEEcCC---CeeE-EEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           80 TSSSPPPTLLHISFNQ-DHGCFAAGTDH-GFRIYNCDP---FREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~-d~~~l~~~~~~-~i~iw~~~~---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      ...+|.+.|++++|+| ++++|++|+.+ .|+||++.+   .... ....+  +|...|.+++|++++..+++++.|   
T Consensus        58 ~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~d---  132 (437)
T 3gre_A           58 LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPNFDAFAVSSKD---  132 (437)
T ss_dssp             ECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTTSSEEEEEETT---
T ss_pred             eccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCCCCEEEEEeCC---
Confidence            3388999999999999 99999999855 499999865   3211 11223  378899999999999999999999   


Q ss_pred             CCceEEEEECC---CCceeEEEe-------------cCCceeEEE--EecCceEEE---ecCeEEEEEcCCceeeeEeec
Q 015650          154 PLNKVMIWDDH---QSRCIGELS-------------FRSEVRSVK--LRRDRIIVV---LEQKIFVYNFADLKLLHQIET  212 (403)
Q Consensus       154 ~~~~i~iwd~~---~~~~~~~~~-------------~~~~i~~~~--~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~  212 (403)
                        |.|++||+.   +++.+..+.             +...+.++.  +++++.+++   .|+.|++||+++++.+..+..
T Consensus       133 --g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          133 --GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             --SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             --CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence              999999995   555544333             234455555  446777777   489999999999999999987


Q ss_pred             --cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee-EEe-ecCCceEEEEEc----CCCCEEEEEeCCCcEEE
Q 015650          213 --IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM-AHDSRIACFALT----QDGQLLATSSTKGTLVR  284 (403)
Q Consensus       213 --~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~~-~~~~~i~~~~~s----p~g~~l~s~~~dg~~i~  284 (403)
                        |...+..++|+|+++.  +++ |+.||.|++||++.+... .+. .|...|.+++|+    |++.+|++++.|+. |+
T Consensus       211 ~~h~~~v~~~~~s~~~~~--l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~  286 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCV--LIL-GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LT  286 (437)
T ss_dssp             CGGGCCEEEEEECTTSCE--EEE-EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EE
T ss_pred             CCCCCceEEEEECCCCCE--EEE-EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EE
Confidence              7889999999998764  343 348999999999986654 444 778899999665    46889999999999 99


Q ss_pred             EEEcCCCcEEEEEecCC------------------------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650          285 IFNTLDGTLLQEVRRGA------------------------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       285 iwd~~~~~~~~~~~~~~------------------------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~  340 (403)
                      +||+++++++..+..+.                        |...|++++|+ ++++|++++.||.|++||+.+++....
T Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred             EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence            99999999998887532                        55679999999 789999999999999999999987655


Q ss_pred             CCCCCCCCCCCc----ccccccccccccceeeeeeeeEEEEEeCCCceEEEeccC--CCEEEEEccCCC
Q 015650          341 SEPRSTSDPTLP----TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ--KNTVVILGMDGR  403 (403)
Q Consensus       341 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d--~~~l~~~~~dG~  403 (403)
                      +.++........    .....++...+..  ...........|.+.|++++|+++  +..|++|+.||+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~  432 (437)
T 3gre_A          366 VISPSRFSDVFIPTQVTANLTMLLRKMKR--TSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL  432 (437)
T ss_dssp             EECC--CCCEEEEEEEETTEEEEEEECC---------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred             EecccccCceEEEEEeecceEEEEEeccc--ccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence            543322111000    0000000000000  000011224458889999999998  889999999995

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.1e-35  Score=264.33  Aligned_cols=273  Identities=14%  Similarity=0.075  Sum_probs=222.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-EEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCCCCc
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLN  156 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~  156 (403)
                      +..+|.+.|++++|+|++++|++++ ++.|+||++..... .....+. .|...+.++.|++++. .+++++.+     |
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d-----g   79 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQ-----G   79 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETT-----S
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCC-----C
Confidence            4568999999999999999999988 45599999987661 1112233 5888999999999998 89999888     9


Q ss_pred             eEEEEEC-CCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCC---------ceeeeEeeccCCCceeEE
Q 015650          157 KVMIWDD-HQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD---------LKLLHQIETIANPKGLCA  221 (403)
Q Consensus       157 ~i~iwd~-~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~  221 (403)
                      .|++||+ .+++......  |...|.+++|+| +.+++   .|+.|++||+++         ++.+..+. +...+..++
T Consensus        80 ~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  157 (342)
T 1yfq_A           80 EILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD  157 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred             eEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence            9999999 8887655445  889999999999 66666   489999999988         77777666 777888888


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccC-Cce---eEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCC-----
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-----  291 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~---~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~-----  291 (403)
                      ++++.    +++ ++.++.|++||++. ...   .....|...+.+++|+| ++++|++++.||. |++|++...     
T Consensus       158 ~~~~~----l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          158 TNSSR----LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYN  231 (342)
T ss_dssp             ECSSE----EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTT
T ss_pred             ecCCc----EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCcccc
Confidence            88764    332 34789999999987 432   24456888999999999 9999999999999 999999876     


Q ss_pred             -cEEEEEecCC-------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccc
Q 015650          292 -TLLQEVRRGA-------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (403)
Q Consensus       292 -~~~~~~~~~~-------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (403)
                       +.+..+..+.       |...|.+++|+|++++|++++.||.|++||+.+++.                          
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--------------------------  285 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK--------------------------  285 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE--------------------------
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH--------------------------
Confidence             7777787632       134899999999999999999999999999998773                          


Q ss_pred             cceeeeeeeeEEEEEe-CCCceEEEeccCCCEEEEEccCCC
Q 015650          364 PKYFSSEWSVAQFRLV-EGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       364 ~~~~~~~~~~~~~~~~-~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                               +..+..| .+.+..++  |++++|++++.||+
T Consensus       286 ---------~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          286 ---------IKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             ---------EEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ---------hhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence                     2334555 67888888  99999999999984

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.9e-34  Score=287.57  Aligned_cols=249  Identities=13%  Similarity=0.173  Sum_probs=216.1

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ...+.+|.+.|.+++|+|++++|++++.++ |+||++.+++..  ..+. +|...|.++.|++++..+++++.|     |
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-----g   77 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGSDD-----F   77 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEETT-----S
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE--EEEe-cCCCcEEEEEEeCCCCEEEEEeCC-----C
Confidence            456788999999999999999999998555 999999887765  5565 688999999999999999999988     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc-eeeeEeeccCCCceeEEEee-CCCeEE
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQ-GVGSLV  230 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~  230 (403)
                      .|++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+.++ .....+..|...+..++|+| +++.  
T Consensus        78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~--  155 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST--  155 (814)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE--
T ss_pred             eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE--
Confidence            99999999999999998 999999999999998777   3899999999886 67778888999999999999 4442  


Q ss_pred             EEeeCCccCeEEEEEccCCc-eeEEee-cCCceEEEEEcC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccE
Q 015650          231 LVCPGLQKGQVRVEHYASKR-TKFIMA-HDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~-~~~~~~-~~~~i~~~~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (403)
                      +++ ++.|+.|++||++... ...+.. +...+.+++|+|  ++.+|++++.||. |++||+.+++.+..+..  |...|
T Consensus       156 l~~-~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v  231 (814)
T 3mkq_A          156 FAS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNV  231 (814)
T ss_dssp             EEE-EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEEC--CSSCE
T ss_pred             EEE-EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcC--CCCCE
Confidence            333 3489999999998744 334444 448899999999  9999999999999 99999999999988886  66899


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~  340 (403)
                      .+++|+|++++|++++.||.|++||+.+++....
T Consensus       232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  265 (814)
T 3mkq_A          232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT  265 (814)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            9999999999999999999999999998775433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-35  Score=274.40  Aligned_cols=277  Identities=12%  Similarity=0.090  Sum_probs=215.3

Q ss_pred             ccCCCCCCeEEEEEcC-CCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCc
Q 015650           80 TSSSPPPTLLHISFNQ-DHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLN  156 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~-d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~  156 (403)
                      ...+|...|+||+|+| ++.+||+|+.+ .|+|||+.+.+......+. +|...|.++.|+| ++..|++++.|     |
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D-----~  187 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSME-----G  187 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSS-----S
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCC-----C
Confidence            3456888999999999 56789999855 5999999877665545565 7999999999997 67889999999     9


Q ss_pred             eEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          157 KVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      +|++||++++.......   +...+.+++|++++.+++   .|+.|++||++ ++.+..+..|...|..++|+|+++.++
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence            99999998765433333   344678999999998888   48999999986 466777888999999999999987654


Q ss_pred             EEeeCCccCeEEEEEccCCc----eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc---
Q 015650          231 LVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---  303 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~----~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~---  303 (403)
                      +.  ++.|+.|++||++...    .....+|...|.+++|+|+|++|++++.|+. |+|||+.+++....+..+.+.   
T Consensus       267 ~s--~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~  343 (435)
T 4e54_B          267 AT--ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQ  343 (435)
T ss_dssp             EE--EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCS
T ss_pred             EE--ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccc
Confidence            33  3589999999998733    2334679999999999999999999999999 999999999888777653221   


Q ss_pred             -ccEEEEEeCCCCCEEEEEe------------CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeee
Q 015650          304 -AEIYSLAFSSNAQWLAVSS------------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSE  370 (403)
Q Consensus       304 -~~v~~l~~s~d~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (403)
                       ..+....|+|++.+++++.            .++.|++||+.+++.                                 
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~---------------------------------  390 (435)
T 4e54_B          344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM---------------------------------  390 (435)
T ss_dssp             SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE---------------------------------
T ss_pred             cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE---------------------------------
Confidence             1234567777777777664            345799999988873                                 


Q ss_pred             eeeEEE-EEeCCCceEE-EeccCCCEEEEEccCC
Q 015650          371 WSVAQF-RLVEGSPYIV-AFGHQKNTVVILGMDG  402 (403)
Q Consensus       371 ~~~~~~-~~~~~~~~~~-~fs~d~~~l~~~~~dG  402 (403)
                        +.++ ..|...|.++ +|+|+|++|++|+ ||
T Consensus       391 --~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~  421 (435)
T 4e54_B          391 --MCQLYDPESSGISSLNEFNPMGDTLASAM-GY  421 (435)
T ss_dssp             --EEEECCSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred             --EEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence              1122 2334566665 7999999999887 54

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-34  Score=256.24  Aligned_cols=249  Identities=16%  Similarity=0.170  Sum_probs=201.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      ...+|...|.+++|+|+|++|++|+ |+.|+||++..........+. +|...|.+++|++++..+++++.|     +.|
T Consensus        56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D-----~~v  129 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRD-----KSV  129 (345)
T ss_dssp             ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred             eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECC-----CeE
Confidence            3468999999999999999999998 555999999877655556776 799999999999999999999999     999


Q ss_pred             EEEECCCCc---eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCce--eeeEeeccCCCceeEEEeeCCCeE
Q 015650          159 MIWDDHQSR---CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       159 ~iwd~~~~~---~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      ++||+.++.   .+..+. |...|.+++|+|++.+++   .|++|++||+++++  +...+.+|...+..++|+|+++. 
T Consensus       130 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~-  208 (345)
T 3fm0_A          130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-  208 (345)
T ss_dssp             EEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE-
T ss_pred             EEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE-
Confidence            999998764   344555 889999999999998887   48999999998765  45678889999999999999874 


Q ss_pred             EEEeeCCccCeEEEEEccCC----------------ceeEEee-cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650          230 VLVCPGLQKGQVRVEHYASK----------------RTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~----------------~~~~~~~-~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (403)
                       +++ ++.|+.|++||....                .+..+.+ |...|.+++|+|++.+|++++.|+. |++|+...+.
T Consensus       209 -l~s-~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~  285 (345)
T 3fm0_A          209 -LAS-CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNS  285 (345)
T ss_dssp             -EEE-EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTS
T ss_pred             -EEE-EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCC
Confidence             444 458999999997431                1122333 8889999999999999999999999 9999987542


Q ss_pred             ----EEEEE---ecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCC
Q 015650          293 ----LLQEV---RRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       293 ----~~~~~---~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                          ....+   ....|...|++++|+|++ .+|++|+.||+|++|++.+++..
T Consensus       286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             CTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             CcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence                11111   112378899999999998 49999999999999999998853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.5e-34  Score=262.55  Aligned_cols=267  Identities=14%  Similarity=0.144  Sum_probs=224.5

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      ++.|+|+++ .+||+|.|+.|+|||..+++......+. +|...|.+++|++++.++++++.|     |.|+|||+.+++
T Consensus       108 ~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~-~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~  180 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQK  180 (420)
T ss_dssp             CBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE
T ss_pred             ceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEec-CCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCc
Confidence            567999975 5899999999999999998876555554 678899999999999999999999     999999999999


Q ss_pred             eeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650          168 CIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (403)
Q Consensus       168 ~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~  244 (403)
                      .+..+. |...+.++.+++.-.... .|+.+++||... ...+..+..|...+..+.+++++..  +++ +..|+.+++|
T Consensus       181 ~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~--l~s-~~~D~~v~i~  257 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH--LAS-GGNDNLVNVW  257 (420)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE--EEE-EETTSCEEEE
T ss_pred             EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCe--eee-eeccccceEE
Confidence            999998 899999888865432222 489999999886 4556778889999999999998874  343 3489999999


Q ss_pred             EccCCc-----eeEEeecCCceEEEEEcCCCC-EEEE--EeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 015650          245 HYASKR-----TKFIMAHDSRIACFALTQDGQ-LLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (403)
Q Consensus       245 d~~~~~-----~~~~~~~~~~i~~~~~sp~g~-~l~s--~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  316 (403)
                      +...+.     ......|...|.+++|+|++. ++++  |+.|+. |+|||+.+++++..+..   ...+.++.|+++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~  333 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSPHYK  333 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEETTTT
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecCCCC
Confidence            998743     456678999999999999654 5554  457999 99999999999998884   46899999999999


Q ss_pred             EEEEEe--CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCE
Q 015650          317 WLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT  394 (403)
Q Consensus       317 ~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~  394 (403)
                      .|++++  .|+.|+|||+.+++.                                   +..+++|.+.|++++|+|||++
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~-----------------------------------v~~l~gH~~~V~~l~~spdg~~  378 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAK-----------------------------------VAELKGHTSRVLSLTMSPDGAT  378 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEEECTTSSC
T ss_pred             eEEEEEecCCCEEEEEECCCCcE-----------------------------------EEEEcCCCCCEEEEEEcCCCCE
Confidence            988765  799999999998873                                   4557888999999999999999


Q ss_pred             EEEEccCCC
Q 015650          395 VVILGMDGR  403 (403)
Q Consensus       395 l~~~~~dG~  403 (403)
                      |++|+.||+
T Consensus       379 l~S~s~D~t  387 (420)
T 4gga_A          379 VASAAADET  387 (420)
T ss_dssp             EEEEETTTE
T ss_pred             EEEEecCCe
Confidence            999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=256.70  Aligned_cols=242  Identities=18%  Similarity=0.286  Sum_probs=189.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCC-----eeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF-----REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      +|...|.+++|+|++++|++|+ |+.|+||++...     .......+. +|...|.+++|++++.++++++.|     +
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D-----~  129 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRD-----K  129 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT-----S
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCC-----C
Confidence            4999999999999999999998 555999998532     122335565 799999999999999999999999     9


Q ss_pred             eEEEEECCCC----ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc--eeeeEeeccCCCceeEEEeeCC
Q 015650          157 KVMIWDDHQS----RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       157 ~i~iwd~~~~----~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~  226 (403)
                      .|++||+...    +++..+. |...|.+++|+|++.+++   .|++|++||+.++  +++..+.+|...+..++|++++
T Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  209 (330)
T 2hes_X          130 SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE  209 (330)
T ss_dssp             CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS
T ss_pred             EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC
Confidence            9999999432    4566666 899999999999998888   4899999998776  6788889999999999999986


Q ss_pred             CeEEEEeeCCccCeEEEEEccCC---------ceeEEee-cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc--EE
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASK---------RTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LL  294 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~---------~~~~~~~-~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~--~~  294 (403)
                      ...++++ |+.|+.|++||++..         ....+.. |...|.+++|++++ +|++++.||. |+|||..+++  .+
T Consensus       210 ~~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~~~~  286 (330)
T 2hes_X          210 GVFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEWKVF  286 (330)
T ss_dssp             SSCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEEEEE
T ss_pred             CeeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCceEEE
Confidence            5545555 458999999998763         1222333 88999999999765 7899999999 9999998774  23


Q ss_pred             EEEecCCCcc-cEEEEEeCC--CCCEEEEEeCCCcEEEEEeec
Q 015650          295 QEVRRGADRA-EIYSLAFSS--NAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       295 ~~~~~~~~~~-~v~~l~~s~--d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      .... ..|.. .|.+++|+|  ++++|++|+.||+|+||++++
T Consensus       287 ~~~~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          287 AKRA-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEES-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eccc-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            2322 22555 899999999  789999999999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.2e-34  Score=264.14  Aligned_cols=277  Identities=10%  Similarity=0.089  Sum_probs=218.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC
Q 015650           86 PTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      ..+....|++++++|++|+.+ .|+||++.+.+..  ..+. +|...|.++.|++++..+++++.|     +.|++||+.
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~  169 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--EIDQ-AHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVK  169 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--EETT-SSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee--eecc-cccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCC
Confidence            445555789999999999855 5999999876654  5555 799999999999999999999999     999999999


Q ss_pred             CCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeec---cCCCceeEEE---------------
Q 015650          165 QSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET---IANPKGLCAV---------------  222 (403)
Q Consensus       165 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~---------------  222 (403)
                      +++.+..+. |...|.+++|+|++.+++   .|++|++||+++++.+..+..   +...+..+++               
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence            999999998 999999999999998877   489999999999998888864   3334444444               


Q ss_pred             ------eeCCCeEEEEeeCCccCeEEEEEccCCcee-EE-eecCCceEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCcE
Q 015650          223 ------SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       223 ------~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~-~~~~~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~  293 (403)
                            +++++  ++++ |+.||.|++||++++... .+ ..|...|.+++|+|++. +|++++.||. |++||+++++.
T Consensus       250 v~~~~~s~~~~--~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~  325 (420)
T 3vl1_A          250 KNNLEFGTYGK--YVIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPEC  325 (420)
T ss_dssp             CCTTCSSCTTE--EEEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTS
T ss_pred             ccceEEcCCCC--EEEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcC
Confidence                  45544  4444 458999999999886543 33 35788999999999999 9999999999 99999998754


Q ss_pred             -EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeee
Q 015650          294 -LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS  372 (403)
Q Consensus       294 -~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (403)
                       +..+..+ |...|.++.| +++++|++++.||.|++|++...+......                          ....
T Consensus       326 ~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--------------------------~~~~  377 (420)
T 3vl1_A          326 PVGEFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAI--------------------------EFET  377 (420)
T ss_dssp             CSEEEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEE--------------------------CTTS
T ss_pred             chhhhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccce--------------------------eccC
Confidence             6677654 6678888866 578899999999999999999865321110                          0000


Q ss_pred             eEEEEEeCCCceEEEeccCCC---EEEEEccCC
Q 015650          373 VAQFRLVEGSPYIVAFGHQKN---TVVILGMDG  402 (403)
Q Consensus       373 ~~~~~~~~~~~~~~~fs~d~~---~l~~~~~dG  402 (403)
                      ...+..+.+.+..++|+|+++   .|++++.+|
T Consensus       378 ~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g  410 (420)
T 3vl1_A          378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN  410 (420)
T ss_dssp             CEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred             ccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence            122456678899999999999   677777666

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-35  Score=276.91  Aligned_cols=308  Identities=9%  Similarity=-0.037  Sum_probs=215.9

Q ss_pred             CCCCeEEEEEcCCC---------CEEEEEc--------------------CCcEEEEEcCCCeeEE--EEecccCcceeE
Q 015650           84 PPPTLLHISFNQDH---------GCFAAGT--------------------DHGFRIYNCDPFREIF--RRDFERGGGIGV  132 (403)
Q Consensus        84 ~~~~i~~i~~s~d~---------~~l~~~~--------------------~~~i~iw~~~~~~~~~--~~~~~~~~~~~v  132 (403)
                      +.+.|.+|+|+|++         ++||+|.                    |+.|+||++.+.+...  ...+. +|...|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEV  210 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE-ECCCSE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcE
Confidence            57889999999986         6777754                    2349999997765322  12343 566789


Q ss_pred             EEEeeeCC------eEEEeeCCCCCCCCCceEEEEECCCCce-----------eEEEe-cCCceeEEEEecCceEEE--e
Q 015650          133 VEMLFRCN------ILALVGGGPDPQYPLNKVMIWDDHQSRC-----------IGELS-FRSEVRSVKLRRDRIIVV--L  192 (403)
Q Consensus       133 ~~~~~~~~------~~~~~s~~~d~~~~~~~i~iwd~~~~~~-----------~~~~~-~~~~i~~~~~~~~~~~~~--~  192 (403)
                      ..++|+|+      +..|++++.|     |+|++||+.+++.           ...+. |...|.+++|++++.++.  .
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~D-----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~  285 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQE-----GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK  285 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETT-----SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET
T ss_pred             EEEEECCCCCCCCCCceEEEEecC-----CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC
Confidence            99999986      5689999988     9999999987642           23455 889999999998875544  4


Q ss_pred             cCeEEEEEcCCce-eeeEeeccCCCceeEE--EeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCC--ceEEEEE
Q 015650          193 EQKIFVYNFADLK-LLHQIETIANPKGLCA--VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS--RIACFAL  266 (403)
Q Consensus       193 d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~--~i~~~~~  266 (403)
                      ||+|++||+++++ ....+..|...|..++  +++++.. ++++ ++.|++|+|||+++.. ...+.+|..  .|.+++|
T Consensus       286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~-~laS-~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT-VVST-VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC-EEEE-EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred             CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe-EEEE-eccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence            9999999999764 4556888999999884  4555423 4454 4589999999998844 345566653  5889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCC-
Q 015650          267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS-  345 (403)
Q Consensus       267 sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-  345 (403)
                      +|+++.|++++.|++ |++||++++.++..+.+  |...|++|+|+|+|++|++|+.||+|++||+... ......... 
T Consensus       364 sp~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~  439 (524)
T 2j04_B          364 CPQIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSA  439 (524)
T ss_dssp             ETTTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC-----
T ss_pred             CCCcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCcc
Confidence            999999999999999 99999999998888876  7789999999999999999999999999998654 222111000 


Q ss_pred             C-------CCCCCcccc-cccccccccceee-eeeeeEEEEEeCCCceEEEeccCCC---EEEEEccCCC
Q 015650          346 T-------SDPTLPTSS-LSFIKGVLPKYFS-SEWSVAQFRLVEGSPYIVAFGHQKN---TVVILGMDGR  403 (403)
Q Consensus       346 ~-------~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fs~d~~---~l~~~~~dG~  403 (403)
                      .       ....+++.. ..+.......... .......+..|++.|.+|+|+|+++   .|++|+.||+
T Consensus       440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~  509 (524)
T 2j04_B          440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL  509 (524)
T ss_dssp             -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred             ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence            0       011111111 0010100000011 1223455778889999999999964   9999999984

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.9e-34  Score=256.09  Aligned_cols=241  Identities=13%  Similarity=0.177  Sum_probs=204.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee----EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      .....|...|.+++|+|+|.+|++|+ |+.+++|++.....    .....+. .|...+..+.|++++..+++++.|   
T Consensus       100 ~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D---  175 (354)
T 2pbi_B          100 HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTASGD---  175 (354)
T ss_dssp             EEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETT---
T ss_pred             eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEeCC---
Confidence            44566888999999999999999998 55599999854311    1112333 588899999999999889999998   


Q ss_pred             CCceEEEEECCCCceeEEEe-cCCceeEEEEec--CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~--~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                        ++|++||+++++.+..+. |...|.+++|+|  ++.+++   .|++|++||+++++++..+..|...+..++|+|+++
T Consensus       176 --~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~  253 (354)
T 2pbi_B          176 --GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD  253 (354)
T ss_dssp             --SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             --CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC
Confidence              999999999999999998 899999999987  456666   499999999999999999999999999999999887


Q ss_pred             eEEEEeeCCccCeEEEEEccCCceeEE-ee--cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTKFI-MA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~-~~--~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (403)
                      .  +++ ++.|+.|++||++....... ..  +...+.+++|+|+|++|++|+.|+. |++||+.+++.+..+.+  |..
T Consensus       254 ~--l~s-~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~l~~--h~~  327 (354)
T 2pbi_B          254 A--FAS-GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLKGSRVSILFG--HEN  327 (354)
T ss_dssp             E--EEE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEECC--CSS
T ss_pred             E--EEE-EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCCCceEEEEEC--CCC
Confidence            4  444 34899999999998654433 32  2347899999999999999999999 99999999999888875  778


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          305 EIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      .|++++|+|||++|++|+.||+|+||+
T Consensus       328 ~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          328 RVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999999995

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-33  Score=255.64  Aligned_cols=273  Identities=12%  Similarity=0.084  Sum_probs=222.5

Q ss_pred             CCCCC--eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           83 SPPPT--LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        83 ~~~~~--i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      +|...  +.++.|++ +.+++++.++.|++|++.+++.......  .|...|.+++|++++..+++++.+     |.|++
T Consensus        89 ~~~~~~~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~i  160 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAET--DESTYVASVKWSHDGSFLSVGLGN-----GLVDI  160 (401)
T ss_dssp             TCCCCTTCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEEC--CTTCCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred             CCcCCceEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeec--CCCCCEEEEEECCCCCEEEEECCC-----CeEEE
Confidence            45444  55577775 4455555677799999998876643333  478899999999999999999988     99999


Q ss_pred             EECCCCceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcC-CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       161 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      ||+.+++.+..+. |...|.+++|+++..... .|+.|++||++ ....+..+..|...+..++|++++..  +++ ++.
T Consensus       161 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s-~~~  237 (401)
T 4aez_A          161 YDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ--LAS-GGN  237 (401)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE--EEE-EET
T ss_pred             EECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCE--EEE-EeC
Confidence            9999999999998 999999999965433333 58999999998 46677888889999999999998764  343 348


Q ss_pred             cCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCC-EEEEEe--CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQ-LLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       238 d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~-~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      |+.|++||++... ...+..|...|.+++|+|++. ++++++  .|+. |++||+.+++++..+.   +...|.+++|+|
T Consensus       238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~s~  313 (401)
T 4aez_A          238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVD---AGSQVTSLIWSP  313 (401)
T ss_dssp             TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEECS
T ss_pred             CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEe---CCCcEEEEEECC
Confidence            9999999999855 456678999999999999764 556654  7999 9999999999999887   557899999999


Q ss_pred             CCCEEEEEe--CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccC
Q 015650          314 NAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (403)
Q Consensus       314 d~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d  391 (403)
                      ++++|++++  .||.|++||+.+++..                                 ....+..|.+.+..++|+|+
T Consensus       314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~---------------------------------~~~~~~~h~~~v~~~~~s~d  360 (401)
T 4aez_A          314 HSKEIMSTHGFPDNNLSIWSYSSSGLT---------------------------------KQVDIPAHDTRVLYSALSPD  360 (401)
T ss_dssp             SSSEEEEEECTTTCEEEEEEEETTEEE---------------------------------EEEEEECCSSCCCEEEECTT
T ss_pred             CCCeEEEEeecCCCcEEEEecCCccce---------------------------------eEEEecCCCCCEEEEEECCC
Confidence            999999954  8999999999986520                                 12235677889999999999


Q ss_pred             CCEEEEEccCCC
Q 015650          392 KNTVVILGMDGR  403 (403)
Q Consensus       392 ~~~l~~~~~dG~  403 (403)
                      +++|++++.||+
T Consensus       361 g~~l~s~~~dg~  372 (401)
T 4aez_A          361 GRILSTAASDEN  372 (401)
T ss_dssp             SSEEEEECTTSE
T ss_pred             CCEEEEEeCCCc
Confidence            999999999984

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.4e-35  Score=268.35  Aligned_cols=268  Identities=10%  Similarity=0.077  Sum_probs=216.2

Q ss_pred             CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~  165 (403)
                      .+++++|+|++++|++++ ++.|++|++.+.+..  ..+. .+ ..+....+++++..+++++.|     +.|++||+.+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  128 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS--KMLK-RA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNF  128 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT--TTSC-SC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTTS
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccccee--eEEe-cC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCCC
Confidence            355789999999999998 556999998765443  3343 23 344445678899899999988     9999999999


Q ss_pred             CceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650          166 SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (403)
Q Consensus       166 ~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (403)
                      ++....+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..++|+|+++.+  ++ ++.|+.|
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l--~s-~~~d~~v  205 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV--LS-ASLDGTI  205 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEE--EE-EETTSCE
T ss_pred             cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEE--EE-EcCCCcE
Confidence            98888875 999999999999998887   48999999999999999999999999999999998744  33 3489999


Q ss_pred             EEEEccCCce-eEEee---cCCce---------------------EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650          242 RVEHYASKRT-KFIMA---HDSRI---------------------ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (403)
Q Consensus       242 ~v~d~~~~~~-~~~~~---~~~~i---------------------~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (403)
                      ++||+++++. ..+..   |...+                     .+++|+|++++|++++.||. |++||+++++.+..
T Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQ  284 (420)
T ss_dssp             EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEEE
T ss_pred             EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeEE
Confidence            9999988554 33432   33344                     44555789999999999999 99999999998888


Q ss_pred             EecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEE
Q 015650          297 VRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ  375 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (403)
                      +... |...|.+++|+|+++ +|++++.||.|++||+++++..                                  +..
T Consensus       285 ~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~----------------------------------~~~  329 (420)
T 3vl1_A          285 LPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP----------------------------------VGE  329 (420)
T ss_dssp             ECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------------------------------SEE
T ss_pred             cccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc----------------------------------hhh
Confidence            7653 678999999999999 9999999999999999987631                                  223


Q ss_pred             EEE-eCCCceEEEeccCCCEEEEEccCCC
Q 015650          376 FRL-VEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       376 ~~~-~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      +.. +...+..+ +.+++++|++++.||+
T Consensus       330 ~~~~~~~~v~~~-~~~~~~~l~s~~~d~~  357 (420)
T 3vl1_A          330 FLINEGTPINNV-YFAAGALFVSSGFDTS  357 (420)
T ss_dssp             EEESTTSCEEEE-EEETTEEEEEETTTEE
T ss_pred             hhccCCCCceEE-EeCCCCEEEEecCCcc
Confidence            455 34566666 4568899999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4e-34  Score=250.92  Aligned_cols=236  Identities=12%  Similarity=0.160  Sum_probs=193.5

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC--CceeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEE
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--SRCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFV  198 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~--~~~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i  198 (403)
                      +|...|.+++|++++..+++++.|     ++|+|||+..  .+.+..+. |...|.+++|+++  +.+++   .|++|++
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             CCcCceEEEEECCCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            789999999999999999999999     9999999874  36777887 9999999999863  67776   4999999


Q ss_pred             EEcCCce--eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc---eeEEeecCCceEEEEEcCC----
Q 015650          199 YNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQD----  269 (403)
Q Consensus       199 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~---~~~~~~~~~~i~~~~~sp~----  269 (403)
                      ||+++++  .+..+..|...+..++|+|+....++++ ++.|+.|++||++...   ...+.+|...|.+++|+|+    
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            9998874  5566778889999999999742224444 4589999999998742   4567889999999999997    


Q ss_pred             ---------CCEEEEEeCCCcEEEEEEcCCCc----EEEEEecCCCcccEEEEEeCCCC---CEEEEEeCCCcEEEEEee
Q 015650          270 ---------GQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSNA---QWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       270 ---------g~~l~s~~~dg~~i~iwd~~~~~----~~~~~~~~~~~~~v~~l~~s~d~---~~l~s~~~dg~v~iwd~~  333 (403)
                               +++|++|+.|+. |+|||+++++    ....+.+  |...|.+++|+|++   .+|++++.|++|+|||++
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ---------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                     579999999999 9999998766    5556664  77899999999995   899999999999999998


Q ss_pred             cCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEE--EEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF--RLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      +.+...                                ....+  ..+.+.+..++|+|+|++|++++.||+
T Consensus       238 ~~~~~~--------------------------------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~  277 (297)
T 2pm7_B          238 NEQGPW--------------------------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (297)
T ss_dssp             STTSCC--------------------------------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             CCCCcc--------------------------------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence            754200                                00001  234567899999999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=272.07  Aligned_cols=273  Identities=12%  Similarity=0.168  Sum_probs=222.4

Q ss_pred             CCCCeEEEEEcCCCC-EEEEE----------c-CCcEEEEEcCCCeeE-EEEecccCcceeEEEEeeeCCeEEEeeCCCC
Q 015650           84 PPPTLLHISFNQDHG-CFAAG----------T-DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~-~l~~~----------~-~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  150 (403)
                      +...|.+++|+|+++ +|++|          + |+.|+||++.+.... ....+  .|...+.++.|++++.++++++.|
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d   88 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDN   88 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEESS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEccC
Confidence            335788999999997 89998          5 445999999876532 11333  478899999999999999999888


Q ss_pred             CCCCCceEEEEECCC----CceeEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCce------eeeE---eec
Q 015650          151 PQYPLNKVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLK------LLHQ---IET  212 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~----~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~~------~~~~---~~~  212 (403)
                           |.|++||+.+    .+.+..+. |...|.+++|+|+ +.+++   .|+.|++||+++++      ....   +..
T Consensus        89 -----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  163 (416)
T 2pm9_A           89 -----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS  163 (416)
T ss_dssp             -----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred             -----CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence                 9999999987    34667776 9999999999998 66666   48999999999876      3322   356


Q ss_pred             cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeec------CCceEEEEEcCCC-CEEEEEeCCC---c
Q 015650          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAH------DSRIACFALTQDG-QLLATSSTKG---T  281 (403)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~------~~~i~~~~~sp~g-~~l~s~~~dg---~  281 (403)
                      |...+..++|++++..++++  ++.|+.|++||++.+.. ..+..+      ...|.+++|+|++ .+|++++.|+   .
T Consensus       164 ~~~~v~~~~~~~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          164 SVDEVISLAWNQSLAHVFAS--AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             SSCCCCEEEECSSCTTEEEE--ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             CCCCeeEEEeCCCCCcEEEE--EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            78889999999985554333  35899999999998654 444444      7889999999997 6899999998   9


Q ss_pred             EEEEEEcCCC-cEEEEEe-cCCCcccEEEEEeCC-CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccc
Q 015650          282 LVRIFNTLDG-TLLQEVR-RGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (403)
Q Consensus       282 ~i~iwd~~~~-~~~~~~~-~~~~~~~v~~l~~s~-d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (403)
                       |++||++++ +.+..+. .  |...|.+++|+| ++++|++++.||.|++||+++++.                     
T Consensus       242 -i~~~d~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~---------------------  297 (416)
T 2pm9_A          242 -ILIWDLRNANTPLQTLNQG--HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ---------------------  297 (416)
T ss_dssp             -CCEEETTSTTSCSBCCCSC--CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE---------------------
T ss_pred             -EEEEeCCCCCCCcEEeecC--ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc---------------------
Confidence             999999986 5555555 3  678999999999 999999999999999999998763                     


Q ss_pred             ccccccceeeeeeeeEEEEEeCCCceEEEeccCC-CEEEEEccCCC
Q 015650          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGR  403 (403)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~-~~l~~~~~dG~  403 (403)
                                    +..+..|.+.+..++|+|++ ++|++++.||+
T Consensus       298 --------------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          298 --------------LSQFPARGNWCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             --------------EEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred             --------------ceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence                          44467788899999999999 89999999984

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9e-34  Score=253.78  Aligned_cols=248  Identities=14%  Similarity=0.204  Sum_probs=203.9

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee--EEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQ  152 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~  152 (403)
                      +.++.+|.+.|++++|+|++++|++|+.++ |+||++.+...  .....+. +|...|.++.|++  ++..+++++.|  
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~d--   80 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYD--   80 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETT--
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCC--
Confidence            456789999999999999999999998555 99999986532  2335555 7889999999998  58888998888  


Q ss_pred             CCCceEEEEECCCC---------ceeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCceeeeEee------
Q 015650          153 YPLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKLLHQIE------  211 (403)
Q Consensus       153 ~~~~~i~iwd~~~~---------~~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~~~~~~~~------  211 (403)
                         |.|++||+.++         +.+..+. |...|.+++|+|+  +.+++   .|+.|++||+++++.+..+.      
T Consensus        81 ---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           81 ---KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             ---SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             ---CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence               99999999887         4466666 8999999999998  87777   48999999999876554433      


Q ss_pred             -------ccCCCceeEEEeeC---CCeEEEEeeCCccCeEEEEEccCCc---eeEEeecCCceEEEEEcCCC----CEEE
Q 015650          212 -------TIANPKGLCAVSQG---VGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDG----QLLA  274 (403)
Q Consensus       212 -------~~~~~~~~~~~~~~---~~~~~~~~~g~~d~~i~v~d~~~~~---~~~~~~~~~~i~~~~~sp~g----~~l~  274 (403)
                             .+...+..++++|+   ++  ++++ ++.++.+.+|+...+.   ...+.+|...|.+++|+|++    ++|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~--~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~  234 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPE--KLAV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA  234 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCC--EEEE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred             ccccccCCcccceeEEEeccCCCCCc--EEEE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence                   45667888999987   44  3333 3478888888877755   44566899999999999998    8999


Q ss_pred             EEeCCCcEEEEEEcCCC----------------------------------------------cEEEEEecCCCcccEEE
Q 015650          275 TSSTKGTLVRIFNTLDG----------------------------------------------TLLQEVRRGADRAEIYS  308 (403)
Q Consensus       275 s~~~dg~~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~  308 (403)
                      +++.||. |++||+.++                                              +.+..+..  |...|++
T Consensus       235 s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~  311 (351)
T 3f3f_A          235 TGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWS  311 (351)
T ss_dssp             EEETTSC-EEEEEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEE
T ss_pred             EEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEE
Confidence            9999999 999999764                                              45555554  7789999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ++|+|++++|++++.||.|+||++++++.
T Consensus       312 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          312 VSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             EEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             EEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence            99999999999999999999999998874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=256.08  Aligned_cols=248  Identities=15%  Similarity=0.156  Sum_probs=206.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC--eEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~  155 (403)
                      .++.+|.+.|++++|+|++++|++|+. +.|+||++..........+. +|...|.++.|+++  +..+++++.|     
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d-----   78 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----   78 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccC-----
Confidence            467889999999999999999999984 45999999866655556776 78999999999876  8889999988     


Q ss_pred             ceEEEEECCCCc--eeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCce--eeeEeeccCCCceeEEEeeC
Q 015650          156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQG  225 (403)
Q Consensus       156 ~~i~iwd~~~~~--~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~  225 (403)
                      |.|++||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||++++.  ....+..|...+..++|+|.
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            999999999987  556666 8899999999998  77766   48999999998873  34456678889999999994


Q ss_pred             -------------CCeEEEEeeCCccCeEEEEEccCCc-----eeEEeecCCceEEEEEcCC---CCEEEEEeCCCcEEE
Q 015650          226 -------------VGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVR  284 (403)
Q Consensus       226 -------------~~~~~~~~~g~~d~~i~v~d~~~~~-----~~~~~~~~~~i~~~~~sp~---g~~l~s~~~dg~~i~  284 (403)
                                   +.  ++++ ++.|+.|++||++...     ...+..|...|.+++|+|+   +++|++++.||. |+
T Consensus       159 ~~~~~~~~~~~~~~~--~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~  234 (379)
T 3jrp_A          159 TIEEDGEHNGTKESR--KFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CI  234 (379)
T ss_dssp             C----------CTTC--EEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EE
T ss_pred             cccccccccCCCCCC--EEEE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EE
Confidence                         44  3343 3489999999998743     2456789999999999999   899999999999 99


Q ss_pred             EEEcCCCc---EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          285 IFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       285 iwd~~~~~---~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +||+.+++   ....+....|...|++++|+|++++|++++.||.|++|+++...
T Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            99998874   33333333467899999999999999999999999999999654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-35  Score=269.84  Aligned_cols=240  Identities=13%  Similarity=0.085  Sum_probs=190.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ...+.+.|++++|+|++++|++|+ ++.|+||++.+........+. +|...|.++.|++++..+++++.|     +.|+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~   80 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQD-----RNAY   80 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETT-----SSEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCC-----CeEE
Confidence            344677899999999999999997 555999999877433446676 789999999999999999999998     9999


Q ss_pred             EEECCCCc---eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCce---eeeEeec-cCCCceeEEEeeCCCe
Q 015650          160 IWDDHQSR---CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK---LLHQIET-IANPKGLCAVSQGVGS  228 (403)
Q Consensus       160 iwd~~~~~---~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~  228 (403)
                      +||+.+++   ....+. |...|.+++|+|++.+++   .|+.|++||+++++   ....+.. |...+..++|+|+++.
T Consensus        81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            99999887   445554 899999999999988777   48999999999876   4677777 8899999999998763


Q ss_pred             EEEEeeCCccCeEEEEEccCC-------------------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          229 LVLVCPGLQKGQVRVEHYASK-------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~-------------------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                        +++ ++.|+.|++||++..                   ....+ .|...|.+++|+|++++|++++.|+. |++||+.
T Consensus       161 --l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~  235 (377)
T 3dwl_C          161 --LAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPS  235 (377)
T ss_dssp             --EEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEEC
T ss_pred             --EEE-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECC
Confidence              443 348999999998521                   22233 89999999999999999999999999 9999999


Q ss_pred             CCcE----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          290 DGTL----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       290 ~~~~----~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      +++.    +..+..  |...|.+++|+|++++|++++.++.+ +|+...
T Consensus       236 ~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          236 APEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             STTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             CCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence            9887    666665  67899999999999999998866655 776653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-33  Score=258.09  Aligned_cols=247  Identities=13%  Similarity=0.166  Sum_probs=208.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      ..|...|.+++|+|++++|++|+.+ .|++|++.+++..  ..+. +|...+.++.|+++  .+++++.|     |.|++
T Consensus       131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~~--~l~~~~~d-----g~i~i  200 (401)
T 4aez_A          131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--RTMA-GHQARVGCLSWNRH--VLSSGSRS-----GAIHH  200 (401)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEEETT--EEEEEETT-----SEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE--EEec-CCCCceEEEEECCC--EEEEEcCC-----CCEEE
Confidence            3488999999999999999999855 4999999887765  5565 78899999999665  66777777     99999


Q ss_pred             EECC-CCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          161 WDDH-QSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       161 wd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      ||+. .+..+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..++|+|++..+++..+|
T Consensus       201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence            9998 456677777 999999999999998888   38999999999999999998899999999999998877665545


Q ss_pred             CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEE--eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS--STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      +.|+.|++||++++.......+...|.+++|+|++++|+++  +.||. |++||+.+++.........|...|.+++|+|
T Consensus       281 s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~  359 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSP  359 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEECT
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEECC
Confidence            68999999999987766666688899999999999999984  48999 9999999977666544334778999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          314 NAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      ++++|++++.||.|++|++.+++...
T Consensus       360 dg~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          360 DGRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             TSSEEEEECTTSEEEEEECCC-----
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcccc
Confidence            99999999999999999999988543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.2e-33  Score=246.68  Aligned_cols=237  Identities=11%  Similarity=0.199  Sum_probs=209.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      .|...|.+++|+|++++|++++.+ .|++|++.+.+......+. .|...+.++.|++++..+++++.+     +.|++|
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~  168 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSD-----GNIAVW  168 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETT-----SCEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCCEEEEEeCC-----CcEEEE
Confidence            789999999999999999998855 4999999887755545565 688889999999999999999888     999999


Q ss_pred             ECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      |+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+. +...+..++++++++.+++   ++.
T Consensus       169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~---~~~  244 (337)
T 1gxr_A          169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAV---GME  244 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEE---EET
T ss_pred             eCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEE---EcC
Confidence            999999999888 899999999999998777   48999999999998887774 5677889999999875433   347


Q ss_pred             cCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 015650          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW  317 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~  317 (403)
                      ++.|++||++......+..|...|.+++|+|++++|++++.||. |++||+.+++.+....   |...|.+++|+|++++
T Consensus       245 ~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~  320 (337)
T 1gxr_A          245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDDKY  320 (337)
T ss_dssp             TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTSCE
T ss_pred             CCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEEec---CCCcEEEEEECCCCCE
Confidence            89999999999888888899999999999999999999999999 9999999999886655   6789999999999999


Q ss_pred             EEEEeCCCcEEEEEee
Q 015650          318 LAVSSDKGTVHVFNLK  333 (403)
Q Consensus       318 l~s~~~dg~v~iwd~~  333 (403)
                      |++++.||.|++|++.
T Consensus       321 l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          321 IVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTSCEEEEEEE
T ss_pred             EEEecCCCeEEEEEEe
Confidence            9999999999999974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.3e-33  Score=244.77  Aligned_cols=267  Identities=13%  Similarity=0.132  Sum_probs=220.6

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      .++|+||+++ +||+|.|+.|+|||+.+++......+. +|...|.++.|++++..+++++.|     |.|++||+++++
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQK  100 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEec-CCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCce
Confidence            4679999986 899999999999999998877555554 688899999999999999999999     999999999999


Q ss_pred             eeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650          168 CIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (403)
Q Consensus       168 ~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~  244 (403)
                      .+..+. |...+.++.+.+...... .++.+++|+.... ..+..+..|...+..+.+.++++.  +++ ++.|+.|++|
T Consensus       101 ~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~s-~~~d~~i~iw  177 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH--LAS-GGNDNLVNVW  177 (318)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE--EEE-EETTSCEEEE
T ss_pred             eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE--EEE-EecCcceeEE
Confidence            999988 888887766655432222 4889999998775 456677888888999999998874  333 3489999999


Q ss_pred             EccCCc-----eeEEeecCCceEEEEEcCCCCEE---EEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 015650          245 HYASKR-----TKFIMAHDSRIACFALTQDGQLL---ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (403)
Q Consensus       245 d~~~~~-----~~~~~~~~~~i~~~~~sp~g~~l---~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  316 (403)
                      |+++++     ......+...|.++.++|++..+   ++++.++. |++||...........   +...+..+.|+|++.
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~  253 (318)
T 4ggc_A          178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVD---AHSQVCSILWSPHYK  253 (318)
T ss_dssp             ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEEETTTT
T ss_pred             ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-EEEEeccccccccccc---ceeeeeeeeeccccc
Confidence            998743     34456788899999999976533   45677888 9999999988877766   557899999999999


Q ss_pred             EEEEEe--CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCE
Q 015650          317 WLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT  394 (403)
Q Consensus       317 ~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~  394 (403)
                      .+++++  .|+.|+|||+++++.                                   +..+++|.+.|++++|+|||++
T Consensus       254 ~~~~~sg~~d~~i~iwd~~~~~~-----------------------------------~~~l~gH~~~V~~l~~spdg~~  298 (318)
T 4ggc_A          254 ELISGHGFAQNQLVIWKYPTMAK-----------------------------------VAELKGHTSRVLSLTMSPDGAT  298 (318)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEEECTTSSC
T ss_pred             ceEEEEEcCCCEEEEEECCCCcE-----------------------------------EEEEcCCCCCEEEEEEcCCCCE
Confidence            887765  799999999998873                                   4457788999999999999999


Q ss_pred             EEEEccCCC
Q 015650          395 VVILGMDGR  403 (403)
Q Consensus       395 l~~~~~dG~  403 (403)
                      |++|+.||+
T Consensus       299 l~S~s~D~~  307 (318)
T 4ggc_A          299 VASAAADET  307 (318)
T ss_dssp             EEEEETTTE
T ss_pred             EEEEecCCe
Confidence            999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.2e-33  Score=250.36  Aligned_cols=244  Identities=13%  Similarity=0.187  Sum_probs=197.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|...|.+++|+|++.+|++|+ |+.|+|||+.+++..  ..+. +|...|.+++|++++..+++++.|     +.
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~--~~~~-~h~~~v~~v~~sp~~~~l~s~~~d-----~~  141 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY--KRFV-GHQSEVYSVAFSPDNRQILSAGAE-----RE  141 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE--EEEE-CCCSCEEEEEECSSTTEEEEEETT-----SC
T ss_pred             chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE--EEEc-CCCCcEEEEEECCCCCEEEEEcCC-----CE
Confidence            46789999999999999999999998 555999999887755  5565 789999999999999999999999     99


Q ss_pred             EEEEECCCCceeEEE---ecCCceeEEEEecCc----------eEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEE
Q 015650          158 VMIWDDHQSRCIGEL---SFRSEVRSVKLRRDR----------IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA  221 (403)
Q Consensus       158 i~iwd~~~~~~~~~~---~~~~~i~~~~~~~~~----------~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  221 (403)
                      |++||+.........   .|...|.+++|+|++          .+++   .|+.|++|| ...+....+..|...+..++
T Consensus       142 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~  220 (343)
T 2xzm_R          142 IKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLS  220 (343)
T ss_dssp             EEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEE
Confidence            999998744333222   277889999999986          4555   499999999 45677778889999999999


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE--EEe
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--EVR  298 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~--~~~  298 (403)
                      |+|+++.  +++ |+.|+.|++||+.. ........+...|.+++|+|++.+|+++ .|+. |++||+.+++...  .+.
T Consensus       221 ~s~~g~~--l~s-gs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~-v~iw~~~~~~~~~~~~~~  295 (343)
T 2xzm_R          221 ISPNGKY--IAT-GGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQG-VKIFNLMTQSKAPVCTIE  295 (343)
T ss_dssp             ECTTSSE--EEE-EETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSC-EEEEESSSCCSCSEEECC
T ss_pred             ECCCCCE--EEE-EcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCC-EEEEEeCCCCCCceEEee
Confidence            9999874  444 45899999999954 4333444466779999999999988755 5777 9999998776543  333


Q ss_pred             c---------CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          299 R---------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       299 ~---------~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .         ..|...|.+++|+|+|++|++|+.||.|++|++++++
T Consensus       296 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             cCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            1         1266789999999999999999999999999998864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-32  Score=253.31  Aligned_cols=247  Identities=13%  Similarity=0.165  Sum_probs=210.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ..+|...|++|+|+|+|++|++|+.+ .|+||++.+++..  ..+. +|...+.++.+++.  .+++++.|     +.++
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~--~~~~-~h~~~v~~~s~~~~--~l~sgs~d-----~~i~  212 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMT-SHSARVGSLSWNSY--ILSSGSRS-----GHIH  212 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEETT--EEEEEETT-----SEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--EEEe-CCCCceEEEeeCCC--EEEEEeCC-----Ccee
Confidence            45788899999999999999999855 4999999988765  5565 78889999888765  67777777     9999


Q ss_pred             EEECCCC-ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCce----eeeEeeccCCCceeEEEeeCCCeEE
Q 015650          160 IWDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK----LLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       160 iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      +||.... ..+..+. |...+..+.+++++.+++   .|+.+++|+..+++    .+.....+...+..++++|.+..++
T Consensus       213 ~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l  292 (420)
T 4gga_A          213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  292 (420)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred             EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence            9998875 4456666 899999999999999888   48999999998764    3456677888999999999988877


Q ss_pred             EEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEe--CCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      ...+|+.|+.|++||+.++.......+...+.++.|+|+++.|++++  .|+. |+|||+.+++++.++.+  |...|++
T Consensus       293 a~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~g--H~~~V~~  369 (420)
T 4gga_A          293 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLS  369 (420)
T ss_dssp             EEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             EEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEcC--CCCCEEE
Confidence            76677899999999999988776666777899999999999998765  6899 99999999999999986  7789999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~  340 (403)
                      ++|+|||++|++|+.|++|+|||+.+..+..+
T Consensus       370 l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          370 LTMSPDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             EEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence            99999999999999999999999987765433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=257.10  Aligned_cols=283  Identities=11%  Similarity=0.096  Sum_probs=226.1

Q ss_pred             ccccCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEcCCCeeEEEEecc----------cCcceeEEEEeeeC-CeEEE
Q 015650           78 ESTSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFE----------RGGGIGVVEMLFRC-NILAL  144 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~-d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~-~~~~~  144 (403)
                      ...+.+|.+.|++++|+| ++++|++|+.++ |+||++.+..........          .+|...|.++.|++ ++..+
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            356678999999999999 999999998554 999999866543211110          24888999999999 67788


Q ss_pred             eeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc---eEEE---ecCeEEEEEcCCceeeeEeeccCCCce
Q 015650          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVV---LEQKIFVYNFADLKLLHQIETIANPKG  218 (403)
Q Consensus       145 ~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~  218 (403)
                      ++++.|     +.|++||+.+++.+..+.+...+.++.+.+.+   .+++   .|+.|++||+++++.+..+..|...+.
T Consensus       116 ~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~  190 (408)
T 4a11_B          116 TSSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL  190 (408)
T ss_dssp             EEEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred             EEEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence            888888     99999999999999999999999999999854   3555   489999999999999999999999999


Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccCCc--eeEE---------------eecCCceEEEEEcCCCCEEEEEeCCCc
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFI---------------MAHDSRIACFALTQDGQLLATSSTKGT  281 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~---------------~~~~~~i~~~~~sp~g~~l~s~~~dg~  281 (403)
                      .++|+|+++.++++  ++.||.|++||++...  ...+               ..|...|.+++|+|++++|++++.|+.
T Consensus       191 ~~~~~~~~~~ll~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          191 AVSWSPRYDYILAT--ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             EEEECSSCTTEEEE--EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEECCCCCcEEEE--EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            99999998864433  3589999999998743  2222               568899999999999999999999999


Q ss_pred             EEEEEEcCCCcEEEEEecCCC---cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccc
Q 015650          282 LVRIFNTLDGTLLQEVRRGAD---RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (403)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~---~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (403)
                       |++||+.+++....+.....   ...+........+..+++++.++.|++||+.+++.                     
T Consensus       269 -i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---------------------  326 (408)
T 4a11_B          269 -MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ---------------------  326 (408)
T ss_dssp             -EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE---------------------
T ss_pred             -EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc---------------------
Confidence             99999998876554432111   11222222333455677778899999999998773                     


Q ss_pred             ccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                    +..+..|.+.|++++|+|++++|++|+.||+
T Consensus       327 --------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          327 --------------ITMLKGHYKTVDCCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             --------------EEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             --------------eeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence                          3446677889999999999999999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.4e-33  Score=289.76  Aligned_cols=277  Identities=16%  Similarity=0.224  Sum_probs=239.3

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ...+.+|.+.|++++|+|+|++|++|+.++ |+||++.+++..  ..+. +|...|.+++|++++.++++++.|     +
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~l~s~~~d-----~  679 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--LDIK-AHEDEVLCCAFSSDDSYIATCSAD-----K  679 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--EEec-cCCCCEEEEEEecCCCEEEEEeCC-----C
Confidence            356788999999999999999999998555 999999888765  5565 799999999999999999999998     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      .|++||+.+++.+..+. |...|.+++|+++  +.+++   .|+.|++||+++++.+..+.+|...+..++|+|+++.  
T Consensus       680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~--  757 (1249)
T 3sfz_A          680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL--  757 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE--
T ss_pred             eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE--
Confidence            99999999999999998 9999999999994  44555   3899999999999999999999999999999999884  


Q ss_pred             EEeeCCccCeEEEEEccCCceeE-Ee-------------ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKF-IM-------------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~-~~-------------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (403)
                      +++ ++.||.|++||++.+.... +.             .+...+.+++|+|+|+++++++ ++. +.+||+.++..+..
T Consensus       758 l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~-v~~~d~~~~~~~~~  834 (1249)
T 3sfz_A          758 LAS-CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNK-VLLFDIHTSGLLAE  834 (1249)
T ss_dssp             EEE-EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTE-EEEEETTTCCEEEE
T ss_pred             EEE-EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCc-EEEEEecCCCceeE
Confidence            333 3489999999998854322 21             1234788999999999999887 567 99999999999888


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEE
Q 015650          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF  376 (403)
Q Consensus       297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (403)
                      +... |...|.+++|+|+++++++++.||.|++||+.+++.                                   ...+
T Consensus       835 ~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~-----------------------------------~~~~  878 (1249)
T 3sfz_A          835 IHTG-HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-----------------------------------VADC  878 (1249)
T ss_dssp             EECS-SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE-----------------------------------EEEE
T ss_pred             EcCC-CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-----------------------------------eeec
Confidence            8754 778999999999999999999999999999988763                                   3446


Q ss_pred             EEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          377 RLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       377 ~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ..|.+.+.+++|+|+|++|++++.||+
T Consensus       879 ~~h~~~v~~v~~spdg~~l~s~s~dg~  905 (1249)
T 3sfz_A          879 RGHLSWVHGVMFSPDGSSFLTASDDQT  905 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCccceEEEEECCCCCEEEEEeCCCe
Confidence            678889999999999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.5e-32  Score=253.83  Aligned_cols=267  Identities=18%  Similarity=0.243  Sum_probs=216.9

Q ss_pred             ccccCCCCCCe-EEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           78 ESTSSSPPPTL-LHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        78 ~~~~~~~~~~i-~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ...+.+|...| .++.+  ++.+|++|+. +.|++||+.+++..  ..+. +|...|.++.|++++ .+++++.|     
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~-~h~~~V~~l~~~~~~-~l~s~s~d-----  182 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLS-GHDGGVWALKYAHGG-ILVSGSTD-----  182 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECSTT-EEEEEETT-----
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEE--EEEe-CCCcCEEEEEEcCCC-EEEEEeCC-----
Confidence            35677888875 66666  5679999885 55999999888765  5665 799999999999988 78888888     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEe--cCceEEE---ecCeEEEEEcCCcee-----------------------
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLR--RDRIIVV---LEQKIFVYNFADLKL-----------------------  206 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~--~~~~~~~---~d~~i~i~d~~~~~~-----------------------  206 (403)
                      |.|++||+.+++.+..+. |...|.+++|+  +++.+++   .|+.|++||+++++.                       
T Consensus       183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            999999999999999998 99999999998  4667666   489999999987653                       


Q ss_pred             eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      +..+.+|...+  .+++++++.  +++ |+.|+.|++||+++.. ...+.+|...|.+++|+|++++|++|+.|+. |++
T Consensus       263 ~~~~~~~~~~v--~~~~~~~~~--l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~v  336 (464)
T 3v7d_B          263 VGVLRGHMASV--RTVSGHGNI--VVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRI  336 (464)
T ss_dssp             EEEECCCSSCE--EEEEEETTE--EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEE
T ss_pred             EEEccCccceE--EEEcCCCCE--EEE-EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEE
Confidence            33444454444  445677664  333 3489999999998855 4567789999999999999999999999999 999


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccc
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (403)
                      ||+.+++++..+..  |...|.++.|+  +++|++++.||.|++||+++++.                            
T Consensus       337 wd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~----------------------------  384 (464)
T 3v7d_B          337 WDLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----------------------------  384 (464)
T ss_dssp             EETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE----------------------------
T ss_pred             EECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce----------------------------
Confidence            99999999999986  77899999997  58999999999999999988662                            


Q ss_pred             eeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                             .. ...+...+..++|++++++|++|+ ||
T Consensus       385 -------~~-~~~~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          385 -------KF-SYHHTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             -------EE-EEECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             -------ee-eecCCCCccEEEEEeCCCEEEEec-CC
Confidence                   00 112455677889999999999988 65

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.8e-34  Score=254.17  Aligned_cols=237  Identities=15%  Similarity=0.206  Sum_probs=191.8

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc--eeEEEe-cCCceeEEEEec--CceEEE---ecCeEEE
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRR--DRIIVV---LEQKIFV  198 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~--~~~~~~-~~~~i~~~~~~~--~~~~~~---~d~~i~i  198 (403)
                      +|...|.++.|++++..|++++.|     ++|+|||+.+++  .+..+. |...|.+++|++  ++.+++   .|++|++
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            799999999999999999999999     999999998875  456677 999999999986  366666   4999999


Q ss_pred             EEcCCc--eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc----eeEEeecCCceEEEEEcCC---
Q 015650          199 YNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD---  269 (403)
Q Consensus       199 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~----~~~~~~~~~~i~~~~~sp~---  269 (403)
                      ||++++  +.+..+..|...+..++|+|+....++++ |+.|+.|++||++...    ...+.+|...+.+++|+|+   
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            999886  35667778999999999999854445665 4589999999998753    2334578899999999997   


Q ss_pred             --------------CCEEEEEeCCCcEEEEEEcCCC---cEEEEEecCCCcccEEEEEeCCCC----CEEEEEeCCCcEE
Q 015650          270 --------------GQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVH  328 (403)
Q Consensus       270 --------------g~~l~s~~~dg~~i~iwd~~~~---~~~~~~~~~~~~~~v~~l~~s~d~----~~l~s~~~dg~v~  328 (403)
                                    +++|++|+.|+. |++||++..   +++..+.+  |...|.+++|+|++    ++|++++.||+|+
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             ccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                          478999999999 999999755   35555654  77899999999987    8999999999999


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          329 VFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      ||++++....                               .+....+..+.+.+..++|+|++++|++++.||+
T Consensus       242 iw~~~~~~~~-------------------------------~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          242 IWTCDDASSN-------------------------------TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             EEECSSTTCC-------------------------------CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             EEEccCcccc-------------------------------chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            9999874310                               0011123556789999999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.2e-34  Score=259.09  Aligned_cols=249  Identities=14%  Similarity=0.202  Sum_probs=205.6

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-----EEEEecccCcceeEEEEeeeCC-eEEEeeCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCN-ILALVGGGPD  150 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d  150 (403)
                      ...+..|...|.+++|+|+|++|++|+ |+.++||++.....     .....+. +|...+.++.|.++ ...+++++.|
T Consensus       101 ~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D  179 (380)
T 3iz6_a          101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGD  179 (380)
T ss_dssp             EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTT
T ss_pred             ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCC
Confidence            356778999999999999999999998 55599999864321     1113444 78888999999886 4568888888


Q ss_pred             CCCCCceEEEEECCCCceeEEE-----e-cCCceeEEEEec-CceEEE---ecCeEEEEEcC-CceeeeEeeccCCCcee
Q 015650          151 PQYPLNKVMIWDDHQSRCIGEL-----S-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFA-DLKLLHQIETIANPKGL  219 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~~~~~~~~-----~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~-~~~~~~~~~~~~~~~~~  219 (403)
                           ++|++||+.+++.+..+     . |...|.++.|++ ++.+++   .|++|++||++ .++.+..+.+|...+..
T Consensus       180 -----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~  254 (380)
T 3iz6_a          180 -----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS  254 (380)
T ss_dssp             -----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred             -----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence                 99999999999988877     3 778899999987 677766   49999999998 45778889999999999


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE-Eeec-------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAH-------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~-~~~~-------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~  291 (403)
                      ++|+|++..  +++ |+.|+.|++||++++.... +..+       ...|.+++|+|+|++|++|+.||. |++||+.++
T Consensus       255 v~~~p~~~~--l~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~  330 (380)
T 3iz6_a          255 VKFFPDGQR--FGT-GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLA  330 (380)
T ss_dssp             EEECTTSSE--EEE-ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTC
T ss_pred             EEEecCCCe--EEE-EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCC
Confidence            999999874  444 4589999999999865433 3332       234899999999999999999999 999999999


Q ss_pred             cEEEEEec--CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          292 TLLQEVRR--GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       292 ~~~~~~~~--~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +.+..+..  ..|...|++++|+|||++|++|+.||+|+||++...+
T Consensus       331 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            98877732  2378899999999999999999999999999998765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-32  Score=243.66  Aligned_cols=242  Identities=17%  Similarity=0.269  Sum_probs=204.9

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ...+.+|...|.+++|+|++++|++|+.++ |++||+.+.+..  ..+. +|...+.++.|++++..+++++.|     +
T Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~d-----~  129 (312)
T 4ery_A           58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL--KTLK-GHSNYVFCCNFNPQSNLIVSGSFD-----E  129 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSEEEEEETT-----S
T ss_pred             chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE--EEEc-CCCCCEEEEEEcCCCCEEEEEeCC-----C
Confidence            355678999999999999999999998555 999999887765  5565 688899999999999999999999     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEee-ccCCCceeEEEeeCCCeEEE
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  231 (403)
                      .|++||+++++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+. .+...+..++|+|+++.+  
T Consensus       130 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--  207 (312)
T 4ery_A          130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI--  207 (312)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEE--
T ss_pred             cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEE--
Confidence            99999999999998888 889999999999998877   48999999999988877664 345677889999988743  


Q ss_pred             EeeCCccCeEEEEEccCCc-eeEEeecCCceE---EEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA---CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~---~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      ++ ++.|+.|++||++.++ ...+.+|.....   .....+++.+|++|+.||. |++||+.+++.+..+.+  |...|.
T Consensus       208 ~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~--h~~~v~  283 (312)
T 4ery_A          208 LA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQG--HTDVVI  283 (312)
T ss_dssp             EE-EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTTCCEEEEECC--CSSCEE
T ss_pred             EE-EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCCchhhhhhhc--cCCcEE
Confidence            33 3489999999998865 445666665433   2333468899999999999 99999999999999986  678999


Q ss_pred             EEEeCCCCCEEEEEe--CCCcEEEEEee
Q 015650          308 SLAFSSNAQWLAVSS--DKGTVHVFNLK  333 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~--~dg~v~iwd~~  333 (403)
                      +++|+|++.+|++++  .|+.|++|+.+
T Consensus       284 ~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          284 STACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEeecCcCCceEEEEccCCccEEEecCC
Confidence            999999999999987  69999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.8e-33  Score=252.64  Aligned_cols=245  Identities=13%  Similarity=0.119  Sum_probs=193.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEc------------CCcEEEEEcCCCeeEEE--Eec--c--cCcceeEEEEeeeCCe
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGT------------DHGFRIYNCDPFREIFR--RDF--E--RGGGIGVVEMLFRCNI  141 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~------------~~~i~iw~~~~~~~~~~--~~~--~--~~~~~~v~~~~~~~~~  141 (403)
                      .+.+|...|.+++++  +..+++|.            ++.+|+|++........  ...  .  ..+...+..++|+||+
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            467788889888764  55666653            34499999865543221  111  1  1234457788999988


Q ss_pred             EE--EeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeE--eeccCC
Q 015650          142 LA--LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQ--IETIAN  215 (403)
Q Consensus       142 ~~--~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~--~~~~~~  215 (403)
                      .+  +++++.|     ++|+|||+.+++.+..+.|...|.+++|+||+.+++  .++.+++|+..+++.+..  ...|..
T Consensus       146 ~~la~as~~~d-----~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~  220 (365)
T 4h5i_A          146 TVAAIASSKVP-----AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNW  220 (365)
T ss_dssp             SCEEEEESCSS-----CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTE
T ss_pred             CEEEEEECCCC-----CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCC
Confidence            65  4577778     999999999999999999989999999999999988  578889999888776543  345666


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccC----eEEEEEccCCc-----eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKG----QVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~----~i~v~d~~~~~-----~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw  286 (403)
                      .+..++|+|++..++.++   .++    .+++|++....     ...+..|...|++++|+|||++||+|+.|+. |+||
T Consensus       221 ~v~~v~fspdg~~l~~~s---~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~-V~iw  296 (365)
T 4h5i_A          221 SLSKINFIADDTVLIAAS---LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS-IALV  296 (365)
T ss_dssp             EEEEEEEEETTEEEEEEE---ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-EEEE
T ss_pred             CEEEEEEcCCCCEEEEEe---cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-EEEE
Confidence            788999999987654443   333    68888887643     2446788999999999999999999999999 9999


Q ss_pred             EcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      |+++++++..+..+ |...|++|+|+|||++||+|+.|++|+|||+...-
T Consensus       297 d~~~~~~~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          297 KLKDLSMSKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             ETTTTEEEEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             ECCCCcEEEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            99999999887543 88999999999999999999999999999997544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.3e-32  Score=265.68  Aligned_cols=272  Identities=14%  Similarity=0.216  Sum_probs=226.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCC----eeEEEEecccCccee-EEEEeeeC--CeEEEeeCCCCCCCC
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF----REIFRRDFERGGGIG-VVEMLFRC--NILALVGGGPDPQYP  154 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~----~~~~~~~~~~~~~~~-v~~~~~~~--~~~~~~s~~~d~~~~  154 (403)
                      ..|.+.|.+++|+|+|++|++++++.|+||++++.    +..  ..+. +|... |.+++|++  ++.++++++.|    
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~--~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~d----   87 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV--VQFT-GHGSSVVTTVKFSPIKGSQYLCSGDES----   87 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE--EEEC-TTTTSCEEEEEECSSTTCCEEEEEETT----
T ss_pred             CCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccc--eEEe-cCCCceEEEEEECcCCCCCEEEEecCC----
Confidence            35788999999999999999999888999999876    544  5565 78888 99999999  99999999998    


Q ss_pred             CceEEEEECCCC--------ceeEEEe-cCCceeEEEEecCceEEEe---c----CeEEEEEcCCceeeeEeeccCCCce
Q 015650          155 LNKVMIWDDHQS--------RCIGELS-FRSEVRSVKLRRDRIIVVL---E----QKIFVYNFADLKLLHQIETIANPKG  218 (403)
Q Consensus       155 ~~~i~iwd~~~~--------~~~~~~~-~~~~i~~~~~~~~~~~~~~---d----~~i~i~d~~~~~~~~~~~~~~~~~~  218 (403)
                       |.|++||+.++        +.+..+. |...|.+++|+|++.+++.   +    +.|++||  .++.+..+..|...+.
T Consensus        88 -g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~  164 (615)
T 1pgu_A           88 -GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN  164 (615)
T ss_dssp             -SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred             -CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence             99999999755        5666676 8999999999999998882   3    5788887  6778888889999999


Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCC---ceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCcE
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS---RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~---~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~  293 (403)
                      .++|+++++.+++.  ++.|+.|++||++..+ ...+..|..   .|.+++|+|+ +++|++++.|+. |++||+.+++.
T Consensus       165 ~~~~~~~~~~~l~~--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~  241 (615)
T 1pgu_A          165 ACHLKQSRPMRSMT--VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEF  241 (615)
T ss_dssp             EEEECSSSSCEEEE--EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCE
T ss_pred             EEEECCCCCcEEEE--EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCE
Confidence            99999998754443  3589999999998855 456778888   9999999999 999999999999 99999999999


Q ss_pred             EEEEecC--CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeee
Q 015650          294 LQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (403)
Q Consensus       294 ~~~~~~~--~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (403)
                      +..+...  .|...|.+++|+ ++++|++++.||.|++||+++++..                                 
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~---------------------------------  287 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV---------------------------------  287 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE---------------------------------
T ss_pred             eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE---------------------------------
Confidence            9888320  277899999999 9999999999999999999987632                                 


Q ss_pred             eeEEEEEe----CCCceEEEeccCCCEEEEEccCCC
Q 015650          372 SVAQFRLV----EGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       372 ~~~~~~~~----~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                        ..+..+    ...+..+.|+ ++++|++++.||+
T Consensus       288 --~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~  320 (615)
T 1pgu_A          288 --QKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGT  320 (615)
T ss_dssp             --EEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSC
T ss_pred             --EEEcCCCCcccCceeEEEeC-CCCeEEEEECCCC
Confidence              222332    2345566765 7888888888774

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.6e-32  Score=250.33  Aligned_cols=271  Identities=14%  Similarity=0.269  Sum_probs=219.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ..+|...|.+++|  ++++|++|+.+ .|++||+.+++..  ..+. +|...|.++.|  ++..+++++.|     |.|+
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~l~~--~~~~l~sg~~d-----g~i~  196 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--RILT-GHTGSVLCLQY--DERVIITGSSD-----STVR  196 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--EEEC-CCSSCEEEEEC--CSSEEEEEETT-----SCEE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE--EEEc-CCCCcEEEEEE--CCCEEEEEcCC-----CeEE
Confidence            3457788999887  78999999855 5999999887765  5565 78899999999  55577888888     9999


Q ss_pred             EEECCCCceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCceee---eEeeccCCCceeEEEeeCCCeEEEEee
Q 015650          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      +||+.+++.+..+. |...|.+++|+++..+.+ .|+.|++||+++++..   ..+.+|...+..+++  +++  ++++ 
T Consensus       197 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~s-  271 (435)
T 1p22_A          197 VWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK--YIVS-  271 (435)
T ss_dssp             EEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT--EEEE-
T ss_pred             EEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC--EEEE-
Confidence            99999999999988 899999999986532222 5899999999987655   566778888777777  444  3343 


Q ss_pred             CCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          235 GLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      |+.|+.|++||++++. ...+..|...|.++.|  ++++|++|+.||. |++||+++++++..+..  |...|.+++|  
T Consensus       272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~--  344 (435)
T 1p22_A          272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--  344 (435)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC--
T ss_pred             EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe--
Confidence            3479999999998854 5567889999999999  5789999999999 99999999999999986  7789999999  


Q ss_pred             CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCC
Q 015650          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~  393 (403)
                      ++.+|++|+.||.|++||+.+++......                          ....+..+..|.+.|.+++|  +++
T Consensus       345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--------------------------~~~~~~~~~~h~~~v~~l~~--~~~  396 (435)
T 1p22_A          345 DNKRIVSGAYDGKIKVWDLVAALDPRAPA--------------------------GTLCLRTLVEHSGRVFRLQF--DEF  396 (435)
T ss_dssp             CSSEEEEEETTSCEEEEEHHHHTSTTSCT--------------------------TTTEEEEECCCSSCCCCEEE--CSS
T ss_pred             cCCEEEEEeCCCcEEEEECCCCCCccccc--------------------------cchheeeccCCCCCeEEEEe--CCC
Confidence            78999999999999999998876321110                          00124446678889999999  889


Q ss_pred             EEEEEccCCC
Q 015650          394 TVVILGMDGR  403 (403)
Q Consensus       394 ~l~~~~~dG~  403 (403)
                      +|++|+.||+
T Consensus       397 ~l~s~s~Dg~  406 (435)
T 1p22_A          397 QIVSSSHDDT  406 (435)
T ss_dssp             CEEECCSSSE
T ss_pred             EEEEEeCCCE
Confidence            9999999984

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.2e-32  Score=262.93  Aligned_cols=277  Identities=10%  Similarity=0.175  Sum_probs=220.3

Q ss_pred             cccCCCCC---CeEEEEEcCC-CCEEEEEcC-CcEEEEEcCCCeeEEEEeccc---CcceeEEEEeeeCCeEEEeeCCCC
Q 015650           79 STSSSPPP---TLLHISFNQD-HGCFAAGTD-HGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPD  150 (403)
Q Consensus        79 ~~~~~~~~---~i~~i~~s~d-~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~s~~~d  150 (403)
                      ..+.+|..   .|.+++|+|+ +++|++++. +.|++||+.+++..  ..+..   .|...+.++.|+ ++..+++++.|
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  273 (615)
T 1pgu_A          197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL--KYIEDDQEPVQGGIFALSWL-DSQKFATVGAD  273 (615)
T ss_dssp             EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE--EECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred             eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe--EEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence            45677888   9999999999 999999884 55999999887765  44522   588899999999 88889999888


Q ss_pred             CCCCCceEEEEECCCCceeEEEe-c----CCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEE
Q 015650          151 PQYPLNKVMIWDDHQSRCIGELS-F----RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~~~~~~~~~-~----~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  222 (403)
                           +.|++||+.+++.+..+. +    ...+.++.|. ++.+++   .|+.|++||+.+++.+..+..|...+..+++
T Consensus       274 -----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~  347 (615)
T 1pgu_A          274 -----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV  347 (615)
T ss_dssp             -----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred             -----CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence                 999999999999988887 3    3677888886 444444   4899999999888777777665554444333


Q ss_pred             eeC---------------------------------CCeE----------------------------------------
Q 015650          223 SQG---------------------------------VGSL----------------------------------------  229 (403)
Q Consensus       223 ~~~---------------------------------~~~~----------------------------------------  229 (403)
                       ++                                 ++.+                                        
T Consensus       348 -~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  426 (615)
T 1pgu_A          348 -NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND  426 (615)
T ss_dssp             -TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred             -cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence             21                                 1111                                        


Q ss_pred             -------------------------------EEEeeCCc-cCeEEEEEccCCce--eEEeecCCceEEEEEcCCCCEEEE
Q 015650          230 -------------------------------VLVCPGLQ-KGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLAT  275 (403)
Q Consensus       230 -------------------------------~~~~~g~~-d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~s  275 (403)
                                                     ++++ +.. ++.|++||+..+..  ..+..|...|.+++|+|++++|++
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  505 (615)
T 1pgu_A          427 DDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV-GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA  505 (615)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE-EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred             CceEEEeccCCceeeecccCCCceEEEEcCCEEEE-eecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEE
Confidence                                           1222 224 77788888777555  455678999999999999999999


Q ss_pred             EeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC----------CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCC
Q 015650          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS----------NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS  345 (403)
Q Consensus       276 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~----------d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  345 (403)
                      ++.|+. |++||+.+++.+..+... |...|++++|+|          ++++|++++.||.|++||++++..        
T Consensus       506 ~~~dg~-i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--------  575 (615)
T 1pgu_A          506 GDVMGK-ILLYDLQSREVKTSRWAF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--------  575 (615)
T ss_dssp             EETTSC-EEEEETTTTEEEECCSCC-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--------
T ss_pred             cCCCCe-EEEeeCCCCcceeEeecC-CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce--------
Confidence            999999 999999999998877642 678999999999          999999999999999999998742        


Q ss_pred             CCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                                .+..+..|.+.|+.++|+||++ |++++.||+
T Consensus       576 --------------------------~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~  606 (615)
T 1pgu_A          576 --------------------------IIKALNAHKDGVNNLLWETPST-LVSSGADAC  606 (615)
T ss_dssp             --------------------------CEEETTSSTTCEEEEEEEETTE-EEEEETTSC
T ss_pred             --------------------------echhhhcCccceEEEEEcCCCC-eEEecCCce
Confidence                                      0223456678999999999999 999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-32  Score=270.56  Aligned_cols=239  Identities=11%  Similarity=0.107  Sum_probs=191.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      ...+|...|++++|+|++++||+|+.+ .|+||+....+..  ..+.  |...|.++.|++ +.++++++.|     +.|
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--~~~~--~~~~V~~l~fsp-g~~L~S~s~D-----~~v   81 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--IKLE--DRSAIKEMRFVK-GIYLVVINAK-----DTV   81 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--EECS--SCCCEEEEEEET-TTEEEEEETT-----CEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--EEcC--CCCCEEEEEEcC-CCEEEEEECc-----CeE
Confidence            345799999999999999999999855 4999998766544  3443  778899999999 6688888888     999


Q ss_pred             EEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceee-----------eEeeccCCCceeEEEee
Q 015650          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL-----------HQIETIANPKGLCAVSQ  224 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~  224 (403)
                      ++||+.+++++..+.+...|.+++|+|++.+++   .||+|++||++++++.           ..+..|...+..++|+|
T Consensus        82 ~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           82 YVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             EEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             EEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence            999999999999998889999999999999888   4999999999987753           23356778999999999


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccCCce-eEEeec------------------CCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAH------------------DSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~------------------~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      ++...+++  |+.|+.| +||++.++. ..+..|                  ...|.+++|+|+|++|++++.|+. |++
T Consensus       162 ~~~~~l~~--g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~l  237 (902)
T 2oaj_A          162 RDIGTVLI--SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVF  237 (902)
T ss_dssp             TEEEEEEE--ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEE
T ss_pred             CCCCEEEE--EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEE
Confidence            75444333  4589999 999998654 344444                  477999999999999999999999 999


Q ss_pred             EEcCCCcEEEE--Ee---cC-----------CCcccEEEEEeC----CCC-CEEEEEeCC-----CcEEEEEe
Q 015650          286 FNTLDGTLLQE--VR---RG-----------ADRAEIYSLAFS----SNA-QWLAVSSDK-----GTVHVFNL  332 (403)
Q Consensus       286 wd~~~~~~~~~--~~---~~-----------~~~~~v~~l~~s----~d~-~~l~s~~~d-----g~v~iwd~  332 (403)
                      ||+++++++..  +.   .+           .|...|++++|+    |++ .+|++|+.|     ..+++|++
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            99999988754  21   11           134579999995    554 466777655     36788875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-32  Score=250.03  Aligned_cols=248  Identities=13%  Similarity=0.157  Sum_probs=205.2

Q ss_pred             ccccCCCCCCeEEEEEcCC----C---CEEEEEc-CCcEEEEEcCCCee---EEEEecccCc-----ceeEEEEeee---
Q 015650           78 ESTSSSPPPTLLHISFNQD----H---GCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGG-----GIGVVEMLFR---  138 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d----~---~~l~~~~-~~~i~iw~~~~~~~---~~~~~~~~~~-----~~~v~~~~~~---  138 (403)
                      ...+.+|...|++++|+|+    +   ++|++++ ++.|++|++.+.+.   .....+. .|     ...+.++.|+   
T Consensus        55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC
T ss_pred             ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeecc
Confidence            3456689999999999999    9   9999988 55599999976654   1124444 45     5899999999   


Q ss_pred             -CCeEE-EeeCCCCCCCCCceEEEEECCC------CceeE-----EEe--------cCCceeEEEEecCceEEE---ecC
Q 015650          139 -CNILA-LVGGGPDPQYPLNKVMIWDDHQ------SRCIG-----ELS--------FRSEVRSVKLRRDRIIVV---LEQ  194 (403)
Q Consensus       139 -~~~~~-~~s~~~d~~~~~~~i~iwd~~~------~~~~~-----~~~--------~~~~i~~~~~~~~~~~~~---~d~  194 (403)
                       +++.. +++++.+     |.|++||+.+      ++.+.     .+.        |...|.+++|+|++ +++   .|+
T Consensus       134 ~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg  207 (397)
T 1sq9_A          134 DRLLSHRLVATDVK-----GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG  207 (397)
T ss_dssp             ----CEEEEEEETT-----SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred             CCCCceEEEEEeCC-----CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC
Confidence             99988 9999888     9999999998      66665     652        68899999999999 666   489


Q ss_pred             eEEEEEcCCceeeeEeec---c---CCCceeEEEeeCCCeEEEEeeCCcc---CeEEEEEccCCc-eeEEee--------
Q 015650          195 KIFVYNFADLKLLHQIET---I---ANPKGLCAVSQGVGSLVLVCPGLQK---GQVRVEHYASKR-TKFIMA--------  256 (403)
Q Consensus       195 ~i~i~d~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~v~d~~~~~-~~~~~~--------  256 (403)
                      .|++||+++++.+..+..   |   ...+..++|+++++.+  ++ ++.|   +.|++||+++.. +..+..        
T Consensus       208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l--~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~  284 (397)
T 1sq9_A          208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL--AI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS  284 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE--EE-EEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE--EE-EecCCCCceEEEEECCCCcccceeccCccccccc
Confidence            999999999999999988   8   8899999999998743  33 3478   999999998754 455666        


Q ss_pred             -----cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC----CC---------------cccEEEEEeC
Q 015650          257 -----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG----AD---------------RAEIYSLAFS  312 (403)
Q Consensus       257 -----~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~----~~---------------~~~v~~l~~s  312 (403)
                           |...|.+++|+|++++|++++.|+. |+|||+.+++++..+...    .|               ...|++++|+
T Consensus       285 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~  363 (397)
T 1sq9_A          285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL  363 (397)
T ss_dssp             -CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred             ccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence                 9999999999999999999999999 999999999999999811    14               7899999999


Q ss_pred             CCC----------CEEEEEeCCCcEEEEEeecCC
Q 015650          313 SNA----------QWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       313 ~d~----------~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      |++          ++|++++.||.|++|++++++
T Consensus       364 ~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          364 KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            998          799999999999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.4e-31  Score=245.84  Aligned_cols=268  Identities=19%  Similarity=0.270  Sum_probs=221.4

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|...|.+++|+  +.+|++|+ |+.|++|++.+++..  ..+. +|...+.++.++++.  +++++.|     
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~--l~s~s~d-----  218 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI--HTLY-GHTSTVRCMHLHEKR--VVSGSRD-----  218 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEETTE--EEEEETT-----
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEE--EEEC-CCCCcEEEEEecCCE--EEEEeCC-----
Confidence            345678899999999997  56888887 555999999888765  5565 788899999997664  6666777     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      |.|++||+.+++.+..+. |...|.++.+  ++.+++   .|+.|++||+++++.+..+..|...+..+.+  ++..  +
T Consensus       219 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~--l  292 (445)
T 2ovr_B          219 ATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIH--V  292 (445)
T ss_dssp             SEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSE--E
T ss_pred             CEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCE--E
Confidence            999999999999999888 8999999999  444444   4899999999999999999988888888777  5443  3


Q ss_pred             EeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC-CCcccEEEE
Q 015650          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSL  309 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l  309 (403)
                      ++ ++.|+.|++||++++. ...+.+|...+.++.+  ++++|++++.||. |++||+++++.+..+..+ .|...|.++
T Consensus       293 ~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~  368 (445)
T 2ovr_B          293 VS-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCL  368 (445)
T ss_dssp             EE-EETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred             EE-EeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEE
Confidence            43 3489999999998855 5567789999998887  5679999999999 999999999999988753 266889999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEE-----EEeCCCce
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF-----RLVEGSPY  384 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  384 (403)
                      +|+  +++|++++.||.|++||+.+++..                                   ..+     ..+.+.+.
T Consensus       369 ~~~--~~~l~s~~~dg~v~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~v~  411 (445)
T 2ovr_B          369 QFN--KNFVITSSDDGTVKLWDLKTGEFI-----------------------------------RNLVTLESGGSGGVVW  411 (445)
T ss_dssp             EEC--SSEEEEEETTSEEEEEETTTCCEE-----------------------------------EEEEECTTGGGTCEEE
T ss_pred             EEC--CCEEEEEeCCCeEEEEECCCCcee-----------------------------------eeeeccccCCCCceEE
Confidence            995  689999999999999999988731                                   112     23456899


Q ss_pred             EEEeccCCCEEEEEccCCC
Q 015650          385 IVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       385 ~~~fs~d~~~l~~~~~dG~  403 (403)
                      .++|+|++..|++|+.||+
T Consensus       412 ~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          412 RIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EEEECSSEEEEEEECSSSS
T ss_pred             EEEecCCEEEEEEcccCCC
Confidence            9999999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1e-32  Score=248.97  Aligned_cols=238  Identities=13%  Similarity=0.179  Sum_probs=200.6

Q ss_pred             CCCCCeEEEEEcCC----CCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCc
Q 015650           83 SPPPTLLHISFNQD----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLN  156 (403)
Q Consensus        83 ~~~~~i~~i~~s~d----~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~  156 (403)
                      .|...|++++|+|+    +++|++|+.++ |++|++.+.+..  ..+. +|...|.++.|++ ++..+++++.|     |
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~l~s~~~d-----g  138 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI--KHYV-GHGNAINELKFHPRDPNLLLSVSKD-----H  138 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE--EEEE-SCCSCEEEEEECSSCTTEEEEEETT-----S
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe--eeec-CCCCcEEEEEECCCCCCEEEEEeCC-----C
Confidence            47789999999999    67899888555 999999887765  4565 6889999999999 88899999988     9


Q ss_pred             eEEEEECCCCceeEEE---e-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeec-----------------
Q 015650          157 KVMIWDDHQSRCIGEL---S-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET-----------------  212 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~-----------------  212 (403)
                      .|++||+.+++.+..+   . |...|.+++|+|++.+++   .|+.|++||+++++.+..+..                 
T Consensus       139 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (366)
T 3k26_A          139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK  218 (366)
T ss_dssp             CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred             eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence            9999999999999888   4 899999999999998877   489999999998766544433                 


Q ss_pred             -----------cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc---------------eeEEeecCCceEEEEE
Q 015650          213 -----------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---------------TKFIMAHDSRIACFAL  266 (403)
Q Consensus       213 -----------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~---------------~~~~~~~~~~i~~~~~  266 (403)
                                 |...+..++++  ++  ++++ ++.|+.|++||++...               ...+..|...|.+++|
T Consensus       219 ~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  293 (366)
T 3k26_A          219 IHFPDFSTRDIHRNYVDCVRWL--GD--LILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF  293 (366)
T ss_dssp             ECCCSEEECSSCSSCCCEEEEE--TT--EEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred             eccCccccccCCcceEEEEEEc--CC--EEEE-EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence                       78888999998  44  3444 3479999999988742               4556789999999999


Q ss_pred             cCC--CCEEEEEeCCCcEEEEEEcCCCc----EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          267 TQD--GQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       267 sp~--g~~l~s~~~dg~~i~iwd~~~~~----~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      +|+  +++|++++.||. |++||+.+++    ....+..+.|...|++++|+|++++|++++.||.|++||+.+
T Consensus       294 s~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          294 SMDFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EECTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cCCCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999  999999999999 9999999875    445676644478999999999999999999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.6e-32  Score=282.93  Aligned_cols=310  Identities=15%  Similarity=0.185  Sum_probs=235.1

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYP  154 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~  154 (403)
                      ...+.+|...|.+++|+|+|++|++++.+ .|+|||+.+++..  ..+. +|...+.++.|++  +...+++++.|    
T Consensus       650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d----  722 (1249)
T 3sfz_A          650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV--HTYD-EHSEQVNCCHFTNKSNHLLLATGSND----  722 (1249)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSCCEEEEEETT----
T ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE--EEEc-CCCCcEEEEEEecCCCceEEEEEeCC----
Confidence            35677899999999999999999999854 5999999988765  5565 6889999999998  66788999988    


Q ss_pred             CceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEee-------------------
Q 015650          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE-------------------  211 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-------------------  211 (403)
                       +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++....+.                   
T Consensus       723 -~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  801 (1249)
T 3sfz_A          723 -FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV  801 (1249)
T ss_dssp             -SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred             -CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence             999999999999999888 999999999999998887   48999999998765544332                   


Q ss_pred             ------------------------------------ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEE
Q 015650          212 ------------------------------------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFI  254 (403)
Q Consensus       212 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~  254 (403)
                                                          .|...+..+++++++..+  ++ ++.++.|++||+.++. ...+
T Consensus       802 ~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l--~~-~~~dg~v~vwd~~~~~~~~~~  878 (1249)
T 3sfz_A          802 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA--VI-ALSQYCVELWNIDSRLKVADC  878 (1249)
T ss_dssp             CCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEE--EE-ECSSSCEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEE--EE-EeCCCeEEEEEcCCCceeeec
Confidence                                                445667788888887743  33 3478999999998854 4557


Q ss_pred             eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC--------------------------------------------
Q 015650          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--------------------------------------------  290 (403)
Q Consensus       255 ~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~--------------------------------------------  290 (403)
                      .+|...|.+++|+|+|++|++++.|+. |++||+.+                                            
T Consensus       879 ~~h~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1249)
T 3sfz_A          879 RGHLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID  957 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred             CCCccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence            789999999999999999999999988 88888531                                            


Q ss_pred             -----------------------------------CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          291 -----------------------------------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       291 -----------------------------------~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                                                         ++.+..+.  .|...|++++|+|+|++|++++.||.|++||+.++
T Consensus       958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A          958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp             EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred             EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence                                               22222232  26678999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCC-CCcccccccccccccceeeeeee------eEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          336 SGSARSEPRSTSDP-TLPTSSLSFIKGVLPKYFSSEWS------VAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       336 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      +...... +..... ........++.... ...-..|+      ...+..|.+.+..++|+||+++|++++.||+
T Consensus      1036 ~~~~~~~-~~~~v~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~ 1108 (1249)
T 3sfz_A         1036 DYVFLQA-HQETVKDFRLLQDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108 (1249)
T ss_dssp             EEECCBC-CSSCEEEEEECSSSEEEEEES-SSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC
T ss_pred             ceEEEec-CCCcEEEEEEcCCCcEEEEEC-CCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCc
Confidence            7543222 111111 00011111111000 00011222      3457778889999999999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-31  Score=246.96  Aligned_cols=272  Identities=8%  Similarity=0.055  Sum_probs=214.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe---eEEEEecc-------------------------------------
Q 015650           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR---EIFRRDFE-------------------------------------  125 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~---~~~~~~~~-------------------------------------  125 (403)
                      .++.+++|+++|++|+++.++.|++|++.+++   .+......                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            47889999999999888888889999998776   32111100                                     


Q ss_pred             --------------cCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEECC--CCceeEEEe---cCCceeEEEEec
Q 015650          126 --------------RGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDH--QSRCIGELS---FRSEVRSVKLRR  185 (403)
Q Consensus       126 --------------~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~~--~~~~~~~~~---~~~~i~~~~~~~  185 (403)
                                    ..+...|.+++|++++..| ++++.|     |.|++||+.  +++.+..+.   +...|.+++|+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                          0122369999999999885 888888     999999999  888888774   678999999999


Q ss_pred             CceEEE---ecCeEEEEEcCCceeee----EeeccCCCceeEEEeeC---CCeEEEEeeCCccCeEEEEEccCCce-eE-
Q 015650          186 DRIIVV---LEQKIFVYNFADLKLLH----QIETIANPKGLCAVSQG---VGSLVLVCPGLQKGQVRVEHYASKRT-KF-  253 (403)
Q Consensus       186 ~~~~~~---~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~d~~i~v~d~~~~~~-~~-  253 (403)
                      ++.+++   .++.|++|++.+++...    .+..|...+..++|+|+   +.  ++++ ++.|+.|++||++.+.. .. 
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~--~l~s-~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ--FIIT-SDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE--EEEE-EETTSCEEEEEESCTTCEEEE
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc--EEEE-EcCCCcEEEEECCCCceeeee
Confidence            998887   37899999998876554    67788999999999998   43  3444 34899999999988654 33 


Q ss_pred             EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC-----------------------CCcccEEEEE
Q 015650          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----------------------ADRAEIYSLA  310 (403)
Q Consensus       254 ~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~l~  310 (403)
                      +.+|...|.+++|+ ++++|++++.|+. |+|||+.+++++..+..+                       .....|.+++
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  314 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII  314 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence            45899999999999 9999999999999 999999999998888632                       1235799999


Q ss_pred             eCCCCCEEEEEe-CCCcEEEEEe--ecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650          311 FSSNAQWLAVSS-DKGTVHVFNL--KVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (403)
Q Consensus       311 ~s~d~~~l~s~~-~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (403)
                      |+|++++|++++ .|+.|+||++  .++..                                ...+..+..+ +.+..++
T Consensus       315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~--------------------------------l~~~~~~~~~-~~v~~~~  361 (450)
T 2vdu_B          315 KSKNLPFVAFFVEATKCIIILEMSEKQKGD--------------------------------LALKQIITFP-YNVISLS  361 (450)
T ss_dssp             ECSSSSEEEEEETTCSEEEEEEECSSSTTC--------------------------------EEEEEEEECS-SCEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEeccCCCCc--------------------------------eeeccEeccC-CceEEEE
Confidence            999999999998 8999999999  33321                                0113345555 7899999


Q ss_pred             eccCCCEEEEEcc
Q 015650          388 FGHQKNTVVILGM  400 (403)
Q Consensus       388 fs~d~~~l~~~~~  400 (403)
                      |+|++.++++++.
T Consensus       362 ~~~~~~~v~~~~~  374 (450)
T 2vdu_B          362 AHNDEFQVTLDNK  374 (450)
T ss_dssp             EETTEEEEEECCT
T ss_pred             ecCCcEEEEEecc
Confidence            9996544444443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.8e-31  Score=232.91  Aligned_cols=244  Identities=12%  Similarity=0.159  Sum_probs=206.9

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      ...+|...|++++|+|++++|++|+.+ .|+||++++++..  ..+. +|...+..+.+.+.  .+++++.+     +.+
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~--~~~~-~h~~~~~~~~~~~~--~l~s~~~~-----~~~  131 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMT-SHSARVGSLSWNSY--ILSSGSRS-----GHI  131 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEETT--EEEEEETT-----SEE
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE--EEec-CccceEEEeecCCC--EEEEEecC-----Cce
Confidence            356788899999999999999999855 5999999988766  5555 68888888777665  56667777     999


Q ss_pred             EEEECCCCc-eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCcee----eeEeeccCCCceeEEEeeCCCeE
Q 015650          159 MIWDDHQSR-CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL----LHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       159 ~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      ++|+...+. .+..+. |...+..+.+.+++.+++   .|+.|++||+++++.    ......+...+..+.+.+.+..+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred             EeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence            999988764 445555 899999999999998888   489999999988653    34445567788889999988887


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEe--CCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      +...+++.++.|++||.+.........+...+..+.|+|++..+++++  .|+. |+|||+++++++.++.+  |.+.|+
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~-i~iwd~~~~~~~~~l~g--H~~~V~  288 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVL  288 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEE
T ss_pred             EEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE-EEEEECCCCcEEEEEcC--CCCCEE
Confidence            776678899999999999988888888899999999999999887755  7899 99999999999999986  778999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +++|+|||++|++|+.||+|+|||+.+.+
T Consensus       289 ~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          289 SLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            99999999999999999999999997654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-31  Score=267.35  Aligned_cols=310  Identities=14%  Similarity=0.079  Sum_probs=207.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEE---------EecccCcceeEEEEeeeCC-eEEEeeCCCCCC
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFR---------RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQ  152 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~  152 (403)
                      |...|++++|+|++++|++|+.++ |++||+++.+....         ..+ .+|...|.+++|+|+ ...+++++.|  
T Consensus        97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~-~~h~~~V~sl~~sp~~~~~l~~g~~d--  173 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP-AARLSPIVSIQWNPRDIGTVLISYEY--  173 (902)
T ss_dssp             CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS-SSCCCCCCEEEEETTEEEEEEEECSS--
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccc-ccCCCCeEEEEEccCCCCEEEEEeCC--
Confidence            667899999999999999998555 99999987764311         122 368889999999996 4677788888  


Q ss_pred             CCCceEEEEECCCCceeEEEe-c------------------CCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeE-
Q 015650          153 YPLNKVMIWDDHQSRCIGELS-F------------------RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQ-  209 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~-~------------------~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~-  209 (403)
                         +.| +||+++++.+..+. |                  ...|.+++|+|++.+++   .|++|++||+++++++.. 
T Consensus       174 ---g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r  249 (902)
T 2oaj_A          174 ---VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR  249 (902)
T ss_dssp             ---CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             ---CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence               999 99999999888876 3                  36799999999999888   499999999998877653 


Q ss_pred             -ee---cc-------------CCCceeEEEeeCC--C-eEEEEeeC----------------------------------
Q 015650          210 -IE---TI-------------ANPKGLCAVSQGV--G-SLVLVCPG----------------------------------  235 (403)
Q Consensus       210 -~~---~~-------------~~~~~~~~~~~~~--~-~~~~~~~g----------------------------------  235 (403)
                       +.   .|             ...+..++|++..  + ..+++++|                                  
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~  329 (902)
T 2oaj_A          250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA  329 (902)
T ss_dssp             CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred             eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence             21   12             2346677775421  1 12222221                                  


Q ss_pred             -----------------------------------------CccCeEEEEEccCCcee-E--------------------
Q 015650          236 -----------------------------------------LQKGQVRVEHYASKRTK-F--------------------  253 (403)
Q Consensus       236 -----------------------------------------~~d~~i~v~d~~~~~~~-~--------------------  253 (403)
                                                               +.|+.|++||+..+... .                    
T Consensus       330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~  409 (902)
T 2oaj_A          330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMA  409 (902)
T ss_dssp             SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEE
T ss_pred             CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEE
Confidence                                                     12355666665432110 0                    


Q ss_pred             ---------------------EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEE----EEEec-----CCCc
Q 015650          254 ---------------------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL----QEVRR-----GADR  303 (403)
Q Consensus       254 ---------------------~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~----~~~~~-----~~~~  303 (403)
                                           +.+|...+.+++|+|++++|++|+.|++ |++||+.++...    ..+..     ..|.
T Consensus       410 s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dgt-VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~  488 (902)
T 2oaj_A          410 ASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGS-VRIYDASHGDIQDNASFEVNLSRTLNKAKE  488 (902)
T ss_dssp             EEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSE-EEEEESSCCTTTTTBCEEEEHHHHTTCSSS
T ss_pred             EEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCc-EEEEECCCccccCCceEEeechhhcCCCCC
Confidence                                 1122333444556789999999999999 999999877421    11111     1377


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC----------CCCCCCCCCCCcccccccc-cccccceeeeeee
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR----------SEPRSTSDPTLPTSSLSFI-KGVLPKYFSSEWS  372 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  372 (403)
                      ..|++++|+|||++||+|+.||+|+|||+.+++....          ++...-....... ...++ .+..+.+...-..
T Consensus       489 ~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~  567 (902)
T 2oaj_A          489 LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG-VLVDVRDRAPTGVRQGFMP  567 (902)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSC-SEEECGGGCCTTCSEEEEE
T ss_pred             CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcc-ccccccccCCCCCCCccce
Confidence            8999999999999999999999999999998753110          0000000000000 00000 0011111111122


Q ss_pred             eEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       373 ~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      +..+++|.+.|+.|+||||| +||+|+.||+
T Consensus       568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~t  597 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSNIG-FVGIAYAAGS  597 (902)
T ss_dssp             EEEECCCSCSEEEEEECBTS-EEEEEETTSE
T ss_pred             eEEEEcCCCcEEEEEecCCc-EEEEEeCCCc
Confidence            45567789999999999999 9999999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-30  Score=241.45  Aligned_cols=264  Identities=16%  Similarity=0.279  Sum_probs=216.6

Q ss_pred             cccCCCCCCe-EEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           79 STSSSPPPTL-LHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~~i-~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ..+.+|.+.| .+  +.++|++|++|+.+ .|++|++.+++..  ..+. +|...|.++.++++  .+++++.|     |
T Consensus       112 ~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~--~l~s~~~d-----g  179 (445)
T 2ovr_B          112 KVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLV-GHTGGVWSSQMRDN--IIISGSTD-----R  179 (445)
T ss_dssp             EEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEE--EECC-CCSSCEEEEEEETT--EEEEEETT-----S
T ss_pred             EEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEE--EEEc-CCCCCEEEEEecCC--EEEEEeCC-----C
Confidence            5677898875 55  44568999999855 5999999887765  6676 78999999999855  66777777     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      .|++||+.+++.+..+. |...|.++.++++....+ .|++|++||+++++.+..+..|...+..+.+  +++.  +++ 
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~~-  254 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRR--VVS-  254 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSC--EEE-
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCE--EEE-
Confidence            99999999999999988 999999999976553333 5999999999999999999999888888877  4543  333 


Q ss_pred             CCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          235 GLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      |+.|+.|++||++++. ...+.+|...|.++.|  ++.+|++++.|+. |++||+++++.+..+..  |...+.++.+  
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~v~~~~~--  327 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMEL--  327 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEE--
T ss_pred             EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcC--CcccEEEEEE--
Confidence            3489999999998854 4567789999999999  8899999999999 99999999999998885  6678888887  


Q ss_pred             CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE---eCCCceEEEecc
Q 015650          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL---VEGSPYIVAFGH  390 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~fs~  390 (403)
                      ++++|++++.||.|++||+++++.                                   +..+..   +...+.+++|  
T Consensus       328 ~~~~l~~~~~dg~i~vwd~~~~~~-----------------------------------~~~~~~~~~~~~~v~~~~~--  370 (445)
T 2ovr_B          328 KDNILVSGNADSTVKIWDIKTGQC-----------------------------------LQTLQGPNKHQSAVTCLQF--  370 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCE-----------------------------------EEEECSTTSCSSCEEEEEE--
T ss_pred             eCCEEEEEeCCCeEEEEECCCCcE-----------------------------------EEEEccCCCCCCCEEEEEE--
Confidence            567999999999999999988763                                   222332   4567888888  


Q ss_pred             CCCEEEEEccCCC
Q 015650          391 QKNTVVILGMDGR  403 (403)
Q Consensus       391 d~~~l~~~~~dG~  403 (403)
                      ++++|++|+.||+
T Consensus       371 ~~~~l~s~~~dg~  383 (445)
T 2ovr_B          371 NKNFVITSSDDGT  383 (445)
T ss_dssp             CSSEEEEEETTSE
T ss_pred             CCCEEEEEeCCCe
Confidence            4789999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-31  Score=261.42  Aligned_cols=243  Identities=15%  Similarity=0.232  Sum_probs=201.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..+.+|...|.+++|+|++++|++|+ |+.|+|||+.++...  ..+. +|...|.+++|++++..+++++.|     ++
T Consensus       424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~l~s~s~D-----~~  495 (694)
T 3dm0_A          424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--RRFV-GHTKDVLSVAFSLDNRQIVSASRD-----RT  495 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEECTTSSCEEEEETT-----SC
T ss_pred             ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce--eEEe-CCCCCEEEEEEeCCCCEEEEEeCC-----CE
Confidence            45788999999999999999999998 555999999887655  5565 799999999999999999999999     99


Q ss_pred             EEEEECCCCceeEEEe----cCCceeEEEEecCc--eEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          158 VMIWDDHQSRCIGELS----FRSEVRSVKLRRDR--IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~--~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      |++||+..........    |...|.+++|+|++  ..++   .|++|++||+++++....+..|...+..++++|+++.
T Consensus       496 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL  575 (694)
T ss_dssp             EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence            9999976554333321    67789999999986  3444   4999999999999999999999999999999999873


Q ss_pred             EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-------
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-------  301 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-------  301 (403)
                        +++ |+.|+.|++||+++++......+...|.+++|+|++.+|++++ ++. |+|||+++++.+..+..+.       
T Consensus       576 --l~s-g~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~  650 (694)
T 3dm0_A          576 --CAS-GGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHG-IKIWDLESKSIVEDLKVDLKAEAEKA  650 (694)
T ss_dssp             --EEE-EETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTE-EEEEETTTTEEEEEECCCCC------
T ss_pred             --EEE-EeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCC-EEEEECCCCCChhhhccccccccccc
Confidence              444 4589999999999876655455677899999999999887765 566 9999999999888775321       


Q ss_pred             ----------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          302 ----------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       302 ----------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                                +...+++++|+|||++|++|+.||.|+||++..
T Consensus       651 ~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             ----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                      112378999999999999999999999999863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-30  Score=243.75  Aligned_cols=240  Identities=16%  Similarity=0.217  Sum_probs=200.1

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeee--CCeEEEeeCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQY  153 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~~  153 (403)
                      ....+.+|.+.|.+++|++++ +|++|+ |+.|++||+++++..  ..+. +|...|.++.+.  +++..+++++.|   
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d---  226 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--HVFE-GHNSTVRCLDIVEYKNIKYIVTGSRD---  226 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEEESSSCEEEEEEETT---
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE--EEEC-CCCCccEEEEEecCCCCCEEEEEcCC---
Confidence            335577899999999999988 777777 555999999988755  5565 788899999887  578899999998   


Q ss_pred             CCceEEEEECCCCcee-----------------------EEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCcee
Q 015650          154 PLNKVMIWDDHQSRCI-----------------------GELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL  206 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~-----------------------~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~  206 (403)
                        +.|++||+.+++..                       ..+. |...+.++  ++++.+++   .|+.|++||+++++.
T Consensus       227 --~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~  302 (464)
T 3v7d_B          227 --NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC  302 (464)
T ss_dssp             --SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE
T ss_pred             --CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE
Confidence              99999999877532                       3333 66777776  45555555   499999999999999


Q ss_pred             eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      +..+..|...+..++++++++.+  ++ |+.|+.|++||++++. ...+.+|...|.+++|+  +++|++++.||. |++
T Consensus       303 ~~~~~~~~~~v~~~~~~~~~~~l--~s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~v  376 (464)
T 3v7d_B          303 LYILSGHTDRIYSTIYDHERKRC--IS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRG  376 (464)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEE--EE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEE
T ss_pred             EEEecCCCCCEEEEEEcCCCCEE--EE-EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEE
Confidence            99999999999999999988743  33 4589999999998754 56678899999999996  589999999999 999


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ||+.+++....+.   +...+..++|++++++|++++ ||.|++||+++++.
T Consensus       377 wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          377 WDANDYSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL  424 (464)
T ss_dssp             EETTTCCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred             EECCCCceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence            9999988777665   556788899999999999998 89999999999884

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-30  Score=233.11  Aligned_cols=246  Identities=17%  Similarity=0.243  Sum_probs=202.0

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ...+.+|...|.+++|+|+|++|++++.++ |++|+.........  .. .+...+....+.+++..+++++.|     +
T Consensus        79 ~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~s~s~d-----~  150 (340)
T 4aow_A           79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR--FV-GHTKDVLSVAFSSDNRQIVSGSRD-----K  150 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EE-CCSSCEEEEEECTTSSCEEEEETT-----S
T ss_pred             eEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeee--ec-CCCCceeEEEEeecCccceeecCC-----C
Confidence            356788999999999999999999998554 99999987766533  32 466677788888888889999988     9


Q ss_pred             eEEEEECCCCceeEEE-e-cCCceeEEEEecCc--eEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          157 KVMIWDDHQSRCIGEL-S-FRSEVRSVKLRRDR--IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~-~-~~~~i~~~~~~~~~--~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      .+++||+......... . |...+..++|++++  .+++   .|+.|++||+++++.+..+..|...+..++|+|+++. 
T Consensus       151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~-  229 (340)
T 4aow_A          151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL-  229 (340)
T ss_dssp             CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-
T ss_pred             eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCE-
Confidence            9999998776544333 2 78899999998864  3444   4899999999999999999999999999999998873 


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec-------CCC
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-------GAD  302 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-------~~~  302 (403)
                       +++ |+.|+.|++||++.........+...+.++.|+|++.++ +++.|+. |+|||++++..+..+..       ..|
T Consensus       230 -l~s-~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~h  305 (340)
T 4aow_A          230 -CAS-GGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAE  305 (340)
T ss_dssp             -EEE-EETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTE-EEEEETTTTEEEEEECCC-------CC
T ss_pred             -EEE-EeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCE-EEEEECCCCeEEEeccccceeeeccCC
Confidence             444 348999999999997766666677889999999998755 5667898 99999998887776653       236


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ...|++++|+|||++|++|+.||.|+|||+++|+
T Consensus       306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            7889999999999999999999999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.8e-31  Score=262.44  Aligned_cols=249  Identities=12%  Similarity=0.159  Sum_probs=208.5

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|...|.+++|+|++++|++|++++ |+||++.+++..  ..+. +|...+.++.|++++..+++++.|     
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-----  118 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--VDFE-AHPDYIRSIAVHPTKPYVLSGSDD-----  118 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSEEEEEETT-----
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--EEEe-cCCCCEEEEEEeCCCCEEEEEcCC-----
Confidence            3455678999999999999999999998555 999999888765  4554 688999999999999999999988     


Q ss_pred             ceEEEEECCCC-ceeEEEe-cCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEeeccC-CCceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQS-RCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  228 (403)
                      |.|++||+.++ .....+. |...|.+++|+| ++..++   .|+.|++||+.+++....+..+. ..+..++++|.++.
T Consensus       119 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (814)
T 3mkq_A          119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK  198 (814)
T ss_dssp             SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC
T ss_pred             CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC
Confidence            99999999987 5666666 899999999999 777776   48999999999888777776554 78899999994333


Q ss_pred             EEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      .++++ ++.|+.|++||++++. ...+..|...|.+++|+|++++|++++.||. |++||+.+++.+..+..  +...+.
T Consensus       199 ~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--~~~~v~  274 (814)
T 3mkq_A          199 PYMIT-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSW  274 (814)
T ss_dssp             CEEEE-ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECC--SSSSEE
T ss_pred             CEEEE-EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeec--CCCcEE
Confidence            34554 3489999999998855 5567789999999999999999999999999 99999999999988886  567999


Q ss_pred             EEEeCCCCC--EEEEEeCCCcEEEEEeecCCCC
Q 015650          308 SLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       308 ~l~~s~d~~--~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      +++|+|++.  +++++ .++.+.+|++......
T Consensus       275 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  306 (814)
T 3mkq_A          275 CIATHPTGRKNYIASG-FDNGFTVLSLGNDEPT  306 (814)
T ss_dssp             EEEECTTCGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred             EEEEccCCCceEEEEE-eCCCEEEEEcCCCCce
Confidence            999999997  45554 5677999998766543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4e-31  Score=240.49  Aligned_cols=238  Identities=13%  Similarity=0.127  Sum_probs=191.5

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           82 SSPPPTLLHISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        82 ~~~~~~i~~i~~s~-d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      .+|...|.+++|+| ++.+|++++. +.|++||+........... ..+...+.++.|++++..+++++.|     +.|+
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~  188 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKT-DSWDYWYCCVDVSVSRQMLATGDST-----GRLL  188 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECC-CCSSCCEEEEEEETTTTEEEEEETT-----SEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEecc-CCCCCCeEEEEECCCCCEEEEECCC-----CCEE
Confidence            47999999999999 7789998884 5599999986433222222 2455789999999999999999999     9999


Q ss_pred             EEECCCCceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCC----ceeeeEeeccCCCceeEEEee-CCCeE
Q 015650          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFAD----LKLLHQIETIANPKGLCAVSQ-GVGSL  229 (403)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~  229 (403)
                      +||+ +++.+..+. |...|.+++|+|++. +++   .|+.|++||+++    ++.+..+ .|...+..++|+| +++. 
T Consensus       189 i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~-  265 (383)
T 3ei3_B          189 LLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTK-  265 (383)
T ss_dssp             EEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCE-
T ss_pred             EEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCE-
Confidence            9998 577788887 999999999999987 565   489999999998    5566666 6888999999999 7764 


Q ss_pred             EEEeeCCccCeEEEEEccCCc-eeEEeecC-----------------CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 015650          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHD-----------------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~-----------------~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~  291 (403)
                       +++ ++.|+.|++||+++.. ...+..|.                 ..+..++|+|++++  +++.|+. |+|||+.++
T Consensus       266 -l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~~  340 (383)
T 3ei3_B          266 -LLT-TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANSG  340 (383)
T ss_dssp             -EEE-EESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTTC
T ss_pred             -EEE-EcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCCC
Confidence             333 3479999999998743 34444332                 33445667777766  7788999 999999999


Q ss_pred             cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      +++..+..+.+...+..++|+|++++|++++ ||.|+|||+++
T Consensus       341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          341 GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            9999998765667788889999999999997 99999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-30  Score=233.94  Aligned_cols=252  Identities=8%  Similarity=0.092  Sum_probs=210.6

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      .....+.+|...|.+++|+|++++|++++.+ .|++|++.+++..  ..+.  +...+.++.|++++..++++..+....
T Consensus        65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~  140 (369)
T 3zwl_B           65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV--ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKN  140 (369)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--EEEE--CSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred             hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEee--cCCCeEEEEEccCCCEEEEecCCccCC
Confidence            3446677899999999999999999999855 4999999888766  4454  667899999999988887765432222


Q ss_pred             CceEEEEECCCCce-----------eEEEe-cCC--ceeEEEEecCceEEE---ecCeEEEEEcCC-ceeeeEeeccCCC
Q 015650          155 LNKVMIWDDHQSRC-----------IGELS-FRS--EVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQIETIANP  216 (403)
Q Consensus       155 ~~~i~iwd~~~~~~-----------~~~~~-~~~--~i~~~~~~~~~~~~~---~d~~i~i~d~~~-~~~~~~~~~~~~~  216 (403)
                      ++.|++||+..+..           +..+. +..  .+.+++|+|++.+++   .|+.|++||+++ ++.+..+..+...
T Consensus       141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  220 (369)
T 3zwl_B          141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS  220 (369)
T ss_dssp             CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC
T ss_pred             CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc
Confidence            27999999877642           22333 444  899999999998887   489999999998 7888889889999


Q ss_pred             ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC--------------cE
Q 015650          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--------------TL  282 (403)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg--------------~~  282 (403)
                      +..++|+++++.++  + ++.|+.|++||+++........+...+.+++|+|+++++++++.++              . 
T Consensus       221 v~~~~~~~~~~~l~--~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-  296 (369)
T 3zwl_B          221 ISDMQFSPDLTYFI--T-SSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE-  296 (369)
T ss_dssp             EEEEEECTTSSEEE--E-EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE-
T ss_pred             eeEEEECCCCCEEE--E-ecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce-
Confidence            99999999887543  3 3479999999999977766666889999999999999999999888              7 


Q ss_pred             EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      +++||+.+++.+..+..  |...|++++|+|++++|++++.||.|++|+++++..
T Consensus       297 i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          297 ARFYHKIFEEEIGRVQG--HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             eEEEecCCCcchhheec--ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence            99999999999999986  678999999999999999999999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.7e-31  Score=239.43  Aligned_cols=248  Identities=8%  Similarity=0.036  Sum_probs=204.1

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ...+.+|...|.+++|+|++++|++++.+ .|++|++.+.+......+. .|...+.++.|++++..+++++.+     +
T Consensus        45 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----~  118 (372)
T 1k8k_C           45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGS-----R  118 (372)
T ss_dssp             EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             eeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCCEEEEEeCC-----C
Confidence            35567899999999999999999999854 5999999887755444444 688899999999999999999988     9


Q ss_pred             eEEEEECCCCce---eEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEc------------------CCceeeeEe
Q 015650          157 KVMIWDDHQSRC---IGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNF------------------ADLKLLHQI  210 (403)
Q Consensus       157 ~i~iwd~~~~~~---~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~------------------~~~~~~~~~  210 (403)
                      .|++||+..++.   ...+.  |...|.+++|+|++.+++   .|+.|++||+                  ..++.+..+
T Consensus       119 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          119 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            999999988763   33343  788999999999998877   3899999995                  367788888


Q ss_pred             eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      ..|...+..++|+++++.  +++ ++.|+.|++||++++ .+..+..|...|.+++|+|++++|+++ .|+. |++||+.
T Consensus       199 ~~~~~~v~~~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~  273 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSR--VAW-VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYD  273 (372)
T ss_dssp             CCCSSCEEEEEECSSSSE--EEE-EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEE
T ss_pred             CCCCCeEEEEEECCCCCE--EEE-EeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEcc
Confidence            888899999999998874  333 348999999999874 456678899999999999999988877 8999 9999998


Q ss_pred             C--CcE--E------------------------------------EEEecCCCcccEEEEEeC-CCC---CEEEEEeCCC
Q 015650          290 D--GTL--L------------------------------------QEVRRGADRAEIYSLAFS-SNA---QWLAVSSDKG  325 (403)
Q Consensus       290 ~--~~~--~------------------------------------~~~~~~~~~~~v~~l~~s-~d~---~~l~s~~~dg  325 (403)
                      +  ++.  +                                    ..+. ..|...|++++|. ++|   .+|++++.||
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg  352 (372)
T 1k8k_C          274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDG  352 (372)
T ss_dssp             TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred             CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCC
Confidence            7  421  0                                    1122 1378899999966 676   9999999999


Q ss_pred             cEEEEEeecCCC
Q 015650          326 TVHVFNLKVNSG  337 (403)
Q Consensus       326 ~v~iwd~~~~~~  337 (403)
                      .|++||+++++.
T Consensus       353 ~i~~W~~~~~~~  364 (372)
T 1k8k_C          353 GMSIWDVRSLES  364 (372)
T ss_dssp             EEEEEEHHHHHH
T ss_pred             ceEEEEecChhH
Confidence            999999998763

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-32  Score=249.96  Aligned_cols=232  Identities=13%  Similarity=0.108  Sum_probs=188.1

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC--ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEc
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNF  201 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~  201 (403)
                      +...|.+++|++++.++++++.|     +.|++||+.++  +.+..+. |...|.+++|+|++.+++   .|++|++||+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCCcEEEEEECCCCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            45678999999999999999988     99999999988  6777777 899999999999998877   3899999999


Q ss_pred             CCce---eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc----eeEEee-cCCceEEEEEcCCCCEE
Q 015650          202 ADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMA-HDSRIACFALTQDGQLL  273 (403)
Q Consensus       202 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~----~~~~~~-~~~~i~~~~~sp~g~~l  273 (403)
                      .+++   ....+..|...+..++|+++++.++.+   +.|+.|++||++.+.    ...+.. |...|.+++|+|++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG---SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEE---ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEE---ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            9876   566677889999999999988754433   479999999999865    566776 99999999999999999


Q ss_pred             EEEeCCCcEEEEEEcC------------------CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          274 ATSSTKGTLVRIFNTL------------------DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       274 ~s~~~dg~~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      ++++.|+. |++||+.                  .++++..+   .|...|.+++|+|++++|++++.||.|++||+.++
T Consensus       162 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          162 AAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            99999999 9999985                  34455555   37889999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      +....                               .+..+..|...+..++|+|++++|++|+.|+
T Consensus       238 ~~~~~-------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          238 EQPPR-------------------------------ALITVKLSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             TSCEE-------------------------------ECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             CCcce-------------------------------eeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence            74110                               0223566778899999999999999998775

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-31  Score=239.32  Aligned_cols=240  Identities=13%  Similarity=0.159  Sum_probs=197.0

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC--CCceeEEEe-cCCceeEEEEecC--ceEEE---ec
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRD--RIIVV---LE  193 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~--~~~~~~~~~-~~~~i~~~~~~~~--~~~~~---~d  193 (403)
                      ..+. +|...|.+++|++++..+++++.|     |.|++||+.  +++.+..+. |...|.+++|+++  +.+++   .|
T Consensus         5 ~~~~-~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            5 VIAN-AHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             CCEE-ECCCCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EEec-CCcccEEEEEEcCCCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            3444 799999999999999999999988     999999998  556777777 8999999999876  77777   48


Q ss_pred             CeEEEEEcCCce--eeeEeeccCCCceeEEEeeC--CCeEEEEeeCCccCeEEEEEccCC---ceeEEeecCCceEEEEE
Q 015650          194 QKIFVYNFADLK--LLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFAL  266 (403)
Q Consensus       194 ~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~v~d~~~~---~~~~~~~~~~~i~~~~~  266 (403)
                      +.|++||+++++  .+..+..|...+..++|+++  ++.  +++ ++.|+.|++||++..   ....+..|...|.+++|
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~  155 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--LLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW  155 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--EEE-EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE--EEE-ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEE
Confidence            999999999886  67777788899999999998  553  333 348999999999885   34566789999999999


Q ss_pred             cC-------------CCCEEEEEeCCCcEEEEEEcCCCc----EEEEEecCCCcccEEEEEeCCC---CCEEEEEeCCCc
Q 015650          267 TQ-------------DGQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSN---AQWLAVSSDKGT  326 (403)
Q Consensus       267 sp-------------~g~~l~s~~~dg~~i~iwd~~~~~----~~~~~~~~~~~~~v~~l~~s~d---~~~l~s~~~dg~  326 (403)
                      +|             ++.+|++++.|+. |++||+++++    .+..+..  |...|.+++|+|+   +++|++++.||.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence            99             6999999999999 9999998764    3344543  7789999999999   899999999999


Q ss_pred             EEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          327 VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       327 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      |++||+++++.....                              .......+...+..++|+|++++|++++.||+
T Consensus       233 i~iwd~~~~~~~~~~------------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  279 (379)
T 3jrp_A          233 CIIWTQDNEQGPWKK------------------------------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  279 (379)
T ss_dssp             EEEEEESSTTSCCEE------------------------------EESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred             EEEEeCCCCCcccee------------------------------eeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence            999999987631100                              00001224568899999999999999999984

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.8e-31  Score=244.36  Aligned_cols=267  Identities=11%  Similarity=0.119  Sum_probs=209.6

Q ss_pred             CeEEEEEcCCCCEEEE-Ec-CCcEEEEEcCCCeeE--EEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEE
Q 015650           87 TLLHISFNQDHGCFAA-GT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~-~~-~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      ....++++|+...+++ ++ ++.|+||++......  ....+. +|...|.++.|++ ++..+++++.|     |.|++|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~d-----g~v~vw  109 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSED-----CTVMVW  109 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETT-----SEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCC-----CeEEEE
Confidence            3446889988765553 44 555999998654332  112344 7899999999999 88899999998     999999


Q ss_pred             ECCCC-------ceeEEEe-cCCceeEEEEecCc-eEEE---ecCeEEEEEcCCceeeeEe--eccCCCceeEEEeeCCC
Q 015650          162 DDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVG  227 (403)
Q Consensus       162 d~~~~-------~~~~~~~-~~~~i~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~  227 (403)
                      |+.++       +.+..+. |...|.+++|+|++ .+++   .|+.|++||+++++.+..+  ..|...+..++|+++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  189 (402)
T 2aq5_A          110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA  189 (402)
T ss_dssp             ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred             EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence            99988       5677777 99999999999997 4665   4899999999999999998  78899999999999887


Q ss_pred             eEEEEeeCCccCeEEEEEccCCce-eEE-eecCCc-eEEEEEcCCCCEEEEE---eCCCcEEEEEEcCCCcE-EEEEecC
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRT-KFI-MAHDSR-IACFALTQDGQLLATS---STKGTLVRIFNTLDGTL-LQEVRRG  300 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~-~~~-~~~~~~-i~~~~~sp~g~~l~s~---~~dg~~i~iwd~~~~~~-~~~~~~~  300 (403)
                      .++.   ++.|+.|++||++.+.. ..+ ..|.+. +.++.|+|++++|++|   +.|+. |++||+++++. +..... 
T Consensus       190 ~l~~---~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~-  264 (402)
T 2aq5_A          190 LICT---SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQEL-  264 (402)
T ss_dssp             CEEE---EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEEC-
T ss_pred             EEEE---EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEec-
Confidence            5433   34899999999998654 444 577765 8999999999999999   78999 99999988764 333332 


Q ss_pred             CCcccEEEEEeCCCCCEEEE-EeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE-
Q 015650          301 ADRAEIYSLAFSSNAQWLAV-SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-  378 (403)
Q Consensus       301 ~~~~~v~~l~~s~d~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  378 (403)
                      .+...+.+++|+|++++|++ ++.||.|++||+.+++..                                  +..+.. 
T Consensus       265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~----------------------------------~~~l~~~  310 (402)
T 2aq5_A          265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF----------------------------------LHYLSMF  310 (402)
T ss_dssp             CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC----------------------------------EEEEEEE
T ss_pred             cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc----------------------------------eEeeccc
Confidence            25678999999999999975 557999999999987730                                  111222 


Q ss_pred             -eCCCceEEEeccCCCEEEEE
Q 015650          379 -VEGSPYIVAFGHQKNTVVIL  398 (403)
Q Consensus       379 -~~~~~~~~~fs~d~~~l~~~  398 (403)
                       +.+.+..++|+|++.+++++
T Consensus       311 ~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          311 SSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             CCSSCCSEEEECCGGGSCGGG
T ss_pred             ccCCcccceEEecccccceec
Confidence             34788889999998877654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.3e-31  Score=237.55  Aligned_cols=240  Identities=19%  Similarity=0.240  Sum_probs=193.7

Q ss_pred             CCCCCCeEEEEEcCC---CCEEEEEc-CCcEEEEEcCCCe-eEEEEecccCcceeEEEE------eeeCCeEEEeeCCCC
Q 015650           82 SSPPPTLLHISFNQD---HGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEM------LFRCNILALVGGGPD  150 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d---~~~l~~~~-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~------~~~~~~~~~~s~~~d  150 (403)
                      .+|...|.+++|+|+   +.+|++|+ ++.|++|++.+.+ ..  ..+. +|...+.++      +|++++..+++++.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV--YSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS--EEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE--EEEE-ecccceEEEeeccccccCCCccEEEEEeCC
Confidence            478999999999999   69999988 4559999998776 33  4454 688889988      456788899999998


Q ss_pred             CCCCCceEEEEECCCCc-eeEEEe-cC----CceeEEE----EecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCc
Q 015650          151 PQYPLNKVMIWDDHQSR-CIGELS-FR----SEVRSVK----LRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK  217 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~~~-~~~~~~-~~----~~i~~~~----~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~  217 (403)
                           +.|++||+.+++ .+..+. +.    ..+.+++    |++++.+++   .|+.|++||+++++.... ..+...+
T Consensus       139 -----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v  212 (357)
T 3i2n_A          139 -----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGV  212 (357)
T ss_dssp             -----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCE
T ss_pred             -----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCce
Confidence                 999999999987 677775 33    3788888    678888887   379999999999887544 4677889


Q ss_pred             eeEEEee---CCCeEEEEeeCCccCeEEEEEccCCc-ee-----EEeecCCceEEEEEcCCCC-EEEEEeCCCcEEEEEE
Q 015650          218 GLCAVSQ---GVGSLVLVCPGLQKGQVRVEHYASKR-TK-----FIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFN  287 (403)
Q Consensus       218 ~~~~~~~---~~~~~~~~~~g~~d~~i~v~d~~~~~-~~-----~~~~~~~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd  287 (403)
                      ..++|+|   +++.+  ++ ++.|+.|++||++.+. ..     .+..|...|.+++|+|+++ +|++++.||. |++||
T Consensus       213 ~~~~~~~~~~~~~~l--~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd  288 (357)
T 3i2n_A          213 CSLEFDRKDISMNKL--VA-TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWK  288 (357)
T ss_dssp             EEEEESCSSSSCCEE--EE-EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEE
T ss_pred             EEEEcCCCCCCCCEE--EE-ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEee
Confidence            9999999   66643  33 3489999999998743 22     2348999999999999998 8999999999 99999


Q ss_pred             cCCC-------------------cEEEEEecCCCcccEEEEEeCCCCCEEE-EEeCCCcEEEEEeecCC
Q 015650          288 TLDG-------------------TLLQEVRRGADRAEIYSLAFSSNAQWLA-VSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       288 ~~~~-------------------~~~~~~~~~~~~~~v~~l~~s~d~~~l~-s~~~dg~v~iwd~~~~~  336 (403)
                      ++++                   +.+..+..  |...|++++|+|++++|+ +++.||.|++||+.+.+
T Consensus       289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EECCSCC--CCTTSCCCCCCCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             cCCCcccccccCCCCccccccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            9754                   35556664  678999999999999998 89999999999998865

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=262.27  Aligned_cols=249  Identities=15%  Similarity=0.150  Sum_probs=202.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCC--eEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~  155 (403)
                      .++.+|.+.|++++|+|++++|++|+.++ |+||++..........+. +|...|.++.|+++  +..+++++.|     
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~D-----   76 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----   76 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETT-----
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCC-----
Confidence            45789999999999999999999998554 999999866655556776 78999999999887  8899999998     


Q ss_pred             ceEEEEECCCCc--eeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCce--eeeEeeccCCCceeEEEeeC
Q 015650          156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQG  225 (403)
Q Consensus       156 ~~i~iwd~~~~~--~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~  225 (403)
                      |.|++||+.+++  .+..+. |...|.+++|+|+  +.+++   .||.|++||++++.  ....+..|...+..++++|.
T Consensus        77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            999999999986  555565 8999999999998  77777   48999999998863  34556778889999999984


Q ss_pred             -------------CCeEEEEeeCCccCeEEEEEccCCc-----eeEEeecCCceEEEEEcCC---CCEEEEEeCCCcEEE
Q 015650          226 -------------VGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVR  284 (403)
Q Consensus       226 -------------~~~~~~~~~g~~d~~i~v~d~~~~~-----~~~~~~~~~~i~~~~~sp~---g~~l~s~~~dg~~i~  284 (403)
                                   +.  ++++ |+.||.|++||++...     ...+.+|...|.+++|+|+   +++|++++.||. |+
T Consensus       157 ~~~~~~~~~~~~d~~--~l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~  232 (753)
T 3jro_A          157 TIEEDGEHNGTKESR--KFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CI  232 (753)
T ss_dssp             C---------CGGGC--CEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EE
T ss_pred             ccccccccccCCCCC--EEEE-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EE
Confidence                         44  3343 3479999999998742     3456789999999999999   999999999999 99


Q ss_pred             EEEcCCCcEE---EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          285 IFNTLDGTLL---QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       285 iwd~~~~~~~---~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      +||+.+++..   .......|...|++++|+|+|++|++++.||.|++|+++++..
T Consensus       233 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             EEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             EecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence            9999886421   1122223678899999999999999999999999999997553

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1e-31  Score=246.49  Aligned_cols=252  Identities=10%  Similarity=0.026  Sum_probs=198.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      +.-...|.+++|+|||+++|++++++ |+  +....     ..+. +|...+..++|+|++       .+     +.+.+
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----~~l~-gh~~~v~~V~FsPdg-------~~-----~~~~~   71 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----KDIN-CNSKNLFHVKEFPLE-------FE-----NKLDF   71 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----SCCS-SBGGGTEEEEEECCC-------CC-----CTTTT
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--ccccc-----ceec-CCCccEEEEEECCCC-------Cc-----ceEEE
Confidence            44567899999999999999999555 88  64433     3344 799999999999998       33     66666


Q ss_pred             EECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCC-----CceeEEEeeCCCeEEEE
Q 015650          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       161 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  232 (403)
                      |+.+ +..+..+.+...|.+++|+|+|..++   .||.|++||...  ++..+. |..     .+..++|+|+++.++.+
T Consensus        72 ~~~~-~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg  147 (588)
T 2j04_A           72 ELAQ-QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG  147 (588)
T ss_dssp             SCCC-SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred             EeCC-CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence            6643 22333445688899999999999888   499999999543  566666 554     48899999999854433


Q ss_pred             eeCCccCeEEEEEccCCc--------eeEE----eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE---EEEE
Q 015650          233 CPGLQKGQVRVEHYASKR--------TKFI----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL---LQEV  297 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~--------~~~~----~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~---~~~~  297 (403)
                         +.||+|++||+..+.        +..+    .+|...|.+++|+|||  |++++.|+. |++||+.+++.   .+++
T Consensus       148 ---s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL  221 (588)
T 2j04_A          148 ---NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMI  221 (588)
T ss_dssp             ---ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEE
T ss_pred             ---cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeee
Confidence               489999999999874        3555    5677899999999999  788899999 99999988773   3556


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEE
Q 015650          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR  377 (403)
Q Consensus       298 ~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (403)
                      ..+ |...|.+++|+  |++||+++ +++|++||+.+++.                                    ..+.
T Consensus       222 ~~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~------------------------------------~~~~  261 (588)
T 2j04_A          222 QNA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI------------------------------------SSLK  261 (588)
T ss_dssp             ECC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE------------------------------------EEEE
T ss_pred             ccc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE------------------------------------EEEE
Confidence            432 66899999999  68999987 69999999998762                                    1122


Q ss_pred             -EeCCCceEEEe--ccCCCEEEEEccCCC
Q 015650          378 -LVEGSPYIVAF--GHQKNTVVILGMDGR  403 (403)
Q Consensus       378 -~~~~~~~~~~f--s~d~~~l~~~~~dG~  403 (403)
                       +|.+.++.++|  +||+..|+++++||+
T Consensus       262 ~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          262 TGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             CSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             cCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence             67789999999  999999999999984

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=6.2e-31  Score=240.82  Aligned_cols=249  Identities=11%  Similarity=0.128  Sum_probs=203.3

Q ss_pred             ccccCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEcCCCee-----EEEEecccCcceeEEEEeeeCCe-EEEeeCCC
Q 015650           78 ESTSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNI-LALVGGGP  149 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~-d~~~l~~~~~~~-i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~  149 (403)
                      ...+.+|.+.|++++|+| ++.+|++|+.++ |+||++.+...     .....+. +|...|.++.|++++ ..+++++.
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcC
Confidence            345778999999999999 999999998555 99999987632     1124454 688999999999998 68888888


Q ss_pred             CCCCCCceEEEEECCCCceeEEE--e-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe-eccCCC-ceeEE
Q 015650          150 DPQYPLNKVMIWDDHQSRCIGEL--S-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-ETIANP-KGLCA  221 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~-~~~~~  221 (403)
                      |     +.|++||+.+++.+..+  . |...|.+++|+|++.+++   .|+.|++||+++++.+..+ ..|... +..+.
T Consensus       153 d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (402)
T 2aq5_A          153 D-----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV  227 (402)
T ss_dssp             T-----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred             C-----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence            8     99999999999999998  5 899999999999998777   4899999999999998888 666665 78899


Q ss_pred             EeeCCCeEEEEee--CCccCeEEEEEccCCce--eEE-eecCCceEEEEEcCCCCEEEE-EeCCCcEEEEEEcCCCcE-E
Q 015650          222 VSQGVGSLVLVCP--GLQKGQVRVEHYASKRT--KFI-MAHDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTL-L  294 (403)
Q Consensus       222 ~~~~~~~~~~~~~--g~~d~~i~v~d~~~~~~--~~~-~~~~~~i~~~~~sp~g~~l~s-~~~dg~~i~iwd~~~~~~-~  294 (403)
                      |++++.  +++++  ++.|+.|++||++....  ... ..|...+.+++|+|++++|++ ++.|+. |++||+.+++. +
T Consensus       228 ~~~~~~--~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~  304 (402)
T 2aq5_A          228 FVSEGK--ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFL  304 (402)
T ss_dssp             ECSTTE--EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCE
T ss_pred             EcCCCc--EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcce
Confidence            998865  34432  15799999999988442  222 357788999999999999975 557999 99999998874 5


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       295 ~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ..+..+.+...|.+++|+|++.++++  .++.+++|++.+++.
T Consensus       305 ~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          305 HYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             EeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            55555446689999999999998875  567999999998653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=9e-30  Score=235.34  Aligned_cols=270  Identities=10%  Similarity=0.048  Sum_probs=218.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEE---ecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      ..+.+++|+|++.+++++.+++ |++||+.+++.....   .+. +|...+.++.|++++..+++++.+     +.|++|
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~  196 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVSQMQA-----NAVHVF  196 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEEECCC-----CEEEEE
Confidence            4566899999777777777554 999999887765221   222 577789999999999999999988     999999


Q ss_pred             ECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      |+.+++.+..+. +...+.+++|+|++..++    .++.|++||+++++.+..+..+ ..+..++++|+++.++++..+.
T Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~  275 (433)
T 3bws_A          197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSA  275 (433)
T ss_dssp             ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEES
T ss_pred             ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCC
Confidence            999999998887 888999999999987664    3789999999999888877653 3478889999988665554221


Q ss_pred             -----ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEE-EEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          237 -----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       237 -----~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l-~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                           .|+.|++||+++++......|...+.+++|+|++++| ++++.++. |++||+.+++.+..+.   +...+.+++
T Consensus       276 ~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~---~~~~~~~~~  351 (433)
T 3bws_A          276 SNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIP---VFDKPNTIA  351 (433)
T ss_dssp             CTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSSEEEEE
T ss_pred             CccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEec---CCCCCCeEE
Confidence                 4789999999988777666777789999999999765 56688898 9999999999888887   557899999


Q ss_pred             eCCCCCEEEEEeC---------------CCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEE
Q 015650          311 FSSNAQWLAVSSD---------------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ  375 (403)
Q Consensus       311 ~s~d~~~l~s~~~---------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (403)
                      |+|+|++|++++.               ||.|++||+.+++.                                   ...
T Consensus       352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~-----------------------------------~~~  396 (433)
T 3bws_A          352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-----------------------------------KEF  396 (433)
T ss_dssp             ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE-----------------------------------EEE
T ss_pred             EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE-----------------------------------EEE
Confidence            9999999988876               57999999988763                                   111


Q ss_pred             EEEeCCCceEEEeccCCCEEEEEcc-CC
Q 015650          376 FRLVEGSPYIVAFGHQKNTVVILGM-DG  402 (403)
Q Consensus       376 ~~~~~~~~~~~~fs~d~~~l~~~~~-dG  402 (403)
                      +.. ...+..++|+|||++|++++. ||
T Consensus       397 ~~~-~~~~~~~~~s~dg~~l~~~~~~d~  423 (433)
T 3bws_A          397 WEA-GNQPTGLDVSPDNRYLVISDFLDH  423 (433)
T ss_dssp             EEC-SSSEEEEEECTTSCEEEEEETTTT
T ss_pred             ecC-CCCCceEEEcCCCCEEEEEECCCC
Confidence            222 457889999999999998875 66

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=1e-30  Score=241.38  Aligned_cols=247  Identities=12%  Similarity=0.157  Sum_probs=202.2

Q ss_pred             cccCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEcCCC--------eeEEEEecccCcceeEEEEeeeCCeE-EEeeC
Q 015650           79 STSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPF--------REIFRRDFERGGGIGVVEMLFRCNIL-ALVGG  147 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d-~~~l~~~~~~~-i~iw~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~  147 (403)
                      .....|.+.|++++|+|+ +.+|++++.++ |+||++...        .......+. +|...+.++.|++++. .++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEE
Confidence            445679999999999997 67899988555 999999751        112224454 6888999999999887 88888


Q ss_pred             CCCCCCCCceEEEEECCCCce-------eEEEe-cCCceeEEEEec-CceEEE---ecCeEEEEEcCCc---eeeeEeec
Q 015650          148 GPDPQYPLNKVMIWDDHQSRC-------IGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL---KLLHQIET  212 (403)
Q Consensus       148 ~~d~~~~~~~i~iwd~~~~~~-------~~~~~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~---~~~~~~~~  212 (403)
                      +.|     |.|++|++.++..       ...+. |...|.+++|+| ++.+++   .|+.|++||++++   +.+..+..
T Consensus       201 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          201 SDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             CTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            888     9999999987422       34444 888999999999 556665   3899999999986   56777888


Q ss_pred             cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCC-EEEEEeCCCcEEEEEEcC
Q 015650          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~  289 (403)
                      |...+..++|+|++..++++  |+.||.|++||++.  ..+..+..|...|.+++|+|+++ +|++++.|+. |+|||+.
T Consensus       276 ~~~~v~~i~~~p~~~~~l~t--g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~  352 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILAT--GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLS  352 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGG
T ss_pred             CCCCeEEEEeCCCCCCEEEE--EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCC
Confidence            89999999999998765443  35899999999987  44677888999999999999985 6899999999 9999997


Q ss_pred             C--------------CcEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCC
Q 015650          290 D--------------GTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       290 ~--------------~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .              .+.+..+.+  |...|++++|+|+++ +|++++.||.|+||++....
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             CCccccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            6              255555554  678899999999999 89999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=2.4e-30  Score=238.94  Aligned_cols=246  Identities=13%  Similarity=0.122  Sum_probs=194.7

Q ss_pred             CcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCC----------CceeEEEe-cCCceeEEEEecCce-EEE--
Q 015650          127 GGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ----------SRCIGELS-FRSEVRSVKLRRDRI-IVV--  191 (403)
Q Consensus       127 ~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~----------~~~~~~~~-~~~~i~~~~~~~~~~-~~~--  191 (403)
                      .|...|.++.|+++ ..++++++.+     |.|++|++.+          .+.+..+. |...|.+++|+|++. +++  
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~d-----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPS-----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSS-----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCC-----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            48889999999997 7789999888     9999999987          56677777 899999999999876 665  


Q ss_pred             -ecCeEEEEEcCCcee-------eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC----ceeEEeecCC
Q 015650          192 -LEQKIFVYNFADLKL-------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDS  259 (403)
Q Consensus       192 -~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~  259 (403)
                       .||.|++||+.++..       ...+..|...+..++|+|++..++++  ++.|+.|++||++..    ....+..|..
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS--VADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE--EeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence             489999999987322       45566788889999999966554443  347999999999975    4566778999


Q ss_pred             ceEEEEEcCCCC-EEEEEeCCCcEEEEEEcCC-CcEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCC
Q 015650          260 RIACFALTQDGQ-LLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       260 ~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .|.+++|+|++. +|++|+.||. |++||+++ .+++..+..  |...|.+++|+|+++ +|++++.||.|+|||+....
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            999999999987 6889999999 99999998 566777775  678999999999995 68999999999999999854


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCC-EEEEEccCCC
Q 015650          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGMDGR  403 (403)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~-~l~~~~~dG~  403 (403)
                      ......           .   . ....+      ..+.....|.+.+..++|+|+++ .|++++.||+
T Consensus       356 ~~~~~~-----------~---~-~~~~~------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          356 EEQSTE-----------D---A-EDGPP------ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             CCCCHH-----------H---H-HHCCT------TEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             cccCcc-----------c---c-ccCCc------ceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence            321100           0   0 00000      01223456677899999999999 8999999884

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.3e-30  Score=233.56  Aligned_cols=227  Identities=9%  Similarity=0.058  Sum_probs=175.2

Q ss_pred             EEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC------
Q 015650           92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------  164 (403)
Q Consensus        92 ~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~------  164 (403)
                      .+.+++.+|++|+ |+.|++||+.+++....  +.   ...+..+.++++   +++++.|     +.|++|+..      
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~--~~---~~~v~~~~~~~~---~~s~s~D-----~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITT--IT---TPNPRTGGEHPA---IISRGPC-----NRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEE--EE---EECCCTTCCCCS---EEEECST-----TEEEEEETTTEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEE--Ee---cCCceeeeeCCc---eEEecCC-----CeEEEEEccCceEEe
Confidence            3456788999998 55599999988776532  32   245566677777   7888888     999999654      


Q ss_pred             ---CCceeEEEe--cCCceeEEEEec--CceEEE---ecCeEEEEEcCCceeeeEee-ccCCCceeEEEeeCCCeEEEEe
Q 015650          165 ---QSRCIGELS--FRSEVRSVKLRR--DRIIVV---LEQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       165 ---~~~~~~~~~--~~~~i~~~~~~~--~~~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                         +++.+..+.  |...|.+++|+|  ++.+++   .|++|++||+++++.+.... .+...+..++|+|++.  ++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~--~las  187 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL--LLAL  187 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC--EEEE
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC--EEEE
Confidence               555555555  668899999999  998887   49999999999998876663 3455788999999876  4444


Q ss_pred             eCCccCeEEEEEccCCce--eEEee-cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC-CCcccE--E
Q 015650          234 PGLQKGQVRVEHYASKRT--KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEI--Y  307 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~--~~~~~-~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v--~  307 (403)
                       |+.|+.|++||++++..  ..+.. |...|.+++|+|+|.+|++++. +. |++||+++++.+..+... .|...+  .
T Consensus       188 -g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          188 -YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             -ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred             -EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCCCCcceeecccccccccccce
Confidence             45899999999998664  46777 9999999999999999999994 48 999999988765544320 011223  4


Q ss_pred             EEEeCCCCCEEEEEeC-CCcEEEEEeecCC
Q 015650          308 SLAFSSNAQWLAVSSD-KGTVHVFNLKVNS  336 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~-dg~v~iwd~~~~~  336 (403)
                      +++|+|+|++|++++. |+.|+||++++..
T Consensus       265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            6999999999999998 9999999998766

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.7e-31  Score=246.38  Aligned_cols=242  Identities=11%  Similarity=0.076  Sum_probs=189.8

Q ss_pred             cCCCCCCeEEEEEcCC------CCEEEEEc-CCcEEEEEcCCCeeE---------EEEecccCcceeEEEEeeeCCeEEE
Q 015650           81 SSSPPPTLLHISFNQD------HGCFAAGT-DHGFRIYNCDPFREI---------FRRDFERGGGIGVVEMLFRCNILAL  144 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d------~~~l~~~~-~~~i~iw~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~  144 (403)
                      +.+|.+.|.+++|+|+      +.+||+++ |+.|+||++......         ....+. +|...+.+++|+++. .|
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS-EE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC-eE
Confidence            4567889999999997      57999888 555999999765321         012344 678899999998876 58


Q ss_pred             eeCCCCCCCCCceEEEEECCCCc-eeEEEe-cCCceeEE--EEecCc-eEEE---ecCeEEEEEcCCceeeeEeeccCC-
Q 015650          145 VGGGPDPQYPLNKVMIWDDHQSR-CIGELS-FRSEVRSV--KLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIAN-  215 (403)
Q Consensus       145 ~s~~~d~~~~~~~i~iwd~~~~~-~~~~~~-~~~~i~~~--~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-  215 (403)
                      ++++.|     |+|++||+.+++ +...+. |...|.++  .|++++ .+++   .|++|++||+++++++..+.+|.. 
T Consensus       281 asgs~D-----gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          281 VCGFKN-----GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             EEEETT-----SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             EEEeCC-----CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            888888     999999999774 445566 99999999  578887 6766   499999999999888777766653 


Q ss_pred             -CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC--
Q 015650          216 -PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--  291 (403)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~--  291 (403)
                       .+..++|+|++..  +++ ++.|+.|++||++... ...+.+|...|.+++|+|+|++|++|+.|++ |++||+..+  
T Consensus       356 ~~v~~v~fsp~~~~--l~s-~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~  431 (524)
T 2j04_B          356 SNLVPVVYCPQIYS--YIY-SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLL  431 (524)
T ss_dssp             CSCCCEEEETTTTE--EEE-ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTT
T ss_pred             CcccceEeCCCcCe--EEE-eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhc
Confidence             4678999998774  343 3478999999999855 4678899999999999999999999999999 999985321  


Q ss_pred             ------------------------------------------cEEEEEecCCCcccEEEEEeCCCCC---EEEEEeCCCc
Q 015650          292 ------------------------------------------TLLQEVRRGADRAEIYSLAFSSNAQ---WLAVSSDKGT  326 (403)
Q Consensus       292 ------------------------------------------~~~~~~~~~~~~~~v~~l~~s~d~~---~l~s~~~dg~  326 (403)
                                                                .++..+.  .|...|.+++|+|++.   +||+|+.||.
T Consensus       432 ~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~  509 (524)
T 2j04_B          432 HGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGL  509 (524)
T ss_dssp             TCC------CCCCEEEECBCCSSSCEEEECCCCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred             cccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCce
Confidence                                                      0111111  2567899999999964   9999999999


Q ss_pred             EEEEEeecC
Q 015650          327 VHVFNLKVN  335 (403)
Q Consensus       327 v~iwd~~~~  335 (403)
                      |+||+++-.
T Consensus       510 vrlw~l~~~  518 (524)
T 2j04_B          510 LTLEYLSLE  518 (524)
T ss_dssp             EEEEECSCC
T ss_pred             EEEEEcccc
Confidence            999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=222.95  Aligned_cols=241  Identities=15%  Similarity=0.208  Sum_probs=197.7

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee-EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ......|...|.+++|+|++++|++++.++ |++|++..... .....+. +|...+.++.|.++  .+++++.|     
T Consensus        52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~--~l~~~~~d-----  123 (313)
T 3odt_A           52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSFQDG--VVISGSWD-----  123 (313)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEEETT--EEEEEETT-----
T ss_pred             EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEecCC--EEEEEeCC-----
Confidence            355667899999999999999999998555 99999865421 1124444 68889999999544  56666777     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEeec-cCCCceeEEEeeCCCeE
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  229 (403)
                      +.|++||  .++.+..+. |...+.++.|.+ ++.+++   .|+.|++||  ..+....+.. +...+..+++++++.  
T Consensus       124 ~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~--  197 (313)
T 3odt_A          124 KTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH--  197 (313)
T ss_dssp             SEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE--
T ss_pred             CCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe--
Confidence            9999999  667777777 899999999988 776666   489999999  4566666666 788899999999876  


Q ss_pred             EEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                       +++ ++.|+.|++||++.+. ...+..|...|.+++|+|++ .|++++.|+. |++||+.+++++..+..  |...|.+
T Consensus       198 -~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~--~~~~i~~  271 (313)
T 3odt_A          198 -FIS-CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITL--PAISIWS  271 (313)
T ss_dssp             -EEE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEEC--SSSCEEE
T ss_pred             -EEE-ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEec--cCceEEE
Confidence             333 3589999999999754 55677899999999999999 5889999999 99999999999999986  5679999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      ++|+|+++ +++++.||.|++||+++++...
T Consensus       272 ~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          272 VDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             EEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             EEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            99999998 5678999999999999987543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.3e-29  Score=226.63  Aligned_cols=266  Identities=12%  Similarity=0.124  Sum_probs=194.8

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC----ceeEEEe-cCCceeEEEEec--CceEEE---ecCeE
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRR--DRIIVV---LEQKI  196 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~----~~~~~~~-~~~~i~~~~~~~--~~~~~~---~d~~i  196 (403)
                      +|...|.++.|++++..+++++.|     |.|++||+.++    +.+..+. |...|.+++|+|  ++.+++   .|+.|
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ccccceeEEEEcCCCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            799999999999999999999999     99999999876    3556666 899999999999  577776   48999


Q ss_pred             EEEEcCCc---------eeeeEeeccCCCceeEEEeeC--CCeEEEEeeCCccCeEEEEEccCCce-eEE----------
Q 015650          197 FVYNFADL---------KLLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKRT-KFI----------  254 (403)
Q Consensus       197 ~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~----------  254 (403)
                      ++||++++         +.+..+..|...+..++|+++  ++  ++++ ++.|+.|++||++.... ..+          
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLAC-LGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEE-EETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEE-ecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999886         557778889999999999998  55  3443 34899999999987442 111          


Q ss_pred             ---eecCCceEEEEEcCC---CCEEEEEeCCCcEEEEEEcCCCcE--EEEEecCCCcccEEEEEeCCCC----CEEEEEe
Q 015650          255 ---MAHDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNA----QWLAVSS  322 (403)
Q Consensus       255 ---~~~~~~i~~~~~sp~---g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~----~~l~s~~  322 (403)
                         ..|...+.+++|+|+   +.+|++++.++. +.+|+...++.  +..+.  .|...|++++|+|++    ++|++++
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLP--GHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECC--CCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecC--CCCcceeEEEECCCCCCcceEEEEEc
Confidence               257788999999997   999999999999 98888877776  44444  377899999999998    8999999


Q ss_pred             CCCcEEEEEeecCCCCCCCCCCCCCCC-CCccccccccc------c---cccc-eeeeeeeeEEEEEeCCCceEEEeccC
Q 015650          323 DKGTVHVFNLKVNSGSARSEPRSTSDP-TLPTSSLSFIK------G---VLPK-YFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (403)
Q Consensus       323 ~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~---~~~~-~~~~~~~~~~~~~~~~~~~~~~fs~d  391 (403)
                      .||.|++||++++.............. ........+..      .   .... .......+..+..|.+.|++++|+|+
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence            999999999998754332221110000 00000000000      0   0000 00111223445667789999999999


Q ss_pred             CCEEEEEccCCC
Q 015650          392 KNTVVILGMDGR  403 (403)
Q Consensus       392 ~~~l~~~~~dG~  403 (403)
                      +++|++|+.||+
T Consensus       318 ~~~l~s~~~dg~  329 (351)
T 3f3f_A          318 GTILSSAGDDGK  329 (351)
T ss_dssp             SCCEEEEETTSC
T ss_pred             CCEEEEecCCCc
Confidence            999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=234.76  Aligned_cols=241  Identities=14%  Similarity=0.176  Sum_probs=192.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcC---CCeeEE--------EEeccc-CcceeEEEEe--eeCCeEEEeeC
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCD---PFREIF--------RRDFER-GGGIGVVEML--FRCNILALVGG  147 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~---~~~~~~--------~~~~~~-~~~~~v~~~~--~~~~~~~~~s~  147 (403)
                      .|...|++++|+|++++|++|+.+ .|++|+++   .++...        ...+.. ++...+.++.  +++++..++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            589999999999999999999855 59999984   332221        111110 0344555555  56788999999


Q ss_pred             CCCCCCCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEee-ccCCCceeE
Q 015650          148 GPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE-TIANPKGLC  220 (403)
Q Consensus       148 ~~d~~~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~  220 (403)
                      +.|     +.|++||+++++.+..+.   |...|.+++|+|++.+++   .|+.|++||+++++.+..+. .+...+..+
T Consensus       189 ~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          189 TNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV  263 (437)
T ss_dssp             ETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred             eCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence            999     999999999999998887   678999999999998888   48999999999999988876 566678888


Q ss_pred             EEeeC--CCeEEEEeeCCccCeEEEEEccCCce-eEEee--------------------------cCCceEEEEEcCCCC
Q 015650          221 AVSQG--VGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--------------------------HDSRIACFALTQDGQ  271 (403)
Q Consensus       221 ~~~~~--~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~--------------------------~~~~i~~~~~sp~g~  271 (403)
                      +++|.  .+..++++ |+.|+.|++||++++.. ..+.+                          |...|.+++|+ +++
T Consensus       264 ~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          264 EVCQFYGKNSVIVVG-GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EECTTTCTTEEEEEE-ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EeccccCCCccEEEE-EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            77764  44556665 55899999999987543 33332                          66678999999 789


Q ss_pred             EEEEEeCCCcEEEEEEcCCCcEEEEEecCC-----------------------------------CcccEEEEEeCCC--
Q 015650          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------------------------------DRAEIYSLAFSSN--  314 (403)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~l~~s~d--  314 (403)
                      +|++|+.|+. |++||+.+++.+..+..+.                                   |...|++++|+++  
T Consensus       342 ~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          342 ILLTDEATSS-IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEEGGGTE-EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             EEEecCCCCe-EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            9999999999 9999999998777776431                                   6789999999998  


Q ss_pred             CCEEEEEeCCCcEEEEE
Q 015650          315 AQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       315 ~~~l~s~~~dg~v~iwd  331 (403)
                      +.+|++|+.||.|+||+
T Consensus       421 ~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 TPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEcCCceEEEeC
Confidence            77999999999999995

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=3.3e-30  Score=235.02  Aligned_cols=258  Identities=12%  Similarity=0.013  Sum_probs=167.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEE---EecccCcceeEEEEeeeC--------CeEEEeeCCC
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR---RDFERGGGIGVVEMLFRC--------NILALVGGGP  149 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~---~~~~~~~~~~v~~~~~~~--------~~~~~~s~~~  149 (403)
                      ..|...+....+.+++.+|++++ |++|+||+++.++....   ..+. +|...|.+++|+|        ++..|++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            34555555666677888999998 55699999988765432   2344 8999999999987        7899999999


Q ss_pred             CCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (403)
                      |     ++|+|||+.++..+..+. |...+.+++|+|++. +++   .|++|++||+++++.......+........++.
T Consensus       165 D-----~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~  239 (393)
T 4gq1_A          165 D-----CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL  239 (393)
T ss_dssp             T-----SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred             C-----CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence            9     999999998887666655 999999999999874 455   489999999998876655543332222222221


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEc-CCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~s-p~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                      .....                   .......+|...+.++.|+ |+|+.|++++.|+. +++||+..++....+..  |.
T Consensus       240 ~~~~~-------------------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~--~~  297 (393)
T 4gq1_A          240 NTLPL-------------------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISD--ST  297 (393)
T ss_dssp             ESGGG-------------------C------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC---------------
T ss_pred             ccccc-------------------eeeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEee--ec
Confidence            11110                   1112234688889999987 79999999999999 99999988776665543  22


Q ss_pred             ccEEEEEe------------------CC--CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccc
Q 015650          304 AEIYSLAF------------------SS--NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (403)
Q Consensus       304 ~~v~~l~~------------------s~--d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (403)
                      ..+..+.+                  +|  ++.++++|+.||.|+|||+.+++.                          
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--------------------------  351 (393)
T 4gq1_A          298 MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--------------------------  351 (393)
T ss_dssp             ------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--------------------------
T ss_pred             CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--------------------------
Confidence            33333332                  22  344677888999999999998874                          


Q ss_pred             cceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                               ......+...|..|+|||||++||+++.||
T Consensus       352 ---------~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          352 ---------NSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             ---------CEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             ---------EEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence                     223456678999999999999999999887

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=4.9e-28  Score=220.63  Aligned_cols=253  Identities=15%  Similarity=0.124  Sum_probs=201.1

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (403)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~  175 (403)
                      .++++++ ++.|++||+.+++..  ..+.  +...+.++.|++++..+ ++++.+     +.|++||+.+++.+..+.+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~--~~~~--~~~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVT--ATIP--VGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAG   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEE--EEee--cCCCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECC
Confidence            3566776 555999999887765  4454  33458999999998654 666677     99999999999999999866


Q ss_pred             CceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650          176 SEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~  251 (403)
                      ..+.+++|+|++..++    .++.|++||+.+++.+..+..+ ..+..++|+++++.++++  +..++.|++||+.+++.
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVT--NNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEE--ETTTTEEEEEETTTTEE
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEE--eCCCCEEEEEECCCCcE
Confidence            7999999999998765    2689999999999888887654 456889999998866554  35789999999998766


Q ss_pred             eEEeecCCceEEEEEcCCCCEE-EEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe---CCCcE
Q 015650          252 KFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTV  327 (403)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~g~~l-~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~---~dg~v  327 (403)
                      .........+.+++|+|++++| ++++.++. |++||+++++.+..+.   +...+.+++|+|++++|++++   .++.|
T Consensus       151 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v  226 (391)
T 1l0q_A          151 INTVSVGRSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTV  226 (391)
T ss_dssp             EEEEECCSSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             EEEEecCCCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence            5554445667999999999988 56777888 9999999999888887   456899999999999999888   68999


Q ss_pred             EEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEE-EEEccCC
Q 015650          328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTV-VILGMDG  402 (403)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l-~~~~~dG  402 (403)
                      ++||+.+++.                                   +..+..+ ..+..++|+||+++| ++++.||
T Consensus       227 ~~~d~~~~~~-----------------------------------~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~  266 (391)
T 1l0q_A          227 SMIDTGTNKI-----------------------------------TARIPVG-PDPAGIAVTPDGKKVYVALSFXN  266 (391)
T ss_dssp             EEEETTTTEE-----------------------------------EEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred             EEEECCCCeE-----------------------------------EEEEecC-CCccEEEEccCCCEEEEEcCCCC
Confidence            9999988762                                   1223332 346789999999988 4556665

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.3e-28  Score=209.30  Aligned_cols=242  Identities=11%  Similarity=0.087  Sum_probs=167.6

Q ss_pred             CeEEEEEcCCCC---EEEEEcCCcEEEEEcCCC---eeEEEEecc----------------------cCcceeEEEEeee
Q 015650           87 TLLHISFNQDHG---CFAAGTDHGFRIYNCDPF---REIFRRDFE----------------------RGGGIGVVEMLFR  138 (403)
Q Consensus        87 ~i~~i~~s~d~~---~l~~~~~~~i~iw~~~~~---~~~~~~~~~----------------------~~~~~~v~~~~~~  138 (403)
                      .+.++-|-..|-   .++++++..|++|+....   +..+.-.+.                      .-+...+..++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            466777755443   678888999999999776   433222221                      1122356677777


Q ss_pred             CC----eEEEeeCCCCC---------------CCCCceEEEEEC-CCCceeEEEe-cCCceeEEEEec---CceEEE---
Q 015650          139 CN----ILALVGGGPDP---------------QYPLNKVMIWDD-HQSRCIGELS-FRSEVRSVKLRR---DRIIVV---  191 (403)
Q Consensus       139 ~~----~~~~~s~~~d~---------------~~~~~~i~iwd~-~~~~~~~~~~-~~~~i~~~~~~~---~~~~~~---  191 (403)
                      ++    +..+++++.+.               ...++.|++|++ .+|+.+..+. |...+..++|++   ++.+++   
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS  200 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT  200 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred             CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence            77    66666544200               001278888888 4477777666 777888888888   667777   


Q ss_pred             ecCeEEEEEcCCceeeeEeeccCC---CceeEEEeeCCCeEEE---------EeeCCccCeEEEEEccCCceeEE-----
Q 015650          192 LEQKIFVYNFADLKLLHQIETIAN---PKGLCAVSQGVGSLVL---------VCPGLQKGQVRVEHYASKRTKFI-----  254 (403)
Q Consensus       192 ~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~g~~d~~i~v~d~~~~~~~~~-----  254 (403)
                      .|++|+|||++++++++++.++..   .+..++|+|++..++.         +.+|+.|++|++||..+++....     
T Consensus       201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~  280 (356)
T 2w18_A          201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL  280 (356)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence            399999999999999999976443   4556789998764422         23477899999999998765432     


Q ss_pred             -eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc-EEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          255 -MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE-IYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       255 -~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                       .+|...+.+..+  ++.++++++.|++ |+|||+.+++++.++.+  |... +..++|+|||++|++|+.|++|+|||+
T Consensus       281 p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          281 PPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             255555544444  4889999999999 99999999999999986  4444 456899999999999999999999996


Q ss_pred             e
Q 015650          333 K  333 (403)
Q Consensus       333 ~  333 (403)
                      .
T Consensus       356 ~  356 (356)
T 2w18_A          356 S  356 (356)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=5.3e-30  Score=237.02  Aligned_cols=246  Identities=13%  Similarity=0.125  Sum_probs=186.5

Q ss_pred             cccCCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~-d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ..+.+|.+.|++|+|+| ++.+|++|+ |+.|+|||+++.......... .+...+.++.|++++..+++++.|     |
T Consensus       158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d-----g  231 (435)
T 4e54_B          158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV-----G  231 (435)
T ss_dssp             ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS-----S
T ss_pred             EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC-----C
Confidence            34678999999999998 688999998 555999999876543322222 345567889999999999999999     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeE---eeccCCCceeEEEeeCCCe
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQ---IETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  228 (403)
                      .|++||+. ++.+..+. |...|.+++|+|++. +++   .|+.|++||+++.+....   ...|...|..++|+|++..
T Consensus       232 ~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~  310 (435)
T 4e54_B          232 NVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR  310 (435)
T ss_dssp             BEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred             cEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence            99999986 45566666 899999999999875 444   489999999988665433   3567888999999998874


Q ss_pred             EEEEeeCCccCeEEEEEccCCc-eeEEeecCC------ceEEEEEcCCCCEEEEEeC------------CCcEEEEEEcC
Q 015650          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS------RIACFALTQDGQLLATSST------------KGTLVRIFNTL  289 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~------~i~~~~~sp~g~~l~s~~~------------dg~~i~iwd~~  289 (403)
                        +++ ++.|+.|++||++... ...+..|..      .+....|+|++.++++++.            ++. |++||..
T Consensus       311 --l~s-~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-i~iwd~~  386 (435)
T 4e54_B          311 --LLT-TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT-IDVFDGN  386 (435)
T ss_dssp             --EEE-EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC-EEEECSS
T ss_pred             --eEE-EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE-EEEEECC
Confidence              443 3489999999998854 334444432      2334567777777666542            356 9999999


Q ss_pred             CCcEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          290 DGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l-~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      +++.+..+..+ |...|.++ +|+|+|++|++|+ |+.|+||++++++.
T Consensus       387 ~g~~~~~l~~~-~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          387 SGKMMCQLYDP-ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             SCCEEEEECCS-SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             CCcEEEEEeCC-CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            99999888754 66788887 6999999999876 78999999998873

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=249.15  Aligned_cols=236  Identities=13%  Similarity=0.175  Sum_probs=196.4

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC--CCceeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEE
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFV  198 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~--~~~~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i  198 (403)
                      +|...|.++.|++++..+++++.|     |.|++||+.  +++.+..+. |...|.+++|+++  +.+++   .||.|++
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            799999999999999999999998     999999998  556677777 9999999999987  77777   4899999


Q ss_pred             EEcCCce--eeeEeeccCCCceeEEEeeC--CCeEEEEeeCCccCeEEEEEccCC---ceeEEeecCCceEEEEEcC---
Q 015650          199 YNFADLK--LLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQ---  268 (403)
Q Consensus       199 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~v~d~~~~---~~~~~~~~~~~i~~~~~sp---  268 (403)
                      ||+.+++  .+..+..|...+..++|+|+  ++  ++++ |+.||.|++||++..   ....+..|...|.+++|+|   
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~--~l~s-gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP--LLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS--EEEE-EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCC--EEEE-EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            9999886  67777889999999999998  55  3443 348999999999885   3456778999999999999   


Q ss_pred             ----------CCCEEEEEeCCCcEEEEEEcCCC----cEEEEEecCCCcccEEEEEeCCC---CCEEEEEeCCCcEEEEE
Q 015650          269 ----------DGQLLATSSTKGTLVRIFNTLDG----TLLQEVRRGADRAEIYSLAFSSN---AQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       269 ----------~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~~~~~~~v~~l~~s~d---~~~l~s~~~dg~v~iwd  331 (403)
                                ++.+|++|+.||. |++||++++    ..+..+..  |...|++++|+|+   +++|++++.||.|++||
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             --------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                      5899999999999 999999877    44455554  7789999999999   89999999999999999


Q ss_pred             eecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      +.+++......                              ......+.+.+++++|+|+|++|++|+.||+
T Consensus       236 ~~~~~~~~~~~------------------------------~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~  277 (753)
T 3jro_A          236 QDNEQGPWKKT------------------------------LLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (753)
T ss_dssp             ESSSSSCCBCC------------------------------BSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred             CCCCCCcceeE------------------------------EeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence            99876311110                              0001234567899999999999999999984

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4e-31  Score=242.61  Aligned_cols=222  Identities=8%  Similarity=-0.008  Sum_probs=177.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      .+|...|.+++|+|+|      .++.+.+|+   .+......+  .+...|.+++|+|++..+++++.+     |.|++|
T Consensus        49 ~gh~~~v~~V~FsPdg------~~~~~~~~~---~~~~~~~~~--~~~~~V~~vawSPdG~~LAs~s~d-----g~V~iw  112 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLE------FENKLDFEL---AQQNGLLNS--QPVCYPRVCKPSPIDDWMAVLSNN-----GNVSVF  112 (588)
T ss_dssp             SSBGGGTEEEEEECCC------CCCTTTTSC---CCSSCSSTT--SCSCCEEEEEECSSSSCEEEEETT-----SCEEEE
T ss_pred             cCCCccEEEEEECCCC------CcceEEEEe---CCCceEeec--CCCCcEEEEEECCCCCEEEEEeCC-----CcEEEE
Confidence            6899999999999999      344455554   332211333  357889999999999999999999     999999


Q ss_pred             ECCCCceeEEEecCC-----ceeEEEEecCceEEE---ecCeEEEEEcCCcee-------eeEe----eccCCCceeEEE
Q 015650          162 DDHQSRCIGELSFRS-----EVRSVKLRRDRIIVV---LEQKIFVYNFADLKL-------LHQI----ETIANPKGLCAV  222 (403)
Q Consensus       162 d~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~-------~~~~----~~~~~~~~~~~~  222 (403)
                      |...  ++..+.|..     .+.+++|+|||++++   .||+|++||+.+++.       +.++    .+|...|..++|
T Consensus       113 d~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVaw  190 (588)
T 2j04_A          113 KDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVW  190 (588)
T ss_dssp             ETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEE
T ss_pred             eCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEE
Confidence            9544  555555443     499999999999999   399999999988753       5666    556679999999


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccCCce----eEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~~~----~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      +|++   ++++  +.|+.|++||+.++..    ..+ .+|...|.+++|+  |.+||+++ +++ |++||+.+++.....
T Consensus       191 SPdg---Laas--s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~~~~~~~  261 (588)
T 2j04_A          191 YEDV---LVAA--LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNYSISSLK  261 (588)
T ss_dssp             ETTE---EEEE--ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTTEEEEEE
T ss_pred             cCCc---EEEE--eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCCeEEEEE
Confidence            9987   3332  3699999999988664    345 4788999999999  68999887 588 999999887774333


Q ss_pred             ecCCCcccEEEEEe--CCCCCEEEEEeCCCcEEEEEee
Q 015650          298 RRGADRAEIYSLAF--SSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       298 ~~~~~~~~v~~l~~--s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      .+  |...|.+++|  +||++.|+++++||+ ++|.++
T Consensus       262 ~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          262 TG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             cC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            33  7899999999  999999999999999 999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=3.6e-29  Score=232.23  Aligned_cols=240  Identities=11%  Similarity=0.162  Sum_probs=182.1

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-----------eeEEEe-cC------------CceeEEEE
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----------CIGELS-FR------------SEVRSVKL  183 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-----------~~~~~~-~~------------~~i~~~~~  183 (403)
                      +...|.++.|++++.+|++++.|     |.|+|||+.+++           .+..+. |.            ..|.+++|
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKG-----GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETT-----SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCC-----CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence            67899999999999999999999     999999998876           466676 76            88999999


Q ss_pred             ecCc--eEEE---ecCeEEEEEcCCceee---------------------------------------eE-eeccCCCce
Q 015650          184 RRDR--IIVV---LEQKIFVYNFADLKLL---------------------------------------HQ-IETIANPKG  218 (403)
Q Consensus       184 ~~~~--~~~~---~d~~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~~~  218 (403)
                      +|++  ..++   .|++|++||+.+++..                                       .. ...|...+.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            9997  4444   5999999999764432                                       12 356888999


Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeE--------EeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEEEc
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKF--------IMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNT  288 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~--------~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~  288 (403)
                      .++|+++++  ++++ | .|+.|++||++. .....        +..|...|.+++|+|++ ++|++|+.|+. |++||+
T Consensus       182 ~~~~~~~~~--~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~  256 (447)
T 3dw8_B          182 SISINSDYE--TYLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDM  256 (447)
T ss_dssp             EEEECTTSS--EEEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEET
T ss_pred             EEEEcCCCC--EEEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEEC
Confidence            999999877  4444 4 699999999984 33222        44789999999999998 99999999999 999999


Q ss_pred             CCCcE----EEEEecCCCcc------------cEEEEEeCCCCCEEEEEeCCCcEEEEEeec-CCCCCCCCCCCCCCCCC
Q 015650          289 LDGTL----LQEVRRGADRA------------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTL  351 (403)
Q Consensus       289 ~~~~~----~~~~~~~~~~~------------~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~  351 (403)
                      ++++.    +..+..  |..            .|.+++|+|+|++|++++. +.|++||+++ ++....+..+.....  
T Consensus       257 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~--  331 (447)
T 3dw8_B          257 RASALCDRHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS--  331 (447)
T ss_dssp             TTCSSSCTTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT--
T ss_pred             cCCccccceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc--
Confidence            99886    677775  333            8999999999999999998 9999999987 554332221100000  


Q ss_pred             cccccccccccccceeeeeeeeEEEEEeCC---CceEEEeccCCCEEEEEccCCC
Q 015650          352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVEG---SPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                .+...+           ...   .+..++|+|++++|++|+.||+
T Consensus       332 ----------~l~~~~-----------~~~~i~~~~~~~~s~~~~~l~s~s~dg~  365 (447)
T 3dw8_B          332 ----------KLCSLY-----------ENDCIFDKFECCWNGSDSVVMTGSYNNF  365 (447)
T ss_dssp             ----------THHHHH-----------HTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred             ----------cccccc-----------cccccccceEEEECCCCCEEEEeccCCE
Confidence                      000000           001   1234899999999999999984

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.5e-28  Score=227.26  Aligned_cols=235  Identities=14%  Similarity=0.300  Sum_probs=190.7

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|...|.+++|  ++++|++|+.+ .|++||+.+++..  ..+. +|...+.++.|+++  .+++++.|     
T Consensus       165 ~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~l~~~~~--~l~s~s~d-----  232 (435)
T 1p22_A          165 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML--NTLI-HHCEAVLHLRFNNG--MMVTCSKD-----  232 (435)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE--EEEC-CCCSCEEEEECCTT--EEEEEETT-----
T ss_pred             EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE--EEEc-CCCCcEEEEEEcCC--EEEEeeCC-----
Confidence            34567789999999999  78899999855 5999999888765  5565 68889999999866  66777777     


Q ss_pred             ceEEEEECCCCcee---EEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          156 NKVMIWDDHQSRCI---GELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       156 ~~i~iwd~~~~~~~---~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      |.|++||+.+++.+   ..+. |...|.+++|  ++.+++   .|+.|++||+++++.+..+..|...+..+.+.  ++ 
T Consensus       233 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~-  307 (435)
T 1p22_A          233 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DR-  307 (435)
T ss_dssp             SCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TT-
T ss_pred             CcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CC-
Confidence            99999999988765   3444 8899999999  444444   48999999999999999999998888877774  33 


Q ss_pred             EEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc---------EEEEEe
Q 015650          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT---------LLQEVR  298 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~---------~~~~~~  298 (403)
                       ++++ |+.|+.|++||++++. +..+.+|...|.+++|  ++.+|++|+.||. |++||+.+++         ++..+.
T Consensus       308 -~l~~-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~  382 (435)
T 1p22_A          308 -LVVS-GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLV  382 (435)
T ss_dssp             -EEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             -EEEE-EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCccccccchheeecc
Confidence             3443 4589999999999754 5667889999999999  7899999999999 9999997766         777777


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       299 ~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .  |...|.+++|  ++++|++++.||.|++||+.+...
T Consensus       383 ~--h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          383 E--HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             C--CSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred             C--CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence            5  7789999999  788999999999999999998764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2e-28  Score=220.87  Aligned_cols=245  Identities=13%  Similarity=0.148  Sum_probs=199.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEee--eCCeEEEeeCCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPL  155 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~~~~  155 (403)
                      ..+.+|...|++++|+|++++|++++.++ |++|++.+.+..  ...  .|...+.++.|  ++++..+++++.|     
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d-----  150 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI--QIA--QHDAPVKTIHWIKAPNYSCVMTGSWD-----  150 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEE--ECSSCEEEEEEEECSSCEEEEEEETT-----
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce--eec--cccCceEEEEEEeCCCCCEEEEccCC-----
Confidence            56778999999999999999999998554 999999887755  333  48889999999  8999999999998     


Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEe--eccCCCceeEEEeeCCCe--EE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGS--LV  230 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~  230 (403)
                      +.|++||+.+++.+..+.....+.++.+.++..+++ .++.+++|+++........  .........+++.++...  ..
T Consensus       151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (368)
T 3mmy_A          151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG  230 (368)
T ss_dssp             SEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred             CcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe
Confidence            999999999999999999777888888888766665 6899999999875433222  223345566676665542  22


Q ss_pred             EEeeCCccCeEEEEEccCC----ceeEEeecCC------------ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEE
Q 015650          231 LVCPGLQKGQVRVEHYASK----RTKFIMAHDS------------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~------------~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (403)
                      +++ ++.|+.|++||++..    ....+..|..            .|.+++|+|++++|++++.||. |++||+.+++++
T Consensus       231 ~~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~  308 (368)
T 3mmy_A          231 FAL-GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKL  308 (368)
T ss_dssp             EEE-EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEE
T ss_pred             EEE-ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEE
Confidence            333 458999999999884    3455666665            7999999999999999999999 999999999999


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       295 ~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ..+..  |...|++++|+|+|++|++++.|+..+.|++...+
T Consensus       309 ~~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          309 KTSEQ--LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             EECCC--CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred             EEecC--CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence            88885  67899999999999999999999877766665544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.9e-28  Score=219.09  Aligned_cols=234  Identities=11%  Similarity=0.053  Sum_probs=186.5

Q ss_pred             cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc----eeEEEecCCceeEEEEecCce-EEE---ecCeEE
Q 015650          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELSFRSEVRSVKLRRDRI-IVV---LEQKIF  197 (403)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~---~d~~i~  197 (403)
                      .+|...|.++.|++++..+++++.|     +.|++|++.+++    ......|...|.+++|+|++. +++   .|+.|+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCC-----CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            3788999999999999999999888     999999998887    444445999999999999998 776   489999


Q ss_pred             EEEc-CCceeeeEeec--cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC---------CceeEEeecCCceEEEE
Q 015650          198 VYNF-ADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFA  265 (403)
Q Consensus       198 i~d~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~---------~~~~~~~~~~~~i~~~~  265 (403)
                      +||+ .+++. ..+..  |...+..++|++ ++.  +++ ++.|+.|++||++.         ........|...|.+++
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~--l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  157 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDK--LIA-ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTE--EEE-EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCC-CCE--EEE-EcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence            9999 77654 66777  889999999999 553  333 34899999999886         44333334889999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEEcCC-CcEEEEEecCCCcccEEEEEeCC-CCCEEEEEeCCCcEEEEEeecCC--CCCCC
Q 015650          266 LTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNS--GSARS  341 (403)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~~dg~v~iwd~~~~~--~~~~~  341 (403)
                      |+|++  |++++.|+. |++||+++ +..........+...|.+++|+| ++++|++++.||.|++|+++...  .... 
T Consensus       158 ~~~~~--l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-  233 (342)
T 1yfq_A          158 TNSSR--LIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS-  233 (342)
T ss_dssp             ECSSE--EEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT-
T ss_pred             ecCCc--EEEEeCCCe-EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc-
Confidence            99987  889999999 99999988 55422222223678999999999 99999999999999999998871  1000 


Q ss_pred             CCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC---------CCceEEEeccCCCEEEEEccCCC
Q 015650          342 EPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE---------GSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                                    ....++.+.         ..+.+++|+|++++|++++.||+
T Consensus       234 ------------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  274 (342)
T 1yfq_A          234 ------------------------------KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             ------------------------------TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             ------------------------------cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence                                          011233333         38999999999999999999984

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=4.2e-27  Score=214.43  Aligned_cols=241  Identities=12%  Similarity=0.087  Sum_probs=197.8

Q ss_pred             CCeEEEEEcCCCCEE-EEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEE
Q 015650           86 PTLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l-~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd  162 (403)
                      ..+.+++|+|+|++| ++++ ++.|++||+.+++..  ..+.  +...+..++|++++..+ +++..+     +.|++||
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--~~~~--~~~~v~~~~~spdg~~l~~~~~~~-----~~v~v~d  102 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--ATVP--AGSSPQGVAVSPDGKQVYVTNMAS-----STLSVID  102 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--EEEE--CCCCccceEECCCCCEEEEEECCC-----CEEEEEE
Confidence            458999999999977 5554 566999999887765  4444  22388999999987755 566666     8999999


Q ss_pred             CCCCceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCcc
Q 015650          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (403)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (403)
                      +.+++.+..+.+...+.+++|+|++..++    .++.|++||+++++.+..+..+. .+..++++++++.++++  +..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~--~~~~  179 (391)
T 1l0q_A          103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVA--NFDS  179 (391)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEE--ETTT
T ss_pred             CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEE--eCCC
Confidence            99999998888777899999999998663    38899999999999888887654 45888999998865544  3578


Q ss_pred             CeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEe---CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (403)
Q Consensus       239 ~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~---~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~  315 (403)
                      +.|++||++++.......+...+.+++|+|+|++|++++   .++. |++||+.+++.+..+..+   ..+.+++|+|++
T Consensus       180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg  255 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPVG---PDPAGIAVTPDG  255 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEECC---SSEEEEEECTTS
T ss_pred             CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEecC---CCccEEEEccCC
Confidence            999999999987766666778899999999999999888   6888 999999999998888853   468999999999


Q ss_pred             CEE-EEEeCCCcEEEEEeecCCCCCCCC
Q 015650          316 QWL-AVSSDKGTVHVFNLKVNSGSARSE  342 (403)
Q Consensus       316 ~~l-~s~~~dg~v~iwd~~~~~~~~~~~  342 (403)
                      ++| ++++.|+.|++||+.+++....+.
T Consensus       256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          256 KKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            987 566889999999999877654443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=1.8e-27  Score=217.75  Aligned_cols=245  Identities=11%  Similarity=0.121  Sum_probs=186.7

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC---CeEEEeeCCCCCCCCCc
Q 015650           82 SSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLN  156 (403)
Q Consensus        82 ~~~~~~i~~i~~s~-d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~~~d~~~~~~  156 (403)
                      .+|...|.+++|+| ++.+|++++ ++.|++|++.+.+...  .+.  +...+..+.+.+   ++..+++++.+     +
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  166 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD--VFN--FEETVYSHHMSPVSTKHCLVAVGTRG-----P  166 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE--EEE--CSSCEEEEEECSSCSSCCEEEEEESS-----S
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce--ecc--CCCceeeeEeecCCCCCcEEEEEcCC-----C
Confidence            46999999999999 778888888 5559999999887663  343  455677777766   45578888888     9


Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCce-eeeEe---------------eccCC
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLK-LLHQI---------------ETIAN  215 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~-~~~~~---------------~~~~~  215 (403)
                      .|++||+.+++.+..+. |...|.+++|+|++. +++   .|+.|++||++++. .+..+               ..|..
T Consensus       167 ~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
T 4a11_B          167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG  246 (408)
T ss_dssp             SEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred             eEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence            99999999999999888 999999999999987 344   48999999998764 33333               45777


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE-ee-----cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~-~~-----~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      .+..++|+|+++.+  ++ ++.|+.|++||++++..... ..     ....+........+..+++++.++. |++||+.
T Consensus       247 ~v~~~~~~~~~~~l--~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~d~~  322 (408)
T 4a11_B          247 KVNGLCFTSDGLHL--LT-VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST-IAVYTVY  322 (408)
T ss_dssp             CEEEEEECTTSSEE--EE-EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE-EEEEETT
T ss_pred             ceeEEEEcCCCCEE--EE-ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE-EEEEECc
Confidence            88999999987743  33 34799999999988553221 11     1112222222334556677788898 9999999


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~  341 (403)
                      +++.+..+..  |...|++++|+|++++|++++.||.|++||+++++.....
T Consensus       323 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          323 SGEQITMLKG--HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             TCCEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred             CCcceeeecc--CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence            9999999986  6789999999999999999999999999999998865443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=8.8e-27  Score=215.27  Aligned_cols=240  Identities=13%  Similarity=0.115  Sum_probs=198.9

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCce
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNK  157 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~  157 (403)
                      .+.+|...|.+++|+++++++++++. +.|++|++++.+..  ..+. .+...+..+.|++++..+ +++..+     +.
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-----~~  235 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK--ATVD-LTGKWSKILLYDPIRDLVYCSNWIS-----ED  235 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE--EEEE-CSSSSEEEEEEETTTTEEEEEETTT-----TE
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE--EEEc-CCCCCeeEEEEcCCCCEEEEEecCC-----Cc
Confidence            34578899999999999999999984 55999999887665  4444 577789999999987655 566567     99


Q ss_pred             EEEEECCCCceeEEEecCCceeEEEEecCceEEE--e---------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC
Q 015650          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (403)
                      |++||+.+++.+..+.....+.+++|+|++.+++  .         |+.|++||+++++.+..+. +...+..+++++++
T Consensus       236 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g  314 (433)
T 3bws_A          236 ISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTE  314 (433)
T ss_dssp             EEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSST
T ss_pred             EEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCC
Confidence            9999999999888888767799999999997666  2         5699999999988777663 34467789999998


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC---------------CCcEEEEEEcCCC
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---------------KGTLVRIFNTLDG  291 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~---------------dg~~i~iwd~~~~  291 (403)
                      +.++++.  ..++.|++||+.+++......+...+.+++|+|+|++|++++.               ||. |++||+.++
T Consensus       315 ~~l~~~~--~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~  391 (433)
T 3bws_A          315 NKIYVSD--MCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTD  391 (433)
T ss_dssp             TEEEEEE--TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTT
T ss_pred             CEEEEEe--cCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCC
Confidence            8665543  5789999999998776665568888999999999999988876               468 999999999


Q ss_pred             cEEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCcEEEEEeec
Q 015650          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKV  334 (403)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~-dg~v~iwd~~~  334 (403)
                      +.+..+..   ...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       392 ~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          392 TVKEFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cEEEEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            99988874   357999999999999988874 99999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-26  Score=214.38  Aligned_cols=242  Identities=9%  Similarity=0.041  Sum_probs=189.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEE-EEEc-CCcEEEEEcC--CCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           81 SSSPPPTLLHISFNQDHGCF-AAGT-DHGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l-~~~~-~~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ..+|.+.|++++|+|++++| ++|+ |+.|+||++.  +++........ .+...+.++.|++++..+++++.+     |
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~-----g  171 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-CFSKRPNAISIAEDDTTVIIADKF-----G  171 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-cCCCCceEEEEcCCCCEEEEEeCC-----C
Confidence            45688899999999999996 7887 5559999998  65554222211 366789999999999999999888     9


Q ss_pred             eEEEEECCCCceeE----EEe-cCCceeEEEEecC---ceEEE---ecCeEEEEEcCCceeeeE-eeccCCCceeEEEee
Q 015650          157 KVMIWDDHQSRCIG----ELS-FRSEVRSVKLRRD---RIIVV---LEQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQ  224 (403)
Q Consensus       157 ~i~iwd~~~~~~~~----~~~-~~~~i~~~~~~~~---~~~~~---~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~  224 (403)
                      .|++|++.+++...    .+. |...|.+++|+|+   +.+++   .|++|++||+++++.+.. +.+|...+..++|+ 
T Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-  250 (450)
T 2vdu_B          172 DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-  250 (450)
T ss_dssp             EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-
T ss_pred             cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-
Confidence            99999998887553    555 8899999999999   88777   489999999999888877 55788999999999 


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccCCce-eEEee-------------------------cCCceEEEEEcCCCCEEEEEe-
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA-------------------------HDSRIACFALTQDGQLLATSS-  277 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~-------------------------~~~~i~~~~~sp~g~~l~s~~-  277 (403)
                      +++.  +++ ++.|+.|++||+++++. ..+..                         ....|.+++|+|++++|++++ 
T Consensus       251 d~~~--l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~  327 (450)
T 2vdu_B          251 KDYL--LLS-AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE  327 (450)
T ss_dssp             STTE--EEE-EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCE--EEE-EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence            7663  343 34899999999998654 33432                         235689999999999999998 


Q ss_pred             CCCcEEEEEEc--CCC---cEEEEEecCCCcccEEEEEeCCCCCEEEEEeC------CCcEEEEEeecCC
Q 015650          278 TKGTLVRIFNT--LDG---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKVNS  336 (403)
Q Consensus       278 ~dg~~i~iwd~--~~~---~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~------dg~v~iwd~~~~~  336 (403)
                      .++. |+||++  .++   +.+..+..  + ..|.+++|+|++.++++++.      +..|.+|.++...
T Consensus       328 ~d~~-i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~  393 (450)
T 2vdu_B          328 ATKC-IIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNE  393 (450)
T ss_dssp             TCSE-EEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred             CCCe-EEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence            7888 999999  555   66667774  3 78999999996444444332      5568999987654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=7.2e-27  Score=209.95  Aligned_cols=234  Identities=13%  Similarity=0.113  Sum_probs=170.6

Q ss_pred             EEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceE
Q 015650          110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII  189 (403)
Q Consensus       110 iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (403)
                      ||.+.+...+  ..+. .|...|.+++|++++..+++++.+      .+++|++.+++.+....+. .+..+.+.+++..
T Consensus         3 i~s~~~~~~~--~~~~-~h~~~V~~v~fs~dg~~la~g~~~------~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~   72 (355)
T 3vu4_A            3 LGSMITRNPI--VPEN-HVSNPVTDYEFNQDQSCLILSTLK------SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNY   72 (355)
T ss_dssp             -------------------CCCCCEEEECTTSSEEEEECSS------EEEEEEETTEEEEEEEECS-CCCEEEECTTSSE
T ss_pred             cccccccCCc--cccc-cCCCceEEEEECCCCCEEEEEcCC------EEEEEecCCcceeeeeecC-CeEEEEEcCCCCE
Confidence            4555444333  3333 688999999999999999998875      4789999888766655433 5778888887766


Q ss_pred             EE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ceeEEeecCCceEE
Q 015650          190 VV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIAC  263 (403)
Q Consensus       190 ~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~~i~~  263 (403)
                      ++    .|++|++||+.+++.+..+. +...+..+.++++  .++++    .++.|++||+.+.  .+..+..   ....
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~----~~~~i~i~d~~~~~~~~~~~~~---~~~~  142 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS----YGDVISVFKFGNPWKRITDDIR---FGGV  142 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE----ETTEEEEEESSTTCCBSSCCEE---EEEE
T ss_pred             EEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE----EcCEEEEEECCCCceeeEEecc---CCce
Confidence            54    36799999999999988886 4556777777654  33332    4789999999876  3333333   4455


Q ss_pred             EEEcCCCCEEEE--EeCCCcEEEEEEcCCCc----------------EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          264 FALTQDGQLLAT--SSTKGTLVRIFNTLDGT----------------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       264 ~~~sp~g~~l~s--~~~dg~~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      +++++  .++++  |+.||. |++||+.+++                ++..+.+  |...|++++|+|+|++|++++.||
T Consensus       143 ~~~s~--~~la~~sg~~~g~-v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~--h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          143 CEFSN--GLLVYSNEFNLGQ-IHITKLQSSGSATTQDQGVQQKAILGKGVLIKA--HTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EEEET--TEEEEEESSCTTC-EEEEECCC------------------CCEEECC--CSSCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEEc--cEEEEeCCCcCcE-EEEEECCCCCccccccccccccccCcccEEEEc--cCCceEEEEECCCCCEEEEEeCCC
Confidence            66777  56666  578999 9999998865                1456664  788999999999999999999999


Q ss_pred             c-EEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEE-E-eCCCceEEEeccCCCEEEEEccCC
Q 015650          326 T-VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR-L-VEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       326 ~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      + |++||+++++.                                   +..++ + |.+.|.+++|+|||++|++++.||
T Consensus       218 ~~v~iwd~~~~~~-----------------------------------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          218 TIIRVFKTEDGVL-----------------------------------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             SEEEEEETTTCCE-----------------------------------EEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             CEEEEEECCCCcE-----------------------------------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence            8 99999998873                                   33355 3 778999999999999999999998


Q ss_pred             C
Q 015650          403 R  403 (403)
Q Consensus       403 ~  403 (403)
                      +
T Consensus       263 ~  263 (355)
T 3vu4_A          263 T  263 (355)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=5.4e-26  Score=196.26  Aligned_cols=228  Identities=12%  Similarity=0.136  Sum_probs=158.0

Q ss_pred             eEEEEeeeC---CeEEEeeCCCCCCCCCceEEEEECCCC---ceeEEEe-cCC-------------------------ce
Q 015650          131 GVVEMLFRC---NILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRS-------------------------EV  178 (403)
Q Consensus       131 ~v~~~~~~~---~~~~~~s~~~d~~~~~~~i~iwd~~~~---~~~~~~~-~~~-------------------------~i  178 (403)
                      .+..+.|..   ....+++++.      ..|++|+..++   +++.++. |+.                         .|
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~------~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v  114 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE------DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREI  114 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES------SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEE
T ss_pred             EEeeeeeccCCCCccEEEEecc------ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccce
Confidence            344444433   3346777776      69999999888   6666666 443                         35


Q ss_pred             eEEEEecC----ceEEEe-----------------------cCeEEEEEc-CCceeeeEeeccCCCceeEEEee-CCCeE
Q 015650          179 RSVKLRRD----RIIVVL-----------------------EQKIFVYNF-ADLKLLHQIETIANPKGLCAVSQ-GVGSL  229 (403)
Q Consensus       179 ~~~~~~~~----~~~~~~-----------------------d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  229 (403)
                      ..++++||    +..++.                       |+.|++|++ .+++.+..+..|...+..++|++ ++++.
T Consensus       115 ~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~  194 (356)
T 2w18_A          115 RALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE  194 (356)
T ss_dssp             EEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred             EEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence            56666667    555441                       566777777 34666666777777777888887 44444


Q ss_pred             EEEeeCCccCeEEEEEccCCc-eeEEeecC---CceEEEEEcCCCCEE------------EEEeCCCcEEEEEEcCCCcE
Q 015650          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHD---SRIACFALTQDGQLL------------ATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~---~~i~~~~~sp~g~~l------------~s~~~dg~~i~iwd~~~~~~  293 (403)
                      ++++ |+.|++|+|||+++++ +..+.+|.   ..+.+++|+|+|.++            ++|+.|++ |++||..+++.
T Consensus       195 ~LaS-gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~  272 (356)
T 2w18_A          195 ALLG-TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLS  272 (356)
T ss_dssp             EEEE-EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTTEE
T ss_pred             eEEE-ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEE
Confidence            5665 4589999999999865 56676554   367788999999987            56778899 99999999998


Q ss_pred             EEEEe---cCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeee
Q 015650          294 LQEVR---RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSE  370 (403)
Q Consensus       294 ~~~~~---~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (403)
                      +..+.   ...|...+.+..++  +.++++++.|++|+|||+.+++.                                 
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~---------------------------------  317 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQC---------------------------------  317 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSE---------------------------------
T ss_pred             EEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcE---------------------------------
Confidence            87653   11244445555543  78999999999999999999884                                 


Q ss_pred             eeeEEEEEeCCCce-EEEeccCCCEEEEEccCCC
Q 015650          371 WSVAQFRLVEGSPY-IVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       371 ~~~~~~~~~~~~~~-~~~fs~d~~~l~~~~~dG~  403 (403)
                        +..++.|.+.+. .++|||||++|++|+.||+
T Consensus       318 --l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          318 --TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             --EEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             --EEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence              334555655544 5899999999999999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.9e-27  Score=210.18  Aligned_cols=221  Identities=15%  Similarity=0.196  Sum_probs=168.4

Q ss_pred             eeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcC---------Cc
Q 015650          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFA---------DL  204 (403)
Q Consensus       136 ~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~---------~~  204 (403)
                      .+..++..+++++.|     |.|++||+.+++.+..+. ...|.++.++|+  ++.  .|++|++|+..         ++
T Consensus        43 ~~~~d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCED-----GALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEET-----TEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCC-----CcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCc
Confidence            344578889999999     999999999999888876 456777778887  333  47788888654         55


Q ss_pred             eeeeEee-ccCCCceeEEEee--CCCeEEEEeeCCccCeEEEEEccCCceeEEe--ecCCceEEEEEcCCCCEEEEEeCC
Q 015650          205 KLLHQIE-TIANPKGLCAVSQ--GVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSSTK  279 (403)
Q Consensus       205 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~s~~~d  279 (403)
                      +.++.+. .|...+..++++|  +++  ++++ ++.|+.|++||++++......  .|...+.+++|+|+|.+|++|+.|
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTE--YFIW-ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CC--EEEE-EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCC--EEEE-EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            5455443 4557788999999  665  4444 348999999999987764433  455689999999999999999999


Q ss_pred             CcEEEEEEcCCCcEE-EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccc
Q 015650          280 GTLVRIFNTLDGTLL-QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (403)
Q Consensus       280 g~~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (403)
                      |. |+|||+++++.+ ..+.. .|...|++++|+|++.+|++++ |+.|++||+++.+....+...              
T Consensus       192 g~-i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~--------------  254 (343)
T 3lrv_A          192 GI-LDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY--------------  254 (343)
T ss_dssp             SC-EEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC--------------
T ss_pred             CE-EEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc--------------
Confidence            99 999999999887 67765 2678999999999999999999 459999999998754333200              


Q ss_pred             ccccccceeeeeeeeEEEEEeCCCc--eEEEeccCCCEEEEEcc-CC
Q 015650          359 IKGVLPKYFSSEWSVAQFRLVEGSP--YIVAFGHQKNTVVILGM-DG  402 (403)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fs~d~~~l~~~~~-dG  402 (403)
                                        ..+...+  .+++|+|+|++|++++. |+
T Consensus       255 ------------------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~  283 (343)
T 3lrv_A          255 ------------------TIPEFKTGTVTYDIDDSGKNMIAYSNESN  283 (343)
T ss_dssp             ------------------BC-----CCEEEEECTTSSEEEEEETTTT
T ss_pred             ------------------ccccccccceEEEECCCCCEEEEecCCCC
Confidence                              0011111  46999999999999887 65

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.1e-26  Score=212.99  Aligned_cols=272  Identities=13%  Similarity=0.057  Sum_probs=198.3

Q ss_pred             CCeEEEEEcCCCC-EEEEEc-----CC----cEEEEEc--CCCeeEEEEecccCcceeEEEEeee---------------
Q 015650           86 PTLLHISFNQDHG-CFAAGT-----DH----GFRIYNC--DPFREIFRRDFERGGGIGVVEMLFR---------------  138 (403)
Q Consensus        86 ~~i~~i~~s~d~~-~l~~~~-----~~----~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~---------------  138 (403)
                      ..+....|.+.|. ++++|+     ++    .|+|||+  .+++.+....+. +|...+..+++.               
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            3567778888874 555664     34    4999999  888766555565 555555555544               


Q ss_pred             -CCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ec---CeEEEEEcCCceeeeEe
Q 015650          139 -CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LE---QKIFVYNFADLKLLHQI  210 (403)
Q Consensus       139 -~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d---~~i~i~d~~~~~~~~~~  210 (403)
                       ....++++.... .-..+.|++||+..+. ...+. |...+.+++|+|||..++   .+   ..|++||+++++.. .+
T Consensus       142 ~~~~l~~~s~~~~-~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l  218 (415)
T 2hqs_A          142 FRTRIAYVVQTNG-GQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV  218 (415)
T ss_dssp             TTCEEEEEEECSS-SSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred             CCCEEEEEEecCC-CCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence             223333333211 0001589999987544 45555 889999999999998887   24   39999999988765 45


Q ss_pred             eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-C--cEEEEEE
Q 015650          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFN  287 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g--~~i~iwd  287 (403)
                      ..+...+..++|+|+++.++++.....+..|++||+.+++...+..|...+.+++|+|||++|++++.+ +  . |++||
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~-i~~~d  297 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ-VYKVN  297 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE-EEEEE
T ss_pred             ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE-EEEEE
Confidence            566778889999999987665543323456999999998888888899999999999999999988764 4  5 78889


Q ss_pred             cCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccc
Q 015650          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (403)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (403)
                      +.+++.. .+..  +...+.+++|+|||++|++++.+   ..|++||+.+++.                           
T Consensus       298 ~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------------------------  347 (415)
T 2hqs_A          298 INGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------------------  347 (415)
T ss_dssp             TTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------------------
T ss_pred             CCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------------------
Confidence            9887753 3332  45678999999999999988754   5899999988762                           


Q ss_pred             ceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                               ..+..+ ..+..++|+|||++|++++.|+
T Consensus       348 ---------~~l~~~-~~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          348 ---------QVLSST-FLDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             ---------EECCCS-SSCEEEEECTTSSEEEEEEEET
T ss_pred             ---------EEecCC-CCcCCeEEcCCCCEEEEEEcCC
Confidence                     111122 2677899999999999988765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=9.5e-26  Score=206.80  Aligned_cols=263  Identities=11%  Similarity=0.038  Sum_probs=196.8

Q ss_pred             cCCCCCCeEEEEEcC--------------CCCEEEEEc-C------CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC
Q 015650           81 SSSPPPTLLHISFNQ--------------DHGCFAAGT-D------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC  139 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~--------------d~~~l~~~~-~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~  139 (403)
                      +.+|...+..+++++              .+..++.++ +      +.|++||++....   +.+. +|...+.++.|+|
T Consensus       113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~---~~l~-~~~~~v~~~~~Sp  188 (415)
T 2hqs_A          113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ---FVVH-RSPQPLMSPAWSP  188 (415)
T ss_dssp             EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC---EEEE-EESSCEEEEEECT
T ss_pred             EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC---EEEe-CCCCcceeeEEcC
Confidence            455555566555554              145555544 3      3599999975432   3343 4778899999999


Q ss_pred             CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e---c--CeEEEEEcCCceeeeEeecc
Q 015650          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---E--QKIFVYNFADLKLLHQIETI  213 (403)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~---d--~~i~i~d~~~~~~~~~~~~~  213 (403)
                      ++..++.++.+..  ...|++||+.+++......+...+.+++|+|||..++ .   +  ..|++||+++++. ..+..+
T Consensus       189 dg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~  265 (415)
T 2hqs_A          189 DGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG  265 (415)
T ss_dssp             TSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC
T ss_pred             CCCEEEEEEecCC--CcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC
Confidence            9988887765500  0399999999998765444888999999999998766 2   3  4599999988765 556667


Q ss_pred             CCCceeEEEeeCCCeEEEEeeCCccC--eEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC---CcEEEEEEc
Q 015650          214 ANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNT  288 (403)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~  288 (403)
                      ...+..++|+|+++.+++.+  ..++  .|.+||+.++....+..+...+.+++|+|+|++|++++.+   .. |++||+
T Consensus       266 ~~~~~~~~~spdg~~l~~~s--~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~  342 (415)
T 2hqs_A          266 RSNNTEPTWFPDSQNLAFTS--DQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDL  342 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE-EEEEET
T ss_pred             CCcccceEECCCCCEEEEEE--CCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceE-EEEEEC
Confidence            77888999999998766554  2334  6888899888877777788889999999999999988765   46 999999


Q ss_pred             CCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC---cEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccc
Q 015650          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (403)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (403)
                      .+++.. .+..  + ..+.+++|+|||++|++++.++   .|++||++.+.                             
T Consensus       343 ~~~~~~-~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-----------------------------  389 (415)
T 2hqs_A          343 ATGGVQ-VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-----------------------------  389 (415)
T ss_dssp             TTCCEE-ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-----------------------------
T ss_pred             CCCCEE-EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-----------------------------
Confidence            988874 4443  3 3799999999999999888776   79999987443                             


Q ss_pred             eeeeeeeeEEEEEeCCCceEEEeccCCC
Q 015650          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (403)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~fs~d~~  393 (403)
                             ..++..+.+.+..++|+|...
T Consensus       390 -------~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          390 -------KARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             -------EEECCCSSSEEEEEEECCCCC
T ss_pred             -------EEEeeCCCCCCcCCccccccc
Confidence                   223455667899999999653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=6.8e-24  Score=190.28  Aligned_cols=266  Identities=14%  Similarity=0.115  Sum_probs=201.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc--------CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCCC
Q 015650           84 PPPTLLHISFNQDHGCFAAGT--------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYP  154 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~--------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~  154 (403)
                      ....+..++|+|+|++|++++        ++.|.+||..+++...  .+.  .......+.+++++. ++++...+    
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~--~~~~~~~~~~s~dg~~l~v~~~~~----  110 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ--AIH--NDLKPFGATINNTTQTLWFGNTVN----  110 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE--EEE--ESSCCCSEEEETTTTEEEEEETTT----
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE--EEe--cCCCcceEEECCCCCEEEEEecCC----
Confidence            345688999999999888776        2349999998877653  333  223356778888765 55555656    


Q ss_pred             CceEEEEECCCCceeEEEec-CC---------ceeEEEEecCceEEE--e---cCeEEEEEcCCceeeeEeeccCCCcee
Q 015650          155 LNKVMIWDDHQSRCIGELSF-RS---------EVRSVKLRRDRIIVV--L---EQKIFVYNFADLKLLHQIETIANPKGL  219 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~~-~~---------~i~~~~~~~~~~~~~--~---d~~i~i~d~~~~~~~~~~~~~~~~~~~  219 (403)
                       +.|.+||..+++.+..+.. ..         .+.+++|+|++..++  .   ++.|++||+.+++.+..+..+......
T Consensus       111 -~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          111 -SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             -TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             -CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence             8999999999998888873 21         268899999987655  2   678999999999988888755556788


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE-Eee----cCCceEEEEEcCCCCEEEEEeCC-CcEEEEEEcCCCcE
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMA----HDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTL  293 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~-~~~----~~~~i~~~~~sp~g~~l~s~~~d-g~~i~iwd~~~~~~  293 (403)
                      ++++++++.++++.   .++.|.+||..+++... +..    +...+..++|+|+|++|+.++.+ +. |.+||+.+++.
T Consensus       190 ~~~s~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~  265 (353)
T 3vgz_A          190 LALDSEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNI  265 (353)
T ss_dssp             CEEETTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCE
T ss_pred             EEECCCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcE
Confidence            99999998766553   58999999998866543 332    45568889999999988777665 67 99999999999


Q ss_pred             EEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeee
Q 015650          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS  372 (403)
Q Consensus       294 ~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (403)
                      +..+..+   . ...++|+|+|++++++. .++.|.+||+.+++.                                   
T Consensus       266 ~~~~~~~---~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-----------------------------------  306 (353)
T 3vgz_A          266 LAKVAAP---E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-----------------------------------  306 (353)
T ss_dssp             EEEEECS---S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE-----------------------------------
T ss_pred             EEEEEcC---C-CceEEECCCCCEEEEEECCCCeEEEEECCCCeE-----------------------------------
Confidence            8888753   1 25699999999766555 789999999988763                                   


Q ss_pred             eEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       373 ~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      ...+.. ...+..++|+|||++|+++..+|
T Consensus       307 ~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          307 VKTFDT-PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence            111222 23578899999999998887764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=2.2e-24  Score=203.79  Aligned_cols=266  Identities=11%  Similarity=0.122  Sum_probs=203.6

Q ss_pred             EEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC--CCCce
Q 015650           92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD--HQSRC  168 (403)
Q Consensus        92 ~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~--~~~~~  168 (403)
                      +|+|++.+++++. ++.|.+||..+++..  ..+..++.  +..+.|++++.++++++.+     +.|++||+  .+++.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~--~~i~~g~~--~~~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV--KVIDTGYA--VHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTK  214 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEE--EEEECSTT--EEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEE--EEEecCcc--cceEEECCCCCEEEEECCC-----CeEEEEECcCCCCcE
Confidence            3889998888887 455999999888765  44542333  7789999999999998888     99999999  88999


Q ss_pred             eEEEecCCceeEEEEec----CceEEE----ecCeEEEEEcCCceeeeEeecc-----------CCCceeEEEeeCCCeE
Q 015650          169 IGELSFRSEVRSVKLRR----DRIIVV----LEQKIFVYNFADLKLLHQIETI-----------ANPKGLCAVSQGVGSL  229 (403)
Q Consensus       169 ~~~~~~~~~i~~~~~~~----~~~~~~----~d~~i~i~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  229 (403)
                      +..+.+...+..++|+|    |+++++    .+++|.+||..++++++.+...           ...+..+.+++++..+
T Consensus       215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence            88888777889999999    998776    3799999999999998887652           1256778899988765


Q ss_pred             EEEeeCCccCeEEEEEccCCce-e-EEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcEEEEEecCC--Ccc
Q 015650          230 VLVCPGLQKGQVRVEHYASKRT-K-FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGA--DRA  304 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~-~-~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~--~~~  304 (403)
                      ++..  ..++.|.+||+..... . ....+...+.++.|+|+|++|++++ .+++ |.+||+.+++++..+..+.  |.+
T Consensus       295 ~vs~--~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g  371 (543)
T 1nir_A          295 IVNV--KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPG  371 (543)
T ss_dssp             EEEE--TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCT
T ss_pred             EEEE--CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCC
Confidence            5543  5789999999987432 2 1234667788999999999877655 5778 9999999999998887532  333


Q ss_pred             cEEEEEeCCC-CCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeee-eeEEEEEeCC
Q 015650          305 EIYSLAFSSN-AQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW-SVAQFRLVEG  381 (403)
Q Consensus       305 ~v~~l~~s~d-~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  381 (403)
                      ....+ ++|+ +.+++++. .|++|.+||+++.+...                             ..| .+.++..+.+
T Consensus       372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~-----------------------------~~~~~v~~l~~~g~  421 (543)
T 1nir_A          372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ-----------------------------YAWKKVAELQGQGG  421 (543)
T ss_dssp             TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT-----------------------------TBTSEEEEEECSCS
T ss_pred             CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch-----------------------------hcCeEEEEEEcCCC
Confidence            33333 4677 66667765 68999999999843100                             011 2445677777


Q ss_pred             CceEEEeccCCCEEEEEc
Q 015650          382 SPYIVAFGHQKNTVVILG  399 (403)
Q Consensus       382 ~~~~~~fs~d~~~l~~~~  399 (403)
                      .+..++|||||++|++++
T Consensus       422 ~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          422 GSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             CCCCEECCTTCCEEEECC
T ss_pred             CceEEEcCCCCCcEEEec
Confidence            778899999999999986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=2.3e-24  Score=212.73  Aligned_cols=237  Identities=14%  Similarity=0.070  Sum_probs=181.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEc--CC-----cEEEEEcCCCeeEEEEecccCcc----------------------eeEEEE
Q 015650           85 PPTLLHISFNQDHGCFAAGT--DH-----GFRIYNCDPFREIFRRDFERGGG----------------------IGVVEM  135 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~--~~-----~i~iw~~~~~~~~~~~~~~~~~~----------------------~~v~~~  135 (403)
                      ...|.+++|+|||++|++++  ++     .|++|++.+++........ .+.                      ..+..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK-VVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG-GTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchh-hcccccccccchhhhhhhhhhhccccCccee
Confidence            45799999999999999887  44     5999999887755333222 121                      346788


Q ss_pred             eeeCCeEEEeeCCCCCCCCCceEEEEECCCC---ceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEe
Q 015650          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI  210 (403)
Q Consensus       136 ~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~  210 (403)
                      .|++|+..++.++.      +.|++||+.++   +......+...+..++|+|||+.++  .++.|++||+.+++.....
T Consensus       115 ~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             EECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             EECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            99999988777664      79999999988   5443333778899999999999887  6889999999988765544


Q ss_pred             eccCCC----------------ceeEEEeeCCCeEEEEeeCCccC---------------------------------eE
Q 015650          211 ETIANP----------------KGLCAVSQGVGSLVLVCPGLQKG---------------------------------QV  241 (403)
Q Consensus       211 ~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~d~---------------------------------~i  241 (403)
                      ..+...                +..++|+|+++.++++.   .|+                                 .|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~---~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR---IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE---EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEE---EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            332221                36799999999876654   222                                 78


Q ss_pred             EEEEccC-CceeEEe---ecCCceEEEEEcCCCCEEEEEeC-----CCcEEEEEEcCCCcEEEEEecCCCcc---cEEEE
Q 015650          242 RVEHYAS-KRTKFIM---AHDSRIACFALTQDGQLLATSST-----KGTLVRIFNTLDGTLLQEVRRGADRA---EIYSL  309 (403)
Q Consensus       242 ~v~d~~~-~~~~~~~---~~~~~i~~~~~sp~g~~l~s~~~-----dg~~i~iwd~~~~~~~~~~~~~~~~~---~v~~l  309 (403)
                      .+||+.+ ++...+.   .|...+..++| |||++|++++.     +.. |++||+.+++....+..+ ...   .+..+
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~  342 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHET-SPTWVPLHNSL  342 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCSCC
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcC-CCCcCCcCCce
Confidence            8889888 7766554   47788999999 99999987654     456 999999999887776642 112   45689


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      +|+|||+++++++.||.++||.++.
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~  367 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDS  367 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECS
T ss_pred             EECCCCeEEEEecCCCccEEEEEcC
Confidence            9999999999999999999998874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=3.8e-23  Score=195.27  Aligned_cols=270  Identities=14%  Similarity=0.124  Sum_probs=198.3

Q ss_pred             eEEEEEcCCCCEEEEEc-CCcEEEEEc--CCCeeEEEEecccCcceeEEEEeeeC----CeEEEeeCC-CCCCCCCceEE
Q 015650           88 LLHISFNQDHGCFAAGT-DHGFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRC----NILALVGGG-PDPQYPLNKVM  159 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~-~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~s~~-~d~~~~~~~i~  159 (403)
                      +.+++|+|||++|++++ ++.|++||+  .+.+..  ..+.  +......++|++    ++..+++++ .+     ++|.
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~--~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~-----~~v~  251 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--AEIK--IGIEARSVESSKFKGYEDRYTIAGAYWP-----PQFA  251 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--EEEE--CCSEEEEEEECCSTTCTTTEEEEEEEES-----SEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE--EEEe--cCCCcceEEeCCCcCCCCCEEEEEEccC-----CeEE
Confidence            88999999999999887 555999999  665544  5565  445678999999    887776665 35     8999


Q ss_pred             EEECCCCceeEEEec------------CCceeEEEEecCceEEE----ecCeEEEEEcCCceeee--EeeccCCCceeEE
Q 015650          160 IWDDHQSRCIGELSF------------RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH--QIETIANPKGLCA  221 (403)
Q Consensus       160 iwd~~~~~~~~~~~~------------~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~  221 (403)
                      +||..+++++..+..            ...+..+.+++++..++    .+++|.+||+.+.+.+.  .+. +......+.
T Consensus       252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~  330 (543)
T 1nir_A          252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGG  330 (543)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEE
T ss_pred             EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCce
Confidence            999999999888762            12688999999765544    37899999998866544  443 445567899


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccCCceeE-Eee----cCCceEEEEEcCC-CCEEEEEe-CCCcEEEEEEcCC----
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMA----HDSRIACFALTQD-GQLLATSS-TKGTLVRIFNTLD----  290 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~-~~~----~~~~i~~~~~sp~-g~~l~s~~-~dg~~i~iwd~~~----  290 (403)
                      |+|+++.++++.  ..++.|.+||..++++.. +..    |.+....+ ++|+ |.+++++. .|++ |.|||+.+    
T Consensus       331 ~spdg~~l~va~--~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~-V~v~d~~~~~~~  406 (543)
T 1nir_A          331 WDSSHRYFMTAA--NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS-ISLIGTDPKNHP  406 (543)
T ss_dssp             ECTTSCEEEEEE--GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCT
T ss_pred             ECCCCCEEEEEe--cCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce-EEEEEeCCCCCc
Confidence            999988665543  467899999999876544 332    54433333 5777 66666665 5788 99999988    


Q ss_pred             ---CcEEEEEecCCCcccEEEEEeCCCCCEEEEEe-------CCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccc
Q 015650          291 ---GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK  360 (403)
Q Consensus       291 ---~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (403)
                         +++++++..  |...+..++|+|||++|++++       .+++|.+||+++.+...+.                   
T Consensus       407 ~~~~~~v~~l~~--~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~-------------------  465 (543)
T 1nir_A          407 QYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV-------------------  465 (543)
T ss_dssp             TTBTSEEEEEEC--SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-------------------
T ss_pred             hhcCeEEEEEEc--CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE-------------------
Confidence               899999996  556788899999999999987       2779999999998842110                   


Q ss_pred             ccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEc
Q 015650          361 GVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG  399 (403)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~  399 (403)
                        ++   -..|.  -+..+...+..++|+|||++|+++.
T Consensus       466 --~~---v~~~~--~~~~~~~~~~~~~~~~~g~~~~~s~  497 (543)
T 1nir_A          466 --LP---IAEWA--DLGEGAKRVVQPEYNKRGDEVWFSV  497 (543)
T ss_dssp             --EC---HHHHH--CCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred             --ee---chhhc--ccCCCCCceEeccCCCCCCEEEEEe
Confidence              00   00000  0111234677899999999999773

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=2.2e-24  Score=196.54  Aligned_cols=227  Identities=13%  Similarity=0.034  Sum_probs=146.6

Q ss_pred             cccCCCCCCeEEEEEcC--------CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCC
Q 015650           79 STSSSPPPTLLHISFNQ--------DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGG  148 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~--------d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~  148 (403)
                      ..+.+|.+.|++++|+|        |+++||+|+ |++|+|||+.+.....  .+. .|...+.+++|+|++ ..+++++
T Consensus       130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--~~~-~~~~~v~~v~~~p~~~~~l~~~~  206 (393)
T 4gq1_A          130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--AGY-PLSSPGISVQFRPSNPNQLIVGE  206 (393)
T ss_dssp             CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--EEE-ECSSCEEEEEEETTEEEEEEEEE
T ss_pred             cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--eec-CCCCCcEEEEECCCCCceEEecC
Confidence            45789999999999998        889999998 5559999998776553  333 477889999999987 4789999


Q ss_pred             CCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEEe-eCC
Q 015650          149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVS-QGV  226 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~  226 (403)
                      .|     ++|++||+.+++...... +........+..              +............+...+..+.+. +++
T Consensus       207 ~d-----~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~--------------~~~~~~~~~~~~~~~~~v~~v~~~~~dg  267 (393)
T 4gq1_A          207 RN-----GNIRIFDWTLNLSAEENSQTELVKNPWLLTL--------------NTLPLVNTCHSSGIASSLANVRWIGSDG  267 (393)
T ss_dssp             TT-----SEEEEEETTCCC----------CSCCCSEEE--------------ESGGGC------CCSSSCSEEEEETTTT
T ss_pred             CC-----CEEEEEECCCCcccccccccCCcccceEEec--------------ccccceeeeecccccccceeeeeecCCC
Confidence            98     999999999987766554 222111111110              111111111223566777888887 565


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEE------------------EEEcC--CCCEEEEEeCCCcEEEE
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIAC------------------FALTQ--DGQLLATSSTKGTLVRI  285 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~------------------~~~sp--~g~~l~s~~~dg~~i~i  285 (403)
                      ..  +++ ++.|+.+++||+...+. ..+..|...+..                  ..|+|  ++.++++|+.||. |+|
T Consensus       268 ~~--l~s-~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V~l  343 (393)
T 4gq1_A          268 SG--ILA-MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-IQL  343 (393)
T ss_dssp             CE--EEE-ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-EEE
T ss_pred             CE--EEE-EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE-EEE
Confidence            53  333 35899999999876432 223333332222                  23333  3446778889999 999


Q ss_pred             EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      ||+.+++++..+..  |...|++++|+|||++||+++++| +.+|++..
T Consensus       344 wd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          344 INTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             EETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             EECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence            99999988877765  567999999999999999998766 77777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=1.1e-23  Score=183.75  Aligned_cols=248  Identities=9%  Similarity=-0.007  Sum_probs=186.1

Q ss_pred             CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC-CceeEEEe-c-CCceeEE
Q 015650          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-F-RSEVRSV  181 (403)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~-~~~~~~~~-~-~~~i~~~  181 (403)
                      ++.|++|++.+++..  ...  .+...+.++.|++++..++.+. +     +.|++||+.+ ++...... + ...+.++
T Consensus        21 ~~~i~~~d~~~~~~~--~~~--~~~~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR--VVW--QTPELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSPEKVDTGFATICNNDH   90 (297)
T ss_dssp             CEEEEEEETTTTEEE--EEE--EESSCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred             ceeEEEEeCCCCcee--eec--cCCcceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCceEeccccccccccce
Confidence            344999999887654  223  3677899999999998888776 4     8999999999 87766665 3 4678999


Q ss_pred             EEecCceEEE--e-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc--CCcee
Q 015650          182 KLRRDRIIVV--L-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTK  252 (403)
Q Consensus       182 ~~~~~~~~~~--~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~--~~~~~  252 (403)
                      +|+|++.+++  .     ...|+.|++.+++ ...+..+ ..+..++|+|+++.++++.  ..++.+++|+++  ++...
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~--~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCG--IRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEE--EETTEEEEEEEETTTCCEE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEE--CCCCceEEEEEECCCCcce
Confidence            9999998887  2     1355555655554 3344333 3467789999988665443  467888999854  46667


Q ss_pred             EEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcC-CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC------
Q 015650          253 FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------  324 (403)
Q Consensus       253 ~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d------  324 (403)
                      .+..+...+.+++|+|+|++|+.++ .++. ++||++. .+..+..+..  +...+..++|+|+|++|++++.+      
T Consensus       167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  243 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDH  243 (297)
T ss_dssp             ECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred             EcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence            7777888999999999999888766 4888 9999886 4555666654  55789999999999999988765      


Q ss_pred             -----CcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEc
Q 015650          325 -----GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG  399 (403)
Q Consensus       325 -----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~  399 (403)
                           +.|++||+++++.                                 ..+..+..+...+..++|+|||++|++++
T Consensus       244 ~~~~~~~l~~~d~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          244 PRDLDVRVQLMDMDGGNV---------------------------------ETLFDLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             CSSEEEEEEEEETTSCSC---------------------------------EEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             cccCceEEEEEecCCCCc---------------------------------eeeeccCCCCcccccceECCCCCEEEEEE
Confidence                 5699999987762                                 01223445677889999999999999888


Q ss_pred             cCC
Q 015650          400 MDG  402 (403)
Q Consensus       400 ~dG  402 (403)
                      .|.
T Consensus       291 ~~~  293 (297)
T 2ojh_A          291 YFP  293 (297)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.6e-22  Score=178.42  Aligned_cols=229  Identities=14%  Similarity=0.128  Sum_probs=166.4

Q ss_pred             EEcCCCCE-EEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEE-EeeCCCCCCCCCceEEEEECCCCce
Q 015650           92 SFNQDHGC-FAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        92 ~~s~d~~~-l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~d~~~~~~~i~iwd~~~~~~  168 (403)
                      .|.+++.+ ++++. ++.|++||..+++.......   +.... .+.|++++.. +++...+     +.|.+||+.+++.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~   74 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFC-----QTLVQIETQLEPP   74 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTT-----CEEEEEECSSSSC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCce
Confidence            46666655 45555 45599999988876543332   34445 8999998864 4444445     8999999999987


Q ss_pred             -eEEEec-CCceeEEEEecCceEEE--e-c-C--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650          169 -IGELSF-RSEVRSVKLRRDRIIVV--L-E-Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       169 -~~~~~~-~~~i~~~~~~~~~~~~~--~-d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                       ...+.. ..+..+++|+|++.+++  . + +  .|++||+.+++.+..+... .....++|+|+++.++++.  ..++.
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~--~~~~~  151 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILID--RSSAN  151 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEE--ETTTT
T ss_pred             eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEe--cCCCc
Confidence             667764 44444499999998777  2 3 3  8999999999888877654 3457899999998766554  34567


Q ss_pred             -EEEEEccCCc-e----eEEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcE---EEEEecCCCcccEEEEE
Q 015650          241 -VRVEHYASKR-T----KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLA  310 (403)
Q Consensus       241 -i~v~d~~~~~-~----~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~  310 (403)
                       |.+|++.... +    ............++|+|+|++|+.++ .++. |++||+.+++.   +..+..   ...+..++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~---~~~~~~~~  227 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGT---NNLPGTIV  227 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEEC---SSCCCCEE
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccC---CCCCceEE
Confidence             9999987522 2    12223455689999999999766555 5777 99999999988   777773   36678999


Q ss_pred             eCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650          311 FSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       311 ~s~d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                      |+|||++|+++. .++.|.+||+.+++
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence            999999876665 57889999998876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=1.4e-23  Score=201.27  Aligned_cols=231  Identities=9%  Similarity=0.014  Sum_probs=168.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC---CCCCCCceEE
Q 015650           85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVM  159 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~~~~~~i~  159 (403)
                      ...|.+++|+|||+.||+++  ++.++||++++++.   ..+..++...+..+.|+|+ ..+++++.   +     ....
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~-----~~~~   91 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPHYGVG-RVILVRDVSKGA-----EQHA   91 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEECTTCS-EEEEEEECSTTS-----CCEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---EeeecccccccccccCCCC-eEEEEeccCCCC-----cceE
Confidence            44699999999999999876  45599999866543   3343233368899999999 55554432   2     4455


Q ss_pred             EEECCC---CceeEEEecCCceeEEEEecCce--EEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          160 IWDDHQ---SRCIGELSFRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       160 iwd~~~---~~~~~~~~~~~~i~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      +|.+..   +... .+.....+...+|+|++.  +++  .++.+.+||+.+++.........   ..++++|+++.++.+
T Consensus        92 l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~  167 (582)
T 3o4h_A           92 LFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             EEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred             EEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence            554432   3322 444333455668888774  344  35566799999887655544322   788999999976544


Q ss_pred             eeC-CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC--cEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          233 CPG-LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       233 ~~g-~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg--~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                      ... ...+.|++||+.++....+..|...+..++|+|||++|+++..++  . |++||+.+++.. .+..  +...+..+
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~--~~~~~~~~  243 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLEL--PSKDFSSY  243 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCC--SCSHHHHH
T ss_pred             EEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccC--CCcChhhh
Confidence            311 112679999999988888888999999999999999999888888  7 999999998887 5543  44556666


Q ss_pred             E--------eCCCCCEEEEEeCCCcEEEEEe
Q 015650          310 A--------FSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       310 ~--------~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                      +        |+|||.++++++.|+.+++|++
T Consensus       244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          244 RPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            6        9999998999999999999999

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=3.1e-22  Score=178.58  Aligned_cols=240  Identities=10%  Similarity=0.068  Sum_probs=170.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC--CcEEEEEcC--CCeeEEEEecccCcceeEEEEeeeCCeEEEe-eCCCCCCCCCce
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTD--HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDPQYPLNK  157 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~--~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-s~~~d~~~~~~~  157 (403)
                      .|...+.+++|+|+|++|++++.  +.|++|+++  +++......+. .+ ..+..+.|++++..++ ++..+     +.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~~-----~~  107 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LP-GSLTHISTDHQGQFVFVGSYNA-----GN  107 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CS-SCCSEEEECTTSSEEEEEETTT-----TE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc-cC-CCCcEEEEcCCCCEEEEEecCC-----Ce
Confidence            35567888999999998888774  459999997  44444334444 22 2678889999887554 44445     89


Q ss_pred             EEEEECC---CCceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCC-ceeee----Eeec-cCCCceeEEEee
Q 015650          158 VMIWDDH---QSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLH----QIET-IANPKGLCAVSQ  224 (403)
Q Consensus       158 i~iwd~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~----~~~~-~~~~~~~~~~~~  224 (403)
                      |.+||+.   ..+.+..+.....+.+++|+|++.+++    .++.|++||+.+ ++...    .+.. .......++|+|
T Consensus       108 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  187 (343)
T 1ri6_A          108 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP  187 (343)
T ss_dssp             EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred             EEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC
Confidence            9999994   444555555556789999999997665    378999999987 54432    2222 233556789999


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccC--Ccee---EEee---c---CCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcC--C
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYAS--KRTK---FIMA---H---DSRIACFALTQDGQLLATSS-TKGTLVRIFNTL--D  290 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~--~~~~---~~~~---~---~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~--~  290 (403)
                      +++.++++.  ..++.|.+|+++.  +...   .+..   .   ...+..++|+|+|++|+++. .++. |++||+.  +
T Consensus       188 dg~~l~~~~--~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~  264 (343)
T 1ri6_A          188 NEQYAYCVN--ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDG  264 (343)
T ss_dssp             TSSEEEEEE--TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTS
T ss_pred             CCCEEEEEe--CCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCC
Confidence            988655543  4689999999954  3332   2221   1   23567899999999887544 6788 9999998  2


Q ss_pred             --CcEEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecC
Q 015650          291 --GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       291 --~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~  335 (403)
                        .+.+..+..  + ..+.+++|+|+|++|++++ .++.|.+|+++..
T Consensus       265 ~~~~~~~~~~~--~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~  309 (343)
T 1ri6_A          265 SVLSKEGFQPT--E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  309 (343)
T ss_dssp             CCEEEEEEEEC--S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             CceEEeeeecC--C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence              344445553  2 3488999999999988887 6899999988754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=5.7e-23  Score=201.62  Aligned_cols=235  Identities=11%  Similarity=0.104  Sum_probs=168.0

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCee--EEEEeccc-------------CcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFER-------------GGGIGVVEMLFRCNILALVGGGPDPQ  152 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~--~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (403)
                      +..+.|.  |..++++.+++| +||+.+++.  ........             .+...+.++.|++++.++++.+    
T Consensus        28 ~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~----  100 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQ----  100 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEET----
T ss_pred             CCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEEC----
Confidence            4446787  556666665669 999988765  32221110             0014688999999966666643    


Q ss_pred             CCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCC-----ceeeeEeeccCCC---------
Q 015650          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFAD-----LKLLHQIETIANP---------  216 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~-----~~~~~~~~~~~~~---------  216 (403)
                         +.|++||+.+++......+...+..++|+|||..++  .++.|++||+.+     ++...........         
T Consensus       101 ---~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  177 (706)
T 2z3z_A          101 ---GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ  177 (706)
T ss_dssp             ---TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred             ---CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence               899999999887766655778899999999998877  689999999988     7665544333322         


Q ss_pred             -----ceeEEEeeCCCeEEEEee------------------------------CCccCeEEEEEccCCceeEEe---ecC
Q 015650          217 -----KGLCAVSQGVGSLVLVCP------------------------------GLQKGQVRVEHYASKRTKFIM---AHD  258 (403)
Q Consensus       217 -----~~~~~~~~~~~~~~~~~~------------------------------g~~d~~i~v~d~~~~~~~~~~---~~~  258 (403)
                           +..+.|+|+++.++++..                              ...+..|++||+.++....+.   .|.
T Consensus       178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  257 (706)
T 2z3z_A          178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE  257 (706)
T ss_dssp             GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred             hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence                 478999999987665531                              113468999999987765543   466


Q ss_pred             CceEEEEEcCCCCEEEEEeCCC-----cEEEEEEcCCCcEEEEEecCCCcc---cEEEEEeCC--CCCEEEEEeCCCcEE
Q 015650          259 SRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRA---EIYSLAFSS--NAQWLAVSSDKGTVH  328 (403)
Q Consensus       259 ~~i~~~~~sp~g~~l~s~~~dg-----~~i~iwd~~~~~~~~~~~~~~~~~---~v~~l~~s~--d~~~l~s~~~dg~v~  328 (403)
                      ..+.+++|+|||++|++++.++     . |++||+.+++....+....+..   .+.+++|+|  ||++|+++..||.++
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~  336 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH  336 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence            7899999999999999887765     6 9999999984444443211222   246789999  999999999999999


Q ss_pred             EEEee
Q 015650          329 VFNLK  333 (403)
Q Consensus       329 iwd~~  333 (403)
                      ||+++
T Consensus       337 l~~~~  341 (706)
T 2z3z_A          337 LYLYD  341 (706)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99998

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=2.1e-22  Score=179.22  Aligned_cols=252  Identities=11%  Similarity=0.032  Sum_probs=182.4

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcce-eEEEEeeeCCe-EEEeeCCCCCCCCCceEEEEECCCCceeEEEec
Q 015650           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (403)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~  174 (403)
                      ++|+++. ++.|++||+.+++......+.  +.. .+..+.|++++ .++++...+     +.|.+||+.+++.+..+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeEEc
Confidence            3566666 556999999887765333332  211 36678899987 455666666     8999999999998887774


Q ss_pred             CC------ceeEEEEecCceEEE-e--------------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          175 RS------EVRSVKLRRDRIIVV-L--------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       175 ~~------~i~~~~~~~~~~~~~-~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      ..      .+..++|+|++.+++ .              ++.|++||+.+++.+..+.. ...+..++++|+++.++++ 
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-  152 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL-  152 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred             CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-
Confidence            33      688999999997665 3              38999999999888877765 3456778899999876554 


Q ss_pred             eCCccCeEEEEEccCCceeE-EeecCCceEEEEEcCCCCEEEEEeCCCc-----------------------EEEEEEcC
Q 015650          234 PGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGT-----------------------LVRIFNTL  289 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~s~~~dg~-----------------------~i~iwd~~  289 (403)
                          ++.|.+||+.+++... +..+. ....+.|+|+|++|+..+..+.                       .|.+||+.
T Consensus       153 ----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  227 (337)
T 1pby_B          153 ----GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             ----SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             ----CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence                4789999998876543 33222 1123378999987765554332                       16899999


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeee
Q 015650          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS  369 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (403)
                      +++.. .+....+...+.+++|+|||++|+++  ++.|++||+.+++.                                
T Consensus       228 ~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~--------------------------------  272 (337)
T 1pby_B          228 TGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS--------------------------------  272 (337)
T ss_dssp             TCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE--------------------------------
T ss_pred             CCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC--------------------------------
Confidence            98875 33332355678899999999999988  78999999987762                                


Q ss_pred             eeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          370 EWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                         ...+. ....+..++|+|||++|++++.||
T Consensus       273 ---~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~  301 (337)
T 1pby_B          273 ---IKRVP-LPHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             ---EEEEE-CSSCCCEEEECTTSCEEEEESBSS
T ss_pred             ---cceec-CCCceeeEEECCCCCEEEEEcCCC
Confidence               11122 234678899999999999988775

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1e-23  Score=207.41  Aligned_cols=239  Identities=9%  Similarity=0.009  Sum_probs=171.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce---eEEEEeeeCCeEEEeeCCCCCCC----CCceEE
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGPDPQY----PLNKVM  159 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~s~~~d~~~----~~~~i~  159 (403)
                      .+.+++|+|||++++++.++.|++||+.+++..  ..+. ++..   .+..+.|+||+..++.+..+...    ..+.|+
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~--~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTST--VLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCE--EEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEE--EEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            466789999999887755667999999887765  3343 3333   48899999999887776543110    126899


Q ss_pred             EEECCCCceeEEEe----cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCc----------------
Q 015650          160 IWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK----------------  217 (403)
Q Consensus       160 iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~----------------  217 (403)
                      +||+.+++. ..+.    +...+..++|+|||+.++  .++.|++||+.+++..+....+...+                
T Consensus        95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            999999876 3333    333488999999998777  58899999999887766554433333                


Q ss_pred             --eeEEEeeCCCeEEEEeeCC-------------------------------ccCeEEEEEccCCce-eEEeec------
Q 015650          218 --GLCAVSQGVGSLVLVCPGL-------------------------------QKGQVRVEHYASKRT-KFIMAH------  257 (403)
Q Consensus       218 --~~~~~~~~~~~~~~~~~g~-------------------------------~d~~i~v~d~~~~~~-~~~~~~------  257 (403)
                        ..++|+|+++.++++....                               .+..|++||+.++.. ..+..+      
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence              6799999998766654110                               022799999988763 555543      


Q ss_pred             CCceEEEEEcCCCCEEEEEeCC----CcEEEEEEcCCCcEEEEEecCCCcccE----EEEEeCCCCCEEEE--EeCCC--
Q 015650          258 DSRIACFALTQDGQLLATSSTK----GTLVRIFNTLDGTLLQEVRRGADRAEI----YSLAFSSNAQWLAV--SSDKG--  325 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~~~d----g~~i~iwd~~~~~~~~~~~~~~~~~~v----~~l~~s~d~~~l~s--~~~dg--  325 (403)
                      ...+..++|+|||++|++.+..    .. |++||+.++++...+..+ +...+    ..++|+|||+.|+.  ...++  
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence            5678999999999998776543    45 999999999887666532 23333    37899999997775  44667  


Q ss_pred             ----cEEEEE
Q 015650          326 ----TVHVFN  331 (403)
Q Consensus       326 ----~v~iwd  331 (403)
                          .|++||
T Consensus       332 ~~~~~l~~~d  341 (723)
T 1xfd_A          332 GKFYHITVSS  341 (723)
T ss_dssp             SCEEEEEEEC
T ss_pred             cceeEEEEEe
Confidence                455555

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.1e-22  Score=200.68  Aligned_cols=265  Identities=10%  Similarity=0.036  Sum_probs=192.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe--eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      .|.+++|+|||++|++++++.|++|++.++.  ..  ..+. .+...+..+.|+|++..++.+..      +.|++||+.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~--~~l~-~~~~~~~~~~~SPDG~~la~~~~------~~i~~~d~~  180 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV--RQLT-HGEGFATDAKLSPKGGFVSFIRG------RNLWVIDLA  180 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC--CBCC-CSSSCEEEEEECTTSSEEEEEET------TEEEEEETT
T ss_pred             CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE--EEcc-cCCcccccccCCCCCCEEEEEeC------CcEEEEecC
Confidence            4788999999999999988779999998762  22  3343 46677999999999988877764      689999999


Q ss_pred             CCceeEEEe-cCCc----------------eeEEEEecCceEEE---ecC------------------------------
Q 015650          165 QSRCIGELS-FRSE----------------VRSVKLRRDRIIVV---LEQ------------------------------  194 (403)
Q Consensus       165 ~~~~~~~~~-~~~~----------------i~~~~~~~~~~~~~---~d~------------------------------  194 (403)
                      +++...... +...                +..+.|+|||+.++   .|+                              
T Consensus       181 ~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          181 SGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             TTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             CCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence            887665444 2221                47899999998777   344                              


Q ss_pred             ---eEEEEEcCC-ceeeeEee--ccCCCceeEEEeeCCCeEEEEee--CCccCeEEEEEccCCceeEEe-ecCC----ce
Q 015650          195 ---KIFVYNFAD-LKLLHQIE--TIANPKGLCAVSQGVGSLVLVCP--GLQKGQVRVEHYASKRTKFIM-AHDS----RI  261 (403)
Q Consensus       195 ---~i~i~d~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--g~~d~~i~v~d~~~~~~~~~~-~~~~----~i  261 (403)
                         .|++||+.+ ++......  .+...+..++| |+++.+++...  +..+..|++||+.++....+. .+..    .+
T Consensus       261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~  339 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH  339 (741)
T ss_dssp             CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence               789999988 77554332  24556778999 99997766642  234678999999987665543 3332    45


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCCcccEEEE-EeCCCCCEEEEE-eCCC--cEEEEEeecCC
Q 015650          262 ACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVS-SDKG--TVHVFNLKVNS  336 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l-~~s~d~~~l~s~-~~dg--~v~iwd~~~~~  336 (403)
                      ..++|+|||+++++++.++. ++||.+. +++ ...+..  +...|..+ .|+|||+.|+.. +.++  .++||+++...
T Consensus       340 ~~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g  415 (741)
T 2ecf_A          340 NSLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG  415 (741)
T ss_dssp             SCCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC
T ss_pred             CceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC
Confidence            68999999999999999997 7888765 455 666654  45678887 599999987654 4555  89999998633


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                      ..                                  ..++.. .+.+..++|||||++|+....
T Consensus       416 ~~----------------------------------~~~l~~-~~~~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          416 GQ----------------------------------PQRLSK-APGMHSASFARNASVYVDSWS  444 (741)
T ss_dssp             CC----------------------------------CEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred             CC----------------------------------eeeccc-CCCceEEEECCCCCEEEEEec
Confidence            10                                  011111 335667899999999887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=2.8e-21  Score=172.33  Aligned_cols=258  Identities=10%  Similarity=0.114  Sum_probs=173.8

Q ss_pred             EEEEc-CCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeCC-CCCCCCCceEEEEECC--CCc--eeEEE
Q 015650          100 FAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDDH--QSR--CIGEL  172 (403)
Q Consensus       100 l~~~~-~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~i~iwd~~--~~~--~~~~~  172 (403)
                      ++++. ++.|++|+++. +.......+.  +...+..++|++++..++.++ .+     +.|.+|++.  +++  .+..+
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEE
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCC-----CeEEEEEecCCCCceeecccc
Confidence            34434 66699999963 3323333443  556677899999886554443 34     799999987  554  33445


Q ss_pred             ecCCceeEEEEecCceEEE----ecCeEEEEEcC---CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEE
Q 015650          173 SFRSEVRSVKLRRDRIIVV----LEQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (403)
Q Consensus       173 ~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d  245 (403)
                      .....+..++|+|++.+++    .++.|++||+.   ..+.+..+.. ...+..++|+++++.++++.  ..++.|.+||
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d  157 (343)
T 1ri6_A           81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPA--LKQDRICLFT  157 (343)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEE--GGGTEEEEEE
T ss_pred             ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEec--CCCCEEEEEE
Confidence            5445889999999998665    27889999994   4444555543 33567899999988665543  3679999999


Q ss_pred             ccC-CceeE-----Eee-cCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCC--CcE--EEEEecC----CCcccEEEE
Q 015650          246 YAS-KRTKF-----IMA-HDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLD--GTL--LQEVRRG----ADRAEIYSL  309 (403)
Q Consensus       246 ~~~-~~~~~-----~~~-~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~--~~~--~~~~~~~----~~~~~v~~l  309 (403)
                      +.. +....     +.. ....+.+++|+|+|++|++++ .++. |++||+..  ++.  ...+...    .....+..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            987 55432     222 345788999999999776555 6788 99999953  433  2333211    112357789


Q ss_pred             EeCCCCCEEEEE-eCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEe
Q 015650          310 AFSSNAQWLAVS-SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF  388 (403)
Q Consensus       310 ~~s~d~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  388 (403)
                      +|+|+|++|+++ ..++.|++||++.....                               ...+..+..+ +.+..++|
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-------------------------------~~~~~~~~~~-~~~~~~~~  284 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSVSEDGSV-------------------------------LSKEGFQPTE-TQPRGFNV  284 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCC-------------------------------EEEEEEEECS-SSCCCEEE
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEcCCCCc-------------------------------eEEeeeecCC-CccceEEE
Confidence            999999988754 47999999999843210                               0011222222 34788999


Q ss_pred             ccCCCEEEEEcc
Q 015650          389 GHQKNTVVILGM  400 (403)
Q Consensus       389 s~d~~~l~~~~~  400 (403)
                      +|||++|++++.
T Consensus       285 s~dg~~l~~~~~  296 (343)
T 1ri6_A          285 DHSGKYLIAAGQ  296 (343)
T ss_dssp             CTTSSEEEEECT
T ss_pred             CCCCCEEEEecC
Confidence            999999998884

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=7.2e-22  Score=175.58  Aligned_cols=242  Identities=10%  Similarity=0.065  Sum_probs=171.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc---eE
Q 015650           84 PPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN---KV  158 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~---~i  158 (403)
                      +...+ +++|+|+|++|++++  ++.|.+||..+++.. ...+. .+......+.|++++..+++...+     +   .|
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~-----~~~~~i  110 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQ-EGQSSMADVDITPDDQFAVTVTGL-----NHPFNM  110 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEE-ECSSCCCCEEECTTSSEEEECCCS-----SSSCEE
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecc-cCCCCccceEECCCCCEEEEecCC-----CCcccE
Confidence            34556 999999999766655  445999999877652 13343 233333338899998777754443     3   89


Q ss_pred             EEEECCCCceeEEEecCCceeEEEEecCceEEE-e---cCe-EEEEEcCCceeee----EeeccCCCceeEEEeeCCCeE
Q 015650          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQK-IFVYNFADLKLLH----QIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~---d~~-i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      .+||+.+++.+..+.......+++|+|++++++ .   ++. |.+|++.....+.    ...........++++|+++.+
T Consensus       111 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l  190 (331)
T 3u4y_A          111 QSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA  190 (331)
T ss_dssp             EEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred             EEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence            999999999988888767789999999997544 2   467 9999987633321    111223446788999998876


Q ss_pred             EEEeeCCccCeEEEEEccCCce---eEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcE--EEEEecC--C
Q 015650          230 VLVCPGLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL--LQEVRRG--A  301 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~---~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~--~~~~~~~--~  301 (403)
                      +++.  ..++.|.+||+.+++.   .........+..++|+|||++|+.++. ++. |.+||+.+++.  +..+...  .
T Consensus       191 ~v~~--~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~  267 (331)
T 3u4y_A          191 FVAN--LIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLI  267 (331)
T ss_dssp             EEEE--TTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCC
T ss_pred             EEEe--CCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCceeeeccccccccc
Confidence            6654  4678999999988664   333334567789999999998776654 666 99999999877  4444422  1


Q ss_pred             Ccc---cEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650          302 DRA---EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       302 ~~~---~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                      +..   ....++|+|||++|++++ .++.|++||+....
T Consensus       268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          268 DPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            112   235689999999886665 56799999998755

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1e-22  Score=207.80  Aligned_cols=267  Identities=9%  Similarity=0.085  Sum_probs=197.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      +.+|...+.++.|+++ .+++++.. +.++||.++...... ..+. .+. .+....|++++..++.+. +     +.|+
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~-~~l~-~~~-~~~~~~~SpDG~~la~~~-~-----~~i~  268 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL-RKHT-SFT-DYYPRHLNTDGRRILFSK-G-----GSIY  268 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC-EECC-CCC-SSCEEEEEESSSCEEEEE-T-----TEEE
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc-eEec-CCC-CcceeeEcCCCCEEEEEe-C-----CEEE
Confidence            4789999999999998 55566654 448899875422211 3343 222 344557888887666653 4     8999


Q ss_pred             EEECCCCceeEEEec------------CCceeEEEEe-cCceEEE--ecCeEEEEEcCCceeeeEeeccCC-CceeEEEe
Q 015650          160 IWDDHQSRCIGELSF------------RSEVRSVKLR-RDRIIVV--LEQKIFVYNFADLKLLHQIETIAN-PKGLCAVS  223 (403)
Q Consensus       160 iwd~~~~~~~~~~~~------------~~~i~~~~~~-~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~  223 (403)
                      +|++...+ +..+..            ...+..++|+ |||..++  .++.|++|++.+++... +..+.. .+..++|+
T Consensus       269 ~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s  346 (1045)
T 1k32_A          269 IFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD  346 (1045)
T ss_dssp             EECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECSS
T ss_pred             EecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCcceEEeeeEc
Confidence            99984443 333332            2368999999 9998776  68999999998776443 444555 66778888


Q ss_pred             eCCCeEEEEeeCCccCeEE-EEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC
Q 015650          224 QGVGSLVLVCPGLQKGQVR-VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~-v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (403)
                       +++.++++.   .+..+. +||+.++....+..|...+..++|+|||++|++++.++. |++||+.+++....+..  |
T Consensus       347 -dg~~l~~~s---~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~  419 (1045)
T 1k32_A          347 -TKVAFIHGT---REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--R  419 (1045)
T ss_dssp             -SEEEEEEEE---TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--S
T ss_pred             -CCCeEEEEE---CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--C
Confidence             766554443   367888 899988877777778889999999999999999999999 99999999998777754  6


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCC----------cEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeee
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKG----------TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS  372 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (403)
                      ...+.+++|+|||++|++++.++          .|++||+.+++.                                   
T Consensus       420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-----------------------------------  464 (1045)
T 1k32_A          420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-----------------------------------  464 (1045)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-----------------------------------
T ss_pred             CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-----------------------------------
Confidence            67889999999999999887654          899999987651                                   


Q ss_pred             eEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       373 ~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                       ..+..+...+..++|+|||++|++++.++
T Consensus       465 -~~l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          465 -FAATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             -EECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             -EEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence             11222334456689999999999988754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1.9e-22  Score=197.93  Aligned_cols=266  Identities=10%  Similarity=0.029  Sum_probs=188.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      ...|.+++|+|| +.++.+.++.|++||+.+++..  ...  .+...+..+.|+|++..++.. .+     +.|++|++.
T Consensus        81 ~~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~--~l~--~~~~~~~~~~~SpdG~~la~~-~~-----~~i~v~~~~  149 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVT--YLF--DTNEETASLDFSPVGDRVAYV-RN-----HNLYIARGG  149 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEE--EEE--CCTTCCTTCEECTTSSEEEEE-ET-----TEEEEEECB
T ss_pred             ccCceeEEECCC-CeEEEEECCEEEEEECCCCceE--Ecc--CCcccccCCcCCCCCCEEEEE-EC-----CeEEEEecC
Confidence            357999999999 7777777778999999877543  222  244567778999999877775 45     899999999


Q ss_pred             C-----CceeEEEe-cCCc--------------eeEEEEecCceEEE-e--c----------------------------
Q 015650          165 Q-----SRCIGELS-FRSE--------------VRSVKLRRDRIIVV-L--E----------------------------  193 (403)
Q Consensus       165 ~-----~~~~~~~~-~~~~--------------i~~~~~~~~~~~~~-~--d----------------------------  193 (403)
                      +     ++...... +...              +.++.|+|||++++ .  |                            
T Consensus       150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence            8     77665444 2222              48999999999887 2  2                            


Q ss_pred             -----CeEEEEEcCCceeeeEee--ccCCCceeEEEeeCCCeEEEEeeC--CccCeEEEEEccCC-ceeEEe--ecCC--
Q 015650          194 -----QKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASK-RTKFIM--AHDS--  259 (403)
Q Consensus       194 -----~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g--~~d~~i~v~d~~~~-~~~~~~--~~~~--  259 (403)
                           ..|++||+.+++......  .+...+..++|+|+++.++++...  .....|++||..++ ....+.  .+..  
T Consensus       230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence                 479999999887654432  344556789999999876655421  11248999999987 555443  2222  


Q ss_pred             -ceEEEEEcC--CCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCCcccEEE-EEeCCCCCEEEEEeC-CC----cEEE
Q 015650          260 -RIACFALTQ--DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYS-LAFSSNAQWLAVSSD-KG----TVHV  329 (403)
Q Consensus       260 -~i~~~~~sp--~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~-l~~s~d~~~l~s~~~-dg----~v~i  329 (403)
                       .+.+++|+|  ||++|++++.++. ++||++. +++.+..+..  +...+.. ++|+|||+.|+.++. ++    .|+.
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC  386 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred             CccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence             246789999  9999999999998 9999876 6777777764  4456776 799999998876654 44    4555


Q ss_pred             EEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650          330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                      ||+.+++. .                                   .+. +...+..++|||||++|+.++.+
T Consensus       387 ~d~~~~~~-~-----------------------------------~l~-~~~~~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          387 IDIKGGKT-K-----------------------------------DLT-PESGMHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             EETTCCCC-E-----------------------------------ESC-CSSSEEEEEECTTSSEEEEEEEC
T ss_pred             EEcCCCCc-e-----------------------------------ecc-CCCceEEEEECCCCCEEEEEecC
Confidence            55554431 0                                   011 23457779999999999877543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=4.6e-22  Score=177.03  Aligned_cols=236  Identities=9%  Similarity=0.008  Sum_probs=178.9

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CcEEEEEcCCCeeEEEEecccC---cceeEEEEeeeCCeEEEeeCC------------C
Q 015650           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERG---GGIGVVEMLFRCNILALVGGG------------P  149 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~-~~-~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~s~~------------~  149 (403)
                      .+..++|+|+|++++++ .. +.|.+||+.+++......+. .   +...+..+.|++++..++.+.            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS-TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC-BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC-CcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence            36789999999876544 43 45999999887765333332 1   122456788999885555543            3


Q ss_pred             CCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      +     +.|.+||+.+++.+..+.....+..++|+|++.+++ .++.|++||+.+++.+..+...... ..+.++|++..
T Consensus       114 ~-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~  187 (337)
T 1pby_B          114 P-----TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLA  187 (337)
T ss_dssp             C-----CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCC
T ss_pred             C-----ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccE
Confidence            4     899999999998888887667788999999998655 7899999999999888777544311 23367888776


Q ss_pred             EEEEeeCCccC-----------------------eEEEEEccCCceeE--EeecCCceEEEEEcCCCCEEEEEeCCCcEE
Q 015650          229 LVLVCPGLQKG-----------------------QVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (403)
Q Consensus       229 ~~~~~~g~~d~-----------------------~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i  283 (403)
                      +++..  ..++                       .|.+||+.+++...  +..+...+.+++|+|+|++|+++  ++. |
T Consensus       188 l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v  262 (337)
T 1pby_B          188 VWNQH--ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-L  262 (337)
T ss_dssp             CCCCC--TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-E
T ss_pred             Eeeec--cCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-E
Confidence            54332  2222                       47899998876543  34566678899999999999888  677 9


Q ss_pred             EEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ++||+.+++.+..+..   ...+.+++|+|||++|++++.++.|++||+.+++.
T Consensus       263 ~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          263 ESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             EEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence            9999999998888874   34678999999999999999999999999998874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=2.5e-22  Score=197.58  Aligned_cols=240  Identities=7%  Similarity=-0.020  Sum_probs=167.2

Q ss_pred             CeEEEEEcCCCCEEEEEcC----------CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           87 TLLHISFNQDHGCFAAGTD----------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~----------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      .|.+++|+|||++|+++.+          ..+.+||+++++........ ++...+..+.|+|++..++.++.      +
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~~SPdG~~la~~~~------~  134 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKLQYAGWGPKGQQLIFIFE------N  134 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCCSBCCBCSSTTCEEEEET------T
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-cccccccccEECCCCCEEEEEEC------C
Confidence            4899999999999998864          34889999887653212221 34445788999999987777664      6


Q ss_pred             eEEEEECCCCceeEEEe-cCCce------------------eEEEEecCceEEE---ecC--------------------
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEV------------------RSVKLRRDRIIVV---LEQ--------------------  194 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i------------------~~~~~~~~~~~~~---~d~--------------------  194 (403)
                      .|++||+.+++...... +...+                  .+++|+|||+.++   .++                    
T Consensus       135 ~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (723)
T 1xfd_A          135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (723)
T ss_dssp             EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence            89999999988766555 33333                  7899999998877   232                    


Q ss_pred             --------------eEEEEEcCCceeeeEeecc------CCCceeEEEeeCCCeEEEEee-CCccCeEEEEEccCCceeE
Q 015650          195 --------------KIFVYNFADLKLLHQIETI------ANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKRTKF  253 (403)
Q Consensus       195 --------------~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~v~d~~~~~~~~  253 (403)
                                    .|++||+.+++....+..+      ...+..++|+|+++.++.... +..+..|++||+.+++...
T Consensus       215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             eccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence                          7999999888765555543      345677999999874433321 2245689999998877554


Q ss_pred             E-e-ecCCceE----EEEEcCCCCEEEE--EeCCC------cEEEEEE-cCCCc--EEEEEecCCCcccEEE-EEeCCCC
Q 015650          254 I-M-AHDSRIA----CFALTQDGQLLAT--SSTKG------TLVRIFN-TLDGT--LLQEVRRGADRAEIYS-LAFSSNA  315 (403)
Q Consensus       254 ~-~-~~~~~i~----~~~~sp~g~~l~s--~~~dg------~~i~iwd-~~~~~--~~~~~~~~~~~~~v~~-l~~s~d~  315 (403)
                      + . .+...+.    .++|+|||+.|+.  +..++      . |++|| ...++  +...+..  +...+.. ++|+|||
T Consensus       295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg  371 (723)
T 1xfd_A          295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH-ITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKG  371 (723)
T ss_dssp             EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE-EEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTT
T ss_pred             EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE-EEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCC
Confidence            3 2 2344443    7899999997775  44566      4 77777 34444  1444442  2234544 6999999


Q ss_pred             CEEEEEeCC---CcEEEEEeecCC
Q 015650          316 QWLAVSSDK---GTVHVFNLKVNS  336 (403)
Q Consensus       316 ~~l~s~~~d---g~v~iwd~~~~~  336 (403)
                      +.|+..+.+   +.++||+++...
T Consensus       372 ~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          372 NKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             TEEEEEESSSCTTCCEEEEECSST
T ss_pred             CEEEEEEcCCCCcceEEEEEeCCC
Confidence            999866654   789999998654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=4.8e-22  Score=180.74  Aligned_cols=276  Identities=12%  Similarity=-0.007  Sum_probs=185.6

Q ss_pred             cccCCCCCCeEE-----EEEcCCCCEEEEEcC-Cc---EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650           79 STSSSPPPTLLH-----ISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (403)
Q Consensus        79 ~~~~~~~~~i~~-----i~~s~d~~~l~~~~~-~~---i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~  149 (403)
                      ..+..|......     .+|+|||++|+++++ ++   |.+|++.+++..  .... ++...+....|++++..|+....
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~-~~~~~~~~~~~spdg~~l~~~~~  100 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTE-GRGDNTFGGFLSPDDDALFYVKD  100 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--ECCC-SSCBCSSSCEECTTSSEEEEEET
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--Eeee-CCCCCccceEEcCCCCEEEEEeC
Confidence            344455555554     789999999988874 44   788888776544  3332 44444445679999988877776


Q ss_pred             CCCCCCceEEEEECCCCceeEEEe-cCCceeEEE--EecCceEEEe-------------------------cCeEEEEEc
Q 015650          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVK--LRRDRIIVVL-------------------------EQKIFVYNF  201 (403)
Q Consensus       150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~--~~~~~~~~~~-------------------------d~~i~i~d~  201 (403)
                      +     +.|++||+.+++....+. +...+....  +++++.+++.                         +..|++||+
T Consensus       101 ~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  175 (388)
T 3pe7_A          101 G-----RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL  175 (388)
T ss_dssp             T-----TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred             C-----CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence            6     899999999998777666 444443333  4889888761                         257999999


Q ss_pred             CCceeeeEeeccCCCceeEEEee-CCCeEEEEeeCCc---cCeEEEEEccCCceeEEeecC--CceEEEEEcCCCCEEEE
Q 015650          202 ADLKLLHQIETIANPKGLCAVSQ-GVGSLVLVCPGLQ---KGQVRVEHYASKRTKFIMAHD--SRIACFALTQDGQLLAT  275 (403)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~---d~~i~v~d~~~~~~~~~~~~~--~~i~~~~~sp~g~~l~s  275 (403)
                      .+++... +..+...+..+.|+| +++.++++..+..   ...|.++|..++....+..+.  ..+..++|+|||+.|+.
T Consensus       176 ~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~  254 (388)
T 3pe7_A          176 KTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVY  254 (388)
T ss_dssp             TTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred             CCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEE
Confidence            9886544 434566678899999 8877665543211   347888888887776666555  35788999999998866


Q ss_pred             EeCC-----CcEEEEEEcCCCcEEEEEecCCCccc---EEEEEeCCCCCEEEEE---------eCCCcEEEEEeecCCCC
Q 015650          276 SSTK-----GTLVRIFNTLDGTLLQEVRRGADRAE---IYSLAFSSNAQWLAVS---------SDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       276 ~~~d-----g~~i~iwd~~~~~~~~~~~~~~~~~~---v~~l~~s~d~~~l~s~---------~~dg~v~iwd~~~~~~~  338 (403)
                      .+.+     .. |++||+.+++.........+...   ...+.|+|||+.|+..         ..+..|++||+.+++. 
T Consensus       255 ~~~~~~~~~~~-l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-  332 (388)
T 3pe7_A          255 VSYLKGSPDRF-IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-  332 (388)
T ss_dssp             EEEETTCCCEE-EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-
T ss_pred             EecCCCCCcce-EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-
Confidence            4432     24 99999998875433221111000   1123799999988754         4566899999988662 


Q ss_pred             CCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC-----------CceEEEeccCCCEEEEEcc
Q 015650          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-----------SPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~fs~d~~~l~~~~~  400 (403)
                                                         .++..+..           .+..++|+|||++|+.++.
T Consensus       333 -----------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          333 -----------------------------------HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             -----------------------------------EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             -----------------------------------EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence                                               12333333           4677899999999987764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=1.5e-20  Score=168.19  Aligned_cols=254  Identities=11%  Similarity=0.075  Sum_probs=167.7

Q ss_pred             CCcEEEEEcCC--CeeEEEEecccCcceeEEEEeeeCCeEEEeeCC--CCCCCCCceEEEEECCCCc--eeEEEe-cCCc
Q 015650          105 DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGG--PDPQYPLNKVMIWDDHQSR--CIGELS-FRSE  177 (403)
Q Consensus       105 ~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~--~d~~~~~~~i~iwd~~~~~--~~~~~~-~~~~  177 (403)
                      +++|.+|.++.  ++.......  .+......++|++++.++++..  .+     +.|++|++.+++  .+..+. +...
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~--~~~~~p~~~a~spdg~l~~~~~~~~~-----~~v~~~~~~~g~~~~~~~~~~~~~~   87 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLL--AATQNPTYLALSAKDCLYSVDKEDDE-----GGIAAWQIDGQTAHKLNTVVAPGTP   87 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEE--EECSCCCCEEECTTCEEEEEEEETTE-----EEEEEEEEETTEEEEEEEEEEESCC
T ss_pred             CCCEEEEEEcCCCCeEEEeeee--eccCCcceEEEccCCeEEEEEecCCC-----ceEEEEEecCCcEEEeeeeecCCCC
Confidence            34588888764  333322223  2445567789999987444432  25     899999997765  334433 6778


Q ss_pred             eeEEEEecCceEEE----ecCeEEEEEcCC-c--eeeeEeecc---------CCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650          178 VRSVKLRRDRIIVV----LEQKIFVYNFAD-L--KLLHQIETI---------ANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (403)
Q Consensus       178 i~~~~~~~~~~~~~----~d~~i~i~d~~~-~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (403)
                      +..++|+||+.+++    .++.|.+|++.. +  +.+..+...         ...+..++++|+++ ++++  +..++.|
T Consensus        88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~--~~~~~~v  164 (347)
T 3hfq_A           88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI--DLGSDKV  164 (347)
T ss_dssp             CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE--ETTTTEE
T ss_pred             CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE--eCCCCEE
Confidence            89999999998666    258999999963 3  233333221         12356789999988 5443  3457899


Q ss_pred             EEEEcc-CCceeEE---ee-cCCceEEEEEcCCCCEEEEE-eCCCcEEEEEEcCC--CcE--EEEEecCCC----cccEE
Q 015650          242 RVEHYA-SKRTKFI---MA-HDSRIACFALTQDGQLLATS-STKGTLVRIFNTLD--GTL--LQEVRRGAD----RAEIY  307 (403)
Q Consensus       242 ~v~d~~-~~~~~~~---~~-~~~~i~~~~~sp~g~~l~s~-~~dg~~i~iwd~~~--~~~--~~~~~~~~~----~~~v~  307 (403)
                      .+|++. .+.+...   .. ....+..++|+|||++|+++ ..++. |++|++..  ++.  +..+.....    ...+.
T Consensus       165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  243 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA  243 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred             EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence            999998 4544322   22 23367889999999977665 45667 99999874  543  223332111    13588


Q ss_pred             EEEeCCCCCEEE-EEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEE
Q 015650          308 SLAFSSNAQWLA-VSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (403)
Q Consensus       308 ~l~~s~d~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (403)
                      .++|+|||++|+ +...++.|.+|+++....                                ...+..+..+...+..+
T Consensus       244 ~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~--------------------------------~~~~~~~~~~~~~~~~~  291 (347)
T 3hfq_A          244 AIRLSHDGHFLYVSNRGYNTLAVFAVTADGH--------------------------------LTLIQQISTEGDFPRDF  291 (347)
T ss_dssp             EEEECTTSCEEEEEEETTTEEEEEEECGGGC--------------------------------EEEEEEEECSSSCCCEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEECCCCc--------------------------------EEEeEEEecCCCCcCeE
Confidence            999999999875 555789999999974321                                00122233444568899


Q ss_pred             EeccCCCEEEEEccC
Q 015650          387 AFGHQKNTVVILGMD  401 (403)
Q Consensus       387 ~fs~d~~~l~~~~~d  401 (403)
                      +|+|||++|++++.+
T Consensus       292 ~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          292 DLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EECTTSSEEEEEETT
T ss_pred             EECCCCCEEEEEEcC
Confidence            999999999998765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=7.9e-22  Score=171.89  Aligned_cols=239  Identities=7%  Similarity=-0.095  Sum_probs=174.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      .+..|...|.+++|+|+|++|+++.++.|++|++.+ ++..  ......+...+..+.|++++..++.+..+.. ....|
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l  112 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPDGALYAISDKVEF-GKSAI  112 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTTSSEEEEEECTTT-SSCEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce--EeccccccccccceEECCCCCEEEEEEeCCC-CcceE
Confidence            345578899999999999999999888899999987 6554  3333223467788999999877776652100 01455


Q ss_pred             EEEECCCCceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      .+|+..+++ ...+.....+..++|+|++..++    .++.+++|++.. ......+..+...+..++|+|+++.++++.
T Consensus       113 ~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          113 YLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence            555555554 44455445689999999998766    378888888532 233455556677788999999988655443


Q ss_pred             eCCccCeEEEEEcc--CCceeEEeecCCceEEEEEcCCCCEEEEEeCC-----------CcEEEEEEcCCCcEEEEEecC
Q 015650          234 PGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDGQLLATSSTK-----------GTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       234 ~g~~d~~i~v~d~~--~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-----------g~~i~iwd~~~~~~~~~~~~~  300 (403)
                        ..++.+++|+++  .+....+..|...+.+++|+|+|++|++++.+           +. |++||+.+++........
T Consensus       192 --~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          192 --SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR-VQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             --CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE-EEEEETTSCSCEEEEEEE
T ss_pred             --cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE-EEEEecCCCCceeeeccC
Confidence              357888888875  46667777788889999999999999888765           45 999999888764433321


Q ss_pred             CCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          301 ADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       301 ~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      .|...+..++|+||+++|++++.+.
T Consensus       269 ~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          269 GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCcccccceECCCCCEEEEEEecc
Confidence            2567899999999999998887554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=2.5e-21  Score=197.65  Aligned_cols=267  Identities=12%  Similarity=0.043  Sum_probs=202.8

Q ss_pred             CCCCeEEEEEc-CCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce-eEEEEeeeCCeEEEeeCCCCCCCCCceEE-E
Q 015650           84 PPPTLLHISFN-QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVM-I  160 (403)
Q Consensus        84 ~~~~i~~i~~s-~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~s~~~d~~~~~~~i~-i  160 (403)
                      |...|.+++|+ |||++|+++.++.|.+|++......   .+. .+.. .+..+.|+ ++..++.++.+     +.+. +
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~---~~~-~~~~~~~~~~~~s-dg~~l~~~s~~-----~~l~~~  363 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---KVP-EPLRIRYVRRGGD-TKVAFIHGTRE-----GDFLGI  363 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE---ECS-CCSCEEEEEECSS-SEEEEEEEETT-----EEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE---Ecc-CCCcceEEeeeEc-CCCeEEEEECC-----CceEEE
Confidence            34478999999 9999999998777999998766533   243 3555 88999999 98887777666     8898 9


Q ss_pred             EECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC--
Q 015650          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--  235 (403)
Q Consensus       161 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--  235 (403)
                      |++.+++......+...+..++|+|||+.++   .++.|++||+.+++....+..+...+..++|+|+++.++++...  
T Consensus       364 ~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~  443 (1045)
T 1k32_A          364 YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH  443 (1045)
T ss_dssp             EETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             EECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcc
Confidence            9988776543334667899999999999887   37799999999998887777788888999999999866554321  


Q ss_pred             -----CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE-----------------
Q 015650          236 -----LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-----------------  293 (403)
Q Consensus       236 -----~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-----------------  293 (403)
                           ..++.|++||+.++....+..|...+..++|+|||++|++++.++. ..+|+......                 
T Consensus       444 ~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (1045)
T 1k32_A          444 GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGS  522 (1045)
T ss_dssp             STTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             ccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccC-CcCcchhccccccccCceeEEEEeCCCC
Confidence                 1236899999999887778888888999999999999999998877 77776533221                 


Q ss_pred             --------------------------EEEEecCCCcccEEEEEeCCCCCEEEE-----------E--eCCCcEEEEEeec
Q 015650          294 --------------------------LQEVRRGADRAEIYSLAFSSNAQWLAV-----------S--SDKGTVHVFNLKV  334 (403)
Q Consensus       294 --------------------------~~~~~~~~~~~~v~~l~~s~d~~~l~s-----------~--~~dg~v~iwd~~~  334 (403)
                                                +..+.  .+...+..++++|||+++++           .  .....|++||+.+
T Consensus       523 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~--~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~  600 (1045)
T 1k32_A          523 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN--VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT  600 (1045)
T ss_dssp             CCGGGCCCGGGSCCCCCCCCTTGGGGCEECS--CCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT
T ss_pred             CCccccCcCccccccccccccCHhHceEEcC--CCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCC
Confidence                                      11111  14467889999999988875           1  2344677777777


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      ++.                                    ..+.   ..+..++|||||++|++++.|+
T Consensus       601 ~~~------------------------------------~~l~---~~v~~~~~S~DG~~l~~~~~~~  629 (1045)
T 1k32_A          601 RKV------------------------------------TEVK---NNLTDLRLSADRKTVMVRKDDG  629 (1045)
T ss_dssp             CCE------------------------------------EEEE---EEEEEEEECTTSCEEEEEETTS
T ss_pred             CcE------------------------------------EEee---cCcceEEECCCCCEEEEEcCCc
Confidence            652                                    1111   3467789999999999988763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=8.8e-21  Score=169.77  Aligned_cols=241  Identities=12%  Similarity=0.146  Sum_probs=164.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC-CCCCCCCceEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVM  159 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~i~  159 (403)
                      +...+..++|+|||++++++.   ++.|++|++++++......+. .+...+..++|++++..++.++ .+     +.|.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~  111 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHK-----GTAE  111 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTT-----TEEE
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCC-----CEEE
Confidence            445667899999999544444   245999999776654434433 3555677889999987555544 55     8999


Q ss_pred             EEECCC-Cc--eeEEEecC----------CceeEEEEecCceEEEe---cCeEEEEEcC-Cceeee--Eeecc-CCCcee
Q 015650          160 IWDDHQ-SR--CIGELSFR----------SEVRSVKLRRDRIIVVL---EQKIFVYNFA-DLKLLH--QIETI-ANPKGL  219 (403)
Q Consensus       160 iwd~~~-~~--~~~~~~~~----------~~i~~~~~~~~~~~~~~---d~~i~i~d~~-~~~~~~--~~~~~-~~~~~~  219 (403)
                      +|++.. +.  .+..+.+.          ..+.+++|+|++++++.   ++.|++|++. +++...  .+... ......
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            999963 32  33333322          23788999999995553   6789999998 454322  22222 224567


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeE---EeecC------CceEEEEEcCCCCEEE-EEeCCCcEEEEEE
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKF---IMAHD------SRIACFALTQDGQLLA-TSSTKGTLVRIFN  287 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~---~~~~~------~~i~~~~~sp~g~~l~-s~~~dg~~i~iwd  287 (403)
                      ++|+|+++.++++.  ..++.|.+|+++.  +....   +....      ..+..++|+|||++|+ +...++. |.+||
T Consensus       192 ~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~  268 (347)
T 3hfq_A          192 LVFSPDGQYAFLAG--ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFA  268 (347)
T ss_dssp             EEECTTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEE
T ss_pred             EEECCCCCEEEEEe--CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEE
Confidence            89999998666553  4678999999885  44322   22222      3588999999999885 4555788 99999


Q ss_pred             cCC-C--cEEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCcEEEEEeecC
Q 015650          288 TLD-G--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKVN  335 (403)
Q Consensus       288 ~~~-~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~-dg~v~iwd~~~~  335 (403)
                      +.. +  +.+..+..  +...+..++|+|||++|++++. ++.|.+|+++..
T Consensus       269 ~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          269 VTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT  318 (347)
T ss_dssp             ECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence            973 2  44445543  3456889999999999888875 589999977643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=9e-20  Score=164.12  Aligned_cols=239  Identities=13%  Similarity=0.091  Sum_probs=162.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-----CcEEEEEcCC--CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           84 PPPTLLHISFNQDHGCFAAGTD-----HGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~-----~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      +...+..++|+|||++|++++.     +.|.+|+++.  ++........ .+......+.+ ....++++...+     +
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~-~~~~~p~~~~~-dg~~l~~~~~~~-----~  120 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK-TMGADPCYLTT-NGKNIVTANYSG-----G  120 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE-CSSSCEEEEEE-CSSEEEEEETTT-----T
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec-cCCCCcEEEEE-CCCEEEEEECCC-----C
Confidence            5667788999999999888875     3599999876  3333323332 23445566666 333344444455     8


Q ss_pred             eEEEEECCCCceeEE----Eec-----------CCceeEEEEecCceEEE-e---cCeEEEEEcCCcee------e----
Q 015650          157 KVMIWDDHQSRCIGE----LSF-----------RSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKL------L----  207 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~----~~~-----------~~~i~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~------~----  207 (403)
                      .|.+|++.....+..    +.+           ...+.+++|+|++++++ .   ++.|++|++.....      +    
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            999999975433221    111           12357899999998655 2   67999999875331      1    


Q ss_pred             --eEe-eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe------ecCCceEEEEEcCCCCEEEEEeC
Q 015650          208 --HQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM------AHDSRIACFALTQDGQLLATSST  278 (403)
Q Consensus       208 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~------~~~~~i~~~~~sp~g~~l~s~~~  278 (403)
                        ..+ .........++|+|+++.++++.  ..++.|.+|++.++....+.      .+......++|+|||++|+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~--~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLIN--EIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEE--TTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEc--CCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence              111 12234456799999998666553  45789999999876543322      22345679999999999977666


Q ss_pred             C--CcEEEEEEcC--CCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecC
Q 015650          279 K--GTLVRIFNTL--DGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       279 d--g~~i~iwd~~--~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~  335 (403)
                      +  +. |.+|++.  +++  .+..+..   ...+.+++|+|||++|++++ .++.|.+|+++..
T Consensus       279 ~~~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          279 LKADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             SSSCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence            5  77 9999985  455  3434442   34678999999999988887 6789999887643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=5.2e-20  Score=164.91  Aligned_cols=205  Identities=11%  Similarity=0.072  Sum_probs=157.5

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCC--CCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCC
Q 015650          130 IGVVEMLFRCNILALVGGGPDP--QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD  203 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~--~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~  203 (403)
                      ..+..+.+++++..++.++.+.  ....+.|.+||..+++.+..+.....+..++|++++..++    .++.|.+||+.+
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  120 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT  120 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence            4567888888764433332110  0001789999999999999888767788999999987544    268999999999


Q ss_pred             ceeeeEeeccCCC---------ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee-cCCceEEEEEcCCCCEE
Q 015650          204 LKLLHQIETIANP---------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLL  273 (403)
Q Consensus       204 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~i~~~~~sp~g~~l  273 (403)
                      ++.+..+..+...         ...++++++++.++++..+ .++.|.+||..+++...... +...+.+++|+|+|++|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence            9988887654322         4678999999876665423 57899999999876554433 66668899999999999


Q ss_pred             EEEeCCCcEEEEEEcCCCcEEEEEecCC--CcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650          274 ATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       274 ~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                      ++++.++. |.+||+.+++.+..+....  +...+.+++|+|+|++|++++ .++.|.+||+.+++
T Consensus       200 ~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  264 (353)
T 3vgz_A          200 YTTNADGE-LITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN  264 (353)
T ss_dssp             EEECTTSE-EEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred             EEEcCCCe-EEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            99999998 9999999999888876421  244688999999999877666 45999999998877

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=3.3e-20  Score=165.88  Aligned_cols=228  Identities=10%  Similarity=0.040  Sum_probs=168.0

Q ss_pred             EEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCCCCceEEEEECCCCc
Q 015650           90 HISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      .+++++++++++++. ++.|++||..+++...  .+..+....+..+.+++++. ++++...+     +.|.+||+.+++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYK--SCVMPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCK   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEE--EEECSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEE--EEecCCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCc
Confidence            456788888888887 5559999998877653  33312222456788888874 44555556     899999999998


Q ss_pred             eeEEEecC-------CceeEEEEecCceEEE-e--c------------CeEEEEEcCCceee---eEeeccCCCceeEEE
Q 015650          168 CIGELSFR-------SEVRSVKLRRDRIIVV-L--E------------QKIFVYNFADLKLL---HQIETIANPKGLCAV  222 (403)
Q Consensus       168 ~~~~~~~~-------~~i~~~~~~~~~~~~~-~--d------------~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~  222 (403)
                      .+..+...       ..+..++|+||+++++ .  +            +.|++||+.+++..   ..+.. ...+..+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~  155 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRA  155 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEE
T ss_pred             EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeE
Confidence            88777632       2378999999998777 2  3            89999999885433   33332 335778889


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccCCceeE-Eeec--------------------------------------------
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAH--------------------------------------------  257 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~-~~~~--------------------------------------------  257 (403)
                      +++++ +++ . +   +.|.+||..+++... +..+                                            
T Consensus       156 s~dg~-l~~-~-~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  229 (349)
T 1jmx_B          156 ADDGS-LYV-A-G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  229 (349)
T ss_dssp             CTTSC-EEE-E-S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             CCCCc-EEE-c-c---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence            99988 544 2 2   349999987755332 2211                                            


Q ss_pred             ------------------------CCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          258 ------------------------DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       258 ------------------------~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                                              ...+..++|+| +|++|+++  ++. |.+||+.+++.+..+..   ...+.+++|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~---~~~~~~~~~s  303 (349)
T 1jmx_B          230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANL---DHTYYCVAFD  303 (349)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEEC---SSCCCEEEEC
T ss_pred             ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcC---CCCccceEEC
Confidence                                    11345778889 99999888  777 99999999998888874   2457899999


Q ss_pred             CCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          313 SNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |||++|++++.++.|++||+++++.
T Consensus       304 ~dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          304 KKGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             SSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             CCCCEEEEecCCCeEEEEeccccce
Confidence            9999998888899999999988774

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=1.8e-19  Score=161.04  Aligned_cols=221  Identities=10%  Similarity=0.037  Sum_probs=162.3

Q ss_pred             EeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCC--ceeEEEEecCceEEE----ecCeEEEEEcCCceeee
Q 015650          135 MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH  208 (403)
Q Consensus       135 ~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~  208 (403)
                      +++.+++.++++++.+     +.|++||+.+++.+..+....  .+..++|+|++..++    .++.|++||+.+++.+.
T Consensus         5 ~~~~~~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccccCCCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            4567778888888877     999999999999988888544  688999999997544    37899999999998877


Q ss_pred             EeeccC------CCceeEEEeeCCCeEEEEeeC---------CccCeEEEEEccCCce---eEEeecCCceEEEEEcCCC
Q 015650          209 QIETIA------NPKGLCAVSQGVGSLVLVCPG---------LQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDG  270 (403)
Q Consensus       209 ~~~~~~------~~~~~~~~~~~~~~~~~~~~g---------~~d~~i~v~d~~~~~~---~~~~~~~~~i~~~~~sp~g  270 (403)
                      .+....      ..+..++++|+++.++++...         ..++.|.+||+.+++.   .....+...+.+++|+|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  159 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence            775432      226789999999876655311         0148999999987332   2223344568899999999


Q ss_pred             CEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-------------------------------------------------
Q 015650          271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-------------------------------------------------  301 (403)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-------------------------------------------------  301 (403)
                      + ++++  ++. |++||+.+++.+..+..+.                                                 
T Consensus       160 ~-l~~~--~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  235 (349)
T 1jmx_B          160 S-LYVA--GPD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  235 (349)
T ss_dssp             C-EEEE--SSS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             c-EEEc--cCc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence            9 5554  345 9999999998877665321                                                 


Q ss_pred             -----------------CcccEEEEEeCC-CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccc
Q 015650          302 -----------------DRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (403)
Q Consensus       302 -----------------~~~~v~~l~~s~-d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (403)
                                       +...+..++|+| |+++|+++  ++.|++||+.+++.                          
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~--------------------------  287 (349)
T 1jmx_B          236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL--------------------------  287 (349)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE--------------------------
T ss_pred             EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE--------------------------
Confidence                             001345678889 99998888  88999999988762                          


Q ss_pred             cceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                               ...+. ....+..++|+|||++|++++.+|
T Consensus       288 ---------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~  316 (349)
T 1jmx_B          288 ---------IKAAN-LDHTYYCVAFDKKGDKLYLGGTFN  316 (349)
T ss_dssp             ---------EEEEE-CSSCCCEEEECSSSSCEEEESBSS
T ss_pred             ---------EEEEc-CCCCccceEECCCCCEEEEecCCC
Confidence                     11122 234577899999999999887765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=8.9e-19  Score=157.61  Aligned_cols=265  Identities=13%  Similarity=0.082  Sum_probs=167.6

Q ss_pred             CCCEEEEEc-----CCcEEEEEcCC--CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC--C
Q 015650           96 DHGCFAAGT-----DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--S  166 (403)
Q Consensus        96 d~~~l~~~~-----~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~--~  166 (403)
                      ...++.+|+     +++|.+|.++.  ++......+   +......++|++++..+++++.+. ...+.|.+|++..  +
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKG   87 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTT
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCC
Confidence            344555553     34599998754  333322222   444556688899887665554420 0117999998865  4


Q ss_pred             ce--eEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEe---ecc-----------CCCceeEEEeeC
Q 015650          167 RC--IGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI---ETI-----------ANPKGLCAVSQG  225 (403)
Q Consensus       167 ~~--~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~---~~~-----------~~~~~~~~~~~~  225 (403)
                      +.  +.... +......+++  ++.+++    .++.|.+|++.....+..+   ..+           ...+..++|+|+
T Consensus        88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd  165 (361)
T 3scy_A           88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD  165 (361)
T ss_dssp             EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred             cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence            33  23333 4456777777  665544    3789999999754322211   111           112356899999


Q ss_pred             CCeEEEEeeCCccCeEEEEEccCCc-------e-------eEEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCC
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYASKR-------T-------KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLD  290 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~~~-------~-------~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~  290 (403)
                      ++.++++.  ..++.|.+|++....       +       .....+...+..++|+|||++|++++ .++. |.+||+.+
T Consensus       166 g~~l~~~~--~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~  242 (361)
T 3scy_A          166 GKYLLADD--LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYAD  242 (361)
T ss_dssp             SSEEEEEE--TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEET
T ss_pred             CCEEEEEe--CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecC
Confidence            98766553  457899999987532       2       11223455678999999999888777 5777 99999987


Q ss_pred             CcE--EEEEecC-CCcccEEEEEeCCCCCEEEEEeC--CCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccc
Q 015650          291 GTL--LQEVRRG-ADRAEIYSLAFSSNAQWLAVSSD--KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (403)
Q Consensus       291 ~~~--~~~~~~~-~~~~~v~~l~~s~d~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (403)
                      ++.  +..+... .+......++|+|||++|+++..  ++.|.+|+++......                          
T Consensus       243 g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~--------------------------  296 (361)
T 3scy_A          243 GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL--------------------------  296 (361)
T ss_dssp             TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE--------------------------
T ss_pred             CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE--------------------------
Confidence            754  3333321 12245789999999999877665  4899999997432100                          


Q ss_pred             eeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                           ..+..+.. ...+..++|+|||++|++++.+
T Consensus       297 -----~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          297 -----TKVGYQLT-GIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             -----EEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred             -----EEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence                 00122222 4567889999999999998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=2.6e-19  Score=161.38  Aligned_cols=241  Identities=11%  Similarity=0.101  Sum_probs=165.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcC-CCeeEEEEecccCcceeEEEEeeeCCeE--EEeeCC-------------
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGG-------------  148 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~-------------  148 (403)
                      ...+..++|+|||++|++++.+.|.+|+++ +++........ .+. ....+.+++++.  ++++++             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~-~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-IGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE-CCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEee-cCC-CCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            346778999999998888775599999997 55543222221 011 233478899987  454543             


Q ss_pred             CCCCCCCceEEEEECC-CCceeEEEe-----cCCceeEEEEecCceEEE-e---cCeEEEEEcC-Cceee--eEeec--c
Q 015650          149 PDPQYPLNKVMIWDDH-QSRCIGELS-----FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFA-DLKLL--HQIET--I  213 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~-~~~~~~~~~-----~~~~i~~~~~~~~~~~~~-~---d~~i~i~d~~-~~~~~--~~~~~--~  213 (403)
                      .+     +.+.+|++. +++....+.     +...+.+++|+|||++++ .   ++.|++||+. +++..  ..+..  +
T Consensus       117 ~~-----g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T 1jof_A          117 FA-----GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             SC-----CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             CC-----ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence            45     899999997 466554443     346789999999998666 3   5689999998 66543  23331  2


Q ss_pred             CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc--CCcee----EEee-------cCC------ceEEEE-EcCCCCEE
Q 015650          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTK----FIMA-------HDS------RIACFA-LTQDGQLL  273 (403)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~--~~~~~----~~~~-------~~~------~i~~~~-~sp~g~~l  273 (403)
                      ......++|+|+++.++++.  ..++.|.+|+++  +++..    .+..       |..      .+..++ |+|||++|
T Consensus       192 g~~p~~~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCCEeEECCCCCEEEEEE--CCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence            45567899999998766553  457899999876  34332    1221       122      478999 99999998


Q ss_pred             EEEeCCC------cEEEEEEcC-CCcEEEEEe-cCCCcccEEEEEeCC---CCCEEEEEeC-CCcEEEEEeecC
Q 015650          274 ATSSTKG------TLVRIFNTL-DGTLLQEVR-RGADRAEIYSLAFSS---NAQWLAVSSD-KGTVHVFNLKVN  335 (403)
Q Consensus       274 ~s~~~dg------~~i~iwd~~-~~~~~~~~~-~~~~~~~v~~l~~s~---d~~~l~s~~~-dg~v~iwd~~~~  335 (403)
                      ++++.+.      . |.+|++. +++...... ...+...+..++|+|   ||++|++++. ++.|.+|+++..
T Consensus       270 ~v~~~~~~~~~~~~-i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          270 FASSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEECCCCCCCCCCe-EEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            8766432      7 9999996 666543211 111234566789999   8999999886 489999999865

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=2.4e-21  Score=190.44  Aligned_cols=237  Identities=9%  Similarity=-0.009  Sum_probs=163.8

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce---eEEEEeeeCCeEEEeeCCC---------CCCCCCce
Q 015650           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGP---------DPQYPLNK  157 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~s~~~---------d~~~~~~~  157 (403)
                      .++|+|||++++.+.++.|++|++.+++..  ..+. ++..   .+..+.|+||+..++.++.         +     +.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~--~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~-----~~   91 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSY--TILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT-----AT   91 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEE--EEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE-----EE
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEE--EEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecc-----eE
Confidence            578999998777776777999999887754  3333 2322   3789999999988776654         5     89


Q ss_pred             EEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEe-eccCC-----------------Cc
Q 015650          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIAN-----------------PK  217 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~-~~~~~-----------------~~  217 (403)
                      |++||+.+++.+........+..++|+|||+.++  .++.|++||+.+++..+.. .++..                 ..
T Consensus        92 i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           92 YYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             EEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             EEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            9999999987632122246688999999998887  6999999999887765432 12111                 11


Q ss_pred             eeEEEeeCCCeEEEEeeCC-------------------------------ccCeEEEEEccCCcee---E------Eeec
Q 015650          218 GLCAVSQGVGSLVLVCPGL-------------------------------QKGQVRVEHYASKRTK---F------IMAH  257 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~-------------------------------~d~~i~v~d~~~~~~~---~------~~~~  257 (403)
                      ..++|+||++.++++....                               ....|++||+.++...   .      +..|
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  251 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS  251 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence            4799999999766554110                               1127889999886541   2      2357


Q ss_pred             CCceEEEEEcCCCCEEEEEeCC----CcEEEEEE----cCCCcEEEEEe---cCCCcccEE-----EEEeCCCCCEEEE-
Q 015650          258 DSRIACFALTQDGQLLATSSTK----GTLVRIFN----TLDGTLLQEVR---RGADRAEIY-----SLAFSSNAQWLAV-  320 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~~~d----g~~i~iwd----~~~~~~~~~~~---~~~~~~~v~-----~l~~s~d~~~l~s-  320 (403)
                      ...+..++|+||++++++....    .. |++||    +.++++...+.   . .+...+.     .+.|+|||+.|+. 
T Consensus       252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~-l~~~d~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          252 DYYFSWLTWVTDERVCLQWLKRVQNVSV-LSICDFREDWQTWDCPKTQEHIEE-SRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             CEEEEEEEESSSSEEEEEEEESSTTEEE-EEEEEECSSSSSEECCGGGEEEEE-CSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             cceEEEeEEeCCCeEEEEEeccccCeEE-EEEEcccCCCCCCceEEEEecccc-cCCceEccccCCccEECCCCCeEEEE
Confidence            7789999999998877764432    24 88899    77776554442   1 1445565     7899999996554 


Q ss_pred             -EeCCCc--EEEEEeecCC
Q 015650          321 -SSDKGT--VHVFNLKVNS  336 (403)
Q Consensus       321 -~~~dg~--v~iwd~~~~~  336 (403)
                       ...+|.  |++|++.+++
T Consensus       330 ~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          330 FSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             EECTTSCEEEEEESSCSTT
T ss_pred             EEccCCceEEEEEECCCCc
Confidence             445664  5555655544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=3.5e-20  Score=177.69  Aligned_cols=194  Identities=10%  Similarity=-0.001  Sum_probs=144.9

Q ss_pred             cceeEEEEeeeCCeEEEeeCCC-CCCCCCceEEEEECCCCceeEEEecC-CceeEEEEecCceEEE-ec-----CeEEEE
Q 015650          128 GGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVV-LE-----QKIFVY  199 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~-~d-----~~i~i~  199 (403)
                      ....+..+.|++|+..++.++. +     |+++||++.+++..+...+. ..+..+.|+|| ++++ .+     ....+|
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~-----g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSE-----GSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEET-----TEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccC-----CceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence            3557999999999888887665 7     99999998666654444455 58999999999 6555 32     344554


Q ss_pred             EcCC---ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEE
Q 015650          200 NFAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS  276 (403)
Q Consensus       200 d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~  276 (403)
                      .+..   +... .+.. .......+++|+++.+++++ + .++.+.+||+.+++...+..+..  .+++|+|||++|+++
T Consensus        94 ~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s-~-~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~  167 (582)
T 3o4h_A           94 KVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTG-A-TEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             EEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEE-E-CSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEE
T ss_pred             EEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEe-c-CCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEE
Confidence            4432   2222 3322 23445779999999887775 3 33455599999988777765555  889999999999988


Q ss_pred             eCC----CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC--cEEEEEeecCCC
Q 015650          277 STK----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG--TVHVFNLKVNSG  337 (403)
Q Consensus       277 ~~d----g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg--~v~iwd~~~~~~  337 (403)
                      +.+    +. |++||+.+++.. .+..  +...+..++|||||++|+++..++  .|++||+++++.
T Consensus       168 ~~~~~~~~~-i~~~d~~~g~~~-~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~  230 (582)
T 3o4h_A          168 GFFGGGRVS-LFTSNLSSGGLR-VFDS--GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV  230 (582)
T ss_dssp             EEEETTEEE-EEEEETTTCCCE-EECC--SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred             EEcCCCCeE-EEEEcCCCCCce-Eeec--CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence            877    67 999999888875 4443  567899999999999999888888  899999988774

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.83  E-value=1.3e-19  Score=164.89  Aligned_cols=233  Identities=11%  Similarity=-0.013  Sum_probs=157.6

Q ss_pred             eEEEEEcCCCCEEEEEcCC----cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           88 LLHISFNQDHGCFAAGTDH----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      +..++|+|||++|+...+.    .|.+|++.+++..   .+..++......+.|++++..++....+     +.|++||+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~  109 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---QLTEGKGDNTFGGFISTDERAFFYVKNE-----LNLMKVDL  109 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---ECCCSSCBCTTTCEECTTSSEEEEEETT-----TEEEEEET
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---EeecCCCCccccceECCCCCEEEEEEcC-----CcEEEEEC
Confidence            6677999999998877532    3888888776543   2321222222236689998877776666     78999999


Q ss_pred             CCCceeEEEe-cCCceeE-------------------EEEecCceEEE--------ecCeEEEEEcCCceeeeEeeccCC
Q 015650          164 HQSRCIGELS-FRSEVRS-------------------VKLRRDRIIVV--------LEQKIFVYNFADLKLLHQIETIAN  215 (403)
Q Consensus       164 ~~~~~~~~~~-~~~~i~~-------------------~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~  215 (403)
                      .+++...... +......                   +.|+|++..++        .+..|++||+.+++..... .+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~  188 (396)
T 3c5m_A          110 ETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTA  188 (396)
T ss_dssp             TTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESS
T ss_pred             CCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCc
Confidence            9887665555 3322222                   24556665544        1347999999887765444 4556


Q ss_pred             CceeEEEee-CCCeEEEEeeCCcc----CeEEEEEccCCceeEEeec--CCceEEEEEcCCCCEEEEEeCC-----CcEE
Q 015650          216 PKGLCAVSQ-GVGSLVLVCPGLQK----GQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTK-----GTLV  283 (403)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~~g~~d----~~i~v~d~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~s~~~d-----g~~i  283 (403)
                      .+..+.|+| +++.++++..+ ..    ..|.+||+.++....+..+  ...+..++|+|||++|+.++.+     +. |
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-l  266 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV-I  266 (396)
T ss_dssp             CEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE-E
T ss_pred             ccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce-E
Confidence            678889999 66656555422 22    5788999887766555443  2357889999999988777654     45 9


Q ss_pred             EEEEcCCCcEEEEEecCCCcccEEEEEeCC-CCCEEEEEe----------------CCCcEEEEEeecCC
Q 015650          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSS----------------DKGTVHVFNLKVNS  336 (403)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~----------------~dg~v~iwd~~~~~  336 (403)
                      ++||+.+++.......   . ... +.|+| ||++|++++                .+..|++||+.+++
T Consensus       267 ~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          267 YKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             EEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            9999988876543332   1 233 89999 999888754                34789999998766

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=8e-18  Score=151.58  Aligned_cols=254  Identities=10%  Similarity=-0.004  Sum_probs=167.5

Q ss_pred             CcEEEEEcC--CCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC-CCceeEEEec--CCceeE
Q 015650          106 HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELSF--RSEVRS  180 (403)
Q Consensus       106 ~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~-~~~~~~~~~~--~~~i~~  180 (403)
                      ++|.+|+++  +++..............+..+++++++..+++++.      +.|.+|++. +++......+  ...+..
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~------~~v~~~~~~~~g~~~~~~~~~~~g~~~~   87 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEASHPIGGHPRA   87 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEEEEECCSSGGG
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc------ceEEEEEECCCCCEEEeeEeecCCCCcc
Confidence            458888764  34433222221123335677889999887776665      479999997 7776554442  234667


Q ss_pred             EEEecCceE--EE----------------ecCeEEEEEcC-CceeeeEeec----cCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          181 VKLRRDRII--VV----------------LEQKIFVYNFA-DLKLLHQIET----IANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       181 ~~~~~~~~~--~~----------------~d~~i~i~d~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      ++|+||+++  ++                .++++.+|++. +++....+..    +...+..++|+|+++.++++.  ..
T Consensus        88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~--~~  165 (365)
T 1jof_A           88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD--LT  165 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TT
T ss_pred             EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc--CC
Confidence            899999984  32                25689999997 4665444432    345677899999998655443  34


Q ss_pred             cCeEEEEEcc-CCceeE---Ee--ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcC--CCcEE---EEEecCC----
Q 015650          238 KGQVRVEHYA-SKRTKF---IM--AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTL--DGTLL---QEVRRGA----  301 (403)
Q Consensus       238 d~~i~v~d~~-~~~~~~---~~--~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~--~~~~~---~~~~~~~----  301 (403)
                      ++.|++||+. +++...   +.  .|...+..++|+|||++|++++. ++. |.+|++.  +++..   ..+....    
T Consensus       166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~  244 (365)
T 1jof_A          166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSFPLIPPGIP  244 (365)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred             CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence            6799999998 655432   22  23567899999999999988775 567 9999765  56543   2232110    


Q ss_pred             -Ccc------cEEEEE-eCCCCCEEEEEeCC-C-----cEEEEEeec-CCCCCCCCCCCCCCCCCcccccccccccccce
Q 015650          302 -DRA------EIYSLA-FSSNAQWLAVSSDK-G-----TVHVFNLKV-NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKY  366 (403)
Q Consensus       302 -~~~------~v~~l~-~s~d~~~l~s~~~d-g-----~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (403)
                       +..      .+..++ |+|||++|+++..+ +     .|.+|+++. ++. .                           
T Consensus       245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-~---------------------------  296 (365)
T 1jof_A          245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-E---------------------------  296 (365)
T ss_dssp             CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-E---------------------------
T ss_pred             CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-E---------------------------
Confidence             111      588999 99999998876533 2     899999973 331 0                           


Q ss_pred             eeeeeeeE-EEEEeCCCceEEEecc---CCCEEEEEccC
Q 015650          367 FSSEWSVA-QFRLVEGSPYIVAFGH---QKNTVVILGMD  401 (403)
Q Consensus       367 ~~~~~~~~-~~~~~~~~~~~~~fs~---d~~~l~~~~~d  401 (403)
                           .+. ....+...+..++|+|   ||++|++++.+
T Consensus       297 -----~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          297 -----KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             -----EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             -----EeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence                 000 1222334567789999   89999999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=5.3e-19  Score=162.54  Aligned_cols=196  Identities=11%  Similarity=0.102  Sum_probs=144.2

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC-----------c-----eeEEEecCCceeEEEEecCceEEE---
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-----------R-----CIGELSFRSEVRSVKLRRDRIIVV---  191 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~-----------~-----~~~~~~~~~~i~~~~~~~~~~~~~---  191 (403)
                      .+..++++++...+++++.+     + +++|+....           .     ....+.+...|.+++|+|++.+++   
T Consensus        38 ~~n~lavs~~~~~l~~~~~d-----g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~  111 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGAS-----G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACM  111 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETT-----E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred             CccEEEEecCCCEEEEECCC-----E-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEE
Confidence            34556677766666666665     5 888874311           0     112233567899999999999888   


Q ss_pred             -e---cCeEEEEEcCCc--------ee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEe
Q 015650          192 -L---EQKIFVYNFADL--------KL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM  255 (403)
Q Consensus       192 -~---d~~i~i~d~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~  255 (403)
                       +   |+.|++||++++        +.   +..+.+|...+..++|+|+...++ ++ ++.||.|++||++++.. ....
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l-as-~s~Dg~v~iwD~~~~~~~~~~~  189 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV-AV-CLADGSIAVLQVTETVKVCATL  189 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEE-EE-EETTSCEEEEEESSSEEEEEEE
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEE-EE-EECCCeEEEEEcCCCcceeecc
Confidence             3   889999998765        22   344556888999999999854433 33 34799999999998643 3455


Q ss_pred             ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-----CcccEEEEEeCCCCCEEEEEe-CCC----
Q 015650          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----DRAEIYSLAFSSNAQWLAVSS-DKG----  325 (403)
Q Consensus       256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~l~~s~d~~~l~s~~-~dg----  325 (403)
                      .|...|.+++|+|+|++|++|+.||. |++||++ ++....+..+.     |...|.++.|++++.++++.+ .+|    
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET  267 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence            68899999999999999999999999 9999998 66666665421     233899999999988876543 443    


Q ss_pred             --cEEEEEeecCC
Q 015650          326 --TVHVFNLKVNS  336 (403)
Q Consensus       326 --~v~iwd~~~~~  336 (403)
                        .+++|++.+.+
T Consensus       268 ~~~v~i~~l~~~~  280 (434)
T 2oit_A          268 SPDVVMALLPKKE  280 (434)
T ss_dssp             CCEEEEEECCCTT
T ss_pred             CCceEEEEeccCC
Confidence              38999998764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=2.1e-19  Score=176.98  Aligned_cols=245  Identities=11%  Similarity=0.030  Sum_probs=166.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce-----eEEEEeeeCCeEEEeeCCCCCC----CCCce
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-----GVVEMLFRCNILALVGGGPDPQ----YPLNK  157 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~s~~~d~~----~~~~~  157 (403)
                      ...+++|+|||++|+++ ++.|++|++.+++...  .+. ++..     ....+.|+||+..++.+..+..    ...+.
T Consensus        18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSV--FLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEE--EEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccEECCCCcEEEEc-CCcEEEEECCCCceEE--EEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            45678999999999987 7779999999887653  333 2321     2234778999887776664300    00145


Q ss_pred             EEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEe-eccCC-----------------Cc
Q 015650          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIAN-----------------PK  217 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~-~~~~~-----------------~~  217 (403)
                      +.+||+.+++......+...+..++|+|||+.++  .++.|++||+.+++..+.. .++..                 ..
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            6799999998665334778899999999999888  6999999999887654321 12111                 11


Q ss_pred             eeEEEeeCCCeEEEEeeC-------------------------------C--ccCeEEEEEccC---C---ceeEEee--
Q 015650          218 GLCAVSQGVGSLVLVCPG-------------------------------L--QKGQVRVEHYAS---K---RTKFIMA--  256 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g-------------------------------~--~d~~i~v~d~~~---~---~~~~~~~--  256 (403)
                      ..+.|+||++.++++...                               .  ....|++||+.+   +   ....+..  
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~  253 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence            348899999977665310                               0  012688899988   6   5555543  


Q ss_pred             ----cCCceEEEEEcCCCCEEEEEeC----CCcEEEEEEcCCCc----EE--EEEecCCCcccEE-----EEEeCCCCCE
Q 015650          257 ----HDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDGT----LL--QEVRRGADRAEIY-----SLAFSSNAQW  317 (403)
Q Consensus       257 ----~~~~i~~~~~sp~g~~l~s~~~----dg~~i~iwd~~~~~----~~--~~~~~~~~~~~v~-----~l~~s~d~~~  317 (403)
                          |...+..++|+|||++++....    +.. |++||+.+++    +.  ..+....+...|.     .+.|+|||+.
T Consensus       254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~  332 (740)
T 4a5s_A          254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS  332 (740)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred             cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence                7778999999999997765543    235 9999999887    22  1121111344443     7899999998


Q ss_pred             EE-EEe-CCC--cEEEEEeecCC
Q 015650          318 LA-VSS-DKG--TVHVFNLKVNS  336 (403)
Q Consensus       318 l~-s~~-~dg--~v~iwd~~~~~  336 (403)
                      |+ ..+ .+|  .|++|++++++
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSS
T ss_pred             EEEEEEcCCCceEEEEEECCCCc
Confidence            77 665 344  57777777655

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=2e-18  Score=158.78  Aligned_cols=239  Identities=14%  Similarity=0.107  Sum_probs=164.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCC----------eeEEE----EecccCcceeEEEEeeeCCeEEEe----e
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF----------REIFR----RDFERGGGIGVVEMLFRCNILALV----G  146 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~----------~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~----s  146 (403)
                      ...++.+++++++.++++++.++++||+....          .....    ..+  .+...+.+++|++++..++    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV--PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE--CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc--cCCCcccEEEEcCCCCEEEEEEec
Confidence            34578899999999999998778999886311          00100    111  2455799999999998888    8


Q ss_pred             CCCCCCCCCceEEEEECCCC--------ce---eEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCceeeeEe
Q 015650          147 GGPDPQYPLNKVMIWDDHQS--------RC---IGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQI  210 (403)
Q Consensus       147 ~~~d~~~~~~~i~iwd~~~~--------~~---~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~  210 (403)
                      ++.|     +.|+|||+.++        +.   +..+. |...|.+++|+|+ +.+++   .|++|++||++++..+...
T Consensus       114 gs~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          114 SEYG-----SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             TTTE-----EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             cCCC-----ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence            8888     99999998765        22   23333 7899999999997 66666   4999999999998776666


Q ss_pred             eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeec-------CCceEEEEEcCCCCEEEEEe-CCCc-
Q 015650          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-------DSRIACFALTQDGQLLATSS-TKGT-  281 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~-------~~~i~~~~~sp~g~~l~s~~-~dg~-  281 (403)
                      ..|...+..++|+|+++.++.   |+.||.|++||.+......+..|       ...+.+++|++++.++++.+ .+|. 
T Consensus       189 ~~~~~~v~~v~wspdg~~las---gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~  265 (434)
T 2oit_A          189 LPSTVAVTSVCWSPKGKQLAV---GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL  265 (434)
T ss_dssp             ECGGGCEEEEEECTTSSCEEE---EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             cCCCCceeEEEEcCCCCEEEE---EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence            677888999999999875433   34899999999985444444433       23799999999988875533 3321 


Q ss_pred             ----EEEEEEcCCCc-----EEEEEecC-----CCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEee
Q 015650          282 ----LVRIFNTLDGT-----LLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLK  333 (403)
Q Consensus       282 ----~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~  333 (403)
                          .+++|++...+     ....+...     ....+-..+.+-++.+++++++ ..+.|.|+...
T Consensus       266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence                28899997642     11222110     1122222334446777766555 45556666643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=5.9e-17  Score=140.70  Aligned_cols=239  Identities=13%  Similarity=0.214  Sum_probs=174.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecc-----cCcceeEEEEee-eCCeEEEeeCCC-CCCC
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLF-RCNILALVGGGP-DPQY  153 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~-~~~~~~~~s~~~-d~~~  153 (403)
                      .++-..+.+++++++|+++++.. ++.|.+|+.+. +..  ..+.     .++...+..+++ .+++.++++... +   
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~---   99 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT---   99 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG---
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC---
Confidence            34566789999999999888876 55599999763 333  2222     123356788888 467766666532 4   


Q ss_pred             CCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEee--ccCCCceeEEEeeCC
Q 015650          154 PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGV  226 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~  226 (403)
                        +.|++|| .+++.+..+.  +...+..+++.+++.+++.   ++.|++||. +++.+..+.  .+......+++++++
T Consensus       100 --~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g  175 (286)
T 1q7f_A          100 --HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQ  175 (286)
T ss_dssp             --CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSS
T ss_pred             --CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCC
Confidence              7999999 6777777775  3457899999999987774   578999995 456666554  223345678888876


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCceeEEeec--CCceEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCcEEEEEecCCCc
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                      + ++++  ...++.|++||.....+..+..+  ...+..++++++|+++++...++ . |.+||. +++.+..+..+...
T Consensus       176 ~-l~v~--~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~~~~~  250 (286)
T 1q7f_A          176 E-IFIS--DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALESKVKH  250 (286)
T ss_dssp             E-EEEE--EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEESSCC
T ss_pred             C-EEEE--ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEcccCCC
Confidence            5 4443  23578999999877666555443  35789999999999888887775 8 999994 67777777754333


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ..+.+++++|+|+++++ +.++.|++|++....
T Consensus       251 ~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          251 AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             SCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            45889999999987776 579999999987654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=1.5e-16  Score=141.07  Aligned_cols=241  Identities=10%  Similarity=0.061  Sum_probs=175.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-------------------------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDH-------------------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC  139 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~-------------------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~  139 (403)
                      -+.+.+|+++|+|+++++...+                         .|.+||.++++..  ..+..++-.....+++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEECT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEECC
Confidence            4679999999999999888755                         4899998766654  333323445778899999


Q ss_pred             CeEEEeeCCCCCCCCCceEEEEECCCCc-eeEEEe----------cCCceeEEEEec-CceEEEe----cCeEEEEEcCC
Q 015650          140 NILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELS----------FRSEVRSVKLRR-DRIIVVL----EQKIFVYNFAD  203 (403)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~iwd~~~~~-~~~~~~----------~~~~i~~~~~~~-~~~~~~~----d~~i~i~d~~~  203 (403)
                      ++.++++...+     +.|++|+..... .+..+.          +-.....++++| ++.++++    ++.|++|| .+
T Consensus       101 ~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A          101 DGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             TSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             CCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            98888887777     899999975442 455552          223578999999 7877774    45899999 56


Q ss_pred             ceeeeEeeccC----------CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEe--ecCCceEEEEEcC--
Q 015650          204 LKLLHQIETIA----------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM--AHDSRIACFALTQ--  268 (403)
Q Consensus       204 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~--~~~~~i~~~~~sp--  268 (403)
                      ++.+..+....          .....+++++++..++++-  ..++.|++||..+++ +..+.  .+...+..++|+|  
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d--~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~  252 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD--RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGF  252 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTE
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE--CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCE
Confidence            77777664322          2256789998866666654  467899999998544 44442  3566788999999  


Q ss_pred             ----CCCEEEEEeCCCcEEEEEEcCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          269 ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       269 ----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                          +|+.+++...+.. |++||..+++.+..+.. ..+...+.+|+++|+|.++++...++.|++|+++...
T Consensus       253 ~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred             EEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence                3333223333457 99999999999988742 1244678999999999888888899999999998654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=1.9e-17  Score=150.39  Aligned_cols=245  Identities=13%  Similarity=0.075  Sum_probs=162.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEee-------------
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG-------------  146 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-------------  146 (403)
                      ..++...+..+.|+|||+.|+.+..+ .|++|++.+++........ ........+.+++++..++.             
T Consensus        76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP-AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech-hhcccccceeECCCCCeeccccccCcccccccc
Confidence            34455555567899999999988854 5999999988766444443 12122233345777766652             


Q ss_pred             ---------CCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEec-CceEEE--e-------cCeEEEEEcCCceee
Q 015650          147 ---------GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--L-------EQKIFVYNFADLKLL  207 (403)
Q Consensus       147 ---------~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~--~-------d~~i~i~d~~~~~~~  207 (403)
                               ...+     ..|++||+.+++......+...+..+.|+| |+..++  .       ...|+++|+..++. 
T Consensus       155 ~~~~~~~~~~~~~-----~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-  228 (388)
T 3pe7_A          155 WKKFHEFYFTKPC-----CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-  228 (388)
T ss_dssp             HHHHHHHGGGCCC-----EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-
T ss_pred             cchhhhhhccCCc-----ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-
Confidence                     2233     789999999997766666778899999999 998776  2       22788888765543 


Q ss_pred             eEeeccCC--CceeEEEeeCCCeEEEEeeCCc--cCeEEEEEccCCceeEEeecCCc------eEEEEEcCCCCEEEEE-
Q 015650          208 HQIETIAN--PKGLCAVSQGVGSLVLVCPGLQ--KGQVRVEHYASKRTKFIMAHDSR------IACFALTQDGQLLATS-  276 (403)
Q Consensus       208 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~--d~~i~v~d~~~~~~~~~~~~~~~------i~~~~~sp~g~~l~s~-  276 (403)
                      ..+..+..  .+...+|+|+++.++++.....  +..|++||+.+++...+......      ...+.|+|||+.|+.. 
T Consensus       229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~  308 (388)
T 3pe7_A          229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDV  308 (388)
T ss_dssp             EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred             EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence            33333332  3566789999998766542211  22499999998776554332221      1223799999988754 


Q ss_pred             --------eCCCcEEEEEEcCCCcEEEEEecCCCcc-----------cEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650          277 --------STKGTLVRIFNTLDGTLLQEVRRGADRA-----------EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       277 --------~~dg~~i~iwd~~~~~~~~~~~~~~~~~-----------~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                              ..+.. |++||+.+++.. .+..  +..           .+.+++|+|||++|+..+ .+|...||.++-..
T Consensus       309 ~~~~~~~~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          309 QDDSGYKIENDPF-LYVFNMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             --------CCCCE-EEEEETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             eeccccccCCCCE-EEEEeccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence                    34556 999999887764 3443  223           478899999999888666 57777788776543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=1.7e-17  Score=148.93  Aligned_cols=230  Identities=12%  Similarity=0.098  Sum_probs=156.5

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEEecccC---cceeEEEEeeeCCeEEEeeCC--CCCCC
Q 015650           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERG---GGIGVVEMLFRCNILALVGGG--PDPQY  153 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~s~~--~d~~~  153 (403)
                      .++|+|||++|+++.           ++.|.+||..+.+......+...   +......+.+++++.+++.+.  .+   
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~---  130 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA---  130 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS---
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC---
Confidence            899999999998875           23499999987766533332101   123345678899887766553  24   


Q ss_pred             CCceEEEEECCCCceeEE-EecCCceeEEEEecCc--eEEE--ecCeEEEEEcCC-ceeeeE------eeccCCCceeEE
Q 015650          154 PLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFAD-LKLLHQ------IETIANPKGLCA  221 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~--~d~~i~i~d~~~-~~~~~~------~~~~~~~~~~~~  221 (403)
                        +.|.+||+.+++.+.. +..... ..+.+.|++  .+++  .||.+.+|++.. ++....      +.....++ .+.
T Consensus       131 --~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~  206 (361)
T 2oiz_A          131 --TSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIA  206 (361)
T ss_dssp             --EEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSC
T ss_pred             --CeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEE
Confidence              7999999999988887 654332 235566765  3333  488888888865 544321      22222221 233


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee---------cC----CceEEEEEcCCCCEEEEEeC----------
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA---------HD----SRIACFALTQDGQLLATSST----------  278 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~---------~~----~~i~~~~~sp~g~~l~s~~~----------  278 (403)
                      .++++..+++..   .++.|.++|+..........         +.    .....++|+|++++++.+..          
T Consensus       207 ~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~  283 (361)
T 2oiz_A          207 PALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF  283 (361)
T ss_dssp             CEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred             ecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence            467776665553   56889999987654332211         00    11123789999888877643          


Q ss_pred             -CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          279 -KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       279 -dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                       .+. |.+||+.+++.+.++..+   . +.+|+|+|||++|++++. +.|.+||..++
T Consensus       284 ~~~~-v~viD~~t~~~v~~i~~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          284 PAAE-IWVMDTKTKQRVARIPGR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             CCSE-EEEEETTTTEEEEEEECT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             CCce-EEEEECCCCcEEEEEecC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence             246 999999999999999863   3 899999999999998887 99999999998

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.78  E-value=2.1e-16  Score=141.22  Aligned_cols=224  Identities=8%  Similarity=0.047  Sum_probs=150.0

Q ss_pred             CCeEEEEEcCCCCEEEEEc----------CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           86 PTLLHISFNQDHGCFAAGT----------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~----------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ..+...++  ||+.++...          +..|.+|++++++...   +     ..+..+.|+|++..++....+..-..
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l-----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I-----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E-----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c-----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            45677888  899887652          2238899988765432   2     34667899999876665443200001


Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--e-c---------------------------CeEEEEEcCCce
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L-E---------------------------QKIFVYNFADLK  205 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-d---------------------------~~i~i~d~~~~~  205 (403)
                      ..|++|++.+++......+.. +..+.|+||+..++  . +                           ..|++||+.+++
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             ceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            358889998887766655555 99999999998776  2 2                           469999998887


Q ss_pred             eeeEeeccCCCceeEEEeeCCCeEEEEeeCCcc----C-eEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-
Q 015650          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK----G-QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-  279 (403)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----~-~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-  279 (403)
                      .+..+.. . .+..+.|+|++  ++++.....+    . ...||.++++....+..+ ..+..+  +|||++|+.++.+ 
T Consensus       164 ~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~  236 (347)
T 2gop_A          164 VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPE  236 (347)
T ss_dssp             EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCS
T ss_pred             EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccc
Confidence            7455554 3 77889999987  4443322111    1 334444436556566555 555554  9999998877754 


Q ss_pred             -------CcEEEEEEcCCCcEEEEEecCCCcccEEE-EEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          280 -------GTLVRIFNTLDGTLLQEVRRGADRAEIYS-LAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       280 -------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~-l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                             .. |++||  +++.. .+... +...+.. +.|+ |+ ++++++.++.++|| ++++
T Consensus       237 ~~~~~~~~~-l~~~d--~~~~~-~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          237 KKYMSEHNK-LYIYD--GKEVM-GILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             SSCCCSSCE-EEEEC--SSCEE-ESSTT-CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred             cCCccccce-EEEEC--CCceE-ecccc-CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence                   35 88888  56544 33322 4567886 9999 88 88899999999999 9843

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=2e-18  Score=169.71  Aligned_cols=189  Identities=14%  Similarity=0.178  Sum_probs=138.6

Q ss_pred             EEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCC----ceeEEEEecCceEEE--e----------cCeEE
Q 015650          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS----EVRSVKLRRDRIIVV--L----------EQKIF  197 (403)
Q Consensus       134 ~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~--~----------d~~i~  197 (403)
                      .+.|++++.+++++. +     +.|++||+.+++....+.+..    .+.+++|+|||++++  .          ++.|+
T Consensus        20 ~~~~s~dg~~~~~~~-d-----~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQSA-D-----NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEECT-T-----SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEEcC-C-----CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            668899997776654 6     899999999999877776332    489999999999887  2          47999


Q ss_pred             EEEcCCceee--eEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe--ecCCce------------
Q 015650          198 VYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRI------------  261 (403)
Q Consensus       198 i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~i------------  261 (403)
                      +||+.+++.+  ..+   ...+..++|+|+++.++++    .++.|++|++.++....+.  ++...+            
T Consensus        94 ~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~----~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee  166 (719)
T 1z68_A           94 IYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYV----YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE  166 (719)
T ss_dssp             EEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred             EEECCCCccccceec---CcccccceECCCCCEEEEE----ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence            9999988763  222   2457889999999976554    4689999999886655442  222222            


Q ss_pred             -----EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEEEcCCCcEE--EEEec-
Q 015650          262 -----ACFALTQDGQLLATSSTKG----------------------------------TLVRIFNTLDGTLL--QEVRR-  299 (403)
Q Consensus       262 -----~~~~~sp~g~~l~s~~~dg----------------------------------~~i~iwd~~~~~~~--~~~~~-  299 (403)
                           .+++|+|||++|++++.|.                                  . |++||+.+++.+  ..+.. 
T Consensus       167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~  245 (719)
T 1z68_A          167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR-IFIIDTTYPAYVGPQEVPVP  245 (719)
T ss_dssp             TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE-EEEEESSCHHHHCCEECCCC
T ss_pred             cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE-EEEEECCCCCccceeEccCC
Confidence                 4899999999999987652                                  5 889999887652  12211 


Q ss_pred             ---CCCcccEEEEEeCCCCCEEEEEeCC----CcEEEEE----eecCC
Q 015650          300 ---GADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFN----LKVNS  336 (403)
Q Consensus       300 ---~~~~~~v~~l~~s~d~~~l~s~~~d----g~v~iwd----~~~~~  336 (403)
                         ..|...+.+++|+||++++++....    ..|++||    +.+++
T Consensus       246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence               1256689999999998877775432    2488888    55554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=2.8e-17  Score=161.78  Aligned_cols=193  Identities=11%  Similarity=0.116  Sum_probs=142.2

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCC-----ceeEEEEecCceEEE--ec---------
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS-----EVRSVKLRRDRIIVV--LE---------  193 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~-----~i~~~~~~~~~~~~~--~d---------  193 (403)
                      ....+.|++++.+++++  +     +.|++||+.+++....+. +..     ....+.|+|||+.++  .+         
T Consensus        18 ~~~~~~w~~dg~~~~~~--~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--E-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--T-----TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             cccccEECCCCcEEEEc--C-----CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            35578999999999886  5     899999999999877776 332     224588999999887  23         


Q ss_pred             -CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe--ecCCce---------
Q 015650          194 -QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRI---------  261 (403)
Q Consensus       194 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~i---------  261 (403)
                       +.+++||+.+++... +..+...+...+|+|+++.++++    .++.|++|++.++....+.  ++...+         
T Consensus        91 ~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~----~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           91 TASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             EEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             ceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE----ECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence             678899999987654 55566778899999999976554    4689999999886655543  222222         


Q ss_pred             --------EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEEEcCC---Cc--
Q 015650          262 --------ACFALTQDGQLLATSSTKG------------------------------------TLVRIFNTLD---GT--  292 (403)
Q Consensus       262 --------~~~~~sp~g~~l~s~~~dg------------------------------------~~i~iwd~~~---~~--  292 (403)
                              ..+.|||||++||..+.|.                                    . |++||+.+   ++  
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~-l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK-FFVVNTDSLSSVTNA  244 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE-EEEEETTSCCSSSCC
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE-EEEEECCCCCCCCcc
Confidence                    3489999999999875321                                    4 88899988   73  


Q ss_pred             EEEEEecC----CCcccEEEEEeCCCCCEEEEEeC----CCcEEEEEeecCC
Q 015650          293 LLQEVRRG----ADRAEIYSLAFSSNAQWLAVSSD----KGTVHVFNLKVNS  336 (403)
Q Consensus       293 ~~~~~~~~----~~~~~v~~l~~s~d~~~l~s~~~----dg~v~iwd~~~~~  336 (403)
                      ....+...    .+...+..++|+|||+.++....    +..|++||+.+++
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            22334321    15567999999999997765542    3479999999987

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=7.5e-17  Score=156.96  Aligned_cols=243  Identities=12%  Similarity=0.011  Sum_probs=164.3

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEE--cCC-cEEEEEcCCCeeEEEEecccCcceeEE---------EEeee--CCeEE
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAG--TDH-GFRIYNCDPFREIFRRDFERGGGIGVV---------EMLFR--CNILA  143 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~--~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~  143 (403)
                      ...+.+|...|..++|++++.+++..  ..+ ...||........  +.+. .+...+.         .+.|+  ||+..
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~   92 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE--ESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGP   92 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE--EESS-CTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc--ceeC-CCCccccccccccCCccceeeeecCCCe
Confidence            34566788999999999887777776  333 4889986444333  3343 2333333         44444  77654


Q ss_pred             -Ee-eCCCCCCCCCceEEEEECC--C-CceeEEEe------cCCceeEEEEecCceEEE---ec----------CeEEEE
Q 015650          144 -LV-GGGPDPQYPLNKVMIWDDH--Q-SRCIGELS------FRSEVRSVKLRRDRIIVV---LE----------QKIFVY  199 (403)
Q Consensus       144 -~~-s~~~d~~~~~~~i~iwd~~--~-~~~~~~~~------~~~~i~~~~~~~~~~~~~---~d----------~~i~i~  199 (403)
                       ++ +...+     ..|+++++.  . ++. ..+.      +...+..++|+|||+.++   .+          ..|++|
T Consensus        93 ~la~~~~~~-----~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           93 LLVFTHFGD-----QRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             EEEEEBTTT-----CCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             EEEEEECCC-----CeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence             44 43334     678888876  3 443 3333      345688999999998777   24          489999


Q ss_pred             EcCC------ceeeeEee-ccCCCceeEEEeeCCCeEEEEeeCC-----ccCeEEEEEcc-CC---ceeEEe-ecCCceE
Q 015650          200 NFAD------LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHYA-SK---RTKFIM-AHDSRIA  262 (403)
Q Consensus       200 d~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-----~d~~i~v~d~~-~~---~~~~~~-~~~~~i~  262 (403)
                      |+.+      ++. ..+. .+...+..++|+|+++.++++....     ....|++||+. ++   ....+. .|...+.
T Consensus       167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~  245 (662)
T 3azo_A          167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA  245 (662)
T ss_dssp             ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred             ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence            9987      543 3444 4445566789999999776654221     12479999998 45   444444 4578899


Q ss_pred             EEEEcCCCCEEEEEeCCC--cEEEEEEcCCCcEEEEEecCCCccc--------EEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          263 CFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEVRRGADRAE--------IYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       263 ~~~~sp~g~~l~s~~~dg--~~i~iwd~~~~~~~~~~~~~~~~~~--------v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                      .+.|+|||++++++..++  . |++||+.+++.......  +...        +..++|+|++++++++.. +.++||.+
T Consensus       246 ~~~~spdg~l~~~~~~~~~~~-l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          246 QAEWAPDGSLIVATDRTGWWN-LHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             EEEECTTSCEEEEECTTSSCE-EEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             ceEECCCCeEEEEECCCCCeE-EEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence            999999999888887777  5 67777767765443332  2111        567899999999999998 99999976


Q ss_pred             ec
Q 015650          333 KV  334 (403)
Q Consensus       333 ~~  334 (403)
                      +.
T Consensus       322 d~  323 (662)
T 3azo_A          322 DP  323 (662)
T ss_dssp             ET
T ss_pred             EC
Confidence            64

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=6.2e-16  Score=137.33  Aligned_cols=268  Identities=14%  Similarity=0.086  Sum_probs=179.4

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC
Q 015650           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      ..|.++.|++++..++... ++.++.|.   .+..  ..+. .+...+..+.|++++.+++++..+     +.|.+||..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~-~~~~~~~~~~~~~~g~l~~~~~~~-----~~i~~~d~~   74 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPW--LEIS-KKGLQLEGLNFDRQGQLFLLDVFE-----GNIFKINPE   74 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE--EEEE-SSCCCEEEEEECTTSCEEEEETTT-----CEEEEECTT
T ss_pred             cccceeeecCCccceeEEeecccCcccc---ccee--EEEe-ccCccccCcEECCCCCEEEEECCC-----CEEEEEeCC
Confidence            3467788999887665544 55688883   2222  3333 345566888999998877776666     899999998


Q ss_pred             CCceeEEEe-cCCceeEEEEecCceEEEe---c----CeEEEEEcCCceeeeEee--ccCCCceeEEEeeCCCeEEEEee
Q 015650          165 QSRCIGELS-FRSEVRSVKLRRDRIIVVL---E----QKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       165 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d----~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      +++...... +...+.++++++++.+++.   +    +.|++||..+++....+.  .....+..++++++++ ++++..
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~  153 (333)
T 2dg1_A           75 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDF  153 (333)
T ss_dssp             TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEEC
T ss_pred             CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEec
Confidence            887665543 6678999999999987763   2    489999988766543332  1234566788888764 444431


Q ss_pred             CC----ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEE-eCCCcEEEEEEcCC-CcEEEEE-----ecCCCc
Q 015650          235 GL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLD-GTLLQEV-----RRGADR  303 (403)
Q Consensus       235 g~----~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~-~~dg~~i~iwd~~~-~~~~~~~-----~~~~~~  303 (403)
                      ..    ..+.|..+|..++....+..+...+..++|+|+|++|+.+ +.++. |++||+.+ ++.+..+     ......
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~  232 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGH  232 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred             cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCC
Confidence            10    1345666666665655554455568899999999866544 45677 99999863 4332221     110011


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC--
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG--  381 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  381 (403)
                      ..+..++++++|+++++...++.|.+||.+ ++.                                   +..+..+..  
T Consensus       233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~-----------------------------------~~~~~~~~~~~  276 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYP-----------------------------------IGQILIPGRDE  276 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCE-----------------------------------EEEEECTTGGG
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCE-----------------------------------EEEEEcCCCcc
Confidence            367889999999988888788999999873 331                                   112233222  


Q ss_pred             ----CceEEEeccCCCEEEEEccCC
Q 015650          382 ----SPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       382 ----~~~~~~fs~d~~~l~~~~~dG  402 (403)
                          .+..++|+||++.|++++.+|
T Consensus       277 g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          277 GHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             ccccCcceEEECCCCCEEEEEeCcc
Confidence                578899999998888777654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=8.5e-15  Score=129.60  Aligned_cols=218  Identities=9%  Similarity=0.028  Sum_probs=158.3

Q ss_pred             CCcEEEEEcCCCeeEEEEeccc-----CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCcee
Q 015650          105 DHGFRIYNCDPFREIFRRDFER-----GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR  179 (403)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~  179 (403)
                      +++|.+||.++++..  ..+..     ........+.+..+..+++... +     +.|.+||..+++.+.++.......
T Consensus        16 ~~~l~~~d~~t~~~~--~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-~-----~~v~viD~~t~~~~~~i~~~~~p~   87 (328)
T 3dsm_A           16 NATLSYYDPATCEVE--NEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-S-----HVIFAIDINTFKEVGRITGFTSPR   87 (328)
T ss_dssp             CBEEEEEETTTTEEE--CSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-G-----TEEEEEETTTCCEEEEEECCSSEE
T ss_pred             CceEEEEECCCCEEh--hhhHhhhcCcccCccceEEEEECCEEEEEEcC-C-----CEEEEEECcccEEEEEcCCCCCCc
Confidence            345999999877643  32210     1123456677777766666654 4     799999999999999888667889


Q ss_pred             EEEEecCceEEEe---cCeEEEEEcCCceeeeEeeccCC-----CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650          180 SVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (403)
Q Consensus       180 ~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~  251 (403)
                      .+++++++++.+.   ++.|.+||+.+++....+.....     ....+++  +++.++++..+ .++.|.++|..+.++
T Consensus        88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-~~~~v~viD~~t~~~  164 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-YQNRILKIDTETDKV  164 (328)
T ss_dssp             EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-TCCEEEEEETTTTEE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-CCCEEEEEECCCCeE
Confidence            9999888876663   68999999999988877765430     2345555  55666665422 478999999998665


Q ss_pred             eEEeecCCceEEEEEcCCCCEEEEEeCC----------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650          252 KFIMAHDSRIACFALTQDGQLLATSSTK----------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (403)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~g~~l~s~~~d----------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~  321 (403)
                      ............++++|+|++++++..+          +. |.++|..+++....+... .......++|+||+++|+++
T Consensus       165 ~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~  242 (328)
T 3dsm_A          165 VDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWI  242 (328)
T ss_dssp             EEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEE
Confidence            4433334456789999999977776554          67 999999999988777642 12368999999999999887


Q ss_pred             eCCCcEEEEEeecCCC
Q 015650          322 SDKGTVHVFNLKVNSG  337 (403)
Q Consensus       322 ~~dg~v~iwd~~~~~~  337 (403)
                      ..  .|.+||+.+++.
T Consensus       243 ~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          243 NN--DIWRMPVEADRV  256 (328)
T ss_dssp             SS--SEEEEETTCSSC
T ss_pred             cc--EEEEEECCCCce
Confidence            54  899999988774

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.72  E-value=2.1e-15  Score=147.83  Aligned_cols=247  Identities=10%  Similarity=0.027  Sum_probs=171.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-C-----cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC----
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTD-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----  152 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~-~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~----  152 (403)
                      +|...+..++|||||++||.+.+ +     .|++||+.+++.... .+.   ...+..+.|++|+..|+.+..+..    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEE---EECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-ccc---CcccceEEEEeCCCEEEEEEECCccccc
Confidence            34456889999999999987752 2     499999988776532 222   223557889998766665544311    


Q ss_pred             -------CCCceEEEEECCCCcee--EEEe---cCCceeEEEEecCceEEE---e-----cCeEEEEEcCC------ce-
Q 015650          153 -------YPLNKVMIWDDHQSRCI--GELS---FRSEVRSVKLRRDRIIVV---L-----EQKIFVYNFAD------LK-  205 (403)
Q Consensus       153 -------~~~~~i~iwd~~~~~~~--~~~~---~~~~i~~~~~~~~~~~~~---~-----d~~i~i~d~~~------~~-  205 (403)
                             .....|++|++.+++..  ..+.   +...+..+.|+|||++++   .     +..|++||+.+      +. 
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                   00134999999887632  2223   344578999999999877   2     46899999986      43 


Q ss_pred             eeeEeeccCCCceeEEEeeCCCeEEEEeeC-CccCeEEEEEccCCc---eeEEeecCC--ceEEEEEcCCCCEEEEEeCC
Q 015650          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASKR---TKFIMAHDS--RIACFALTQDGQLLATSSTK  279 (403)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~v~d~~~~~---~~~~~~~~~--~i~~~~~sp~g~~l~s~~~d  279 (403)
                      ....+..+...... .++++++.+++.+.. ...+.|.+||+.+..   ...+..|..  .+..+.|++++.++++...+
T Consensus       278 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            35555555554443 588999888777521 124579999998753   355555544  68889999888888888888


Q ss_pred             Cc-EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe----CCCcEEEEEeecCC
Q 015650          280 GT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS----DKGTVHVFNLKVNS  336 (403)
Q Consensus       280 g~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~----~dg~v~iwd~~~~~  336 (403)
                      +. .|++||+.+++.+..+..  +...+..+.++|+++.|+...    ..+.|++||+.+++
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            74 167778878887777775  456789999999998766432    45789999998876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=2e-15  Score=133.81  Aligned_cols=238  Identities=11%  Similarity=0.072  Sum_probs=161.4

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCC-------------------CCceEEEEECCCCceeEEEe--cCCceeEEEEecCce
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQY-------------------PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRI  188 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~-------------------~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~  188 (403)
                      ..+..+++++++.++++...+...                   ..+.|.+||..+++.+..+.  +-.....+++++++.
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            467888888888777766554100                   11379999998898877665  345788999999998


Q ss_pred             EEEe---cCeEEEEEcCCce-eeeEee---------ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe
Q 015650          189 IVVL---EQKIFVYNFADLK-LLHQIE---------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM  255 (403)
Q Consensus       189 ~~~~---d~~i~i~d~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~  255 (403)
                      ++++   ++.|++||..... .+..+.         .+......+++++++..++++- +..++.|++|+........+.
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d-~~~~~~I~~~~~~g~~~~~~~  182 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD-GYCNSRIVQFSPSGKFVTQWG  182 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE-CSSCCEEEEECTTSCEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe-CCCCCeEEEEcCCCCEEEEec
Confidence            7774   5799999975432 455542         2222456788888555555553 214789999996655555543


Q ss_pred             ec----------CCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE---
Q 015650          256 AH----------DSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS---  321 (403)
Q Consensus       256 ~~----------~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~---  321 (403)
                      ..          -.....++++|+ +.++++...++. |++||..+++.+..+....+...+.+++|+| +..+++.   
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            22          234789999998 777777777788 9999998899998887554566889999999 4333333   


Q ss_pred             ----eCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEE
Q 015650          322 ----SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVI  397 (403)
Q Consensus       322 ----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~  397 (403)
                          ..+..|++|++.+++....+.                                ....+-..+..++|+|||+.+++
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~--------------------------------~~~~~~~~p~~ia~~~dG~lyva  308 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFK--------------------------------PVRKHFDMPHDIVASEDGTVYIG  308 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEEC--------------------------------CSSSCCSSEEEEEECTTSEEEEE
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEc--------------------------------CCCCccCCeeEEEECCCCCEEEE
Confidence                345589999998877311100                                00112245778999999976666


Q ss_pred             EccCC
Q 015650          398 LGMDG  402 (403)
Q Consensus       398 ~~~dG  402 (403)
                      ...++
T Consensus       309 d~~~~  313 (329)
T 3fvz_A          309 DAHTN  313 (329)
T ss_dssp             ESSSC
T ss_pred             ECCCC
Confidence            65554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=1.6e-14  Score=125.31  Aligned_cols=193  Identities=13%  Similarity=0.138  Sum_probs=142.7

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec-------CCceeEEEE-ecCceEEE-e---cCe
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKL-RRDRIIVV-L---EQK  195 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~-------~~~i~~~~~-~~~~~~~~-~---d~~  195 (403)
                      +-.....+++++++.++++...+     +.|.+||.. ++.+..+..       ...+..+++ .+++.+++ .   ++.
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~-----~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNN-----HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGG-----TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             ccCCCceEEECCCCCEEEEECCC-----CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            44567888999888877776666     899999976 666666642       246789999 47777666 2   679


Q ss_pred             EEEEEcCCceeeeEeec-cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe--ecCCceEEEEEcCCCCE
Q 015650          196 IFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQL  272 (403)
Q Consensus       196 i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~sp~g~~  272 (403)
                      |++|| .+++.+..+.. .......+++.++++ ++++.  ..++.|.+||........+.  .+...+..++++++|++
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVE--CKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEE--TTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEE--CCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCE
Confidence            99999 56777666643 234557788888775 44443  35689999997765555553  34456899999999998


Q ss_pred             EEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC-cEEEEEe
Q 015650          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNL  332 (403)
Q Consensus       273 l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg-~v~iwd~  332 (403)
                      +++...++. |++||. +++.+..+....+...+..|+++++|+++++...++ .|++|+.
T Consensus       178 ~v~~~~~~~-i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          178 FISDNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             EEEEGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             EEEECCCCE-EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            887777888 999996 566766765422235789999999999888887776 9999984

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.71  E-value=4.4e-14  Score=133.21  Aligned_cols=229  Identities=12%  Similarity=0.097  Sum_probs=162.4

Q ss_pred             CCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC--CCceeEE
Q 015650           95 QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGE  171 (403)
Q Consensus        95 ~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~--~~~~~~~  171 (403)
                      +.+.++++.. ++.|.++|..+++.+  ..+.  .......+.+++++.+++.++.+     +.|.+||+.  +++.+..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~--~~i~--~g~~p~~v~~SpDGr~lyv~~~d-----g~V~viD~~~~t~~~v~~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIK--TVLD--TGYAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAE  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEE--EEEE--CSSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEE--EEEe--CCCCccceEECCCCCEEEEEcCC-----CeEEEEECCCCCCcEeEE
Confidence            4444555555 445999999888765  4443  22345588899999887777777     999999995  8888888


Q ss_pred             EecCCceeEEEEe----cCceEEE----ecCeEEEEEcCCceeeeEeeccC----------C-CceeEEEeeCCCeEEEE
Q 015650          172 LSFRSEVRSVKLR----RDRIIVV----LEQKIFVYNFADLKLLHQIETIA----------N-PKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       172 ~~~~~~i~~~~~~----~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~  232 (403)
                      +........++|+    |||++++    .+++|.++|..+.+.++.+....          . .+..+..++++..+++.
T Consensus       236 i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          236 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            8865667899999    6998777    47899999999998888775321          1 34566777776655444


Q ss_pred             eeCCccCeEEEEEccCCceeE--EeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEec-CC--CcccE
Q 015650          233 CPGLQKGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRR-GA--DRAEI  306 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~-~~--~~~~v  306 (403)
                      .  ...|.|.++|........  ..........+.|+|+|++|++++. ++. |.++|+.+++.+..+.. +.  |.+.-
T Consensus       316 ~--~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g  392 (567)
T 1qks_A          316 V--KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRG  392 (567)
T ss_dssp             E--TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred             e--cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCccc
Confidence            3  477999999987643211  1223455778999999999877664 556 99999999998887765 22  32222


Q ss_pred             EEEEeCCCCCEE-EEEe-CCCcEEEEEeecCC
Q 015650          307 YSLAFSSNAQWL-AVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       307 ~~l~~s~d~~~l-~s~~-~dg~v~iwd~~~~~  336 (403)
                      ..+ ++|++..+ +++. .++.|.++|.++.+
T Consensus       393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~  423 (567)
T 1qks_A          393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEG  423 (567)
T ss_dssp             EEE-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             eee-ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence            222 57875544 4443 56899999998754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=4.3e-14  Score=123.24  Aligned_cols=234  Identities=9%  Similarity=-0.029  Sum_probs=163.7

Q ss_pred             ccCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           80 TSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      .+..+.....+++|+|+|+ +++++. +++|..|+.++.  .  ..+. .+...+..+.+++++.++++...+     +.
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~--~~~~-~~~~~~~~l~~~~dg~l~v~~~~~-----~~   91 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L--SPEM-HPSHHQNGHCLNKQGHLIACSHGL-----RR   91 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E--EEEE-SSCSSEEEEEECTTCCEEEEETTT-----TE
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e--EEEE-CCCCCcceeeECCCCcEEEEecCC-----Ce
Confidence            3444556778999999998 666776 555999998776  2  2332 345668899999998888777665     78


Q ss_pred             EEEEECCCCceeEEEe-c----CCceeEEEEecCceEEEec--------------------CeEEEEEcCCceeeeEeec
Q 015650          158 VMIWDDHQSRCIGELS-F----RSEVRSVKLRRDRIIVVLE--------------------QKIFVYNFADLKLLHQIET  212 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~----~~~i~~~~~~~~~~~~~~d--------------------~~i~i~d~~~~~~~~~~~~  212 (403)
                      |.+||..+++...... .    ...+..+++.++|.++++|                    +.|+.++.. ++ +..+..
T Consensus        92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~  169 (296)
T 3e5z_A           92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR  169 (296)
T ss_dssp             EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC
T ss_pred             EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec
Confidence            9999998887544332 1    2356789999999988842                    356666654 44 333444


Q ss_pred             cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc-CCce----eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRT----KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~-~~~~----~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd  287 (403)
                      .......++++++++.+ ++  ...++.|.+|++. .+.+    ..+..+...+..++++++|+++++.  ++. |.+||
T Consensus       170 ~~~~~~gi~~s~dg~~l-v~--~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~  243 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLL-VS--DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLT  243 (296)
T ss_dssp             CCSSEEEEEECTTSCEE-EE--ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEEC
T ss_pred             CCCCCccEEECCCCCEE-EE--eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEEC
Confidence            44455778999998865 33  3467899999986 3433    2223345567789999999976665  677 99999


Q ss_pred             cCCCcEEEEEecCCCcccEEEEEe-CCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          288 TLDGTLLQEVRRGADRAEIYSLAF-SSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~-s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .. ++.+..+..  +.. +.+++| +|+++.|++++.++ +.-++.++.+
T Consensus       244 ~~-g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          244 PD-GDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             TT-SCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             CC-CCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence            75 888888875  334 899999 68999998888763 4444554444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.70  E-value=1.3e-14  Score=131.70  Aligned_cols=231  Identities=10%  Similarity=0.001  Sum_probs=151.0

Q ss_pred             EEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEE-------------------EeeeCCeEEEeeC--
Q 015650           90 HISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVE-------------------MLFRCNILALVGG--  147 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~s~--  147 (403)
                      .+.|+|||++|+....+ .|.+|++.+++........   ......                   ..+++++..++..  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  161 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD---EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF  161 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC---TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc---cccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence            37899999999887754 5999999877654333322   111111                   2334444333221  


Q ss_pred             ---CCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEec-CceEEE--ec-------CeEEEEEcCCceeeeEeeccC
Q 015650          148 ---GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--LE-------QKIFVYNFADLKLLHQIETIA  214 (403)
Q Consensus       148 ---~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~--~d-------~~i~i~d~~~~~~~~~~~~~~  214 (403)
                         ..+     ..|++||+.+++......+...+..+.|+| ++..++  .+       ..|++||+..++.. .+..+.
T Consensus       162 ~~~~~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~  235 (396)
T 3c5m_A          162 YHTNPT-----CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHA  235 (396)
T ss_dssp             HHTCCC-----EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCC
T ss_pred             ccCCCc-----ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccC
Confidence               233     789999999988766666778899999999 787555  22       46999998765433 232221


Q ss_pred             --CCceeEEEeeCCCeEEEEeeCCcc--CeEEEEEccCCceeEEeecCCceEEEEEcC-CCCEEEEEe------------
Q 015650          215 --NPKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSS------------  277 (403)
Q Consensus       215 --~~~~~~~~~~~~~~~~~~~~g~~d--~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~------------  277 (403)
                        ..+..++|+|+++.++++......  +.|++||+.++....+..... .. +.|+| ||++|++++            
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~  313 (396)
T 3c5m_A          236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADS  313 (396)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC---------
T ss_pred             CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccc
Confidence              235568999999877665421112  459999998877665543332 33 89999 999888754            


Q ss_pred             ----CCCcEEEEEEcCCCcEEEEEecCCCcc-----------cEEEEEeCCCCCEEEEEe-CCCcEEEEEeecC
Q 015650          278 ----TKGTLVRIFNTLDGTLLQEVRRGADRA-----------EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       278 ----~dg~~i~iwd~~~~~~~~~~~~~~~~~-----------~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~  335 (403)
                          .+.. |++||+.+++.. .+..  +..           .+..+.|+|||+.|+.++ .++...||.++-.
T Consensus       314 ~~~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~  383 (396)
T 3c5m_A          314 YNIENDPF-LYVLNTKAKSAQ-KLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP  383 (396)
T ss_dssp             -CCCCCCE-EEEEETTTTBCC-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             cccCCCCc-EEEEecccCceE-EccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence                2356 999999887754 3433  222           256789999999888776 4566666666533

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=2e-15  Score=135.45  Aligned_cols=252  Identities=10%  Similarity=0.019  Sum_probs=167.8

Q ss_pred             CCCEEEEEc-------CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC----------CCCCCCCceE
Q 015650           96 DHGCFAAGT-------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKV  158 (403)
Q Consensus        96 d~~~l~~~~-------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~i  158 (403)
                      +++++.+..       ++.|.+||..+++..  ..+. .+...  .+.+++++..++.+.          .+     +.|
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~--~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~-----~~v   83 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL--GMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRS-----DVV   83 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEE--EEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEE-----EEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEE--EEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCC-----CEE
Confidence            555555442       446999998887655  4454 23333  889999987666553          24     679


Q ss_pred             EEEECCCCceeEEEe-c------CCceeEEEEecCceEEE-e----cCeEEEEEcCCceeeeE-eeccCCCceeEEEeeC
Q 015650          159 MIWDDHQSRCIGELS-F------RSEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQG  225 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~-~------~~~i~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~  225 (403)
                      .+||..+++.+.++. .      ......++++|||++++ .    +++|.+||+.+++.+.. +...  ....+.+.|+
T Consensus        84 ~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~  161 (361)
T 2oiz_A           84 EVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPN  161 (361)
T ss_dssp             EEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTT
T ss_pred             EEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCC
Confidence            999999999988886 2      24567899999998877 2    46899999999988777 5432  1122556777


Q ss_pred             CCeEEEEeeCCccCeEEEEEccC-Ccee-E------EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE--EE
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYAS-KRTK-F------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQ  295 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~-~~~~-~------~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~~  295 (403)
                      +...+++.  +.||.+.+|++.. ++.. .      +..+..+ ..+.+++++..++..+.++. |.++|+.....  +.
T Consensus       162 ~~~~~~~~--~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~  237 (361)
T 2oiz_A          162 RPRSFMTI--CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDG  237 (361)
T ss_dssp             SSSEEEEE--ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEE
T ss_pred             CCeeEEEE--CCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCe-EEEEEecCCCceecc
Confidence            65555554  3678898888865 3332 1      1111222 23344677888888888898 99999875542  22


Q ss_pred             EEecCC----C----cccEEEEEeCCCCCEEEEEeC-----------CCcEEEEEeecCCCCCCCCCCCCCCCCCccccc
Q 015650          296 EVRRGA----D----RAEIYSLAFSSNAQWLAVSSD-----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (403)
Q Consensus       296 ~~~~~~----~----~~~v~~l~~s~d~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (403)
                      .+....    .    ......++|+||++.++++..           .+.|.+||+.+++.                   
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-------------------  298 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-------------------  298 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-------------------
T ss_pred             cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-------------------
Confidence            222100    0    011123789999888877643           34799999988773                   


Q ss_pred             ccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                                      +.++..+.  +..++|+|||++|++++.
T Consensus       299 ----------------v~~i~~~~--p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          299 ----------------VARIPGRD--ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             ----------------EEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred             ----------------EEEEecCC--eeEEEECCCCCEEEEeCC
Confidence                            33445544  889999999999998875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=1.2e-15  Score=148.58  Aligned_cols=199  Identities=7%  Similarity=-0.020  Sum_probs=141.0

Q ss_pred             CcceeEEEEeeeCCeEEEeeC--CCCCCCCCceEEEEECCCCceeEEEe-cCCcee---------EEEEe--cCceE-EE
Q 015650          127 GGGIGVVEMLFRCNILALVGG--GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVR---------SVKLR--RDRII-VV  191 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~--~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~---------~~~~~--~~~~~-~~  191 (403)
                      +|...+..+.++++..+++..  +.+     +...||....+.....+. +...+.         ...|+  ||+.. ++
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEA-----GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTT-----TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             hcCCccceeEEcCCeEEEEecCcccC-----CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            466788899999999998887  556     889999865454455554 555555         56666  99887 66


Q ss_pred             -e---cCeEEEEEcC--C-ceeeeEeec-----cCCCceeEEEeeCCCeEEEEeeC-------CccCeEEEEEccC----
Q 015650          192 -L---EQKIFVYNFA--D-LKLLHQIET-----IANPKGLCAVSQGVGSLVLVCPG-------LQKGQVRVEHYAS----  248 (403)
Q Consensus       192 -~---d~~i~i~d~~--~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g-------~~d~~i~v~d~~~----  248 (403)
                       .   +..|+++++.  . ++ ...+..     +...+..++|+|+++.++++...       .....|++||+.+    
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             EEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence             2   4567777765  2 33 444444     34456789999999976665411       1115899999998    


Q ss_pred             --CceeEEe-ecCCceEEEEEcCCCCEEEEEeCCC--------cEEEEEEcC-CCc--EEEEEecCCCcccEEEEEeCCC
Q 015650          249 --KRTKFIM-AHDSRIACFALTQDGQLLATSSTKG--------TLVRIFNTL-DGT--LLQEVRRGADRAEIYSLAFSSN  314 (403)
Q Consensus       249 --~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~dg--------~~i~iwd~~-~~~--~~~~~~~~~~~~~v~~l~~s~d  314 (403)
                        +....+. .+...+..++|+|||++|+.++.++        . |++||+. +++  ....+..+ +...+..+.|+||
T Consensus       175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~-i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spd  252 (662)
T 3azo_A          175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE-LKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPD  252 (662)
T ss_dssp             CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE-EEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTT
T ss_pred             cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE-EEEEEECCCCcccccEEeCCC-CCceEcceEECCC
Confidence              7777777 6677888999999999999877553        5 9999998 561  33334322 4578999999999


Q ss_pred             CCEEEEEeCCCcEEEEEee
Q 015650          315 AQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       315 ~~~l~s~~~dg~v~iwd~~  333 (403)
                      |++++++..++..+||.++
T Consensus       253 g~l~~~~~~~~~~~l~~~~  271 (662)
T 3azo_A          253 GSLIVATDRTGWWNLHRVD  271 (662)
T ss_dssp             SCEEEEECTTSSCEEEEEC
T ss_pred             CeEEEEECCCCCeEEEEEE
Confidence            9988888888854444443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=1.4e-14  Score=126.24  Aligned_cols=224  Identities=10%  Similarity=0.062  Sum_probs=158.7

Q ss_pred             cceeEEEEeeeCCeE-EEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcC
Q 015650          128 GGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~  202 (403)
                      +......+.|++++. .++++..+     +.|..|+..++  ...+. +...+.++++++++.+++.   ++.|.+||..
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             CCccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            344567888998875 55555555     89999998877  55565 6677899999999988773   4689999998


Q ss_pred             CceeeeEeecc----CCCceeEEEeeCCCeEEEEee--CC-------------ccCeEEEEEccCCceeEEeecCCceEE
Q 015650          203 DLKLLHQIETI----ANPKGLCAVSQGVGSLVLVCP--GL-------------QKGQVRVEHYASKRTKFIMAHDSRIAC  263 (403)
Q Consensus       203 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--g~-------------~d~~i~v~d~~~~~~~~~~~~~~~i~~  263 (403)
                      +++........    ...+..++++++++ ++++..  |.             ..+.|..++.. +....+..+......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            87654433221    22345688888875 333211  11             12456666655 556666666777899


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEEcC-CCcE---EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          264 FALTQDGQLLATSSTKGTLVRIFNTL-DGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       264 ~~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~---~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      ++|+|+|++|++.+.++. |++||+. +++.   ...+ . .+...+.+|+++++|+++++.  ++.|.+|+.+ ++.  
T Consensus       177 i~~s~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~--  248 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE--  248 (296)
T ss_dssp             EEECTTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE--
T ss_pred             EEECCCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE--
Confidence            999999999977777788 9999987 5554   3344 2 244567889999999977666  7889999975 431  


Q ss_pred             CCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEe-ccCCCEEEEEccCC
Q 015650          340 RSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF-GHQKNTVVILGMDG  402 (403)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-s~d~~~l~~~~~dG  402 (403)
                                                       +..+..+.. ++.++| +|+++.|++++.+|
T Consensus       249 ---------------------------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          249 ---------------------------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             ---------------------------------EEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             ---------------------------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence                                             334556666 889999 68999999988765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=1.4e-14  Score=141.85  Aligned_cols=240  Identities=7%  Similarity=-0.061  Sum_probs=154.1

Q ss_pred             CCCCEEEEEc-CCc---EEEEEcC--CCeeEEEE---ecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650           95 QDHGCFAAGT-DHG---FRIYNCD--PFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (403)
Q Consensus        95 ~d~~~l~~~~-~~~---i~iw~~~--~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~  165 (403)
                      |+|++++... +.+   -.||..+  .++.....   .+..++...+..+.|+||+..++.+..+.......|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8898887654 222   2556553  33322111   2222344578899999998877644332000013899999999


Q ss_pred             CceeEEEecCCceeEEEEecCceEEE---ecCe----------------EEEEEcCCceee--eEeec--cCCCceeEEE
Q 015650          166 SRCIGELSFRSEVRSVKLRRDRIIVV---LEQK----------------IFVYNFADLKLL--HQIET--IANPKGLCAV  222 (403)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~----------------i~i~d~~~~~~~--~~~~~--~~~~~~~~~~  222 (403)
                      ++.+........+..++|+|||+.++   .++.                |++|++.+++..  ..+..  +......+.+
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            98776433333477899999998777   2333                999999886532  22222  2334567899


Q ss_pred             eeCCCeEEEEeeCCc--cCeEEEEEccC------C--ceeEEeecCCceEEEEEcCCCCEEEEEeCC----CcEEEEEEc
Q 015650          223 SQGVGSLVLVCPGLQ--KGQVRVEHYAS------K--RTKFIMAHDSRIACFALTQDGQLLATSSTK----GTLVRIFNT  288 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~--d~~i~v~d~~~------~--~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d----g~~i~iwd~  288 (403)
                      +++++.+++......  +..|++||+.+      +  ....+..+...+.. .|+|+|+.|+..+..    +. |.+||+
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~-l~~~d~  318 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR-LINIDF  318 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE-EEEEET
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE-EEEEeC
Confidence            999997776653111  57899999986      4  46667777666655 488999988776552    35 999999


Q ss_pred             CCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE--EeecCC
Q 015650          289 LDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF--NLKVNS  336 (403)
Q Consensus       289 ~~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw--d~~~~~  336 (403)
                      .++.  ....+..+.....+..+.|++++.++++...++..+||  ++.+++
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA  370 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence            8764  22344432222368889999888888888888865555  544444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=2e-14  Score=128.27  Aligned_cols=226  Identities=14%  Similarity=0.100  Sum_probs=149.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcC----Cc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCC-C------
Q 015650           86 PTLLHISFNQDHGCFAAGTD----HG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-Q------  152 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~----~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~-~------  152 (403)
                      ..+..++|+|||+.|+...+    +.  |.+|++.+++....  ..  ... +..+.|+|++..++....+. .      
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l--~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI--LE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE--EE--ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE--Ec--CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence            46788999999999988762    22  77778877654422  22  223 88899999886555443110 0      


Q ss_pred             ---------------CCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e--c------C-eEEEEEcCCceee
Q 015650          153 ---------------YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--E------Q-KIFVYNFADLKLL  207 (403)
Q Consensus       153 ---------------~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--d------~-~i~i~d~~~~~~~  207 (403)
                                     .....|++||+.+++.+..+... .+..+.|+||+ +++ .  +      . ...+|.+.+++. 
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-  210 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-  210 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-
Confidence                           00157999999988774555444 88899999999 555 2  1      2 334444335543 


Q ss_pred             eEeeccCCCceeEEEeeCCCeEEEEeeCC-----ccCeEEEEEccCCceeEE-eecCCceEE-EEEcCCCCEEEEEeCCC
Q 015650          208 HQIETIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHYASKRTKFI-MAHDSRIAC-FALTQDGQLLATSSTKG  280 (403)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~d~~i~v~d~~~~~~~~~-~~~~~~i~~-~~~sp~g~~l~s~~~dg  280 (403)
                      ..+..+ ..  ...++|+++.++++....     ....|.+||  ++....+ ..+...+.. +.|+ |+ ++++++.++
T Consensus       211 ~~l~~~-~~--~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          211 EKMFEK-VS--FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             EEEEEE-ES--EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             EEeccC-cc--eeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            333333 33  334489998776654221     135788888  4444443 345677886 9999 88 888999999


Q ss_pred             cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE-EEEEee
Q 015650          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV-HVFNLK  333 (403)
Q Consensus       281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v-~iwd~~  333 (403)
                      . ++|| +.+++....+.   +...|.+++|+|  .++++++.++.. .||.++
T Consensus       284 ~-~~l~-~~~g~~~~~~~---~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          284 S-VNLY-IWDGEIKPIAK---GRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             E-EEEE-EESSSEEEEEC---SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             c-EEEE-EcCCceEEEec---CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            8 9999 87676644433   457899999999  677777777665 888887

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=9.5e-13  Score=114.54  Aligned_cols=232  Identities=9%  Similarity=-0.013  Sum_probs=161.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      .+...+.++++.++|+++++.. +++|.+|+.. +... ...+. .....+..+.+.+++..+++...+     +.|..|
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~   83 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLP-TPDAKVMCLTISSDGEVWFTENAA-----NKIGRI   83 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCC-cccCceeeEEECCCCCEEEeCCCC-----CeEEEE
Confidence            3456799999999999888776 4569999987 4322 22222 244678889998888777776655     789999


Q ss_pred             ECCCCceeEEEe---cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeE-eeccCCCceeEEEeeCCCeEEEEee
Q 015650          162 DDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       162 d~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      +.. ++ +..+.   ....+..+++.+++.+.+.   ++.|.+||. +++.... ..........+++.+++ .++++. 
T Consensus        84 ~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~-  158 (299)
T 2z2n_A           84 TKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTE-  158 (299)
T ss_dssp             CTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEE-
T ss_pred             CCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEe-
Confidence            975 43 23333   3457889999999887763   568999998 5544322 22223445677777766 344443 


Q ss_pred             CCccCeEEEEEccCCceeEE--eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          235 GLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~~~~--~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                       ..++.|..||. ++....+  ..+...+..++++++|+++++...++. |.+||. +++... +........+.+++++
T Consensus       159 -~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~  233 (299)
T 2z2n_A          159 -NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEITE-FKIPTPNARPHAITAG  233 (299)
T ss_dssp             -TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEEC
T ss_pred             -CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEEE-EECCCCCCCceeEEEC
Confidence             34678999998 5555443  233456889999999997776666777 999998 766443 4322234678999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEe
Q 015650          313 SNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd~  332 (403)
                      ++|+++++...++.|..||.
T Consensus       234 ~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          234 AGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             STTCEEEEETTTTEEEEEET
T ss_pred             CCCCEEEeccCCceEEEECC
Confidence            99997777667889999997

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=3.3e-14  Score=122.07  Aligned_cols=235  Identities=9%  Similarity=-0.045  Sum_probs=160.8

Q ss_pred             CeEEEEEcCCCCEEE-EEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC
Q 015650           87 TLLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~-~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      ...+++++++|++++ +.. +++|.+|+..+....   .+...+...+..+++.+++.++++.. +     +.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLPFNGLYQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---ECCCCSCCSCCCEEECTTCCEEEEET-T-----TEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---eEeeCCcCCcceeEECCCCCEEEEcC-C-----CEEEEEeCC
Confidence            678999999999777 434 455999986544322   12112334567788888776666655 5     899999976


Q ss_pred             CCceeEEEe--cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC
Q 015650          165 QSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (403)
Q Consensus       165 ~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (403)
                      .... ..+.  ....+..+++.+++.+++.   ++.|.+|+..+................++++++++ ++++.  ..++
T Consensus        96 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~  171 (270)
T 1rwi_B           96 SNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNN  171 (270)
T ss_dssp             CSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEE--GGGT
T ss_pred             CceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEE--CCCC
Confidence            5543 3333  2357889999999887663   57899998655433222222223456788888775 55543  3467


Q ss_pred             eEEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 015650          240 QVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (403)
Q Consensus       240 ~i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l  318 (403)
                      .|.+||.......... .+...+.+++++++|.++++...++. |.+||........ +.. .+...+.+++++++|+++
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEE
T ss_pred             EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEE
Confidence            9999998876554432 23366899999999987777777888 9999986654432 221 123568999999999988


Q ss_pred             EEEeCCCcEEEEEeecCCC
Q 015650          319 AVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       319 ~s~~~dg~v~iwd~~~~~~  337 (403)
                      ++...++.|++|++...+.
T Consensus       249 v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          249 VADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEGGGTEEEEECCCGGGS
T ss_pred             EEECCCCEEEEEcCCCccc
Confidence            8888999999999988774

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=6.7e-14  Score=123.82  Aligned_cols=234  Identities=9%  Similarity=0.040  Sum_probs=162.6

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC
Q 015650           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      .....+.+. +++++++.. ++.|.+||..+++..  ..+.  .......+++++++.++++...+     +.|.+||..
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~--~~i~--~~~~p~~i~~~~~g~lyv~~~~~-----~~v~~iD~~  113 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV--GRIT--GFTSPRYIHFLSDEKAYVTQIWD-----YRIFIINPK  113 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE--EEEE--CCSSEEEEEEEETTEEEEEEBSC-----SEEEEEETT
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE--EEcC--CCCCCcEEEEeCCCeEEEEECCC-----CeEEEEECC
Confidence            345777774 344555554 556999999888765  3443  33556778887777666666455     899999999


Q ss_pred             CCceeEEEecCC------ceeEEEEecCceEEEe----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650          165 QSRCIGELSFRS------EVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       165 ~~~~~~~~~~~~------~i~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      +++....+....      ....+++ .++.+++.    ++.|.++|+.+++.+..+.... ....++++++++ +++++.
T Consensus       114 t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~-l~v~~~  190 (328)
T 3dsm_A          114 TYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNK-MWTITD  190 (328)
T ss_dssp             TTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSE-EEEEBC
T ss_pred             CCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCC-EEEEEC
Confidence            999888887433      5667888 44554442    6789999999998888876543 335678888765 555543


Q ss_pred             CCc--------cCeEEEEEccCCcee-EEeec-CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc
Q 015650          235 GLQ--------KGQVRVEHYASKRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (403)
Q Consensus       235 g~~--------d~~i~v~d~~~~~~~-~~~~~-~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (403)
                      +..        .+.|.++|..+.++. .+... ......++|+|++++|+++..  . |.+||..+++............
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~~~~  267 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEFRDT  267 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCCCSS
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecCCCC
Confidence            311        278999999886654 33322 346899999999999988765  7 9999998887632111110135


Q ss_pred             cEEEEEeCC-CCCEEEEE----eCCCcEEEEEeecCC
Q 015650          305 EIYSLAFSS-NAQWLAVS----SDKGTVHVFNLKVNS  336 (403)
Q Consensus       305 ~v~~l~~s~-d~~~l~s~----~~dg~v~iwd~~~~~  336 (403)
                      ....++++| ++.++++.    ..++.|.+||.+ ++
T Consensus       268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            688999999 55555665    578899999998 66

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.66  E-value=2.1e-14  Score=140.39  Aligned_cols=232  Identities=9%  Similarity=0.002  Sum_probs=151.9

Q ss_pred             cCCCCEEEEEc-CC---cEEEEEcC--CCeeEEEEe---cccCcceeEEEEeeeCCeEEEe-----eCCCCCCCCCceEE
Q 015650           94 NQDHGCFAAGT-DH---GFRIYNCD--PFREIFRRD---FERGGGIGVVEMLFRCNILALV-----GGGPDPQYPLNKVM  159 (403)
Q Consensus        94 s~d~~~l~~~~-~~---~i~iw~~~--~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~-----s~~~d~~~~~~~i~  159 (403)
                      +|+|++++... +.   .-.||...  .++......   +..+|...+..+.|+||+..++     +++.+     ..|+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~-----~~i~  150 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE-----AVLH  150 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC-----CEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce-----EEEE
Confidence            37898887665 32   24555543  333222221   1124556788999999998888     66655     7999


Q ss_pred             EEECCCCcee-EEEecCCceeEEEEecCceEEE---ecCe-------------EEEEEcCCcee----eeEeeccCCCce
Q 015650          160 IWDDHQSRCI-GELSFRSEVRSVKLRRDRIIVV---LEQK-------------IFVYNFADLKL----LHQIETIANPKG  218 (403)
Q Consensus       160 iwd~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~---~d~~-------------i~i~d~~~~~~----~~~~~~~~~~~~  218 (403)
                      +||+.+++.+ ...........++|+|||+.++   .|..             |++|++.+++.    +.....+...+.
T Consensus       151 v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~  230 (695)
T 2bkl_A          151 VIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL  230 (695)
T ss_dssp             EEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred             EEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence            9999999865 2111111226899999998777   2443             99999988752    222222334567


Q ss_pred             eEEEeeCCCeEEEEeeCC-ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC----CCcEEEEEEcCCCcE
Q 015650          219 LCAVSQGVGSLVLVCPGL-QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDGTL  293 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~-~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~----dg~~i~iwd~~~~~~  293 (403)
                      .+.++++++.+++..... ....|.+|+..++....+..+...+....+ ++|. |+..+.    ++. |.+||+.+++.
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~-l~~~d~~~~~~  307 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQR-VFEVDPAKPAR  307 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCE-EEEEBTTBCSG
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCE-EEEEeCCCCCc
Confidence            889999998766654221 123677777666677777777777777767 6666 544443    467 99999987653


Q ss_pred             --EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          294 --LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       294 --~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                        ...+..+.....+..++|+ ++.++++...|+..+||.++.
T Consensus       308 ~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~  349 (695)
T 2bkl_A          308 ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL  349 (695)
T ss_dssp             GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence              2333332124568889998 777888889999999998873

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.65  E-value=6.7e-13  Score=117.66  Aligned_cols=245  Identities=9%  Similarity=-0.004  Sum_probs=163.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      +..+...+.+++|+++|++++++. +++|.+|+.++++....  .. .+...+..+.+++++.++++...+. ...+.|.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~--~~-~~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~  115 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--FV-SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIF  115 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EE-CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEE
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE--ee-CCCCCcceEEECCCCcEEEEeCCCC-CCCceEE
Confidence            445566789999999999888877 45599999877654321  21 2456788999999887666543210 0013799


Q ss_pred             EEECCCCceeEEEe---cCCceeEEEEecCceEEEec---------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          160 IWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       160 iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      +||..+++....+.   ....+..+++++++.+++.+         +.|+.+|..+++... +.........++++++++
T Consensus       116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEK  194 (333)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSS
T ss_pred             EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCC
Confidence            99988776553433   34568899999999877732         356667665544333 322333457788999987


Q ss_pred             eEEEEeeCCccCeEEEEEccC--CceeEE-----eec--CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          228 SLVLVCPGLQKGQVRVEHYAS--KRTKFI-----MAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~--~~~~~~-----~~~--~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      .++++.  ..++.|.+||+..  .....+     ...  ...+..++++++|+++++...++. |.+||. +++.+..+.
T Consensus       195 ~l~v~~--~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~  270 (333)
T 2dg1_A          195 VLWVTE--TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQIL  270 (333)
T ss_dssp             EEEEEE--GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEE
T ss_pred             EEEEEe--CCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEE
Confidence            766654  3568999999963  222211     111  136788999999998887777788 999997 677777776


Q ss_pred             cCCC----cccEEEEEeCCCCCEEEEEeCCC----cEEEEEeec
Q 015650          299 RGAD----RAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKV  334 (403)
Q Consensus       299 ~~~~----~~~v~~l~~s~d~~~l~s~~~dg----~v~iwd~~~  334 (403)
                      .+..    ...+.+++|+||++.|+.++.++    .-.||.++.
T Consensus       271 ~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          271 IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             cCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence            4211    11588999999988777665543    345555543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=6.4e-14  Score=120.44  Aligned_cols=186  Identities=20%  Similarity=0.179  Sum_probs=143.0

Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cC-CceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccC-CC
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR-SEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIA-NP  216 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~-~~  216 (403)
                      +..+++++.+     +.|.+||.++|+.+.++. +. ..+.++.+.|+|.+++ .++.|+.||. +++.+..+.... ..
T Consensus         5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CEEEEECTTC-----SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            4566777777     999999999999999998 33 4789999999999888 5788999998 899999887642 34


Q ss_pred             ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee------cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (403)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (403)
                      +..+.+.++++.++... + .++.|..+|...+.+..+..      +......+++.++|++|++...++. |..||.. 
T Consensus        79 ~~~~~~~~dG~~lv~~~-~-~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~-  154 (276)
T 3no2_A           79 MQTARILPDGNALVAWC-G-HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN-  154 (276)
T ss_dssp             EEEEEECTTSCEEEEEE-S-TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT-
T ss_pred             ccccEECCCCCEEEEec-C-CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC-
Confidence            56677777776433222 2 25677777775555544431      2224556778999999999999999 9999987 


Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      |+.+.++...   ..+.++.+.++|.+++++..++.|..+|.++++.+.
T Consensus       155 G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w  200 (276)
T 3no2_A          155 GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR  200 (276)
T ss_dssp             SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred             CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence            9999988853   455677888999999998888899999999888543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=4.2e-15  Score=145.25  Aligned_cols=246  Identities=9%  Similarity=-0.042  Sum_probs=162.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-----C-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC---
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT-----D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ---  152 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~-----~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~---  152 (403)
                      .+|...+..++|||||++||.+.     + ..|++||+++++......+.   ......+.|++++..++.+..+..   
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~---~~~~~~~~wspDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE---GGKYATPKWTPDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS---CCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC---cccccceEEecCCCEEEEEEecCCCCC
Confidence            34566789999999999998543     2 23999999887643011121   111257889999877776655410   


Q ss_pred             -----CCCceEEEEECCCCce--eEEEe---cCCceeEEEEecCceEEE---ecC----eEEEEEcCCceeeeEeeccCC
Q 015650          153 -----YPLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVV---LEQ----KIFVYNFADLKLLHQIETIAN  215 (403)
Q Consensus       153 -----~~~~~i~iwd~~~~~~--~~~~~---~~~~i~~~~~~~~~~~~~---~d~----~i~i~d~~~~~~~~~~~~~~~  215 (403)
                           .....|++|++.+++.  ...+.   +...+..+.|+|||++++   .++    .|++|+..+++ ...+..+..
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~  272 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG  272 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC
Confidence                 0013499999988763  22232   345788999999998777   344    67777765554 344444444


Q ss_pred             CceeEEEeeCCCeEEEEee-CCccCeEEEEEccCCc---eeEEeec--CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          216 PKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKR---TKFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~-g~~d~~i~v~d~~~~~---~~~~~~~--~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      ......+ ++++ +++.+. +..++.|.+||+.++.   ...+..+  ...+..++|+ ++.++++...|+. .+||.+.
T Consensus       273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~  348 (695)
T 2bkl_A          273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVAT  348 (695)
T ss_dssp             CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEE
T ss_pred             ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEe
Confidence            4444444 6666 665542 1136889999997754   2444443  4567888888 7778888888887 7777554


Q ss_pred             -CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe----CCCcEEEEEeecCC
Q 015650          290 -DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS----DKGTVHVFNLKVNS  336 (403)
Q Consensus       290 -~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~----~dg~v~iwd~~~~~  336 (403)
                       +++.+..+..+ ....+..+.++|+++.|+...    ..++|++||+.+++
T Consensus       349 ~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          349 LKGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TTCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             46666666532 246788899999998776333    35789999998876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.62  E-value=1.4e-12  Score=113.71  Aligned_cols=229  Identities=13%  Similarity=0.098  Sum_probs=153.6

Q ss_pred             eeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCCceee
Q 015650          130 IGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLL  207 (403)
Q Consensus       130 ~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~  207 (403)
                      .-.-...|++ ++.++++....     +.|+.||..+++. ..+.....+.++++++++.+++ .++.|.+||..+++..
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPA-----KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAV   86 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEE
T ss_pred             ccccCCeEECCCCEEEEEECCC-----CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEE
Confidence            3445667777 34555555555     8999999887764 4555678899999999998776 6789999999887654


Q ss_pred             eEeecc----CCCceeEEEeeCCCeEEEEeeCCc-------cCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEE
Q 015650          208 HQIETI----ANPKGLCAVSQGVGSLVLVCPGLQ-------KGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLAT  275 (403)
Q Consensus       208 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~-------d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s  275 (403)
                      ......    ......+++.++++ +++...+..       .....||.+.. +....+..+......++|+||++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence            332221    12245678888776 455432211       12334555443 344444444556789999999997754


Q ss_pred             -EeCCCcEEEEEEc--CCCcEE--EEEec-CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCC
Q 015650          276 -SSTKGTLVRIFNT--LDGTLL--QEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP  349 (403)
Q Consensus       276 -~~~dg~~i~iwd~--~~~~~~--~~~~~-~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  349 (403)
                       .+.++. |.+||+  .++...  +.+.. ..+......++++++|+++++....+.|..||.++++.            
T Consensus       166 ~~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~------------  232 (297)
T 3g4e_A          166 IDSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR------------  232 (297)
T ss_dssp             EEGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE------------
T ss_pred             ecCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE------------
Confidence             455677 999987  455432  22211 11235678999999999888887888999999988773            


Q ss_pred             CCcccccccccccccceeeeeeeeEEEEEeCCCceEEEec-cCCCEEEEEccC
Q 015650          350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG-HQKNTVVILGMD  401 (403)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs-~d~~~l~~~~~d  401 (403)
                                             ...+..+...+++++|+ ||++.|++++..
T Consensus       233 -----------------------~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          233 -----------------------LQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             -----------------------EEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             -----------------------EEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence                                   23355666678999998 899988777653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.61  E-value=1.4e-12  Score=114.45  Aligned_cols=238  Identities=10%  Similarity=0.048  Sum_probs=162.0

Q ss_pred             CCCCeEEEEEcCCCCEEEE-------Ec-CCcEEEEEcCCCeeEEEEecc--cCcceeEEEEeeeCC-eEEEeeCCCCCC
Q 015650           84 PPPTLLHISFNQDHGCFAA-------GT-DHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN-ILALVGGGPDPQ  152 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~-------~~-~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~~~s~~~d~~  152 (403)
                      .-....+++|+++|.++++       +. +++|.+|+..+++..... ..  .++...+..+.++++ +..+++...   
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~i~~~~~~g~l~v~~~~---   91 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-KPEVNGYGGIPAGCQCDRDANQLFVADMR---   91 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE-CCEETTEECCEEEEEECSSSSEEEEEETT---
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-ecccCCCCCCCceEEEecCCCcEEEEECC---
Confidence            3345689999999998888       33 666999997766543211 10  023456788999988 776665543   


Q ss_pred             CCCceEEEEECCCCceeEE-Ee-----cCCceeEEEEecCceEEEec------------------CeEEEEEcCCceeee
Q 015650          153 YPLNKVMIWDDHQSRCIGE-LS-----FRSEVRSVKLRRDRIIVVLE------------------QKIFVYNFADLKLLH  208 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~-~~-----~~~~i~~~~~~~~~~~~~~d------------------~~i~i~d~~~~~~~~  208 (403)
                         +.|.+||.. ++.... ..     ....+.++++.+++.+.+.+                  +.|..||.. ++...
T Consensus        92 ---~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (314)
T 1pjx_A           92 ---LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             ---TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             ---CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence               478999988 665433 22     12358899999999877732                  467777765 54433


Q ss_pred             EeeccCCCceeEEEe----eCCCeEEEEeeCCccCeEEEEEcc-CCce------eEEeecC-CceEEEEEcCCCCEEEEE
Q 015650          209 QIETIANPKGLCAVS----QGVGSLVLVCPGLQKGQVRVEHYA-SKRT------KFIMAHD-SRIACFALTQDGQLLATS  276 (403)
Q Consensus       209 ~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~d~~i~v~d~~-~~~~------~~~~~~~-~~i~~~~~sp~g~~l~s~  276 (403)
                      .. ........++++    ++++.++++.  ..++.|.+||.. .+..      ..+..+. ..+..++++++|+++++.
T Consensus       167 ~~-~~~~~~~~i~~~~~~d~dg~~l~v~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          167 VD-TAFQFPNGIAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EE-EEESSEEEEEEEECTTSCEEEEEEEE--TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             ec-cCCCCcceEEEecccCCCCCEEEEEE--CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence            32 223344678888    7776555553  356899999986 3332      1122232 567889999999988887


Q ss_pred             eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEE-EEeCCCcEEEEEeecCC
Q 015650          277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA-VSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       277 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~-s~~~dg~v~iwd~~~~~  336 (403)
                      ..++. |.+||..+++.+..+..  +...+.+++|+++|++|+ +...++.|..|++....
T Consensus       244 ~~~~~-i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          244 WGSSH-IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             ETTTE-EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             cCCCE-EEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            77888 99999887877666664  336799999999999555 44566889999987643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=2.3e-12  Score=110.77  Aligned_cols=211  Identities=12%  Similarity=0.045  Sum_probs=153.3

Q ss_pred             CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec
Q 015650           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (403)
Q Consensus        96 d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~  174 (403)
                      .+++|++++ ++.|.+||.++++.+......  ....+..+.+.+++.++++.  +     +.|..||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~pdG~ilvs~--~-----~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE--KGWECNSVAATKAGEILFSY--S-----KGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECC--TTCCCCEEEECTTSCEEEEC--B-----SEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC--ccCCCcCeEECCCCCEEEeC--C-----CCEEEECC-CCCEEEEEcC
Confidence            457788887 445999999888877544432  22456777888899888854  3     78999998 8999999883


Q ss_pred             --CCceeEEEEecCceEEEe----cCeEEEEEcCCceeeeEeeccC------CCceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650          175 --RSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (403)
Q Consensus       175 --~~~i~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (403)
                        ...+.++.+.++|.+++.    ++.|..+|. +++.+..+....      .....+++.++++.  +++ ...++.|.
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~--lv~-~~~~~~v~  149 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY--LVP-LFATSEVR  149 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE--EEE-ETTTTEEE
T ss_pred             CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE--EEE-ecCCCEEE
Confidence              357889999999998883    346777774 788777765321      12334566777663  333 24689999


Q ss_pred             EEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC----CcccEEEEEeCCCCCEE
Q 015650          243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA----DRAEIYSLAFSSNAQWL  318 (403)
Q Consensus       243 v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~----~~~~v~~l~~s~d~~~l  318 (403)
                      .||...+.+..+.. .....++.+.++|+++++++.++. |..+|..+|+.+.++....    ....+..++..++|.++
T Consensus       150 ~~d~~G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~  227 (276)
T 3no2_A          150 EIAPNGQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY  227 (276)
T ss_dssp             EECTTSCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred             EECCCCCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence            99998544444443 345667888999999998888888 9999999999999887421    11237889999999988


Q ss_pred             EEEe
Q 015650          319 AVSS  322 (403)
Q Consensus       319 ~s~~  322 (403)
                      ++..
T Consensus       228 v~~~  231 (276)
T 3no2_A          228 ICNW  231 (276)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.59  E-value=3.1e-12  Score=114.80  Aligned_cols=233  Identities=11%  Similarity=0.006  Sum_probs=158.5

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEEecc-cC---cceeEEEEeeeCCeEEEeeCCC--CCC
Q 015650           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE-RG---GGIGVVEMLFRCNILALVGGGP--DPQ  152 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~~s~~~--d~~  152 (403)
                      .++|+|||++|.++.           ++.|.+||..+.+......+. ..   .......+.+++++.+++.+..  +  
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~--  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG--  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC--
Confidence            899999999998874           345999999877655332221 00   0123347889999887776542  4  


Q ss_pred             CCCceEEEEECCCCceeEE-EecCCceeEEEEecCce--EEE--ecCeEEEEEcCCceeeeEee-----ccCCCc-eeEE
Q 015650          153 YPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLKLLHQIE-----TIANPK-GLCA  221 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~-~~~~~~i~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~-----~~~~~~-~~~~  221 (403)
                         +.|.++| .+++.+.. +.....   +.+.+++.  ++.  .||++.++|. +++......     ....++ ....
T Consensus       148 ---~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~  219 (373)
T 2mad_H          148 ---PAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             ---CeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence               7899999 99998888 664333   44455542  233  5899999999 876663322     111111 1235


Q ss_pred             EeeCCCeEEEEeeCCccCeEEEEEccCCceeE---Eee----------cCCceEEEEEcCCCCEEEEEeC----------
Q 015650          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMA----------HDSRIACFALTQDGQLLATSST----------  278 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~---~~~----------~~~~i~~~~~sp~g~~l~s~~~----------  278 (403)
                      +.+++..+++++   ..+.+.+.|+.......   +..          .......+.++|+++.|+.+..          
T Consensus       220 ~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~  296 (373)
T 2mad_H          220 QANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAA  296 (373)
T ss_pred             eEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCC
Confidence            566666666654   45789999987643221   111          1123445789999998887653          


Q ss_pred             CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEe-CCCcEEEEEeecCCCCC
Q 015650          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~-~dg~v~iwd~~~~~~~~  339 (403)
                      .+. |.++|+.+++.+..+..+   ....+++|+|||+ +|+++. .++.|.+||+.+++.+.
T Consensus       297 ~~~-V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          297 AKE-VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             CCe-EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence            246 999999999999999743   4689999999999 777776 58999999999998643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=3e-11  Score=105.02  Aligned_cols=231  Identities=9%  Similarity=-0.022  Sum_probs=160.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      ....+.+|++.++|+++++.. +++|.+|+.. ++.. ...+. .....+..+.+.+++.++++...+     +.|..||
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~~~d   89 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVP-TPDAKVMCLIVSSLGDIWFTENGA-----NKIGKLS   89 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECC-CCCCcceeEEECCCCCEEEEecCC-----CeEEEEC
Confidence            346789999999999888775 5569999977 3332 22333 334678888898888777766555     7899999


Q ss_pred             CCCCceeEEEe---cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeE-eeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          163 DHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       163 ~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      .. ++. ..+.   ....+..+++.+++.+.+.   ++.|..||.. ++.... +.........+++.++++ ++++.  
T Consensus        90 ~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~--  163 (300)
T 2qc5_A           90 KK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTE--  163 (300)
T ss_dssp             TT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEE--
T ss_pred             CC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEe--
Confidence            77 554 3333   3467889999998887763   5789999987 554322 222234456777877765 55543  


Q ss_pred             CccCeEEEEEccCCceeEEe--ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          236 LQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      ..++.|..+|. .+....+.  .+...+..++++++|+++++....+. |.+||. +++...... ......+.++++++
T Consensus       164 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~-~~~~~~~~~i~~d~  239 (300)
T 2qc5_A          164 NQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISEYDI-PTPNARPHAITAGK  239 (300)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEEEEC-SSTTCCEEEEEECS
T ss_pred             cCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEEEEC-CCCCCCceEEEECC
Confidence            34678999998 44443333  23456889999999987776666777 999997 555543322 12345789999999


Q ss_pred             CCCEEEEEeCCCcEEEEEe
Q 015650          314 NAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~  332 (403)
                      +|+++++...++.|..|+.
T Consensus       240 ~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          240 NSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TTCEEEEETTTTEEEEECT
T ss_pred             CCCEEEeccCCCeEEEECC
Confidence            9997777667789999987

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.59  E-value=1.2e-13  Score=135.91  Aligned_cols=244  Identities=10%  Similarity=0.026  Sum_probs=158.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC----
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY----  153 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~----  153 (403)
                      |...+..++|||||++||.+.+.      .|++||+++++.... .+   +...+..+.|+++ ..++.+..+...    
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~---~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL---KWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE---EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC---CCceeccEEEECC-CEEEEEEecCcccccc
Confidence            44468899999999999887632      399999998775421 12   2222346788888 554444333100    


Q ss_pred             -----CCceEEEEECCCCce--eEEEe---cCCceeEEEEecCceEEE---ec-----CeEEEEEcCCc--eeeeEeecc
Q 015650          154 -----PLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVV---LE-----QKIFVYNFADL--KLLHQIETI  213 (403)
Q Consensus       154 -----~~~~i~iwd~~~~~~--~~~~~---~~~~i~~~~~~~~~~~~~---~d-----~~i~i~d~~~~--~~~~~~~~~  213 (403)
                           ....|++|++.+++.  ...+.   +...+..+.|+|||++++   .+     ..|++||+.++  +....+..+
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~  315 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD  315 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence                 013599999987753  22333   223588999999998777   23     38999999876  314455444


Q ss_pred             CCCceeEEEeeCCCeEEEEeeC-CccCeEEEEEccCC--ceeEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          214 ANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASK--RTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~v~d~~~~--~~~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      ....... +.++++.+++.+.. ..++.|.+||+.+.  ....+ ..+...+..+.++ ++.++++...|+. .+||.+.
T Consensus       316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~  392 (741)
T 1yr2_A          316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFD  392 (741)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEe
Confidence            4444333 45888888777521 13567999998873  34444 3444556678887 5667778888887 6666543


Q ss_pred             -CCcEEEEEecCCCcccEEEEEeCCCCCEEEEE----eCCCcEEEEEeecCC
Q 015650          290 -DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS----SDKGTVHVFNLKVNS  336 (403)
Q Consensus       290 -~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~----~~dg~v~iwd~~~~~  336 (403)
                       +++.+..+..+ +...+..+.++|+++.|+..    ...++|++||+.+++
T Consensus       393 ~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          393 LDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             TTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             46666666532 34678999999999866533    245789999998766

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=4.7e-12  Score=119.43  Aligned_cols=233  Identities=14%  Similarity=0.060  Sum_probs=160.0

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CcEEEEEcC--CCeeEEEEecccCcceeEEEEeee----CCeEEEee-CCCCCCCCCceE
Q 015650           87 TLLHISFNQDHGCFAAGTD-HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFR----CNILALVG-GGPDPQYPLNKV  158 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~-~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~s-~~~d~~~~~~~i  158 (403)
                      .+..+.|+|||++++++++ +.|.+||+.  +.+..  ..+.  .......+.++    +++.+++. ...+     +.|
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~--~G~~P~~ia~s~~~~pDGk~l~v~n~~~-----~~v  268 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIK--IGSEARSIETSKMEGWEDKYAIAGAYWP-----PQY  268 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEE--CCSEEEEEEECCSTTCTTTEEEEEEEET-----TEE
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--EEEe--cCCCCceeEEccccCCCCCEEEEEEccC-----CeE
Confidence            5678999999999888774 459999995  55444  4554  23345788888    57755444 3344     899


Q ss_pred             EEEECCCCceeEEEec------------CCceeEEEEecCceEEE----ecCeEEEEEcCCceeee--EeeccCCCceeE
Q 015650          159 MIWDDHQSRCIGELSF------------RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH--QIETIANPKGLC  220 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~~------------~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~  220 (403)
                      .++|..+.+.+..+..            ...+..+..++++..++    .+|.|.++|..+.+.+.  .+. .......+
T Consensus       269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~  347 (567)
T 1qks_A          269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDG  347 (567)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEE
T ss_pred             EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCc
Confidence            9999999998887761            12567888888765444    36899999987654322  222 22334567


Q ss_pred             EEeeCCCeEEEEeeCCccCeEEEEEccCCceeE-Eee-----cCCceEEEEEcCCCCEE-EEEe-CCCcEEEEEEcCC--
Q 015650          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMA-----HDSRIACFALTQDGQLL-ATSS-TKGTLVRIFNTLD--  290 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~-~~~-----~~~~i~~~~~sp~g~~l-~s~~-~dg~~i~iwd~~~--  290 (403)
                      .|+++++.++++.  ..++.|.++|+.++++.. +..     |.+.-..+ ++|++..+ +++. .++. |.++|..+  
T Consensus       348 ~~~pdgr~~~va~--~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~-Vsvid~~~~~  423 (567)
T 1qks_A          348 GLDGSHRYFITAA--NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDS-VALIGTDPEG  423 (567)
T ss_dssp             EECTTSCEEEEEE--GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTT
T ss_pred             eECCCCCEEEEEe--CCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCe-EEEecCCCCC
Confidence            8999988766665  357889999999876543 222     32211122 58875554 4443 3577 99999987  


Q ss_pred             -----CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC-------CCcEEEEEeecC
Q 015650          291 -----GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-------KGTVHVFNLKVN  335 (403)
Q Consensus       291 -----~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~-------dg~v~iwd~~~~  335 (403)
                           .+.++++...  ...-..|..+|++++|.+...       .+.|.++|+.+.
T Consensus       424 ~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          424 HPDNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CTTTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CccccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence                 6788888753  123345779999999988763       458999999987

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=4.7e-12  Score=115.23  Aligned_cols=236  Identities=10%  Similarity=0.089  Sum_probs=159.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      -.....|+|+++++++++... +.|++|+.+++.....  .. ..... . +++++++..++.++.+.   ...|.+|+.
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~--~~-~~~~~-~-ia~~~~g~~l~~~d~~~---~~~I~~~d~  201 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV--HP-GFKGG-K-PAVTKDKQRVYSIGWEG---THTVYVYMK  201 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE--EE-TCCBC-B-CEECTTSSEEEEEBSST---TCEEEEEEG
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe--ec-cCCCC-c-eeEecCCCcEEEEecCC---CceEEEEEc
Confidence            346889999999997777764 4599999887654422  22 12222 2 77777775555544430   028999998


Q ss_pred             CCCceeEEE----e-cCCceeEEEEec-CceEEEe--cCeEEEEEcCCceeeeE----eeccCCCc--eeEEEeeCCCeE
Q 015650          164 HQSRCIGEL----S-FRSEVRSVKLRR-DRIIVVL--EQKIFVYNFADLKLLHQ----IETIANPK--GLCAVSQGVGSL  229 (403)
Q Consensus       164 ~~~~~~~~~----~-~~~~i~~~~~~~-~~~~~~~--d~~i~i~d~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~  229 (403)
                      ..+.....+    . ....+.+++++| ++.+++.  ++.|+.||..++.....    ........  ..+++++++..+
T Consensus       202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            776554444    2 345678899999 6766663  57899999887653222    11122222  289999977777


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEeecC---------------CceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHD---------------SRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL  293 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~---------------~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~  293 (403)
                      |++-  ..++.|+.|+.... ...+.++.               .....++++++|+++++-. .++. |+.||+.+++.
T Consensus       282 yv~d--~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v  357 (409)
T 3hrp_A          282 YMSD--QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYV  357 (409)
T ss_dssp             EEEE--TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEE
T ss_pred             EEEe--CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEE
Confidence            7664  45788999987765 43443332               3478999999999777766 6777 99999888875


Q ss_pred             EEEEecCC-------------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          294 LQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       294 ~~~~~~~~-------------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      . ++.+..             .-.....|+++++|.++++-..++.|+.++++
T Consensus       358 ~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          358 S-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             E-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             E-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            4 333210             02458899999998888888888899988763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.55  E-value=2.3e-11  Score=109.13  Aligned_cols=251  Identities=7%  Similarity=-0.026  Sum_probs=163.5

Q ss_pred             cCCCCEEEEEcC--C----cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC----------CCCCCCCce
Q 015650           94 NQDHGCFAAGTD--H----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNK  157 (403)
Q Consensus        94 s~d~~~l~~~~~--~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~  157 (403)
                      .|+++++.+...  .    .|.+||..+++..  ..+.. ....  .+.+++++..++.+.          .+     +.
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~~i~~-g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~-----~~   98 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVNG-GFLP--NPVAAHSGSEFALASTSFSRIAKGKRT-----DY   98 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEE--EEecC-CCCC--CeEECCCCCEEEEEeccccccccCCCC-----Ce
Confidence            466665554431  1    6799998887754  45542 2222  888999987666553          24     68


Q ss_pred             EEEEECCCCceeEEEecC--------CceeEEEEecCceEEE-e----cCeEEEEEcCCceeeeE-eeccCCCceeEEEe
Q 015650          158 VMIWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQ-IETIANPKGLCAVS  223 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~  223 (403)
                      |.+||..+.+.+..+...        .....+.|+|||++++ .    ++.|.++| .+++.+.. +...    .++.+.
T Consensus        99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~~  173 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHIH  173 (373)
T ss_pred             EEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEEE
Confidence            999999999888877632        3356899999998877 2    36799999 99988777 5432    125566


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEccCCcee-EEe-----ecCCc-eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc--EE
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM-----AHDSR-IACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LL  294 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~~-----~~~~~-i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~--~~  294 (403)
                      ++++..+++.  +.||.+.++|. ++... ...     ....+ .....+.+++..++..+..+. +.+.|+.+..  .+
T Consensus       174 ~~~~~~~~~~--~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v~  249 (373)
T 2mad_H          174 PGAPSTFYLL--CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATNK  249 (373)
T ss_pred             eCCCceEEEE--cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceEe
Confidence            7777666654  36899999999 65443 111     11122 123456776665555557778 9999987553  22


Q ss_pred             EEEecC--------CCcccEEEEEeCCCCCEEEEEeC----------CCcEEEEEeecCCCCCCCCCCCCCCCCCccccc
Q 015650          295 QEVRRG--------ADRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (403)
Q Consensus       295 ~~~~~~--------~~~~~v~~l~~s~d~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (403)
                      ..+...        ........+.++||++.|+++..          .+.|.++|+.+.+.                   
T Consensus       250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v-------------------  310 (373)
T 2mad_H          250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-------------------  310 (373)
T ss_pred             eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE-------------------
Confidence            333210        01123445789999998877653          35799999988773                   


Q ss_pred             ccccccccceeeeeeeeEEEEEeCCCceEEEeccCCC-EEEEEc
Q 015650          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILG  399 (403)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~-~l~~~~  399 (403)
                                      +.++.. .+....++|+|||+ .++++.
T Consensus       311 ----------------v~~i~~-g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          311 ----------------SSQISL-GHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ----------------EEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence                            223332 23578899999999 677766

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=1.3e-11  Score=109.05  Aligned_cols=223  Identities=10%  Similarity=-0.003  Sum_probs=145.5

Q ss_pred             EEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEe
Q 015650          133 VEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI  210 (403)
Q Consensus       133 ~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~  210 (403)
                      ....|+++ +..+++...+     +.|..||..+++. ..+.....+.++.+.+++.+++ .+..|++||..+++.....
T Consensus        52 egp~~~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILE-----RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGG-----TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             cCCeEeCCCCEEEEEECCC-----CEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEe
Confidence            34567774 4444554445     8899999887654 3455567899999999998777 5667999999887654322


Q ss_pred             ecc----CCCceeEEEeeCCCeEEEEeeCC----ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEe-CCCc
Q 015650          211 ETI----ANPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGT  281 (403)
Q Consensus       211 ~~~----~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~  281 (403)
                      ...    ...+..++++++++ +++...+.    ..+.|..++  .+....+..+......++|+|||+.|+.+. .++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            211    12355678888775 44443211    124555566  455544444445678999999999776554 4567


Q ss_pred             EEEEEEcC--CC-cE--EEEEec-CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccc
Q 015650          282 LVRIFNTL--DG-TL--LQEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS  355 (403)
Q Consensus       282 ~i~iwd~~--~~-~~--~~~~~~-~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (403)
                       |.+||+.  ++ +.  ...+.. ......+..++++++|.++++...++.|.+|+. +++.                  
T Consensus       203 -I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~------------------  262 (326)
T 2ghs_A          203 -LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH------------------  262 (326)
T ss_dssp             -EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE------------------
T ss_pred             -EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE------------------
Confidence             9999985  55 31  112211 112345788999999998877767788999987 3431                  


Q ss_pred             cccccccccceeeeeeeeEEEEEeCCCceEEEec-cCCCEEEEEccC
Q 015650          356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG-HQKNTVVILGMD  401 (403)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs-~d~~~l~~~~~d  401 (403)
                                       +..+..+...+++++|+ +|++.|++++..
T Consensus       263 -----------------~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          263 -----------------IARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             -----------------EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             -----------------EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence                             22345555678899998 898888776543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.55  E-value=1.1e-12  Score=128.97  Aligned_cols=235  Identities=8%  Similarity=-0.011  Sum_probs=148.5

Q ss_pred             cCCCCEEEEEc-CCc---EEEEEcC-----CCeeEEEEe---cccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           94 NQDHGCFAAGT-DHG---FRIYNCD-----PFREIFRRD---FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        94 s~d~~~l~~~~-~~~---i~iw~~~-----~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      +|+|++++... +.+   -.||..+     .++......   +..++...+..+.|+||+..++.+..+.......|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48999887665 332   5566553     222221111   22233457788999999877665432100001369999


Q ss_pred             ECCCCceeEEEecCCceeEEEEecCceEEE---ecC--------------eEEEEEcCCcee--eeEeeccC--CCceeE
Q 015650          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQ--------------KIFVYNFADLKL--LHQIETIA--NPKGLC  220 (403)
Q Consensus       162 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~--------------~i~i~d~~~~~~--~~~~~~~~--~~~~~~  220 (403)
                      |+.+++.+........+..++|+|| ..++   .++              .|++|++.+++.  ...+....  ..+..+
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9999987654323333467899999 6666   222              499999977652  22222222  246678


Q ss_pred             EEeeCCCeEEEEeeCC--ccCeEEEEEccCC--c-eeEEeecCCceEEEEEcCCCCEEEEEeC----CCcEEEEEEcCCC
Q 015650          221 AVSQGVGSLVLVCPGL--QKGQVRVEHYASK--R-TKFIMAHDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDG  291 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~--~d~~i~v~d~~~~--~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~----dg~~i~iwd~~~~  291 (403)
                      .++++++.+++.....  ....|++||+.++  . ...+..+...+.... +|+|+.|+..+.    ++. |.+||+.++
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDLSGS  351 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEECSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeCCCC
Confidence            8999998776665221  2458999999876  5 666766665555553 489998887765    345 999998875


Q ss_pred             -cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          292 -TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       292 -~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                       .....+..+ +...+..+.|+ ++.++++...|+..+||.++
T Consensus       352 ~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          352 TPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             ccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             233444432 44567788887 66778888899998888877

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=4.2e-12  Score=111.38  Aligned_cols=227  Identities=11%  Similarity=0.066  Sum_probs=149.1

Q ss_pred             eEEEEeeeCCeEEEee-------CCCCCCCCCceEEEEECCCCceeEEEe-----cCCceeEEEEecC-ceEEE-e-cCe
Q 015650          131 GVVEMLFRCNILALVG-------GGPDPQYPLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRRD-RIIVV-L-EQK  195 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s-------~~~d~~~~~~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~-~~~~~-~-d~~  195 (403)
                      ....++|++++..+++       ...+     +.|.+||..+++......     +...+.++++.++ +.+++ . .+.
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPA-----GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEEC-----CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCC-----CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            4467778887776666       4455     889999988877543322     3467889999999 87655 3 458


Q ss_pred             EEEEEcCCceeeeE-eec----cCCCceeEEEeeCCCeEEEEeeCCc-------------cCeEEEEEccCCceeEEeec
Q 015650          196 IFVYNFADLKLLHQ-IET----IANPKGLCAVSQGVGSLVLVCPGLQ-------------KGQVRVEHYASKRTKFIMAH  257 (403)
Q Consensus       196 i~i~d~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~g~~-------------d~~i~v~d~~~~~~~~~~~~  257 (403)
                      |.+||.. ++.... ...    ....+..+++.++++ ++++..+..             .+.|..|+.. +....+..+
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~  170 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA  170 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence            9999987 654332 211    112356788888764 444432210             1567777765 555444444


Q ss_pred             CCceEEEEEc----CCCCEEEEE-eCCCcEEEEEEcC-CCcEE--EEEec-CCCc-ccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          258 DSRIACFALT----QDGQLLATS-STKGTLVRIFNTL-DGTLL--QEVRR-GADR-AEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       258 ~~~i~~~~~s----p~g~~l~s~-~~dg~~i~iwd~~-~~~~~--~~~~~-~~~~-~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                      ......++|+    |+|+.|+.+ ..++. |.+||+. +++..  ..+.. ..+. ..+..++++++|+++++...++.|
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            5567889999    999766555 45677 9999976 44421  11111 1122 467889999999988888788899


Q ss_pred             EEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650          328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d  401 (403)
                      .+||.++++.                                   ...+..+...+..++|+++|++|++++.+
T Consensus       250 ~~~d~~~g~~-----------------------------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          250 EVFGPDGGQP-----------------------------------KMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEECTTCBSC-----------------------------------SEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEcCCCCcE-----------------------------------eEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            9999876652                                   11233444678889999999977766543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=1.3e-11  Score=107.41  Aligned_cols=222  Identities=9%  Similarity=-0.004  Sum_probs=150.4

Q ss_pred             CCCCeEEEEEcCCCCE-EEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650           84 PPPTLLHISFNQDHGC-FAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~-l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw  161 (403)
                      +..-.-+..|++++.. +++.. .+.|..|+.++....   .+.  ....+..+.+++++.++++..       +.|.+|
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~~--~~~~~~~i~~~~dG~l~v~~~-------~~l~~~   78 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RVT--MDAPVSSVALRQSGGYVATIG-------TKFCAL   78 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EEE--CSSCEEEEEEBTTSSEEEEET-------TEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EEe--CCCceEEEEECCCCCEEEEEC-------CeEEEE
Confidence            3344567899996554 45544 445999998776542   222  335678889999887666653       679999


Q ss_pred             ECCCCceeEEEec-----CCceeEEEEecCceEEEec------------CeEEEEEcCC-ceeeeEeeccCCCceeEEEe
Q 015650          162 DDHQSRCIGELSF-----RSEVRSVKLRRDRIIVVLE------------QKIFVYNFAD-LKLLHQIETIANPKGLCAVS  223 (403)
Q Consensus       162 d~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~d------------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~  223 (403)
                      |..+++.......     ...+..+++.++|++.+.+            ....+|.+.. ++... +.........++|+
T Consensus        79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~s  157 (297)
T 3g4e_A           79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWS  157 (297)
T ss_dssp             ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEEC
T ss_pred             ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEc
Confidence            9988765433332     2347889999999877732            2234444432 33322 22233344678999


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEcc--CCcee---EE---eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYA--SKRTK---FI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~--~~~~~---~~---~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~  295 (403)
                      ++++.++++-  ..++.|.+|++.  ++.+.   .+   ..+......++++++|++.++....+. |.+||..+++.+.
T Consensus       158 pdg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~  234 (297)
T 3g4e_A          158 LDHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQ  234 (297)
T ss_dssp             TTSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEE
T ss_pred             CCCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEE
Confidence            9998777664  457899999974  33321   12   223456789999999987777777777 9999998899998


Q ss_pred             EEecCCCcccEEEEEeC-CCCCEEEEEeC
Q 015650          296 EVRRGADRAEIYSLAFS-SNAQWLAVSSD  323 (403)
Q Consensus       296 ~~~~~~~~~~v~~l~~s-~d~~~l~s~~~  323 (403)
                      .+..  ....+++++|. ||++.|++++.
T Consensus       235 ~i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          235 TVKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            8875  33679999998 88887766553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.53  E-value=9.7e-13  Score=128.32  Aligned_cols=244  Identities=10%  Similarity=0.086  Sum_probs=159.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-----CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC---
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT-----DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ---  152 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~-----~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~---  152 (403)
                      .+|...+..++|||||++||.+.     +.. |++||+++++.... .+.   ......+.|+ |+..|+....+..   
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~---~~k~~~~~Ws-Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK---DVKFSGISWL-GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE---EEESCCCEEE-TTTEEEEEESSCCC--
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC---CceeccEEEe-CCCEEEEEEecCcccc
Confidence            44666789999999999998654     222 99999998875422 222   1112355676 5543333322200   


Q ss_pred             -----CCCceEEEEECCCCce--eEEEec----CCceeEEEEecCceEEE---e----cCeEEEEEcCCce-eeeEeecc
Q 015650          153 -----YPLNKVMIWDDHQSRC--IGELSF----RSEVRSVKLRRDRIIVV---L----EQKIFVYNFADLK-LLHQIETI  213 (403)
Q Consensus       153 -----~~~~~i~iwd~~~~~~--~~~~~~----~~~i~~~~~~~~~~~~~---~----d~~i~i~d~~~~~-~~~~~~~~  213 (403)
                           .....|++|++.++..  ...+..    ...+..+.|+||+++++   .    .+.|+++|+.++. ....+..+
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence                 1125699999987653  333332    23467899999999886   1    2589999998763 34455444


Q ss_pred             CCCceeEEEeeCCCeEEEEeeC-CccCeEEEEEccCCce---eEEeecCCceEEEEEcCCCCEEEEEeCCC---cEEEEE
Q 015650          214 ANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIF  286 (403)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~v~d~~~~~~---~~~~~~~~~i~~~~~sp~g~~l~s~~~dg---~~i~iw  286 (403)
                      ....... ++++++.+++.+.. ...+.|.++|+.+...   +.+..|...+.  .|++++++|+....++   . |++|
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~~  355 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQF  355 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEEE
Confidence            4443333 77888888776521 1247899999987543   56666766655  8999999888766544   5 8899


Q ss_pred             EcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC----CcEEEEEeecCC
Q 015650          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFNLKVNS  336 (403)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d----g~v~iwd~~~~~  336 (403)
                      |+.. .....+... ....+..+.++++++.|+....+    +.|+.||+.+++
T Consensus       356 d~~g-~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          356 DYEG-KRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CTTS-CEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             ECCC-CeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            9874 444555432 34568888899998877665544    789999987765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=3.5e-12  Score=113.15  Aligned_cols=232  Identities=13%  Similarity=0.037  Sum_probs=152.1

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEEecccCc----ceeEEEEeeeCCeEEEeeCC--CCCC
Q 015650           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGG--PDPQ  152 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~s~~--~d~~  152 (403)
                      .++++|||++|.++.           ++.|.+||..+.+......+..+.    ......+.+++++..++.+.  .+  
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~--  159 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA--  159 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS--
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC--
Confidence            399999999887664           345999999988766433332100    12334577888877655443  24  


Q ss_pred             CCCceEEEEECCCCceeEEEecCCceeEEEEecCc--eEEE--ecCeEEEEEcCC-ceeeeEeecc----CCCce-eEEE
Q 015650          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFAD-LKLLHQIETI----ANPKG-LCAV  222 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~--~d~~i~i~d~~~-~~~~~~~~~~----~~~~~-~~~~  222 (403)
                         +.|.++|+.+++.+.++.-.+.   ..+.|.+  .++.  .||++.+.++.+ ++........    ..++. ...|
T Consensus       160 ---~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~  233 (386)
T 3sjl_D          160 ---PAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY  233 (386)
T ss_dssp             ---CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred             ---CeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccccee
Confidence               7999999999999999874332   1222332  2222  488888888865 5543211111    11111 1344


Q ss_pred             e-eCCCeEEEEeeCCccCeEEEEEccCCceeEEee-------------cCCceEEEEEcCCCCEEEEEeC----------
Q 015650          223 S-QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSST----------  278 (403)
Q Consensus       223 ~-~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-------------~~~~i~~~~~sp~g~~l~s~~~----------  278 (403)
                      . +++ .+++++   .+|.|++.|+.+........             .......++++++++.|+....          
T Consensus       234 ~~~dG-~~~~vs---~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~  309 (386)
T 3sjl_D          234 SQKAG-RLVWPT---YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  309 (386)
T ss_dssp             ETTTT-EEEEEB---TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             EcCCC-cEEEEe---CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence            4 344 444554   46899999997754332211             1223445788999999887653          


Q ss_pred             CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEE-eCCCcEEEEEeecCCC
Q 015650          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVS-SDKGTVHVFNLKVNSG  337 (403)
Q Consensus       279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~-~~dg~v~iwd~~~~~~  337 (403)
                      ... |.+.|+++++.+..+..+   ..+++|++++|++ +|+++ ..++.|.++|..+++.
T Consensus       310 ~~~-V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          310 SRF-VVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEE-EEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CCE-EEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence            135 999999999999999853   4788999999997 66665 4589999999999884

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=2.5e-12  Score=110.26  Aligned_cols=225  Identities=9%  Similarity=-0.013  Sum_probs=147.3

Q ss_pred             eEEEEeeeCCeEEEe-eCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe--cCeEEEEEcCCcee
Q 015650          131 GVVEMLFRCNILALV-GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKL  206 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~-s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~--d~~i~i~d~~~~~~  206 (403)
                      ....+.+++++.+++ +...+     +.|.+|+..++....... ....+.++++.+++.+++.  ++.|++||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSS-----CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCC-----CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence            667888888877776 64555     889999976554322111 3356889999999886664  57999999765433


Q ss_pred             eeEee-ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 015650          207 LHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (403)
Q Consensus       207 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~  284 (403)
                       ..+. ........+++.++++ ++++.  ..++.|.+|+..+...... ......+.+++++++|+++++...++. |.
T Consensus       100 -~~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~  174 (270)
T 1rwi_B          100 -TVLPFDGLNYPEGLAVDTQGA-VYVAD--RGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VV  174 (270)
T ss_dssp             -EECCCCSCSSEEEEEECTTCC-EEEEE--GGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EE
T ss_pred             -eeeecCCcCCCcceEECCCCC-EEEEE--CCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EE
Confidence             3332 2224456788888765 44443  3567899997655433322 223346789999999997777767778 99


Q ss_pred             EEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccc
Q 015650          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (403)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (403)
                      +||............  +...+.+|+++++|.++++...++.|.+|+.+...... .                       
T Consensus       175 ~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~-----------------------  228 (270)
T 1rwi_B          175 KLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-L-----------------------  228 (270)
T ss_dssp             EECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-C-----------------------
T ss_pred             EEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-e-----------------------
Confidence            999877665433222  22578999999999877777778899999876543100 0                       


Q ss_pred             ceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                                 ....-..+..++++++|+.+++...++
T Consensus       229 -----------~~~~~~~p~~i~~~~~g~l~v~~~~~~  255 (270)
T 1rwi_B          229 -----------PFTGLNTPLAVAVDSDRTVYVADRGND  255 (270)
T ss_dssp             -----------CCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred             -----------ccCCCCCceeEEECCCCCEEEEECCCC
Confidence                       000013567899999998777666654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=1.1e-10  Score=101.26  Aligned_cols=233  Identities=10%  Similarity=-0.031  Sum_probs=157.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ...+.++++.++|.++++.. +++|..|+.+. + .....+. .....+..+.+.+++.++++...+     +.|.+||.
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~  127 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG-I-IKEYTLP-NPDSAPYGITEGPNGDIWFTEMNG-----NRIGRITD  127 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEECT
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c-EEEEeCC-CcCCCceeeEECCCCCEEEEecCC-----ceEEEECC
Confidence            46789999999999888876 45599998762 2 2122232 244567889998888777766555     78999997


Q ss_pred             CCCceeEEEe--cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeE-eeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          164 HQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       164 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                       +++......  ....+..+++.+++.+.+.   ++.|..||. +++.... +.........+++.+++. ++++.  ..
T Consensus       128 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~  202 (299)
T 2z2n_A          128 -DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVE--II  202 (299)
T ss_dssp             -TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEE--TT
T ss_pred             -CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEc--cC
Confidence             555433221  3456889999999877763   578999998 6654432 222234456677777754 44443  24


Q ss_pred             cCeEEEEEccCCceeEEe--ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650          238 KGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~  315 (403)
                      ++.|.+||. ++....+.  .+...+.+++++++|+++++...++. |.+||. +++ +..+....+...+.++++ ++|
T Consensus       203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g  277 (299)
T 2z2n_A          203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGE  277 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTE-EEEEECSSSSCCEEEEEE-CSS
T ss_pred             CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCc-eEEEeCCCCCCccceEEe-cCC
Confidence            678999998 55544432  24467899999999997766656777 999998 554 334432223467899999 888


Q ss_pred             CEEEEEeCCCcEEEEEeecCC
Q 015650          316 QWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       316 ~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .++++.. .+.|..++.++++
T Consensus       278 ~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          278 TIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             CEEEEET-TTEEEEEEEC---
T ss_pred             CEEEEec-CCcEEEEEcCccc
Confidence            8777655 5678888887654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=3.9e-12  Score=114.90  Aligned_cols=215  Identities=13%  Similarity=0.114  Sum_probs=146.0

Q ss_pred             CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC----------CCCCCCCceEEEEECCCCceeEEEecC
Q 015650          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKVMIWDDHQSRCIGELSFR  175 (403)
Q Consensus       106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~i~iwd~~~~~~~~~~~~~  175 (403)
                      +.|.++|..+.+.+  ..+..+. .+  .+.+++++..++.+.          .+     +.|.++|..+++.+..+...
T Consensus        99 ~~VsVID~~t~~vv--~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~-----~~VsviD~~t~~vv~~I~v~  168 (426)
T 3c75_H           99 TQQFVIDGSTGRIL--GMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRT-----DYVEVFDPVTFLPIADIELP  168 (426)
T ss_dssp             EEEEEEETTTTEEE--EEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEE-----EEEEEECTTTCCEEEEEEET
T ss_pred             CeEEEEECCCCEEE--EEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCC-----CEEEEEECCCCcEEEEEECC
Confidence            45999999988776  4443122 23  788888876555443          34     68999999999999888632


Q ss_pred             --------CceeEEEEecCceEEE-e----cCeEEEEEcCCceeeeEeeccCC-------CceeEEEeeC----------
Q 015650          176 --------SEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQIETIAN-------PKGLCAVSQG----------  225 (403)
Q Consensus       176 --------~~i~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~----------  225 (403)
                              .....+.++|||++++ .    ++.|.++|+.+++.+..+.....       ....+.++++          
T Consensus       169 g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~  248 (426)
T 3c75_H          169 DAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFAD  248 (426)
T ss_dssp             TCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred             CccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCC
Confidence                    3467899999998777 2    46899999999988877754210       0111223333          


Q ss_pred             ---------------------------CCeEEEEeeCCccCeEEEEEccCCceeEEee-------------cCCceEEEE
Q 015650          226 ---------------------------VGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFA  265 (403)
Q Consensus       226 ---------------------------~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-------------~~~~i~~~~  265 (403)
                                                 +..++++.   ..+.+.+.|........+..             .......++
T Consensus       249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va  325 (426)
T 3c75_H          249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA  325 (426)
T ss_dssp             TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE
T ss_pred             CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeE
Confidence                                       33333322   23456666665433222110             011122378


Q ss_pred             EcCCCCEEEEEeC----------CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEe-CCCcEEEEEee
Q 015650          266 LTQDGQLLATSST----------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLK  333 (403)
Q Consensus       266 ~sp~g~~l~s~~~----------dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~-~dg~v~iwd~~  333 (403)
                      ++|++++|+....          .+. |.++|+.+++.+..+..+   ....+|.|+|||+ +|++.. .++.|.++|+.
T Consensus       326 ~s~dg~rlyVa~~~~~~gthk~~s~~-VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          326 YHRQSDRIYLLVDQRDEWKHKAASRF-VVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EEGGGTEEEEEEEECCTTCTTSCEEE-EEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             EcCCCCEEEEEecccccccccCCCCE-EEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            9999988777642          246 999999999999999853   4588999999999 888887 59999999999


Q ss_pred             cCCC
Q 015650          334 VNSG  337 (403)
Q Consensus       334 ~~~~  337 (403)
                      +.+.
T Consensus       402 t~kv  405 (426)
T 3c75_H          402 TGEE  405 (426)
T ss_dssp             TCCE
T ss_pred             CCCE
Confidence            9985

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.45  E-value=6.2e-11  Score=103.61  Aligned_cols=224  Identities=11%  Similarity=-0.002  Sum_probs=149.5

Q ss_pred             CCCCCCeEEEEEcCCCCE-EEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           82 SSPPPTLLHISFNQDHGC-FAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~-l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ...........|+++|+. ++++.. +.|..|+.. ++..   .+. .....+..+.+++++.++++...+     +.|.
T Consensus        41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---~~~-~~~~~~~gl~~d~dG~l~v~~~~~-----~~v~  110 (305)
T 3dr2_A           41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---VLL-DATAFTNGNAVDAQQRLVHCEHGR-----RAIT  110 (305)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---EEE-ESCSCEEEEEECTTSCEEEEETTT-----TEEE
T ss_pred             ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---EEe-CCCCccceeeECCCCCEEEEECCC-----CEEE
Confidence            334455678999999984 455554 459999874 3321   222 234567788999988877776555     7899


Q ss_pred             EEECCCCceeEEEec-----CCceeEEEEecCceEEEec--------------------CeEEEEEcCCceeeeEeeccC
Q 015650          160 IWDDHQSRCIGELSF-----RSEVRSVKLRRDRIIVVLE--------------------QKIFVYNFADLKLLHQIETIA  214 (403)
Q Consensus       160 iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~d--------------------~~i~i~d~~~~~~~~~~~~~~  214 (403)
                      +|+.. ++.......     ...+..+++.++|.+.++|                    +.|+.||..+++.....  ..
T Consensus       111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~  187 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL  187 (305)
T ss_dssp             EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred             EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence            99975 553322221     2346789999999988853                    46888887666544333  33


Q ss_pred             CCceeEEEeeCCCeEEEEeeCC---ccCeEEEEEccCCcee---EE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650          215 NPKGLCAVSQGVGSLVLVCPGL---QKGQVRVEHYASKRTK---FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~---~d~~i~v~d~~~~~~~---~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd  287 (403)
                      .....++++++++.++++....   ..+.|.+|++....+.   .+ .........++++++|++. +++.+ . |.+||
T Consensus       188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-g-v~~~~  264 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-G-VCVFD  264 (305)
T ss_dssp             SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-E-EEEEC
T ss_pred             CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-c-EEEEC
Confidence            3446789999998877764221   0368999998764321   11 1123445678999999954 44444 5 99999


Q ss_pred             cCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      . +++.+..+..+   ..+.+++|+++++.|..++.++
T Consensus       265 ~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          265 S-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             T-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTE
T ss_pred             C-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe
Confidence            7 68888888743   3588999999999888887664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.45  E-value=2.7e-10  Score=100.53  Aligned_cols=217  Identities=10%  Similarity=0.058  Sum_probs=147.2

Q ss_pred             CeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC
Q 015650           87 TLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        87 ~i~~i~~s~d~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      -..+..|+|++. +++++. +++|..|+.++++..   .+.  ....+.++.+.+++.++++..       ..|.+||..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~~--~~~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~  117 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT---VHA--LPFMGSALAKISDSKQLIASD-------DGLFLRDTA  117 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---EEE--CSSCEEEEEEEETTEEEEEET-------TEEEEEETT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEE--CCCcceEEEEeCCCeEEEEEC-------CCEEEEECC
Confidence            456789999855 445554 455999998776533   222  234688888999888777653       459999988


Q ss_pred             CCceeEEEec-----CCceeEEEEecCceEEEec---------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          165 QSRCIGELSF-----RSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       165 ~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      +++.......     ...+.+++++++|.+++.+         +.|+.++  +++... +.........++++++++.++
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEE
Confidence            8875433322     2357899999999877732         3566666  454332 322233456789999988776


Q ss_pred             EEeeCCccCeEEEEEcc--CC-ce---eEEe---ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC
Q 015650          231 LVCPGLQKGQVRVEHYA--SK-RT---KFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~--~~-~~---~~~~---~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (403)
                      ++.  ..++.|.+||+.  ++ .+   ..+.   ........++++++|++.++...++. |.+||. +++.+..+..  
T Consensus       195 v~~--~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~--  268 (326)
T 2ghs_A          195 FVD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEV--  268 (326)
T ss_dssp             EEE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEEC--
T ss_pred             EEE--CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEEC--
Confidence            654  356899999986  44 21   2221   23455788999999987777666677 999997 6777777764  


Q ss_pred             CcccEEEEEeC-CCCCEEEEEeCC
Q 015650          302 DRAEIYSLAFS-SNAQWLAVSSDK  324 (403)
Q Consensus       302 ~~~~v~~l~~s-~d~~~l~s~~~d  324 (403)
                      ....+++++|+ ++++.|++++..
T Consensus       269 ~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          269 PGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCcEEEEEecCCCCEEEEEecC
Confidence            33579999998 898877655533

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.45  E-value=1.4e-11  Score=109.36  Aligned_cols=255  Identities=11%  Similarity=0.093  Sum_probs=163.5

Q ss_pred             EEcCCCCEEEEEcC------CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC----------CCCCCCC
Q 015650           92 SFNQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPL  155 (403)
Q Consensus        92 ~~s~d~~~l~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~  155 (403)
                      ...|+++.+.+...      +.|.++|..+.+.+  ..+..+.. +  .+.+++++..++.+.          .+     
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--~~I~vG~~-P--~va~spDG~~lyVan~~~~r~~~G~~~-----  108 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMIDGGFL-P--NPVVADDGSFIAHASTVFSRIARGERT-----  108 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEE-----
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE--EEEECCCC-C--cEEECCCCCEEEEEcccccccccCCCC-----
Confidence            45688888777653      34999999888766  44442222 3  388888877655443          24     


Q ss_pred             ceEEEEECCCCceeEEEecC--------CceeEEEEecCceEEE-e----cCeEEEEEcCCceeeeEeeccCCCceeEEE
Q 015650          156 NKVMIWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  222 (403)
                      +.|.+||..+++.+..+.-.        .....+.++|||++++ .    ++.|.++|+.+++.+.++....    +..+
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~  184 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHI  184 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----ccee
Confidence            68999999999999988722        2567899999998766 2    4789999999999998886422    1223


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccC-CceeEEe-ec----CCceE-EEEEc-CCCCEEEEEeCCCcEEEEEEcCCCc--
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIM-AH----DSRIA-CFALT-QDGQLLATSSTKGTLVRIFNTLDGT--  292 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~-~~----~~~i~-~~~~s-p~g~~l~s~~~dg~~i~iwd~~~~~--  292 (403)
                      .|.+...+++.  +.||.+.+.++.. +++.... .+    ...+. ...|. ++|++++ .+.+|. |++.|+.+..  
T Consensus       185 ~P~g~~~~~~~--~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~  260 (386)
T 3sjl_D          185 FPTAPDTFFMH--CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAK  260 (386)
T ss_dssp             EEEETTEEEEE--ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCE
T ss_pred             ecCCCceeEEE--CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcce
Confidence            34444334333  3578888888765 4432111 11    12222 24564 6776555 566788 9999987654  


Q ss_pred             EEEEEe--------cCCCcccEEEEEeCCCCCEEEEEeC----------CCcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650          293 LLQEVR--------RGADRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (403)
Q Consensus       293 ~~~~~~--------~~~~~~~v~~l~~s~d~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (403)
                      .+..+.        .+........++++++++.|+....          .+.|.++|+.+++.                 
T Consensus       261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-----------------  323 (386)
T 3sjl_D          261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-----------------  323 (386)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-----------------
T ss_pred             eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE-----------------
Confidence            333332        1111233445778999998887643          24688889988873                 


Q ss_pred             ccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCC-EEEEEcc
Q 015650          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGM  400 (403)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~-~l~~~~~  400 (403)
                                        +.++... ..+..++|++|++ .|+++..
T Consensus       324 ------------------~~~i~vg-~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          324 ------------------LAKFEMG-HEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             ------------------EEEEEEE-EEECEEEECSSSSCEEEEEET
T ss_pred             ------------------EEEEECC-CCcceEEECCCCCeEEEEEcC
Confidence                              2223332 2577899999997 7777543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.45  E-value=1.2e-10  Score=105.99  Aligned_cols=195  Identities=11%  Similarity=0.026  Sum_probs=133.5

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e--cC--eEEEEEcCCc
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--EQ--KIFVYNFADL  204 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--d~--~i~i~d~~~~  204 (403)
                      .....+++++++.++++...+     +.|++||..+++............ ++|++++..++ .  ++  .|++|+...+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~-----~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDD-----PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTT-----TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCC-----CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            356788888888877777766     899999998877665555433344 99999987655 3  23  8999998765


Q ss_pred             eeeeEe----eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe-----ecCCce-E-EEEEcCC-CCE
Q 015650          205 KLLHQI----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-----AHDSRI-A-CFALTQD-GQL  272 (403)
Q Consensus       205 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~-----~~~~~i-~-~~~~sp~-g~~  272 (403)
                      .....+    .........+++++++..+|++   ..++.|+.||..++....+.     ++...- . .++|+|+ +.+
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~---d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFV---DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSEEEEE---CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCeEEEE---ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            443333    2134456778999976666663   24789999999887655541     122222 3 9999995 555


Q ss_pred             EEEEeCCCcEEEEEEcCCCcEEEEEecCC-------------CcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       273 l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                      +++-..++. |+.|+.. ++ +..+.+..             .-.....|+++++|+++++-. .++.|+.|++.+++
T Consensus       282 yv~d~~~~~-I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          282 YMSDQNLSS-VYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEEETTTTE-EEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEEeCCCCE-EEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            555556677 9999865 43 33333211             013478999999999777777 88999999976654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=6.8e-12  Score=111.76  Aligned_cols=167  Identities=10%  Similarity=0.106  Sum_probs=124.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe-----------eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFR-----------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      .++.+++++...++++|+.+++++|+++...           ......    ... |..+.|  ++..++.+ .+     
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~----lp~-V~~l~f--d~~~L~v~-~~-----  105 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE----IPD-VIFVCF--HGDQVLVS-TR-----  105 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE----CTT-EEEEEE--ETTEEEEE-ES-----
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee----CCC-eeEEEE--CCCEEEEE-cC-----
Confidence            6889999999999999998899999975332           111122    334 899999  44444444 55     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      +.|++||+.+........ +...+.++.+.+....++ .||.|++||+.+++...    +...+.+++|+|++  ++++ 
T Consensus       106 ~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg-  178 (388)
T 1xip_A          106 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL-  178 (388)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE-
T ss_pred             CcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE-
Confidence            899999998776555554 777888888877653333 69999999999876643    34578899999988  3333 


Q ss_pred             eCCccCeEEEEEccCCce---eEE------e---ecCCceEEEEEcCCCCEEEE
Q 015650          234 PGLQKGQVRVEHYASKRT---KFI------M---AHDSRIACFALTQDGQLLAT  275 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~---~~~------~---~~~~~i~~~~~sp~g~~l~s  275 (403)
                        ..||.+++|+......   ..+      .   +|...|.+|.|.+++.+|++
T Consensus       179 --~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          179 --LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             --ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             --EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence              4789999999988773   344      2   36788999999999998886

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=1.8e-11  Score=109.01  Aligned_cols=172  Identities=15%  Similarity=0.145  Sum_probs=123.0

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-----------eeEEEecCCceeEEEEecCceEEE--ecCeEE
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----------CIGELSFRSEVRSVKLRRDRIIVV--LEQKIF  197 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~  197 (403)
                      .+..+++++....+++++.+      .+.+|++...+           ......+.. |..++|  |+.+++  .++.|+
T Consensus        39 ~~nlLais~~~gll~a~~~~------~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS------KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT------EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC------EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEE
Confidence            46677777776666666654      67779865433           223344666 999999  666666  689999


Q ss_pred             EEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEe
Q 015650          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (403)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~  277 (403)
                      +||+++......+..+...+..+.  +-...++++   ..||.|.+||+..+....   +...|+|++|+|+|  ++.|.
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~--~~~p~~av~---~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLK--NVNNTLVIL---NSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEE--ECSSEEEEE---ETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred             EEEchhhhccCccceeecceeeEE--ecCCCEEEE---ECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence            999987665555555555555444  333343333   478999999999766543   45689999999999  67899


Q ss_pred             CCCcEEEEEEcCCCcE--EEEEec----C---CCcccEEEEEeCCCCCEEEEEe
Q 015650          278 TKGTLVRIFNTLDGTL--LQEVRR----G---ADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       278 ~dg~~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      .||. +++|+...++.  ..++..    +   .|...|.+|.|.+++.+|++-.
T Consensus       180 ~dg~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          180 KDRS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             TTSC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cCCc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999 99999877775  556621    1   2557899999999999888643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.37  E-value=1.8e-09  Score=93.74  Aligned_cols=230  Identities=10%  Similarity=-0.017  Sum_probs=152.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ...+.++++.++|.++++.. ++.|..|+.. ++.. ...+. .....+..+.+.+++.++++...+     +.|..|+.
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~  132 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLP-QPDSGPYGITEGLNGDIWFTQLNG-----DRIGKLTA  132 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECS-STTCCEEEEEECSTTCEEEEETTT-----TEEEEECT
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCC-CCCCCCccceECCCCCEEEEccCC-----CeEEEECC
Confidence            45789999999999888776 4559999877 3332 22332 234567888888887777766555     78999997


Q ss_pred             CCCceeEE-Ee-cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeE-eeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          164 HQSRCIGE-LS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       164 ~~~~~~~~-~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      . ++.... +. ....+..+++.+++.+.+.   ++.|..||. +++.... ..........+++.+++ .++++.  ..
T Consensus       133 ~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~--~~  207 (300)
T 2qc5_A          133 D-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVE--IM  207 (300)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEE--TT
T ss_pred             C-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEc--cC
Confidence            7 554422 22 3457889999999886663   578999998 5554332 11223345667777765 455543  24


Q ss_pred             cCeEEEEEccCCceeEE--eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650          238 KGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~~--~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~  315 (403)
                      .+.|.+||. .+....+  ..+...+.+++++++|+++++...++. |..||. +++.. .+........+.+++++++|
T Consensus       208 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g  283 (300)
T 2qc5_A          208 GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTIQ-EYQLQTENAEPHGITFGKDG  283 (300)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCEE-EEECCSTTCCCCCEEECTTS
T ss_pred             CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcEE-EEECCccCCccceeEeCCCC
Confidence            568999998 4333333  234566899999999997766656677 999997 55543 33322233568899999999


Q ss_pred             CEEEEEeCCCcEEEEEee
Q 015650          316 QWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       316 ~~l~s~~~dg~v~iwd~~  333 (403)
                      +++++.. . .|..+|.+
T Consensus       284 ~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          284 SVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CEEEECS-S-EEEEEEEC
T ss_pred             CEEEEcc-C-ceEEeCCC
Confidence            8666554 4 67666653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.36  E-value=4.5e-10  Score=98.09  Aligned_cols=222  Identities=13%  Similarity=0.047  Sum_probs=143.2

Q ss_pred             eeEEEEeeeCCeE-EEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcCCc
Q 015650          130 IGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL  204 (403)
Q Consensus       130 ~~v~~~~~~~~~~-~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~  204 (403)
                      .......|++++. ++++...+     +.|..|+. +++. ..+. ....+..+++.++|++++.   ++.|.+|+.. +
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~-----~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVG-----RRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTT-----TEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCccCCeEeCCCCEEEEEECCC-----CEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            3455677888765 45555555     89999997 5553 4444 6677899999999998774   3689999975 5


Q ss_pred             eeeeEeecc----CCCceeEEEeeCCCeEEEEee--CC-------------ccCeEEEEEccCCceeEEeecCCceEEEE
Q 015650          205 KLLHQIETI----ANPKGLCAVSQGVGSLVLVCP--GL-------------QKGQVRVEHYASKRTKFIMAHDSRIACFA  265 (403)
Q Consensus       205 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--g~-------------~d~~i~v~d~~~~~~~~~~~~~~~i~~~~  265 (403)
                      +........    ...+..+++.+++. +++.-.  |.             ..+.|..||..++....+. .......++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~  194 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLA  194 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceE
Confidence            432222111    12345688888775 333210  11             1256777777666665554 455678899


Q ss_pred             EcCCCCEEEEEeCC------CcEEEEEEcCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          266 LTQDGQLLATSSTK------GTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       266 ~sp~g~~l~s~~~d------g~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |+||++.|+.+...      +. |++|++..+..  ...+... .......++++++|+++++ ..+ .|.+|+.+ ++.
T Consensus       195 ~spdg~~lyv~~~~~~~~~~~~-i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~~-g~~  269 (305)
T 3dr2_A          195 FSPDEQTLYVSQTPEQGHGSVE-ITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSS-SGT-GVCVFDSD-GQL  269 (305)
T ss_dssp             ECTTSSEEEEEECCC---CCCE-EEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEEC-CSS-EEEEECTT-SCE
T ss_pred             EcCCCCEEEEEecCCcCCCCCE-EEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEe-cCC-cEEEECCC-CCE
Confidence            99999988777665      56 99999876541  1122111 2234567899999995554 444 48888863 331


Q ss_pred             CCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                                                         +..+..+. .+..++|+++++.|++++.+|
T Consensus       270 -----------------------------------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          270 -----------------------------------LGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             -----------------------------------EEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             -----------------------------------EEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence                                               22344444 578899999999999887654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.36  E-value=1.4e-09  Score=97.25  Aligned_cols=228  Identities=11%  Similarity=0.040  Sum_probs=147.5

Q ss_pred             CCCCEEEEEc--CCcEEEEEcCC--CeeEEEEecc------cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC
Q 015650           95 QDHGCFAAGT--DHGFRIYNCDP--FREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        95 ~d~~~l~~~~--~~~i~iw~~~~--~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      +++++|.+.+  ++.|.|+|+.+  .+....+.++      ......-..+...+++.++...+....-..+.|.++|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            8899988776  45599999863  3444445552      011123445566788854433322101112689999999


Q ss_pred             CCceeEEEe-cCC---ceeEEEEecCceEEE-e---------------------cCeEEEEEcCCceeeeEeeccCC--C
Q 015650          165 QSRCIGELS-FRS---EVRSVKLRRDRIIVV-L---------------------EQKIFVYNFADLKLLHQIETIAN--P  216 (403)
Q Consensus       165 ~~~~~~~~~-~~~---~i~~~~~~~~~~~~~-~---------------------d~~i~i~d~~~~~~~~~~~~~~~--~  216 (403)
                      +++.+.++. ...   --..+.|+|++..++ +                     +++|.+||+.+++.++++.....  .
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            999999887 222   234588899988776 4                     37999999999888888765321  1


Q ss_pred             ceeEEE--eeCCCeEEEEee---CCccCeEEEEEccCCceeEEe-----ec----------------CCceEEEEEcCCC
Q 015650          217 KGLCAV--SQGVGSLVLVCP---GLQKGQVRVEHYASKRTKFIM-----AH----------------DSRIACFALTQDG  270 (403)
Q Consensus       217 ~~~~~~--~~~~~~~~~~~~---g~~d~~i~v~d~~~~~~~~~~-----~~----------------~~~i~~~~~sp~g  270 (403)
                      ...+.|  +|+++..|+++.   -..+++|.+|..+.+......     ..                ......|.+++||
T Consensus       253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence            223445  888887777762   004568877766553321111     10                2346889999999


Q ss_pred             CEEEEEeCCCcEEEEEEcCC---CcEEEEEecCCC------------cccEEEEEeCCCCCEEEEEe
Q 015650          271 QLLATSSTKGTLVRIFNTLD---GTLLQEVRRGAD------------RAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~~~---~~~~~~~~~~~~------------~~~v~~l~~s~d~~~l~s~~  322 (403)
                      ++|+++......|.+||+.+   .+.+..+..+..            .+.-..++++|||++|+++.
T Consensus       333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99998877443499999853   456666654311            01357899999999999887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.35  E-value=4e-09  Score=94.33  Aligned_cols=189  Identities=12%  Similarity=0.064  Sum_probs=123.7

Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCCC----ceeEEEe--------cCCceeEEEEecCceEEE--ec------CeEEEEE
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS--------FRSEVRSVKLRRDRIIVV--LE------QKIFVYN  200 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~~----~~~~~~~--------~~~~i~~~~~~~~~~~~~--~d------~~i~i~d  200 (403)
                      ..+++++..+     +.|.++|+.+.    +.++.++        .......+.+.|+|.++.  .+      +.|.++|
T Consensus        96 ~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           96 RFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEEC
T ss_pred             CEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEE
Confidence            3455666666     89999999765    5666663        112456788899994444  23      6899999


Q ss_pred             cCCceeeeEeeccCCC---ceeEEEeeCCCeEEEEeeC----------------CccCeEEEEEccCCcee-EEeec--C
Q 015650          201 FADLKLLHQIETIANP---KGLCAVSQGVGSLVLVCPG----------------LQKGQVRVEHYASKRTK-FIMAH--D  258 (403)
Q Consensus       201 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g----------------~~d~~i~v~d~~~~~~~-~~~~~--~  258 (403)
                      .++++.+..+.....+   -+.+.++|+++.++...-|                .....|.+||+.+++.. .+...  .
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9999998888643222   2347789988843322100                23689999999886533 33321  1


Q ss_pred             CceEEEEE--cCCCCEEEEEeC-----C-CcEEEEEEcCCCcE--EEEEecCCC----------------cccEEEEEeC
Q 015650          259 SRIACFAL--TQDGQLLATSST-----K-GTLVRIFNTLDGTL--LQEVRRGAD----------------RAEIYSLAFS  312 (403)
Q Consensus       259 ~~i~~~~~--sp~g~~l~s~~~-----d-g~~i~iwd~~~~~~--~~~~~~~~~----------------~~~v~~l~~s  312 (403)
                      .....+.|  +|++++++.++.     . ++ |.+|....++.  ++.+.....                ......|.+|
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            23455656  999999988875     4 45 88776654432  122111100                1357889999


Q ss_pred             CCCCEEEEEe-CCCcEEEEEeecC
Q 015650          313 SNAQWLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       313 ~d~~~l~s~~-~dg~v~iwd~~~~  335 (403)
                      +||++|.++. ..+.|.+||+...
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSST
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCC
Confidence            9999998776 5789999999744

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=6.3e-10  Score=98.90  Aligned_cols=233  Identities=9%  Similarity=-0.005  Sum_probs=154.3

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCc-EEEEEcCCCeeEEEEecc------cCcceeEEEEeeeCCeEEEeeCCC-----CC
Q 015650           86 PTLLHISFNQDHGCFAAGT--DHG-FRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGP-----DP  151 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~--~~~-i~iw~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~s~~~-----d~  151 (403)
                      ..+..++++++|+++++..  +++ ++||.++.++ .  ..+.      ..+...+..+.+++++.+++....     + 
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~--~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~-   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-L--IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV-   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-E--EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC-
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-e--ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC-
Confidence            6789999999999998863  222 6777765332 2  2221      124467899999998766554322     3 


Q ss_pred             CCCCceEEEEECCCCceeEEEecC-------CceeEEEEecC-ceEEEe------cCeEEEEEcCCceeeeEeeccC---
Q 015650          152 QYPLNKVMIWDDHQSRCIGELSFR-------SEVRSVKLRRD-RIIVVL------EQKIFVYNFADLKLLHQIETIA---  214 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~-~~~~~~------d~~i~i~d~~~~~~~~~~~~~~---  214 (403)
                          +.|.+||+.+++.+..+...       ..+..+++.++ +..+++      ++.|.+||+.+++..+.+..+.   
T Consensus        93 ----~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~  168 (343)
T 2qe8_A           93 ----PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA  168 (343)
T ss_dssp             ----CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred             ----CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence                68999999999887777622       34689999975 554443      4689999998877655443210   


Q ss_pred             --------------------------CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC---Cc--------eeEEeec
Q 015650          215 --------------------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KR--------TKFIMAH  257 (403)
Q Consensus       215 --------------------------~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~---~~--------~~~~~~~  257 (403)
                                                .....++++++++.+|++.  .....+..++...   ..        .....++
T Consensus       169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~  246 (343)
T 2qe8_A          169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP--MHSTSMYRIKSADLSNLQLTDAELGSKIERYSE  246 (343)
T ss_dssp             CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE--SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE
T ss_pred             ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe--CCCCeEEEEEHHHhcCCCCChhhhhcceEeccc
Confidence                                      1235688999888777664  2234555555321   10        0122244


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 015650          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw  330 (403)
                      ......++++++|+++++...++. |.+||.++++....... .....+.+++|.++++++++.+..+.+.+|
T Consensus       247 ~g~pdgia~d~~G~l~va~~~~~~-V~~~d~~~G~~~~~~~~-~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          247 KPICDGISIDKDHNIYVGDLAHSA-IGVITSADRAYKLLVTD-EKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CCSCSCEEECTTCCEEEEEGGGTE-EEEEETTTTEEEEEEEC-GGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             CCCCceEEECCCCCEEEEccCCCe-EEEEECCCCCEEEEEEC-CceecCCeeEECCCCcEEEEeCcccccccc
Confidence            456678999999999888888888 99999856765433332 123568999999999888887655544433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=1.2e-10  Score=113.52  Aligned_cols=197  Identities=8%  Similarity=0.079  Sum_probs=130.6

Q ss_pred             CcceeEEEEeeeCCeEEEe-----eCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ec-----
Q 015650          127 GGGIGVVEMLFRCNILALV-----GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LE-----  193 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~-----s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d-----  193 (403)
                      ++...+..+.|+||+..++     .++..     ..|++||+.+++.+...........++|+ |+..++   .+     
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~-----~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDW-----REIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCE-----EEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC--
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCce-----EEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccc
Confidence            4555788889999998777     34444     68999999999866542222224578899 987666   23     


Q ss_pred             --------CeEEEEEcCCcee--eeEee--c-cCCCceeEEEeeCCCeEEEEee-CCccCeEEEEEccCC--ceeEEeec
Q 015650          194 --------QKIFVYNFADLKL--LHQIE--T-IANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASK--RTKFIMAH  257 (403)
Q Consensus       194 --------~~i~i~d~~~~~~--~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~v~d~~~~--~~~~~~~~  257 (403)
                              ..|++|++.++..  ...+.  . +......+.++++++.+++... +.....|+++|+.++  ....+..+
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence                    2499999987542  22222  2 2334567889999987766553 223458999999775  56677777


Q ss_pred             CCceEEEEEcCCCCEEEEEeC-C---CcEEEEEEcCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeC-CC--cEE
Q 015650          258 DSRIACFALTQDGQLLATSST-K---GTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KG--TVH  328 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~~~-d---g~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~-dg--~v~  328 (403)
                      ....... ++++|..|+..+. +   +. |.++|+.++..  ...+..  +...+.  .|++++++|+.... ++  .|+
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence            6666655 6677776655443 3   46 99999987654  234443  333444  88999998877664 44  688


Q ss_pred             EEEeecC
Q 015650          329 VFNLKVN  335 (403)
Q Consensus       329 iwd~~~~  335 (403)
                      +|+++.+
T Consensus       354 ~~d~~g~  360 (693)
T 3iuj_A          354 QFDYEGK  360 (693)
T ss_dssp             EECTTSC
T ss_pred             EEECCCC
Confidence            8887643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.31  E-value=8.2e-10  Score=98.14  Aligned_cols=198  Identities=9%  Similarity=0.026  Sum_probs=130.2

Q ss_pred             eeEEEEeeeCCeEEEeeCCC--CCCCCCceEEEEECCCCceeEEEe--------cCCceeEEEEecCceEEEec------
Q 015650          130 IGVVEMLFRCNILALVGGGP--DPQYPLNKVMIWDDHQSRCIGELS--------FRSEVRSVKLRRDRIIVVLE------  193 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~--d~~~~~~~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~d------  193 (403)
                      .....+++++++..+++...  +     +.++||.+.+++. ..+.        +-..+..+++.+++++.+.|      
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~-----~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~   90 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQ-----PEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSK   90 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGC-----CSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHT
T ss_pred             CCcceEEECCCCCEEEEeCCCCC-----CceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcC
Confidence            46778888888877777432  2     3255555545543 2221        33578999999999877743      


Q ss_pred             --CeEEEEEcCCceeeeEeecc------CCCceeEEEeeCCCeEEEEeeC-CccCeEEEEEccCCceeEEe-ec------
Q 015650          194 --QKIFVYNFADLKLLHQIETI------ANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASKRTKFIM-AH------  257 (403)
Q Consensus       194 --~~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~v~d~~~~~~~~~~-~~------  257 (403)
                        +.|.+||+.+++.+..+...      ......+++++++..+|++-.+ ..++.|.+||+.+++...+. .|      
T Consensus        91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence              68999999999877766532      1234678888876666655321 14688999999875543322 11      


Q ss_pred             -----------------------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC---CCc--------EEEEEecCCCc
Q 015650          258 -----------------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTL---DGT--------LLQEVRRGADR  303 (403)
Q Consensus       258 -----------------------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~---~~~--------~~~~~~~~~~~  303 (403)
                                             ...+..|+|+|||+.|+.+...+..|..++..   .+.        .+..+.   +.
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g---~~  247 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS---EK  247 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE---EC
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc---cC
Confidence                                   02357899999999998888777425555532   111        011111   22


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .....++++++|.++++...++.|.+||..+++
T Consensus       248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             CCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            345679999999999998899999999984443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.29  E-value=2.3e-09  Score=103.96  Aligned_cols=231  Identities=11%  Similarity=0.053  Sum_probs=144.4

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEEecc-cCc-ceeEE-EEeeeCCeEEEeeCC-----CCCCCCCceEEEEECCCCc
Q 015650           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGG-GIGVV-EMLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-~~~-~~~v~-~~~~~~~~~~~~s~~-----~d~~~~~~~i~iwd~~~~~  167 (403)
                      +..|++++ ++.|..+|.++++.+...... ... ...+. ..... ++..++..+     .+     +.|+.||..+|+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~-----g~v~a~D~~tG~  194 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVR-----GYVTAYDAETGK  194 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCB-----CEEEEEETTTCC
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCC-----CEEEEEECCCCc
Confidence            44566665 666999999999887655442 000 01111 00111 444555432     24     899999999999


Q ss_pred             eeEEEec-C-C------------------------------ceeEEEEecCceEEE---ecC------------------
Q 015650          168 CIGELSF-R-S------------------------------EVRSVKLRRDRIIVV---LEQ------------------  194 (403)
Q Consensus       168 ~~~~~~~-~-~------------------------------~i~~~~~~~~~~~~~---~d~------------------  194 (403)
                      .+..+.. . .                              ....+++.++..+++   .++                  
T Consensus       195 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~  274 (689)
T 1yiq_A          195 EAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFL  274 (689)
T ss_dssp             EEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred             EEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            9877751 1 0                              012467887655444   233                  


Q ss_pred             -eEEEEEcCCceeeeEeeccCCC---------ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC------
Q 015650          195 -KIFVYNFADLKLLHQIETIANP---------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD------  258 (403)
Q Consensus       195 -~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~------  258 (403)
                       .|..+|.++|+.+..++.....         .....+..++...-++..+..+|.++++|.+++++..-....      
T Consensus       275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~  354 (689)
T 1yiq_A          275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK  354 (689)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence             4999999999999887653211         111222334432112223568999999999887654211000      


Q ss_pred             -----------------------C-----------ceEEEEEcCCCCEEEEEeC--------------------------
Q 015650          259 -----------------------S-----------RIACFALTQDGQLLATSST--------------------------  278 (403)
Q Consensus       259 -----------------------~-----------~i~~~~~sp~g~~l~s~~~--------------------------  278 (403)
                                             .           .-..++|+|+..++++...                          
T Consensus       355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  434 (689)
T 1yiq_A          355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL  434 (689)
T ss_dssp             EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred             ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence                                   0           0113788998888876532                          


Q ss_pred             -------------------CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          279 -------------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       279 -------------------dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                                         +|. |+.||+.+++.+-.+..+   ..+..-.+...+.+++.++.||.|+.||.++++.
T Consensus       435 ~~~~~p~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          435 RTGMMPEGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EECCCCSSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccCcccccCCCCCCCccee-EEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence                               367 999999999998887743   3333345556788999999999999999999984

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.28  E-value=9.9e-11  Score=103.99  Aligned_cols=212  Identities=6%  Similarity=-0.015  Sum_probs=134.7

Q ss_pred             cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC----------CCCCCCCceEEEEECCCCceeEEEecC-
Q 015650          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKVMIWDDHQSRCIGELSFR-  175 (403)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~i~iwd~~~~~~~~~~~~~-  175 (403)
                      .|.++|.++++.+  ..+..+. .+  .+.+++++..++.+.          .+     +.|.+||..+++.+.++... 
T Consensus        47 ~vsvID~~t~~v~--~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~-----~~VsviD~~T~~vv~~I~v~~  116 (368)
T 1mda_H           47 ENWVSCAGCGVTL--GHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRT-----DYVEVFDPVTFLPIADIELPD  116 (368)
T ss_dssp             EEEEEETTTTEEE--EEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEE-----EEEEEECTTTCCEEEEEEETT
T ss_pred             eEEEEECCCCeEE--EEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCC-----CEEEEEECCCCCEEEEEECCC
Confidence            6789999888776  4444223 23  688888875554443          34     78999999999999998732 


Q ss_pred             -------CceeEEEEecCceEEE-e----cCeEEE--EEcCCceeeeEeeccCC-------CceeEEE------------
Q 015650          176 -------SEVRSVKLRRDRIIVV-L----EQKIFV--YNFADLKLLHQIETIAN-------PKGLCAV------------  222 (403)
Q Consensus       176 -------~~i~~~~~~~~~~~~~-~----d~~i~i--~d~~~~~~~~~~~~~~~-------~~~~~~~------------  222 (403)
                             .....+.++|||++++ .    ++.+.+  +|+.+   +..+.....       ....+++            
T Consensus       117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECc
Confidence                   3467899999998777 2    356888  88866   333321100       0000111            


Q ss_pred             -------------------------eeCCCeEEEEeeCCccCeEEEEEccCCceeEEee----------c---CCceEEE
Q 015650          223 -------------------------SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA----------H---DSRIACF  264 (403)
Q Consensus       223 -------------------------~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~----------~---~~~i~~~  264 (403)
                                               .+++..+++++   . +.+.+.|........+..          +   ......+
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v  269 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV  269 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred             cccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence                                     12222222221   2 455666654422111110          0   0111226


Q ss_pred             EEcCCCCEEEEEeC-C--------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCE-EEEEe-CCCcEEEEEee
Q 015650          265 ALTQDGQLLATSST-K--------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW-LAVSS-DKGTVHVFNLK  333 (403)
Q Consensus       265 ~~sp~g~~l~s~~~-d--------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~-l~s~~-~dg~v~iwd~~  333 (403)
                      +|+||+++|+.+.. .        +. +.++|+.+++.+..+..+   .....|+|+|||++ +++.. .++.|.++|+.
T Consensus       270 ~~s~dg~~lyV~~~~~~~~~~~~~~~-~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          270 AKLKNTDGIMILTVEHSRSCLAAAEN-TSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEE-EEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             EEcCCCCEEEEEeccccCcccccCCC-EEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            89999998887643 2        35 679999999999988853   36889999999984 55666 59999999999


Q ss_pred             cCCCCC
Q 015650          334 VNSGSA  339 (403)
Q Consensus       334 ~~~~~~  339 (403)
                      +.+.+.
T Consensus       346 t~kvv~  351 (368)
T 1mda_H          346 SDQDQS  351 (368)
T ss_dssp             SCEEEE
T ss_pred             CCcEEE
Confidence            998533

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.28  E-value=1.5e-09  Score=91.17  Aligned_cols=165  Identities=10%  Similarity=0.002  Sum_probs=117.0

Q ss_pred             CceeEEEecCCc--eeEEEEecCceEEEe-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCcc
Q 015650          166 SRCIGELSFRSE--VRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (403)
Q Consensus       166 ~~~~~~~~~~~~--i~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (403)
                      .+.+.++.|...  ...+.|++++.+.++     ++.|.++|+.+++.+..+...... ....+..+++.+|++.  ..+
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~g~~lyv~t--~~~   85 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLLNEKLYQVV--WLK   85 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETTEEEEEE--TTC
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEeCCEEEEEE--ecC
Confidence            356677776543  579999998766653     468999999999998887643322 3334555677777765  478


Q ss_pred             CeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc---cEEEEEeCCC
Q 015650          239 GQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA---EIYSLAFSSN  314 (403)
Q Consensus       239 ~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~---~v~~l~~s~d  314 (403)
                      +.+.++|..+.++ ..+.....  ....+++||+.|+.+..++. |.++|..+.+.+..+..+....   .++.+.|. +
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~-l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSI-LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCe-EEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence            9999999988554 34432211  12345668887877777777 9999999999988887532211   36788888 7


Q ss_pred             CCEEEEEeCCCcEEEEEeecCCC
Q 015650          315 AQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       315 ~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |+..+....++.|.+.|..+++.
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V  184 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTL  184 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCE
T ss_pred             CEEEEecCCCCeEEEEECCCCcE
Confidence            76666665788999999999984

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.28  E-value=1.9e-08  Score=85.93  Aligned_cols=228  Identities=7%  Similarity=-0.040  Sum_probs=139.9

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeEE---EEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCceeEEE
Q 015650           97 HGCFAAGTDHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (403)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~  172 (403)
                      |.+|..+..+.|+.++++......   ...+. ........++++++ +.++++....     +.|..++...+.....+
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTII   74 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCC-----CEEEEEecCCCCcEEEE
Confidence            345666655568888887543210   01111 12245678888873 4555555445     89999998765543333


Q ss_pred             e-cCCceeEEEEecCc-eEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          173 S-FRSEVRSVKLRRDR-IIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       173 ~-~~~~i~~~~~~~~~-~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      . .......+++.+++ .+.+.   .+.|.++++........+.........+++++++..+|++..+...+.|..++++
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            3 23577899999864 44443   5789999986432222222222344678899987777776533225788888887


Q ss_pred             CCceeEEe-ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe-CC
Q 015650          248 SKRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DK  324 (403)
Q Consensus       248 ~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~d  324 (403)
                      ......+. ........+++++++..|+.+.. .+. |.++|.........+..   ......|+..  +..|+.+. ..
T Consensus       155 g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~~  228 (267)
T 1npe_A          155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKT  228 (267)
T ss_dssp             SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTT
T ss_pred             CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECCC
Confidence            75544433 23345789999998877766554 456 99999875544333332   1334566654  45555444 66


Q ss_pred             CcEEEEEeecCC
Q 015650          325 GTVHVFNLKVNS  336 (403)
Q Consensus       325 g~v~iwd~~~~~  336 (403)
                      +.|.++|..+++
T Consensus       229 ~~v~~~d~~~g~  240 (267)
T 1npe_A          229 NSVIAMDLAISK  240 (267)
T ss_dssp             TEEEEEETTTTE
T ss_pred             CeEEEEeCCCCC
Confidence            889999988776

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.25  E-value=2.9e-08  Score=83.37  Aligned_cols=195  Identities=11%  Similarity=0.033  Sum_probs=137.6

Q ss_pred             eeEEEEeeeCCeEEEeeCCC--CCCCCCceEEEEECCCCceeEEEecCC--ceeEEEEecCceEEE--ecCeEEEEEcCC
Q 015650          130 IGVVEMLFRCNILALVGGGP--DPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVV--LEQKIFVYNFAD  203 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~--d~~~~~~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~--~d~~i~i~d~~~  203 (403)
                      .....+.+++++.++++.+.  +     +.|.++|+.+++.+..+....  ....+++..+..+++  .++.+.++|..+
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~-----s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGR-----SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTT-----CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTT
T ss_pred             CCcccEEEeCCCeEEEECCCCCC-----CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCC
Confidence            34578888886666665442  3     799999999999999887322  334566665544555  388999999999


Q ss_pred             ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEee--cC---CceEEEEEcCCCCEEEEEe
Q 015650          204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HD---SRIACFALTQDGQLLATSS  277 (403)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~--~~---~~i~~~~~sp~g~~l~s~~  277 (403)
                      ++.+.++... .+ ....++++++.++++-   .++.|.++|..+.+. ..+.-  +.   ..+..+.|. +|+..+...
T Consensus        96 ~~v~~~i~~g-~~-~g~glt~Dg~~l~vs~---gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~  169 (266)
T 2iwa_A           96 LSNIKNFTHQ-MK-DGWGLATDGKILYGSD---GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW  169 (266)
T ss_dssp             TEEEEEEECC-SS-SCCEEEECSSSEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             CcEEEEEECC-CC-CeEEEEECCCEEEEEC---CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence            9999988654 12 2355778888877543   368999999988543 33332  11   236678887 775444444


Q ss_pred             CCCcEEEEEEcCCCcEEEEEecCCC-----------cccEEEEEeCCCCCEE-EEEeCCCcEEEEEeecCC
Q 015650          278 TKGTLVRIFNTLDGTLLQEVRRGAD-----------RAEIYSLAFSSNAQWL-AVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       278 ~dg~~i~iwd~~~~~~~~~~~~~~~-----------~~~v~~l~~s~d~~~l-~s~~~dg~v~iwd~~~~~  336 (403)
                      .++. |.+.|..+++.+..+.....           ....+.|+|+|+++.| +++...+.|...++....
T Consensus       170 ~~~~-V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          170 QTDC-IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             TSSE-EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             CCCe-EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            5667 99999999999999874210           1356899999998765 555578899999998865

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=8.3e-09  Score=99.91  Aligned_cols=231  Identities=8%  Similarity=0.061  Sum_probs=147.2

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEEecc-cCc-ceeEE-EEeeeCCeEEEeeCC-----CCCCCCCceEEEEECCCCc
Q 015650           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGG-GIGVV-EMLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-~~~-~~~v~-~~~~~~~~~~~~s~~-----~d~~~~~~~i~iwd~~~~~  167 (403)
                      +..|++++ ++.|..+|..+++.+...... ... ...+. ..... ++..++...     .+     +.|+.||..+|+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~-----g~v~a~D~~tG~  201 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVR-----GYITAYDAETGE  201 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCB-----CEEEEEETTTCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCC-----CEEEEEECCCCc
Confidence            44555555 666999999999888665542 000 01111 11112 344444432     24     899999999999


Q ss_pred             eeEEEec-CCc--------------------------------eeEEEEecCceEEE--e-cC-----------------
Q 015650          168 CIGELSF-RSE--------------------------------VRSVKLRRDRIIVV--L-EQ-----------------  194 (403)
Q Consensus       168 ~~~~~~~-~~~--------------------------------i~~~~~~~~~~~~~--~-d~-----------------  194 (403)
                      .+..+.. ...                                ...+++.+++..++  . ++                 
T Consensus       202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~  281 (677)
T 1kb0_A          202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY  281 (677)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence            9888762 111                                12467777655554  2 22                 


Q ss_pred             --eEEEEEcCCceeeeEeeccCC---------CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee-c-----
Q 015650          195 --KIFVYNFADLKLLHQIETIAN---------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-H-----  257 (403)
Q Consensus       195 --~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-~-----  257 (403)
                        .|..+|.++|+.+..++....         ....+....+++..-++..+..+|.++++|.+++++..-.. .     
T Consensus       282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~  361 (677)
T 1kb0_A          282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA  361 (677)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence              599999999999888764322         11223333455321122235689999999998876532111 0     


Q ss_pred             ------CCce------------------------EEEEEcCCCCEEEEEeCC----------------------------
Q 015650          258 ------DSRI------------------------ACFALTQDGQLLATSSTK----------------------------  279 (403)
Q Consensus       258 ------~~~i------------------------~~~~~sp~g~~l~s~~~d----------------------------  279 (403)
                            ..++                        ..++|+|++.++++...+                            
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence                  0011                        157889998888775432                            


Q ss_pred             ---------------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          280 ---------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       280 ---------------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                                     +. |..||+.+++.+-.+..   ...+....+..++.+++.++.||.+++||.++++.
T Consensus       442 ~g~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGR-LLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             CCEEECSSCCCSCCEEE-EEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccccCCCCCccE-EEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence                           66 99999999999888773   33455555667888899999999999999999995

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.17  E-value=6.7e-09  Score=86.19  Aligned_cols=202  Identities=14%  Similarity=0.099  Sum_probs=133.7

Q ss_pred             ceeEEEecCCce--eEEEEecCceEEEe---cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC
Q 015650          167 RCIGELSFRSEV--RSVKLRRDRIIVVL---EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (403)
Q Consensus       167 ~~~~~~~~~~~i--~~~~~~~~~~~~~~---d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (403)
                      +.+.++.|....  ..+.|+ ++.+..+   +|  .|+++|+++++.+..+.... ......+.++++.+++++  -.++
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~lt--w~~~  107 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLT--WKNG  107 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEE--SSSS
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEE--eeCC
Confidence            456677765544  788998 5655442   33  89999999999988886533 334455666788888775  4689


Q ss_pred             eEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc---ccEEEEEeCCCC
Q 015650          240 QVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNA  315 (403)
Q Consensus       240 ~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~---~~v~~l~~s~d~  315 (403)
                      .+.+||..+.+. ..+.. ..  ....+++|++.|+.+..++. |.++|..+.+.+..+......   ..++.+.|. +|
T Consensus       108 ~v~v~D~~t~~~~~ti~~-~~--eG~glt~dg~~L~~SdGs~~-i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G  182 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNY-DG--EGWGLTHNDQYLIMSDGTPV-LRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG  182 (262)
T ss_dssp             EEEEEETTTCCEEEEEEC-SS--CCCCEEECSSCEEECCSSSE-EEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             EEEEEECccCcEEEEEEC-CC--CceEEecCCCEEEEECCCCe-EEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence            999999988554 34443 22  22233457777777666777 999999999999888753222   335668886 77


Q ss_pred             CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEE
Q 015650          316 QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTV  395 (403)
Q Consensus       316 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l  395 (403)
                      +.++....++.|.+.|.++++.+..++..                ++.+...       .........+.+||+|+++.|
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~----------------~L~~~~~-------~~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGKVTGIIDLN----------------GILAEAG-------PLPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCBEEEEEECT----------------TGGGGSC-------SCCSSCCCEEEEEEETTTTEE
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEECC----------------cCccccc-------cccCcCCceEEEEEcCCCCEE
Confidence            76666667889999999999853333200                0110000       000112356889999999999


Q ss_pred             EEEcc
Q 015650          396 VILGM  400 (403)
Q Consensus       396 ~~~~~  400 (403)
                      ++.+.
T Consensus       240 fVTGK  244 (262)
T 3nol_A          240 FVTGK  244 (262)
T ss_dssp             EEEET
T ss_pred             EEECC
Confidence            88764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.17  E-value=1.9e-09  Score=99.82  Aligned_cols=236  Identities=10%  Similarity=0.055  Sum_probs=153.6

Q ss_pred             CCCCEEEEEc-CCc-EEEEEcCCCeeEEEEecccCcceeEEEEee-e-CCeEEEeeCCCCCC-------------CCCce
Q 015650           95 QDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-R-CNILALVGGGPDPQ-------------YPLNK  157 (403)
Q Consensus        95 ~d~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~s~~~d~~-------------~~~~~  157 (403)
                      +||++|.+.. ++. |.+.|+++.+......+.  .......+.+ . |++.+++.+++...             -..+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            4889888776 333 999999998876434554  2234556665 3 55555554421100             01268


Q ss_pred             EEEEECCCCceeEEEecCCceeEEEEecCceEEE--e-c--------------------------------------CeE
Q 015650          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L-E--------------------------------------QKI  196 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-d--------------------------------------~~i  196 (403)
                      +.++|..+.+.+.++.-......++++|+|++++  . +                                      +.|
T Consensus       177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            9999999999988888444677888999988777  1 1                                      136


Q ss_pred             EEEEcCC--cee-eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc------------eeEEeecCCce
Q 015650          197 FVYNFAD--LKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------------TKFIMAHDSRI  261 (403)
Q Consensus       197 ~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~------------~~~~~~~~~~i  261 (403)
                      .+.|.++  ++. +..+.... ....+.++||++.++++  +..+..|.++|+.+.+            +.....-....
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~--~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVA--GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEE--CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             EEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEe--CCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence            7777766  444 44554432 33678999999875554  4578899999998642            11112234457


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEEcCC----------CcEEEEEecCCCcc---cEEEEEeCCCCCEEEEEe---CCC
Q 015650          262 ACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSS---DKG  325 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~dg~~i~iwd~~~----------~~~~~~~~~~~~~~---~v~~l~~s~d~~~l~s~~---~dg  325 (403)
                      ..++|+|+|...++.-.|+. |.+||+..          .+.+.++..+...+   .-.++.++|||++|++..   .|+
T Consensus       334 ~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr  412 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  412 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             ceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence            89999999943344556777 99999977          56777777642111   112235689999999886   244


Q ss_pred             cE----------EEEEeecCC
Q 015650          326 TV----------HVFNLKVNS  336 (403)
Q Consensus       326 ~v----------~iwd~~~~~  336 (403)
                      .+          .++|+..++
T Consensus       413 ~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          413 FLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             SCCCCSSCCEEEEEEECSSSS
T ss_pred             cccCCCCCCCcceEEEcCCCc
Confidence            31          889995444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=4.8e-08  Score=94.59  Aligned_cols=194  Identities=8%  Similarity=0.061  Sum_probs=120.0

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcc--------eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG--------IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      ++.+++++.++.|..+|..+++.+..........        .....+.+..+.. ++. ..+     +.|..+|..+|+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v-~v~-~~d-----g~l~alD~~tG~  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKV-YVG-AWD-----GRLIALDAATGK  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEE-EEE-CTT-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEE-EEE-cCC-----CEEEEEECCCCC
Confidence            4444444445668899999888887665541110        0011223333333 333 334     899999999999


Q ss_pred             eeEEEecC------CceeEEEEecCceEEE-e-------cCeEEEEEcCCceeeeEeeccCCC-----------------
Q 015650          168 CIGELSFR------SEVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP-----------------  216 (403)
Q Consensus       168 ~~~~~~~~------~~i~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~-----------------  216 (403)
                      .+..+...      ..+...-...++.+++ .       ++.|+.||.++|+.+..+......                 
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            99888732      1222211112555555 2       589999999999998877543221                 


Q ss_pred             ---------------ceeEEEeeCCCeEEEEeeCCc-----------------cCeEEEEEccCCceeEE-e--ecC---
Q 015650          217 ---------------KGLCAVSQGVGSLVLVCPGLQ-----------------KGQVRVEHYASKRTKFI-M--AHD---  258 (403)
Q Consensus       217 ---------------~~~~~~~~~~~~~~~~~~g~~-----------------d~~i~v~d~~~~~~~~~-~--~~~---  258 (403)
                                     ...+++.++.+.+++.+ +..                 -+.|..+|.++++..-. +  .|.   
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~-~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd  308 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGT-GNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD  308 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEEC-CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEEC-CCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence                           12467788877666654 211                 02589999998776432 2  121   


Q ss_pred             ----CceEEEEEcCCC---CEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          259 ----SRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       259 ----~~i~~~~~sp~g---~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                          .....+....+|   ..|+.++.+|. |+++|..+|+.+..+.
T Consensus       309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          309 YTSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKN  354 (677)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             cccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEecccc
Confidence                112223333477   68899999999 9999999999987766

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.14  E-value=1.3e-08  Score=84.52  Aligned_cols=202  Identities=8%  Similarity=-0.036  Sum_probs=132.4

Q ss_pred             ceeEEEecCCc--eeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650          167 RCIGELSFRSE--VRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (403)
Q Consensus       167 ~~~~~~~~~~~--i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (403)
                      +.+.++.|...  ...+.|+.+..++.  .+|.|+++|+++++.+..+ . ........+.++++.+|+++  -.++.+.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~lt--w~~~~v~  119 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLT--WTEGLLF  119 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEE--SSSCEEE
T ss_pred             EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEE--ccCCEEE
Confidence            45566665443  46888885434444  3678999999999998887 3 33444455667788888775  4789999


Q ss_pred             EEEccCCcee-EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc---cEEEEEeCCCCCEE
Q 015650          243 VEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA---EIYSLAFSSNAQWL  318 (403)
Q Consensus       243 v~d~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~---~v~~l~~s~d~~~l  318 (403)
                      +||..+.+.. ++.. ...-..++  +|++.|+.+..++. |.++|..+.+.+..+....+..   .++.+.|. +|+.+
T Consensus       120 V~D~~Tl~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~-l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          120 TWSGMPPQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTM-LTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY  194 (268)
T ss_dssp             EEETTTTEEEEEEEC-SSCCCCEE--EETTEEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEECCcCcEEEEEeC-CCceeEEe--cCCCEEEEECCCCE-EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence            9999885543 4442 22223343  57888887777778 9999999999998887532222   45778886 77766


Q ss_pred             EEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEE
Q 015650          319 AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL  398 (403)
Q Consensus       319 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~  398 (403)
                      +....++.|.+.|.++++.+..++-                .++.+....      +.....+-.+.+||.|+++.|++.
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl----------------~~L~~~~~~------~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDA----------------SALTRAVAG------QVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEEC----------------HHHHHHHTT------TCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEEC----------------CCCcccccc------cccCcCCceEEEEEcCCCCEEEEe
Confidence            6666788999999999985332210                000000000      000112467889999998888776


Q ss_pred             c
Q 015650          399 G  399 (403)
Q Consensus       399 ~  399 (403)
                      +
T Consensus       253 G  253 (268)
T 3nok_A          253 G  253 (268)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.14  E-value=2.2e-08  Score=90.42  Aligned_cols=170  Identities=13%  Similarity=0.098  Sum_probs=109.0

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e------------cCeEEEEEcCCceeeeEeecc-------CC
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L------------EQKIFVYNFADLKLLHQIETI-------AN  215 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~------------d~~i~i~d~~~~~~~~~~~~~-------~~  215 (403)
                      +.|.++|..+++.+.++.....- .+.++||++.++ .            ++.|.++|..+++.+..+...       ..
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~  177 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT  177 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence            58999999999999999833333 899999998666 2            357999999999988887643       12


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee-EEeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcE
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~  293 (403)
                      .-..+.++++++.+|++.. ..++.|.++|+.+.++. .+.. .+.   ....|+| +.+++.+.||. +.+.+..+++.
T Consensus       178 ~P~~~~~spDGk~lyV~n~-~~~~~VsVID~~t~kvv~~I~v-~g~---~~~~p~g~~~~v~~~~dG~-~~~V~~~~~~v  251 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQF-SPAPAVGVVDLEGKTFDRMLDV-PDC---YHIFPASPTVFYMNCRDGS-LARVDFADGET  251 (426)
T ss_dssp             CGGGSEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEEC-CSE---EEEEEEETTEEEEEETTSS-EEEEECCTTCC
T ss_pred             CcceEEEcCCCCEEEEEec-CCCCeEEEEECCCCeEEEEEEc-CCc---eeeccCCCcEEEEEcCCCC-EEEEECCCCcE
Confidence            3457899999998877641 13678999999986653 3332 111   2223332 44455556666 66666644444


Q ss_pred             EEE----EecCCCccc-EEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          294 LQE----VRRGADRAE-IYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       294 ~~~----~~~~~~~~~-v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      ...    +...  ..+ ...+.|.+++..++.....+.|.+.|+..
T Consensus       252 ~~~~~~~~~v~--~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~  295 (426)
T 3c75_H          252 KVTNTEVFHTE--DELLINHPAFSLRSGRLVWPTYTGKIFQADLTA  295 (426)
T ss_dssp             EEEECCCCSCT--TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECS
T ss_pred             EEEeeeeeccC--CCceeeEeeecCCCCEEEEEeCCCcEEEEeccC
Confidence            321    1110  111 12345677777666666677777777754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=9.2e-08  Score=85.99  Aligned_cols=219  Identities=11%  Similarity=0.057  Sum_probs=134.8

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (403)
Q Consensus        96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~  175 (403)
                      ++.+++...++.|..+|.++++......+. ...  ....... ++..++.. .+     +.|..+|..+|+.+..+...
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~--~~~p~~~-~~~v~v~~-~~-----g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVA-GEA--LSRPVVS-DGLVLIHT-SN-----GQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECS-SCC--CSCCEEE-TTEEEEEC-TT-----SEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCC-Cce--EcCCEEE-CCEEEEEc-CC-----CeEEEEECCCCcEEEEEeCC
Confidence            444444444666999999988887665553 111  1111122 34444433 34     89999999999988887743


Q ss_pred             Cce------eEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCC----------c-eeEEEeeCCCeEEEEeeCC
Q 015650          176 SEV------RSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP----------K-GLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       176 ~~i------~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~g~  236 (403)
                      ..+      ...... ++.+++  .++.|..+|..+++.+.........          + ....+  .++.+++.   .
T Consensus       173 ~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~---~  246 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFAL---A  246 (376)
T ss_dssp             C-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEE---C
T ss_pred             CCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEE---e
Confidence            332      222333 455555  4789999999999888776532110          1 11111  23444443   3


Q ss_pred             ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 015650          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (403)
Q Consensus       237 ~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  316 (403)
                      .++.+..+|.++++...... ......+..  ++..|+.++.++. |..+|..+++.+...... ....+..+..  .+.
T Consensus       247 ~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~~  319 (376)
T 3q7m_A          247 YNGNLTALDLRSGQIMWKRE-LGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDL-LHRLLTSPVL--YNG  319 (376)
T ss_dssp             TTSCEEEEETTTCCEEEEEC-CCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTT-TTSCCCCCEE--ETT
T ss_pred             cCcEEEEEECCCCcEEeecc-CCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeeccc-CCCcccCCEE--ECC
Confidence            67899999998876543322 223444444  4667888888999 999999999987666521 1122222233  356


Q ss_pred             EEEEEeCCCcEEEEEeecCCC
Q 015650          317 WLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       317 ~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .|+.++.+|.|+++|.++++.
T Consensus       320 ~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          320 NLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCeEEEEECCCCcE
Confidence            788889999999999999873

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=1.3e-07  Score=85.03  Aligned_cols=222  Identities=9%  Similarity=0.083  Sum_probs=135.6

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCc------ceeE-EEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGG------GIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~------~~~v-~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~  168 (403)
                      +..|.+++ ++.|..||.++++......+....      ...+ ..+....+..++.+  .+     +.|..+|..+|+.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~~-----g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS--EK-----AQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE--TT-----SEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc--CC-----CEEEEEECCCCCE
Confidence            44555555 556999999888887666553110      1222 23334444444433  33     8999999999998


Q ss_pred             eEEEecCCcee-EEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCc-----eeEEEeeCCCeEEEEeeCCccCe
Q 015650          169 IGELSFRSEVR-SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       169 ~~~~~~~~~i~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      +..+.....+. ..... ++.+++  .++.|+.+|.++++.+..+.......     ....+.  ++.+++   +..++.
T Consensus       126 ~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~---g~~~g~  199 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVV---GGDNGR  199 (376)
T ss_dssp             EEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEE---CCTTTE
T ss_pred             EEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEE---EcCCCE
Confidence            88777433332 22333 455555  48899999999999887775432211     122222  333333   346789


Q ss_pred             EEEEEccCCceeEEeecCCc-----eE---EEEEcC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          241 VRVEHYASKRTKFIMAHDSR-----IA---CFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       241 i~v~d~~~~~~~~~~~~~~~-----i~---~~~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      +..+|..+++..-......+     +.   .+.-.|  .+..++.++.++. |..+|.++++.+.....    .....+.
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~----~~~~~~~  274 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKREL----GSVNDFI  274 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECC----CCEEEEE
T ss_pred             EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccC----CCCCCce
Confidence            99999988665433221110     00   011111  3456777888898 99999999998866653    2344444


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      .  ++..|+.++.++.|..+|..+++..
T Consensus       275 ~--~~~~l~~~~~~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          275 V--DGNRIYLVDQNDRVMALTIDGGVTL  300 (376)
T ss_dssp             E--ETTEEEEEETTCCEEEEETTTCCEE
T ss_pred             E--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence            4  4667888888999999999998853

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.11  E-value=1.7e-08  Score=93.43  Aligned_cols=184  Identities=11%  Similarity=0.036  Sum_probs=129.5

Q ss_pred             CeEEEeeC-CCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEE-e-cCceEEE-e--------------------c
Q 015650          140 NILALVGG-GPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKL-R-RDRIIVV-L--------------------E  193 (403)
Q Consensus       140 ~~~~~~s~-~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~-~-~~~~~~~-~--------------------d  193 (403)
                      |+.++... ..+     +.|.+.|+.+.++.+.+.  ....+..+++ . |++.+++ .                    +
T Consensus       100 DG~~lfVnd~~~-----~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A          100 DGRFLFMNDKAN-----TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEETTT-----TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             CCCEEEEEcCCC-----CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence            55554443 334     789999999999888555  4566888887 4 8887776 2                    2


Q ss_pred             CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCcc-----------------------------------
Q 015650          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-----------------------------------  238 (403)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-----------------------------------  238 (403)
                      +.+.++|..+.+...++.... .-..++++++++..++.+..++.                                   
T Consensus       175 ~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             ceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            479999999999988887644 34678899999887776633211                                   


Q ss_pred             CeEEEEEccC--Cce--eEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCc------------EEEEEecCC
Q 015650          239 GQVRVEHYAS--KRT--KFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT------------LLQEVRRGA  301 (403)
Q Consensus       239 ~~i~v~d~~~--~~~--~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~------------~~~~~~~~~  301 (403)
                      +.|.+.|.++  +..  ..+.. .....++.++|||+++++++. +.+ |.++|+.+.+            ....+..  
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l~~~~~v~~~v~v--  329 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENADPRSAVVAEPEL--  329 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCCCGGGGEEECCBC--
T ss_pred             CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCe-EEEEECcccccccccccCcccceEEEcCC--
Confidence            2356666665  222  22322 234578999999999877665 556 9999998653            4445543  


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                       ......++|++||...++.-.|+.|.+||+++
T Consensus       330 -G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 -GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             -CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             -CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence             25688999999994344555899999999988

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.10  E-value=4.7e-09  Score=93.23  Aligned_cols=89  Identities=7%  Similarity=-0.049  Sum_probs=69.7

Q ss_pred             eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE-e------------cCeEEEEEcCCceeeeEeeccC-------C
Q 015650          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L------------EQKIFVYNFADLKLLHQIETIA-------N  215 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~------------d~~i~i~d~~~~~~~~~~~~~~-------~  215 (403)
                      .|.++|..+++.+.++. ...+  .+.++||++.++ .            ++.|.+||+.+++.+.++....       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            88899999999999998 4444  899999998766 3            4689999999999999986541       2


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEE--EEccC
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYAS  248 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v--~d~~~  248 (403)
                      .-..++++|+++.+|++..+ ....+.+  +|..+
T Consensus       125 ~P~~ia~SpDGk~lyVan~~-~~~~v~V~~iD~~t  158 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFG-SSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECS-SSCEEEEEETTTEE
T ss_pred             CcceEEEcCCCCEEEEEccC-CCCeEEEEEEchhh
Confidence            34689999999988876522 2456777  88765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=4.7e-08  Score=81.10  Aligned_cols=190  Identities=12%  Similarity=0.153  Sum_probs=127.7

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCcee--EEEEecCceEEEe--cCeEE
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR--SVKLRRDRIIVVL--EQKIF  197 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~--d~~i~  197 (403)
                      .++......-...+.|+. +.++.+.+.+   ....|+++|+++++.+..+.......  .+++..+..+++.  ++.+.
T Consensus        35 ~~~phd~~~ftqGL~~~~-~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           35 HSYPHDTKAFTEGFFYRN-GYFYESTGLN---GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEECCTTCEEEEEEEET-TEEEEEEEET---TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEecCCCCcccceEEEEC-CEEEEECCCC---CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence            444422334457788884 4555555544   00389999999999999988544543  4566656555554  88999


Q ss_pred             EEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEee--cC---CceEEEEEcCCCC
Q 015650          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HD---SRIACFALTQDGQ  271 (403)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~--~~---~~i~~~~~sp~g~  271 (403)
                      +||.++.+.+.++....   ....++++++.+++. .|  ++.|.++|..+.++ ..+..  ..   ..++.+.|. +|+
T Consensus       111 v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~S-dG--s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMS-DG--TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EEETTTCCEEEEEECSS---CCCCEEECSSCEEEC-CS--SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECccCcEEEEEECCC---CceEEecCCCEEEEE-CC--CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence            99999999999987543   224555777765543 23  57899999987443 33332  12   334567776 776


Q ss_pred             EEEEEeCCCcEEEEEEcCCCcEEEEEecCCC----------cccEEEEEeCCCCCEEEEEeC
Q 015650          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----------RAEIYSLAFSSNAQWLAVSSD  323 (403)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~----------~~~v~~l~~s~d~~~l~s~~~  323 (403)
                      +.+..-.++. |.+.|.++++.+..+....-          ....+.|+|+|+++.|++.+.
T Consensus       184 lyan~w~~~~-I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          184 IFANVWQTNK-IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEETTSSE-EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEccCCe-EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            5544445666 99999999999998875311          135689999999888776663

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.09  E-value=1.3e-07  Score=91.72  Aligned_cols=192  Identities=14%  Similarity=0.112  Sum_probs=115.6

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce-------e-EEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-------G-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      ++.+++++.++.|..+|..+++.+...........       . ...+....+ ..++ +..+     +.|..+|.++|+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~v~v-~~~d-----g~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKG-KVYV-GVLD-----GRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETT-EEEE-ECTT-----SEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECC-EEEE-EccC-----CEEEEEECCCCC
Confidence            44444444456699999999988876554311100       0 011222333 3333 3345     899999999999


Q ss_pred             eeEEEecC-C--ceeEEEEec---CceEEE-e-------cCeEEEEEcCCceeeeEeeccC-------------------
Q 015650          168 CIGELSFR-S--EVRSVKLRR---DRIIVV-L-------EQKIFVYNFADLKLLHQIETIA-------------------  214 (403)
Q Consensus       168 ~~~~~~~~-~--~i~~~~~~~---~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~-------------------  214 (403)
                      .+..+... .  ....+...|   ++.+++ .       ++.|+.||.++|+.+..+....                   
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            98877632 1  111111122   566666 2       5799999999999988775311                   


Q ss_pred             ------------CCceeEEEeeCCCeEEEEeeCCccC-------------------eEEEEEccCCceeEE-ee--cC--
Q 015650          215 ------------NPKGLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEHYASKRTKFI-MA--HD--  258 (403)
Q Consensus       215 ------------~~~~~~~~~~~~~~~~~~~~g~~d~-------------------~i~v~d~~~~~~~~~-~~--~~--  258 (403)
                                  .....+++.++.+.+++.+   .++                   .|..+|.++++..-. +.  |.  
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w  299 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGV---GNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW  299 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEEeC---CCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc
Confidence                        0112467777777655543   233                   499999998776432 22  22  


Q ss_pred             -----CceEEEEEcCCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          259 -----SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       259 -----~~i~~~~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                           ..+.......+|+   .++.++.+|. ++++|.++|+.+....
T Consensus       300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~  346 (689)
T 1yiq_A          300 DYTATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAKG  346 (689)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             cccCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEecccc
Confidence                 1122222223665   7889999999 9999999999885443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.08  E-value=4.9e-07  Score=77.04  Aligned_cols=216  Identities=5%  Similarity=-0.090  Sum_probs=136.1

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEE
Q 015650           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      ..+..++|++++..|..+.  .+.|.+++.+.....  ..+. ........++++++ +.++++....     +.|.+++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~~  107 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIR-QDLGSPEGIALDHLGRTIFWTDSQL-----DRIEVAK  107 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEEC-TTCCCEEEEEEETTTTEEEEEETTT-----TEEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEE-CCCCCccEEEEEecCCeEEEEECCC-----CEEEEEE
Confidence            3567899999776666554  344999998765432  2222 22245677888863 4555555444     7899999


Q ss_pred             CCCCceeEEEe-cCCceeEEEEecC-ceEEEe-----cCeEEEEEcCCceeeeEee-ccCCCceeEEEeeCCCeEEEEee
Q 015650          163 DHQSRCIGELS-FRSEVRSVKLRRD-RIIVVL-----EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       163 ~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~~-----d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      +.......... .......++++|+ +.+.+.     .+.|..+++.. +....+. ........++++++++.+|++. 
T Consensus       108 ~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d-  185 (267)
T 1npe_A          108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVD-  185 (267)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEE-
T ss_pred             cCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEE-
Confidence            76443222222 2256789999995 554443     25788888753 3333332 2223446789999888887775 


Q ss_pred             CCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                       ...+.|.++|........+.........++..  +..|+.+.. .+. |.++|..+++.+..+..+. ......|++.|
T Consensus       186 -~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~-v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~  260 (267)
T 1npe_A          186 -AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPHK-QTRLYGITIAL  260 (267)
T ss_dssp             -TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred             -CCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe-EEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence             34679999999875544433333344667664  455555554 566 9999999999988887431 12467788887


Q ss_pred             CCC
Q 015650          314 NAQ  316 (403)
Q Consensus       314 d~~  316 (403)
                      ++.
T Consensus       261 ~~~  263 (267)
T 1npe_A          261 SQC  263 (267)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.06  E-value=4.2e-07  Score=79.77  Aligned_cols=236  Identities=9%  Similarity=0.042  Sum_probs=146.0

Q ss_pred             CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEeccc----------------CcceeEEEEeeeC-CeEEEeeCC
Q 015650           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFER----------------GGGIGVVEMLFRC-NILALVGGG  148 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~-~~~~~~s~~  148 (403)
                      ...+++|.++|.++.++. ++.|..|+..+...........                ........+++.+ ++.++++..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            345678999998676666 4558888876543321111000                0112467888886 666555543


Q ss_pred             CCCCCCCceEEEEECCCCceeEEEe------cCCceeEEEEec-CceEEEec--------------------CeEEEEEc
Q 015650          149 PDPQYPLNKVMIWDDHQSRCIGELS------FRSEVRSVKLRR-DRIIVVLE--------------------QKIFVYNF  201 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~~~~~~~~------~~~~i~~~~~~~-~~~~~~~d--------------------~~i~i~d~  201 (403)
                      .      +.|..+|..+++. ..+.      .......+++.+ +|.+.+.|                    +.|+.||.
T Consensus       100 ~------~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A          100 Y------YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             T------TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             C------CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            3      3488888765542 2222      113467899999 88777642                    56888998


Q ss_pred             CCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC---ceeEEeecCCceEEEEEcCCCCEEEEEeC
Q 015650          202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSST  278 (403)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~---~~~~~~~~~~~i~~~~~sp~g~~l~s~~~  278 (403)
                      .+++....... ......++++++++.++++-  ...+.|.+|++...   ....+....+ ...++++++|++.++...
T Consensus       173 ~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d--~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLLLKE-LHVPGGAEVSADSSFVLVAE--FLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEEEEE-ESCCCEEEECTTSSEEEEEE--GGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEeccC-CccCcceEECCCCCEEEEEe--CCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            76654333222 22335689999988777764  34678999998752   2233222233 788999999987766544


Q ss_pred             ----------CCcEEEEEEcCCCcEEEEEecCCC--cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          279 ----------KGTLVRIFNTLDGTLLQEVRRGAD--RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       279 ----------dg~~i~iwd~~~~~~~~~~~~~~~--~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                                .+. |..+|. .++.+..+.....  ...+..+++ .+++++++....+.|..+++....
T Consensus       249 ~~~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          249 ELDGNMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             ETTSSTTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             cccccccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence                      356 888885 5888777764311  234666776 466656665678889999987554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.05  E-value=3.8e-07  Score=75.70  Aligned_cols=186  Identities=10%  Similarity=0.074  Sum_probs=125.9

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeE--EEEecCceEEEe--cCeEE
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIF  197 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~--d~~i~  197 (403)
                      .++..........+.|+.+.++ ++.+.+     |.|+++|+++++.+..+ .......  +++..+..+++.  ++.+.
T Consensus        47 ~~~phd~~~ftqGL~~~~~~Ly-~stG~~-----g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           47 REYPHATNAFTQGLVFHQGHFF-ESTGHQ-----GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEECCTTCCEEEEEEETTEEE-EEETTT-----TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred             EEEcCCCccccceEEEECCEEE-EEcCCC-----CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEE
Confidence            3444223344567888865544 455555     78999999999998887 5555544  666666666664  89999


Q ss_pred             EEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEee--cCC---ceEEEEEcCCCC
Q 015650          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HDS---RIACFALTQDGQ  271 (403)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~--~~~---~i~~~~~sp~g~  271 (403)
                      +||.++++.+.++......   ..++++++.+++.. |  ++.|.++|..+.++ ..+..  +..   .++.+.|. +|+
T Consensus       120 V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSd-G--s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~  192 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSD-G--GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV  192 (268)
T ss_dssp             EEETTTTEEEEEEECSSCC---CCEEEETTEEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECCcCcEEEEEeCCCce---eEEecCCCEEEEEC-C--CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence            9999999999998754332   34457777665543 3  68999999888543 33332  222   34667776 776


Q ss_pred             EEEEEeCCCcEEEEEEcCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEe
Q 015650          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      +.+..-.+.. |.+.|.++++.+..+....           .....+.|+|+|+++.|++.+
T Consensus       193 lyanvw~s~~-I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          193 IYANIWHSSD-VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEETTCSE-EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCe-EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            4444434666 9999999999999887421           113678999999877665554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.04  E-value=2.9e-10  Score=102.04  Aligned_cols=183  Identities=13%  Similarity=0.052  Sum_probs=93.7

Q ss_pred             CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec
Q 015650           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (403)
Q Consensus        96 d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~  174 (403)
                      ++..|++++ ++.|+.||..+++.......     ..+.+..+..++..++.++.|     +.|+.||.++|+.+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTT-----CCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeeeec
Confidence            456677766 55699999999888754433     122233333455556666666     9999999999987766542


Q ss_pred             C--Ccee-EEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC
Q 015650          175 R--SEVR-SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (403)
Q Consensus       175 ~--~~i~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~  249 (403)
                      .  ..+. ...+..++.+++  .++.|+.||.++|+.+..+..+.    ...++|+++.+++.   +.++.|+.||.+++
T Consensus        78 ~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~---~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           78 TIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLG---RTEYTITMYDTKTR  150 (369)
T ss_dssp             CHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEE---EEEEEEECCCSSSS
T ss_pred             cCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEE---ecCCEEEEEECCCC
Confidence            1  1111 111113444433  58899999999999888776543    23445555544433   47899999999886


Q ss_pred             cee-EEeecCCceEEEEEcCCC---CEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          250 RTK-FIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       250 ~~~-~~~~~~~~i~~~~~sp~g---~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      +.. .+..+.  .....++.+.   ..+++++.+|. |+.||..+|+.+-.+.
T Consensus       151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQN  200 (369)
T ss_dssp             SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEE
T ss_pred             CEEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEec
Confidence            542 222111  1223334332   45677888999 9999999999877766

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.03  E-value=6.4e-11  Score=106.30  Aligned_cols=167  Identities=12%  Similarity=0.023  Sum_probs=92.6

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCC-c-eeEEEeeCCCeEE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANP-K-GLCAVSQGVGSLV  230 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~  230 (403)
                      +.|+.||..+|+.+..+.. ..+.+..+..++.+++   .|+.|+.||.++|+.+..+..+... + ....+. .++.  
T Consensus        19 g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~--   94 (369)
T 2hz6_A           19 GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGI--   94 (369)
T ss_dssp             SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC--------
T ss_pred             CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCE--
Confidence            8999999999999988876 5565555556664444   4899999999998877665432110 0 001111 2222  


Q ss_pred             EEeeCCccCeEEEEEccCCceeE-EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                      ++ .|+.++.|+.||.++++... +..+.    ...++|++..|++++.++. |+.||.++|+.+..+...    .....
T Consensus        95 v~-~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~~----~~~~~  164 (369)
T 2hz6_A           95 LY-MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTRELRWNATYF----DYAAS  164 (369)
T ss_dssp             CC-CCEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSSSCCCEEEEE----EECCB
T ss_pred             EE-EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCCCEEEeEecc----cccCc
Confidence            22 24578999999999866533 22222    2356678889999999999 999999999876665421    12233


Q ss_pred             EeCCCC---CEEEEEeCCCcEEEEEeecCC
Q 015650          310 AFSSNA---QWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       310 ~~s~d~---~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .+..+.   ..+++++.||.|+.||.++++
T Consensus       165 ~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          165 LPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             CCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             cccCCccccceEEEECCCCEEEEEECCCCc
Confidence            344432   457778899999999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=4.1e-08  Score=86.41  Aligned_cols=219  Identities=12%  Similarity=0.025  Sum_probs=141.8

Q ss_pred             CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-
Q 015650           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-  173 (403)
Q Consensus        96 d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-  173 (403)
                      ++. |.+++ +++|..++.. ++.......   ....+..+....++..+++. .+     +.|..+|.. ++.+..+. 
T Consensus       107 ~~~-l~v~t~~~~l~~~d~~-g~~~~~~~~---~~~~~~~~~~~~~g~l~vgt-~~-----~~l~~~d~~-g~~~~~~~~  174 (330)
T 3hxj_A          107 EDI-LYVTSMDGHLYAINTD-GTEKWRFKT---KKAIYATPIVSEDGTIYVGS-ND-----NYLYAINPD-GTEKWRFKT  174 (330)
T ss_dssp             TTE-EEEECTTSEEEEECTT-SCEEEEEEC---SSCCCSCCEECTTSCEEEEC-TT-----SEEEEECTT-SCEEEEEEC
T ss_pred             CCE-EEEEecCCEEEEEcCC-CCEEEEEcC---CCceeeeeEEcCCCEEEEEc-CC-----CEEEEECCC-CCEeEEEec
Confidence            444 44555 6679999987 555443333   22233444555555555544 33     789999988 88777776 


Q ss_pred             cCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE
Q 015650          174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF  253 (403)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~  253 (403)
                      ....+.++...+++.+.+..+.|..+| .+++.+..+......+..+.+..++ .+++++   .++.|..+|........
T Consensus       175 ~~~~~~~~~~d~~g~l~v~t~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t---~~~gl~~~~~~g~~~~~  249 (330)
T 3hxj_A          175 NDAITSAASIGKDGTIYFGSDKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-TIYVTS---LDGHLYAINPDGTEKWR  249 (330)
T ss_dssp             SSCCCSCCEECTTCCEEEESSSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-CEEEEE---TTTEEEEECTTSCEEEE
T ss_pred             CCCceeeeEEcCCCEEEEEeCEEEEEC-CCCcEEEEEccCCcceeceEECCCC-eEEEEc---CCCeEEEECCCCCEeEE
Confidence            455677788877777666339999999 7777777666555556666666554 444443   46778888765555555


Q ss_pred             EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       254 ~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      +......+..+.+.+++. |+.++.++. |..+|. +++.+..+..  ....+.++...++|. |..++.+|.+++...+
T Consensus       250 ~~~~~~~~~~~~~~~~g~-l~v~t~~gg-l~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          250 FKTGKRIESSPVIGNTDT-IYFGSYDGH-LYAINP-DGTEKWNFET--GSWIIATPVIDENGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             EECSSCCCSCCEECTTSC-EEEECTTCE-EEEECT-TSCEEEEEEC--SSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred             eeCCCCccccceEcCCCe-EEEecCCCC-EEEECC-CCcEEEEEEc--CCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence            544444455566766665 666788888 999995 7887776664  335677788878876 4558889999998877


Q ss_pred             cCCC
Q 015650          334 VNSG  337 (403)
Q Consensus       334 ~~~~  337 (403)
                      ..+.
T Consensus       324 ~~~~  327 (330)
T 3hxj_A          324 EHHH  327 (330)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6553

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.02  E-value=5.9e-07  Score=73.93  Aligned_cols=189  Identities=15%  Similarity=0.167  Sum_probs=127.4

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCcee--EEEEecCceEEEe--cCeEE
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR--SVKLRRDRIIVVL--EQKIF  197 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~--d~~i~  197 (403)
                      ..+..........+.|+++.++..++...    ...|+.+|+.+++.+..+.......  .+++..+..+.+.  ++.+.
T Consensus        13 ~~~phd~~~ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           13 KRYPHDTTAFTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEECCTTCCEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEcCCCCccccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence            44442344556788888865555544421    1489999999999999988544443  4555555555553  89999


Q ss_pred             EEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEee--cC---CceEEEEEcCCCC
Q 015650          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HD---SRIACFALTQDGQ  271 (403)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~--~~---~~i~~~~~sp~g~  271 (403)
                      +||.++.+.+.++.....   ...+.++++.+++.- |  ++.|.++|..+.+. ..+.-  +.   ..++.+.+. +|+
T Consensus        89 v~D~~tl~~~~ti~~~~~---Gwglt~dg~~L~vSd-g--s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGE---GWALTSDDSHLYMSD-G--TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEETTTTEEEEEEECSSC---CCEEEECSSCEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECCcCcEEEEEeCCCC---ceEEeeCCCEEEEEC-C--CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence            999999999999875433   345557777665543 3  67899999888443 33332  22   234566665 666


Q ss_pred             EEEEEeCCCcEEEEEEcCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEe
Q 015650          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      +++..-.+.. |.+.|.++++.+..+....           .....+.|+++|+++.|++.+
T Consensus       162 lyanvw~s~~-I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          162 LLANVWLTSR-IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEETTTTE-EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCe-EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            5544434566 9999999999999887431           123678999999888776665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.01  E-value=1.3e-08  Score=89.62  Aligned_cols=214  Identities=13%  Similarity=0.073  Sum_probs=134.3

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeE
Q 015650           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (403)
Q Consensus        91 i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~  170 (403)
                      +.+..+|.+.+...+++|..|| .+++...  ... .....+.++....++..+++..       + |..+|. +++.+.
T Consensus        25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~--~~~-~~~~~~~~~~~~~~g~l~v~t~-------~-l~~~d~-~g~~~~   91 (330)
T 3hxj_A           25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKW--FFK-SGEIIECRPSIGKDGTIYFGSD-------K-VYAINP-DGTEKW   91 (330)
T ss_dssp             CEECTTSCEECSSTTTTTEEEC-TTSCEEE--SSC-GGGEEEECCEETTTTEECCSSC-------E-EEEECC-CGGGGG
T ss_pred             ceEccCCeEEEEcCCCEEEEEC-CCCcEEE--EEe-cCCCcccceEEecCCcEEEecC-------c-EEEECC-CCcEEE
Confidence            4455667665554577799999 6666543  332 2334456666666777666543       6 888885 666554


Q ss_pred             EEe-cCCceeEEEEecCceEEE-e-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          171 ELS-FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       171 ~~~-~~~~i~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      .+. .........+. ++.+.+ . ++.|+.+|.. ++...........+..+....++. +++.   ..++.|..+|..
T Consensus        92 ~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vg---t~~~~l~~~d~~  165 (330)
T 3hxj_A           92 RFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVG---SNDNYLYAINPD  165 (330)
T ss_dssp             GSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEE---CTTSEEEEECTT
T ss_pred             EEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEE---cCCCEEEEECCC
Confidence            444 22222333344 555554 3 7899999988 777766655544455555554443 4443   356899999988


Q ss_pred             CCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          248 SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                      .............+.++.+.++|.+++ ++  +. |..+| .+++.+..+..  ....+.++...++|.++ .++.++.|
T Consensus       166 g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~-l~~~d-~~g~~~~~~~~--~~~~~~~~~~~~~g~l~-v~t~~~gl  237 (330)
T 3hxj_A          166 GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DK-VYAIN-PDGTEKWNFYA--GYWTVTRPAISEDGTIY-VTSLDGHL  237 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SS-EEEEC-TTSCEEEEECC--SSCCCSCCEECTTSCEE-EEETTTEE
T ss_pred             CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CE-EEEEC-CCCcEEEEEcc--CCcceeceEECCCCeEE-EEcCCCeE
Confidence            333344444455677788888887555 44  66 99999 78887766653  33567888888887654 45567777


Q ss_pred             EEEE
Q 015650          328 HVFN  331 (403)
Q Consensus       328 ~iwd  331 (403)
                      ..++
T Consensus       238 ~~~~  241 (330)
T 3hxj_A          238 YAIN  241 (330)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.01  E-value=1.5e-06  Score=86.12  Aligned_cols=234  Identities=10%  Similarity=0.124  Sum_probs=150.8

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      |.++...++|.+.+...+++|..|+..+.+...  .........+.++....++.+.++...      +-|.+||..+++
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~--~~~~~~~~~i~~i~~d~~g~lwigt~~------~Gl~~~~~~~~~  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEK--VIPILGTKQIQAILQQSPTRIWVATEG------AGLFLINPKTKE  246 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEE--CC----CCCEEEEEEEETTEEEEEEBS------SCEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEE--ecCCCCCCeeEEEEEcCCCCEEEEECC------CCeEEEeCCCCe
Confidence            888888888877775445689999976654331  111123456778887777666665433      348899977665


Q ss_pred             eeEEEec---------CCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeec-------cCCCceeEEEeeCCCeEE
Q 015650          168 CIGELSF---------RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIET-------IANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       168 ~~~~~~~---------~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  230 (403)
                      .. .+.+         ...|.++...++|.+.+ +++-|.+||..+++.......       ....+..+....++ .++
T Consensus       247 ~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lW  324 (795)
T 4a2l_A          247 IK-NYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-GMW  324 (795)
T ss_dssp             EE-EECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-CEE
T ss_pred             EE-EeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-CEE
Confidence            43 2321         35688999988887666 666899999877654332211       12344555555544 344


Q ss_pred             EEeeCCccCeEEEEEccCCceeEEee-------cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec----
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR----  299 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~~~~-------~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~----  299 (403)
                      +.+   .++-|..|+........+..       ....|.++..+++|. |..|+.++. |..||..+++.......    
T Consensus       325 igt---~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~G-l~~~~~~~~~~~~~~~~~~~~  399 (795)
T 4a2l_A          325 LGT---YFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGG-LNLYNPITQRFTSYTLQEDES  399 (795)
T ss_dssp             EEE---SSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSC-EEEECTTTCCEEEECCC----
T ss_pred             EEE---CCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCC-eEEEcCCCCcEEEEecCCCCc
Confidence            443   55778888877665544432       234689999998887 455777777 99999877665432211    


Q ss_pred             --CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          300 --GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       300 --~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                        ......|.++...++|+.|..|+.++-|.+||.++++
T Consensus       400 ~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          400 ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             --CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence              0123579999998898856667777779999987765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.97  E-value=4.5e-07  Score=74.63  Aligned_cols=204  Identities=10%  Similarity=0.061  Sum_probs=132.4

Q ss_pred             ceeEEEecCC--ceeEEEEecCceEEEe----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650          167 RCIGELSFRS--EVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       167 ~~~~~~~~~~--~i~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      +.+.++.|..  -...+.|+.+..+...    ++.|+.+|+.+++.+..+..... .....+...++.++.++  -.++.
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~lt--w~~~~   86 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLT--WRNHE   86 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEE--SSSSE
T ss_pred             EEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEE--eeCCE
Confidence            4566777644  4568999874333332    24899999999999888865433 34445566678887775  47899


Q ss_pred             EEEEEccCCcee-EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc---ccEEEEEeCCCCC
Q 015650          241 VRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNAQ  316 (403)
Q Consensus       241 i~v~d~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~---~~v~~l~~s~d~~  316 (403)
                      +.+||..+.+.. ++.. ...-..++  +++..|+.+..++. |.++|..+.+.+..+....+.   ..++.+.|. +|+
T Consensus        87 v~v~D~~tl~~~~ti~~-~~~Gwglt--~dg~~L~vSdgs~~-l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRY-PGEGWALT--SDDSHLYMSDGTAV-IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEEEETTTTEEEEEEEC-SSCCCEEE--ECSSCEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEECCcCcEEEEEeC-CCCceEEe--eCCCEEEEECCCCe-EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence            999999885543 4432 22223444  57777777666777 999999999999888753222   245677775 777


Q ss_pred             EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEE
Q 015650          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV  396 (403)
Q Consensus       317 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~  396 (403)
                      .++....+..|.+.|.++++.+..++..                ++.+....    .  .....+..+.+||+|+++.|+
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~idl~----------------~l~~~~~~----~--~~~~~~vlNGIA~d~~~~~lf  219 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAWIDLQ----------------ALVPDADA----L--TDSTNDVLNGIAFDAEHDRLF  219 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEEEECG----------------GGSTTTTS----C--CCTTSSCEEEEEEETTTTEEE
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEEECC----------------cCcccccc----c--cCCcCCceEEEEEcCCCCEEE
Confidence            6666657889999999999854333210                01110000    0  000123568899999998888


Q ss_pred             EEcc
Q 015650          397 ILGM  400 (403)
Q Consensus       397 ~~~~  400 (403)
                      +.+.
T Consensus       220 VTGK  223 (243)
T 3mbr_X          220 VTGK  223 (243)
T ss_dssp             EEET
T ss_pred             EECC
Confidence            7653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.95  E-value=3.1e-07  Score=87.05  Aligned_cols=230  Identities=7%  Similarity=-0.015  Sum_probs=138.3

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcce--eEE-EEeeeCCeEEEeeCCC-----CCCCCCceEEEEECCCCc
Q 015650           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI--GVV-EMLFRCNILALVGGGP-----DPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~--~v~-~~~~~~~~~~~~s~~~-----d~~~~~~~i~iwd~~~~~  167 (403)
                      +..|++++ ++.|..+|..+++......+. .+..  .+. ..... ++..++....     +     +.|..+|..+|+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~-----g~v~a~D~~tG~  187 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVC-DPKVGSTLTQAPFVA-KDTVLMGCSGAELGVR-----GAVNAFDLKTGE  187 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEEECBCGGGTCC-----CEEEEEETTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCC-CCCccceeccCCEEE-CCEEEEEecCCccCCC-----CEEEEEECCCCc
Confidence            34555555 556999999999888766654 2110  111 11112 3444444432     4     899999999999


Q ss_pred             eeEEEecCCce---------------------------------------eEEEEecC-ceEEE-e-c------------
Q 015650          168 CIGELSFRSEV---------------------------------------RSVKLRRD-RIIVV-L-E------------  193 (403)
Q Consensus       168 ~~~~~~~~~~i---------------------------------------~~~~~~~~-~~~~~-~-d------------  193 (403)
                      .+..+......                                       ..+++.++ +.+++ . +            
T Consensus       188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd  267 (571)
T 2ad6_A          188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD  267 (571)
T ss_dssp             EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred             EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence            98887632211                                       12455554 33333 2 1            


Q ss_pred             ----CeEEEEEcCCceeeeEeeccCC------Ccee---EEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC--
Q 015650          194 ----QKIFVYNFADLKLLHQIETIAN------PKGL---CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD--  258 (403)
Q Consensus       194 ----~~i~i~d~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~--  258 (403)
                          +.|..+|.++|+.+..++...+      ....   .....+++...++..+..+|.++++|..++++.......  
T Consensus       268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~  347 (571)
T 2ad6_A          268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence                2599999999999888764321      1111   222235542122222457899999998886653221100  


Q ss_pred             ------------Cce--------------------------EEEEEcCCCCEEEEEeC----------------------
Q 015650          259 ------------SRI--------------------------ACFALTQDGQLLATSST----------------------  278 (403)
Q Consensus       259 ------------~~i--------------------------~~~~~sp~g~~l~s~~~----------------------  278 (403)
                                  .++                          ..++++|+..+|+..+.                      
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence                        111                          24678888777776542                      


Q ss_pred             ---------------CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          279 ---------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       279 ---------------dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                                     ++. |..||+.+++.+-++...   ..+.+..+...+..++.++.||.|+.||.++++.
T Consensus       428 ~~~~~~~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEEECTTSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceeccCccccCCCCCCe-EEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                           467 999999999988777642   2222222233466777899999999999999984

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.89  E-value=5.6e-06  Score=71.97  Aligned_cols=226  Identities=12%  Similarity=0.031  Sum_probs=135.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC-CCCCCCCceEEEEEC
Q 015650           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDD  163 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~i~iwd~  163 (403)
                      .....++|+++|+++++... +.|..|+.+... .  ..+.  .......+++.+++.++++.. .+    ...|..++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~--~~~~--~~~~p~gia~~~dG~l~vad~~~~----~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q--IHAT--VEGKVSGLAFTSNGDLVATGWNAD----SIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E--EEEE--CSSEEEEEEECTTSCEEEEEECTT----SCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-E--EEEe--CCCCceeEEEcCCCcEEEEeccCC----cceEEEEcC
Confidence            45778999999997777654 448888876532 2  2222  223577888888876555542 21    024777777


Q ss_pred             CCCceeEEEec--CCceeEEEEecCceEEEe---cCeEEEEEcCCcee-eeEeec-------cCCCceeEEEeeCCCeEE
Q 015650          164 HQSRCIGELSF--RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL-LHQIET-------IANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       164 ~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~  230 (403)
                      .+++.......  ......++..+++..++.   ++.|+++|...++. +.....       .......-.++++++.+|
T Consensus       103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~ly  182 (306)
T 2p4o_A          103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  182 (306)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEE
Confidence            77775443332  223345555566665553   67899999765421 111110       011111222388887777


Q ss_pred             EEeeCCccCeEEEEEccC-Cce---eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccE
Q 015650          231 LVCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~-~~~---~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (403)
                      ++-  ...+.|.+|++.. +..   ..+. .......++++++|+++++....+. |.++|.. ++..............
T Consensus       183 v~d--~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          183 VSN--TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQGVIGS  257 (306)
T ss_dssp             EEE--TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGGTCTTE
T ss_pred             EEe--CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCe-EEEECCC-CCEEEEeecccccCCc
Confidence            765  3568899999874 222   2221 1234577899999987776666777 9999964 6653322211122468


Q ss_pred             EEEEeC---CCCCEEEEEeCCC
Q 015650          307 YSLAFS---SNAQWLAVSSDKG  325 (403)
Q Consensus       307 ~~l~~s---~d~~~l~s~~~dg  325 (403)
                      ++++|.   ||++.|++++..+
T Consensus       258 ~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEECTT
T ss_pred             eEEEEecccCCCCEEEEECCCC
Confidence            999998   8988777666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.89  E-value=9.8e-06  Score=80.33  Aligned_cols=236  Identities=10%  Similarity=0.056  Sum_probs=151.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecc----cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      ...|.++...++|.+.+.. ++||.+|+..+..........    .-....|.++....++...++...      +-|..
T Consensus       262 ~~~i~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~------~Gl~~  334 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWIGT-FNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYF------GGLNY  334 (795)
T ss_dssp             CSBEEEEEECTTSCEEEEE-SSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESS------SCEEE
T ss_pred             CCeEEEEEEcCCCCEEEEe-CChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECC------CCeEE
Confidence            4579999999888876655 458999997765533211110    012356888988887766665543      45888


Q ss_pred             EECCCCceeEEEe--------cCCceeEEEEecCceEEE-e-cCeEEEEEcCCceeeeEeec--------cCCCceeEEE
Q 015650          161 WDDHQSRCIGELS--------FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET--------IANPKGLCAV  222 (403)
Q Consensus       161 wd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~  222 (403)
                      |+..++.. ..+.        ....|.++...+++.+.+ + ++-|..||..+++.......        ....+..++.
T Consensus       335 ~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  413 (795)
T 4a2l_A          335 YHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV  413 (795)
T ss_dssp             ECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred             eCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence            88665542 2222        234688999888877655 5 45899999876654322111        1234455555


Q ss_pred             eeCCCeEEEEeeCCccCeEEEEEccCCceeEEee-----cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-----~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      ..++..+++++   .++-|.+||..++....+..     ....|.++...++|++.+ |+.+ . |.+||..+++.....
T Consensus       414 d~~g~~lWigt---~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-G-l~~~~~~~~~~~~~~  487 (795)
T 4a2l_A          414 DEKKSLVYIGT---HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-A-LVRFNPEQRSFTTIE  487 (795)
T ss_dssp             ETTTTEEEEEE---TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-C-EEEEETTTTEEEECC
T ss_pred             cCCCCEEEEEe---CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-c-eeEEeCCCCeEEEcc
Confidence            44443256654   45678999988877666542     345789999998888655 4454 4 899998776553322


Q ss_pred             ec----CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          298 RR----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       298 ~~----~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ..    ......|.++...++|.+.+...  +-|..||..+++
T Consensus       488 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~  528 (795)
T 4a2l_A          488 KEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD  528 (795)
T ss_dssp             BCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred             ccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence            11    11235799999999998776554  458889987765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=7.1e-07  Score=86.31  Aligned_cols=236  Identities=9%  Similarity=0.037  Sum_probs=141.3

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCc-ceeEE-EEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe
Q 015650           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGG-GIGVV-EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (403)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~-~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~  173 (403)
                      +..|++++ ++.|..+|..+++.+......... ...+. ..... ++..++.......-..+.|..+|..+|+.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            34555555 666999999999888766552100 01111 01112 3444444322000011899999999999988876


Q ss_pred             c-C-Cc------------------------------eeEEEEecCceEEE---ecC-------------------eEEEE
Q 015650          174 F-R-SE------------------------------VRSVKLRRDRIIVV---LEQ-------------------KIFVY  199 (403)
Q Consensus       174 ~-~-~~------------------------------i~~~~~~~~~~~~~---~d~-------------------~i~i~  199 (403)
                      . . .+                              ...+++.++...++   .++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            2 1 10                              12367777544443   233                   49999


Q ss_pred             EcCCceeeeEeeccCC---------CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE-EeecC-----------
Q 015650          200 NFADLKLLHQIETIAN---------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD-----------  258 (403)
Q Consensus       200 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~-~~~~~-----------  258 (403)
                      |.++|+.+..++....         +.....+..+++..-++..++.+|.++++|..++++.. .....           
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999999888765321         11222333455432222235689999999998876541 11000           


Q ss_pred             -Cc------------------------eEEEEEcCCCCEEEEEe------------------------------------
Q 015650          259 -SR------------------------IACFALTQDGQLLATSS------------------------------------  277 (403)
Q Consensus       259 -~~------------------------i~~~~~sp~g~~l~s~~------------------------------------  277 (403)
                       .+                        -..++++|+..+++...                                    
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence             00                        01267888777665421                                    


Q ss_pred             CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .+|. |..||+.+++.+-....+   .......+...+.++++++.||.|+.||.++++.
T Consensus       436 ~~g~-l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          436 VSGA-LLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             CEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccce-EEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence            2377 999999999988777642   2333334445678888999999999999999985

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.83  E-value=2.8e-05  Score=67.86  Aligned_cols=230  Identities=10%  Similarity=-0.058  Sum_probs=141.0

Q ss_pred             CEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCC----CceeEEE
Q 015650           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGEL  172 (403)
Q Consensus        98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~----~~~~~~~  172 (403)
                      .+|+.+..+.|+..++++.+..  ..+.  .......+.|++. +..+++....     +.|..+++..    ......+
T Consensus         2 ~~ll~~~~~~I~~i~~~~~~~~--~~~~--~~~~p~g~~~d~~~~~ly~~D~~~-----~~I~~~~~~g~~~~~~~~~~~   72 (316)
T 1ijq_A            2 AYLFFTNRHEVRKMTLDRSEYT--SLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVI   72 (316)
T ss_dssp             CEEEEECBSSEEEEETTSCCCE--EEEC--SCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEE
T ss_pred             CEEEEECCCeEEEEECCCcceE--ehhc--CCCceEEEEEEeCCCEEEEEECCC-----CcEEEEECCCCCCCcccEEEE
Confidence            3566777777999998876543  2232  3345678888863 4455554444     8999999875    2222223


Q ss_pred             e-cCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          173 S-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       173 ~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      . .-.....+++.+ ++.+.+   ..+.|.++++........+.........+++.|.+..+|++-.+ ..+.|..++++
T Consensus        73 ~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~d  151 (316)
T 1ijq_A           73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN  151 (316)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETT
T ss_pred             eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCC
Confidence            2 224567899986 444444   35789999986543322333233445778899888777766433 23788888887


Q ss_pred             CCceeEEe-ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeCC
Q 015650          248 SKRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSDK  324 (403)
Q Consensus       248 ~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~s~d~~~l~s~~~d  324 (403)
                      ......+. ..-.....|++++++..|+.+.. .+. |..+|+.... .+.+.. .........|++. .+.++++-...
T Consensus       152 G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~  228 (316)
T 1ijq_A          152 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  228 (316)
T ss_dssp             SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred             CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCC
Confidence            76554443 23456789999998777766554 456 9999986433 333321 1112345778874 35555565677


Q ss_pred             CcEEEEEeecCCCCCC
Q 015650          325 GTVHVFNLKVNSGSAR  340 (403)
Q Consensus       325 g~v~iwd~~~~~~~~~  340 (403)
                      +.|..++..+++....
T Consensus       229 ~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          229 EAIFSANRLTGSDVNL  244 (316)
T ss_dssp             TEEEEEETTTCCCCEE
T ss_pred             CeEEEEeCCCCcceEE
Confidence            8898888777765433

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.83  E-value=1.2e-05  Score=69.90  Aligned_cols=223  Identities=9%  Similarity=-0.023  Sum_probs=132.1

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEec---C--eEEEEEcCCc
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE---Q--KIFVYNFADL  204 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d---~--~i~i~d~~~~  204 (403)
                      .....+++++++.++++....     +.|..||... +....+.....+..+++.+++.+++.+   +  .|..+|..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~-----~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEV-----GEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTT-----TEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCC-----CeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            455678888887766665555     8899998654 444444555678899999999877643   2  4777787777


Q ss_pred             eeeeEeeccC-CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE--ee---------cCCceEEEEEcCCCCE
Q 015650          205 KLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--MA---------HDSRIACFALTQDGQL  272 (403)
Q Consensus       205 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~--~~---------~~~~i~~~~~sp~g~~  272 (403)
                      +......... .....++..+ +..++++-  ..++.|.++|...+.....  ..         .-.....+  ++++++
T Consensus       106 ~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d--~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          106 TVETLLTLPDAIFLNGITPLS-DTQYLTAD--SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             CEEEEEECTTCSCEEEEEESS-SSEEEEEE--TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             eEEEEEeCCCccccCcccccC-CCcEEEEE--CCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            6543322111 1112333322 33333332  2467888888765422211  10         11234455  788887


Q ss_pred             EEEEeC-CCcEEEEEEcCC-CcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCC
Q 015650          273 LATSST-KGTLVRIFNTLD-GTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSD  348 (403)
Q Consensus       273 l~s~~~-dg~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  348 (403)
                      |+.+.. .+. |.+|++.. ++.  ...+..   ......|+++++|+++++....+.|.+++.+ ++...         
T Consensus       181 lyv~d~~~~~-I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~---------  246 (306)
T 2p4o_A          181 LYVSNTEKML-LLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI---------  246 (306)
T ss_dssp             EEEEETTTTE-EEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE---------
T ss_pred             EEEEeCCCCE-EEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE---------
Confidence            766554 556 99999864 321  122221   1235678999999887776677889998754 33100         


Q ss_pred             CCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEec---cCCCEEEEEccC
Q 015650          349 PTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG---HQKNTVVILGMD  401 (403)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs---~d~~~l~~~~~d  401 (403)
                                              +..+...-..+++++|.   ||+++|++++..
T Consensus       247 ------------------------~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          247 ------------------------IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ------------------------EECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ------------------------EeecccccCCceEEEEecccCCCCEEEEECCC
Confidence                                    00011112457889998   899988887654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.81  E-value=2.2e-05  Score=70.56  Aligned_cols=238  Identities=7%  Similarity=-0.046  Sum_probs=146.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ  165 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~  165 (403)
                      .-.|.+..+ ..+|+.+..+.|+.++++.....  ..+.  .......++|.+ ++.++++....     +.|..+++..
T Consensus        78 ~~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~--~~~~--~~~~~~gl~~d~~~~~ly~~D~~~-----~~I~r~~~~g  147 (386)
T 3v65_B           78 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT--LLLN--NLENAIALDFHHRRELVFWSDVTL-----DRILRANLNG  147 (386)
T ss_dssp             SSCEEECSS-CCEEEEECBSCEEEECTTSCCCE--EEEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTS
T ss_pred             CCeECCccc-cceeEeecCccceeeccCCCcEE--EEec--CCCccEEEEEecCCCeEEEEeCCC-----CcEEEEecCC
Confidence            344555555 45666666677888888765433  2222  334577888885 44455554444     7899999876


Q ss_pred             CceeEEEe-cCCceeEEEEecC-ceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650          166 SRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       166 ~~~~~~~~-~~~~i~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      +.....+. .......+++.+. +.+.+.   .+.|.++++........+.........+++.|.+..+|++-.+ ..+.
T Consensus       148 ~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~-~~~~  226 (386)
T 3v65_B          148 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPR  226 (386)
T ss_dssp             CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS-SSCE
T ss_pred             CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC-CCCE
Confidence            65444333 3345677888874 444443   5688888876443322333233445778999888877776533 2378


Q ss_pred             EEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 015650          241 VRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (403)
Q Consensus       241 i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l  318 (403)
                      |..++++......+. ..-.....|+|+|++..|+.+.. .+. |..+|+........+..  .......|++ ..+.++
T Consensus       227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~--~~~~P~giav-~~~~ly  302 (386)
T 3v65_B          227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSLY  302 (386)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSCSCEEEECS--SCSSEEEEEE-ETTEEE
T ss_pred             EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCCeeEEEEEC--CCCCceEEEE-ECCEEE
Confidence            999998876555443 33445789999987777766554 455 99999764433323332  2345677888 344555


Q ss_pred             EEEeCCCcEEEEEeecCCCCC
Q 015650          319 AVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       319 ~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      ++-...+.|..++..+++...
T Consensus       303 ~td~~~~~V~~~~~~~G~~~~  323 (386)
T 3v65_B          303 WTDWHTKSINSANKFTGKNQE  323 (386)
T ss_dssp             EEETTTTEEEEEETTTCCSCE
T ss_pred             EeeCCCCeEEEEECCCCcceE
Confidence            566677888888866666443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.80  E-value=2.8e-05  Score=68.84  Aligned_cols=239  Identities=7%  Similarity=-0.047  Sum_probs=146.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECC
Q 015650           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      +..+|.+..+ ..+|+.+..+.|+..+++.....  ..+.  .......++|++ ++.++.+....     +.|..+++.
T Consensus        34 d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~--~~~~--~~~~~~~l~~d~~~~~ly~~D~~~-----~~I~r~~~~  103 (349)
T 3v64_C           34 DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT--LLLN--NLENAIALDFHHRRELVFWSDVTL-----DRILRANLN  103 (349)
T ss_dssp             TSSCEEESSS-CCEEEEECBSCEEEECTTSCCEE--EEEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETT
T ss_pred             CCCccccccc-CceeEeecccceEEEeCCCCeeE--Eeec--CCCceEEEEEeccccEEEEEeccC-----CceEEEecC
Confidence            3455666666 45666666666888887654433  2232  334577888875 44444444444     789999987


Q ss_pred             CCceeEEEe-cCCceeEEEEecC-ceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC
Q 015650          165 QSRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (403)
Q Consensus       165 ~~~~~~~~~-~~~~i~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (403)
                      .+.....+. .......+++.+. +.+.+.   .+.|.+.++........+.........+++.|.+..+|++-.+ ..+
T Consensus       104 g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~-~~~  182 (349)
T 3v64_C          104 GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTP  182 (349)
T ss_dssp             SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS-SSC
T ss_pred             CCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC-CCC
Confidence            665444333 3345678999874 444443   5689999986543322232333445678999888777766533 237


Q ss_pred             eEEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 015650          240 QVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW  317 (403)
Q Consensus       240 ~i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~  317 (403)
                      .|..++++......+. ..-.....|+++|++..|+.+.. .+. |..+|+........+..  .......|++ ..+.+
T Consensus       183 ~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~~~~~~~~~--~~~~P~giav-~~~~l  258 (349)
T 3v64_C          183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSL  258 (349)
T ss_dssp             EEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECS--SCSSEEEEEE-ETTEE
T ss_pred             EEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCCceEEEEeC--CCCCceEEEE-ECCEE
Confidence            8999998876554443 23345789999987777766554 455 99999764333322322  2245677888 34455


Q ss_pred             EEEEeCCCcEEEEEeecCCCCC
Q 015650          318 LAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       318 l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      +++-...+.|..++..+++...
T Consensus       259 y~td~~~~~V~~~~~~~G~~~~  280 (349)
T 3v64_C          259 YWTDWHTKSINSANKFTGKNQE  280 (349)
T ss_dssp             EEEETTTTEEEEEETTTCCSCE
T ss_pred             EEecCCCCeEEEEEccCCCccE
Confidence            5555567788877765665443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.78  E-value=4e-05  Score=69.16  Aligned_cols=231  Identities=9%  Similarity=-0.073  Sum_probs=143.1

Q ss_pred             CEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCC----ceeEEE
Q 015650           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGEL  172 (403)
Q Consensus        98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~----~~~~~~  172 (403)
                      .+|+.+..+.|+..+++......  .+.  ....+..++|++ ++.++.+....     +.|+.+++...    .....+
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~--~~~--~~~~~~~l~~d~~~~~lywsD~~~-----~~I~~~~~~g~~~~~~~~~~~  154 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTS--LIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVI  154 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEE--EEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC------CCCEEEE
T ss_pred             ceeEEeccceeEEEccCCcceeE--ecc--ccCcceEEeeeeccCceEEEecCC-----CeEEEEEcccCCCCCcceEEE
Confidence            46666667778888887654432  232  445677888886 34444444444     78988887652    222233


Q ss_pred             e-cCCceeEEEEec-CceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          173 S-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       173 ~-~~~~i~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      . .......+++.+ .+.+.+.   .+.|.+.++........+.........+++.|.+..+|++-.+ ..+.|...+++
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~d  233 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN  233 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETT
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCC
Confidence            3 345677889987 4444443   5689999987544333333333445788999987777766433 34789999988


Q ss_pred             CCceeEEe-ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          248 SKRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       248 ~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      ......+. ..-.....|++++++..|+.+.. .+. |..+|+........+..........+|++. .+.++++-...+
T Consensus       234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            76555543 33356789999998877776654 455 999998644333333321122345677773 334555666778


Q ss_pred             cEEEEEeecCCCCCC
Q 015650          326 TVHVFNLKVNSGSAR  340 (403)
Q Consensus       326 ~v~iwd~~~~~~~~~  340 (403)
                      .|..+|..+++....
T Consensus       312 ~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          312 AIFSANRLTGSDVNL  326 (400)
T ss_dssp             SEEEEESSSCCCCEE
T ss_pred             eEEEEEcCCCCceEE
Confidence            898888777765443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.77  E-value=6.6e-06  Score=79.59  Aligned_cols=191  Identities=14%  Similarity=0.176  Sum_probs=115.2

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce-------e-EEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-------G-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      ++.+++...++.|..+|..+++.+...........       . ...+.+..+. .++. ..+     +.|..+|..+|+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~-~~d-----g~l~alD~~tG~  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDK-VYVG-TLD-----GRLIALDAKTGK  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTE-EEEE-CTT-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCE-EEEE-cCC-----CEEEEEECCCCC
Confidence            44445544456688899888888876554311100       0 0112223333 3333 344     899999999999


Q ss_pred             eeEEEecC-----CceeE-EEEecCceEEE-e-------cCeEEEEEcCCceeeeEeeccC-CC----------------
Q 015650          168 CIGELSFR-----SEVRS-VKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIA-NP----------------  216 (403)
Q Consensus       168 ~~~~~~~~-----~~i~~-~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~-~~----------------  216 (403)
                      .+..+...     ..+.. ..+ .++.+++ .       ++.|+.+|.++|+.+..+.... .+                
T Consensus       139 ~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          139 AIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             EeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence            98887631     11211 111 2555555 2       4789999999999988875321 00                


Q ss_pred             --------------ceeEEEeeCCCeEEEEeeCCccC-------------------eEEEEEccCCceeEEe-e--cC--
Q 015650          217 --------------KGLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEHYASKRTKFIM-A--HD--  258 (403)
Q Consensus       217 --------------~~~~~~~~~~~~~~~~~~g~~d~-------------------~i~v~d~~~~~~~~~~-~--~~--  258 (403)
                                    ...+++.+..+.+++.+   .++                   .|..+|.++++..-.. .  |.  
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w  294 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGT---GNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW  294 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEEeC---CCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc
Confidence                          11357777766655553   222                   4889999887764322 1  22  


Q ss_pred             -----CceEEEEEcCCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          259 -----SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       259 -----~~i~~~~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                           .+.....+..+|+   .++.++.+|. ++++|..+|+.+..+.
T Consensus       295 d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          295 DFTATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK  341 (668)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             cccCCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEecccc
Confidence                 2222223334675   6888999999 9999999999885544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.76  E-value=6.6e-06  Score=78.02  Aligned_cols=227  Identities=7%  Similarity=0.012  Sum_probs=134.4

Q ss_pred             EEEEc-CCcEEEEEcCCCeeEEEEecccCcce--eEE-EEeeeCCeEEEeeCC-----CCCCCCCceEEEEECCCCceeE
Q 015650          100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGGI--GVV-EMLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSRCIG  170 (403)
Q Consensus       100 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~--~v~-~~~~~~~~~~~~s~~-----~d~~~~~~~i~iwd~~~~~~~~  170 (403)
                      |++++ ++.|..+|..+++.+....+. .+..  .+. ..... ++..++..+     .+     +.|+-+|.++|+.+.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~-----g~v~A~D~~TG~~~W  196 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENS-DIKVGSTLTIAPYVV-KDKVIIGSSGAELGVR-----GYLTAYDVKTGEQVW  196 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEECCBCGGGTCC-----CEEEEEETTTCCEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCC-CCCccceeecCCEEE-CCEEEEEecccccCCC-----CeEEEEECCCCcEEE
Confidence            55555 555889999999888766553 2110  111 11112 344454442     24     899999999999988


Q ss_pred             EEecCCce---------------------------------------eEEEEecCce-EEE-e-c---------------
Q 015650          171 ELSFRSEV---------------------------------------RSVKLRRDRI-IVV-L-E---------------  193 (403)
Q Consensus       171 ~~~~~~~i---------------------------------------~~~~~~~~~~-~~~-~-d---------------  193 (403)
                      .+......                                       ..+++.++.. +++ . +               
T Consensus       197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y  276 (599)
T 1w6s_A          197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW  276 (599)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccc
Confidence            87732211                                       1234555433 333 2 2               


Q ss_pred             -CeEEEEEcCCceeeeEeeccCCCc-------eeEEEe---eCCCeEEEEeeCCccCeEEEEEccCCceeEEeec-----
Q 015650          194 -QKIFVYNFADLKLLHQIETIANPK-------GLCAVS---QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-----  257 (403)
Q Consensus       194 -~~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~-----  257 (403)
                       +.|..+|.++|+.+..++......       ..+.+.   .+++..-++..+..+|.++++|.+++++..-...     
T Consensus       277 ~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  356 (599)
T 1w6s_A          277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN  356 (599)
T ss_dssp             SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             cceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence             379999999999988876543211       112222   3453222222245889999999988665322110     


Q ss_pred             ---------CCce--------------------------EEEEEcCCCCEEEEEe-------------------------
Q 015650          258 ---------DSRI--------------------------ACFALTQDGQLLATSS-------------------------  277 (403)
Q Consensus       258 ---------~~~i--------------------------~~~~~sp~g~~l~s~~-------------------------  277 (403)
                               ..++                          ..++++|+..++++..                         
T Consensus       357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (599)
T 1w6s_A          357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (599)
T ss_dssp             SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence                     0011                          2456777766665431                         


Q ss_pred             --------------CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          278 --------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       278 --------------~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                                    ..|. |.-||+.+++.+-.....   .++..-.....+.+++.++.||.|+.||.++++.
T Consensus       437 ~~~~~p~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          437 NMYPGPKGDRQNYEGLGQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             EEEECTTSBTTTTBCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eeccCCcCCcccCCCcCe-EEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence                          2466 889999999987776532   1221111222567777899999999999999984

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.72  E-value=1.1e-05  Score=76.31  Aligned_cols=194  Identities=10%  Similarity=0.129  Sum_probs=113.7

Q ss_pred             CCCEEEEEc-CCcEEEEEc-CCCeeEEEEecccCcce--------eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650           96 DHGCFAAGT-DHGFRIYNC-DPFREIFRRDFERGGGI--------GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (403)
Q Consensus        96 d~~~l~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~  165 (403)
                      ++.+++... ++.|..+|. .+++.+....+......        ....+....+ ..++. ..+     +.|..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~-~~d-----g~l~alD~~t  134 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAG-QIVKK-QAN-----GHLLALDAKT  134 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETT-EEEEE-CTT-----SEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECC-EEEEE-eCC-----CEEEEEECCC
Confidence            444445444 455888898 78888766655411100        0011223333 33333 334     8999999999


Q ss_pred             CceeEEEecCC-----ceeE-EEEecCceEEE-e-------cCeEEEEEcCCceeeeEeeccCCC---------------
Q 015650          166 SRCIGELSFRS-----EVRS-VKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP---------------  216 (403)
Q Consensus       166 ~~~~~~~~~~~-----~i~~-~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~---------------  216 (403)
                      |+.+..+....     .+.+ .... ++.+++ .       ++.|+.+|.++|+.+..+......               
T Consensus       135 G~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~  213 (571)
T 2ad6_A          135 GKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH  213 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence            99988776222     2221 1222 455555 2       589999999999998877542211               


Q ss_pred             -----------------------ceeEEEeeCCCeEEEEeeCC----------cc----CeEEEEEccCCceeEEe---e
Q 015650          217 -----------------------KGLCAVSQGVGSLVLVCPGL----------QK----GQVRVEHYASKRTKFIM---A  256 (403)
Q Consensus       217 -----------------------~~~~~~~~~~~~~~~~~~g~----------~d----~~i~v~d~~~~~~~~~~---~  256 (403)
                                             ...+++.+....+++.+ +.          .+    +.|..+|.++++..-..   .
T Consensus       214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~-g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~  292 (571)
T 2ad6_A          214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS-GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP  292 (571)
T ss_dssp             GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEEC-CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence                                   01245566555555543 21          11    36889999887754322   1


Q ss_pred             cCC-------ceEEEEEcCCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          257 HDS-------RIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       257 ~~~-------~i~~~~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      |..       ...-+....+|+   .++.++.+|. ++++|..+|+.+..+..
T Consensus       293 ~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             CcccccccCCCCEEEecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence            211       111122224774   5778888999 99999999999877653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=4.7e-05  Score=75.27  Aligned_cols=237  Identities=13%  Similarity=0.027  Sum_probs=145.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEe------cccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD------FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ....|.++...++|.+-+...+++|..|+...........      ...-....|.++....++.+.++...      +-
T Consensus       311 ~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~------~G  384 (781)
T 3v9f_A          311 SNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG------GG  384 (781)
T ss_dssp             SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS------SC
T ss_pred             CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC------Cc
Confidence            3467999999998887766558889999876543221111      01012346888888876655554422      45


Q ss_pred             EEEEECCCCceeEEE---e-cCCceeEEEEecCceEEE-e-cCeEEEEEcCCceeeeEeec---cCCCceeEEEeeCCCe
Q 015650          158 VMIWDDHQSRCIGEL---S-FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGS  228 (403)
Q Consensus       158 i~iwd~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  228 (403)
                      |..|+..+++.....   . ....|.++...+++.+.+ + ++.|..+|..+++.. .+..   ....+..+....++ .
T Consensus       385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g-~  462 (781)
T 3v9f_A          385 INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNK-K  462 (781)
T ss_dssp             EEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTS-E
T ss_pred             EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCC-C
Confidence            888887654332211   1 345788898887777666 4 478999998776543 2221   12334444443332 3


Q ss_pred             EEEEeeCCccCeEEEEEccCCceeEEeec------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec--C
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--G  300 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--~  300 (403)
                      +++++   . +-|.+||..++....+...      ...|.++...++|++.+ |+..+. |..||..+++. ..+..  .
T Consensus       463 lwigt---~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~G-l~~~~~~~~~~-~~~~~~~~  535 (781)
T 3v9f_A          463 IWIGT---H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGG-VGIYTPDMQLV-RKFNQYEG  535 (781)
T ss_dssp             EEEEE---T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSC-EEEECTTCCEE-EEECTTTT
T ss_pred             EEEEE---C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCC-EEEEeCCCCeE-EEccCCCC
Confidence            44443   3 5688899887665554321      35789999999998554 555445 88899766554 33432  1


Q ss_pred             CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       301 ~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .....|.++...++|.+.++. .+|.|..||..+++
T Consensus       536 l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          536 FCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD  570 (781)
T ss_dssp             CSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred             CCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence            123578999999999876654 46654778776554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.67  E-value=1.4e-05  Score=75.83  Aligned_cols=140  Identities=11%  Similarity=0.118  Sum_probs=85.9

Q ss_pred             CeEEEEEcCCceeeeEeeccCCC-------ceeEEEe---eCCCeEEEEeeCCccCeEEEEEccCCceeEE-eecC----
Q 015650          194 QKIFVYNFADLKLLHQIETIANP-------KGLCAVS---QGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MAHD----  258 (403)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~-~~~~----  258 (403)
                      +.|..+|.++|+.+..++.....       ...+.+.   .+++..-++..++.+|.++++|.+++++..- ....    
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            57999999999998887542211       1122222   3454222222346899999999888664321 1110    


Q ss_pred             ---------Cc--------------------------------eEEEEEcCCCCEEEEEe--------------------
Q 015650          259 ---------SR--------------------------------IACFALTQDGQLLATSS--------------------  277 (403)
Q Consensus       259 ---------~~--------------------------------i~~~~~sp~g~~l~s~~--------------------  277 (403)
                               .+                                -..++++|+..++++..                    
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                     00                                01356677655555432                    


Q ss_pred             -------------CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          278 -------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       278 -------------~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                                   .+|. |.-||+.+++.+-+...+   ..+..-.....+.+++.++.||.|+.||.++++.
T Consensus       451 ~g~~~~~~p~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             CCEEEEEEESCSSCSEE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eccceeecCCCCCCcce-EEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence                         2567 999999999988776642   1222111122466788899999999999999984

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.67  E-value=5.3e-05  Score=66.02  Aligned_cols=230  Identities=10%  Similarity=-0.019  Sum_probs=139.6

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCceeE-EEe-cC
Q 015650           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIG-ELS-FR  175 (403)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~-~~~-~~  175 (403)
                      +|+.+..+.|+.++++.........+.  .......+.|.+. +.++.+....     +.|..+++..+.... .+. .-
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~-----~~I~r~~~~g~~~~~~~~~~~l   78 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGL   78 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEETTT-----TEEEEEETTSSSCCCEEEEECC
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEECCC-----CcEEEEEccCCCceEEEEcCCC
Confidence            566666667999998765311112222  2345678888763 3444444444     789999987664322 222 33


Q ss_pred             CceeEEEEec-CceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650          176 SEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (403)
Q Consensus       176 ~~i~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~  251 (403)
                      .....+++.+ .+.+.+.   .+.|.++++........+.........+++.|.+..+|++-.+ ..+.|...+++....
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSR  157 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCe
Confidence            4567889986 4444443   5689999986433222222333444678899877777665433 457888888887554


Q ss_pred             eEEe-ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650          252 KFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (403)
Q Consensus       252 ~~~~-~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~i  329 (403)
                      ..+. ..-.....|++++++..|+.+.. .+. |..+|+..... +.+... .......+++.. +.++.+-...+.|..
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG~~~-~~~~~~-~~~~P~glav~~-~~lywtd~~~~~V~~  233 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNR-QAVVKG-SLPHPFALTLFE-DILYWTDWSTHSILA  233 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEECS-CCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCCCce-EEEecC-CCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence            4443 23345689999997777766654 455 99999864333 333321 224566777753 344555557788999


Q ss_pred             EEeecCCCCCC
Q 015650          330 FNLKVNSGSAR  340 (403)
Q Consensus       330 wd~~~~~~~~~  340 (403)
                      ++..+++....
T Consensus       234 ~~~~~G~~~~~  244 (318)
T 3sov_A          234 CNKYTGEGLRE  244 (318)
T ss_dssp             EETTTCCSCEE
T ss_pred             EECCCCCceEE
Confidence            99877775433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.61  E-value=0.00022  Score=62.10  Aligned_cols=174  Identities=9%  Similarity=-0.022  Sum_probs=115.3

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCc-eEEEe---cCeEEEEEcCC---ceeee-EeeccCCCceeEEEeeCCC
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVL---EQKIFVYNFAD---LKLLH-QIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~---d~~i~i~d~~~---~~~~~-~~~~~~~~~~~~~~~~~~~  227 (403)
                      ..|+..|+...+....+.....+..++|.+++ .+.+.   ++.|+.+++..   +.... .+.........+++.+.++
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            57899998887766655555678899999854 44443   57899999875   12222 2322223446788888777


Q ss_pred             eEEEEeeCCccCeEEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeCC--CcEEEEEEcCCCcEEEEEecCCCcc
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTK--GTLVRIFNTLDGTLLQEVRRGADRA  304 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~d--g~~i~iwd~~~~~~~~~~~~~~~~~  304 (403)
                      .+|++-  ...+.|.++++.......+. ........++++|.+.+|+.+...  +. |..+++. |.....+... .-.
T Consensus        90 ~ly~~d--~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~d-G~~~~~~~~~-~~~  164 (316)
T 1ijq_A           90 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NIQ  164 (316)
T ss_dssp             EEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SCS
T ss_pred             eEEEEE--CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcCC-CCCeEEEEEC-CCC
Confidence            777764  35688999999876555443 234567899999976666555443  56 8888874 4444444321 235


Q ss_pred             cEEEEEeCCCCCEEEEEe-CCCcEEEEEeec
Q 015650          305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~  334 (403)
                      ....|++++++..|..+. ..+.|..+|++.
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            678999999887776554 567899999874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=0.00012  Score=72.45  Aligned_cols=235  Identities=11%  Similarity=0.034  Sum_probs=142.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecc----cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      ...|.+|...++|.+.+... +++.+|+..+.+........    .-....|.++....++.+.++...      +-|.+
T Consensus       210 ~~~i~~i~~d~~g~lwigt~-~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~------~Gl~~  282 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWIGTS-KGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL------NGIMI  282 (781)
T ss_dssp             CSSEEEEEECTTCCEEEEET-TEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS------SCEEE
T ss_pred             CCceeEEEEcCCCCEEEEeC-CcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC------CCeEE
Confidence            35689998888888776554 48999997655432111100    012356888888777776665543      34788


Q ss_pred             EECCCCceeEEEe---------------cCCceeEEEEecCceEEE-e-cCeEEEEEcCCceeeeEeec----------c
Q 015650          161 WDDHQSRCIGELS---------------FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET----------I  213 (403)
Q Consensus       161 wd~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~----------~  213 (403)
                      ++..+++......               ....|.++...++|.+-+ + ++-|..|+..+.... .+..          .
T Consensus       283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~  361 (781)
T 3v9f_A          283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLS  361 (781)
T ss_dssp             EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCS
T ss_pred             ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCC
Confidence            8877654322110               235688998888877655 5 778999997654322 2211          1


Q ss_pred             CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE----eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~----~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~  289 (403)
                      ...+..+....++ .+++++   .++-|..||..++....+    ......|.++...++|.+. .|+.++. |..+|..
T Consensus       362 ~~~v~~i~~d~~g-~lWigt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~G-l~~~~~~  435 (781)
T 3v9f_A          362 NKVVSSVCDDGQG-KLWIGT---DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGN-ISYYNTR  435 (781)
T ss_dssp             SSCEEEEEECTTS-CEEEEE---BSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEE-EEEECSS
T ss_pred             CcceEEEEEcCCC-CEEEEe---CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCC-EEEEcCC
Confidence            2234444444333 445543   456688888776544322    1234578999988888755 4676667 9999987


Q ss_pred             CCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          290 DGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       290 ~~~~~~~~~~-~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +++.. .+.. ......|.++...++|.+++. +. +-|..||..+++
T Consensus       436 ~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          436 LKKFQ-IIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKK  480 (781)
T ss_dssp             SCEEE-ECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSS
T ss_pred             CCcEE-EeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCe
Confidence            76543 3321 113357999999888876554 44 458888887655

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.59  E-value=0.00012  Score=61.11  Aligned_cols=197  Identities=7%  Similarity=0.038  Sum_probs=122.1

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      .+.+-...+..++|+|++..|.+.. +.+ |...|.. ++......+.  .....-.+++.+++.++++...+     +.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~--g~~D~EGIa~~~~g~~~vs~E~~-----~~   92 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD--FVKDLETIEYIGDNQFVISDERD-----YA   92 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS--SCSSEEEEEECSTTEEEEEETTT-----TE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC--CCCChHHeEEeCCCEEEEEECCC-----Cc
Confidence            3445556799999999877665544 433 6667765 4433222232  33556777777888887776666     78


Q ss_pred             EEEEECCCCce---eEEEe-------cCCceeEEEEecCce-EEE-ec-C--eEEEEEc-CCceeeeEeec-------cC
Q 015650          158 VMIWDDHQSRC---IGELS-------FRSEVRSVKLRRDRI-IVV-LE-Q--KIFVYNF-ADLKLLHQIET-------IA  214 (403)
Q Consensus       158 i~iwd~~~~~~---~~~~~-------~~~~i~~~~~~~~~~-~~~-~d-~--~i~i~d~-~~~~~~~~~~~-------~~  214 (403)
                      +.++++.....   +....       .......++|.|++. +++ .+ .  .|+.|+- .....+..+..       ..
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL  172 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence            99998765542   22222       223458999999863 333 22 2  4555551 01111222211       22


Q ss_pred             CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC---------CceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTLVRI  285 (403)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~---------~~i~~~~~sp~g~~l~s~~~dg~~i~i  285 (403)
                      .....+++.|..+++++++  .....+.++|...+.+..+.-..         .....|+|.++|++.+ .++.+. +++
T Consensus       173 ~d~S~l~~dp~tg~lliLS--~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~-~y~  248 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLS--HESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNR-FYR  248 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEE--TTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTE-EEE
T ss_pred             CCceeEEEcCCCCeEEEEE--CCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCce-EEE
Confidence            3467899999988888876  46788999998876554443221         2568999999998544 466666 777


Q ss_pred             EEc
Q 015650          286 FNT  288 (403)
Q Consensus       286 wd~  288 (403)
                      |.-
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.59  E-value=4.7e-05  Score=66.60  Aligned_cols=180  Identities=8%  Similarity=0.046  Sum_probs=109.2

Q ss_pred             EEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec---------------------CCceeEEEEec-CceE
Q 015650          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF---------------------RSEVRSVKLRR-DRII  189 (403)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~---------------------~~~i~~~~~~~-~~~~  189 (403)
                      ...+++.+++..+.++..+     +.|..|+..+++.. .+..                     ...+..+++.+ ++.+
T Consensus        21 p~~i~~d~~g~~l~v~~~~-----~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l   94 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQD-----GRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL   94 (322)
T ss_dssp             CCCEECCTTCSSEEEECTT-----SEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred             ceEEEEcCCCCEEEEEcCC-----CeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence            3456677776534444444     78999987665432 2221                     13578899997 7776


Q ss_pred             EEe--cCeEEEEEcCCceeeeEeecc-----CCCceeEEEee-CCCeEEEEeeC---------------CccCeEEEEEc
Q 015650          190 VVL--EQKIFVYNFADLKLLHQIETI-----ANPKGLCAVSQ-GVGSLVLVCPG---------------LQKGQVRVEHY  246 (403)
Q Consensus       190 ~~~--d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~g---------------~~d~~i~v~d~  246 (403)
                      ++.  .+.|..+|..+++. ..+...     ......+++.+ ++ .++++..+               ..++.|..||.
T Consensus        95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            664  45688898765542 222111     12335577777 65 45555422               12367888888


Q ss_pred             cCCceeEEeecCCceEEEEEcCCCCEEEEE-eCCCcEEEEEEcCCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 015650          247 ASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (403)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~-~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~  323 (403)
                      .++....+.........++++|+|++|+.+ ...+. |++|++....  ....+..  ..+ ...|++.++|.++++...
T Consensus       173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCe-EEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecC
Confidence            776655443333445789999999976655 45567 9999987421  1222221  123 788999999987766544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.58  E-value=0.00015  Score=71.05  Aligned_cols=230  Identities=9%  Similarity=-0.068  Sum_probs=138.6

Q ss_pred             CEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCC----ceeEEE
Q 015650           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGEL  172 (403)
Q Consensus        98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~----~~~~~~  172 (403)
                      .+|+......|+..+++.....  ..+.  ....+..+++.. ++.++++....     +.|+.+++...    .....+
T Consensus       396 p~Ll~an~~~Ir~i~l~~~~~~--~l~~--~~~~~~gl~~d~~~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi  466 (791)
T 3m0c_C          396 AYLFFTNRHEVRKMTLDRSEYT--SLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVI  466 (791)
T ss_dssp             CEEEEECBSSEEEECTTSCCCE--EEEC--SCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEE
T ss_pred             cccccccccceeEeeccCCcce--eeec--CCCceEEEeecccCCeeEEeeccc-----eeEEEEeccCCCCCcceeEEE
Confidence            4566666666888888655433  2222  344567788876 34444444444     78888887653    222333


Q ss_pred             e-cCCceeEEEEecCc-eEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          173 S-FRSEVRSVKLRRDR-IIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       173 ~-~~~~i~~~~~~~~~-~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      . .......|++.+.+ .++++   .+.|.+.++........+.........+++.|....+|++-.| ..+.|.+.++.
T Consensus       467 ~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~d  545 (791)
T 3m0c_C          467 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN  545 (791)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETT
T ss_pred             ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecC
Confidence            3 34567789998765 33333   5789999987544333333333445789999988887776534 34789999998


Q ss_pred             CCceeEEee-cCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          248 SKRTKFIMA-HDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       248 ~~~~~~~~~-~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      ......+.. .-.....|++++.+..|+.+.. ... |..+++........+.....-....+|++..+ .++++-...+
T Consensus       546 G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~  623 (791)
T 3m0c_C          546 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE  623 (791)
T ss_dssp             SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTT
T ss_pred             CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-EEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCC
Confidence            866655543 3357889999987777766654 445 99999865444333332111234456766332 3344444667


Q ss_pred             cEEEEEeecCCCCC
Q 015650          326 TVHVFNLKVNSGSA  339 (403)
Q Consensus       326 ~v~iwd~~~~~~~~  339 (403)
                      .|...+..+++...
T Consensus       624 ~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          624 AIFSANRLTGSDVN  637 (791)
T ss_dssp             EEEEEETTTCCCCE
T ss_pred             EEEEEeCCCCcceE
Confidence            78777776765543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.58  E-value=0.00011  Score=66.12  Aligned_cols=174  Identities=10%  Similarity=-0.018  Sum_probs=114.4

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecC-ceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      ..|+.+++........+.....+..++|.+. +.++++   .+.|+.+++........+.........+++.+.+..+|+
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence            5688888876665544555566889999974 444443   578999998765443333333334467889888888777


Q ss_pred             EeeCCccCeEEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeC-C-CcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-K-GTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~-d-g~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      +-  ...+.|.+.++.......+. ..-.....++++|.+.+|+.... . +. |..+++........+..  .-...+.
T Consensus       176 ~d--~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~-I~r~~~dG~~~~~~~~~--~~~~PnG  250 (386)
T 3v65_B          176 TD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSGRRIIADT--HLFWPNG  250 (386)
T ss_dssp             EE--TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSCEEEECS--SCSCEEE
T ss_pred             Ec--CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE-EEEEeCCCCCcEEEEEC--CCCCeee
Confidence            65  34578888888775544443 33356789999997776665544 3 56 88888754333322222  2345789


Q ss_pred             EEeCCCCCEEEEEe-CCCcEEEEEeec
Q 015650          309 LAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (403)
Q Consensus       309 l~~s~d~~~l~s~~-~dg~v~iwd~~~  334 (403)
                      |+|+|++..|..+. ..+.|..++++.
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            99998777766554 567788888754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.57  E-value=0.00022  Score=63.05  Aligned_cols=174  Identities=10%  Similarity=-0.004  Sum_probs=113.7

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecC-ceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      ..|+..++........+.....+..++|.+. +.++.+   .+.|+.+++........+.........+++.+.+..+|+
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~  132 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  132 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE
Confidence            5688888766554444444556889999974 444443   578999998765433333332334467889888888777


Q ss_pred             EeeCCccCeEEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEe-CC-CcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-TK-GTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~-~d-g~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      +-  ...+.|.+.+++......+. ..-.....++++|.+..|+... .. +. |..+++.. .....+... .-...+.
T Consensus       133 ~d--~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~-I~r~~~dG-~~~~~~~~~-~~~~PnG  207 (349)
T 3v64_C          133 TD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDG-SGRRIIADT-HLFWPNG  207 (349)
T ss_dssp             EE--TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTS-CSCEESCCS-SCSCEEE
T ss_pred             Ec--CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCE-EEEEeCCC-CCcEEEEEC-CCCCcce
Confidence            65  34678999998876554443 3335678999999666665544 34 56 88888754 333333211 2346789


Q ss_pred             EEeCCCCCEEEEEe-CCCcEEEEEeec
Q 015650          309 LAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (403)
Q Consensus       309 l~~s~d~~~l~s~~-~dg~v~iwd~~~  334 (403)
                      |+++|++..|..+. ..+.|..++++.
T Consensus       208 la~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          208 LTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            99998777766554 567788888764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.56  E-value=0.00035  Score=61.87  Aligned_cols=230  Identities=13%  Similarity=0.166  Sum_probs=153.6

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEee-eCCeEEEeeCCCCCCCCCceEEEEECCC-Cce
Q 015650           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQ-SRC  168 (403)
Q Consensus        91 i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~i~iwd~~~-~~~  168 (403)
                      .-.+|..+.||.-....+.|||+++..++....+.    ..|.-+.| +++.+.+++.        ..|+-|++.. ..+
T Consensus        71 AIMnP~~~iiALrag~~lQiFnle~K~klks~~~~----e~VvfWkWis~~~l~lVT~--------taVyHWsi~~~s~P  138 (494)
T 1bpo_A           71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT----DDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP  138 (494)
T ss_dssp             EEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS----SCCCEEEEEETTEEEEECS--------SEEEEEESSSSCCC
T ss_pred             eeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC----CCceEEEecCCCeEEEEcC--------CeeEEecccCCCCc
Confidence            34678888888777667999999998887555553    46777777 5677778876        6899999874 356


Q ss_pred             eEEEe-c----CCceeEEEEecCceEEE----------ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC--eE-E
Q 015650          169 IGELS-F----RSEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG--SL-V  230 (403)
Q Consensus       169 ~~~~~-~----~~~i~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  230 (403)
                      ++.+. |    ...|..-..+++.++++          ..|.+.+|..+.+ .-+.+++|......+.+.-+..  .+ .
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  217 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFC  217 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEE
T ss_pred             hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEE
Confidence            67776 3    45677778888888877          2578899997653 3455566544332222211111  11 1


Q ss_pred             EEeeCCccCeEEEEEccCC-----ce--eEEe------ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          231 LVCPGLQKGQVRVEHYASK-----RT--KFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~-----~~--~~~~------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      ++.-....+.+++.++...     ..  +...      ...+-..++..++.-..++.-+.-|. |.+||++++.++..-
T Consensus       218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~-i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMN  296 (494)
T ss_dssp             EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce-EEEEecccceeeeee
Confidence            2221222378999888542     01  1111      12344567888888888888999999 999999999999877


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       298 ~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +-  ....|..-+-.....-++.....|.|.--.++..+
T Consensus       297 rI--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          297 RI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EC--CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cc--cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            75  34566665555555566666789988888887765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.55  E-value=4.5e-06  Score=80.74  Aligned_cols=239  Identities=7%  Similarity=-0.072  Sum_probs=125.4

Q ss_pred             EEEEcC-CCCEEEEEcC-C-----------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC-CCCCCCC
Q 015650           90 HISFNQ-DHGCFAAGTD-H-----------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPL  155 (403)
Q Consensus        90 ~i~~s~-d~~~l~~~~~-~-----------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~  155 (403)
                      ++++.+ ++++++.|+. .           .+.+||..+.+-.....+...+.......++..++.+++.++ .+     
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~-----  264 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-----  264 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-----
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC-----
Confidence            456777 8888888752 1           277888876653322222211222222344555555555555 44     


Q ss_pred             ceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEec---------CeEEEEEcCCceeeeEe----eccCCCceeE
Q 015650          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQI----ETIANPKGLC  220 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~----~~~~~~~~~~  220 (403)
                      ..+.+||..+++-...-.  ....-.+++..+++++++..         ..+.+||..+.+-...-    ..........
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~  344 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  344 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence            689999988775433222  22222355666677776632         36899999876432210    0000000000


Q ss_pred             EEeeCCCeEEEEeeCC--------ccCeEEEEEccCCceeEE-eecC---------CceEEEEEcC-CCCEEEEEeCCC-
Q 015650          221 AVSQGVGSLVLVCPGL--------QKGQVRVEHYASKRTKFI-MAHD---------SRIACFALTQ-DGQLLATSSTKG-  280 (403)
Q Consensus       221 ~~~~~~~~~~~~~~g~--------~d~~i~v~d~~~~~~~~~-~~~~---------~~i~~~~~sp-~g~~l~s~~~dg-  280 (403)
                      .+.. ++.+++. .|.        ....+..||..+...... ..+.         ..-.++.|.. ++++++.|+.++ 
T Consensus       345 ~~~~-~~~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          345 LYRS-DNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             GGTT-TCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             eeec-CCceEEE-ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            0111 1222222 121        234677888877542221 1111         1234455543 788888887542 


Q ss_pred             ----------cEEEEEEcCCCcEEEEE-ecCCCcccEEEEEeCCCCCEEEEEeCC-----------CcEEEEEeecCC
Q 015650          281 ----------TLVRIFNTLDGTLLQEV-RRGADRAEIYSLAFSSNAQWLAVSSDK-----------GTVHVFNLKVNS  336 (403)
Q Consensus       281 ----------~~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~s~d~~~l~s~~~d-----------g~v~iwd~~~~~  336 (403)
                                . |.+||..+.+..... ........-.++...|++++++.|+.+           ..+.+||..+.+
T Consensus       423 ~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          423 QDSDATTNAHI-ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SSSBCCCCEEE-EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCCcCCcceE-EEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                      4 888888776654433 011111122345666899999999854           457888876654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.54  E-value=0.00021  Score=67.81  Aligned_cols=195  Identities=9%  Similarity=0.131  Sum_probs=114.6

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCccee------EEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee
Q 015650           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG------VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (403)
Q Consensus        96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~  169 (403)
                      ++.+++.+..+.|..+|..+++.+............      ...+....+..++.+  .+     +.|.-+|.++|+.+
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t--~d-----g~l~AlD~~TG~~~  140 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT--LD-----ASVVALNKNTGKVV  140 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE--TT-----TEEEEEESSSCCEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe--CC-----CEEEEEECCCCCEE
Confidence            555555555455888899888888766554111100      011223334443433  34     89999999999998


Q ss_pred             EEEecCC-----cee-EEEEecC---c--eEEE-e-------cCeEEEEEcCCceeeeEeeccCCC--------------
Q 015650          170 GELSFRS-----EVR-SVKLRRD---R--IIVV-L-------EQKIFVYNFADLKLLHQIETIANP--------------  216 (403)
Q Consensus       170 ~~~~~~~-----~i~-~~~~~~~---~--~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~--------------  216 (403)
                      ..+....     .+. ...+..+   +  .+++ .       ++.|+.+|.++|+.+.........              
T Consensus       141 W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~  220 (582)
T 1flg_A          141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD  220 (582)
T ss_dssp             EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred             eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence            8776211     121 1122222   2  3444 2       689999999999988765431100              


Q ss_pred             ---------------------------ceeEEEeeCCCeEEEEeeCC-----------c-------c----CeEEEEEcc
Q 015650          217 ---------------------------KGLCAVSQGVGSLVLVCPGL-----------Q-------K----GQVRVEHYA  247 (403)
Q Consensus       217 ---------------------------~~~~~~~~~~~~~~~~~~g~-----------~-------d----~~i~v~d~~  247 (403)
                                                 -...++.+..+.+|+.+ +.           .       |    +.|..+|.+
T Consensus       221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~-gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~  299 (582)
T 1flg_A          221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGA-GNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPS  299 (582)
T ss_dssp             TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEE-CCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTT
T ss_pred             cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeC-CCCCcccCcccccCCCcccccCCcccceEEEEeCC
Confidence                                       01245566666666554 21           1       2    589999998


Q ss_pred             CCceeEEe---ecCC-------ceEEEEEc-CCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          248 SKRTKFIM---AHDS-------RIACFALT-QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       248 ~~~~~~~~---~~~~-------~i~~~~~s-p~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      +++..-..   .|..       ...-+... .+|+   +++.++.+|. ++++|..+|+.+..+..
T Consensus       300 TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          300 SGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGF-FYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             TCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             CCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCce-EEEEECCCCCEeccccc
Confidence            87765432   2321       11111221 4674   7888999999 99999999999877654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.52  E-value=5.7e-05  Score=65.48  Aligned_cols=172  Identities=13%  Similarity=0.213  Sum_probs=112.9

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCce-------E-EE---e--cCeEEEEEcC--CceeeeEeec-------c
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-------I-VV---L--EQKIFVYNFA--DLKLLHQIET-------I  213 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~-~~---~--d~~i~i~d~~--~~~~~~~~~~-------~  213 (403)
                      +-+.+||+ +|+.++.+.. ..++.+..-|+-.       + ++   .  +++|.+|++.  ++ .+..+..       .
T Consensus        50 ~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~  126 (355)
T 3amr_A           50 SGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMTDPDHPIATA  126 (355)
T ss_dssp             TEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECSCTTSCEECC
T ss_pred             CCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeeccccccCcCCC
Confidence            78999998 8998888764 6678887777421       2 22   3  4789999773  33 3444411       1


Q ss_pred             CCCceeEEE--eeCCCeEEEEeeCCccCeEEEEEccC---C-----ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEE
Q 015650          214 ANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYAS---K-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (403)
Q Consensus       214 ~~~~~~~~~--~~~~~~~~~~~~g~~d~~i~v~d~~~---~-----~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i  283 (403)
                      .....-+|+  ++....+++... ..+|.+..|++..   +     .++.+. ..+.+..+...+...+|+.+-++.. |
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~-~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~Lyv~eEd~G-I  203 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVT-GKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRLYIAEEDEA-I  203 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEE-CSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTE-E
T ss_pred             CCCeeEEEEEecCCCCcEEEEEE-CCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeEEEecccce-E
Confidence            134455666  554444444433 4779999998843   2     123333 3567889999998899999999987 8


Q ss_pred             EEEEcC-----CCcEEEEEecCCCcccEEEEEe--CCCCC-EEEEEe-CCCcEEEEEee
Q 015650          284 RIFNTL-----DGTLLQEVRRGADRAEIYSLAF--SSNAQ-WLAVSS-DKGTVHVFNLK  333 (403)
Q Consensus       284 ~iwd~~-----~~~~~~~~~~~~~~~~v~~l~~--s~d~~-~l~s~~-~dg~v~iwd~~  333 (403)
                      +.++.+     +++.+..+........+..|++  .++++ +|++++ .++++.+||.+
T Consensus       204 w~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          204 WKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            888865     3456655533222346888887  56666 666666 67799999996

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.52  E-value=0.00011  Score=66.97  Aligned_cols=238  Identities=10%  Similarity=0.016  Sum_probs=139.1

Q ss_pred             CCeEEEEEcCC---CCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           86 PTLLHISFNQD---HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        86 ~~i~~i~~s~d---~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      .....|+|+|+   +.++++-..+.|+.++..++...  ...  ........+++++++.++++....... ...+...+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~--~~~--~~~~~P~giavd~dG~lyVad~~~~~~-~~gv~~~~  213 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD--IKT--TNIGQCADVNFTLNGDMVVVDDQSSDT-NTGIYLFT  213 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE--EEC--CCCSCEEEEEECTTCCEEEEECCSCTT-SEEEEEEC
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE--Eee--cCCCCccEEEECCCCCEEEEcCCCCcc-cceEEEEE
Confidence            34678999985   44444433455999988665543  222  234457788888887755554311000 01233333


Q ss_pred             CCCCce-eEEEecCCceeEEEEec-CceEEEe---cCeEEEEEcCCceeeeEe-eccC-CCceeEEEeeCCCeEEEEeeC
Q 015650          163 DHQSRC-IGELSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQI-ETIA-NPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       163 ~~~~~~-~~~~~~~~~i~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      ...+.. ...+..-.....+++.+ ++.+.+.   ++.|+.+|..++.....+ .... .....++++++++.+|++-  
T Consensus       214 ~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad--  291 (433)
T 4hw6_A          214 RASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY--  291 (433)
T ss_dssp             GGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE--
T ss_pred             CCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe--
Confidence            222211 11222334556788999 7776663   578999998877652332 2111 1223599999998777775  


Q ss_pred             CccCeEEEEEccC--Cce---eEEeec---------------CCceEEEEE---------cCCCCEEEEEeCCCcEEEEE
Q 015650          236 LQKGQVRVEHYAS--KRT---KFIMAH---------------DSRIACFAL---------TQDGQLLATSSTKGTLVRIF  286 (403)
Q Consensus       236 ~~d~~i~v~d~~~--~~~---~~~~~~---------------~~~i~~~~~---------sp~g~~l~s~~~dg~~i~iw  286 (403)
                      ...+.|+.+++..  +.+   ..+.+.               -.....+++         .++|.++++-...+. |+.+
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~  370 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVL  370 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEE
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEE
Confidence            3567899988763  221   222221               123567899         777777666666666 9999


Q ss_pred             EcCCCcEEEEEecCCC----------------cccEEEEEeC-CCCCEEEEEeCCCcEEEEEee
Q 015650          287 NTLDGTLLQEVRRGAD----------------RAEIYSLAFS-SNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       287 d~~~~~~~~~~~~~~~----------------~~~v~~l~~s-~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      +. ++... ++.+...                -.....|+++ ++|.++++=...+.|+.++++
T Consensus       371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            84 66443 3332100                1236789999 566666665677788888765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.50  E-value=0.00032  Score=58.45  Aligned_cols=198  Identities=11%  Similarity=0.104  Sum_probs=126.4

Q ss_pred             EecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCceeEEEec--CCceeEEEEecCceEEEe---cCe
Q 015650          122 RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVVL---EQK  195 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~---d~~  195 (403)
                      +.+. +-...+..++++++ +.+++....+     +.|...|.. ++.++.+..  ......|++.+++.+++.   ++.
T Consensus        20 ~~l~-g~~~~lSGla~~~~~~~L~aV~d~~-----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~   92 (255)
T 3qqz_A           20 KEIA-GITNNISSLTWSAQSNTLFSTINKP-----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYA   92 (255)
T ss_dssp             EECT-TCCSCEEEEEEETTTTEEEEEEETT-----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred             eECC-CcccCcceeEEeCCCCEEEEEECCC-----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCc
Confidence            4555 45557999999975 3444444446     899999987 888888863  357889999999988663   568


Q ss_pred             EEEEEcCCcee---eeEeec------cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC----CceeEEe-------
Q 015650          196 IFVYNFADLKL---LHQIET------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIM-------  255 (403)
Q Consensus       196 i~i~d~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~----~~~~~~~-------  255 (403)
                      +.++++.....   +.....      .......+++.+.++.++++.   +.....+|.++.    .....+.       
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~---E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~  169 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK---EKNPIEVYKVNGLLSSNELHISKDKALQRQ  169 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE---ESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE---CcCCceEEEEcccccCCceeeecchhhccc
Confidence            99998765432   222221      122346899999998888875   223344444432    2222221       


Q ss_pred             ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC--C-----cccEEEEEeCCCCCEEEEEeCCCcEE
Q 015650          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--D-----RAEIYSLAFSSNAQWLAVSSDKGTVH  328 (403)
Q Consensus       256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~l~~s~d~~~l~s~~~dg~v~  328 (403)
                      .+...+.+++++|....|+.-+.....|.++|. +++.+..+....  +     -..--.|+|.++|++.++ ++.+.++
T Consensus       170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y  247 (255)
T 3qqz_A          170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFY  247 (255)
T ss_dssp             CCSSCCCEEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEE
T ss_pred             cccCCceeEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEE
Confidence            123457899999976666555555444889995 466666655321  1     125689999999985544 6776555


Q ss_pred             EEE
Q 015650          329 VFN  331 (403)
Q Consensus       329 iwd  331 (403)
                      .|.
T Consensus       248 ~f~  250 (255)
T 3qqz_A          248 RFT  250 (255)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.50  E-value=0.0002  Score=67.87  Aligned_cols=194  Identities=12%  Similarity=0.147  Sum_probs=113.7

Q ss_pred             CCCEEEEEc-CCcEEEEEc-CCCeeEEEEecccCcce--------eEEEEee--eCCe--EEEeeCCCCCCCCCceEEEE
Q 015650           96 DHGCFAAGT-DHGFRIYNC-DPFREIFRRDFERGGGI--------GVVEMLF--RCNI--LALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        96 d~~~l~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~--------~v~~~~~--~~~~--~~~~s~~~d~~~~~~~i~iw  161 (403)
                      ++.+++++. ++.|.-+|. .+++.+....+......        ....+.+  ..+.  ..++.+..+     +.|.-+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d-----g~l~Al  136 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLD-----GNVAAL  136 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTT-----SEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCC-----CEEEEE
Confidence            444444444 455888888 78888766655311100        0112233  2222  012233344     899999


Q ss_pred             ECCCCceeEEEecCC-----ceeE-EEEecCceEEE-e-------cCeEEEEEcCCceeeeEeeccCCCc----------
Q 015650          162 DDHQSRCIGELSFRS-----EVRS-VKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANPK----------  217 (403)
Q Consensus       162 d~~~~~~~~~~~~~~-----~i~~-~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~~----------  217 (403)
                      |..+|+.+.......     .+.+ ..+ .++.+++ .       ++.|+.+|.++|+.+..+.......          
T Consensus       137 Da~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~  215 (599)
T 1w6s_A          137 NAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI  215 (599)
T ss_dssp             ETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred             ECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccc
Confidence            999999988776221     2221 122 2566655 3       5899999999999988775432110          


Q ss_pred             ----------------------------eeEEEeeCCCeEEEEeeCCc--------------cCeEEEEEccCCceeEEe
Q 015650          218 ----------------------------GLCAVSQGVGSLVLVCPGLQ--------------KGQVRVEHYASKRTKFIM  255 (403)
Q Consensus       218 ----------------------------~~~~~~~~~~~~~~~~~g~~--------------d~~i~v~d~~~~~~~~~~  255 (403)
                                                  ...++.+..+.+|+.+ +..              .+.|..+|.++++..-..
T Consensus       216 ~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~-g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~  294 (599)
T 1w6s_A          216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT-GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY  294 (599)
T ss_dssp             TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC-CCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence                                        1245556666555544 321              247889999987764322


Q ss_pred             ---ecCC--------ceEEEEEc-CCC---CEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          256 ---AHDS--------RIACFALT-QDG---QLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       256 ---~~~~--------~i~~~~~s-p~g---~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                         .|..        ++. +... .+|   ..++.++.+|. ++++|.++|+.+....
T Consensus       295 q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          295 QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK  350 (599)
T ss_dssp             ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeeccc
Confidence               2211        111 2222 467   56777889999 9999999999987765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.49  E-value=0.00054  Score=60.71  Aligned_cols=218  Identities=13%  Similarity=0.175  Sum_probs=141.3

Q ss_pred             cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecC
Q 015650          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (403)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~  186 (403)
                      .|.|.|+........+.+.  ....|  |.+...-.++=. +       ..+.|+|+++.+.++.+...+.|.-=.|-.+
T Consensus        49 ~vvIiDl~~~~~~~rrpi~--AdsAI--MnP~~~iiALra-g-------~~lQiFnle~K~klks~~~~e~VvfWkWis~  116 (494)
T 1bpo_A           49 QVVIIDMNDPSNPIRRPIS--ADSAI--MNPASKVIALKA-G-------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  116 (494)
T ss_dssp             EEEEEETTSTTSCEEEECC--CSEEE--ECSSSSCEEEEE-T-------TEEEEEETTTTEEEEEEECSSCCCEEEEEET
T ss_pred             eEEEEECCCCCcceecccc--cceee--eCCCCcEEEEec-C-------CeEEEEchHHhhhhcceecCCCceEEEecCC
Confidence            3889999876666555554  22222  222223333333 2       7999999999999999997777877777665


Q ss_pred             ceE-EEecCeEEEEEcCC-ceeeeEeeccC--CCceeEEEeeCCCeEEEEeeC------CccCeEEEEEccCCceeEEee
Q 015650          187 RII-VVLEQKIFVYNFAD-LKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPG------LQKGQVRVEHYASKRTKFIMA  256 (403)
Q Consensus       187 ~~~-~~~d~~i~i~d~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g------~~d~~i~v~d~~~~~~~~~~~  256 (403)
                      ..+ ++++..|+-|++.. ..+.+.+..|.  .....+.+..+.+..+++..|      .-.|.+.+|..+.+..+.+.+
T Consensus       117 ~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG  196 (494)
T 1bpo_A          117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (494)
T ss_dssp             TEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred             CeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence            554 44899999999974 34555554432  234455554444443433322      235789999999999999999


Q ss_pred             cCCceEEEEEcCCC---CEEEEEeCC---CcEEEEEEcCCC--------cEEEEEe--cCCCcccEEEEEeCCCCCEEEE
Q 015650          257 HDSRIACFALTQDG---QLLATSSTK---GTLVRIFNTLDG--------TLLQEVR--RGADRAEIYSLAFSSNAQWLAV  320 (403)
Q Consensus       257 ~~~~i~~~~~sp~g---~~l~s~~~d---g~~i~iwd~~~~--------~~~~~~~--~~~~~~~v~~l~~s~d~~~l~s  320 (403)
                      |......+.+.-+.   .+++.+...   +. ++|-++...        +....+.  ......--.++..++....+..
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv  275 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCE-EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence            98776666553221   244444442   55 999988532        1111111  1111234567888888889999


Q ss_pred             EeCCCcEEEEEeecCCC
Q 015650          321 SSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       321 ~~~dg~v~iwd~~~~~~  337 (403)
                      -+.-|.|++||+.++..
T Consensus       276 iTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          276 ITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EETTSEEEEEETTTCCE
T ss_pred             EecCceEEEEeccccee
Confidence            99999999999999984

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=0.00017  Score=65.77  Aligned_cols=237  Identities=10%  Similarity=0.109  Sum_probs=135.8

Q ss_pred             CeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCCCCceEEEEEC
Q 015650           87 TLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        87 ~i~~i~~s~-d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ....|+++| ++..|.++. .+.|+.++.+......  ...  .......+++++++. ++++...... ....+.+++ 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~--~~~--~~~~P~~ia~d~~G~~lyvad~~~~~-~~~~v~~~~-  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST--VYS--GLSKVRTICWTHEADSMIITNDQNNN-DRPNNYILT-  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE--EEC--CCSCEEEEEECTTSSEEEEEECCSCT-TSEEEEEEE-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE--Eec--CCCCcceEEEeCCCCEEEEEeCCCCc-ccceEEEEe-
Confidence            567889998 344454444 4458888887654332  222  344567888888765 4444332100 001344344 


Q ss_pred             CCCcee--EEEecCCceeEEEEec-CceEEEe---cCeEEEEEcCCceeeeEeecc-CCCceeEEEeeCCCeEEEEeeCC
Q 015650          164 HQSRCI--GELSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       164 ~~~~~~--~~~~~~~~i~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      ..+...  ..+........++++| ++.+++.   ++.|+.++...+......... ...-..++++++++.+|++-  .
T Consensus       212 ~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d--~  289 (430)
T 3tc9_A          212 RESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV--V  289 (430)
T ss_dssp             GGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE--T
T ss_pred             CCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE--C
Confidence            334332  3333334567888999 6776663   678999998766542222221 22346799999998777765  4


Q ss_pred             ccCeEEEEEccCC--c---eeEEeec---------------CCceE-EEEEc--------CCCCEEEEEeCCCcEEEEEE
Q 015650          237 QKGQVRVEHYASK--R---TKFIMAH---------------DSRIA-CFALT--------QDGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       237 ~d~~i~v~d~~~~--~---~~~~~~~---------------~~~i~-~~~~s--------p~g~~l~s~~~dg~~i~iwd  287 (403)
                      ..+.|..++.+..  .   ...+.+.               -.... .++..        ++|.++++-...+. |+.++
T Consensus       290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~  368 (430)
T 3tc9_A          290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT  368 (430)
T ss_dssp             TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC
T ss_pred             CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC
Confidence            5688999887642  2   1222221               01122 45553        34665555555566 99998


Q ss_pred             cCCCcEEEEEecC----C---C--------cccEEEEEeCCC-CCEEEEEeCCCcEEEEEee
Q 015650          288 TLDGTLLQEVRRG----A---D--------RAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       288 ~~~~~~~~~~~~~----~---~--------~~~v~~l~~s~d-~~~l~s~~~dg~v~iwd~~  333 (403)
                       .+++.....-.+    .   .        -.....|+++|+ +.++++-.....|+.++++
T Consensus       369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence             567554333210    0   0        125789999995 5555555567788888764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.46  E-value=2e-05  Score=77.42  Aligned_cols=241  Identities=11%  Similarity=0.026  Sum_probs=127.7

Q ss_pred             CeEEEEEc-CCCCEEEEEcCC------cEEEEEcCCC-eeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           87 TLLHISFN-QDHGCFAAGTDH------GFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        87 ~i~~i~~s-~d~~~l~~~~~~------~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      .+...+|| |||++||.+.+.      .|++++++++ +.+ ...+.    .....+.|++|+..|+....+.......|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc----CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            67889999 999999876521      2899999887 521 11111    11335778888643332222200001368


Q ss_pred             EEEECCCCce--eEEEe--cCCceeEEEEecCceEEE--e----cCeEEEEEcCCce-ee--eEee-ccCCCceeEEEee
Q 015650          159 MIWDDHQSRC--IGELS--FRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLK-LL--HQIE-TIANPKGLCAVSQ  224 (403)
Q Consensus       159 ~iwd~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~--~----d~~i~i~d~~~~~-~~--~~~~-~~~~~~~~~~~~~  224 (403)
                      +++++.+++.  ...+.  .......+.|+||+++++  .    ...|+++|+.++. ..  ..+. ........+.+ .
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~-~  328 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM-H  328 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE-E
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee-e
Confidence            8889877642  23333  233456789999999887  2    3469999998752 12  3332 22222222222 2


Q ss_pred             CCCeEEEEeeCC--ccCeEEEEEccC-CceeE-EeecCC--ceEEEEEcCCCCEE-EEEeCCCc-EEEEEEc-------C
Q 015650          225 GVGSLVLVCPGL--QKGQVRVEHYAS-KRTKF-IMAHDS--RIACFALTQDGQLL-ATSSTKGT-LVRIFNT-------L  289 (403)
Q Consensus       225 ~~~~~~~~~~g~--~d~~i~v~d~~~-~~~~~-~~~~~~--~i~~~~~sp~g~~l-~s~~~dg~-~i~iwd~-------~  289 (403)
                      .++.+++.+.-.  ....|..+++.+ +.... +..+..  .+..+.+.  +..| ++...++. .|+++|+       .
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~  406 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFK  406 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCC
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEeccccccccc
Confidence            377776665221  234677777765 33333 444443  34555554  4444 55556664 1566675       3


Q ss_pred             CCcEEEEEecCCCcccEEEEEe----CCCCC-EEEEEeCC---CcEEEEEeecCC
Q 015650          290 DGTLLQEVRRGADRAEIYSLAF----SSNAQ-WLAVSSDK---GTVHVFNLKVNS  336 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~----s~d~~-~l~s~~~d---g~v~iwd~~~~~  336 (403)
                      +++.+..+... ....+..+.+    ++++. ++++.+..   ..++.+|+.+++
T Consensus       407 ~g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          407 AGTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             CCccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            44413344321 1123444433    44665 33443322   356666666554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.46  E-value=0.0007  Score=61.04  Aligned_cols=206  Identities=8%  Similarity=-0.033  Sum_probs=124.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-C-CcEEEEEcCCCe--eEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceE
Q 015650           84 PPPTLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~-~-~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i  158 (403)
                      ....+..|+|++.+..|.... . +.|+.++++...  ......+. ........+++.. .+.++++....     +.|
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~~~-----~~I  183 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVL-----GTV  183 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-SSCSCEEEEEEETTTTEEEEEETTT-----TEE
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-CCCCCcccEEEEecCCceEEEECCC-----CeE
Confidence            456788999998766665554 3 348888876421  00111121 2233455666654 33344444334     789


Q ss_pred             EEEECCCCceeEEEe-cCCceeEEEEecC-ceEEEec----CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      .+.++........+. .-.....|++.|. +.++.+|    +.|...++........+......-..+++++++..+|++
T Consensus       184 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             EEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence            999977555444444 3456789999985 4444443    578888876433322233333445779999988888877


Q ss_pred             eeCCccCeEEEEEccCCceeEEee---cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          233 CPGLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      -  ...+.|..+|++......+..   .-.....+++. .+.++++-...+. |..+|..+|+.+..+..
T Consensus       264 D--~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~-V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          264 D--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             E--TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS-EEEEESSSCCCCEEEEC
T ss_pred             E--CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe-EEEEEcCCCCceEEEec
Confidence            5  346789999998865555432   22345677773 3445555556677 99999878877766663

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.45  E-value=0.00079  Score=64.33  Aligned_cols=228  Identities=7%  Similarity=-0.055  Sum_probs=143.5

Q ss_pred             CEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cC
Q 015650           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR  175 (403)
Q Consensus        98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~  175 (403)
                      .+|+.+..+.|+..++++........+.  .-.....++|++ ++..+.+....     +.|+.+++........+. ..
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~l~~d~~~~~lywtD~~~-----~~I~r~~~~g~~~~~v~~~g~   79 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPLT--GVKEASALDFDVTDNRIYWTDISL-----KTISRAFMNGSALEHVVEFGL   79 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCCC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSC
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEcC--CCCceEEEEEECCCCEEEEEECCC-----CeEEEEECCCCCcEEEEeCCC
Confidence            4666666777999999865543222222  334677888886 34445554445     889999876554433343 23


Q ss_pred             CceeEEEEecC-ceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650          176 SEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (403)
Q Consensus       176 ~~i~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~  251 (403)
                      .....+++.+. +.+.+.   .+.|.+.++........+......-..+++.|....+|++-.| ..+.|...+++....
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSER  158 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCce
Confidence            45778888865 333333   5689999986433222222333344788999877777665433 357888888888766


Q ss_pred             eEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 015650          252 KFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (403)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw  330 (403)
                      ..+...-.....|+++++++.|+.+.. .+. |..+|+..... ..+..  ......+|++.. +.++++-...+.|...
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~-I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNL-IESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERA  233 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCE-EEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence            665555567889999998777776655 445 99999865443 33332  223456777754 3444454467888888


Q ss_pred             EeecCCCC
Q 015650          331 NLKVNSGS  338 (403)
Q Consensus       331 d~~~~~~~  338 (403)
                      |..+++..
T Consensus       234 dk~tg~~~  241 (628)
T 4a0p_A          234 NKTSGQNR  241 (628)
T ss_dssp             ETTTCCSC
T ss_pred             ECCCCCce
Confidence            87666543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00045  Score=62.92  Aligned_cols=148  Identities=11%  Similarity=0.055  Sum_probs=90.3

Q ss_pred             EEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCce-EEEecC-------eEEEEEcC
Q 015650          132 VVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-IVVLEQ-------KIFVYNFA  202 (403)
Q Consensus       132 v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~d~-------~i~i~d~~  202 (403)
                      ...+++++ +...|......     +.|+.+|+..++.............+++++++. +++.|.       .+..++. 
T Consensus       139 P~~lavdp~~~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-  212 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQ-----HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-  212 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBT-----EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred             CCEEEECCCCCCeEEEEeCC-----CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence            35667775 22233333332     678889987766544444556688999999987 444432       3444553 


Q ss_pred             Cceee--eEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee--cCCceEEEEEcCCCCEEEEEeC
Q 015650          203 DLKLL--HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATSST  278 (403)
Q Consensus       203 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~--~~~~i~~~~~sp~g~~l~s~~~  278 (403)
                      .+...  ..+.. ......++++++...++++-  ..++.|..++...+....+..  .......|+|+|+|++|+.+..
T Consensus       213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d--~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          213 ESGFKVITELTK-GQNCNGAETHPINGELYFNS--WNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEE--TTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             CCceeeeeeecc-CCCceEEEEeCCCCEEEEEE--CCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            33222  23322 23346678888655666554  356789999988766533322  2235688999999996665554


Q ss_pred             -CCcEEEEEEcC
Q 015650          279 -KGTLVRIFNTL  289 (403)
Q Consensus       279 -dg~~i~iwd~~  289 (403)
                       .+. |..++..
T Consensus       290 ~~~~-I~~~~~d  300 (430)
T 3tc9_A          290 NQHY-ILRSDYD  300 (430)
T ss_dssp             TTTE-EEEEEEE
T ss_pred             CCCE-EEEEeCC
Confidence             555 9988764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=0.00054  Score=62.80  Aligned_cols=246  Identities=6%  Similarity=-0.004  Sum_probs=139.4

Q ss_pred             CeEEEEEcC-CCCEEEEEc-C-CcEEEEEcCCCeeEEEEecccCcceeEEEEee-------eCCeE-EEeeCCCCCC-CC
Q 015650           87 TLLHISFNQ-DHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-------RCNIL-ALVGGGPDPQ-YP  154 (403)
Q Consensus        87 ~i~~i~~s~-d~~~l~~~~-~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~-~~~s~~~d~~-~~  154 (403)
                      ....|+|.| ++..|.++. . +.|++.|.+.+..................++|       ++++. ++++...+.. ..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            567899998 354444444 3 33888887765544322221112335788888       87765 3333332100 00


Q ss_pred             CceEEEEECCC-Ccee-----EEEecCCceeEEEEecC-ceEEE---ecCeEEEEEcC-------Ccee-----------
Q 015650          155 LNKVMIWDDHQ-SRCI-----GELSFRSEVRSVKLRRD-RIIVV---LEQKIFVYNFA-------DLKL-----------  206 (403)
Q Consensus       155 ~~~i~iwd~~~-~~~~-----~~~~~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~-------~~~~-----------  206 (403)
                      ...|.+++... +...     ..+..-.....++++|+ +.+++   .++.|+.+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            02366665333 2221     22321234457888994 55444   36789999987       4543           


Q ss_pred             eeE-eec-cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--Cce---eEEeec---C------------CceE-E
Q 015650          207 LHQ-IET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRT---KFIMAH---D------------SRIA-C  263 (403)
Q Consensus       207 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~---~~~~~~---~------------~~i~-~  263 (403)
                      ... +.. ....-..++++++++.+|++-  .....|+.++...  +.+   ..+-+.   .            .... .
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD--~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGV--INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEe--CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence            112 221 123346899999998777775  3567888877654  222   223221   0            1233 4


Q ss_pred             EEEc-------CCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC----------------------cccEEEEEeCCC
Q 015650          264 FALT-------QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----------------------RAEIYSLAFSSN  314 (403)
Q Consensus       264 ~~~s-------p~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~----------------------~~~v~~l~~s~d  314 (403)
                      +...       ++|.++++-..+.. |+.++ .+|.. .++-+...                      -.....|+++++
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEccccccccCCCeEEEEECCCCE-EEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            4554       45666666556666 99998 56744 44433100                      124678999997


Q ss_pred             -CCEEEEEeCCCcEEEEEeecCCC
Q 015650          315 -AQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       315 -~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                       |.++++=.....|+.++++....
T Consensus       455 ~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEECCCC-
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcc
Confidence             66666656778899999987664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.26  E-value=0.00021  Score=69.08  Aligned_cols=231  Identities=9%  Similarity=0.001  Sum_probs=120.9

Q ss_pred             eEEEEEcCCCCEEEEEcC-C-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC-CCCCCCCceEEEEECC
Q 015650           88 LLHISFNQDHGCFAAGTD-H-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDDH  164 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~i~iwd~~  164 (403)
                      ..++++..+|+++++|+. . .+.+||..+.+-.....+.  ....-......+++.+++.++ .+.......+.+||..
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~--~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ--VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS--SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC--ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            345678899999999983 3 4999998876544323332  111112333343444444444 3311122579999988


Q ss_pred             CCceeEE-------Eec---------CCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCC---------Cc
Q 015650          165 QSRCIGE-------LSF---------RSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN---------PK  217 (403)
Q Consensus       165 ~~~~~~~-------~~~---------~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~---------~~  217 (403)
                      +++....       +..         ...+..+.. .++..+.  ....+..||..+............         ..
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence            7653322       000         011111111 1222222  235688899887654333221111         11


Q ss_pred             eeEEEeeCCCeEEEEeeCCcc-------C---eEEEEEccCCceeEEe---ecCC-ceEEEEEcCCCCEEEEEeCC----
Q 015650          218 GLCAVSQGVGSLVLVCPGLQK-------G---QVRVEHYASKRTKFIM---AHDS-RIACFALTQDGQLLATSSTK----  279 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d-------~---~i~v~d~~~~~~~~~~---~~~~-~i~~~~~sp~g~~l~s~~~d----  279 (403)
                      ..+.+...+..+ +++.|...       .   .|.+||..+..-..+.   .... .-.++...|+|++++.|+.+    
T Consensus       402 ~av~~~~~~~~i-~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~  480 (656)
T 1k3i_A          402 NAVMYDAVKGKI-LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP  480 (656)
T ss_dssp             EEEEEETTTTEE-EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred             ceEeccCCCCeE-EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence            233333334444 44444211       1   6778887776554442   1222 23455677899999999864    


Q ss_pred             -------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 015650          280 -------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (403)
Q Consensus       280 -------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~  323 (403)
                             .. +.+||..+.+-...-.............+.+||++++.|+.
T Consensus       481 ~~~~~~~~~-v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          481 FEDSTPVFT-PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TCCCSBCCC-CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCcccc-eEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                   45 89999877654321111111122234556799999999984

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.26  E-value=0.002  Score=63.12  Aligned_cols=175  Identities=8%  Similarity=-0.041  Sum_probs=115.2

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecC-ceEEEe---cCeEEEEEcCCc----eeeeEeeccCCCceeEEEeeCCC
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      ..|+..++...+....+.....+..|+|.+. +.++++   .+.|+.+++...    .....+.........+++.+.++
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~  483 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  483 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC
Confidence            5678888776655554555567789999984 444443   578999998652    22233332334456799999888


Q ss_pred             eEEEEeeCCccCeEEEEEccCCceeEEee-cCCceEEEEEcCCCCEEEEEeC-C-CcEEEEEEcCCCcEEEEEecCCCcc
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSST-K-GTLVRIFNTLDGTLLQEVRRGADRA  304 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~s~~~-d-g~~i~iwd~~~~~~~~~~~~~~~~~  304 (403)
                      .+|++-  ...+.|.+.++.......+.. .......|+++|.+.+|+.... . +. |.+.++..... ..+... .-.
T Consensus       484 ~LY~tD--~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~-I~~~~~dG~~~-~~lv~~-~l~  558 (791)
T 3m0c_C          484 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDI-YSLVTE-NIQ  558 (791)
T ss_dssp             EEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCCE-EEEECS-SCS
T ss_pred             cEEEEe--cCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCe-EEEEecCCCce-EEEEeC-CCC
Confidence            888765  356899999999876655543 4456889999998666665543 3 56 89998854443 344321 235


Q ss_pred             cEEEEEeCCCCCEEEEEe-CCCcEEEEEeecC
Q 015650          305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~  335 (403)
                      ....|++++.+..|+.+. ..+.|..++++..
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            788999998777776664 4567888777543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.23  E-value=6.7e-05  Score=73.67  Aligned_cols=198  Identities=8%  Similarity=0.022  Sum_probs=111.4

Q ss_pred             eEEEEeee-CCeEEEeeCCCCCCCCCceEEEEECCCC-ceeEE-EecCCceeEEEEecCceEEE---ec-----CeEEEE
Q 015650          131 GVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGE-LSFRSEVRSVKLRRDRIIVV---LE-----QKIFVY  199 (403)
Q Consensus       131 ~v~~~~~~-~~~~~~~s~~~d~~~~~~~i~iwd~~~~-~~~~~-~~~~~~i~~~~~~~~~~~~~---~d-----~~i~i~  199 (403)
                      .+....|+ ||+..++-...........|+++|+.++ +.+.. +.  .....+.|+||++.++   .+     ..|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            67888999 9987655221110000146999999998 63321 21  2245789999987665   23     368889


Q ss_pred             EcCCcee--eeEeec-cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ce--eEEe-ecCCceEEEEEcCCCC
Q 015650          200 NFADLKL--LHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RT--KFIM-AHDSRIACFALTQDGQ  271 (403)
Q Consensus       200 d~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~--~~~~-~~~~~i~~~~~sp~g~  271 (403)
                      ++.+++.  ...+.. .......+.++++++.+++.........|.++|+.++  ..  ..+. .......++.|+. |.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~  331 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS  331 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence            9877642  222222 1223456789999998777664434567888998874  33  3333 2344555565544 55


Q ss_pred             EEEE-EeCC----CcEEEEEEcCCCcEEEE-EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          272 LLAT-SSTK----GTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       272 ~l~s-~~~d----g~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      .|+. ...+    .. |..+|+.++..... +..+.....+..+.+. .+.++++...++..+||-++
T Consensus       332 ~l~~~t~~~~a~~~~-L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d  397 (751)
T 2xe4_A          332 HLVILTNEGGAVNHK-LLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM  397 (751)
T ss_dssp             EEEEEECTTTCTTCE-EEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEeCCCCCCCcE-EEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence            5544 4333    24 77778765222122 2221122245666665 23455566677865555443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.22  E-value=0.0012  Score=60.24  Aligned_cols=191  Identities=14%  Similarity=0.033  Sum_probs=111.4

Q ss_pred             EEEEeeeCC---eEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEecC-------eEEEEEc
Q 015650          132 VVEMLFRCN---ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ-------KIFVYNF  201 (403)
Q Consensus       132 v~~~~~~~~---~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~-------~i~i~d~  201 (403)
                      ...++++++   +.++++...      +.|+.++..+++.............+++++++.+++.|.       .+..++.
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~------~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR------DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT------SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred             CceEEEccccCCCEEEEEeCC------CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence            446677763   444444321      578888887776554444455688999999998666542       2444443


Q ss_pred             CCcee-eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEee--cCCceEEEEEcCCCCEEEEEe
Q 015650          202 ADLKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HDSRIACFALTQDGQLLATSS  277 (403)
Q Consensus       202 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~--~~~~i~~~~~sp~g~~l~s~~  277 (403)
                      ..+.. ...+. .......+++.++...+|++.  ..++.|+.+|..++.. ..+..  ....-..++|+|+|++|+.+.
T Consensus       215 ~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d--~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          215 ASGFTERLSLC-NARGAKTCAVHPQNGKIYYTR--YHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             GGTTCCEEEEE-ECSSBCCCEECTTTCCEEECB--TTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CCCeecccccc-ccCCCCEEEEeCCCCeEEEEE--CCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            22211 01222 123335578888555565553  3567899999886555 33322  122335799999999666555


Q ss_pred             C-CCcEEEEEEcC--CCcE--EEEEecC-C------------CcccEEEEEe---------CCCCCEEEEEeCCCcEEEE
Q 015650          278 T-KGTLVRIFNTL--DGTL--LQEVRRG-A------------DRAEIYSLAF---------SSNAQWLAVSSDKGTVHVF  330 (403)
Q Consensus       278 ~-dg~~i~iwd~~--~~~~--~~~~~~~-~------------~~~~v~~l~~---------s~d~~~l~s~~~dg~v~iw  330 (403)
                      . .+. |+.++..  +++.  ...+.+. .            .-.....+++         .++|.++++-...+.|+.+
T Consensus       292 ~~~~~-I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          292 NGKHC-IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             TTTTE-EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             CCCCE-EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence            4 455 9998865  2321  1222221 0            0123677899         7777777666677788888


Q ss_pred             Ee
Q 015650          331 NL  332 (403)
Q Consensus       331 d~  332 (403)
                      +.
T Consensus       371 ~~  372 (433)
T 4hw6_A          371 TP  372 (433)
T ss_dssp             CT
T ss_pred             CC
Confidence            63

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.20  E-value=0.0015  Score=56.79  Aligned_cols=197  Identities=9%  Similarity=-0.001  Sum_probs=117.8

Q ss_pred             CeEEEEEcCCCCEEEEEc-C-CcEEEEEcCCCee---EEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEE
Q 015650           87 TLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~-~-~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      .+.+++|.+.+..|.... . +.|..++.+....   .....+     .....+++.. .+.++++....     +.|.+
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l-----~~p~glavd~~~g~ly~~d~~~-----~~I~~  105 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL-----LSPDGLACDWLGEKLYWTDSET-----NRIEV  105 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-----SCCCEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-----CCccEEEEEcCCCeEEEEECCC-----CEEEE
Confidence            467889998665555554 3 3488888765421   111111     2233455553 33344443333     78999


Q ss_pred             EECCCCceeEEEe-cCCceeEEEEecC-ceEEEec----CeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEEEe
Q 015650          161 WDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVVLE----QKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       161 wd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~~d----~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      +++........+. .......+++.|. +.+..+|    +.|..+++. |.....+ ......-..+++++++..+|++-
T Consensus       106 ~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          106 SNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence            9976543332232 3456789999986 4444443    578888875 3333333 22223346799999888888775


Q ss_pred             eCCccCeEEEEEccCCceeEEee-cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          234 PGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                        ...+.|..+|++......+.. .......+++.. +.++++-...+. |..+|..+++.+..+.
T Consensus       185 --~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~-V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          185 --AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS-ILACNKYTGEGLREIH  246 (318)
T ss_dssp             --TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEE
T ss_pred             --CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe-EEEEECCCCCceEEEe
Confidence              356899999998755544432 344567777753 344455445566 8999987787666655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.16  E-value=6.9e-06  Score=79.70  Aligned_cols=231  Identities=10%  Similarity=-0.065  Sum_probs=127.5

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCC----CceeEEEe
Q 015650           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELS  173 (403)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~----~~~~~~~~  173 (403)
                      +|+....+.|++.++++....  ..+.  ....+..++|.+ .+.++++....     +.|+.+++..    ......+.
T Consensus       379 ~ll~~~~~~I~~id~~~~~~~--~~~~--~~~~p~gla~d~~~~~Ly~sD~~~-----~~I~~~~~~g~~~~~~~~~~i~  449 (699)
T 1n7d_A          379 YLFFTNRHEVRKMTLDRSEYT--SLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS  449 (699)
T ss_dssp             CBCCCCTTC-CEECTTSCCEE--CCSC--CCTTCCCCEEETTTTEEEECCTTT-----TSBEEEESCCCCC-CCCCCBCC
T ss_pred             eEEecCccceEEEeCCCCcce--eeec--cCcceEEEccccccCeEEEEecCC-----CeEEEEecCCCCCCcceEEEEe
Confidence            344444556888887665432  2222  223455677775 34444444444     7899998875    22222222


Q ss_pred             -cCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC
Q 015650          174 -FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (403)
Q Consensus       174 -~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~  248 (403)
                       .......|++.+ .+.+++   ..+.|.++++........+.........+++.|.+..+|++-.+ ..+.|.++++..
T Consensus       450 ~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG  528 (699)
T 1n7d_A          450 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG  528 (699)
T ss_dssp             SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSS
T ss_pred             CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCC
Confidence             123455678874 344444   35789999986543333333223344678888877777665422 237788888776


Q ss_pred             CceeEEe-ecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCc
Q 015650          249 KRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT  326 (403)
Q Consensus       249 ~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~  326 (403)
                      .....+. ..-.....|+|+|++..|+.+. ..+. |.++|+........+...........|++..+ .++++....+.
T Consensus       529 ~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~  606 (699)
T 1n7d_A          529 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA  606 (699)
T ss_dssp             CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred             CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence            5444432 2234567899999766555544 4556 99999864333222221111123345555443 34445556788


Q ss_pred             EEEEEeecCCCCCCC
Q 015650          327 VHVFNLKVNSGSARS  341 (403)
Q Consensus       327 v~iwd~~~~~~~~~~  341 (403)
                      |..++..+++....+
T Consensus       607 V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          607 IFSANRLTGSDVNLL  621 (699)
T ss_dssp             EEEEETTTEEEEECC
T ss_pred             EEEEEccCCCceEEe
Confidence            999987766644333

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.09  E-value=0.0023  Score=61.03  Aligned_cols=230  Identities=10%  Similarity=-0.018  Sum_probs=131.3

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCce-eEEEe-
Q 015650           97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS-  173 (403)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~-~~~~~-  173 (403)
                      ..+|.-+..+.|+..+++..........  ........+.|++ ++..+.+....     +.|..+++..... ...+. 
T Consensus         9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~--~~~~~~~~ld~~~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~~v~~~   81 (619)
T 3s94_A            9 APLLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVS   81 (619)
T ss_dssp             -CCEEEECSSBEEEECCC---------C--BCCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC-----CEEEECS
T ss_pred             CceEEEeccccEEEEeCCCCcceEEEEE--cCCCceEEEEEEeCCCEEEEEECCC-----CeEEEEEccCCCceEEEEeC
Confidence            3456666677799988875431211222  2344567888876 34444444444     7888888765532 22233 


Q ss_pred             cCCceeEEEEecC-ceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC
Q 015650          174 FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (403)
Q Consensus       174 ~~~~i~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~  249 (403)
                      .-.....+++.+. +.+.+.   .+.|.+.++........+......-..+++.|....+|++-.| ..+.|...+++..
T Consensus        82 ~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~  160 (619)
T 3s94_A           82 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGS  160 (619)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSC
T ss_pred             CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCC
Confidence            2357889999984 444443   5789999986533222222333445678999987777766433 3567888888875


Q ss_pred             ceeEEe-ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          250 RTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       250 ~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                      ....+. ..-.....|++++++..|+.+.. .+. |..+|+..... +.+... ......+|++..+ ..+++-...+.|
T Consensus       161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~~-~~~~~~-~~~~P~gi~~~~~-~ly~td~~~~~V  236 (619)
T 3s94_A          161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNR-QAVVKG-SLPHPFALTLFED-ILYWTDWSTHSI  236 (619)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC-EEEESSSCCEE-C----------CCCEEESSS-EEEEECTTTCSE
T ss_pred             ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCCCcc-EEEEeC-CCCCceEEEEeCC-EEEEecCCCCEE
Confidence            554443 33456789999997766665544 456 99998854333 223211 1122346777655 334444467788


Q ss_pred             EEEEeecCCCC
Q 015650          328 HVFNLKVNSGS  338 (403)
Q Consensus       328 ~iwd~~~~~~~  338 (403)
                      ...|..+++..
T Consensus       237 ~~~d~~tg~~~  247 (619)
T 3s94_A          237 LACNKYTGEGL  247 (619)
T ss_dssp             EEEESSSCCCC
T ss_pred             EEEECCCCccc
Confidence            88888777643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.01  E-value=0.012  Score=56.25  Aligned_cols=174  Identities=10%  Similarity=-0.050  Sum_probs=116.1

Q ss_pred             ceEEEEECCCCceeEEEe--cCCceeEEEEecCceE-EEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRII-VVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~-~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (403)
                      +.|+..++.+......+.  .-..+..++|.+.... ..+   ++.|+.+++........+.........+++.+.++.+
T Consensus        15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L   94 (628)
T 4a0p_A           15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL   94 (628)
T ss_dssp             TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE
Confidence            689999998765443333  3346789999985443 333   6789999986543333333333345678999888888


Q ss_pred             EEEeeCCccCeEEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeC--CCcEEEEEEcCCCcEEEEEecCCCcccE
Q 015650          230 VLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (403)
Q Consensus       230 ~~~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~--dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (403)
                      |++-  ...+.|.+.+++......+. ..-.....|+++|...+|+....  .+. |...++........+.   .-...
T Consensus        95 Y~tD--~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~-I~r~~~dG~~~~~l~~---~~~~P  168 (628)
T 4a0p_A           95 YWAD--TGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK-IDRAAMDGSERTTLVP---NVGRA  168 (628)
T ss_dssp             EEEE--TTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSCEEEEC---SCSSE
T ss_pred             EEEE--CCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCE-EEEEeCCCCceEEEEC---CCCCc
Confidence            7764  35688999999886655443 34455789999996556655542  456 8888875444333332   33568


Q ss_pred             EEEEeCCCCCEEEEEe-CCCcEEEEEeecC
Q 015650          307 YSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~  335 (403)
                      ..|+++++++.|..+. ..+.|..++++..
T Consensus       169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            8999999877776664 5677888888654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.00  E-value=8.7e-05  Score=72.03  Aligned_cols=201  Identities=9%  Similarity=-0.051  Sum_probs=116.9

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCC----CeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceE
Q 015650           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDP----FREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i  158 (403)
                      ..+..|+|.+.+..|....  .+.|+.++++.    ....  ..+. ........+++.. .+.++++....     +.|
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~-~~~~~P~glavD~~~g~LY~tD~~~-----~~I  477 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVIS-RDIQAPDGLAVDWIHSNIYWTDSVL-----GTV  477 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCC-SCC--CCCEECCCSSSBCEECCTTT-----SCE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEe-CCCCCcceEEEEeeCCcEEEEeccC-----CeE
Confidence            4567889998777776665  34488888764    1111  1111 1111223445542 23333343333     789


Q ss_pred             EEEECCCCceeEEEe-cCCceeEEEEecCc-eEEEec----CeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEE
Q 015650          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDR-IIVVLE----QKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~d----~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      .++++........+. .......+++.|.+ .++++|    +.|..+++.. .....+ ......-..+++++++..+|+
T Consensus       478 ~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             EEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred             EEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccCCEEEE
Confidence            999976544333333 23456788999854 444433    6788887653 322222 222233467999999888887


Q ss_pred             EeeCCccCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (403)
                      +-  ...+.|.++++.......+...   ......|++..+ .++++....+. |..+|..+++.+..+..
T Consensus       557 aD--~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          557 VD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-IFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             EE--TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-EEEEETTTEEEEECCCT
T ss_pred             Ee--cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-EEEEEccCCCceEEeec
Confidence            75  3467899999987555444321   223445666543 34445555667 99999888888777653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.83  E-value=0.014  Score=51.39  Aligned_cols=190  Identities=14%  Similarity=0.097  Sum_probs=102.9

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce--eEEEe----cCCceeEEEEecC----ceEEE--ec-----
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC--IGELS----FRSEVRSVKLRRD----RIIVV--LE-----  193 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~--~~~~~----~~~~i~~~~~~~~----~~~~~--~d-----  193 (403)
                      ....++|.+++.++++.. .     +.|++++  +++.  +..+.    .......|+++|+    +.+.+  ..     
T Consensus        32 ~P~~ia~~pdG~l~V~e~-~-----g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAER-P-----GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CEEEEEECTTSCEEEEET-T-----TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CceEEEEcCCCeEEEEeC-C-----CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            456888999988766643 3     8899988  4432  22221    2456889999998    44444  21     


Q ss_pred             -CeEEEEEcCCce-----e-eeEee---ccCCCceeEEEeeCCCeEEEEeeCC------------ccCeEEEEEccCC--
Q 015650          194 -QKIFVYNFADLK-----L-LHQIE---TIANPKGLCAVSQGVGSLVLVCPGL------------QKGQVRVEHYASK--  249 (403)
Q Consensus       194 -~~i~i~d~~~~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~------------~d~~i~v~d~~~~--  249 (403)
                       +.|..|+...+.     . +..+.   ...+....+++.+++ .+|++. |.            ..+.|.-++.+..  
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~-G~~~~~~~~~d~~~~~g~I~ri~~dG~~p  181 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTT-GEVYERELAQDLASLGGKILRLTPEGEPA  181 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEEC-CCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEE-CCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence             678888876431     1 11132   111233578999988 566554 31            1256666665541  


Q ss_pred             -----------ceeEE-eecCCceEEEEEcC-CCCEEEEEeCCCcEE------EEEEcCCCc------------------
Q 015650          250 -----------RTKFI-MAHDSRIACFALTQ-DGQLLATSSTKGTLV------RIFNTLDGT------------------  292 (403)
Q Consensus       250 -----------~~~~~-~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i------~iwd~~~~~------------------  292 (403)
                                 ....+ .++ .....++|+| +|.++++-..... +      .|.-+..+.                  
T Consensus       182 ~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~-~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          182 PGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSG-EQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             TTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC-------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCC-CCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                       11122 233 2357789999 6665554332222 2      122222221                  


Q ss_pred             EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       293 ~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ++..+.   +......++| .+|.++++.-..+.|...+++...
T Consensus       260 p~~~~~---~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~  299 (352)
T 2ism_A          260 PLYFWP---QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGER  299 (352)
T ss_dssp             CSEECT---TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEET
T ss_pred             CeEecC---CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCC
Confidence            111121   1234567777 567666666566778777777554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.81  E-value=0.011  Score=51.86  Aligned_cols=199  Identities=7%  Similarity=0.058  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCEEEEE-------------cCCcEEEEEcCCCe-eEEEEeccc----CcceeEEEEeeeC--Ce--EEEee
Q 015650           89 LHISFNQDHGCFAAG-------------TDHGFRIYNCDPFR-EIFRRDFER----GGGIGVVEMLFRC--NI--LALVG  146 (403)
Q Consensus        89 ~~i~~s~d~~~l~~~-------------~~~~i~iw~~~~~~-~~~~~~~~~----~~~~~v~~~~~~~--~~--~~~~s  146 (403)
                      -.|++.|+|..++++             .++.|.++|.++.. ......+.+    ........+.+..  ++  ..++.
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            345677888766665             23449999986321 111122221    1223455555533  22  23333


Q ss_pred             -CCC-CCCCCCceEEEEECCCC-ce---eEEEec--CCceeEEEEecCceEEEe------c--------------CeEEE
Q 015650          147 -GGP-DPQYPLNKVMIWDDHQS-RC---IGELSF--RSEVRSVKLRRDRIIVVL------E--------------QKIFV  198 (403)
Q Consensus       147 -~~~-d~~~~~~~i~iwd~~~~-~~---~~~~~~--~~~i~~~~~~~~~~~~~~------d--------------~~i~i  198 (403)
                       ... +     ..|.+|++..+ ..   +..+.+  -...+++.+.++|.+.+.      |              +.|+.
T Consensus       133 nh~~~~-----s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          133 NHPGSS-----STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             ECSTTC-----CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             ECCCCC-----CeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence             321 3     67888877654 22   223332  345789999999987662      1              34555


Q ss_pred             EEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-Cce---eEEeecCCceEEEEEcC-CCCEE
Q 015650          199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQ-DGQLL  273 (403)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~---~~~~~~~~~i~~~~~sp-~g~~l  273 (403)
                      +|.  ++ +..+...-..-..++++|+++.+|++-  +..+.|..|++.. +.+   +.+ ...+....+++++ +|++.
T Consensus       208 ~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvad--t~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          208 YSP--ND-VRVVAEGFDFANGINISPDGKYVYIAE--LLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             ECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred             EEC--Ce-EEEeecCCcccCcceECCCCCEEEEEe--CCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence            554  33 222222233447799999999888875  3468899999864 222   223 3356678899999 59887


Q ss_pred             EEEeCCCcEEEEEEcC--CCcEEEEEe
Q 015650          274 ATSSTKGTLVRIFNTL--DGTLLQEVR  298 (403)
Q Consensus       274 ~s~~~dg~~i~iwd~~--~~~~~~~~~  298 (403)
                      +++..++..|..|+-.  .+..+..+.
T Consensus       282 va~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          282 VGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEecCCceEEEEECCCCCCCCEEEEEE
Confidence            7666554214444433  244444444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.77  E-value=0.016  Score=50.28  Aligned_cols=178  Identities=13%  Similarity=0.185  Sum_probs=105.4

Q ss_pred             CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe--------EEEeeCCC--CCCCCCceEEEEECC--CCceeEEE
Q 015650          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--------LALVGGGP--DPQYPLNKVMIWDDH--QSRCIGEL  172 (403)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~s~~~--d~~~~~~~i~iwd~~--~~~~~~~~  172 (403)
                      .+++.+||+ .++.+  ..+. .  ..+..+...++.        +.+++...  +     ++|.+|++.  +++ +..+
T Consensus        49 ~~gL~Vydl-~G~~l--~~~~-~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~-----n~l~vf~iDp~~~~-l~~i  116 (355)
T 3amr_A           49 KSGLVVYSL-DGKML--HSYN-T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGK-----NTIEIYAIDGKNGT-LQSM  116 (355)
T ss_dssp             TTEEEEEET-TSCEE--EEEC-C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTC-----CEEEEEEECTTTCC-EEEC
T ss_pred             CCCEEEEcC-CCcEE--EEcc-C--CCcccEEEecccccCCceEeEEEEeCCCCCC-----CeEEEEEECCCCCc-eeec
Confidence            556999999 44544  3343 1  223333333322        34556555  5     799999773  333 4444


Q ss_pred             e-------cC-CceeEEEE--ecC-ce-EEE---ecCeEEEEEcC-------CceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          173 S-------FR-SEVRSVKL--RRD-RI-IVV---LEQKIFVYNFA-------DLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       173 ~-------~~-~~i~~~~~--~~~-~~-~~~---~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      .       .. ..+..+++  ++. +. +++   -++.+..|++.       +.+.+++|... ..+..|.+.+....+|
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLY  195 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEE
Confidence            2       11 55677887  663 43 333   37888888883       34667777653 4567788887777776


Q ss_pred             EEeeCCccCeEEEEEccC-----CceeEEee--c-CCceEEEEE--cCCCC-EEEEEe-CCCcEEEEEEcC-CCcEEEEE
Q 015650          231 LVCPGLQKGQVRVEHYAS-----KRTKFIMA--H-DSRIACFAL--TQDGQ-LLATSS-TKGTLVRIFNTL-DGTLLQEV  297 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~-----~~~~~~~~--~-~~~i~~~~~--sp~g~-~l~s~~-~dg~~i~iwd~~-~~~~~~~~  297 (403)
                      ++-   ++.-|..++.+-     ..+....+  + ...+..|++  .++++ ||++++ .+.. +.|||.. +.+.+..|
T Consensus       196 v~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s-~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          196 IAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS-YAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE-EEEEESSTTCCEEEEE
T ss_pred             Eec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE-EEEEECCCCCcEEEEE
Confidence            653   555555555432     11221211  1 236788888  45666 676666 4556 9999996 67888888


Q ss_pred             ec
Q 015650          298 RR  299 (403)
Q Consensus       298 ~~  299 (403)
                      ..
T Consensus       272 ~I  273 (355)
T 3amr_A          272 RI  273 (355)
T ss_dssp             EE
T ss_pred             Ee
Confidence            63

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.75  E-value=0.017  Score=50.24  Aligned_cols=234  Identities=12%  Similarity=0.098  Sum_probs=121.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecc-cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ...+.+|.|.+++..+++|..+.| +...+.++.-....+. ......+..+.+.++..+++ + ..     +.|.. ..
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~-g-~~-----g~i~~-S~  105 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIV-G-EP-----PIMLH-TT  105 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEE-E-ET-----TEEEE-ES
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEE-E-CC-----CeEEE-EC
Confidence            347999999888888887765544 3333333221111121 01245678888887554443 3 22     54443 22


Q ss_pred             CCCceeEEEe----cCCceeEEEEecCceEEE-e-cCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          164 HQSRCIGELS----FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       164 ~~~~~~~~~~----~~~~i~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      ..|+.-..+.    +...+..+.+.+++.+++ . ++.|+. ....|+.-..+ ......+..+.+.+++.  +++. + 
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~--~~~~-g-  180 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE--YVAV-S-  180 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC--EEEE-E-
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc--EEEE-E-
Confidence            3344333322    234577788777776655 3 444432 11223322222 12233455666666543  3343 2 


Q ss_pred             ccCeEEE-EEccCCceeEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC--CCcccEEEEEeC
Q 015650          237 QKGQVRV-EHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG--ADRAEIYSLAFS  312 (403)
Q Consensus       237 ~d~~i~v-~d~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~s  312 (403)
                      ..+.+.. .|-....-..+ ......+..+.+.+++++++ ++.+|. +++.+...++.-..+...  .....+.++.+.
T Consensus       181 ~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          181 SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCce-EEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            3344433 33212222222 23456788999999987664 456777 777643224433333221  122358899999


Q ss_pred             CCCCEEEEEeCCCcEEEEEeecCC
Q 015650          313 SNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +++.+++++. +|.| ++..+.++
T Consensus       259 ~~~~~~~~g~-~g~i-~~S~DgG~  280 (327)
T 2xbg_A          259 TPNEVWLAGG-AGAL-LCSQDGGQ  280 (327)
T ss_dssp             SSSCEEEEES-TTCE-EEESSTTS
T ss_pred             CCCEEEEEeC-CCeE-EEeCCCCc
Confidence            8887777654 6666 33344443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.74  E-value=0.041  Score=54.02  Aligned_cols=230  Identities=13%  Similarity=0.150  Sum_probs=131.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~  164 (403)
                      ...|++|.-..+|.+- .|+.+|+..||-...+..  ..........|.++....++...++..       .-+..||..
T Consensus        21 ~n~V~~I~qD~~G~lW-igT~~GL~ryDG~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigT~-------~Gl~~yd~~   90 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIW-IGSNKGLFSYDGYSTQQH--FTYGENNNTRIYCGVIIDNTYLYMGTD-------NGILVYNYR   90 (758)
T ss_dssp             CCCEEEEEECTTSCEE-EEESSCEEEECSSCEEEC--SCTTSTTSSCEEEEEEETTTEEEEEET-------TEEEEEETT
T ss_pred             cceEEEEEECCCCCEE-EEECCCccccCCCceEEE--EccCCCCCceEEEEEEcCCCcEEEEeC-------CCeEEEeCC
Confidence            5679999888887654 455778888873221111  111111234677877777765555443       347899987


Q ss_pred             CCceeEEEe-cCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeec-----cCCCceeEEEeeCCCeEEEEeeCCcc
Q 015650          165 QSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET-----IANPKGLCAVSQGVGSLVLVCPGLQK  238 (403)
Q Consensus       165 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (403)
                      +.+...... ....|.++.......++++.+.+..||..+++.. .+..     ....+..+....+ ..+++++   . 
T Consensus        91 ~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~-g~lWigt---~-  164 (758)
T 3ott_A           91 ADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKD-NQIYVGT---Y-  164 (758)
T ss_dssp             TTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTT-CCEEEEE---T-
T ss_pred             CCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCC-CCEEEEe---C-
Confidence            764322111 2335666665433344456778999998765432 2311     1122333333332 3445543   2 


Q ss_pred             CeEEEEEccCCceeEEeec------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          239 GQVRVEHYASKRTKFIMAH------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       239 ~~i~v~d~~~~~~~~~~~~------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                      +-+..++..++....+...      ...|.++....++..|..|+. +. |..+|..+++... +... ....|.++...
T Consensus       165 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G-l~~~~~~~~~~~~-~~~l-~~~~i~~i~~d  240 (758)
T 3ott_A          165 NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY-LFQYFPSTGQIKQ-TEAF-HNNSIKSLALD  240 (758)
T ss_dssp             TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE-EEEEETTTTEEEE-EEEE-EEEEEEEEEEC
T ss_pred             CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC-CeEEcCCCCeEEe-ccCC-CCCeEEEEEEc
Confidence            3477788776655443211      224888888877776666664 45 8999987765432 2211 23468899988


Q ss_pred             CCCCEEEEEeCCCcEEEEEeecCC
Q 015650          313 SNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       313 ~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      .+|.+.+.. .+ -|.+++..+.+
T Consensus       241 ~~g~lWigT-~~-Gl~~~~~~~~~  262 (758)
T 3ott_A          241 GNGDLLAGT-DN-GLYVYHNDTTP  262 (758)
T ss_dssp             TTCCEEEEE-TT-EEEEECCTTSC
T ss_pred             CCCCEEEEe-CC-ceeEEecCCCc
Confidence            888776544 44 47777766543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.71  E-value=0.022  Score=50.18  Aligned_cols=228  Identities=11%  Similarity=0.053  Sum_probs=119.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecc--cCcceeEEEEeeeCC-----eEEEeeCCCCCCCCCce
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN-----ILALVGGGPDPQYPLNK  157 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-----~~~~~s~~~d~~~~~~~  157 (403)
                      -.....|+|.|||+++++-..+.|++++  .++......+.  .........++++++     .++++...... -..+.
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~-~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG-GLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT-SSEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC-CCccE
Confidence            4457899999999977776666688887  33322222221  123456788999997     34443332100 00045


Q ss_pred             EEEEECCCCce-----e-EEEec-C---CceeEEEEecCceEEEec----------------CeEEEEEcCCc-------
Q 015650          158 VMIWDDHQSRC-----I-GELSF-R---SEVRSVKLRRDRIIVVLE----------------QKIFVYNFADL-------  204 (403)
Q Consensus       158 i~iwd~~~~~~-----~-~~~~~-~---~~i~~~~~~~~~~~~~~d----------------~~i~i~d~~~~-------  204 (403)
                      |..|+...+..     + ..+.. .   .....++|.|||.+.+++                +.|..++....       
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            77777664321     1 11221 1   234689999999877743                35666664320       


Q ss_pred             -----eeeeEee-ccCCCceeEEEeeCCCeEEEEeeCCccC-------eEEEEEccC-----------------CceeEE
Q 015650          205 -----KLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKG-------QVRVEHYAS-----------------KRTKFI  254 (403)
Q Consensus       205 -----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~-------~i~v~d~~~-----------------~~~~~~  254 (403)
                           .....+. ++. ....++++++...++++-.| .+.       .|.+.....                 .....+
T Consensus       187 ~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          187 LGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                 1111111 121 12457788855566666544 222       233322111                 011111


Q ss_pred             eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE------EEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL------LQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       255 ~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~------~~~~~~~~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                       .+......++| .+|.++++.-..+. |...++.....      ...+..  ....+..+++.|||.++++..
T Consensus       265 -~~~~ap~G~~~-~~G~l~v~~~~~~~-v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 -PQGFPPGNLAF-FRGDLYVAGLRGQA-LLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -TTCCCEEEEEE-ETTEEEEEETTTTE-EEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCCCcceEE-ECCEEEEEECCCCE-EEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence             22234567777 46766655555555 77777654321      122222  225789999999998766654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.69  E-value=0.04  Score=52.57  Aligned_cols=224  Identities=7%  Similarity=-0.021  Sum_probs=130.4

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCC
Q 015650           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS  176 (403)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~  176 (403)
                      +|+.+....|+..+++...... ..+....-....++.|.+ ++..+++....     +.|+.+++........+. .-.
T Consensus       319 ~Ll~~~~~~i~~i~l~~~~~~~-~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~v~~~~~~  392 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTPDFTD-IVLQLEDIRHAIAIDYDPVEGYIYWTDDEV-----RAIRRSFIDGSGSQFVVTAQIA  392 (619)
T ss_dssp             EEEEEESSCEEEEESSSTTCCC-EECCCSCCSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEEcccceEEEecCCCccce-eEEeccccCccEEEEEEcCCCeEEEEeCCC-----CeEEEEEcCCCccEEEEECCCC
Confidence            5666666667777776543211 111112334577888886 44444444444     789999876544333333 235


Q ss_pred             ceeEEEEec-CceEEEe---cCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650          177 EVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (403)
Q Consensus       177 ~i~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~  251 (403)
                      ....+++.. .+.+..+   .+.|.+.++... ....+ ......-..+++.|....+|++-.| ....|...+++....
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g-~~~~I~r~~~dG~~~  470 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDWG-EIPKIERAALDGSDR  470 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecCC-CCCEEEEEccCCCcc
Confidence            677899986 4444443   568999998644 33333 2233445778999887777766434 346788888877554


Q ss_pred             eEEe-ecCCceEEEEEcCCCCEEEEEeCC-CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE-eCCCcEE
Q 015650          252 KFIM-AHDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDKGTVH  328 (403)
Q Consensus       252 ~~~~-~~~~~i~~~~~sp~g~~l~s~~~d-g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~-~~dg~v~  328 (403)
                      ..+. ..-.....|++++++..|+.+... +. |..+++..... +.+... ......+|+...+  +|+.+ ...+.|.
T Consensus       471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~-I~~~~~dG~~~-~~~~~~-~l~~P~glav~~~--~ly~tD~~~~~I~  545 (619)
T 3s94_A          471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK-IEVMNTDGTGR-RVLVED-KIPHIFGFTLLGD--YVYWTDWQRRSIE  545 (619)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEESSSCCC-EEEEEC-CCCSSCCEEEETT--EEEEECTTSSCEE
T ss_pred             EEEEeCCCCCCeeeEEcccCCEEEEEECCCCE-EEEEecCCCce-EEEecc-CCCCcEEEEEECC--EEEEeecCCCeEE
Confidence            4443 334567899999977777766554 55 88998754332 333211 1122335555433  44444 3556677


Q ss_pred             EEEeecC
Q 015650          329 VFNLKVN  335 (403)
Q Consensus       329 iwd~~~~  335 (403)
                      ..|..++
T Consensus       546 ~~~k~~g  552 (619)
T 3s94_A          546 RVHKRSA  552 (619)
T ss_dssp             EEESSSC
T ss_pred             EEEcCCC
Confidence            7776666

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.69  E-value=0.02  Score=49.08  Aligned_cols=230  Identities=11%  Similarity=0.084  Sum_probs=112.0

Q ss_pred             CCCEEEEEc-C------CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-
Q 015650           96 DHGCFAAGT-D------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-  167 (403)
Q Consensus        96 d~~~l~~~~-~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-  167 (403)
                      ++.+++.|+ .      +.+.+||..+.+-.....+. ..... .++....+.++++++... ......+.+||..+++ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~l~v~GG~~~-~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT-RKRRY-VASVSLHDRIYVIGGYDG-RSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCS-SCCBS-CEEEEETTEEEEECCBCS-SCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC-hhhcc-ccEEEECCEEEEEcCCCC-CccCceEEEEECCCCCC
Confidence            455666665 2      23888888776544323332 11111 122223445555544321 1112579999988776 


Q ss_pred             --eeEEEe--cCCceeEEEEecCceEEEe--------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          168 --CIGELS--FRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       168 --~~~~~~--~~~~i~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                        -...-.  ....-.+++.. ++.+++.        ...+.+||+.+.+-...-..........+... ++.+++. .|
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~-GG  167 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCL-GG  167 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEE-CC
T ss_pred             CeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEE-CC
Confidence              322211  11112223333 4444442        23689999887543322111111112222222 3444444 34


Q ss_pred             Cc----cCeEEEEEccCCceeEEeecC---CceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcCCCcEEEEEecCCCc
Q 015650          236 LQ----KGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       236 ~~----d~~i~v~d~~~~~~~~~~~~~---~~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                      ..    ...+.+||+.+..-..+....   .....+.+  ++++++.|+.+     .. +.+||+.+.+-...-......
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~r  244 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTTVTSMTTPR  244 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCcEEECCCCCCcc
Confidence            22    256889998886655543211   11222333  67777777764     35 899999877654322111111


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCC-----cEEEEEeecCC
Q 015650          304 AEIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS  336 (403)
Q Consensus       304 ~~v~~l~~s~d~~~l~s~~~dg-----~v~iwd~~~~~  336 (403)
                      .....+.+  ++++++.|+.++     .|.+||+++.+
T Consensus       245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            11222333  677777777553     46667766543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.67  E-value=0.017  Score=49.60  Aligned_cols=149  Identities=5%  Similarity=0.046  Sum_probs=95.9

Q ss_pred             EEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEE-Eec-------CCceeEEEE---ecCceEEE-e--------
Q 015650          134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LSF-------RSEVRSVKL---RRDRIIVV-L--------  192 (403)
Q Consensus       134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~-~~~-------~~~i~~~~~---~~~~~~~~-~--------  192 (403)
                      +..|.. ++.++++.-..     +.|..|+...+..... +..       ...+..+.|   .+++++++ .        
T Consensus        17 ~~~wd~~~g~~~vs~l~~-----g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYK-----GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CEEEETTTTEEEEEETTT-----TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             CccCcCCCCEEEEEeccC-----CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            456655 56667776566     8999999876544333 212       113578999   58887776 3        


Q ss_pred             -------cCeEEEEEcC---CceeeeEeecc--C-----------CCceeEEEeeCCCeEEEEeeCCcc-CeEEEEEccC
Q 015650          193 -------EQKIFVYNFA---DLKLLHQIETI--A-----------NPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYAS  248 (403)
Q Consensus       193 -------d~~i~i~d~~---~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~g~~d-~~i~v~d~~~  248 (403)
                             +..|..||+.   +++.+......  .           .....+++.++++-. +.  ++.. +.|..++...
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaY-Vt--~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSY-VA--FALGMPAIARVSADG  168 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEE-EE--EEESSCEEEEECTTS
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEE-Ee--CCCCCCeEEEEeCCC
Confidence                   3679999999   78776655311  1           124567777776632 22  2244 6666666666


Q ss_pred             CceeEEeec------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 015650          249 KRTKFIMAH------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (403)
Q Consensus       249 ~~~~~~~~~------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~  291 (403)
                      +....+...      ....+.|+++|+|+.|++....+. |..+|+.+.
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~p  216 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKP  216 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSS
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCC
Confidence            544433211      223679999999999988877888 999998753

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.61  E-value=0.0052  Score=54.52  Aligned_cols=112  Identities=13%  Similarity=0.130  Sum_probs=78.2

Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeec----CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc-
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-  292 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~----~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~-  292 (403)
                      ......++..++++    .++.||.-++.. ...+.+...    -..|..+..+|+|++||..+.. . |.|-.+..+. 
T Consensus        25 ~~~~~~n~t~i~~a----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~-V~Vv~LP~~~~   98 (452)
T 3pbp_A           25 YIFSSQNGTRIVFI----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-E-IFVMEVPWGYS   98 (452)
T ss_dssp             EEEEETTTTEEEEE----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-E-EEEEECCTTCS
T ss_pred             EEEEEcCCCEEEEE----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-e-EEEEEecCccc
Confidence            34455666666665    457888888773 444444432    2368889999999999988765 4 8998887321 


Q ss_pred             -----------EEEEEecCC----CcccEEEEEeCCC---CCEEEEEeCCCcEEEEEeecCC
Q 015650          293 -----------LLQEVRRGA----DRAEIYSLAFSSN---AQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       293 -----------~~~~~~~~~----~~~~v~~l~~s~d---~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                                 ..+.+..+.    ...+|..+.|+|-   +..|++-..|+.|++||+....
T Consensus        99 ~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~  160 (452)
T 3pbp_A           99 NVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ  160 (452)
T ss_dssp             CCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred             cCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence                       123444321    2367999999995   4589999999999999999844

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.59  E-value=0.0064  Score=52.29  Aligned_cols=151  Identities=10%  Similarity=0.070  Sum_probs=93.7

Q ss_pred             eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe-ec-------CCceEEEEE---cCCCCEEEEEeC--------
Q 015650          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AH-------DSRIACFAL---TQDGQLLATSST--------  278 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~-~~-------~~~i~~~~~---sp~g~~l~s~~~--------  278 (403)
                      ..+.|......+++..  ...+.|..||...+....+. ..       ...+..|.|   .|+++++++...        
T Consensus        16 E~~~wd~~~g~~~vs~--l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSN--LYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             SCEEEETTTTEEEEEE--TTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             cCccCcCCCCEEEEEe--ccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            4677777666655543  46799999998865443332 11       113579999   689888775431        


Q ss_pred             -----CCcEEEEEEcC---CCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEeCC-CcEEEEEeecCCCC
Q 015650          279 -----KGTLVRIFNTL---DGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDK-GTVHVFNLKVNSGS  338 (403)
Q Consensus       279 -----dg~~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~l~~s~d~~~l~s~~~d-g~v~iwd~~~~~~~  338 (403)
                           +.. |..||+.   +++.+.......           .......|+..++|+..++++.. +.  ||.++.....
T Consensus        94 ~~~~g~~~-v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~~  170 (334)
T 2p9w_A           94 QSSHGASS-FHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGKT  170 (334)
T ss_dssp             CCSSSCCE-EEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSCC
T ss_pred             cccCCCCE-EEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCCE
Confidence                 566 9999998   787766554210           01258899999999998888876 66  4454443310


Q ss_pred             CCCCCCCCCCCCCcccccccccccccceeeeeeeeEE-EEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ-FRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      .                             ..|.... .....--.+.++++|||+.|++...+|
T Consensus       171 ~-----------------------------~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g  206 (334)
T 2p9w_A          171 V-----------------------------STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR  206 (334)
T ss_dssp             E-----------------------------EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSS
T ss_pred             E-----------------------------eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCC
Confidence            0                             0110000 000011366899999999999886644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.59  E-value=0.003  Score=64.38  Aligned_cols=219  Identities=11%  Similarity=0.131  Sum_probs=133.6

Q ss_pred             cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecC
Q 015650          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (403)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~  186 (403)
                      .|.|.|+........+.+.  ..    +...+|....++--. .     .++.|||+++.+.++.+....+|.-=.|-.+
T Consensus        49 ~vvIidl~~~~~~~rrpi~--Ad----sAIMnP~~~iiALra-g-----~~lQiFnl~~k~klks~~~~e~VvfWkWis~  116 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPIRRPIS--AD----SAIMNPASKVIALKA-G-----KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  116 (1630)
T ss_pred             eEEEEECCCCCCccccccc--ch----hhccCCCcceEEEec-C-----CeEEEeehHHhhhhcccccCCCceEEEecCC
Confidence            3888898776655433333  11    122333333333322 2     7999999999999998887777777777665


Q ss_pred             ceE-EEecCeEEEEEcCC-ceeeeEeeccC--CCceeEEE--eeCCCeEEEEee----CCccCeEEEEEccCCceeEEee
Q 015650          187 RII-VVLEQKIFVYNFAD-LKLLHQIETIA--NPKGLCAV--SQGVGSLVLVCP----GLQKGQVRVEHYASKRTKFIMA  256 (403)
Q Consensus       187 ~~~-~~~d~~i~i~d~~~-~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~----g~~d~~i~v~d~~~~~~~~~~~  256 (403)
                      ..+ ++++..|+.|++.. ..+.+.+..|.  ....++.+  +++.+.++++.-    |.-.|.+.+|..+.+..+.+.+
T Consensus       117 ~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ieg  196 (1630)
T 1xi4_A          117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (1630)
T ss_pred             CeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhH
Confidence            554 45899999999964 23444443331  12334444  444444433321    2345889999999888888888


Q ss_pred             cCCceEEEEEc--C-CCCEEEEEeC---CCcEEEEEEcCCC---cE------EEE-EecCCCcccEEEEEeCCCCCEEEE
Q 015650          257 HDSRIACFALT--Q-DGQLLATSST---KGTLVRIFNTLDG---TL------LQE-VRRGADRAEIYSLAFSSNAQWLAV  320 (403)
Q Consensus       257 ~~~~i~~~~~s--p-~g~~l~s~~~---dg~~i~iwd~~~~---~~------~~~-~~~~~~~~~v~~l~~s~d~~~l~s  320 (403)
                      |......+.+.  + ...+++.+..   .+. ++|-++...   ..      +.. +.......-..++..++....+..
T Consensus       197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~  275 (1630)
T 1xi4_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (1630)
T ss_pred             hHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence            87766555443  1 2234443332   245 888887432   11      000 111001123456778888888888


Q ss_pred             EeCCCcEEEEEeecCCCC
Q 015650          321 SSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       321 ~~~dg~v~iwd~~~~~~~  338 (403)
                      .+.-|.|++||+.++..+
T Consensus       276 itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          276 ITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EecCceEEEEecccchhh
Confidence            899999999999999864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.59  E-value=0.0025  Score=64.92  Aligned_cols=231  Identities=13%  Similarity=0.154  Sum_probs=143.2

Q ss_pred             EEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEee-eCCeEEEeeCCCCCCCCCceEEEEECCC-Ccee
Q 015650           92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCI  169 (403)
Q Consensus        92 ~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~i~iwd~~~-~~~~  169 (403)
                      -.+|..+.+|.-....+.||++++........+    ...|.-+.| +++.+.+++.        ..|+-|++.. ..++
T Consensus        72 IMnP~~~iiALrag~~lQiFnl~~k~klks~~~----~e~VvfWkWis~~~l~lVT~--------~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           72 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQPV  139 (1630)
T ss_pred             ccCCCcceEEEecCCeEEEeehHHhhhhccccc----CCCceEEEecCCCeeEEEcC--------CeEEEeccCCCCccH
Confidence            357777777777666699999998877643333    356888888 5567777776        6899999964 3455


Q ss_pred             EEEe-c----CCceeEEEEecCceEEE----------ecCeEEEEEcCCceeeeEeeccCCCceeEEEee--CCCeEE-E
Q 015650          170 GELS-F----RSEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ--GVGSLV-L  231 (403)
Q Consensus       170 ~~~~-~----~~~i~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~  231 (403)
                      +.+. |    ...|..-..+++.++++          ..|.+.+|..+.+ .-+.+++|......+.+.-  .+..++ +
T Consensus       140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEE
Confidence            5554 3    45677777888888777          1578899987653 3344555554433333321  111111 1


Q ss_pred             EeeCCccCeEEEEEccCC-----ce-----eEEee---cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          232 VCPGLQKGQVRVEHYASK-----RT-----KFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~-----~~-----~~~~~---~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      +.-....+.++|.++...     ..     .....   ...-..++..++.-..++.-+.-|. |.++|+.++.++..-+
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhhcc
Confidence            111112368888887542     11     01111   1233456777887778888889999 9999999999886555


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       299 ~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      .  ....|...+-.....-++.....|.|.--.++..+-+
T Consensus       298 i--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          298 I--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             c--cCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            3  2345554444444344445557887777777766643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.50  E-value=0.038  Score=47.32  Aligned_cols=230  Identities=15%  Similarity=0.164  Sum_probs=110.5

Q ss_pred             CCEEEEEc-C----CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEE
Q 015650           97 HGCFAAGT-D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (403)
Q Consensus        97 ~~~l~~~~-~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~  171 (403)
                      +.+++.|+ +    +.+.+||..+.+-.....+. ..... .++....+.+++++|... ......+.+||..+.+-...
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELP-SRRCR-AGMVYMAGLVFAVGGFNG-SLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCS-SCCBS-CEEEEETTEEEEESCBCS-SSBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCC-ccccc-ceEEEECCEEEEEeCcCC-CccccceEEECCCCCceeeC
Confidence            45556665 2    23888888776544333332 11111 122223445555544321 11125688999887653322


Q ss_pred             Ee--cCCceeEEEEecCceEEE--ec-----CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc-----
Q 015650          172 LS--FRSEVRSVKLRRDRIIVV--LE-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ-----  237 (403)
Q Consensus       172 ~~--~~~~i~~~~~~~~~~~~~--~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----  237 (403)
                      -.  ....-.+++...+..+++  .+     ..+.+||+.+.+-...-..........+... ++.++++ .|..     
T Consensus        93 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~-GG~~~~~~~  170 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAV-GGYDVASRQ  170 (302)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE-CCEETTTTE
T ss_pred             CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEE-eCCCCCCCc
Confidence            22  111122333333333443  12     3688999887543222111111111122222 3444444 3421     


Q ss_pred             -cCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCC-----cEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          238 -KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       238 -d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                       ...+.+||+.+..-..+...   ......+.+  ++++++.|+.++     . +.+||..+.+-...-...........
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~~~~r~~~~~  247 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWRQVADMNMCRRNAGV  247 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCCEeeCCCCCCccccCeE
Confidence             24588899887665544321   111222233  677778877643     5 89999987654332211101111122


Q ss_pred             EEeCCCCCEEEEEeCCC-----cEEEEEeecCC
Q 015650          309 LAFSSNAQWLAVSSDKG-----TVHVFNLKVNS  336 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg-----~v~iwd~~~~~  336 (403)
                      +.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       248 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          248 CAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            222  677777777553     47888877654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.49  E-value=0.0086  Score=54.90  Aligned_cols=154  Identities=10%  Similarity=0.077  Sum_probs=93.1

Q ss_pred             eeEEEEecC--ceEEE-e--cCeEEEEEcCCceeeeEeeccC---CCceeEEE-------eeCCCeEEEEeeCC----cc
Q 015650          178 VRSVKLRRD--RIIVV-L--EQKIFVYNFADLKLLHQIETIA---NPKGLCAV-------SQGVGSLVLVCPGL----QK  238 (403)
Q Consensus       178 i~~~~~~~~--~~~~~-~--d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~g~----~d  238 (403)
                      ...|+|.|.  +.+++ .  .+.|++.|+.++.....+....   .....++|       +++++.++++....    ..
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            568899983  44444 3  3579999988766554443321   23467888       88988777765321    11


Q ss_pred             CeEEEEEccC-Cce------eEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcC-------CCcE----------
Q 015650          239 GQVRVEHYAS-KRT------KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTL-------DGTL----------  293 (403)
Q Consensus       239 ~~i~v~d~~~-~~~------~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~-------~~~~----------  293 (403)
                      ..|.+++... +..      ..+.. ......++++|+ +.++++-..++. |..+|+.       ++..          
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~-V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQ-VFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTE-EEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCE-EEEEecccccccccCceeeccccccccc
Confidence            2366665333 122      22322 234567889995 555555556777 9999987       5543          


Q ss_pred             -EEE-EecCCCcccEEEEEeCCCCCEEEEE-eCCCcEEEEEeec
Q 015650          294 -LQE-VRRGADRAEIYSLAFSSNAQWLAVS-SDKGTVHVFNLKV  334 (403)
Q Consensus       294 -~~~-~~~~~~~~~v~~l~~s~d~~~l~s~-~~dg~v~iwd~~~  334 (403)
                       ... +... .......|+|+|+|++|..+ +....|+.++++.
T Consensus       299 ~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          299 TFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence             222 2221 23456899999999965555 4667888877654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.48  E-value=0.048  Score=48.03  Aligned_cols=232  Identities=9%  Similarity=0.012  Sum_probs=122.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecc--cCcceeEEEEeeeCC----eEEEeeCCC--CCCCCCc
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN----ILALVGGGP--DPQYPLN  156 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~~~s~~~--d~~~~~~  156 (403)
                      -.....|+|.|||+++++-..+.|++++. .++ .....+.  .........++++++    +.+.++...  ...-..+
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            45678999999999777766766888863 333 2212221  123356788999986    444443321  0000003


Q ss_pred             eEEEEECCCC--c-----ee-EEEe--cCCceeEEEEecCceEEEec----------------CeEEEEEcCCce-----
Q 015650          157 KVMIWDDHQS--R-----CI-GELS--FRSEVRSVKLRRDRIIVVLE----------------QKIFVYNFADLK-----  205 (403)
Q Consensus       157 ~i~iwd~~~~--~-----~~-~~~~--~~~~i~~~~~~~~~~~~~~d----------------~~i~i~d~~~~~-----  205 (403)
                      .|..|+...+  .     .+ ..+.  .......+.|.|||.+.++.                +.|..++.. ++     
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCC
Confidence            5666665543  1     11 1122  11235679999999877742                356555543 32     


Q ss_pred             ---eeeEe-eccCCCceeEEEeeCCCeEEEEeeCCcc-CeEEEEEccC-----------------CceeEEeecCCceEE
Q 015650          206 ---LLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYAS-----------------KRTKFIMAHDSRIAC  263 (403)
Q Consensus       206 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~v~d~~~-----------------~~~~~~~~~~~~i~~  263 (403)
                         ....+ .++.+ ..-++|+++...++++-.+... ..|.+.....                 .....+.........
T Consensus       185 pf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          185 PFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             SSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence               01112 12222 3568888855566665434211 1233322100                 011111011235678


Q ss_pred             EEEc-------CCCCEEEEEeCCCcEEEEEEcCCC-cEE--EEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650          264 FALT-------QDGQLLATSSTKGTLVRIFNTLDG-TLL--QEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       264 ~~~s-------p~g~~l~s~~~dg~~i~iwd~~~~-~~~--~~~~~~~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      ++|.       .+|+++++.-..+. |...++... +..  ..+... ....+..+++.|||.++++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence            8883       57777766555666 888888753 332  233211 135789999999998766654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.48  E-value=0.044  Score=47.64  Aligned_cols=227  Identities=10%  Similarity=0.009  Sum_probs=119.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecc-cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      ...+.+|.|.+ +..+++|..+.|.. ..+.++ ....... ......+..+.+..++..++.+..      +.|.. ..
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------g~v~~-S~  148 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKALGNGSAEMITNV------GAIYR-TK  148 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEEEETTEEEEEETT------CCEEE-ES
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCC-CceECccccCCCCCeEEEEEECCCCEEEEeCC------ccEEE-Ec
Confidence            34688999986 55666665543322 223222 2212111 012234566766655555555543      54432 22


Q ss_pred             CCCceeEEEe--cCCceeEEEEecCceEEE--ecCeEEEE-Ec--CCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          164 HQSRCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVY-NF--ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       164 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~d~~i~i~-d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      ..|+.-....  ....+..+.+.+++.+++  .++.++.- |-  .+.+.+.  ......+..+.+.+++. ++++.   
T Consensus       149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~-~~~~~---  222 (327)
T 2xbg_A          149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGR-LWMIV---  222 (327)
T ss_dssp             STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSC-EEEEE---
T ss_pred             CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCC-EEEEe---
Confidence            3344333333  455788999999888777  35555443 31  2222221  12234455666666653 34432   


Q ss_pred             ccCeEEEEEccCCce-eEEe----ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC-CCcccEEEEE
Q 015650          237 QKGQVRVEHYASKRT-KFIM----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLA  310 (403)
Q Consensus       237 ~d~~i~v~d~~~~~~-~~~~----~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~  310 (403)
                      .+|.+++.+.+.+.. ..+.    .+...+.++.+.+++.+++.+ .++. | ++....++.-..+... .....+.++.
T Consensus       223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~-i-~~S~DgG~tW~~~~~~~~~~~~~~~v~  299 (327)
T 2xbg_A          223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGA-L-LCSQDGGQTWQQDVDVKKVPSNFYKIL  299 (327)
T ss_dssp             TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTC-E-EEESSTTSSCEECGGGTTSSSCCCEEE
T ss_pred             CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCe-E-EEeCCCCcccEEcCccCCCCCCeEEEE
Confidence            467777664332221 1111    122358899999888876655 4676 6 4444555544444321 1235678888


Q ss_pred             eCCCCCEEEEEeCCCcEEEEE
Q 015650          311 FSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      |.+++. +++++.+|.|.-++
T Consensus       300 ~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          300 FFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             EEETTE-EEEECSTTEEEEEC
T ss_pred             EECCCc-eEEEcCCceEEEEc
Confidence            875554 56667888766554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.33  E-value=0.07  Score=46.74  Aligned_cols=136  Identities=11%  Similarity=0.109  Sum_probs=79.3

Q ss_pred             cCeEEEEEcCCc-eeeeEeecc-------CCCceeEEEee--CCCeEEEEe-eCCccCeEEEEEccC--CceeEEe---e
Q 015650          193 EQKIFVYNFADL-KLLHQIETI-------ANPKGLCAVSQ--GVGSLVLVC-PGLQKGQVRVEHYAS--KRTKFIM---A  256 (403)
Q Consensus       193 d~~i~i~d~~~~-~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~-~g~~d~~i~v~d~~~--~~~~~~~---~  256 (403)
                      +|.|.++|+.+. .....+...       .-...-+.+..  ++...++++ .+..+..|.+|+++.  +....+.   +
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g  161 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  161 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence            678999998742 112222211       11223455555  344333443 332367888888765  2222222   1


Q ss_pred             c-CCceEEEEEcCCCCEEEEEeC-----------------CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 015650          257 H-DSRIACFALTQDGQLLATSST-----------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (403)
Q Consensus       257 ~-~~~i~~~~~sp~g~~l~s~~~-----------------dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l  318 (403)
                      . -...+.+.+.++|++.++...                 .|. |.-+|.  ++......   .-..-+.|+|+||++.|
T Consensus       162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~-vyr~d~--~~~~~~~~---~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF-VTYYSP--NDVRVVAE---GFDFANGINISPDGKYV  235 (355)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE-EEEECT--TCCEEEEE---EESSEEEEEECTTSSEE
T ss_pred             CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE-EEEEEC--CeEEEeec---CCcccCcceECCCCCEE
Confidence            1 235789999999998776541                 234 555554  43332222   22467899999999988


Q ss_pred             EEEe-CCCcEEEEEeec
Q 015650          319 AVSS-DKGTVHVFNLKV  334 (403)
Q Consensus       319 ~s~~-~dg~v~iwd~~~  334 (403)
                      +.+. ..+.|+.|+++.
T Consensus       236 Yvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEGGGTEEEEEEECT
T ss_pred             EEEeCCCCeEEEEEECC
Confidence            7665 678899999974

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.29  E-value=0.021  Score=50.67  Aligned_cols=136  Identities=16%  Similarity=0.180  Sum_probs=90.7

Q ss_pred             EEEecCeEEEEEcCCceeeeEeecc----CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-------------e
Q 015650          189 IVVLEQKIFVYNFADLKLLHQIETI----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------------T  251 (403)
Q Consensus       189 ~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-------------~  251 (403)
                      +++.++.||.-++......+.++..    ...+..+.++|+|+.+.++  |  +..|.|..+..+.             .
T Consensus        36 ~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~--g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~  111 (452)
T 3pbp_A           36 VFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF--N--DNEIFVMEVPWGYSNVEDVSIQDAFQI  111 (452)
T ss_dssp             EEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE--C--SSEEEEEECCTTCSCCCCHHHHHTTEE
T ss_pred             EEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe--c--CCeEEEEEecCccccCcccccccccce
Confidence            3337889999888755555555543    2256778999998854443  3  5688888877311             1


Q ss_pred             eEEee------cCCceEEEEEcC---CCCEEEEEeCCCcEEEEEEcCCC--cEEEEEec-------CCCcccEEEEEeCC
Q 015650          252 KFIMA------HDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLDG--TLLQEVRR-------GADRAEIYSLAFSS  313 (403)
Q Consensus       252 ~~~~~------~~~~i~~~~~sp---~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~-------~~~~~~v~~l~~s~  313 (403)
                      +.+.-      ...+|..+.|+|   .+..|++-..|+. |++||+...  ++. .+..       ......|.+++|..
T Consensus       112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred             eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence            12221      246799999999   4568999999999 999999752  222 2321       11225789999999


Q ss_pred             CCCEEEEEe--CCCcEEEE
Q 015650          314 NAQWLAVSS--DKGTVHVF  330 (403)
Q Consensus       314 d~~~l~s~~--~dg~v~iw  330 (403)
                      ++-.|...+  ..|.|+-.
T Consensus       190 ~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          190 DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TSSCEEEEECTTSCEEEEE
T ss_pred             CCcEEEEEecCCCCCEEEE
Confidence            887776655  77877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.28  E-value=0.071  Score=45.79  Aligned_cols=232  Identities=12%  Similarity=0.061  Sum_probs=110.3

Q ss_pred             CCCCEEEEEcC-----CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC---CCCCCCceEEEEECCCC
Q 015650           95 QDHGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVMIWDDHQS  166 (403)
Q Consensus        95 ~d~~~l~~~~~-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~~~~~~i~iwd~~~~  166 (403)
                      -++.+++.|+.     +.+.+||..+.+-.....+. ..... .++....+.+++++|..   +.......+.+||..+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQ-VPRSG-LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCS-SCCBS-CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCC-ccccc-ceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            35667777762     23888998776644332232 11111 12223345555555431   10001146888998776


Q ss_pred             ceeEEEe--cCCceeEEEEecCceEEEe--------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650          167 RCIGELS--FRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       167 ~~~~~~~--~~~~i~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (403)
                      +-...-.  ....-.+++.. ++.+++.        -..+.+||+.+.+-...-..........+... ++.+++. .|.
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~-GG~  177 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAV-GGF  177 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEE-CCB
T ss_pred             eEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEE-eCC
Confidence            5332211  11111223333 4444442        24688999887543221111111111122222 3454444 342


Q ss_pred             c----cCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcCCCcEEEEEecCCCcc
Q 015650          237 Q----KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGADRA  304 (403)
Q Consensus       237 ~----d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~~~~~~~~~~~~~  304 (403)
                      .    ...+.+||+.+..-..+...   ......+.+  ++++++.|+.+     .. +.+||+.+.+-...-.......
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~r~  254 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTFVAPMKHRRS  254 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEECCCCSSCCB
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEECCCCCCCcc
Confidence            2    24688899887654443221   111223333  67777777764     45 8999998765433211110111


Q ss_pred             cEEEEEeCCCCCEEEEEeCC-----CcEEEEEeecCC
Q 015650          305 EIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~~~d-----g~v~iwd~~~~~  336 (403)
                      ....+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       255 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          255 ALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1222222  66777777744     346677766543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.25  E-value=0.076  Score=45.49  Aligned_cols=228  Identities=10%  Similarity=0.053  Sum_probs=112.0

Q ss_pred             CCEEEEEcC---CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe
Q 015650           97 HGCFAAGTD---HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (403)
Q Consensus        97 ~~~l~~~~~---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~  173 (403)
                      +.+++.|+.   +.+.+||..+.+-.....+. ..... .++....+.+++++|..  ......+.+||..+++-...-.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPF-EKRRD-AACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCS-CCCBS-CEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCC-cccce-eEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCC
Confidence            345566652   34899998876644333332 11111 12222344555555432  1122678999988875433322


Q ss_pred             --cCCceeEEEEecCceEEE---ec------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc-----
Q 015650          174 --FRSEVRSVKLRRDRIIVV---LE------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ-----  237 (403)
Q Consensus       174 --~~~~i~~~~~~~~~~~~~---~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----  237 (403)
                        ....-..++.. ++.+++   .+      ..+.+||+.+.+-...-..........+... ++.++++ .|..     
T Consensus        88 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~-GG~~~~~~~  164 (306)
T 3ii7_A           88 PPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVC-GGSLGNNVS  164 (306)
T ss_dssp             CSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE-CCEESCTTT
T ss_pred             CCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEE-CCCCCCCCc
Confidence              11111223333 444444   22      3589999887643222111111112222222 3444444 3321     


Q ss_pred             ---cCeEEEEEccCCceeEEeecCC---ceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcCCCcEEEEEecCCCcccE
Q 015650          238 ---KGQVRVEHYASKRTKFIMAHDS---RIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGADRAEI  306 (403)
Q Consensus       238 ---d~~i~v~d~~~~~~~~~~~~~~---~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (403)
                         ...+.+||..+..-..+.....   .-..+.+  ++++++.|+.+     .. +.+||..+.+-...-.........
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~  241 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDN-VEYYDIKLNEWKMVSPMPWKGVTV  241 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCC-EEEEETTTTEEEECCCCSCCBSCC
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCce-EEEeeCCCCcEEECCCCCCCccce
Confidence               3558899998876555432211   1122222  67777777653     34 899999876543221111111122


Q ss_pred             EEEEeCCCCCEEEEEeCC-----CcEEEEEeecCC
Q 015650          307 YSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~d-----g~v~iwd~~~~~  336 (403)
                      ..+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            33333  67788888754     456777776654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.08  E-value=0.13  Score=45.14  Aligned_cols=243  Identities=7%  Similarity=-0.001  Sum_probs=123.1

Q ss_pred             CCeEEEEEcCCCC-EEEEEcCCcEEEEEcCCCeeEEEEec---ccCcceeEEEEeeeCC----eEEEeeCCCCCCC--CC
Q 015650           86 PTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCN----ILALVGGGPDPQY--PL  155 (403)
Q Consensus        86 ~~i~~i~~s~d~~-~l~~~~~~~i~iw~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~----~~~~~s~~~d~~~--~~  155 (403)
                      .....|+|.|+|+ ++++-..+.|++++.+.........+   ..........++++++    +.+.++.......  ..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            4568999999999 77766565588887432111000111   1112345688999874    4444432210000  00


Q ss_pred             ceEEEEECCCC--c--eeEE-Ee-cC------CceeEEEEecCceEEEe--c--------------CeEEEEEcCCce--
Q 015650          156 NKVMIWDDHQS--R--CIGE-LS-FR------SEVRSVKLRRDRIIVVL--E--------------QKIFVYNFADLK--  205 (403)
Q Consensus       156 ~~i~iwd~~~~--~--~~~~-~~-~~------~~i~~~~~~~~~~~~~~--d--------------~~i~i~d~~~~~--  205 (403)
                      ..|..|++..+  +  .... +. ..      .....+.|.|||.+.++  |              +.|.-++.. ++  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCC
Confidence            35666665432  1  1111 11 11      12467999999977774  2              357777754 22  


Q ss_pred             -----------eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-------------------------
Q 015650          206 -----------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-------------------------  249 (403)
Q Consensus       206 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-------------------------  249 (403)
                                 ....+.........++|.+....++++-.+ .++.=.|.-+..+                         
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                       112221111223567788755566655433 2211122111110                         


Q ss_pred             -------ceeEEeecCCceEEEEEcC-------CCCEEEEEeCCCcEEEEEEcCCCcEEEEEec-CCCcccEEEEEeCCC
Q 015650          250 -------RTKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIYSLAFSSN  314 (403)
Q Consensus       250 -------~~~~~~~~~~~i~~~~~sp-------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~s~d  314 (403)
                             ....+ .+......+.|..       +|+++++.-..+. |...++..++....... ......+..|++.||
T Consensus       256 ~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd  333 (353)
T 2g8s_A          256 IVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD  333 (353)
T ss_dssp             SCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred             CCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence                   00111 2233567788864       4667666555666 88888776654433221 011247999999999


Q ss_pred             CCEEEEEeCCCcEEEEEee
Q 015650          315 AQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       315 ~~~l~s~~~dg~v~iwd~~  333 (403)
                      |.++++.. +..=+||.+.
T Consensus       334 G~lyv~td-~~~g~I~ri~  351 (353)
T 2g8s_A          334 GYLYVLTD-ESSGELLKVS  351 (353)
T ss_dssp             SCEEEEEC-STTEEEEEEE
T ss_pred             CcEEEEEe-CCCCEEEEEe
Confidence            98666443 2233556553

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.06  E-value=0.14  Score=45.00  Aligned_cols=192  Identities=11%  Similarity=0.060  Sum_probs=106.2

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-eeEEEe----cCCceeEEEEecC----ceEEE--ec-----
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELS----FRSEVRSVKLRRD----RIIVV--LE-----  193 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-~~~~~~----~~~~i~~~~~~~~----~~~~~--~d-----  193 (403)
                      .....++|.+++.++++.. +     +.|++++ .+++ .+..+.    .......|+++|+    +.+.+  ..     
T Consensus        29 ~~P~~ia~~pdG~l~V~e~-~-----g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTER-P-----GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             SCEEEEEEEETTEEEEEET-T-----TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCeEEEEcCCCeEEEEeC-C-----CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            4567888999988777654 3     7899887 4554 222211    2356889999997    55444  22     


Q ss_pred             ---CeEEEEEcCCc-------eee-eEeec-cCCCceeEEEeeCCCeEEEEeeCC------------ccCeEEEEEccCC
Q 015650          194 ---QKIFVYNFADL-------KLL-HQIET-IANPKGLCAVSQGVGSLVLVCPGL------------QKGQVRVEHYASK  249 (403)
Q Consensus       194 ---~~i~i~d~~~~-------~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~------------~d~~i~v~d~~~~  249 (403)
                         +.|..|+....       +.+ ..+.. ..+....++|.+++. +|++. |.            ..+.|..++.+..
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~-G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITT-GDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEEC-CCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEE-CCCCCCccccCCCCCCeEEEEEcCCCC
Confidence               57888887643       111 11221 122345689999884 55553 32            1245666665543


Q ss_pred             --------ceeE-EeecCCceEEEEEcC-CCCEEEEEeCCC--cEEEEEEcCCCc------------------EEEEEec
Q 015650          250 --------RTKF-IMAHDSRIACFALTQ-DGQLLATSSTKG--TLVRIFNTLDGT------------------LLQEVRR  299 (403)
Q Consensus       250 --------~~~~-~~~~~~~i~~~~~sp-~g~~l~s~~~dg--~~i~iwd~~~~~------------------~~~~~~~  299 (403)
                              .... ..++. ....++|+| +|+++++-....  ..|.+..  .+.                  ++..+. 
T Consensus       180 ~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~-  255 (354)
T 3a9g_A          180 PPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG-  255 (354)
T ss_dssp             CCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred             CCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC-
Confidence                    1122 22333 346899999 676555432221  1133322  221                  112221 


Q ss_pred             CCCcccEEEEEeC-------CCCCEEEEEeCCCcEEEEEeecC
Q 015650          300 GADRAEIYSLAFS-------SNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       300 ~~~~~~v~~l~~s-------~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      . .......++|.       .+|.++++.-..+.|...+++..
T Consensus       256 ~-~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          256 S-ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             T-CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             C-CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence            1 12457788883       56777776667778888888754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.88  E-value=0.51  Score=48.49  Aligned_cols=251  Identities=10%  Similarity=0.089  Sum_probs=132.2

Q ss_pred             EEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee--EEEecCCc
Q 015650          100 FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI--GELSFRSE  177 (403)
Q Consensus       100 l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~--~~~~~~~~  177 (403)
                      ++=-..++|++.+.+.....  ..........|...+.+.....+++ +       +.+.++++..++..  ........
T Consensus       486 ivQVt~~~Irli~~~~~~~~--~~w~~p~~~~I~~As~n~~~vvva~-g-------~~l~~fel~~~~L~~~~~~~l~~e  555 (1158)
T 3ei3_A          486 LIQITSASVRLVSQEPKALV--SEWKEPQAKNISVASCNSSQVVVAV-G-------RALYYLQIHPQELRQISHTEMEHE  555 (1158)
T ss_dssp             EEEEESSCEEEEESSSCCEE--EEECCTTCCCCCEEEECSSEEEEEE-T-------TEEEEEEEETTEEEEEEEEECSSC
T ss_pred             EEEEecCEEEEEECCCCeEE--EEEECCCCCEEEEEEeCCCEEEEEE-C-------CEEEEEEeeCCceeeecccCCCCc
Confidence            33334556777776544333  2232123345665565555555553 2       67888887766432  22336778


Q ss_pred             eeEEEEecC------ceEEE---e-cCeEEEEEcCCceeeeEeeccC-CCceeEEEeeCCCeEEEEeeCCccCeEEEEEc
Q 015650          178 VRSVKLRRD------RIIVV---L-EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (403)
Q Consensus       178 i~~~~~~~~------~~~~~---~-d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~  246 (403)
                      |.|+++.+.      ..+++   . |++|+|+++.+.+.+....... .....+.+..-+...++.. |..||.+..+.+
T Consensus       556 vscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~i-gl~dG~l~~~~~  634 (1158)
T 3ei3_A          556 VACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLC-ALGDGALFYFGL  634 (1158)
T ss_dssp             EEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEE-EETTSEEEEEEE
T ss_pred             eEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEE-EeCCCeEEEEEE
Confidence            999999763      23444   2 8999999998866654432211 1223344433334445543 557888877665


Q ss_pred             cC--CceeE---EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC--CCEEE
Q 015650          247 AS--KRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN--AQWLA  319 (403)
Q Consensus       247 ~~--~~~~~---~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d--~~~l~  319 (403)
                      +.  +.+..   ..--..++.-..|...|..-+.++.+.. ..++-- .++....-.  ....--....|+..  ..-++
T Consensus       635 d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp-~liy~~-~~~l~~s~l--~~~~v~~~~~F~se~~~~g~v  710 (1158)
T 3ei3_A          635 NIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRP-TVIYSS-NHKLVFSNV--NLKEVNYMCPLNSDGYPDSLA  710 (1158)
T ss_dssp             CTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSC-EEEEES-SSSEEEEEB--SSSCCCEEEEECCSSSTTEEE
T ss_pred             cCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCC-EEEEEc-CCceEEecc--ChHHhceEeccCcccCCCcEE
Confidence            43  33221   1111334444444444443333344444 445543 344332211  11111233345432  13444


Q ss_pred             EEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEc
Q 015650          320 VSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG  399 (403)
Q Consensus       320 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~  399 (403)
                      ..+ ++.++|..+++-+                                 .|.+.++.+. ..+..++++|+.+.++++.
T Consensus       711 ~~~-~~~LrI~~i~~~~---------------------------------~~~~~~ipL~-~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          711 LAN-NSTLTIGTIDEIQ---------------------------------KLHIRTVPLY-ESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             EEC-SSCEEEEEECCSS---------------------------------SEEEEEEECS-SEEEEEEEEGGGTEEEEEE
T ss_pred             EEc-CCceEEEEecccC---------------------------------CeeEEEEeCC-CCceEEEEcCCCCEEEEEE
Confidence            443 4569999986543                                 2445555553 4778899999888877765


Q ss_pred             c
Q 015650          400 M  400 (403)
Q Consensus       400 ~  400 (403)
                      .
T Consensus       756 ~  756 (1158)
T 3ei3_A          756 S  756 (1158)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.87  E-value=0.18  Score=43.22  Aligned_cols=173  Identities=7%  Similarity=0.009  Sum_probs=84.5

Q ss_pred             ceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEec------------CeEEEEEcCCceeeeEeeccCCCceeEE
Q 015650          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVLE------------QKIFVYNFADLKLLHQIETIANPKGLCA  221 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~  221 (403)
                      ..+.+||..+++-...-.  ....-.+++.. ++.+++..            +.+.+||+.+.+-...-..........+
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            578999988765332211  11111233333 44444422            3588999877543221111111111122


Q ss_pred             EeeCCCeEEEEeeCCc----cCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcC
Q 015650          222 VSQGVGSLVLVCPGLQ----KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTL  289 (403)
Q Consensus       222 ~~~~~~~~~~~~~g~~----d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~  289 (403)
                      ... ++.++++ .|..    ...+.+||..+..-..+...   ...-..+.+  ++++++.|+.+     .. +.+||..
T Consensus       118 ~~~-~~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~  192 (308)
T 1zgk_A          118 GVI-DGHIYAV-GGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNS-AECYYPE  192 (308)
T ss_dssp             EEE-TTEEEEE-CCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCC-EEEEETT
T ss_pred             EEE-CCEEEEE-cCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCce-EEEEeCC
Confidence            222 3444443 3422    24688899887654443221   111222333  67777777754     34 8999987


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-----CcEEEEEeecCC
Q 015650          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d-----g~v~iwd~~~~~  336 (403)
                      +.+-...-........-..+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       193 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          193 RNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            7654322111111111222333  66777777654     458888877654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.78  E-value=0.21  Score=42.55  Aligned_cols=173  Identities=9%  Similarity=0.043  Sum_probs=85.9

Q ss_pred             ceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe--------cCeEEEEEcCCce---eeeEeeccCCCceeEEE
Q 015650          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLK---LLHQIETIANPKGLCAV  222 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~--------d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~  222 (403)
                      ..+.+||..+++-...-.  ....-.+++.. ++.+++.        -+.+.+||+.+.+   -...-..........+.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~  109 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT  109 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence            578899988765332211  11111233333 3444442        1369999988755   22211111111122222


Q ss_pred             eeCCCeEEEEeeCCc----cCeEEEEEccCCceeEEeecC---CceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcCC
Q 015650          223 SQGVGSLVLVCPGLQ----KGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTK-----GTLVRIFNTLD  290 (403)
Q Consensus       223 ~~~~~~~~~~~~g~~----d~~i~v~d~~~~~~~~~~~~~---~~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~~  290 (403)
                      .. ++.++++ .|..    ...+.+||..+..-..+....   ..-.++.+  ++++++.|+.+     .. +.+||..+
T Consensus       110 ~~-~~~lyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~~d~~~  184 (301)
T 2vpj_A          110 TL-GDMIYVS-GGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNS-VEKYDPHT  184 (301)
T ss_dssp             EE-TTEEEEE-CCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCC-EEEEETTT
T ss_pred             EE-CCEEEEE-cccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccce-EEEEeCCC
Confidence            22 3444444 3422    246888998886654443211   11122222  67777777754     34 89999887


Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-----CcEEEEEeecCC
Q 015650          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (403)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d-----g~v~iwd~~~~~  336 (403)
                      .+-...-...........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       185 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          185 GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            755432111111111222333  56777777754     457888877654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.70  E-value=0.53  Score=46.14  Aligned_cols=233  Identities=9%  Similarity=0.016  Sum_probs=126.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe--eEEEEecc----cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR--EIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      ..|.++.-..+|.+.+.. .+|+..++..++.  ........    .-....|.++....++...++..       +-|.
T Consensus       324 ~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-------~GL~  395 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD-------GSIN  395 (758)
T ss_dssp             CBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET-------TEEE
T ss_pred             ceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC-------CcHh
Confidence            468888877778776654 5677777654321  11001110    01223578887777665544443       4588


Q ss_pred             EEECCCCceeEEEe-------cCCceeEEEEecCceEEE-e-cCeEEEEEcCCc-----eee---eEeecc----CCCce
Q 015650          160 IWDDHQSRCIGELS-------FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADL-----KLL---HQIETI----ANPKG  218 (403)
Q Consensus       160 iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~-~-d~~i~i~d~~~~-----~~~---~~~~~~----~~~~~  218 (403)
                      .+|..+++...-..       ....|.++....++.+.+ + .+-|.++|..+.     ...   ..+...    ...+.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~  475 (758)
T 3ott_A          396 RYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFIN  475 (758)
T ss_dssp             EEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEE
T ss_pred             hcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceee
Confidence            89987765432211       123577888877776655 4 467889986531     111   111111    11234


Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeec----CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEE
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~----~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (403)
                      .+....++. ++++. |.. +-|..+|..++....+...    ...+.++....+|.+.+ |+.. . |..||..+++..
T Consensus       476 ~i~~d~~g~-lWi~~-~t~-~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-G-l~~~~~~~~~~~  549 (758)
T 3ott_A          476 QIIPDNEGN-VWVLL-YNN-KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-G-VMRINPKDESQQ  549 (758)
T ss_dssp             EEEECTTSC-EEEEE-TTC-SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-E-EEEECC--CCCC
T ss_pred             eEEEcCCCC-EEEEc-cCC-CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-c-eEEEecCCCceE
Confidence            444433332 34322 323 4577889887766655321    24678888888887654 4554 5 888987655432


Q ss_pred             EEEe-cCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          295 QEVR-RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       295 ~~~~-~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                       .+. .+.....|.++... +|. |..++.+| |..||..+.+
T Consensus       550 -~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~  588 (758)
T 3ott_A          550 -SISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMD  588 (758)
T ss_dssp             -BCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCC
T ss_pred             -EecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCce
Confidence             111 11122468888764 555 44455566 7777776554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.69  E-value=0.25  Score=42.27  Aligned_cols=172  Identities=8%  Similarity=0.009  Sum_probs=95.8

Q ss_pred             eeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e---c-------------CeEEEE
Q 015650          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---E-------------QKIFVY  199 (403)
Q Consensus       137 ~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~---d-------------~~i~i~  199 (403)
                      +..+..++.....+     +.|+..+..... ...+... .  +--+++++.++. .   +             ..|+..
T Consensus        23 ~~g~~iy~~n~~d~-----~~ly~~~~dg~~-~~~l~~~-~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i   93 (302)
T 3s25_A           23 ESDGEVFFSNTNDN-----GRLYAMNIDGSN-IHKLSND-T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI   93 (302)
T ss_dssp             EETTEEEEEEGGGT-----TEEEEEETTSCS-CEEEEEE-E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred             EeCCEEEEEeCCCC-----ceEEEEcCCCCC-CEEccCC-c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence            34445555544333     566666643333 3333311 1  234566776666 1   1             357777


Q ss_pred             EcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe-eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC
Q 015650          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC-PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (403)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~  278 (403)
                      ++...+.. .+..  .  ....++++++.++++. .......|...++.......+..+..    ..++++++.|+-.+.
T Consensus        94 ~~dg~~~~-~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~  164 (302)
T 3s25_A           94 KRNGHGST-VLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNP  164 (302)
T ss_dssp             ETTSCCCE-EEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECT
T ss_pred             eCCCCcce-Eeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeC
Confidence            77655432 2221  1  2336788888877664 11235667777887766666665543    456788998886665


Q ss_pred             -CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          279 -KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       279 -dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                       ... |.+.++..+.....+..     ... ..+.|++++|+-...++.-+|+.+.
T Consensus       165 g~~~-Iy~~~l~g~~~~~l~~~-----~~~-~~~~P~g~~iy~t~~~~~~~I~~~~  213 (302)
T 3s25_A          165 KNGQ-LYRYDTASQSEALFYDC-----NCY-KPVVLDDTNVYYMDVNRDNAIVHVN  213 (302)
T ss_dssp             TTCC-EEEEETTTTEEEEEECS-----CEE-EEEEEETTEEEEEEGGGTTEEEEEC
T ss_pred             CCce-EEEEECCCCCEEEEeCC-----Ccc-ceeeecCCEEEEEEcCCCcEEEEEE
Confidence             456 88888866654433331     222 2355999988766543323444443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.63  E-value=0.28  Score=42.11  Aligned_cols=218  Identities=13%  Similarity=0.099  Sum_probs=101.7

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC-----CCCCCCCceEEEEECCCCceeEEEe
Q 015650           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSRCIGELS  173 (403)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-----~d~~~~~~~i~iwd~~~~~~~~~~~  173 (403)
                      +++.|+ +.+.+||..+.+-.. ..+.......-.++....+.+++++|.     .........+.+||..+++-...-.
T Consensus         7 l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344554 568999988776543 333211122233344445566666652     1100001237888887765422111


Q ss_pred             cC--CceeEEEEecCceEEE--ec--------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC-c---
Q 015650          174 FR--SEVRSVKLRRDRIIVV--LE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL-Q---  237 (403)
Q Consensus       174 ~~--~~i~~~~~~~~~~~~~--~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~---  237 (403)
                      ..  ..-.+++...+..+++  .+        +.+.+||+.+.+-...-..........+... ++.+++. .|. .   
T Consensus        85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~-GG~~~~~~  162 (315)
T 4asc_A           85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH-MDLVYVI-GGKGSDRK  162 (315)
T ss_dssp             BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEE-CCBCTTSC
T ss_pred             CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE-CCEEEEE-eCCCCCCc
Confidence            11  1112233333333333  11        3588999887542221111111112222223 3444443 343 1   


Q ss_pred             -cCeEEEEEccCCceeEEeecC---CceEEEEEcCCCCEEEEEeCCCc----EEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          238 -KGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       238 -d~~i~v~d~~~~~~~~~~~~~---~~i~~~~~sp~g~~l~s~~~dg~----~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                       -..+.+||..+..-..+....   ....++.+  ++++++.|+.++.    .+.+||..+.+-...-...........+
T Consensus       163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  240 (315)
T 4asc_A          163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV  240 (315)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence             246888998876544433211   11122223  6777788776542    2889998877543322111111112223


Q ss_pred             EeCCCCCEEEEEeCC
Q 015650          310 AFSSNAQWLAVSSDK  324 (403)
Q Consensus       310 ~~s~d~~~l~s~~~d  324 (403)
                      .+  ++++++.|+.+
T Consensus       241 ~~--~~~l~v~GG~~  253 (315)
T 4asc_A          241 SL--VGTLYAIGGFA  253 (315)
T ss_dssp             EE--TTEEEEEEEEE
T ss_pred             EE--CCEEEEECCcc
Confidence            33  66777777753

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.51  E-value=0.38  Score=42.11  Aligned_cols=138  Identities=16%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc-----cCeEEEEEc--cCCceeEEeec---CCceEE
Q 015650          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ-----KGQVRVEHY--ASKRTKFIMAH---DSRIAC  263 (403)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----d~~i~v~d~--~~~~~~~~~~~---~~~i~~  263 (403)
                      +.+.+||+.+.+-...-..........+....++.+++. .|..     ...+.+||+  .+..-..+...   ......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~-GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLI-NGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEE-CCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEE-eeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            479999988754322211111111101222224455544 3421     345677776  44333332221   111111


Q ss_pred             EEEcCCCCEEEEEeCC----------------------CcEEEEEEcCCCcEEE--EEecCCCcccEEEEEeCCCCCEEE
Q 015650          264 FALTQDGQLLATSSTK----------------------GTLVRIFNTLDGTLLQ--EVRRGADRAEIYSLAFSSNAQWLA  319 (403)
Q Consensus       264 ~~~sp~g~~l~s~~~d----------------------g~~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~s~d~~~l~  319 (403)
                      .+...++++++.|+.+                      .. +.+||+.+.+-..  .+...  ...-.++.  .++++++
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~--r~~~~~~~--~~~~i~v  321 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS-TDIHLWHNGKWDKSGELSQG--RAYGVSLP--WNNSLLI  321 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEEC-CEEEECC---CEEEEECSSC--CBSSEEEE--ETTEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceee-EEEEecCCCceeeCCCCCCC--cccceeEE--eCCEEEE
Confidence            1222367777777632                      24 7899988664332  22211  11122222  3678888


Q ss_pred             EEeCCC------cEEEEEeecCCC
Q 015650          320 VSSDKG------TVHVFNLKVNSG  337 (403)
Q Consensus       320 s~~~dg------~v~iwd~~~~~~  337 (403)
                      .|+.++      .|.++++++++-
T Consensus       322 ~GG~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          322 IGGETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             EEEECGGGCEEEEEEEEEC-CCSC
T ss_pred             EeeeCCCCCEeeeEEEEEEcCcEe
Confidence            888543      366668887763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.39  E-value=0.34  Score=42.22  Aligned_cols=160  Identities=11%  Similarity=0.000  Sum_probs=89.9

Q ss_pred             cCCceeEEEEecCceEEEe---cCeEEEEEcCCceee--eEee----ccCCCceeEEEeeC---CCeEEEEeeCCccCeE
Q 015650          174 FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL--HQIE----TIANPKGLCAVSQG---VGSLVLVCPGLQKGQV  241 (403)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~--~~~~----~~~~~~~~~~~~~~---~~~~~~~~~g~~d~~i  241 (403)
                      .-.....|+|.|||.+++.   .|.|++++..+++..  ..+.    ........++++|+   +..+|+..+...++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            3456789999999988883   678999986555432  1111    12234456888885   4566665443345566


Q ss_pred             EEEEccCC-----c---ee-EEe----ecCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEEEcCCCc---
Q 015650          242 RVEHYASK-----R---TK-FIM----AHDSRIACFALTQDGQLLATSST-------------KGTLVRIFNTLDGT---  292 (403)
Q Consensus       242 ~v~d~~~~-----~---~~-~~~----~~~~~i~~~~~sp~g~~l~s~~~-------------dg~~i~iwd~~~~~---  292 (403)
                      .-|.+...     .   .. .+.    .....-..|.|.|||.++++.+.             .|. |.-.+.. ++   
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~-IlRi~~d-G~ip~  187 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK-ILRMTPD-GEPAP  187 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC-EEEECTT-SSBCT
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE-EEEEeCC-CCccC
Confidence            66666541     1   11 111    11223467999999987776542             244 4444432 22   


Q ss_pred             -----EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCC
Q 015650          293 -----LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSG  337 (403)
Q Consensus       293 -----~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~  337 (403)
                           ....+..+ + .....++|+|+|.++++=. .|+.=.|-.+..+.+
T Consensus       188 ~nPf~~~~i~a~G-~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~n  236 (347)
T 3das_A          188 GNPFPGSPVYSYG-H-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDN  236 (347)
T ss_dssp             TCSSTTCCEEEBC-C-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCB
T ss_pred             CCCCCCCeEEeeC-C-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCE
Confidence                 01122211 3 2456899999987665542 344445555555554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.32  E-value=0.42  Score=40.65  Aligned_cols=173  Identities=16%  Similarity=0.120  Sum_probs=83.7

Q ss_pred             ceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe--------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeC
Q 015650          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  225 (403)
                      ..+..||+.+.+-...-.  ....-.+++.. ++.+++.        -..+.+||..+.+-...-..........+... 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence            468889988775332211  11111233333 4444442        13688999887643222111111111222222 


Q ss_pred             CCeEEEEeeCCcc----CeEEEEEccCCceeEEeecC---CceEEEEEcCCCCEEEEEeCC-------CcEEEEEEcCCC
Q 015650          226 VGSLVLVCPGLQK----GQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTK-------GTLVRIFNTLDG  291 (403)
Q Consensus       226 ~~~~~~~~~g~~d----~~i~v~d~~~~~~~~~~~~~---~~i~~~~~sp~g~~l~s~~~d-------g~~i~iwd~~~~  291 (403)
                      ++.++++ .|...    ..+.+||+.+..-..+....   .....+.+  ++++++.|+.+       .. +.+||..+.
T Consensus       108 ~~~iyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~-~~~yd~~~~  183 (302)
T 2xn4_A          108 NGLLYAV-GGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLST-VECYNATTN  183 (302)
T ss_dssp             TTEEEEE-EEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCC-EEEEETTTT
T ss_pred             CCEEEEE-cCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccE-EEEEeCCCC
Confidence            3444444 34221    35778888876655443211   11122222  66777776642       34 889998877


Q ss_pred             cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-----CcEEEEEeecCC
Q 015650          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (403)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d-----g~v~iwd~~~~~  336 (403)
                      +-...-...........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          184 EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            54432111111111222233  66777777754     357788876654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.045  Score=47.54  Aligned_cols=106  Identities=13%  Similarity=0.140  Sum_probs=59.2

Q ss_pred             EEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEee---eCC-eEEEeeCCCCCCCCCceEEEEECCCCceeEEEec
Q 015650          100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF---RCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (403)
Q Consensus       100 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~  174 (403)
                      +++++ |+.|.-+|.++++........  ...+......   ..+ ..+++....|     |.|..++..+|.....+.-
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~d-----G~l~a~~~~~G~~~~~~~~   85 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGD-----GNIYYFNAHQGLQKLPLSI   85 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTT-----TEEEEEETTTEEEEEEEEH
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCC-----CEEEEEECCCCcEEeeecc
Confidence            33343 555777777777666543332  1112221110   112 3333432455     9999999988866555542


Q ss_pred             C-----CceeE---EEE------ecCceEEE--ecCeEEEEEcCCceeeeEeec
Q 015650          175 R-----SEVRS---VKL------RRDRIIVV--LEQKIFVYNFADLKLLHQIET  212 (403)
Q Consensus       175 ~-----~~i~~---~~~------~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~  212 (403)
                      .     .++..   ..+      +.++.+++  .+++++..|+++|+.+.++..
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            1     12221   001      24566665  589999999999999998864

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.17  E-value=0.59  Score=40.87  Aligned_cols=48  Identities=4%  Similarity=-0.071  Sum_probs=26.9

Q ss_pred             CeEEEEEccCCceeEEeecC--Cce-EEEEEcCCCCEEEEEeC------CCcEEEEEEc
Q 015650          239 GQVRVEHYASKRTKFIMAHD--SRI-ACFALTQDGQLLATSST------KGTLVRIFNT  288 (403)
Q Consensus       239 ~~i~v~d~~~~~~~~~~~~~--~~i-~~~~~sp~g~~l~s~~~------dg~~i~iwd~  288 (403)
                      ..+.+||..+..-..+..-.  ... .+++.. ++++++.|+.      ... +.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~-v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDA-VFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCC-EEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCc-eEEEEe
Confidence            57889998886654443211  111 222222 6667777664      234 777886

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.13  E-value=1.5  Score=45.09  Aligned_cols=236  Identities=11%  Similarity=0.103  Sum_probs=127.0

Q ss_pred             CCCeEEEEEcCC------CCEEEEEc--CCcEEEEEcCCCeeEEEEecccC-cceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           85 PPTLLHISFNQD------HGCFAAGT--DHGFRIYNCDPFREIFRRDFERG-GGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        85 ~~~i~~i~~s~d------~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ...|.|+++.+.      ++++++|.  |+.|+|+++...+......+... ....+.-..+ ....++..+-.|     
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~d-----  626 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGD-----  626 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETT-----
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCC-----
Confidence            457999999764      36889887  55699999998777765666411 1122222222 345566666666     


Q ss_pred             ceEEEEEC--CCCceeEE--Ee-cCCceeEEEEecCce--EEE-ecCeEEEEEcCCceeeeEeeccCCCc-eeEEEeeC-
Q 015650          156 NKVMIWDD--HQSRCIGE--LS-FRSEVRSVKLRRDRI--IVV-LEQKIFVYNFADLKLLHQIETIANPK-GLCAVSQG-  225 (403)
Q Consensus       156 ~~i~iwd~--~~~~~~~~--~~-~~~~i~~~~~~~~~~--~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~-  225 (403)
                      |.+.-+.+  .+|++...  .. ...++.-..+...+.  .++ ++....+|.-+ ++.... ......+ ....|+.. 
T Consensus       627 G~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~  704 (1158)
T 3ei3_A          627 GALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDG  704 (1158)
T ss_dssp             SEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSS
T ss_pred             CeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCccc
Confidence            77755544  45554432  12 344554444444332  222 46655555533 332211 1111222 33444432 


Q ss_pred             -CCeEEEEeeCCccCeEEEEEccCCc-e-eEEeecCCceEEEEEcCCCCEEEEEeCC-----------------------
Q 015650          226 -VGSLVLVCPGLQKGQVRVEHYASKR-T-KFIMAHDSRIACFALTQDGQLLATSSTK-----------------------  279 (403)
Q Consensus       226 -~~~~~~~~~g~~d~~i~v~d~~~~~-~-~~~~~~~~~i~~~~~sp~g~~l~s~~~d-----------------------  279 (403)
                       ++.++++    .++.++|..+..-. . .....-...+..++++|+.+.++.+..+                       
T Consensus       705 ~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1158)
T 3ei3_A          705 YPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS  780 (1158)
T ss_dssp             STTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred             CCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence             3444433    23568887765421 1 1111234566777777766655443211                       


Q ss_pred             --------------------------CcEEEEEEcCCCcEEEEEecCCCcccEEEEE---eCCC-CCEEEEEe-------
Q 015650          280 --------------------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLA---FSSN-AQWLAVSS-------  322 (403)
Q Consensus       280 --------------------------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~---~s~d-~~~l~s~~-------  322 (403)
                                                +. |++.|-.+.+.+..+.-. ....+.+++   |..+ ..+|++|+       
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~-i~lidp~t~~~i~~~~l~-~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e  858 (1158)
T 3ei3_A          781 SSVSSSKLFSSSTAPHETSFGEEVEVHN-LLIIDQHTFEVLHAHQFL-QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE  858 (1158)
T ss_dssp             EEECCCCCC----------CCCEEEEEE-EEEEETTTCCEEEEEECC-TTEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred             hcccccccccccccCchhhcCCceeeEE-EEEEeCCCCeEEEEEeCC-CCcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence                                      23 778888788877766643 224455544   4433 46888876       


Q ss_pred             ---CCCcEEEEEeec
Q 015650          323 ---DKGTVHVFNLKV  334 (403)
Q Consensus       323 ---~dg~v~iwd~~~  334 (403)
                         ..|.|++|++..
T Consensus       859 ~~~~~Gri~vf~v~~  873 (1158)
T 3ei3_A          859 AEPKQGRIVVFQYSD  873 (1158)
T ss_dssp             SSCCCEEEEEEEEET
T ss_pred             CCCCceEEEEEEEEC
Confidence               357899999983

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.87  E-value=0.69  Score=42.13  Aligned_cols=63  Identities=16%  Similarity=0.284  Sum_probs=40.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE--EEecC----CCcccEEEEEeCCC---CCEEEEEe
Q 015650          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--EVRRG----ADRAEIYSLAFSSN---AQWLAVSS  322 (403)
Q Consensus       259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~--~~~~~----~~~~~v~~l~~s~d---~~~l~s~~  322 (403)
                      .....|+|.|+|+++++-...+. |++++..+++...  .+...    .....+..|+|+||   +.+|..+.
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~-I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGK-ILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEcCCCE-EEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            35679999999997776544456 8888765555432  22211    02356789999996   55554443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.71  E-value=1.2  Score=40.59  Aligned_cols=107  Identities=12%  Similarity=0.062  Sum_probs=60.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEeccc-----CcceeEEEEeeeC----CeEEEeeCCC-----
Q 015650           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-----GGGIGVVEMLFRC----NILALVGGGP-----  149 (403)
Q Consensus        85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~----~~~~~~s~~~-----  149 (403)
                      -.....|+|.|+|+++++-..++ |++++...+.......+..     ........++++|    ++.+.++...     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            44678999999999888877654 7777654444332233321     1345678899997    4444443321     


Q ss_pred             -CCC-CCCceEEEEECCCC--c-----eeE-EEe--cCCceeEEEEecCceEEE
Q 015650          150 -DPQ-YPLNKVMIWDDHQS--R-----CIG-ELS--FRSEVRSVKLRRDRIIVV  191 (403)
Q Consensus       150 -d~~-~~~~~i~iwd~~~~--~-----~~~-~~~--~~~~i~~~~~~~~~~~~~  191 (403)
                       +.. .....|.-|+...+  +     .+. .+.  .......|+|.|||.+.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv  159 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY  159 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE
Confidence             000 00034555554322  1     111 122  123468899999998776

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.55  E-value=0.98  Score=38.55  Aligned_cols=214  Identities=10%  Similarity=0.003  Sum_probs=111.0

Q ss_pred             EcCCCCEEEEEc--CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC-------CCCceEEEEE
Q 015650           93 FNQDHGCFAAGT--DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-------YPLNKVMIWD  162 (403)
Q Consensus        93 ~s~d~~~l~~~~--~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-------~~~~~i~iwd  162 (403)
                      |+.+|..|....  ++. |...+.+.....   .+.   ...+..+....+.++.+.....+.       .....|+..+
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~---~l~---~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~   94 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIH---KLS---NDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK   94 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCSCE---EEE---EEEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCCCE---Ecc---CCceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence            345677776664  233 555555443322   221   122344444445555444322000       0015677778


Q ss_pred             CCCCceeEEEecCCceeEEEEecCceEEE-ec----C--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV-LE----Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d----~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      +..++.......  .  ...+++++..++ .+    +  .|+..++.. .....+..+..    ..++++++.+++..  
T Consensus        95 ~dg~~~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~--  163 (302)
T 3s25_A           95 RNGHGSTVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNN--  163 (302)
T ss_dssp             TTSCCCEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEEC--
T ss_pred             CCCCcceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEe--
Confidence            776653332222  1  235667766666 33    3  566666653 33344433222    45688888877664  


Q ss_pred             CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC
Q 015650          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d  314 (403)
                      .....|.+.++.++..+.+..  +... ..+.|++.+|+-....+ ..|..-++..... ..+..    ..+  ..|+|+
T Consensus       164 ~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~----~~~--~~~~~~  233 (302)
T 3s25_A          164 PKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE----ANI--EHYNVY  233 (302)
T ss_dssp             TTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC----SCE--EEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC----CCc--ceEEEC
Confidence            246788888888866655532  2222 34669999888765443 2266666654443 34432    233  347788


Q ss_pred             CCEEEEEeCCCcEEEEEee
Q 015650          315 AQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       315 ~~~l~s~~~dg~v~iwd~~  333 (403)
                      +++|.-+...+.-.|+.+.
T Consensus       234 g~~Iy~~~~~~~~~i~~~~  252 (302)
T 3s25_A          234 GSLIFYQRGGDNPALCVVK  252 (302)
T ss_dssp             TTEEEEEECSSSCEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEE
Confidence            9988765432223444443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.45  E-value=0.016  Score=46.47  Aligned_cols=68  Identities=16%  Similarity=0.150  Sum_probs=43.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE------EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL------LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~------~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                      ..+..++|+|+|.+.+.  .+|. ++-.+..+...      -..+-.. .-....++.|.|+|.+.++  .||.|+-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNG-GWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECS-CGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCe-EEEECCCCCCcccccccccEeccc-ccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            36789999999986665  6776 66666544211      1122110 0112478999999998877  4688876654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.42  E-value=1.2  Score=38.90  Aligned_cols=135  Identities=13%  Similarity=0.062  Sum_probs=75.7

Q ss_pred             eEEEEeeeCCeE-EEeeCCCCCCCCCceEEEEECCCCcee---EEE----e-cCCceeEEEEecC----ceEEEe-----
Q 015650          131 GVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCI---GEL----S-FRSEVRSVKLRRD----RIIVVL-----  192 (403)
Q Consensus       131 ~v~~~~~~~~~~-~~~s~~~d~~~~~~~i~iwd~~~~~~~---~~~----~-~~~~i~~~~~~~~----~~~~~~-----  192 (403)
                      ....++|.+++. ++++.. .     |.|++++. .++..   ..+    . .......|+++|+    +.+.+.     
T Consensus        19 ~P~~i~~~pdG~~l~V~e~-~-----G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~   91 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLR-G-----GELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG   91 (353)
T ss_dssp             SEEEEEECSTTCCEEEEET-T-----TEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred             CcEEEEEcCCCCEEEEEeC-C-----ceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence            457888999987 666654 4     88999984 33321   111    1 2345789999995    444442     


Q ss_pred             -----cCeEEEEEcCCc--e--eeeE-eec------cCCCceeEEEeeCCCeEEEEeeCCc------------cCeEEEE
Q 015650          193 -----EQKIFVYNFADL--K--LLHQ-IET------IANPKGLCAVSQGVGSLVLVCPGLQ------------KGQVRVE  244 (403)
Q Consensus       193 -----d~~i~i~d~~~~--~--~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~g~~------------d~~i~v~  244 (403)
                           ...|..|++...  +  ..+. +..      ..+....++|.+++ .+|++. |..            .+.|.-+
T Consensus        92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~-Gd~~~~~~~q~~~~~~g~I~ri  169 (353)
T 2g8s_A           92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIAL-GENNQRPTAQDLDKLQGKLVRL  169 (353)
T ss_dssp             SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEE-CCTTCGGGGGCTTSCTTEEEEE
T ss_pred             CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEE-CCCCCCCccCCCCCCCeEEEEE
Confidence                 135777776432  1  1111 111      11223569999987 566654 321            2467777


Q ss_pred             EccCC-------------ceeEE-eecCCceEEEEEcC-CCCEEEE
Q 015650          245 HYASK-------------RTKFI-MAHDSRIACFALTQ-DGQLLAT  275 (403)
Q Consensus       245 d~~~~-------------~~~~~-~~~~~~i~~~~~sp-~g~~l~s  275 (403)
                      +.+..             ....+ .++ .....++|+| +|+++++
T Consensus       170 ~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          170 TDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             ETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence            76643             12222 233 3468899999 5655443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.30  E-value=1.8  Score=40.04  Aligned_cols=219  Identities=7%  Similarity=-0.039  Sum_probs=117.7

Q ss_pred             CCCCEEEEEcC-Cc-EEEEEcCCCeeEEEEecccCcceeEEEEeee--CCeEEEeeCCCCCC------------CCC--c
Q 015650           95 QDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQ------------YPL--N  156 (403)
Q Consensus        95 ~d~~~l~~~~~-~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~------------~~~--~  156 (403)
                      -||++|..-.. +. |...+++..+......+.  ....+..+.|.  |+..+++..++...            ...  +
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iP--n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~  217 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVP--NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYT  217 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECT--TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCC--CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhce
Confidence            37899998873 33 777888888776555554  44455555554  44444444332200            000  1


Q ss_pred             eEEEEECCCCceeEEEecCCceeEEEEecCceEEEe------------------cCeEEEEE------------------
Q 015650          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------------------EQKIFVYN------------------  200 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------d~~i~i~d------------------  200 (403)
                      .....|..+.+...++.-......+...+++.+.++                  -..+.++|                  
T Consensus       218 ~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          218 MYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence            222234444444333333344444555555555541                  01244444                  


Q ss_pred             -------cCC----ce-eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC------Cce-------eEEe
Q 015650          201 -------FAD----LK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS------KRT-------KFIM  255 (403)
Q Consensus       201 -------~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~------~~~-------~~~~  255 (403)
                             .+.    +. .+..+... ..-..+.++|+++.  ++++|-.+.++.++|++.      ..+       ..-.
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~p-ksPHGv~vsPDGky--i~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~  374 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVP-KNPHGCNTSSDGKY--FIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP  374 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEES-SSCCCEEECTTSCE--EEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC
T ss_pred             CCeeEEccccccccCCceEEEEeCC-CCCcceeeCCCCCE--EEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec
Confidence                   332    11 11222221 22245778888885  444577889999999885      111       1111


Q ss_pred             ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC----------cEEEEEecCCCcccEEEEEe------CCCCCEEE
Q 015650          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------TLLQEVRRGADRAEIYSLAF------SSNAQWLA  319 (403)
Q Consensus       256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~----------~~~~~~~~~~~~~~v~~l~~------s~d~~~l~  319 (403)
                      .-.-.....+|.++|....+.--|.. |.-|++...          ..+..+..+.   .+-.+.-      .+||++|+
T Consensus       375 e~GlGPlHt~Fd~~G~aYTtlfidSq-vvkWni~~a~~~~~g~~~~~v~~k~dv~Y---qpGH~~~~~get~~~dGk~lv  450 (638)
T 3sbq_A          375 ELGLGPLHTTFDGRGNAYTTLFIDSQ-VVKWNMEEAVRAYKGEKVNYIKQKLDVHY---QPGHLHASLCETNEADGKWLV  450 (638)
T ss_dssp             BCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHHHHHHTTCCCCCEEEEEECSS---CEEEEEETTTTSTTCCSCEEE
T ss_pred             cCCCcccEEEECCCCceEeeeeecce-EEEEeccHHHHHhcCccCCeeeecccccc---CCcccccCCCccCCCCccEEE
Confidence            12345678899999955555567888 999998653          4555666432   2333333      46788887


Q ss_pred             EEe
Q 015650          320 VSS  322 (403)
Q Consensus       320 s~~  322 (403)
                      +..
T Consensus       451 ~ln  453 (638)
T 3sbq_A          451 ALS  453 (638)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.20  E-value=0.96  Score=36.35  Aligned_cols=148  Identities=14%  Similarity=0.009  Sum_probs=84.3

Q ss_pred             CceeEEEEecCceEEE-ecCeEEEEEcCCcee------eeEee-ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          176 SEVRSVKLRRDRIIVV-LEQKIFVYNFADLKL------LHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      ..+..++|+|++.+.+ .++.++-.+..+.+.      -..+- ..-+....+.+.+++.  +.+.   .||.|+-++..
T Consensus        41 ~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~--LYav---~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY--LYAV---SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC--EEEE---ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC--EEEe---CCCEEEEeCCC
Confidence            4677999999998777 788887777654211      11111 0011135566666654  4443   56888877653


Q ss_pred             CCce-------eEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc------EEEEEecCCCcccEEEEEeCC
Q 015650          248 SKRT-------KFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT------LLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       248 ~~~~-------~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~------~~~~~~~~~~~~~v~~l~~s~  313 (403)
                      +...       ..+ ..--..+..|.|.|+|.+.+..  |+. ++-+...++.      ....+- ...-....-+.|.+
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~-lyr~~~P~~~~~~wl~~~~~~g-~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ-FYKALPPVSNQDNWLARATKIG-QGGWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE-EEEECCCSSTTCCHHHHCEEEE-SSSGGGEEEEEECT
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc-EEecCCCCCCCcccccccceec-cCCcceEEEEEECC
Confidence            3111       111 1122468999999999877665  776 6544333221      111122 11223455677999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecCC
Q 015650          314 NAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ++.++++.  +|  +||....++
T Consensus       192 ~G~l~~v~--~g--~~Y~~~~p~  210 (236)
T 1tl2_A          192 VGTLFGVQ--GG--KFYEDYPPS  210 (236)
T ss_dssp             TSCEEEEE--TT--EEEEESCCC
T ss_pred             CCcEEEEe--CC--eEEecCCcc
Confidence            99888776  66  566665554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.15  E-value=1.5  Score=38.21  Aligned_cols=232  Identities=9%  Similarity=0.027  Sum_probs=122.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecc---cCcceeEEEEeeeCC----eEEEe--eCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCN----ILALV--GGG  148 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~----~~~~~--s~~  148 (403)
                      +.+...-.....|+|.|||+++++-. .+.|++++.+.+.......+.   .........++++|+    +.+.+  +..
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            44555566788999999999888887 455888875544432222221   134567889999874    33333  222


Q ss_pred             CCCCCCCceEEEEECCCC----------cee-EEEe--cCCceeEEEEecCceEEEe--c--------------CeEEEE
Q 015650          149 PDPQYPLNKVMIWDDHQS----------RCI-GELS--FRSEVRSVKLRRDRIIVVL--E--------------QKIFVY  199 (403)
Q Consensus       149 ~d~~~~~~~i~iwd~~~~----------~~~-~~~~--~~~~i~~~~~~~~~~~~~~--d--------------~~i~i~  199 (403)
                      .+     +.|.-|.+..+          +.+ ..+.  .......|.|.|||.+.++  |              +.|.-+
T Consensus       105 ~~-----~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          105 SD-----NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             SS-----EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             CC-----CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence            33     56666665542          111 1122  1224567999999987663  1              455555


Q ss_pred             EcCCce--------eeeEee-ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-------------------e
Q 015650          200 NFADLK--------LLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------------------T  251 (403)
Q Consensus       200 d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-------------------~  251 (403)
                      +.. ++        ....+. ++.+ ..-++|.+++ .++++-.| .++.=.|.-+..+.                   +
T Consensus       180 ~~d-G~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G-~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~  255 (347)
T 3das_A          180 TPD-GEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQ-RLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV  255 (347)
T ss_dssp             CTT-SSBCTTCSSTTCCEEEBCCSB-CCEEEECTTC-CEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred             eCC-CCccCCCCCCCCeEEeeCCCC-cceEEECCCC-CEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence            543 22        011221 2322 3467888854 44444333 33222222222211                   1


Q ss_pred             eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE---EEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650          252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      ..+..+......|+|. +|.+++..-..+. |....+.....   ...+... ....+.+|+..|||.++++..
T Consensus       256 ~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~-~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          256 AQWSTDEASPSGIAYA-EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEG-EYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEECTTTCCEEEEEEE-TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTT-TSSCEEEEEEEETTEEEEEEC
T ss_pred             EecCCCCCCCcceEEE-cCceeeccccCCE-EEEEEecCCceecceEEeecC-CCCCccEEEECCCCcEEEEEc
Confidence            1122222355677776 4655555555555 66666654432   1222211 235799999999998766654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.88  E-value=1.6  Score=37.30  Aligned_cols=217  Identities=12%  Similarity=0.069  Sum_probs=99.1

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC---CCC--CCCceEEEEECCCCceeEE--
Q 015650           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQ--YPLNKVMIWDDHQSRCIGE--  171 (403)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~--~~~~~i~iwd~~~~~~~~~--  171 (403)
                      +++.|+ ..+.+||..+.+-.. ..+.......-.++....+.+++++|..   +..  .....+.+||..+.+-...  
T Consensus        18 i~~~GG-~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVND-TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECS-SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhccc-cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            444444 347889987776443 2222111222334444556666666621   100  0012377888877654322  


Q ss_pred             EecCCceeEEEEecCceEEE--ec-------CeEEEEEcCCceeeeEeeccCCCce-eEEEeeCCCeEEEEeeCCc----
Q 015650          172 LSFRSEVRSVKLRRDRIIVV--LE-------QKIFVYNFADLKLLHQIETIANPKG-LCAVSQGVGSLVLVCPGLQ----  237 (403)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~--~d-------~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~----  237 (403)
                      +.....-.+++...+..+++  .+       ..+.+||+.+.+-...- ....+.. ..+.. .++.+++. .|..    
T Consensus        96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~-~~~~iyv~-GG~~~~~~  172 (318)
T 2woz_A           96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVIS-HNGMIYCL-GGKTDDKK  172 (318)
T ss_dssp             BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEE-ETTEEEEE-CCEESSSC
T ss_pred             CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEE-ECCEEEEE-cCCCCCCC
Confidence            11111122333333334444  22       25888998875432211 1111111 11222 33444443 3421    


Q ss_pred             -cCeEEEEEccCCceeEEeecC---CceEEEEEcCCCCEEEEEeCCCc----EEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          238 -KGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       238 -d~~i~v~d~~~~~~~~~~~~~---~~i~~~~~sp~g~~l~s~~~dg~----~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                       ...+.+||..+..-..+....   ....++.+  ++++++.|+.++.    .+.+||+.+.+-...-...........+
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  250 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV  250 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE
Confidence             245889999886655443211   11122222  6777777765431    1788998876543321111011111222


Q ss_pred             EeCCCCCEEEEEeCC
Q 015650          310 AFSSNAQWLAVSSDK  324 (403)
Q Consensus       310 ~~s~d~~~l~s~~~d  324 (403)
                      .+  ++++++.|+.+
T Consensus       251 ~~--~~~i~v~GG~~  263 (318)
T 2woz_A          251 SL--AGSLYAIGGFA  263 (318)
T ss_dssp             EE--TTEEEEECCBC
T ss_pred             EE--CCEEEEECCee
Confidence            22  56777777643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.70  E-value=0.11  Score=45.09  Aligned_cols=111  Identities=14%  Similarity=0.233  Sum_probs=67.3

Q ss_pred             CceEEE--ecCeEEEEEcCCceeeeEeeccC-CCceeEEEe-e---CCCeEEEEeeCCccCeEEEEEccCCceeEEee--
Q 015650          186 DRIIVV--LEQKIFVYNFADLKLLHQIETIA-NPKGLCAVS-Q---GVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--  256 (403)
Q Consensus       186 ~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~-~---~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~--  256 (403)
                      ++.+++  .||.|+-+|..+|+.+..++... .+  .+... +   .+...+++. ...||.|..++..++..+.-..  
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p--~~~~~~~~~~~~~~~~vv~-p~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQP--LIEIQEPSRLETYETLIIE-PFGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCC--SEECCCSCTTTSSEEEEEC-CSTTTEEEEEETTTEEEEEEEEHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCC--cEEecCCccccCCcEEEEE-ECCCCEEEEEECCCCcEEeeeccc
Confidence            444455  59999999999999999887641 11  11111 1   122333332 2368999999987764332111  


Q ss_pred             ---cCCceEE---EEE-c----CCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650          257 ---HDSRIAC---FAL-T----QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       257 ---~~~~i~~---~~~-s----p~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (403)
                         ...++..   ..+ .    ..+..+++|+.+|. +.-.|+.+|+.+.++...
T Consensus        87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHHTTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTT
T ss_pred             cceeccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecC
Confidence               1112211   000 0    14557889999999 999999999999988753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.70  E-value=3.3  Score=40.01  Aligned_cols=197  Identities=14%  Similarity=0.092  Sum_probs=97.7

Q ss_pred             CCCCEEEEEcC-----CcEEEEEcCCCeeEEEE-e-----cccCcceeEEEEeee-CCeEEEeeCCCCCCCCCceEEEEE
Q 015650           95 QDHGCFAAGTD-----HGFRIYNCDPFREIFRR-D-----FERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        95 ~d~~~l~~~~~-----~~i~iw~~~~~~~~~~~-~-----~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      -++.+++.|+.     +.+.+||..+.+-.... .     +. ............ .+..++++|.....-....+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p-~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVP-VARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCC-CCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCC-ccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            56777777763     23888998776544333 2     11 111122222232 444555544332111125688999


Q ss_pred             CCCCceeEE--EecCCceeEEEEecCceEEEecC-----eEEEEEcCCceeeeEe-----eccCCCceeEEEeeCCCeEE
Q 015650          163 DHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLEQ-----KIFVYNFADLKLLHQI-----ETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       163 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  230 (403)
                      ..+.+-...  +.....-.+++...++.+++..|     .+.+||+.+.+-...-     .........+.+....+.++
T Consensus       475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            887643322  11111222333323555555322     7999999875432211     11111112244444434555


Q ss_pred             EEeeCCc------cCeEEEEEccCCc------eeEEeec---CCceEEEEEcCCCCEEEEEeCC--------CcEEEEEE
Q 015650          231 LVCPGLQ------KGQVRVEHYASKR------TKFIMAH---DSRIACFALTQDGQLLATSSTK--------GTLVRIFN  287 (403)
Q Consensus       231 ~~~~g~~------d~~i~v~d~~~~~------~~~~~~~---~~~i~~~~~sp~g~~l~s~~~d--------g~~i~iwd  287 (403)
                      +. .|..      ...+.+||+.+..      -..+...   ...-.++....++++++.|+.+        .. |.+||
T Consensus       555 v~-GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-v~~yd  632 (695)
T 2zwa_A          555 IL-GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS-IISLD  632 (695)
T ss_dssp             EE-CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS-EEEEE
T ss_pred             EE-CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe-EEEEE
Confidence            44 3421      2468899998876      3333221   1111223333347778888742        45 89999


Q ss_pred             cCCCcEE
Q 015650          288 TLDGTLL  294 (403)
Q Consensus       288 ~~~~~~~  294 (403)
                      ..+.+-.
T Consensus       633 ~~t~~W~  639 (695)
T 2zwa_A          633 PLSETLT  639 (695)
T ss_dssp             TTTTEEE
T ss_pred             CCCCeEE
Confidence            9887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.34  E-value=2.1  Score=36.27  Aligned_cols=191  Identities=14%  Similarity=0.046  Sum_probs=94.9

Q ss_pred             CCCEEEEEcC-----CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeE
Q 015650           96 DHGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (403)
Q Consensus        96 d~~~l~~~~~-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~  170 (403)
                      ++++++.|+.     +.+.+||..+.+-.....+. ...... .+....+.++++++..........+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP-TPRDSL-AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS-SCCBSC-EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC-ccccce-eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            6677777762     33888898877654444443 111111 2222344555555432111122578999988775433


Q ss_pred             EEe--cCCceeEEEEecCceEEE--e---------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650          171 ELS--FRSEVRSVKLRRDRIIVV--L---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (403)
Q Consensus       171 ~~~--~~~~i~~~~~~~~~~~~~--~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (403)
                      .-.  ....-.+++...+..+++  .         -..+.+||+.+.+-...-..........+... ++.++++ .|..
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~-GG~~  210 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAV-GGQN  210 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE-CCEE
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEE-eCCC
Confidence            211  111222333333333444  1         24588999887643222111111111222222 3444444 3422


Q ss_pred             ----cCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcCCCcE
Q 015650          238 ----KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTL  293 (403)
Q Consensus       238 ----d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~~  293 (403)
                          -..+.+||+.+..-..+...   .....++.+  ++++++.|+.+     .. +.+||..+.+-
T Consensus       211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W  275 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGH-ILEYNTETDKW  275 (306)
T ss_dssp             TTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCE-EEEEETTTTEE
T ss_pred             CCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeee-EEEEcCCCCeE
Confidence                24688899888665444221   122233333  67788888754     34 88999887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.63  E-value=3  Score=35.51  Aligned_cols=196  Identities=16%  Similarity=0.139  Sum_probs=91.0

Q ss_pred             EcCCCCEEEEEcC-----C---c----EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC--CCCCCCceE
Q 015650           93 FNQDHGCFAAGTD-----H---G----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP--DPQYPLNKV  158 (403)
Q Consensus        93 ~s~d~~~l~~~~~-----~---~----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~--d~~~~~~~i  158 (403)
                      ...++++++.|+.     .   .    +.+||..+.+-.....+.  ....-.++....+.+++++|..  +.......+
T Consensus        42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~  119 (315)
T 4asc_A           42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP--SPRCLFGLGEALNSIYVVGGREIKDGERCLDSV  119 (315)
T ss_dssp             ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS--SCEESCEEEEETTEEEEECCEESSTTCCBCCCE
T ss_pred             EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC--cchhceeEEEECCEEEEEeCCcCCCCCcccceE
Confidence            3457777777761     1   1    566777665543222222  1111112223345555555421  001112578


Q ss_pred             EEEECCCCceeEE--EecCCceeEEEEecCceEEE--e------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          159 MIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVV--L------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       159 ~iwd~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~--~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      .+||..+.+-...  +.....-.+++...+..+++  .      -+.+.+||+.+.+-...-..........+... ++.
T Consensus       120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~  198 (315)
T 4asc_A          120 MCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGR  198 (315)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE
T ss_pred             EEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCE
Confidence            9999887653222  11111122333333333444  1      13689999887543221111111111222222 345


Q ss_pred             EEEEeeCCcc----CeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCC-------------cEEEEEEc
Q 015650          229 LVLVCPGLQK----GQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKG-------------TLVRIFNT  288 (403)
Q Consensus       229 ~~~~~~g~~d----~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg-------------~~i~iwd~  288 (403)
                      ++++ .|..+    ..+.+||+.+..-..+...   ......+.+  ++++++.|+.++             ..|.+||+
T Consensus       199 iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~  275 (315)
T 4asc_A          199 IIVA-AGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE  275 (315)
T ss_dssp             EEEE-EEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred             EEEE-eccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC
Confidence            4444 34222    2588889888665554321   111222333  667777777532             11678888


Q ss_pred             CCCcEE
Q 015650          289 LDGTLL  294 (403)
Q Consensus       289 ~~~~~~  294 (403)
                      .+.+-.
T Consensus       276 ~~~~W~  281 (315)
T 4asc_A          276 EEKKWE  281 (315)
T ss_dssp             TTTEEE
T ss_pred             CCChhh
Confidence            776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.35  E-value=6.1  Score=38.17  Aligned_cols=191  Identities=9%  Similarity=0.087  Sum_probs=94.5

Q ss_pred             CCeEEEeeCCCCCCCCCceEEEEECCCCceeEEE-e-------cCCceeEEEEec-CceEEEe---------cCeEEEEE
Q 015650          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S-------FRSEVRSVKLRR-DRIIVVL---------EQKIFVYN  200 (403)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~-~-------~~~~i~~~~~~~-~~~~~~~---------d~~i~i~d  200 (403)
                      .+.+++++|...  .....+.+||..+++....- .       ....-.+++... ++.+++.         -+.+.+||
T Consensus       397 ~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          397 GNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             SSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             CCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            344555544321  11257889998877543322 1       111123444442 5554442         13588999


Q ss_pred             cCCcee--eeEeeccCCCceeEEEeeCCCeEEEEeeCCc-cCeEEEEEccCCceeEEee------cCCceEEEEEcCC-C
Q 015650          201 FADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYASKRTKFIMA------HDSRIACFALTQD-G  270 (403)
Q Consensus       201 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d~~i~v~d~~~~~~~~~~~------~~~~i~~~~~sp~-g  270 (403)
                      +.+.+-  +..+.  .......+....++.+++. +|.. ++.+.+||..+..-..+..      ......++.+..+ +
T Consensus       475 ~~t~~W~~~~~~p--~~R~~h~~~~~~~~~iyv~-GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~  551 (695)
T 2zwa_A          475 MKTREWSMIKSLS--HTRFRHSACSLPDGNVLIL-GGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK  551 (695)
T ss_dssp             TTTTEEEECCCCS--BCCBSCEEEECTTSCEEEE-CCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred             CCCCcEEECCCCC--CCcccceEEEEcCCEEEEE-CCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence            887432  22221  1111222222224444444 3422 2268999998866554432      1122233555555 6


Q ss_pred             CEEEEEeC--C-----CcEEEEEEcCCCcE-----EEEEecC--CCcccEEEEEeCCCCCEEEEEeCC--------CcEE
Q 015650          271 QLLATSST--K-----GTLVRIFNTLDGTL-----LQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDK--------GTVH  328 (403)
Q Consensus       271 ~~l~s~~~--d-----g~~i~iwd~~~~~~-----~~~~~~~--~~~~~v~~l~~s~d~~~l~s~~~d--------g~v~  328 (403)
                      ++++.|+.  +     .. +.+||+.+.+.     -..+...  ........+.+ .++++++.|+.+        ..|.
T Consensus       552 ~iyv~GG~~~~~~~~~~~-v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          552 QGIILGGGFMDQTTVSDK-AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             EEEEECCBCTTSSCBCCE-EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             EEEEECCcCCCCCeeeCc-EEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEE
Confidence            67777776  2     34 88999988761     1222210  01111222222 336777777742        4578


Q ss_pred             EEEeecCC
Q 015650          329 VFNLKVNS  336 (403)
Q Consensus       329 iwd~~~~~  336 (403)
                      +||+.+.+
T Consensus       630 ~yd~~t~~  637 (695)
T 2zwa_A          630 SLDPLSET  637 (695)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCe
Confidence            88877654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.75  E-value=5.6  Score=33.86  Aligned_cols=195  Identities=12%  Similarity=0.116  Sum_probs=90.4

Q ss_pred             EcCCCCEEEEEcC-----C---c----EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCC-CCCCCceEE
Q 015650           93 FNQDHGCFAAGTD-----H---G----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-PQYPLNKVM  159 (403)
Q Consensus        93 ~s~d~~~l~~~~~-----~---~----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-~~~~~~~i~  159 (403)
                      ...++.+++.|+.     +   .    +.+||..+.+-.....+.  ....-.++....+.+++++|... .......+.
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLP--SARCLFGLGEVDDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBS--SCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCC--ccccccceEEECCEEEEEcCccCCCCcccceEE
Confidence            3457788887762     1   1    556776655543222222  11111122223455666655321 001114688


Q ss_pred             EEECCCCceeEEEecCC--ceeEEEEecCceEEEec---------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          160 IWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       160 iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      +||..+.+-...-....  .-.+++. .++.+++..         +.+.+||+.+.+-...-..........+... ++.
T Consensus       131 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~  208 (318)
T 2woz_A          131 CYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGK  208 (318)
T ss_dssp             EEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE
T ss_pred             EEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCE
Confidence            88987765333211111  1112333 344444421         3589999887543222111111111112222 345


Q ss_pred             EEEEeeCCcc----CeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCC--------------CcEEEEEE
Q 015650          229 LVLVCPGLQK----GQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK--------------GTLVRIFN  287 (403)
Q Consensus       229 ~~~~~~g~~d----~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~d--------------g~~i~iwd  287 (403)
                      ++++ .|..+    ..+.+||+.+..-..+...   ......+.+  ++++++.|+.+              .. +.+||
T Consensus       209 iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~-v~~yd  284 (318)
T 2woz_A          209 IVIA-GGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVND-IWKYE  284 (318)
T ss_dssp             EEEE-EEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCC-EEEEE
T ss_pred             EEEE-cCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeee-EEEEe
Confidence            4444 34221    3577889887665444321   111122222  66777777653              24 77888


Q ss_pred             cCCCcEEE
Q 015650          288 TLDGTLLQ  295 (403)
Q Consensus       288 ~~~~~~~~  295 (403)
                      +.+.+-..
T Consensus       285 ~~~~~W~~  292 (318)
T 2woz_A          285 DDKKEWAG  292 (318)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCEehh
Confidence            87765443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.67  E-value=6.6  Score=34.55  Aligned_cols=151  Identities=9%  Similarity=0.098  Sum_probs=91.8

Q ss_pred             ceEEEEECCCC--ceeEEEec-------CCceeEEEEe---cC----ceEEE-e---cCeEEEEEcCCceeeeEeeccCC
Q 015650          156 NKVMIWDDHQS--RCIGELSF-------RSEVRSVKLR---RD----RIIVV-L---EQKIFVYNFADLKLLHQIETIAN  215 (403)
Q Consensus       156 ~~i~iwd~~~~--~~~~~~~~-------~~~i~~~~~~---~~----~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~  215 (403)
                      -+|.+||+.++  +.++.+..       ...+..+.+.   ++    +.++. +   ...|.+||+.+++.-+.+...  
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--  200 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--  200 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence            57999999999  99998873       2346778877   22    23333 3   568999999998876655211  


Q ss_pred             CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCC----CCEEEEEeCCCcEEEEEEcCC-
Q 015650          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD----GQLLATSSTKGTLVRIFNTLD-  290 (403)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~----g~~l~s~~~dg~~i~iwd~~~-  290 (403)
                            +.|+... .+...    |.-.-             -...+..|+++|+    ++.|+.....+.  ++|.+.+ 
T Consensus       201 ------~~pd~~~-~~~i~----G~~~~-------------~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~  254 (381)
T 3q6k_A          201 ------FKAERPT-KFDYG----GKEYE-------------FKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTK  254 (381)
T ss_dssp             ------GSCCSCE-EEEET----TEEEE-------------ECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHH
T ss_pred             ------CccccCc-ceEEC----CEEeE-------------eccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHH
Confidence                  2344211 22221    22111             1345899999998    888888777764  5665532 


Q ss_pred             ----C---cEEEEEecCCCcccEEEEEeC-CCCCEEEEEeCCCcEEEEEeec
Q 015650          291 ----G---TLLQEVRRGADRAEIYSLAFS-SNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       291 ----~---~~~~~~~~~~~~~~v~~l~~s-~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                          .   ..++.+-...-...-..++.. .+|.++++--....|..|+..+
T Consensus       255 ~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          255 ELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             HHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             HhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence                1   122222211001234456775 6777777777888999999875

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.78  E-value=10  Score=35.18  Aligned_cols=72  Identities=10%  Similarity=0.051  Sum_probs=51.8

Q ss_pred             ceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCC------c-------EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          260 RIACFALTQDGQLLATSST-KGTLVRIFNTLDG------T-------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~------~-------~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                      ....+.++|||++++.++. +.+ +.|+|++..      +       .....+.   .-.....+|.++|....+.--|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLspt-vtV~d~~k~~~~~~~k~~~~~~~~~ae~e~---GlGPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPT-CSMIAIDKLPDLFAGKLADPRDVIVGEPEL---GLGPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHHTTCCSCGGGGEEECCBC---CSCEEEEEECSSSEEEEEETTTT
T ss_pred             CCcceeeCCCCCEEEEcCCCCCe-EEEEEeehhhhhhhccccCcccceEeeccC---CCcccEEEECCCCceEeeeeecc
Confidence            3467889999999988776 556 999998731      1       1233332   24578899999995555555899


Q ss_pred             cEEEEEeecC
Q 015650          326 TVHVFNLKVN  335 (403)
Q Consensus       326 ~v~iwd~~~~  335 (403)
                      .|.-|++...
T Consensus       400 qvvkWni~~a  409 (638)
T 3sbq_A          400 QVVKWNMEEA  409 (638)
T ss_dssp             EEEEEEHHHH
T ss_pred             eEEEEeccHH
Confidence            9999999764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=89.45  E-value=11  Score=35.34  Aligned_cols=59  Identities=14%  Similarity=0.175  Sum_probs=42.3

Q ss_pred             eEEEEEcCCCCEEEEEeCC------------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650          261 IACFALTQDGQLLATSSTK------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (403)
Q Consensus       261 i~~~~~sp~g~~l~s~~~d------------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~  321 (403)
                      .-.|+|+|.|++++.-..+            .. +.+.+..+++..+-+... ....++.++|+||++.|++.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~-~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQ-MLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCE-EEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccce-EEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence            4678999999966643221            23 556676778877666654 55789999999999887664

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=89.34  E-value=11  Score=33.25  Aligned_cols=59  Identities=7%  Similarity=0.068  Sum_probs=31.4

Q ss_pred             ceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc---ccEEEEEeCCC-CCEEEEE
Q 015650          260 RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSN-AQWLAVS  321 (403)
Q Consensus       260 ~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~---~~v~~l~~s~d-~~~l~s~  321 (403)
                      .+.+|.++|+ ...|+.+... . |...+ ..++.-..+......   ..+..+.++|. ...|.++
T Consensus       233 ~~~~i~~~~~~~~~l~vg~~~-g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          233 DPHCVVQHPAAPDILYQQNHC-G-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             CEEEEEECSSSTTEEEEEETT-E-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             ceeEEEECCCCCCEEEEEcCC-e-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence            4889999985 3566666644 4 55554 234433333221111   24567888763 3344444

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.81  E-value=8.9  Score=34.86  Aligned_cols=105  Identities=14%  Similarity=0.092  Sum_probs=59.3

Q ss_pred             ceeEEEeeCCC-eEEEEeeCCccCeEEEEEccCCc----eeEEe---e------cCCceEEEEEcCC----CCEEEEEeC
Q 015650          217 KGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR----TKFIM---A------HDSRIACFALTQD----GQLLATSST  278 (403)
Q Consensus       217 ~~~~~~~~~~~-~~~~~~~g~~d~~i~v~d~~~~~----~~~~~---~------~~~~i~~~~~sp~----g~~l~s~~~  278 (403)
                      -..+++.|+++ .++++   ...|.|++++.....    +..+.   .      .......|+|+|+    +.+.++-+.
T Consensus        16 P~~~a~~pdG~~rl~V~---er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFIL---EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             EEEEECCSSSSCCEEEE---ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             ceEEEECCCCCeEEEEE---eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            36778888886 45544   367899998754321    11111   1      1356789999996    444333222


Q ss_pred             --C----------CcEEEEEEcCC----------CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650          279 --K----------GTLVRIFNTLD----------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (403)
Q Consensus       279 --d----------g~~i~iwd~~~----------~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg  325 (403)
                        +          .. |.-|.+..          .+.+..+...........|+|.|||.+.++.++.+
T Consensus        93 ~~~~~~~~~~~~~~~-v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           93 NQERWAIGPHDHILR-VVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCCSSCSSSSCEEEE-EEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCCcccCCcccceE-EEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence              1          13 54465532          23333433211223468999999998777766543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.09  E-value=11  Score=34.21  Aligned_cols=55  Identities=22%  Similarity=0.262  Sum_probs=34.3

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCC---cEEEEEecC-------CCcccEEEEEeCCC
Q 015650          259 SRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG---TLLQEVRRG-------ADRAEIYSLAFSSN  314 (403)
Q Consensus       259 ~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~~~---~~~~~~~~~-------~~~~~v~~l~~s~d  314 (403)
                      .....|+|.|||. .|+.+...|. |++++....   +.+..+...       ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~-i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGY-VKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTE-EEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCce-EEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3457899999995 3445567888 999974322   122222110       01356889999996

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.55  E-value=11  Score=37.82  Aligned_cols=38  Identities=8%  Similarity=0.146  Sum_probs=33.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      .+.+++..++..++++-+.|++ +|||++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeeec
Confidence            4677778888899999999999 9999999999988764

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=81.21  E-value=23  Score=29.58  Aligned_cols=184  Identities=15%  Similarity=0.067  Sum_probs=95.4

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEE-EecCCceeEEEEecCceEEEecCeEEEEEcCCceeee
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLH  208 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  208 (403)
                      ..|..++......+++.   +     |.|+.|-......+.. ......|..++.-.+..+++.+|.|+.|-......+-
T Consensus        63 ~~i~~ia~G~~hs~~l~---~-----G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~~G~v~~wG~n~~gqlg  134 (282)
T 3qhy_B           63 SGVDAIAAGNYHSLALK---D-----GEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTT  134 (282)
T ss_dssp             SCCCEEEECSSEEEEEE---T-----TEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEEETTEEEEEECCTTSTTS
T ss_pred             CCEEEEEeCCCEEEEEE---C-----CEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEEeCCeEEEecCCCCCcCC
Confidence            35666666555555552   4     8999997544221111 1124568888887776655569999999865422111


Q ss_pred             EeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650          209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (403)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd  287 (403)
                      .-.....  ....++......++ .   .+|.|..|-... +++..-......|..++.-... .++.  .||. |+.|-
T Consensus       135 ~~~~~~~--~i~~i~~G~~~~~~-l---~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~-v~~wG  204 (282)
T 3qhy_B          135 VPAEAQS--GVTALDGGVYTALA-V---KNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGK-VIAWG  204 (282)
T ss_dssp             CCGGGGS--SEEEEEECSSEEEE-E---ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTE-EEEEE
T ss_pred             CCccCCC--CeEEEEcccCEEEE-E---ECCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCe-EEEEE
Confidence            1101112  23444444444333 2   268888886554 2221111123456666654332 2333  5888 99996


Q ss_pred             cCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ....-.+. +... ....|..|+-...... +. . ||.|+.|-.....
T Consensus       205 ~n~~gqlg-~p~~-~~~~v~~i~~G~~h~~-al-~-~g~v~~wG~n~~g  248 (282)
T 3qhy_B          205 DNRYKQTT-VPTE-ALSGVSAIASGEWYSL-AL-K-NGKVIAWGSSRTA  248 (282)
T ss_dssp             CCTTSTTC-CCGG-GGSSCCEEEECSSCEE-EE-E-TTEEEEESTTCCC
T ss_pred             CCCCCCCC-CCcc-cCCCceEEEcCCCEEE-EE-E-CCEEEEecCCCCc
Confidence            54321111 1111 1245777776554333 33 3 9999999766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 7e-10
 Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 5/173 (2%)

Query: 159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKG 218
           M+  +     I   S    VR   +        L +   V             +I+   G
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSS 277
                 G     L   G +   +++   ++      ++ HD+ +        G+ + + +
Sbjct: 208 SETKKSGKPGPFL-LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              T +R+++  +   ++ +   A    + SL F   A ++   S   TV V+
Sbjct: 267 DDKT-LRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310
           +   ++  +        + G  L + S   T +++++   G  L  +        +  + 
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMTLV--GHDNWVRGVL 254

Query: 311 FSSNAQWLAVSSDKGTVHVFNLK 333
           F S  +++   +D  T+ V++ K
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYK 277

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320
           I+C A  +D   +A        V I+       +Q         ++  + ++ ++  +  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 321 SSDKGTVHVFN 331
                  +V+ 
Sbjct: 69  CGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 7/44 (15%), Positives = 17/44 (38%)

Query: 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP 349
           I   A++ +   +A+  +   VH++    N      E +  +  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ 53

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 10/136 (7%), Positives = 32/136 (23%), Gaps = 3/136 (2%)

Query: 196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM 255
             +++  +           +            +              +       T    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
                I   + ++ G+LL           +++ L       +        +  L  + + 
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLA--GHDNRVSCLGVTDDG 324

Query: 316 QWLAVSSDKGTVHVFN 331
             +A  S    + ++N
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI 213
             +WD  +  C    +   S++ ++    +         +    +++    + L      
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQL 272
               G+ +VS      +L+  G       V       R   +  HD+R++C  +T DG  
Sbjct: 268 NIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

Query: 273 LATSSTKGTLVRIFN 287
           +AT S     ++I+N
Sbjct: 327 VATGSWDSF-LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
            H+S I       +G   AT S   T  R+F+      L           I S++FS + 
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 316 QWLAVSSDKGTVHVFNLK 333
           + L    D    +V++  
Sbjct: 283 RLLLAGYDDFNCNVWDAL 300

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 22/242 (9%), Positives = 60/242 (24%), Gaps = 9/242 (3%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
                D      G +                +            +    +         D
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162

Query: 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
               +  +      +              S    +      L+  +  ++  + + L Q 
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQH 221

Query: 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
           +  +    L     G      +  G++   V V H        +  H+S +        G
Sbjct: 222 DFTSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277

Query: 271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
           +   ++      +  + T  G  + + +  +    + S   S + +++   S      V+
Sbjct: 278 KWFVSTGKDNL-LNAWRTPYGASIFQSKESS---SVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 331 NL 332
            +
Sbjct: 334 EV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323
           F +T DGQ+         L+           +++        + ++  S+  + +     
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHA---RQINTLNHGEVVCAVTISNPTRHVYTGGK 71

Query: 324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358
            G V V+++      +        +      S   
Sbjct: 72  -GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           +   P      +        R    + H   +    ++   + + T       V++++  
Sbjct: 23  MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC--VKVWDIS 80

Query: 290 DGTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSSDKGTVHVFN 331
                  V +         I S     +   L V  +  T+ +++
Sbjct: 81  HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 21/193 (10%)

Query: 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI 213
             V +WD     C+  L   +            +V   L+  I V++      +H +   
Sbjct: 157 FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 216

Query: 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRV----EHYASKRTKFIMAHDSRIACFALTQD 269
            +      +        ++  G     V++         +  +    H S + C    ++
Sbjct: 217 QSLTSGMELKDN-----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

Query: 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRR---GADRAEIYSLAFSSNAQWLAVSSDKGT 326
              + TSS  GT V++++   G  ++ +     G     ++ +  S+     AV S  GT
Sbjct: 272 --FVITSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328

Query: 327 ----VHVFNLKVN 335
               + V +  V+
Sbjct: 329 EETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
           K  K +  HD  +    L   G  + + S   T +++++ + G  L+ +        ++S
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNT-LKVWSAVTGKCLRTLV--GHTGGVWS 62

Query: 309 LAFSSNAQW 317
                N   
Sbjct: 63  SQMRDNIII 71

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312
             +AH   +     + DG  +A++S   T ++I+N     + + +     R E   L   
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTI-PVGTRIEDQQLGII 290

Query: 313 SNAQWLAVSSDKGTVHVFNL 332
              Q L   S  G ++  N 
Sbjct: 291 WTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 4/72 (5%)

Query: 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA 319
                  T  G  +   +  GT V        T  +         +      S +  + A
Sbjct: 19  TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCA 74

Query: 320 VSSDKGTVHVFN 331
                G V +++
Sbjct: 75  SGDVHGNVRIWD 86

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 2/74 (2%)

Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-RAEIYSLAFSSN 314
           A    I+   +     LL  +S  G+ + ++         ++ +    +  +    F  N
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 315 AQWLAVSSDKGTVH 328
                         
Sbjct: 68  TDLQIYVGTVQGEI 81

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358
           I  +    +   L ++S  G++ V+    +  +   +   +     P    +F
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYK--FDIQAKNVDLLQSLRYKHPLLCCNF 64

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 21/250 (8%), Positives = 44/250 (17%), Gaps = 21/250 (8%)

Query: 86  PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV 145
                IS +                +       +       G     V        + L+
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 146 GGGPDPQ--YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD 203
               D         +   D    +    L  R+  R      D +           +   
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW-----PHQSPRH 205

Query: 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIAC 263
              +               +  +    L                   T+           
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDL---------KTGKTHTQEFADLTELYFT 256

Query: 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323
              +               +  ++     L++           Y +AF      L +   
Sbjct: 257 GLRSPKDPNQIYGVLNR--LAKYDLKQRKLIKAANLDHT---YYCVAFDKKGDKLYLGGT 311

Query: 324 KGTVHVFNLK 333
              + VFN  
Sbjct: 312 FNDLAVFNPD 321

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292
                 G +R         KF   H +  A         +L + S       I+N   G 
Sbjct: 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ--FNIYNLRSGK 314

Query: 293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332
           L+       D  +I+S+ F       AV  D G   +  L
Sbjct: 315 LVHANILK-DADQIWSVNFKGKTLVAAVEKD-GQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 10/74 (13%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
           +RT       S I C     +   + T +     +R++++++   L ++        +++
Sbjct: 4   QRTTLRGHMTSVITCLQF--EDNYVITGADDKM-IRVYDSINKKFLLQLS--GHDGGVWA 58

Query: 309 LAFSSNAQWLAVSS 322
           L ++     ++ S+
Sbjct: 59  LKYAHGGILVSGST 72

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 43/316 (13%), Positives = 97/316 (30%), Gaps = 37/316 (11%)

Query: 54  EPDSFSPSIPES-NPNYQMPLPSPAESTSSSPPPTLLH------ISFNQDHGCFAAGTDH 106
           +  S   ++ +  N  Y +  P+           +L H      + F+ D    A G + 
Sbjct: 24  DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK 83

Query: 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-----VGGGPDPQYPL------ 155
             ++Y       + R   +         +    +  +      V   PD ++        
Sbjct: 84  TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143

Query: 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIAN 215
              +   +++   +       ++ S+        +V           DL+      T++ 
Sbjct: 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203

Query: 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--------AHDSRIACFALT 267
             G+  V+   G    +  G     VRV    +      +         H   +     T
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263

Query: 268 QDGQLLATSSTKGTLVRIFNTLDGTLLQ----------EVRRGADRAEIYSLAFSSNAQW 317
           +DGQ + + S   + V+++N  +               EV     +  + S+A + N ++
Sbjct: 264 RDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322

Query: 318 LAVSSDKGTVHVFNLK 333
           +   S    V  ++ K
Sbjct: 323 ILSGSKDRGVLFWDKK 338

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299
            + V+    +    + +     +     +       +  KG  +  ++     + +    
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVTEVK-- 314

Query: 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333
                 +  L  S++ + + V  D G ++ F L+
Sbjct: 315 ----NNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 6/87 (6%)

Query: 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328
           DG L+A  S +G    I +         V +  +   I  +    + +   +   +    
Sbjct: 14  DGDLIAFVS-RGQ-AFIQDVSGT----YVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDF 67

Query: 329 VFNLKVNSGSARSEPRSTSDPTLPTSS 355
           +      +G A     +  +       
Sbjct: 68  LGIYDYRTGKAEKFEENLGNVFAMGVD 94

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316
           H+  I   + + DG+ L ++  +G  +  ++   G   +          I  +  +S   
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDV-HATMITGIKTTSKGD 68

Query: 317 WLAVSSDKGTVHV 329
              VS D     V
Sbjct: 69  LFTVSWDDHLKVV 81

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333
           G++ Q VR G ++A I +L+ S++ + L  +  +G ++ +++ 
Sbjct: 2   GSIDQ-VRYGHNKA-ITALSSSADGKTLFSADAEGHINSWDIS 42

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFS--SNA 315
           +     +       +A    K   VR  +  D  +   V+  G   + + ++ FS    +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 316 QWLAVSSDKGTVHVFNLK 333
           Q+L    + G V V+   
Sbjct: 78  QYLCSGDESGKVIVWGWT 95

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 22/274 (8%), Positives = 60/274 (21%), Gaps = 29/274 (10%)

Query: 83  SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL 142
           +P   + + + N+           G  +   D      R     G  +            
Sbjct: 42  APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101

Query: 143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVLEQKIFVYNF 201
            +       +    +V ++D              ++  +   RD   +  L + + V + 
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161

Query: 202 ADLKLLHQIETIANPKGLCAVSQG----------------------VGSLVLVCPGLQKG 239
               L+      +      A                                        
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221

Query: 240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299
                       + +   D      A+         +      +  F+      ++ V  
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV---LESFDLEKNASIKRVPL 278

Query: 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333
                  YS+  S++   + +    G +  ++ +
Sbjct: 279 PH---SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.38
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.35
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.29
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.24
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.12
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.05
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.04
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.01
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.9
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.75
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.73
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.73
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.71
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.23
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.16
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.13
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.11
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.05
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.05
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.02
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.91
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.83
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.8
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.52
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.33
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.24
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.19
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.15
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.76
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.61
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.59
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.36
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.32
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.54
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.08
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.95
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.62
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.59
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.22
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	87.73
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	82.46

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-40  Score=290.36  Aligned_cols=272  Identities=13%  Similarity=0.141  Sum_probs=233.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCee---EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (403)
                      .|...|++++|+|+|++|++|+|+.|+|||+.....   ....... +|...|.+++|++++..|++++.|     |.|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~-~h~~~I~~v~~s~dg~~l~s~~~d-----g~i~  122 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGCTLIVGGEA-----STLS  122 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECTTSSEEEEEESS-----SEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeec-CCCCcEEEEEEcCCCCEEEEeecc-----cccc
Confidence            799999999999999999999987799999965432   2222333 688899999999999999999998     9999


Q ss_pred             EEECCCC--ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          160 IWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       160 iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      +||+...  +....+. |...+..++|+|++.+++   .|+.|++|++.+++.......+...+..+++++++..++++ 
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~-  201 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG-  201 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            9998755  4455555 788999999999998887   37899999999999988888899999999999988754433 


Q ss_pred             eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                        +.|+.|++||+++++......|...|.+++|+|++++|++++.|+. |++||+.+++......   |...|++++|+|
T Consensus       202 --~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~---~~~~i~~v~~s~  275 (337)
T d1gxra_         202 --GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLHL---HESCVLSLKFAY  275 (337)
T ss_dssp             --ETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEECC---CSSCEEEEEECT
T ss_pred             --cccccccccccccceeecccccccceEEEEEcccccccceeccccc-cccccccccccccccc---cccccceEEECC
Confidence              4789999999999877777778999999999999999999999999 9999999888765433   788999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCC
Q 015650          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~  393 (403)
                      ++++|++++.||.|++||+.+++.                                   +. ...+.+.|..++|+|+++
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~~~-----------------------------------~~-~~~~~~~v~~~~~s~d~~  319 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYGAS-----------------------------------IF-QSKESSSVLSCDISVDDK  319 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCE-----------------------------------EE-EEECSSCEEEEEECTTSC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCE-----------------------------------EE-EccCCCCEEEEEEeCCCC
Confidence            999999999999999999988773                                   11 234677899999999999


Q ss_pred             EEEEEccCCC
Q 015650          394 TVVILGMDGR  403 (403)
Q Consensus       394 ~l~~~~~dG~  403 (403)
                      +|++|+.||+
T Consensus       320 ~l~t~s~D~~  329 (337)
T d1gxra_         320 YIVTGSGDKK  329 (337)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEeCCCe
Confidence            9999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-38  Score=275.55  Aligned_cols=279  Identities=15%  Similarity=0.218  Sum_probs=244.4

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      +....+.+|.+.|++|+|+|++++|++|++ +.|+|||+.+++..  ..+. +|...|.++.+++++..++++..+    
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~-~h~~~V~~~~~~~~~~~~~~~~~~----   80 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLK-GHTDSVQDISFDHSGKLLASCSAD----   80 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT----
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE--EEEe-CCCCcEEEEeeecccccccccccc----
Confidence            344568899999999999999999999985 55999999988766  5665 788999999999999999988888    


Q ss_pred             CceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                       +.+.+|+....+....+. +...+.++.+++++..++   .|+.+++||+++++.+..+..+...+..+++++++..  
T Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  157 (317)
T d1vyhc1          81 -MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL--  157 (317)
T ss_dssp             -SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE--
T ss_pred             -cccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCE--
Confidence             999999998888777776 889999999999998877   4899999999999999999999999999999998773  


Q ss_pred             EEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCC--------------------CCEEEEEeCCCcEEEEEEcC
Q 015650          231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD--------------------GQLLATSSTKGTLVRIFNTL  289 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~--------------------g~~l~s~~~dg~~i~iwd~~  289 (403)
                      +++ ++.|+.|++|+..... ...+..|...+.++.|+|+                    +.++++++.|+. |++||+.
T Consensus       158 l~~-~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~  235 (317)
T d1vyhc1         158 IAS-CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVS  235 (317)
T ss_dssp             EEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETT
T ss_pred             EEE-EeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE-EEEEECC
Confidence            443 3489999999998855 4557789999999999875                    357899999999 9999999


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeee
Q 015650          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS  369 (403)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (403)
                      +++++..+..  |...|.+++|+|++++|++++.||.|+|||+++++.                                
T Consensus       236 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------------  281 (317)
T d1vyhc1         236 TGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--------------------------------  281 (317)
T ss_dssp             TTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC--------------------------------
T ss_pred             CCcEEEEEeC--CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcE--------------------------------
Confidence            9999999986  678999999999999999999999999999998874                                


Q ss_pred             eeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          370 EWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                         +..+..|.+.|++++|+|++++|++|+.||+
T Consensus       282 ---~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         282 ---MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             ---CEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             ---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence               3446778899999999999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.2e-38  Score=274.37  Aligned_cols=274  Identities=14%  Similarity=0.153  Sum_probs=228.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      +.+.+..++++|+|+.|+.+.++.|.+|++++....  ..+. +|...|.++.|+|++.++++++.|     |.|+|||+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~--~~~~-~H~~~v~~~~~sp~g~~latg~~d-----g~i~iwd~   87 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT--EIYT-EHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWDT   87 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEES
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCcee--EEEc-CCCCCEEEEEEeCCCCeEeccccC-----ceEeeeee
Confidence            344566789999999999998888999999877655  4455 789999999999999999999999     99999999


Q ss_pred             CCCcee--EEEe-cCCceeEEEEecCceEEE--e---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          164 HQSRCI--GELS-FRSEVRSVKLRRDRIIVV--L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       164 ~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~--~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      .+++..  ..+. |...|.+++|+|++.+++  .   +..+++|++++++....+..|...+..++|+|+++.++ ++ |
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l-~s-g  165 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI-IS-G  165 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE-EE-E
T ss_pred             eccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee-cc-c
Confidence            888654  3455 889999999999998877  2   45699999999999999999999999999999887543 33 4


Q ss_pred             CccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC-----CCcccEEEE
Q 015650          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----ADRAEIYSL  309 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l  309 (403)
                      +.|+.|++||+++.+ ...+..|...|.++.|+|++++|++++.|+. |++||+.+++.+..+...     .|...|+++
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccCcccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            589999999999855 4556789999999999999999999999999 999999999888877532     366789999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC-CceEEEe
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-SPYIVAF  388 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f  388 (403)
                      +|+|++++|++|+.||.|+|||+++++.                                   +..+..+.. ....+.+
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~t~~~-----------------------------------~~~l~~~~~~~~~~~~~  289 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVATLKV-----------------------------------EKTIPVGTRIEDQQLGI  289 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEE-----------------------------------EEEEECCSSGGGCEEEE
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCcE-----------------------------------EEEEECCCCccceEEEE
Confidence            9999999999999999999999998773                                   222333332 2334556


Q ss_pred             ccCCCEEEEEccCCC
Q 015650          389 GHQKNTVVILGMDGR  403 (403)
Q Consensus       389 s~d~~~l~~~~~dG~  403 (403)
                      .++++.|++++.||.
T Consensus       290 ~~~~~~l~s~s~dG~  304 (311)
T d1nr0a1         290 IWTKQALVSISANGF  304 (311)
T ss_dssp             EECSSCEEEEETTCC
T ss_pred             EecCCEEEEEECCCE
Confidence            667788999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.3e-36  Score=266.46  Aligned_cols=281  Identities=13%  Similarity=0.122  Sum_probs=233.1

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      ...+++.+|.+.|++|+|+|++++||+|+. +.|+|||+.+++..  ..+. .|...|.+++|++++.++++++.|    
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~--~~~~-~~~~~v~~v~~~~~~~~l~~~~~d----  118 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--HAIP-LRSSWVMTCAYAPSGNYVACGGLD----  118 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE--EEEE-CSCSCEEEEEECTTSSEEEEEETT----
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeE--EEEe-cccccEEeeEeeccceeeeeeccc----
Confidence            345779999999999999999999999985 45999999988766  5565 688899999999999999999998    


Q ss_pred             CceEEEEECCCCc----eeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          155 LNKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       155 ~~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                       +.+++|+.....    ....+. |...........+.....  .+.....+.............+...+....+.+...
T Consensus       119 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         119 -NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             -CCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             -ceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence             999999976653    333444 555566666666665555  588888998887776666666667777777776655


Q ss_pred             eEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccE
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (403)
                      .  +++ |..|+.|++||++.+. ...+.+|...|.+++|+|++++|++|+.|+. |++||+...+.+..+....+...|
T Consensus       198 ~--~~~-~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         198 L--FVS-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             E--EEE-EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCE
T ss_pred             e--eEE-eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeecccccccccccccccCce
Confidence            3  333 4589999999998855 4567889999999999999999999999999 999999999988888766577789


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEE
Q 015650          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (403)
Q Consensus       307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (403)
                      .+++|+|++++|++|+.||.|++||+.+++.                                   +..+++|.+.|+++
T Consensus       274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-----------------------------------~~~~~~H~~~V~~l  318 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADR-----------------------------------AGVLAGHDNRVSCL  318 (340)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEE
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCcE-----------------------------------EEEEcCCCCCEEEE
Confidence            9999999999999999999999999988773                                   44567788999999


Q ss_pred             EeccCCCEEEEEccCCC
Q 015650          387 AFGHQKNTVVILGMDGR  403 (403)
Q Consensus       387 ~fs~d~~~l~~~~~dG~  403 (403)
                      +|+||+++|++|+.||+
T Consensus       319 ~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         319 GVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EECTTSSCEEEEETTSC
T ss_pred             EEeCCCCEEEEEccCCE
Confidence            99999999999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.5e-37  Score=277.15  Aligned_cols=275  Identities=16%  Similarity=0.187  Sum_probs=219.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEec---------------ccCcceeEEEEeeeCCeEEEeeC
Q 015650           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF---------------ERGGGIGVVEMLFRCNILALVGG  147 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~s~  147 (403)
                      +|.+.|+||+|+|||++||+|+|+.|+||++.+++.......               ...+...|.+++|++++.+++++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            699999999999999999999988899999987765432111               02456679999999999999999


Q ss_pred             CCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEe
Q 015650          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (403)
Q Consensus       148 ~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  223 (403)
                      +.|     |.|++||...++.+..+. |...|.++.+++++..++   .++.+++||+++.........+.. ...+.+.
T Consensus       140 ~~d-----g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~  213 (388)
T d1erja_         140 AED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVS  213 (388)
T ss_dssp             ETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEEC
T ss_pred             ccc-----cccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccc-ccccccc
Confidence            999     999999999999988888 899999999999987776   488999999998877776654443 3445555


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEccCCcee--------EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEE-
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK--------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL-  294 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~~~--------~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~-  294 (403)
                      +.... ++++ |+.|+.|++||.+.....        ...+|...|.+++|+|++++|++++.|+. |++||+.+++.. 
T Consensus       214 ~~~~~-~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~  290 (388)
T d1erja_         214 PGDGK-YIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKS  290 (388)
T ss_dssp             STTCC-EEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-------
T ss_pred             CCCCC-eEEE-EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc-EEEEeccCCcccc
Confidence            54333 3443 458999999999875432        23468889999999999999999999999 999999765432 


Q ss_pred             -----------EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccc
Q 015650          295 -----------QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (403)
Q Consensus       295 -----------~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (403)
                                 ....  .|...|.+++|+|++++|++|+.||.|++||+++++.                          
T Consensus       291 ~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--------------------------  342 (388)
T d1erja_         291 DSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--------------------------  342 (388)
T ss_dssp             --------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE--------------------------
T ss_pred             ccccccccceeeecc--cccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE--------------------------
Confidence                       2222  2678899999999999999999999999999998873                          


Q ss_pred             cceeeeeeeeEEEEEeCCCceEEE------eccCCCEEEEEccCCC
Q 015650          364 PKYFSSEWSVAQFRLVEGSPYIVA------FGHQKNTVVILGMDGR  403 (403)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~------fs~d~~~l~~~~~dG~  403 (403)
                               +..+++|.+.|..++      |+||+++|++|+.||+
T Consensus       343 ---------~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~  379 (388)
T d1erja_         343 ---------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  379 (388)
T ss_dssp             ---------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             ---------EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCE
Confidence                     445677888887775      6789999999999984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-35  Score=260.62  Aligned_cols=241  Identities=10%  Similarity=0.189  Sum_probs=211.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ....+|.+.|.+++|+|||++|++|+. +.|++|++..........+. .|...+..+.+++++..+++++.+     +.
T Consensus        91 ~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d-----~~  164 (337)
T d1gxra_          91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSD-----GN  164 (337)
T ss_dssp             EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETT-----SC
T ss_pred             eeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccc-cccccccccccccccccccccccc-----cc
Confidence            345689999999999999999999985 45999999876666556665 688889999999999999999888     99


Q ss_pred             EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      |++|++.+++...... |...|.+++|++++..++   .|+.|++||+++++.+..+. +...+..++++++++.++  +
T Consensus       165 i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~--~  241 (337)
T d1gxra_         165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLA--V  241 (337)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEE--E
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccc--e
Confidence            9999999999888777 899999999999988777   48999999999998887764 677888999999887543  3


Q ss_pred             eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~  313 (403)
                       |+.|+.|++||++.........|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+.   |...|.+++|+|
T Consensus       242 -~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~s~  316 (337)
T d1gxra_         242 -GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISV  316 (337)
T ss_dssp             -EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECT
T ss_pred             -eccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEcc---CCCCEEEEEEeC
Confidence             34789999999999888888899999999999999999999999999 9999999999998877   678999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEee
Q 015650          314 NAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       314 d~~~l~s~~~dg~v~iwd~~  333 (403)
                      ++++|++|+.||+|+|||+-
T Consensus       317 d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         317 DDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEEE
Confidence            99999999999999999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-35  Score=259.21  Aligned_cols=249  Identities=12%  Similarity=0.123  Sum_probs=205.5

Q ss_pred             CCCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        75 ~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      .....++.+|.+.|++++|+|+|++||+|+ |+.|+||++...+......+. .|...|.++.|++++..+++++.+.  
T Consensus        48 ~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~~~~--  124 (311)
T d1nr0a1          48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGR--  124 (311)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCS--
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccc-cccCccccccccccccccccccccc--
Confidence            344456789999999999999999999998 555999999887766656665 6888999999999987776665420  


Q ss_pred             CCceEEEEECCCCceeEEEe-cCCceeEEEEecCceE-EE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII-VV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                       ...+++|++++++.+..+. |...|.+++|+|++.+ ++   .|+.|++||+++++....+..|...+..+.++|+++.
T Consensus       125 -~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~  203 (311)
T d1nr0a1         125 -ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL  203 (311)
T ss_dssp             -SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             -cccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccc
Confidence             1669999999999988888 8899999999999875 44   3899999999999999999999999999999998874


Q ss_pred             EEEEeeCCccCeEEEEEccCCcee-E-------EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTK-F-------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~-~-------~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (403)
                        +++ ++.|+.|++||...+... .       ..+|...|.+++|+|++++|++|+.||. |+|||++++++++++..+
T Consensus       204 --l~~-~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         204 --FAS-TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             --EEE-EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECC
T ss_pred             --ccc-ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEEECC
Confidence              343 347999999999875432 2       2358889999999999999999999999 999999999999998764


Q ss_pred             CC-cccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          301 AD-RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       301 ~~-~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      .. ...+.++.|  ++++|++++.||.|++||.+
T Consensus       280 ~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         280 TRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             CCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            21 234555665  45679999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.4e-35  Score=255.17  Aligned_cols=276  Identities=15%  Similarity=0.116  Sum_probs=212.5

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      .+++.+|.+.|++++|+|||++|++|+.+ .|++||+++++..  +.+...|...|.++.|++++.+++++. |     +
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~h~~~v~~v~~~~~g~~~~~~~-d-----~   76 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN--RVFPDVHATMITGIKTTSKGDLFTVSW-D-----D   76 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--ECSSCSCSSCEEEEEECTTSCEEEEET-T-----T
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCCCCcEEEEEeeccceeecccc-e-----e
Confidence            36789999999999999999999999854 5999999887765  556557888999999999987665554 4     8


Q ss_pred             eEEEEECCCCcee----EEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          157 KVMIWDDHQSRCI----GELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       157 ~i~iwd~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      .+++|+.......    ....+...+.++++++++.+++  .++.+++|+...  .....  .......++++++++.  
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~--  150 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQF--  150 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCE--
T ss_pred             eEEEeccCCcccccccccccccccccccccccccccccccccccccccccccc--ccccc--cccccccccccccccc--
Confidence            9999997654321    1223678899999999998777  688999999543  22222  2345678889988774  


Q ss_pred             EEeeCCccCeEEEEEccCCceeE--EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec-CCCcccEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIY  307 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~v~  307 (403)
                      +++ |+.|+.|++||++++....  ...|...|.+++|+|++++|++++.|+. |++||+.++..+..... ..|...|+
T Consensus       151 l~~-g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~h~~~v~  228 (299)
T d1nr0a2         151 VAV-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVA  228 (299)
T ss_dssp             EEE-EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred             ccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            333 4489999999998866543  4578999999999999999999999999 99999988776544332 23678999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEe-CCCceEE
Q 015650          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIV  386 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  386 (403)
                      +++|+|++++|++|+.||.|++||+++++.....                                 ....+ ...+..+
T Consensus       229 ~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~---------------------------------~~~~~~~~~v~~~  275 (299)
T d1nr0a2         229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII---------------------------------IKGAHAMSSVNSV  275 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE---------------------------------ETTSSTTSCEEEE
T ss_pred             cccccccccceEEEcCCCEEEEEECCCCCcceEE---------------------------------EecCCCCCcEEEE
Confidence            9999999999999999999999999987642111                                 00111 2345555


Q ss_pred             EeccCCCEEEEEccCCC
Q 015650          387 AFGHQKNTVVILGMDGR  403 (403)
Q Consensus       387 ~fs~d~~~l~~~~~dG~  403 (403)
                       +++++++|++|+.||+
T Consensus       276 -~~~~~~~l~s~s~D~~  291 (299)
T d1nr0a2         276 -IWLNETTIVSAGQDSN  291 (299)
T ss_dssp             -EEEETTEEEEEETTSC
T ss_pred             -EECCCCEEEEEeCCCE
Confidence             4567789999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-35  Score=265.11  Aligned_cols=307  Identities=13%  Similarity=0.069  Sum_probs=223.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      +.++|+|++|+|||++||+|+.++ |+||++++++......+. +|...|.++.|+|++.++++++.|     +.|+|||
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd   79 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWT   79 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETT-----SCEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec-CCCCCEEEEEECCCCCEEEEEECC-----CeEEEEe
Confidence            346799999999999999998655 999999887766667776 899999999999999999999999     9999999


Q ss_pred             CCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCceee----eEeeccCCCceeEEEeeCCCeEEEE
Q 015650          163 DHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL----HQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       163 ~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      +.++.....+.   |...|.+++|+|++..++   .|++|++|++......    .....+...+..++|+|++..  ++
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~--l~  157 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL--LA  157 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE--EE
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccc--ee
Confidence            98876554443   788999999999998887   4889999998765432    233456778889999998774  44


Q ss_pred             eeCCccCeEEEEEccCCc-------------------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 015650          233 CPGLQKGQVRVEHYASKR-------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       233 ~~g~~d~~i~v~d~~~~~-------------------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (403)
                      + |+.|+.|++|+.....                   ......|...|.+++|+|+|++|++++.|+. |++||+.+++.
T Consensus       158 s-~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~  235 (371)
T d1k8kc_         158 A-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMA  235 (371)
T ss_dssp             E-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTE
T ss_pred             c-cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeecccc
Confidence            4 4589999999976421                   2334578889999999999999999999999 99999999999


Q ss_pred             EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCC---Ccccccc-ccc--cccccee
Q 015650          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT---LPTSSLS-FIK--GVLPKYF  367 (403)
Q Consensus       294 ~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~--~~~~~~~  367 (403)
                      +..+..  |..+|.+++|+||+++|++| .|+.+++|..+.......+.........   ....... |..  .......
T Consensus       236 ~~~~~~--~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (371)
T d1k8kc_         236 VATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG  312 (371)
T ss_dssp             EEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred             eeeeec--ccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEec
Confidence            999886  66899999999999888765 4788888888765533222211100000   0000000 100  0000000


Q ss_pred             eeeeeeEEEEEeCCCceEEEeccCC----CEEEEEccCCC
Q 015650          368 SSEWSVAQFRLVEGSPYIVAFGHQK----NTVVILGMDGR  403 (403)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~fs~d~----~~l~~~~~dG~  403 (403)
                      ...........|.+.|+.+++.+.+    ..|++++.||+
T Consensus       313 ~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~  352 (371)
T d1k8kc_         313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG  352 (371)
T ss_dssp             -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred             cccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCe
Confidence            0000011112367789999998755    46899999984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-33  Score=245.62  Aligned_cols=241  Identities=13%  Similarity=0.163  Sum_probs=190.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCCCCceEEEEE
Q 015650           87 TLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~i~iwd  162 (403)
                      .+++++|+|+|..|++++.+.  |+.|+...........+.+++...+.+++|+|  ++.++++++.|     |+|+|||
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~D-----g~i~iWd   93 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES-----GKVIVWG   93 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT-----SEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCC-----CCEEEee
Confidence            356889999999999987666  45565443333333455534467899999986  67899999999     9999999


Q ss_pred             CCCCceeE--------EEe-cCCceeEEEEecCceEEE--e---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650          163 DHQSRCIG--------ELS-FRSEVRSVKLRRDRIIVV--L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (403)
Q Consensus       163 ~~~~~~~~--------~~~-~~~~i~~~~~~~~~~~~~--~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (403)
                      +..++...        .+. +..+|.+++|++++..++  .   ++.+++|+..+++.+..+..|...+..++|+++++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccc
Confidence            87654322        223 678899999999998776  2   668999999999999999999999999999998876


Q ss_pred             EEEEeeCCccCeEEEEEccCCceeE----EeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650          229 LVLVCPGLQKGQVRVEHYASKRTKF----IMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (403)
Q Consensus       229 ~~~~~~g~~d~~i~v~d~~~~~~~~----~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (403)
                      ++++  ++.|+.+++||....+...    ...|...|.+++|+|+ +.+|++++.|+. |++||+++++.+..+..  |.
T Consensus       174 ~~~~--~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~~--~~  248 (325)
T d1pgua1         174 RSMT--VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIED--DQ  248 (325)
T ss_dssp             EEEE--EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCB--TT
T ss_pred             eEEE--eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeeccccccccccc--cc
Confidence            5443  3479999999988754322    2457788999999996 689999999999 99999999999999986  44


Q ss_pred             ccEEEEEeC---CCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          304 AEIYSLAFS---SNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       304 ~~v~~l~~s---~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ..+.++.|+   |||++|++++.|+.|+|||+++++.
T Consensus       249 ~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~  285 (325)
T d1pgua1         249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC  285 (325)
T ss_dssp             BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE
Confidence            444444443   6899999999999999999998873

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-31  Score=233.31  Aligned_cols=243  Identities=16%  Similarity=0.268  Sum_probs=212.2

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|...|.+++|+|++.+++++.... +.+|+....+..  ..+. .+...+..+.+++++..+++++.|     
T Consensus        51 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~d-----  122 (317)
T d1vyhc1          51 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--RTMH-GHDHNVSSVSIMPNGDHIVSASRD-----  122 (317)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--ECCC-CCSSCEEEEEECSSSSEEEEEETT-----
T ss_pred             EEEEEeCCCCcEEEEeeecccccccccccccccccccccccccc--cccc-cccccceeeeccCCCceEEeeccC-----
Confidence            3456778999999999999999999988554 889988766554  4444 688889999999999999999988     


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe---
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS---  228 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  228 (403)
                      +.+++||+.+++.+..+. |...+.+++|++++.+++   .|+.|++|++.+++.+..+..+...+..+.++++...   
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  202 (317)
T d1vyhc1         123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI  202 (317)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG
T ss_pred             cceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeecccccee
Confidence            999999999999999988 889999999999999888   4899999999999999999888888888888776432   


Q ss_pred             ---------------EEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650          229 ---------------LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (403)
Q Consensus       229 ---------------~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (403)
                                     .++.+ ++.|+.|++||++++. +..+.+|...|.+++|+|++++|++++.||. |+|||+.+++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~  280 (317)
T d1vyhc1         203 SEATGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKR  280 (317)
T ss_dssp             GGCCSCC-------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSC
T ss_pred             eccccceeeeeccCCceeEe-ccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCCCc
Confidence                           12333 4589999999998855 4667889999999999999999999999999 9999999999


Q ss_pred             EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       293 ~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      ++..+..  |...|++++|+|++++|++|+.||+|+|||
T Consensus       281 ~~~~~~~--h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         281 CMKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCEEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999986  778999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-31  Score=236.73  Aligned_cols=242  Identities=19%  Similarity=0.269  Sum_probs=197.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      .....|...|++++|+|+|++|++|+.++ |++|+....+..  ..+. +|...|..+.+++++..++.++.+     +.
T Consensus       115 ~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~~~~~~~~-----~~  186 (388)
T d1erja_         115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQ-GHEQDIYSLDYFPSGDKLVSGSGD-----RT  186 (388)
T ss_dssp             ----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             ccccCCCCCEEEEEECCCCCcceecccccccccccccccccc--cccc-cccccccccccccccccccccccc-----ee
Confidence            34557888999999999999999998555 999999887765  4444 688899999999998888888888     99


Q ss_pred             EEEEECCCCceeEEEecCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEee-------ccCCCceeEEEeeCC
Q 015650          158 VMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIE-------TIANPKGLCAVSQGV  226 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~  226 (403)
                      +++||..+........+......+.+.+ ++.+++   .|+.|++||++++..+..+.       .|...+..+++++++
T Consensus       187 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  266 (388)
T d1erja_         187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG  266 (388)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             eeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence            9999999988888777666666666655 777776   48999999999887766543       456778899999988


Q ss_pred             CeEEEEeeCCccCeEEEEEccCCc-------------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 015650          227 GSLVLVCPGLQKGQVRVEHYASKR-------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (403)
Q Consensus       227 ~~~~~~~~g~~d~~i~v~d~~~~~-------------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (403)
                      +.  +++ ++.|+.|++||++...             ......|...|.+++|+|++++|++|+.||. |++||++++++
T Consensus       267 ~~--l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~  342 (388)
T d1erja_         267 QS--VVS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNP  342 (388)
T ss_dssp             SE--EEE-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCE
T ss_pred             CE--EEE-EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcE
Confidence            74  343 3489999999987632             2344578899999999999999999999999 99999999999


Q ss_pred             EEEEecCCCcccEEEEE------eCCCCCEEEEEeCCCcEEEEEeec
Q 015650          294 LQEVRRGADRAEIYSLA------FSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       294 ~~~~~~~~~~~~v~~l~------~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      +.++.+  |.+.|.+++      |+|++.+|++|+.||+|+||+++.
T Consensus       343 ~~~l~~--H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         343 LLMLQG--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEEEEC--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEEEeC--CCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            999986  778999987      467999999999999999999964

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-30  Score=228.08  Aligned_cols=277  Identities=18%  Similarity=0.288  Sum_probs=201.5

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      ....++.+|.+.|.+ +++++|++||+|+. +.|+|||+.+++..  ..+. +|...|.++.|+++  .+++++.|    
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~--~~~~-~h~~~V~~v~~~~~--~l~s~s~D----   76 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLV-GHTGGVWSSQMRDN--IIISGSTD----   76 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEE--EECC-CCSSCEEEEEEETT--EEEEEETT----
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEE--EEEe-CCCCCEEEEEeCCC--ccccceec----
Confidence            345678999999865 36678999999985 55999999888765  6776 78999999999987  67777777    


Q ss_pred             CceEEEEECCCCceeEEEe-cCCceeEEEEe---------------------------------------cCceEEE--e
Q 015650          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLR---------------------------------------RDRIIVV--L  192 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~---------------------------------------~~~~~~~--~  192 (403)
                       +.+++|+........... +...+......                                       ....++.  .
T Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d2ovrb2          77 -RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY  155 (342)
T ss_dssp             -SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred             -ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence             899999976654433322 11121111111                                       1112222  3


Q ss_pred             cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCC
Q 015650          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQ  271 (403)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~  271 (403)
                      |+.|++||++..+.+..+..+..  ....+.+++..  +++ ++.||.|++||++... +..+..|...+.++.++  ++
T Consensus       156 d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~--l~s-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~  228 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIH--VVS-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DN  228 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSS--CEEEEEECSSE--EEE-EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TT
T ss_pred             CCeEEEeecccceeeEEEcCccc--ccccccCCCCE--EEE-EeCCCeEEEeecccceeeeEecccccceeEEecC--CC
Confidence            78899999888888877776654  44555666653  343 4589999999999855 56677899999888775  56


Q ss_pred             EEEEEeCCCcEEEEEEcCCCcEEEEEecC-CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCC
Q 015650          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT  350 (403)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  350 (403)
                      +|++++.|+. |++||+...+....+..+ .|...+.++.++  ++++++|+.||.|++||+++++.+..+.        
T Consensus       229 ~l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~--------  297 (342)
T d2ovrb2         229 ILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV--------  297 (342)
T ss_dssp             EEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--------
T ss_pred             EEEEEcCCCE-EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEe--------
Confidence            9999999999 999999999888887653 245677777775  5699999999999999999987311110        


Q ss_pred             CcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                            ......+.+.|+.++|+|++..|++|+.||+
T Consensus       298 ----------------------~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         298 ----------------------TLESGGSGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             ----------------------ECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             ----------------------cccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence                                  0001134567999999999999999999995

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-31  Score=233.40  Aligned_cols=271  Identities=14%  Similarity=0.231  Sum_probs=194.2

Q ss_pred             CCccccCCCCCCe-EEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650           76 PAESTSSSPPPTL-LHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (403)
Q Consensus        76 ~~~~~~~~~~~~i-~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (403)
                      +++.++.+|.+.| +|++|  ++++|++|+++ .|+|||+.+++..  ..+. +|...|.+++|+++. .+++++.|   
T Consensus         3 p~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~--~~l~-~H~~~V~~l~~s~~~-~l~s~s~D---   73 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLS-GHDGGVWALKYAHGG-ILVSGSTD---   73 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEE--EEEE-CCSSCEEEEEEETTT-EEEEEETT---
T ss_pred             CCcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEE--EEEE-CCCCCEEEEEEcCCC-EEEEEecc---
Confidence            3456789998886 66655  67899999855 5999999888765  6676 799999999999876 57778888   


Q ss_pred             CCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcC-------------------------
Q 015650          154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA-------------------------  202 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~-------------------------  202 (403)
                        +.|++|++...+......   +........+.+++.+++   .|+.|++||++                         
T Consensus        74 --~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
T d1nexb2          74 --RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  151 (355)
T ss_dssp             --CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCT
T ss_pred             --cccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccc
Confidence              999999998877665554   122233444555555544   25556666554                         


Q ss_pred             --------------------------------------CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650          203 --------------------------------------DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (403)
Q Consensus       203 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~  244 (403)
                                                            +++.+..+..+...+..+.+++++..++.   ++.|+.|++|
T Consensus       152 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~i~i~  228 (355)
T d1nexb2         152 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS---ASMDTTIRIW  228 (355)
T ss_dssp             TEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE---EETTSCEEEE
T ss_pred             ceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeec---ccccceEEee
Confidence                                                  33333344444445556677777764433   3478999999


Q ss_pred             EccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE-EEeCCCCCEEEEEe
Q 015650          245 HYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS-LAFSSNAQWLAVSS  322 (403)
Q Consensus       245 d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~-l~~s~d~~~l~s~~  322 (403)
                      |.+++. ...+.+|...|.+++|+  +++|++++.||. |++||+.++.......    ...+.+ ..+++++++|++| 
T Consensus       229 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~-i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g-  300 (355)
T d1nexb2         229 DLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSG-  300 (355)
T ss_dssp             ETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSE-EEEEETTTCCEEEEEE----CTTCCCCCEEEECSSEEEEE-
T ss_pred             eccccccccccccccccccccccc--cceeeeeecccc-cccccccccceecccc----cCCceEEEEEcCCCCEEEEE-
Confidence            999855 56678899999999996  469999999999 9999999887665543    234444 4567777777666 


Q ss_pred             CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       323 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                      .||.|+|||+++++.+...                                  +..|.+.|.+++|+|+ ..|++++.||
T Consensus       301 ~d~~i~vwd~~tg~~~~~~----------------------------------~~~~~~~V~~v~~~~~-~~~~~~s~dg  345 (355)
T d1nexb2         301 SENQFNIYNLRSGKLVHAN----------------------------------ILKDADQIWSVNFKGK-TLVAAVEKDG  345 (355)
T ss_dssp             ETTEEEEEETTTCCBCCSC----------------------------------TTTTCSEEEEEEEETT-EEEEEEESSS
T ss_pred             eCCEEEEEECCCCCEEEEE----------------------------------ecCCCCCEEEEEEcCC-eEEEEEECCC
Confidence            4899999999998853221                                  1234567889999987 5778888898


Q ss_pred             C
Q 015650          403 R  403 (403)
Q Consensus       403 ~  403 (403)
                      +
T Consensus       346 ~  346 (355)
T d1nexb2         346 Q  346 (355)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=1.2e-30  Score=234.19  Aligned_cols=227  Identities=15%  Similarity=0.127  Sum_probs=186.3

Q ss_pred             cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc--eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEc
Q 015650          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNF  201 (403)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~  201 (403)
                      ...+|.+++|++++..+++++.+     +.|+|||+.+++  .+..++ |..+|.+++|+|++.+++   .|++|++||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence            34679999999999999999988     999999998775  556666 899999999999999888   4899999999


Q ss_pred             CCceee--eEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----eEEeecCCceEEEEEcCCCCEEE
Q 015650          202 ADLKLL--HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFIMAHDSRIACFALTQDGQLLA  274 (403)
Q Consensus       202 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----~~~~~~~~~i~~~~~sp~g~~l~  274 (403)
                      .++...  ..+..+...+..++|+|+++.++.   |+.|+.|++|++.....     .....|...|.+++|+|++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~---~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAV---GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  157 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEE---EETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccee---ecccCcceeeeeeccccccccccccccccccccccccccccccee
Confidence            876543  344567788999999999875433   34789999999877432     22346888999999999999999


Q ss_pred             EEeCCCcEEEEEEcCCC------------------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          275 TSSTKGTLVRIFNTLDG------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       275 s~~~dg~~i~iwd~~~~------------------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      +|+.|+. |++||....                  +.+....  .|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       158 s~s~D~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~  234 (371)
T d1k8kc_         158 AGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  234 (371)
T ss_dssp             EEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             ccccCcE-EEEEeeccCccccccccccccccccceeeeeecc--CccCcEEEEEeecccccccccccCCcceEEeeeccc
Confidence            9999999 999997543                  2333333  377889999999999999999999999999998876


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                      .                                   +..+..+..++..++|+||+++|++|..
T Consensus       235 ~-----------------------------------~~~~~~~~~~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         235 A-----------------------------------VATLASETLPLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             E-----------------------------------EEEEECSSCCEEEEEEEETTEEEEEETT
T ss_pred             c-----------------------------------eeeeecccccceeeeecCCCCEEEEEcC
Confidence            3                                   4446677788999999999998887663

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.6e-29  Score=213.20  Aligned_cols=275  Identities=13%  Similarity=0.232  Sum_probs=203.3

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      +......|...|+|++|  ||++||+|+. +.|+|||+.+++..  ..+. +|...|.++.|++  .++++++.|     
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~--~~l~-~H~~~V~~v~~~~--~~l~s~s~D-----   74 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--RILT-GHTGSVLCLQYDE--RVIITGSSD-----   74 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--EEEC-CCSSCEEEEECCS--SEEEEEETT-----
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEE--EEEe-cCCCCEeeeeccc--ceeeccccc-----
Confidence            33456778899999765  7899999985 45999999887765  6676 7999999998854  467888888     


Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceee---eEeeccCCCceeEEEeeCCCeEE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      +.|++|++..+....................+.++.  .++.+.+|++......   ..+..+...+..+.+  .....+
T Consensus        75 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~  152 (293)
T d1p22a2          75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIV  152 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--cccccc
Confidence            999999999998877776433333333334444444  5889999999875433   333444444444443  344332


Q ss_pred             EEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650          231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (403)
                        + ++.|+.|++||.++.+ ...+.++...+..+.++  +.+|++++.|+. |++||+++.+.+..+..  +...+.. 
T Consensus       153 --~-~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~v~~-  223 (293)
T d1p22a2         153 --S-ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRC-  223 (293)
T ss_dssp             --E-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEE-
T ss_pred             --c-ccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecccceeeeeecc--cceeeee-
Confidence              2 2478999999999855 45677888888888774  568999999999 99999999999988875  5566665 


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEec
Q 015650          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (403)
Q Consensus       310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs  389 (403)
                       +++++.+|++++.||.|++||+.+........                          ....+..+..|.+.|+.++| 
T Consensus       224 -~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--------------------------~~~~~~~~~~H~~~V~~v~~-  275 (293)
T d1p22a2         224 -IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA--------------------------GTLCLRTLVEHSGRVFRLQF-  275 (293)
T ss_dssp             -EECCSSEEEEEETTSCEEEEEHHHHTSTTSCT--------------------------TTTEEEEECCCSSCCCCEEE-
T ss_pred             -ccccceEEEEEcCCCEEEEEECCCCccccccC--------------------------CceeeEEecCCCCCEEEEEE-
Confidence             45678899999999999999998876432211                          11124456788899999998 


Q ss_pred             cCCCEEEEEccCCC
Q 015650          390 HQKNTVVILGMDGR  403 (403)
Q Consensus       390 ~d~~~l~~~~~dG~  403 (403)
                       |+++|++|+.||+
T Consensus       276 -d~~~l~s~s~Dg~  288 (293)
T d1p22a2         276 -DEFQIVSSSHDDT  288 (293)
T ss_dssp             -CSSCEEECCSSSE
T ss_pred             -cCCEEEEEecCCE
Confidence             6789999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.2e-30  Score=221.45  Aligned_cols=260  Identities=10%  Similarity=0.114  Sum_probs=202.1

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (403)
                      ..++.+|...|++++|+|    |++|+ |+.|++|++.+..       . .|...|.++.+.++.. +++++.|     +
T Consensus         6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-------~-~h~~~V~~~~~~~~~~-~~s~s~D-----~   67 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-------Q-DHSNLIVSLDNSKAQE-YSSISWD-----D   67 (287)
T ss_dssp             EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-------C-CCCSCEEEEECCSTTC-CEEEETT-----T
T ss_pred             eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-------C-CCCCCEEEEEecCCCe-EEEEeec-----c
Confidence            356889999999999987    77777 5559999976421       2 5888999999987765 5667777     8


Q ss_pred             eEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                      ++++|++..      .+....+..+.+++++..++  .++.+.+|+..+++.+..+....   ...+++++++.+++.  
T Consensus        68 ~v~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~--  136 (287)
T d1pgua2          68 TLKVNGITK------HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQNYVAVG--  136 (287)
T ss_dssp             EEEETTEEE------EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS---CEEEEEECSSEEEEE--
T ss_pred             ccccccccc------cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc---eeeeeeccCcceeee--
Confidence            999998643      23456678889999988877  57889999999988888775432   456778887754443  


Q ss_pred             CCccCeEEEEEccCCceeE--EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650          235 GLQKGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (403)
                      +..++.+++|++.......  ...|...+++++|+|++.+|++|+.||. |++||+.+++.+..... .|...|.+++|+
T Consensus       137 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~  214 (287)
T d1pgua2         137 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWA-FRTSKINAISWK  214 (287)
T ss_dssp             ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSC-CCSSCEEEEEEC
T ss_pred             ccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeeccccccccccc-ccccccceeeec
Confidence            3455789999987644322  2357788999999999999999999999 99999998887654332 377899999998


Q ss_pred             CC----------CCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCC
Q 015650          313 SN----------AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS  382 (403)
Q Consensus       313 ~d----------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (403)
                      |+          +.+|++|+.|++|+|||++++...                                  +..+.+|.+.
T Consensus       215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~----------------------------------~~~~~~h~~~  260 (287)
T d1pgua2         215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI----------------------------------IKALNAHKDG  260 (287)
T ss_dssp             CCC------CCSCCEEEEEETTSCEEEEESSCTTCC----------------------------------EEETTSSTTC
T ss_pred             ccccccccccCCCCeeEeecCCCeEEEEECCCCCeE----------------------------------EEEeCCCCCC
Confidence            75          468999999999999999875421                                  2223467789


Q ss_pred             ceEEEeccCCCEEEEEccCCC
Q 015650          383 PYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       383 ~~~~~fs~d~~~l~~~~~dG~  403 (403)
                      |++++|+|++ .|++++.||+
T Consensus       261 V~~v~~~~~~-~l~s~g~D~~  280 (287)
T d1pgua2         261 VNNLLWETPS-TLVSSGADAC  280 (287)
T ss_dssp             EEEEEEEETT-EEEEEETTSC
T ss_pred             eEEEEECCCC-EEEEEECCCe
Confidence            9999999986 5889999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.4e-29  Score=220.05  Aligned_cols=235  Identities=13%  Similarity=0.144  Sum_probs=187.7

Q ss_pred             EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE--ecCeEE
Q 015650          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIF  197 (403)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~d~~i~  197 (403)
                      +.+. +|...|.+++|++++.+|++++.|     |.|++||+.+++.+..+.  |...|.+++|+|++.+++  .|+.++
T Consensus         6 ~~~~-GH~~~V~~l~~s~dg~~l~s~s~D-----g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~   79 (299)
T d1nr0a2           6 QVRY-GHNKAITALSSSADGKTLFSADAE-----GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK   79 (299)
T ss_dssp             EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred             eEcC-CCCCCcEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEE
Confidence            5565 899999999999999999999999     999999999999888875  788999999999998777  599999


Q ss_pred             EEEcCCcee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEE
Q 015650          198 VYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA  274 (403)
Q Consensus       198 i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~  274 (403)
                      +|++.....   ......+...+..++++++++.+  +. + .++.+++|+....  .. ......+.+++|+|++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~--~~-~-~~~~i~~~~~~~~--~~-~~~~~~~~~~~~s~~~~~l~  152 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA--VA-A-CYKHIAIYSHGKL--TE-VPISYNSSCVALSNDKQFVA  152 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE--EE-E-ESSEEEEEETTEE--EE-EECSSCEEEEEECTTSCEEE
T ss_pred             EeccCCccccccccccccccccccccccccccccc--cc-c-ccccccccccccc--cc-cccccccccccccccccccc
Confidence            999865322   12223455667788899887643  22 2 4678999985432  11 23445678999999999999


Q ss_pred             EEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (403)
Q Consensus       275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (403)
                      +|+.|+. |++||+++++....... .|...|++++|+|++++|++++.|+.|++||+.++......             
T Consensus       153 ~g~~dg~-i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-------------  217 (299)
T d1nr0a2         153 VGGQDSK-VHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-------------  217 (299)
T ss_dssp             EEETTSE-EEEEEEETTEEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC-------------
T ss_pred             ccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-------------
Confidence            9999999 99999988776543322 27789999999999999999999999999999987632111             


Q ss_pred             ccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                         ..+..|...+++++|+|++++|++|+.||+
T Consensus       218 -------------------~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         218 -------------------NSWTFHTAKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             -------------------CCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             -------------------ccccccccccccccccccccceEEEcCCCE
Confidence                               113456778999999999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-29  Score=221.82  Aligned_cols=244  Identities=13%  Similarity=0.155  Sum_probs=186.3

Q ss_pred             ccCCC-CCCeEEEEEcC--CCCEEEEEcC-CcEEEEEcCCCee------EEEEecccCcceeEEEEeeeCCeEEEee--C
Q 015650           80 TSSSP-PPTLLHISFNQ--DHGCFAAGTD-HGFRIYNCDPFRE------IFRRDFERGGGIGVVEMLFRCNILALVG--G  147 (403)
Q Consensus        80 ~~~~~-~~~i~~i~~s~--d~~~l~~~~~-~~i~iw~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~s--~  147 (403)
                      .+.+| ...|++++|+|  +|++|++|+. +.|+||++...+.      .....+. .+...|.++.|++++..++.  .
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~  135 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGE  135 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEEC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCCccceeec
Confidence            34566 56799999998  5789999985 4599999854322      1112232 46778999999998766554  4


Q ss_pred             CCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceE-EE---ecCeEEEEEcCCceeeeEee---ccCCCcee
Q 015650          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII-VV---LEQKIFVYNFADLKLLHQIE---TIANPKGL  219 (403)
Q Consensus       148 ~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~~---~d~~i~i~d~~~~~~~~~~~---~~~~~~~~  219 (403)
                      +.+     +.+++|+..+++.+..+. |...|.+++|+|++.. ++   .|+.|++||+.+++....+.   .+...+..
T Consensus       136 ~~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~  210 (325)
T d1pgua1         136 GRD-----NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  210 (325)
T ss_dssp             CSS-----CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             ccc-----ceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEE
Confidence            445     789999999999999988 8999999999998754 33   38999999998877665553   45667889


Q ss_pred             EEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEc---CCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALT---QDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~s---p~g~~l~s~~~dg~~i~iwd~~~~~~~~  295 (403)
                      ++|+|+...+ +++ ++.|+.|++||+++++ +..+.+|...+.++.|+   |+|++|++++.|+. |+|||++++++++
T Consensus       211 v~~~pd~~~~-l~s-~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~  287 (325)
T d1pgua1         211 VEFSPDSGEF-VIT-VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQ  287 (325)
T ss_dssp             EEECSTTCCE-EEE-EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEE
T ss_pred             eeecccccee-ccc-cccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEE
Confidence            9999976554 343 3479999999998865 45677788777666655   78999999999999 9999999999999


Q ss_pred             EEecCCCcccEEEEEeCCC-CCEEEEEeCCCcEEEEEe
Q 015650          296 EVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       296 ~~~~~~~~~~v~~l~~s~d-~~~l~s~~~dg~v~iwd~  332 (403)
                      .+..+.+...+..+++.+. +.+|++++.||.|++||+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9887655444444444332 347899999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-29  Score=220.82  Aligned_cols=277  Identities=14%  Similarity=0.067  Sum_probs=196.3

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeE--EEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP  154 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~  154 (403)
                      .+..+|.+.|++|+|+|++++||+|+ |+.|+|||++.....  +...+  +|...|.+++|+++ +..+++++.|    
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~--~h~~~V~~v~f~~~~~~~l~sg~~d----   78 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQ----   78 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETT----
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEec--CCCCCEEEEEEeCCCCCEEEEcccc----
Confidence            46788999999999999999999998 555999999765432  22333  48889999999875 6788899888    


Q ss_pred             CceEEEEECCCCceeEEEe-c-CCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEee----cc--CCCceeEEEe
Q 015650          155 LNKVMIWDDHQSRCIGELS-F-RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE----TI--ANPKGLCAVS  223 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~----~~--~~~~~~~~~~  223 (403)
                       +.|++|++..+....... + ........+.++...++   .++++++||++.+.......    .+  ........+.
T Consensus        79 -~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          79 -GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             -SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             -cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence             999999999887776665 3 33334444555544444   48999999987654332221    11  2223455667


Q ss_pred             eCCCeEEEEeeCCccCeEEEEEccCCce----eEEeecCCceEEEEEc-CCCCEEEEEeCCCcEEEEEEcCCCcE-----
Q 015650          224 QGVGSLVLVCPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGTL-----  293 (403)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~~----~~~~~~~~~i~~~~~s-p~g~~l~s~~~dg~~i~iwd~~~~~~-----  293 (403)
                      +.++.++..   +.|+.|++||++....    .....+...+.+..+. .++..+++++.||. +.+|+......     
T Consensus       158 ~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         158 TNSSRLIVG---MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             ECSSEEEEE---ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTCT
T ss_pred             ccCCceeee---cCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-EEEEEecCCcceeecc
Confidence            776654433   4789999999987432    2233444555665554 47789999999999 99998754321     


Q ss_pred             -EEEEe-------cCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccc
Q 015650          294 -LQEVR-------RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (403)
Q Consensus       294 -~~~~~-------~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (403)
                       ...+.       ...|...|++|+|+|++++|++|+.||.|+|||+++++.+                           
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l---------------------------  286 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI---------------------------  286 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE---------------------------
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE---------------------------
Confidence             11111       1124567999999999999999999999999999987731                           


Q ss_pred             eeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (403)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG  402 (403)
                              .++. ......+++|+|+++.|++|+.|+
T Consensus       287 --------~~~~-~~~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         287 --------KNFA-KFNEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             --------EECC-CCSSSEEEEEEECSSEEEEEEECT
T ss_pred             --------EEec-CCCCCEEEEEEeCCCEEEEEEcCC
Confidence                    1111 123566789999999999998886

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.6e-29  Score=227.16  Aligned_cols=255  Identities=11%  Similarity=0.194  Sum_probs=178.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeE-----EEEecccCcceeE------EEEeee-CCeEEEe
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI-----FRRDFERGGGIGV------VEMLFR-CNILALV  145 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~-----~~~~~~~~~~~~v------~~~~~~-~~~~~~~  145 (403)
                      ....+|.+.|.++++++  ++|++++ |+.|+||+..+.+..     .....  .+...+      ..+... .+...++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeee--eccCCceEeeeEeeeccCCCCCcEEE
Confidence            56789999999999865  5888887 555999997543211     11111  122221      112222 2345677


Q ss_pred             eCCCCCCCCCceEEEEECCCCceeEEE-----e------cCCceeEEEEecCc-----eEEE---ecCeEEEEEcCCce-
Q 015650          146 GGGPDPQYPLNKVMIWDDHQSRCIGEL-----S------FRSEVRSVKLRRDR-----IIVV---LEQKIFVYNFADLK-  205 (403)
Q Consensus       146 s~~~d~~~~~~~i~iwd~~~~~~~~~~-----~------~~~~i~~~~~~~~~-----~~~~---~d~~i~i~d~~~~~-  205 (403)
                      +++.|     |.|++|++........+     .      +...+..++|.++.     .+++   .|+++++|++.... 
T Consensus        84 s~~~d-----g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          84 TTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEeCC-----CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            88888     99999997654322111     1      34567778887753     4444   48999999985321 


Q ss_pred             --------------e---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-------eEEeecCCce
Q 015650          206 --------------L---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-------KFIMAHDSRI  261 (403)
Q Consensus       206 --------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-------~~~~~~~~~i  261 (403)
                                    .   ......+...+.++++++++   ++++ |+.|+.|++||+.+++.       ..+.+|...|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~las-gs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V  234 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  234 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC---EEEE-EeCCCcEEEEeecccccccccccccccccccceE
Confidence                          0   11112233456778888875   4554 56899999999987543       2345789999


Q ss_pred             EEEEEcCCCCEEEEEeCCCc--EEEEEEcCCCcEEEEEec-----------CCCcccEEEEEeCCCCCEEEEEeCCCcEE
Q 015650          262 ACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRR-----------GADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~l~~s~d~~~l~s~~~dg~v~  328 (403)
                      .+++|+|+|++|++|+.|++  .|++||+++++++..+..           ..|...|++|+|+||+++|++++.|++|+
T Consensus       235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~  314 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  314 (393)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE
Confidence            99999999999999998873  289999999999888752           13778999999999999999999999999


Q ss_pred             EEEeecCCCCCCCCCCCC
Q 015650          329 VFNLKVNSGSARSEPRST  346 (403)
Q Consensus       329 iwd~~~~~~~~~~~~~~~  346 (403)
                      |||+++++.+..+.+|..
T Consensus       315 vWd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         315 FWDVKTKERITTLNMHCD  332 (393)
T ss_dssp             EEETTTTEEEEEEECCGG
T ss_pred             EEECCCCCEEEEECCcCC
Confidence            999999987666655544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=8.1e-28  Score=212.01  Aligned_cols=241  Identities=12%  Similarity=0.140  Sum_probs=194.6

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCee--EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           78 ESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      ...+..|...|.+++|+|++.++++|+. +.+++|+......  .....+. +|...........+........ +    
T Consensus        90 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~----  163 (340)
T d1tbga_          90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVTSSG-D----  163 (340)
T ss_dssp             EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC-CCSSCEEEEEEEETTEEEEEET-T----
T ss_pred             EEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecc-cccccccccccccccccccccc-c----
Confidence            3556789999999999999999999985 4599999754332  2224444 4555555555555554444443 3    


Q ss_pred             CceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                       .....+............ +...+....+.+.+.+++   .|+.|++||+++++.+..+..|...+..++|+|+++.  
T Consensus       164 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~--  240 (340)
T d1tbga_         164 -TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--  240 (340)
T ss_dssp             -TEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--
T ss_pred             -ccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCE--
Confidence             678888877776665555 788889999999888777   4899999999999999999999999999999998874  


Q ss_pred             EEeeCCccCeEEEEEccCCceeEE---eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~~---~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      +++ |+.|+.|++||++.......   ..+...|.+++|+|++++|++|+.||. |+|||+.+++++..+.+  |...|+
T Consensus       241 l~s-~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--H~~~V~  316 (340)
T d1tbga_         241 FAT-GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVS  316 (340)
T ss_dssp             EEE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEE
T ss_pred             EEE-EeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECCCCcEEEEEcC--CCCCEE
Confidence            443 34899999999998654332   346678999999999999999999999 99999999999999986  778999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          308 SLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       308 ~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      +++|+|++++|++|+.||.|+|||
T Consensus       317 ~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         317 CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.2e-28  Score=219.51  Aligned_cols=192  Identities=10%  Similarity=-0.043  Sum_probs=161.1

Q ss_pred             EEEEcC-CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650           90 HISFNQ-DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        90 ~i~~s~-d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~  168 (403)
                      .-.||| ||+++|+++.+.|++|++..+...   .+  .|...+.++.|+|++..++.++.+.   ...|++||.++++.
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~---~~--~~~~~v~~~~~spDg~~l~~~~~~~---g~~v~v~d~~~~~~   78 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---KV--PEPLRIRYVRRGGDTKVAFIHGTRE---GDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSSBEE---EC--SCCSCEEEEEECSSSEEEEEEEETT---EEEEEEEETTTCCE
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCCcEE---Ec--cCCCCEEEEEECCCCCEEEEEEcCC---CCEEEEEECCCCcE
Confidence            467999 999999999888999999776543   34  4788899999999998877654330   03799999998887


Q ss_pred             eEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe-------eCCcc
Q 015650          169 IGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC-------PGLQK  238 (403)
Q Consensus       169 ~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~d  238 (403)
                      .....|...|.+++|+||+.+++   .++.+++|++.+++....+..+...+..++|+|+++.+++..       .+..+
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccc
Confidence            76666999999999999999888   488999999999998888888888899999999998665443       23456


Q ss_pred             CeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (403)
Q Consensus       239 ~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (403)
                      +.+++||..+++...+..+...+..++|+|||++|++++.++. +++||...
T Consensus       159 ~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~  209 (360)
T d1k32a3         159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVV  209 (360)
T ss_dssp             EEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSS
T ss_pred             cceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCc-eEcccccc
Confidence            7899999999888888888889999999999999999999999 99998654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.1e-26  Score=201.20  Aligned_cols=240  Identities=16%  Similarity=0.256  Sum_probs=177.6

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ....+.+|.+.|++++|+|++ +|++|+ |+.|++|++...+........ .+........+.++...+++++.|     
T Consensus        45 ~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d-----  117 (355)
T d1nexb2          45 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH-NSTVRCLDIVEYKNIKYIVTGSRD-----  117 (355)
T ss_dssp             EEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEEEEETTEEEEEEEETT-----
T ss_pred             EEEEEECCCCCEEEEEEcCCC-EEEEEecccccccccccccccccccccc-cccccccccccccccceeeeecCC-----
Confidence            345678899999999999865 666666 666999999887766544433 445556666677777777777777     


Q ss_pred             ceEEEEECCCC---------------------------------------------------------------ceeEEE
Q 015650          156 NKVMIWDDHQS---------------------------------------------------------------RCIGEL  172 (403)
Q Consensus       156 ~~i~iwd~~~~---------------------------------------------------------------~~~~~~  172 (403)
                      +.|++||+.++                                                               +.+..+
T Consensus       118 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  197 (355)
T d1nexb2         118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  197 (355)
T ss_dssp             SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeee
Confidence            77777775432                                                               222233


Q ss_pred             e-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC
Q 015650          173 S-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (403)
Q Consensus       173 ~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~  248 (403)
                      . +...+.++.+++++..++   .|+.|++||++++..+..+..|...+..+++++  +  ++++ |+.||.|++||+++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~--~l~~-~~~dg~i~iwd~~~  272 (355)
T d1nexb2         198 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K--FLVS-AAADGSIRGWDAND  272 (355)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--S--EEEE-ECTTSEEEEEETTT
T ss_pred             eccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--c--eeee-eecccccccccccc
Confidence            3 445667788888877776   489999999999999999999999998888764  3  3444 45899999999987


Q ss_pred             CceeEEeecCCceEEE-EEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          249 KRTKFIMAHDSRIACF-ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       249 ~~~~~~~~~~~~i~~~-~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                      ... .+..|...+.++ .+++++++|++| .|+. |+|||+++++++.....+ |...|++++|+|+ .++++++.||.+
T Consensus       273 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~-i~vwd~~tg~~~~~~~~~-~~~~V~~v~~~~~-~~~~~~s~dg~~  347 (355)
T d1nexb2         273 YSR-KFSYHHTNLSAITTFYVSDNILVSG-SENQ-FNIYNLRSGKLVHANILK-DADQIWSVNFKGK-TLVAAVEKDGQS  347 (355)
T ss_dssp             CCE-EEEEECTTCCCCCEEEECSSEEEEE-ETTE-EEEEETTTCCBCCSCTTT-TCSEEEEEEEETT-EEEEEEESSSCE
T ss_pred             cce-ecccccCCceEEEEEcCCCCEEEEE-eCCE-EEEEECCCCCEEEEEecC-CCCCEEEEEEcCC-eEEEEEECCCcE
Confidence            654 345566666555 567788877665 4888 999999999987644332 7789999999986 577888999997


Q ss_pred             EEEEee
Q 015650          328 HVFNLK  333 (403)
Q Consensus       328 ~iwd~~  333 (403)
                      +||.++
T Consensus       348 ~l~~~d  353 (355)
T d1nexb2         348 FLEILD  353 (355)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-23  Score=184.74  Aligned_cols=238  Identities=20%  Similarity=0.323  Sum_probs=171.9

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeee-----------------
Q 015650           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR-----------------  138 (403)
Q Consensus        77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------------  138 (403)
                      ....+.+|...|.+++|+++  +|++|+ |+.+++|+............   +...+......                 
T Consensus        49 ~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~~~~  123 (342)
T d2ovrb2          49 CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYG---HTSTVRCMHLHEKRVVSGSRDATLRVWD  123 (342)
T ss_dssp             EEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             EEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccc---cceeEeeeecccccccccccceeEEEee
Confidence            44567899999999999875  888887 55599999876554332211   11111111111                 


Q ss_pred             ---------------------CCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ec
Q 015650          139 ---------------------CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LE  193 (403)
Q Consensus       139 ---------------------~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d  193 (403)
                                           .....++.++.+     +.|++||....+.+..+. |...+..+.+  ++.+++   .|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d  196 (342)
T d2ovrb2         124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLD  196 (342)
T ss_dssp             SSSCCEEEEEECCSSCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETT
T ss_pred             cccccceeeeecccccceeeccccceeeeecCC-----CeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCC
Confidence                                 111224445555     889999988888887777 6655555554  555555   49


Q ss_pred             CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEe---ecCCceEEEEEcCC
Q 015650          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM---AHDSRIACFALTQD  269 (403)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~---~~~~~i~~~~~sp~  269 (403)
                      +.|++||++.++.+..+..|...+..+.++  ++  ++++ ++.|+.|++||+...+. ..+.   .|...+.++.+  +
T Consensus       197 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~  269 (342)
T d2ovrb2         197 TSIRVWDVETGNCIHTLTGHQSLTSGMELK--DN--ILVS-GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--N  269 (342)
T ss_dssp             SCEEEEETTTCCEEEEECCCCSCEEEEEEE--TT--EEEE-EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--C
T ss_pred             CeEEEeecccceeeeEecccccceeEEecC--CC--EEEE-EcCCCEEEEEecccccccccccccceeeeceeeccc--C
Confidence            999999999999999988888776665554  44  3444 45899999999988554 3343   35566777766  5


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCcEEEEEec---CCCcccEEEEEeCCCCCEEEEEeCCCc----EEEEEeec
Q 015650          270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRR---GADRAEIYSLAFSSNAQWLAVSSDKGT----VHVFNLKV  334 (403)
Q Consensus       270 g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~s~d~~~l~s~~~dg~----v~iwd~~~  334 (403)
                      ++++++|+.||. |+|||++++++++.+..   ..|...|++++|+|++.+|++|+.||+    |++||++.
T Consensus       270 ~~~~~s~s~Dg~-i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         270 KNFVITSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             SSEEEEEETTSE-EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCeeEEEcCCCE-EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            679999999999 99999999999988763   235678999999999999999999985    99999874

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.8e-24  Score=185.00  Aligned_cols=227  Identities=13%  Similarity=0.189  Sum_probs=173.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (403)
Q Consensus        81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i  160 (403)
                      ..+|...|.++++++++.++..+.|+.+++|++..      ..+    ...+..+.+.+++..++.+..      +.+.+
T Consensus        42 ~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~  105 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK------HEF----GSQPKVASANNDGFTAVLTND------DDLLI  105 (287)
T ss_dssp             ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEE------EEC----SSCEEEEEECSSSEEEEEETT------SEEEE
T ss_pred             CCCCCCCEEEEEecCCCeEEEEeeccccccccccc------ccc----ccceeeeeeccCCceEEEeec------cccee
Confidence            45799999999999877665555588899998642      122    233556677888887777665      57899


Q ss_pred             EECCCCceeEEEecCCceeEEEEecCceEEE---e-cCeEEEEEcCCceeeeEee-ccCCCceeEEEeeCCCeEEEEeeC
Q 015650          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---L-EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       161 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      |+..+++.+..+.+...+.++  ++++..++   . ++.+++|++...+....+. .+...+..++|+|++..  +++ |
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~-g  180 (287)
T d1pgua2         106 LQSFTGDIIKSVRLNSPGSAV--SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY--IAA-G  180 (287)
T ss_dssp             EETTTCCEEEEEECSSCEEEE--EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE--EEE-E
T ss_pred             eeccceeeeeeccccceeeee--eccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccc--ccc-c
Confidence            999999999888866665554  44444443   2 3579999998766555543 35677889999999874  343 4


Q ss_pred             CccCeEEEEEccCCcee--EEeecCCceEEEEEcCC----------CCEEEEEeCCCcEEEEEEcCC-CcEEEEEecCCC
Q 015650          236 LQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQD----------GQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGAD  302 (403)
Q Consensus       236 ~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~----------g~~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~  302 (403)
                      +.||.|++||+......  .+..|...|.+++|+|+          +.+|++|+.|+. |+|||+++ .+.+..+.+  |
T Consensus       181 ~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~~~--h  257 (287)
T d1pgua2         181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNA--H  257 (287)
T ss_dssp             ETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTS--S
T ss_pred             cccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEeCC--C
Confidence            58999999999986654  35689999999999874          568999999999 99999977 445554443  7


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~  332 (403)
                      ...|++++|+|++ .|++++.||.|++|++
T Consensus       258 ~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         258 KDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            8899999999986 5889999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=9.8e-25  Score=196.81  Aligned_cols=246  Identities=15%  Similarity=0.166  Sum_probs=166.6

Q ss_pred             cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce-------eEEEecCCceeEEEE------ec-CceEEE
Q 015650          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC-------IGELSFRSEVRSVKL------RR-DRIIVV  191 (403)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~-------~~~~~~~~~i~~~~~------~~-~~~~~~  191 (403)
                      .+|...|.+++++++  ++++++.|     ++|+|||..+.+.       .....+...+..+..      .. ++.+++
T Consensus        11 ~~H~~~I~~v~~~~~--~l~S~S~D-----~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_          11 KAHDADIFSVSACNS--FTVSCSGD-----GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             SCSSSCEEEEEECSS--EEEEEETT-----SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             CcccCccEEEEEeCC--EEEEEECC-----CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            489999999998765  56777778     9999999766531       222224444333322      11 223444


Q ss_pred             ---ecCeEEEEEcCCceeeeEe----------eccCCCceeEEEeeCCC---eEEEEeeCCccCeEEEEEccCCc-----
Q 015650          192 ---LEQKIFVYNFADLKLLHQI----------ETIANPKGLCAVSQGVG---SLVLVCPGLQKGQVRVEHYASKR-----  250 (403)
Q Consensus       192 ---~d~~i~i~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~v~d~~~~~-----  250 (403)
                         .||.|++|++........+          ..+...+..+++.++..   ..++++ ++.|+.+++|++....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-TDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-EETTSCEEEEEEESSSSHHHH
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEE-EcCCCcEEEEEeecCCcccce
Confidence               3999999998654322111          11233455677776543   233444 3479999999985311     


Q ss_pred             -------ee-------EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC----CCcccEEEEEeC
Q 015650          251 -------TK-------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG----ADRAEIYSLAFS  312 (403)
Q Consensus       251 -------~~-------~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~----~~~~~v~~l~~s  312 (403)
                             ..       ....+...+.+++|+|++ +|++|+.|+. |+|||+.+++++..+...    .|...|++++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~-i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-VQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCc-EEEEeecccccccccccccccccccceEEEcccc
Confidence                   01       112345568999999998 8899999999 999999999988776532    367899999999


Q ss_pred             CCCCEEEEEeCCCc---EEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEec
Q 015650          313 SNAQWLAVSSDKGT---VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (403)
Q Consensus       313 ~d~~~l~s~~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs  389 (403)
                      |||++|++|+.|++   |++||+++++....+...                      .........+.+|.+.|++|+|+
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~----------------------~~~~~~~~~~~gH~~~V~~l~fs  298 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP----------------------THSSQASLGEFAHSSWVMSLSFN  298 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------------------------------CCBSBSSCEEEEEEC
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccc----------------------cccccceeeeecccCceeeeccC
Confidence            99999999998874   899999988753222100                      00001122245788899999999


Q ss_pred             cCCCEEEEEccCCC
Q 015650          390 HQKNTVVILGMDGR  403 (403)
Q Consensus       390 ~d~~~l~~~~~dG~  403 (403)
                      ||+++|++|+.||+
T Consensus       299 pd~~~l~S~s~D~~  312 (393)
T d1sq9a_         299 DSGETLCSAGWDGK  312 (393)
T ss_dssp             SSSSEEEEEETTSE
T ss_pred             CCCCeeEEECCCCE
Confidence            99999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.1e-24  Score=191.59  Aligned_cols=240  Identities=13%  Similarity=0.088  Sum_probs=180.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (403)
                      .+|...|.+++|+|||++|++++ +++  |++|+.++++..   .+. .|...+..+.|++++..+++++.+     +.+
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---~~~-~~~~~v~~~~~spdg~~l~~~~~~-----~~~  109 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---KFE-ENLGNVFAMGVDRNGKFAVVANDR-----FEI  109 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---ECC-CCCCSEEEEEECTTSSEEEEEETT-----SEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---Eee-CCCceEEeeeecccccccceeccc-----ccc
Confidence            36889999999999999988765 543  999999876543   343 588899999999999999999988     999


Q ss_pred             EEEECCCCceeEEEe-cCCceeEEEEecCceEEEe-------------cCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (403)
                      ++|++.+++....+. +...+.+++|+|||.+++.             ++.+++||+.+++..... .+......+++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~sp  188 (360)
T d1k32a3         110 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA  188 (360)
T ss_dssp             EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECT
T ss_pred             ccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccC
Confidence            999999999888888 7888999999999998871             346999999887665443 4556667889999


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccCCc--------eeEEee------------------------------------cCCc
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYASKR--------TKFIMA------------------------------------HDSR  260 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~~~--------~~~~~~------------------------------------~~~~  260 (403)
                      +++.+++.   +.++.+.+|+.....        ...+..                                    ..+.
T Consensus       189 dg~~l~~~---s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (360)
T d1k32a3         189 DSKNLYYL---SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD  265 (360)
T ss_dssp             TSCEEEEE---ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC
T ss_pred             CCCEEEEE---eCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCc
Confidence            98865543   367888888754311        001100                                    1112


Q ss_pred             eEEEEEcCCCC-------------EEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          261 IACFALTQDGQ-------------LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       261 i~~~~~sp~g~-------------~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                      ...+...+++.             ++++++.++. |++||+.+++.. .     +.+.|.+++|+|||++|++++.||.|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~-~-----~~~~v~~~~~SpDG~~l~~~~~Dg~i  338 (360)
T d1k32a3         266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVT-E-----VKNNLTDLRLSADRKTVMVRKDDGKI  338 (360)
T ss_dssp             EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEE-EEEEETTTCCEE-E-----EEEEEEEEEECTTSCEEEEEETTSCE
T ss_pred             eeEeeecCCCceEEEEEecCCCeeEEEecCCCCE-EEEEECCCCeEE-E-----ecCCcCEEEECCCCCEEEEEECCCeE
Confidence            22333333222             3445556777 999999887653 2     23468999999999999999999999


Q ss_pred             EEEEeecCCCCCCC
Q 015650          328 HVFNLKVNSGSARS  341 (403)
Q Consensus       328 ~iwd~~~~~~~~~~  341 (403)
                      ++||+++++.+.++
T Consensus       339 ~v~d~~~~~~~~~~  352 (360)
T d1k32a3         339 YTFPLEKPEDERTV  352 (360)
T ss_dssp             EEEESSCTTSCEEC
T ss_pred             EEEECCCCCcceEE
Confidence            99999999875544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-23  Score=177.45  Aligned_cols=234  Identities=14%  Similarity=0.274  Sum_probs=172.0

Q ss_pred             CCCCccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650           74 PSPAESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (403)
Q Consensus        74 ~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (403)
                      ......++.+|.+.|++++|  ++++|++|+.+ .|++|++..+........   .............  .++++..+  
T Consensus        44 ~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~--  114 (293)
T d1p22a2          44 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH---HCEAVLHLRFNNG--MMVTCSKD--  114 (293)
T ss_dssp             SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC---CCSCEEEEECCTT--EEEEEETT--
T ss_pred             CCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccc---ccccccccccccc--ceeecccc--
Confidence            33445677899999999987  67899999854 599999988776543322   3333333333333  33444444  


Q ss_pred             CCCceEEEEECCCCceeEE---Ee-cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          153 YPLNKVMIWDDHQSRCIGE---LS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       153 ~~~~~i~iwd~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                         +.+.+|+.........   +. |...+..+.+.++..... .|+.|++||+++++.+..+..+...+..+.+  ++.
T Consensus       115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~  189 (293)
T d1p22a2         115 ---RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDR  189 (293)
T ss_dssp             ---SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETT
T ss_pred             ---cceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccC--CCC
Confidence               8999999887754332   23 778888888888776666 5999999999999999988877766555544  444


Q ss_pred             eEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC---------CcEEEEE
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD---------GTLLQEV  297 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~---------~~~~~~~  297 (403)
                        ++++ +..|+.|++||+++... .....|...+..  +++++.+|++++.||. |++||+..         ..++..+
T Consensus       190 --~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~  263 (293)
T d1p22a2         190 --LVVS-GSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTL  263 (293)
T ss_dssp             --EEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred             --eEEE-ecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCE-EEEEECCCCccccccCCceeeEEe
Confidence              3443 45899999999998554 455667777765  4568899999999999 99999743         3466777


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (403)
Q Consensus       298 ~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd  331 (403)
                      ..  |.+.|++++|  ++++|++++.||+|+|||
T Consensus       264 ~~--H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         264 VE--HSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CC--CSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             cC--CCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            75  7789999999  467899999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=4.9e-22  Score=171.66  Aligned_cols=251  Identities=15%  Similarity=0.112  Sum_probs=193.2

Q ss_pred             EEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEECCCCceeEEEecCCce
Q 015650          101 AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV  178 (403)
Q Consensus       101 ~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i  178 (403)
                      +++. ++.|.|||+++++.+  ..+.  .......+++++++.++ +++..+     +.|++||+.+++.+..+.....+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~--~~i~--~g~~p~~va~spdG~~l~v~~~~~-----~~i~v~d~~t~~~~~~~~~~~~~   76 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVT--ATIP--VGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGSSP   76 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEECCCCEEEEEECCCCeEE--EEEE--CCCCceEEEEeCCCCEEEEEECCC-----CEEEEEECCCCceeeeeeccccc
Confidence            3444 556999999988765  4554  23456789999998755 566666     89999999999999999866678


Q ss_pred             eEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE
Q 015650          179 RSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI  254 (403)
Q Consensus       179 ~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~  254 (403)
                      ..+.+++++..++    .++.+.+|+..+++....+..+ .....+++++++..+++..  ..++.+.+|+..+......
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~--~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTN--NGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEE
T ss_pred             cccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeee--ccccceeeeeccccceeee
Confidence            9999999987665    3678999999999888887654 4457788999988765543  5788999999999776666


Q ss_pred             eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe---CCCcEEEEE
Q 015650          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFN  331 (403)
Q Consensus       255 ~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~---~dg~v~iwd  331 (403)
                      ..+...+..+.++|+++++++++.+...+.+|+....+....+.   ....+..++|++++..++++.   .++.|++||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         154 VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             cccCCCceEEEeeccccceeeecccccccccccccceeeeeccc---ccCCcceeeccccccccccccccceeeeeeeee
Confidence            66667789999999999998888765537888887777777776   346688999999999887654   346899999


Q ss_pred             eecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEE-EEccCC
Q 015650          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV-ILGMDG  402 (403)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~-~~~~dG  402 (403)
                      +.+++.                                   ...+.. ...+..++|+|||++|+ +++.||
T Consensus       231 ~~t~~~-----------------------------------~~~~~~-~~~~~~va~spdg~~l~va~~~~~  266 (301)
T d1l0qa2         231 TGTNKI-----------------------------------TARIPV-GPDPAGIAVTPDGKKVYVALSFCN  266 (301)
T ss_dssp             TTTTEE-----------------------------------EEEEEC-CSSEEEEEECTTSSEEEEEETTTT
T ss_pred             cCCCeE-----------------------------------EEEEcC-CCCEEEEEEeCCCCEEEEEECCCC
Confidence            988772                                   112222 34678899999999885 555565

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=5.5e-22  Score=171.31  Aligned_cols=236  Identities=11%  Similarity=0.067  Sum_probs=187.8

Q ss_pred             CCeEEEEEcCCCCEEE-EEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCCCCceEEEEE
Q 015650           86 PTLLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWD  162 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~-~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~i~iwd  162 (403)
                      ..+..++|+|||++|+ ++. ++.|++||+.+.+..  ..+.  .......+.+++++. .++++..+     +.+.+|+
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  102 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--ATVP--AGSSPQGVAVSPDGKQVYVTNMAS-----STLSVID  102 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee--eeee--cccccccccccccccccccccccc-----ceeeecc
Confidence            4578999999999875 444 455999999988766  4454  223467788888765 44555556     8999999


Q ss_pred             CCCCceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCcc
Q 015650          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (403)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (403)
                      ..+++....+.+......+.++|++..++    .++.+.+|+..+++.+..+..+ .....+.+++++..++++.  ...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~  179 (301)
T d1l0qa2         103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVAN--FDS  179 (301)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEE--TTT
T ss_pred             cccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeec--ccc
Confidence            99999999998888889999999998776    3778999999999888877654 3457788999888766654  456


Q ss_pred             CeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (403)
Q Consensus       239 ~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~  315 (403)
                      +.+.+|+...............+..++|+++++.++.++.   ++. |++||+.+++.+..+..   ...+.+++|+|||
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~-v~v~D~~t~~~~~~~~~---~~~~~~va~spdg  255 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV---GPDPAGIAVTPDG  255 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC---CSSEEEEEECTTS
T ss_pred             cccccccccceeeeecccccCCcceeeccccccccccccccceeee-eeeeecCCCeEEEEEcC---CCCEEEEEEeCCC
Confidence            7888888888777666666677889999999998876543   457 99999999999988874   3568999999999


Q ss_pred             CEE-EEEeCCCcEEEEEeecCCC
Q 015650          316 QWL-AVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       316 ~~l-~s~~~dg~v~iwd~~~~~~  337 (403)
                      ++| ++++.++.|++||+++++.
T Consensus       256 ~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         256 KKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCeEEEEECCCCeE
Confidence            987 5677899999999999875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.9e-23  Score=190.27  Aligned_cols=263  Identities=13%  Similarity=0.064  Sum_probs=177.1

Q ss_pred             EEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEE--Ee--
Q 015650           99 CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--LS--  173 (403)
Q Consensus        99 ~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~--~~--  173 (403)
                      ++++..+++ |+|||+.+++.+  ..+. .+ ..+..++|+||+..+++++.|     +.|++||+.+++....  +.  
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~--~~l~-~g-~~~~~vafSPDGk~l~~~~~d-----~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIV--KVID-TG-YAVHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEE--EEEE-CC-SSEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEE--EEEe-CC-CCeeEEEECCCCCEEEEEeCC-----CCEEEEEccCCceeEEEEEeCC
Confidence            446666544 999999998776  5665 23 458899999999999999988     9999999999875443  33  


Q ss_pred             --cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee---------CCcc
Q 015650          174 --FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP---------GLQK  238 (403)
Q Consensus       174 --~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~d  238 (403)
                        |...+.+++|+|||++++    .++.+++||..+++++..+..+...+....+.+++...+++.+         ....
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence              344455667788998765    4889999999999888877665554444444444433322221         1223


Q ss_pred             CeEEEEEccCCc--eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE---------------------
Q 015650          239 GQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ---------------------  295 (403)
Q Consensus       239 ~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~---------------------  295 (403)
                      +.+.+++.....  ......+...+..+.|+|++++++++..+...+.+++..+++.+.                     
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  264 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence            445555544432  223446777889999999999988877655437777765554332                     


Q ss_pred             ---------------------------------EEecCCCcccEEEEEeCCCCCEEEE-------EeCCCcEEEEEeecC
Q 015650          296 ---------------------------------EVRRGADRAEIYSLAFSSNAQWLAV-------SSDKGTVHVFNLKVN  335 (403)
Q Consensus       296 ---------------------------------~~~~~~~~~~v~~l~~s~d~~~l~s-------~~~dg~v~iwd~~~~  335 (403)
                                                       .+.+  |...+..++|+||+++|++       ++.+++|+|||++++
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g--~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC--SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             CceEEeccCCCceEEEeeccccccccccceEeEEEec--CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCC
Confidence                                             2222  4556888999999999995       456889999999998


Q ss_pred             CCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEE
Q 015650          336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL  398 (403)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~  398 (403)
                      +...++.                     +     ......+..+...+..++|||||++|++.
T Consensus       343 ~~~~~~~---------------------~-----~~~~~~~~~~~~rv~~~~fSpDGk~i~vs  379 (426)
T d1hzua2         343 DAKYQVL---------------------P-----IAEWADLGEGAKRVVQPEYNKRGDEVWFS  379 (426)
T ss_dssp             TSCCEEE---------------------C-----HHHHHCCCSSCCCEEEEEECSSSSEEEEE
T ss_pred             CcCeEEe---------------------c-----cchhcccCCCCccEEEEEECCCCCEEEEE
Confidence            8532211                     0     00000012234567789999999988654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=6.1e-23  Score=186.94  Aligned_cols=252  Identities=9%  Similarity=-0.021  Sum_probs=177.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecc--cCcceeEEEEeeeCCeEEE-eeCCCCCCCC
Q 015650           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILAL-VGGGPDPQYP  154 (403)
Q Consensus        79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~  154 (403)
                      ..+..| ..+..++|+|||++|++++ |+.|++||+.+.+......+.  .+|...+.++.|++++..+ +++..+    
T Consensus        56 ~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~----  130 (426)
T d1hzua2          56 KVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP----  130 (426)
T ss_dssp             EEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES----
T ss_pred             EEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC----
Confidence            334444 4689999999999999887 556999999888755444333  2355566777888888765 444455    


Q ss_pred             CceEEEEECCCCceeEEEe--------------------------------------------------------cCCce
Q 015650          155 LNKVMIWDDHQSRCIGELS--------------------------------------------------------FRSEV  178 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~--------------------------------------------------------~~~~i  178 (403)
                       +.+++||..+++++..+.                                                        +...+
T Consensus       131 -~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  209 (426)
T d1hzua2         131 -PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL  209 (426)
T ss_dssp             -SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSE
T ss_pred             -CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCcc
Confidence             899999987765443222                                                        12223


Q ss_pred             eEEEEecCceEEE----ecCeEEEEEcCCceeeeEeecc--CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC----
Q 015650          179 RSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----  248 (403)
Q Consensus       179 ~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~----  248 (403)
                      ..+.|+|+++++.    .++.+.+++..+++.+..+...  ........+...+.....+.....++.+.+|+...    
T Consensus       210 ~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~  289 (426)
T d1hzua2         210 ADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP  289 (426)
T ss_dssp             EEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCT
T ss_pred             EeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccc
Confidence            4566666666555    2456777777777766665432  22334455555555555555566789999998765    


Q ss_pred             ----CceeEEeecCCceEEEEEcCCCCEEEE-------EeCCCcEEEEEEcCCCcEEEEEec-------CCCcccEEEEE
Q 015650          249 ----KRTKFIMAHDSRIACFALTQDGQLLAT-------SSTKGTLVRIFNTLDGTLLQEVRR-------GADRAEIYSLA  310 (403)
Q Consensus       249 ----~~~~~~~~~~~~i~~~~~sp~g~~l~s-------~~~dg~~i~iwd~~~~~~~~~~~~-------~~~~~~v~~l~  310 (403)
                          +....+.+|...+..++|+|||++|++       +..+++ |+|||+++++...++..       ..+...|.+++
T Consensus       290 ~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~  368 (426)
T d1hzua2         290 QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE  368 (426)
T ss_dssp             TTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE
T ss_pred             cccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeEEeccchhcccCCCCccEEEEE
Confidence                345668899999999999999999994       456788 99999999987766532       12445799999


Q ss_pred             eCCCCCEEEEE-----eCCCcEEEEEeecCCC
Q 015650          311 FSSNAQWLAVS-----SDKGTVHVFNLKVNSG  337 (403)
Q Consensus       311 ~s~d~~~l~s~-----~~dg~v~iwd~~~~~~  337 (403)
                      |||||++|+..     +.+|.|+|||.++.+.
T Consensus       369 fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         369 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             ECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence            99999977543     3688899999999884

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.3e-22  Score=177.80  Aligned_cols=252  Identities=11%  Similarity=0.103  Sum_probs=171.1

Q ss_pred             cccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce----eEEEecCCceeEEEEecCc-eEEE---ecCe
Q 015650          124 FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC----IGELSFRSEVRSVKLRRDR-IIVV---LEQK  195 (403)
Q Consensus       124 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~----~~~~~~~~~i~~~~~~~~~-~~~~---~d~~  195 (403)
                      +..+|...|.+++|+|++.+|++++.|     |+|+|||+.++..    ...+.|..+|.+++|++++ .+++   .|+.
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~D-----g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECC-----CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            334899999999999999999999999     9999999876643    3333489999999999864 4555   4899


Q ss_pred             EEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eE----Eee--cCCceEEEEEcC
Q 015650          196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KF----IMA--HDSRIACFALTQ  268 (403)
Q Consensus       196 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~----~~~--~~~~i~~~~~sp  268 (403)
                      |++|++...........+........+...+...++.  ++.++.+++||++.... ..    ...  .......+.+.+
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA--ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEE--EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             eeeeecccccccccccccccccccccccccccccccc--cccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            9999998877766665555554444444433443333  24789999999876321 11    111  123445667788


Q ss_pred             CCCEEEEEeCCCcEEEEEEcCCCcEEEEEec-CCCcccEEEEEe-CCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCC
Q 015650          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIYSLAF-SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRST  346 (403)
Q Consensus       269 ~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~-s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  346 (403)
                      ++..+++++.|+. |++||+...+....... ......+.+..+ ..++..+++++.||.+.+|+++...........  
T Consensus       159 ~~~~~~~~~~d~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~--  235 (342)
T d1yfqa_         159 NSSRLIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR--  235 (342)
T ss_dssp             CSSEEEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC--
T ss_pred             cCCceeeecCCCc-EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc--
Confidence            9999999999999 99999987654322211 113344555544 457788999999999999999876642221100  


Q ss_pred             CCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          347 SDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                               ..+         ...........+...+++++|+|++++|++|+.||+
T Consensus       236 ---------~~~---------~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         236 ---------FAF---------RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             ---------EEE---------ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             ---------cee---------eeeeeccCCCcccccceeEEecCCccEEEEECCCCE
Confidence                     000         000000001223346889999999999999999995

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=8e-21  Score=166.51  Aligned_cols=222  Identities=9%  Similarity=0.055  Sum_probs=168.3

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEECCCCceeEEEe-c
Q 015650           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELS-F  174 (403)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~  174 (403)
                      ++|++++ ++.|+|||+.+.+......+. .+...+..+++++++..+ +++..+     +.|.+||+.+++.+..+. +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~-~~~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC-CCCCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecC
Confidence            4677777 667999999988776443333 344567789999998665 566667     899999999999988876 2


Q ss_pred             -----CCceeEEEEecCceEEEe---------------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650          175 -----RSEVRSVKLRRDRIIVVL---------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (403)
Q Consensus       175 -----~~~i~~~~~~~~~~~~~~---------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (403)
                           ...+..++|+|++..++.               +..+.+||..+++.+..+... ..+..++++++++.++++  
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--  152 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE--
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEE--
Confidence                 234567999999887761               467999999999888887654 456788999998866543  


Q ss_pred             CCccCeEEEEEccCCc----------------------------------------------------------------
Q 015650          235 GLQKGQVRVEHYASKR----------------------------------------------------------------  250 (403)
Q Consensus       235 g~~d~~i~v~d~~~~~----------------------------------------------------------------  250 (403)
                      +   +.+.+||..+..                                                                
T Consensus       153 ~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         153 G---RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             S---SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             c---CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            2   335566654311                                                                


Q ss_pred             -e--eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650          251 -T--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (403)
Q Consensus       251 -~--~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v  327 (403)
                       .  ..+..+...+..+.++|++.+++.+  ++. |++||+.+++.+..+.   +...+.+++|+|||++|++++.|+.|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i  303 (337)
T d1pbyb_         230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred             cEEEEEecCCCcceEEEEecccceEEEEc--ccc-EEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcE
Confidence             1  1122345556677888888888765  467 9999999999999887   45678999999999999999999999


Q ss_pred             EEEEeecCCC
Q 015650          328 HVFNLKVNSG  337 (403)
Q Consensus       328 ~iwd~~~~~~  337 (403)
                      ++||+++.+.
T Consensus       304 ~v~D~~t~~~  313 (337)
T d1pbyb_         304 AAYDAETLEK  313 (337)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCcE
Confidence            9999999885

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=4e-22  Score=181.36  Aligned_cols=242  Identities=11%  Similarity=-0.015  Sum_probs=172.4

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecc--cCcceeEEEEeeeCCeEEE-eeCCCCCCCCC
Q 015650           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILAL-VGGGPDPQYPL  155 (403)
Q Consensus        80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~  155 (403)
                      .+..+ ..+..++|+|||++|++++ |+.|++||+.+.+......+.  .++...+.+..|++|+..+ +++..+     
T Consensus        57 ~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~-----  130 (432)
T d1qksa2          57 VLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP-----  130 (432)
T ss_dssp             EEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET-----
T ss_pred             EEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC-----
Confidence            34344 3699999999999999887 556999999877654333333  1355566677788898764 667667     


Q ss_pred             ceEEEEECCCCceeEEEe------------cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEee-ccCCCce
Q 015650          156 NKVMIWDDHQSRCIGELS------------FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIE-TIANPKG  218 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~------------~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~-~~~~~~~  218 (403)
                      +.|++||..+++.+..+.            +......+.+++++..++    .++.|.+||..+++...... .......
T Consensus       131 ~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~  210 (432)
T d1qksa2         131 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH  210 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred             CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccc
Confidence            999999999999887765            234456788999987655    37899999998876544333 2334567


Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee------cCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCC
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA------HDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDG  291 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~  291 (403)
                      .++++|+++.++++.  ..++.+.++|....+......      |........+...+...++.. .++. |.+|+....
T Consensus       211 ~~~~spdg~~~~va~--~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~-v~~~~~~~~  287 (432)
T d1qksa2         211 DGGLDGSHRYFITAA--NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS-VALIGTDPE  287 (432)
T ss_dssp             EEEECTTSCEEEEEE--GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE-EEEEECCTT
T ss_pred             cceECCCCCEEEEec--cccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCce-EEecccccc
Confidence            899999998766654  467899999998876654432      333444555555555555443 3677 999987665


Q ss_pred             cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~  336 (403)
                      ..    .  .+...|....++|++..+++++.++..++|+..+..
T Consensus       288 ~~----~--~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~  326 (432)
T d1qksa2         288 GH----P--DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN  326 (432)
T ss_dssp             TC----T--TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred             cc----c--ccccEEEEEEEcCCCCeEEEEecCCccceeecccCC
Confidence            43    1  145678888899999889899888999999877655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=3.6e-21  Score=169.40  Aligned_cols=261  Identities=10%  Similarity=-0.011  Sum_probs=181.2

Q ss_pred             EEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEECCCCce
Q 015650           91 ISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        91 i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~~~~~~  168 (403)
                      ++|++++++|++++ ++.|.|||+++++......+.  +......+.|+||+..+ +++..+     +.|++||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~--~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC--CCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCee
Confidence            47899999999998 556999999988766433443  55567789999997654 666667     9999999999999


Q ss_pred             eEEEecC-------CceeEEEEecCceEEE-e--------------cCeEEEEEcCCceeeeEeecc--CCCceeEEEee
Q 015650          169 IGELSFR-------SEVRSVKLRRDRIIVV-L--------------EQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQ  224 (403)
Q Consensus       169 ~~~~~~~-------~~i~~~~~~~~~~~~~-~--------------d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~  224 (403)
                      +..+...       ..+..++|+|||.+++ .              ++.+.+|+..+++....+..+  ...+..+.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            8877621       2456899999998775 1              567999999887765554433  23344555555


Q ss_pred             CCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCE--------------------------EEEEeC
Q 015650          225 GVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL--------------------------LATSST  278 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~--------------------------l~s~~~  278 (403)
                      ++.  +++.    ++.+.+|+..+...............+.++|++..                          ++++..
T Consensus       155 ~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
T d1jmxb_         155 DGS--LYVA----GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  228 (346)
T ss_dssp             TSC--EEEE----SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             CCE--EEEe----CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence            543  3332    25688999887554433222233333444444432                          333444


Q ss_pred             CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccc
Q 015650          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (403)
Q Consensus       279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (403)
                      +.. +.+||+.++......... +...+..+.+++++.+++... ++.|++||+.+++.                     
T Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~---------------------  284 (346)
T d1jmxb_         229 LYG-YLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKL---------------------  284 (346)
T ss_dssp             EEE-EEEEETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEE---------------------
T ss_pred             Cce-EEEEECCCCceEEEEeec-ccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcE---------------------
Confidence            555 888998888776555433 567888999999998888766 45799999988873                     


Q ss_pred             ccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                                    +..+ .....+..++|||||++|++++.||+
T Consensus       285 --------------~~~~-~~~~~~~~va~s~DG~~l~v~~~d~~  314 (346)
T d1jmxb_         285 --------------IKAA-NLDHTYYCVAFDKKGDKLYLGGTFND  314 (346)
T ss_dssp             --------------EEEE-ECSSCCCEEEECSSSSCEEEESBSSE
T ss_pred             --------------EEEE-cCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence                          1112 23457889999999999999999873

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=2.4e-19  Score=162.79  Aligned_cols=227  Identities=12%  Similarity=0.077  Sum_probs=164.8

Q ss_pred             EEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce--eEEEe--
Q 015650           99 CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC--IGELS--  173 (403)
Q Consensus        99 ~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~--~~~~~--  173 (403)
                      ++++.++++ |.|||.++++.+  ..+. .+ ..+..++|+||+.++++++.|     +.|++||+.+++.  +..+.  
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~--~~~~-~g-~~~~~v~fSpDG~~l~~~s~d-----g~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIK--TVLD-TG-YAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEE--EEEE-CS-SCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEE--EEEe-CC-CCeeEEEECCCCCEEEEEcCC-----CCEEEEEeeCCCceEEEEEecC
Confidence            346666554 999999998877  5565 23 368899999999999998888     9999999988764  34444  


Q ss_pred             --cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCC-----------CceeEEEeeCCCeEEEEeeCC
Q 015650          174 --FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIAN-----------PKGLCAVSQGVGSLVLVCPGL  236 (403)
Q Consensus       174 --~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~  236 (403)
                        +...+.+..|+|||++++    .+++|++||..+++.+..+..+..           ....+.+++++..++++.  .
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~--~  182 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV--K  182 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE--T
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE--c
Confidence              334455566778998764    489999999999998877765432           233467788777655543  4


Q ss_pred             ccCeEEEEEccCCcee-EE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC---CcccEEEEEe
Q 015650          237 QKGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA---DRAEIYSLAF  311 (403)
Q Consensus       237 ~d~~i~v~d~~~~~~~-~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~---~~~~v~~l~~  311 (403)
                      .++.|.+||....... .. ..+...+..++|+|+|+++++++.++..|.++|..+++.+..+..+.   +........+
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~  262 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH  262 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceec
Confidence            6899999998875432 22 24566789999999999988888766549999999998887776431   3344556666


Q ss_pred             CCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650          312 SSNAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       312 s~d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                      ...+...++.. .++.|.+|+.....
T Consensus       263 ~~~g~~~~~~~lg~~~v~~~~~~~~~  288 (432)
T d1qksa2         263 PTFGPVWATSHMGDDSVALIGTDPEG  288 (432)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             CCCCceecccccCCceEEeccccccc
Confidence            66666665554 48899999876654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3.9e-19  Score=155.59  Aligned_cols=216  Identities=14%  Similarity=0.114  Sum_probs=158.0

Q ss_pred             EEEeeCCCCCCCCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccC
Q 015650          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIA  214 (403)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~  214 (403)
                      .++++++.|     ++|++||+.+++.+..+.   +...+..++|+|||++++    .++.|++||+.+++.+..+..+.
T Consensus         2 ~~~vt~~~d-----~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARP-----DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETT-----TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCC-----CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            367777887     999999999999999987   345678999999998764    37899999999999888876543


Q ss_pred             C-----CceeEEEeeCCCeEEEEeeC---------CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC
Q 015650          215 N-----PKGLCAVSQGVGSLVLVCPG---------LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (403)
Q Consensus       215 ~-----~~~~~~~~~~~~~~~~~~~g---------~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg  280 (403)
                      .     ....++++|+++.++++...         ..+..+.+||..++.......+...+..++|+|||+++++++.+ 
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-  155 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD-  155 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS-
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC-
Confidence            2     34568999999877665421         13578889999998776666667778999999999999988654 


Q ss_pred             cEEEEEEcCCCcEEEEEecC------------------------------------------------------------
Q 015650          281 TLVRIFNTLDGTLLQEVRRG------------------------------------------------------------  300 (403)
Q Consensus       281 ~~i~iwd~~~~~~~~~~~~~------------------------------------------------------------  300 (403)
                        +.+||..+++....+..+                                                            
T Consensus       156 --~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T d1pbyb_         156 --LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             --EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             --cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEE
Confidence              678888776655544321                                                            


Q ss_pred             ----CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEE
Q 015650          301 ----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF  376 (403)
Q Consensus       301 ----~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (403)
                          .+...+..+.+++++.+++.+  ++.|++||+.+++.                                   +.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~-----------------------------------~~~~  276 (337)
T d1pbyb_         234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS-----------------------------------IKRV  276 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE-----------------------------------EEEE
T ss_pred             EEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcE-----------------------------------EEEE
Confidence                012233445566666666544  46677777766652                                   2222


Q ss_pred             EEeCCCceEEEeccCCCEEEEEccCCC
Q 015650          377 RLVEGSPYIVAFGHQKNTVVILGMDGR  403 (403)
Q Consensus       377 ~~~~~~~~~~~fs~d~~~l~~~~~dG~  403 (403)
                       .+...+.+++|+|||++|++++.||+
T Consensus       277 -~~~~~~~~~~~s~dG~~l~v~~~~~~  302 (337)
T d1pbyb_         277 -PLPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             -ECSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             -cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence             23567889999999999999999874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=4.7e-20  Score=162.12  Aligned_cols=251  Identities=8%  Similarity=-0.035  Sum_probs=177.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-c-CCcEEEEEcCCCeeEEEEecccC---cceeEEEEeeeCCeEEEeeCCCCCC-----
Q 015650           83 SPPPTLLHISFNQDHGCFAAG-T-DHGFRIYNCDPFREIFRRDFERG---GGIGVVEMLFRCNILALVGGGPDPQ-----  152 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~-~-~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~s~~~d~~-----  152 (403)
                      .|...+.+++|+|||++++++ . ++.|.+||+.+++..........   ....+..+.+++++..++....+..     
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            455667899999999987544 4 44499999998877644333211   1123456788888766554431100     


Q ss_pred             --CCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650          153 --YPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       153 --~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                        ..++.+.+|+..+++....+.   ....+..+.+++++.+++.++.+.+|++.+++.+..+..+.. ...+.+++++.
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  195 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVL  195 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCC
T ss_pred             eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCC-ccceEEecccc
Confidence              012789999998887655443   456677788889999888889999999999888877754332 22333334333


Q ss_pred             eEEEE-----------------------eeCCccCeEEEEEccCCcee--EEeecCCceEEEEEcCCCCEEEEEeCCCcE
Q 015650          228 SLVLV-----------------------CPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTL  282 (403)
Q Consensus       228 ~~~~~-----------------------~~g~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~  282 (403)
                      .++..                       ..+..+..+.+||.......  ....|...+..+.+++++.+++.... +. 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  273 (346)
T d1jmxb_         196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NR-  273 (346)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SE-
T ss_pred             EEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-Ce-
Confidence            22111                       11234566788888775543  34567888999999999888877665 46 


Q ss_pred             EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (403)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~  339 (403)
                      |++||..+++.+..+..   ...+.+++|+|||++|++++.|+.|++||+++.+.+.
T Consensus       274 v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         274 LAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             EEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             EEEEECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEE
Confidence            99999999999988873   4579999999999999999999999999999988533

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.1e-17  Score=146.22  Aligned_cols=262  Identities=11%  Similarity=0.103  Sum_probs=176.9

Q ss_pred             EEEEc-CCcEEEEEcCCCee-EEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEECCCCceeEEE----
Q 015650          100 FAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGEL----  172 (403)
Q Consensus       100 l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~~~~~~~~~~----  172 (403)
                      ++++. ++.|+||+++.... ...+.+.  +...+..++|+||+.+| +++..+     +.|++|++........+    
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~spDG~~L~v~~~~d-----~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEeCCCCEEEEEECCC-----CeEEEEEEeCCCCcEEEeeec
Confidence            34454 66699999976543 3334454  66788999999998877 555556     89999999776433322    


Q ss_pred             ecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEe--eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEc
Q 015650          173 SFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (403)
Q Consensus       173 ~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~  246 (403)
                      .+...+..++|+|||++++    .++.|.+|+..........  ..+...+..+.++++++.++...  ..+..|.+|+.
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~--~~~~~i~~~~~  157 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA--LKQDRICLFTV  157 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE--GGGTEEEEEEE
T ss_pred             ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccc--cccceeeEEEe
Confidence            2556788999999999877    2668999988765544333  34455667789999998765553  46678999998


Q ss_pred             cCCceeE-------EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc----EEEEEec----CCCcccEEEEEe
Q 015650          247 ASKRTKF-------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT----LLQEVRR----GADRAEIYSLAF  311 (403)
Q Consensus       247 ~~~~~~~-------~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~----~~~~~~~----~~~~~~v~~l~~  311 (403)
                      .......       ..........++|++++.+++..........+|+.....    ....+..    .........+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            7633211       122345568899999999887665543328888865322    2222221    112245778899


Q ss_pred             CCCCCEEEEE-eCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650          312 SSNAQWLAVS-SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (403)
Q Consensus       312 s~d~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~  390 (403)
                      ++|+++++.. ..++.+.+|++.......                                .........+.+..++|+|
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~p~~~a~sp  285 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGSVL--------------------------------SKEGFQPTETQPRGFNVDH  285 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCE--------------------------------EEEEEEECSSSCCCEEECT
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCCEE--------------------------------EEEEEeCCCCCeeEEEEeC
Confidence            9999977655 467899999998766311                                0111233345677899999


Q ss_pred             CCCEEEEEccCC
Q 015650          391 QKNTVVILGMDG  402 (403)
Q Consensus       391 d~~~l~~~~~dG  402 (403)
                      ||++|++++.++
T Consensus       286 DGk~l~va~~~~  297 (333)
T d1ri6a_         286 SGKYLIAAGQKS  297 (333)
T ss_dssp             TSSEEEEECTTT
T ss_pred             CCCEEEEEECCC
Confidence            999999887653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=4.9e-17  Score=144.54  Aligned_cols=241  Identities=7%  Similarity=-0.028  Sum_probs=157.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc------CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC---
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ---  152 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~---  152 (403)
                      ..+...+.+++++|||+.+++..      ...|.+||..+++.+  ..+. .+..  ..+.|+||+..++.+..+..   
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~--~~~~-~~~~--~~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVN-GGFL--PNPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE--EEEe-CCCC--ccEEEcCCCCEEEEEeecCCccc
Confidence            45777889999999999987653      223889998887765  4454 2322  26889999988776543210   


Q ss_pred             --CCCceEEEEECCCCceeEEEe-cCCc-------eeEEEEecCceEEE-----ecCeEEEEEcCCceeeeEeeccCCCc
Q 015650          153 --YPLNKVMIWDDHQSRCIGELS-FRSE-------VRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPK  217 (403)
Q Consensus       153 --~~~~~i~iwd~~~~~~~~~~~-~~~~-------i~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~  217 (403)
                        ..++.|.+||..+++.+..+. +...       ...+.|+++++.+.     .++.+.+|+....+......    ..
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~  167 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SP  167 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cc
Confidence              112789999999999888776 3322       24567777776544     14567777776655443332    23


Q ss_pred             eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce----------------------------------------------
Q 015650          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----------------------------------------------  251 (403)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~----------------------------------------------  251 (403)
                      ..+.++++++..+++.  ..|+.+.+|+......                                              
T Consensus       168 ~~~~~s~~g~~~~v~~--~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         168 TCYHIHPGAPSTFYLL--CAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             eeEEEecCCCcEEEEE--cCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence            4566677766655443  3566777776543211                                              


Q ss_pred             -eEE---eec----------CCceEEEEEcCCCCEEE----------EEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          252 -KFI---MAH----------DSRIACFALTQDGQLLA----------TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       252 -~~~---~~~----------~~~i~~~~~sp~g~~l~----------s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                       ...   ..+          ......+++++++..++          ....++. +.+||..+++.+..+.   +...+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~t~~~~~~~~---~~~~~~  321 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLVGQTSSQIS---LGHDVD  321 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe-EEEEECCCCcEEEEec---CCCCee
Confidence             000   000          01122345556665544          3444566 8999999999998887   456799


Q ss_pred             EEEeCCCCCE--EEEEeCCCcEEEEEeecCCC
Q 015650          308 SLAFSSNAQW--LAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       308 ~l~~s~d~~~--l~s~~~dg~v~iwd~~~~~~  337 (403)
                      +++|+|||+.  +++++.|+.|++||+.+++.
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            9999999984  46788999999999999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.5e-16  Score=137.37  Aligned_cols=247  Identities=11%  Similarity=0.075  Sum_probs=164.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC-CCCCCCceE
Q 015650           82 SSPPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKV  158 (403)
Q Consensus        82 ~~~~~~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~i  158 (403)
                      ..|.+.|..|+|+|||++|+++.  ++.|++|+++.................+..+++++++.+++.++. +     +.|
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~-----~~v  107 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA-----GNV  107 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT-----TEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCC-----Cce
Confidence            45778899999999999986554  455999999765433222111123445667899999877766653 4     789


Q ss_pred             EEEECCCCceeEEEe---cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEe------eccCCCceeEEEeeC
Q 015650          159 MIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI------ETIANPKGLCAVSQG  225 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~------~~~~~~~~~~~~~~~  225 (403)
                      .+|+...........   +...+.++.++|++.+++    .+..|.+|+..........      .........++++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~  187 (333)
T d1ri6a_         108 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  187 (333)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             eeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence            999987766544443   667788999999998777    2678999998764322211      112233467888888


Q ss_pred             CCeEEEEeeCCccCeEEEEEccCCc--ee---EEe------ecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcE
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYASKR--TK---FIM------AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL  293 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~~~--~~---~~~------~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~  293 (403)
                      +...+...  ...+...+|+.....  ..   .+.      ........+++++++++++... .++. +.+|++.....
T Consensus       188 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~-~~~~~~~~~~~  264 (333)
T d1ri6a_         188 EQYAYCVN--ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGS  264 (333)
T ss_dssp             SSEEEEEE--TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSC
T ss_pred             ceeEEeec--cccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCe-EEEEEEcCCCC
Confidence            87665543  456777888765522  11   111      1234567789999999876654 4566 99998875533


Q ss_pred             EEEEec-CCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650          294 LQEVRR-GADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       294 ~~~~~~-~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                      ...+.. ......+.+++|+|||++|++++ .++.|.+|+++...
T Consensus       265 ~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~t  309 (333)
T d1ri6a_         265 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ  309 (333)
T ss_dssp             CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred             EEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCC
Confidence            322221 11334678899999999987775 56899999886543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=8.6e-16  Score=135.27  Aligned_cols=233  Identities=14%  Similarity=0.029  Sum_probs=151.5

Q ss_pred             eEEEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEEecccCcc----eeEEEEeeeCCeEE--EeeCCCC
Q 015650           88 LLHISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGGG----IGVVEMLFRCNILA--LVGGGPD  150 (403)
Q Consensus        88 i~~i~~s~d~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~--~~s~~~d  150 (403)
                      +..++|+|||++|++.+           ++.|++||..+++..........+.    .....+.|++++..  ++....+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            34689999999887643           3459999999887664333321111    11234567777654  4444555


Q ss_pred             CCCCCceEEEEECCCCceeEEEecCCc--------eeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCce
Q 015650          151 PQYPLNKVMIWDDHQSRCIGELSFRSE--------VRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKG  218 (403)
Q Consensus       151 ~~~~~~~i~iwd~~~~~~~~~~~~~~~--------i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~  218 (403)
                           ..+.+|+..+++.+..+.....        ...+.+++|+..+.    .++.+.+++......     .+...+.
T Consensus       129 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~  198 (355)
T d2bbkh_         129 -----PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLIN  198 (355)
T ss_dssp             -----CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCS
T ss_pred             -----ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceee
Confidence                 7899999999998888763322        22345555554443    133444444333221     1222234


Q ss_pred             eEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee---c----------CCceEEEEEcCCCCEEEEEeCC------
Q 015650          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA---H----------DSRIACFALTQDGQLLATSSTK------  279 (403)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~---~----------~~~i~~~~~sp~g~~l~s~~~d------  279 (403)
                      ...+..++..++.+   ..++.+++|++..+....+..   +          ......+++++++..++....+      
T Consensus       199 ~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         199 HPAYSQKAGRLVWP---TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             CCEEETTTTEEEEE---BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eccccCCCCeEEEe---cCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            45666666654443   368999999998866543321   1          1223458899999988776543      


Q ss_pred             ----CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC--EEEEEeCCCcEEEEEeecCCC
Q 015650          280 ----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       280 ----g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~--~l~s~~~dg~v~iwd~~~~~~  337 (403)
                          .. |.+||..+++.+..+..   ...+.+++|+|||+  ++++++.|+.|++||+++++.
T Consensus       276 ~~~~~~-v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         276 KTASRF-VVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             TSCEEE-EEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             cCCCCe-EEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence                25 99999999999988873   45689999999998  345667899999999999984

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=3.7e-16  Score=137.66  Aligned_cols=259  Identities=11%  Similarity=0.041  Sum_probs=164.3

Q ss_pred             EEEcCCCCEEEEEc------CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeC----------CCCCCCC
Q 015650           91 ISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG----------GPDPQYP  154 (403)
Q Consensus        91 i~~s~d~~~l~~~~------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~----------~~d~~~~  154 (403)
                      .+.+|||+.+++..      .+.|.+||..+++.+  .++. .+...  .++|+|++..++..          ..+    
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~--~~~~-~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d----   77 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMID-GGFLP--NPVVADDGSFIAHASTVFSRIARGERT----   77 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEE-ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEE----
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEE--EEEE-CCCCC--ceEEcCCCCEEEEEeCCCccccccCCC----
Confidence            35689999987653      234999999988765  3443 22222  57899988655432          234    


Q ss_pred             CceEEEEECCCCceeEEEe-cC-------CceeEEEEecCceEEE-----ecCeEEEEEcCCceeeeEeeccCC------
Q 015650          155 LNKVMIWDDHQSRCIGELS-FR-------SEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIAN------  215 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~-~~-------~~i~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~------  215 (403)
                       +.|++||..+++.+..+. +.       .....++|++++..++     .+..+.+|+..+++.+..+.....      
T Consensus        78 -~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d2bbkh_          78 -DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT  156 (355)
T ss_dssp             -EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             -CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec
Confidence             789999999999888776 22       2345689999998766     256899999999988877754321      


Q ss_pred             -CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEE
Q 015650          216 -PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (403)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (403)
                       ....+.+++++..+++..  ..++.+.+++.....    ..+...+....+.+++..++.++.++. +++|++..++..
T Consensus       157 ~~~~~~~~~~dg~~~~v~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~  229 (355)
T d2bbkh_         157 APDTFFMHCRDGSLAKVAF--GTEGTPEITHTEVFH----PEDEFLINHPAYSQKAGRLVWPTYTGK-IHQIDLSSGDAK  229 (355)
T ss_dssp             ETTEEEEEETTSCEEEEEC--CSSSCCEEEECCCCS----CTTSCBCSCCEEETTTTEEEEEBTTSE-EEEEECTTSSCE
T ss_pred             CCcceEEEcCCCCEEEEEe--cCCCeEEEEeccccc----ceecceeeeccccCCCCeEEEecCCCe-EEEEecCCCcEE
Confidence             122344444444333322  223334443332211    123344556678888889999999999 999999877643


Q ss_pred             EE--EecC--------CCcccEEEEEeCCCCCEEEEEeCC----------CcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650          295 QE--VRRG--------ADRAEIYSLAFSSNAQWLAVSSDK----------GTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (403)
Q Consensus       295 ~~--~~~~--------~~~~~v~~l~~s~d~~~l~s~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (403)
                      ..  ...+        ........+++++++..++....+          ..|.+||+.+++.                 
T Consensus       230 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-----------------  292 (355)
T d2bbkh_         230 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-----------------  292 (355)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-----------------
T ss_pred             EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE-----------------
Confidence            21  1110        001223457888999887766533          3688999888773                 


Q ss_pred             ccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCE--EEEEccCC
Q 015650          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT--VVILGMDG  402 (403)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~--l~~~~~dG  402 (403)
                                        +.++.. ...+..++|+|||+.  +++++.||
T Consensus       293 ------------------~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~  323 (355)
T d2bbkh_         293 ------------------LAKFEM-GHEIDSINVSQDEKPLLYALSTGDK  323 (355)
T ss_dssp             ------------------EEEEEE-EEEECEEEECCSSSCEEEEEETTTT
T ss_pred             ------------------EEEecC-CCCEEEEEEcCCCCeEEEEEECCCC
Confidence                              122222 235778999999984  45556665

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=1.2e-13  Score=122.11  Aligned_cols=202  Identities=8%  Similarity=0.002  Sum_probs=139.2

Q ss_pred             CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe-------------c
Q 015650          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-------------E  193 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------d  193 (403)
                      .+...+..++++|++..++..........+.|.+||..+++.+.++... ....++|+|||++++.             +
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecCCcccccccc
Confidence            3566778888999988766432211111167999999999999988722 2337999999998872             4


Q ss_pred             CeEEEEEcCCceeeeEeeccCCCc-------eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEE
Q 015650          194 QKIFVYNFADLKLLHQIETIANPK-------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFAL  266 (403)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~  266 (403)
                      +.|.+||+.+++.+..+..+....       ..+.++++++.+++... ..++.+.+|+....+..   .+.....++.+
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  172 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF-AAGPAVGLVVQGGSSDD---QLLSSPTCYHI  172 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE-cCCCceEEeeccCCeEE---EEeccceeEEE
Confidence            679999999999888776554432       34788888887766542 34677888887765432   33445678899


Q ss_pred             cCCCCEE-EEEeCCCcEEEEEEcCCCcEEEEEecCC----CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650          267 TQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGA----DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (403)
Q Consensus       267 sp~g~~l-~s~~~dg~~i~iwd~~~~~~~~~~~~~~----~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~  335 (403)
                      +|+|+.+ ++.+.|+. +.+||...++.........    .......+.+++++.++ ..+.++.+++|+..+.
T Consensus       173 s~~g~~~~v~~~~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         173 HPGAPSTFYLLCAQGG-LAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAA  244 (373)
T ss_pred             ecCCCcEEEEEcCCCe-EEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCC
Confidence            9998765 67888999 9999998887776654321    11223455666666554 4456778888876544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.59  E-value=2.1e-13  Score=120.60  Aligned_cols=271  Identities=10%  Similarity=0.011  Sum_probs=170.2

Q ss_pred             EEEc-CCcEEEEEcCCCeeEEEEec-c--------------------------cCcceeEEEEeeeCCeEEEeeC-CCCC
Q 015650          101 AAGT-DHGFRIYNCDPFREIFRRDF-E--------------------------RGGGIGVVEMLFRCNILALVGG-GPDP  151 (403)
Q Consensus       101 ~~~~-~~~i~iw~~~~~~~~~~~~~-~--------------------------~~~~~~v~~~~~~~~~~~~~s~-~~d~  151 (403)
                      ++|+ ++.|+||++.+++.+..... .                          ..|..........+|+.+++.. ..+ 
T Consensus        15 ~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~-   93 (441)
T d1qnia2          15 WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN-   93 (441)
T ss_dssp             EECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT-
T ss_pred             EeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC-
Confidence            4444 44599999987776533211 1                          0122334455567888877444 444 


Q ss_pred             CCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCce--EEE--ecC------------------eEEEEEcCCceee
Q 015650          152 QYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRI--IVV--LEQ------------------KIFVYNFADLKLL  207 (403)
Q Consensus       152 ~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~--~~~--~d~------------------~i~i~d~~~~~~~  207 (403)
                          +.|.++|+.+++....+.  ....+..++|+|+++  +++  .+.                  .+..+|..+.+..
T Consensus        94 ----~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          94 ----TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             ----TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             ----CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence                899999999999888776  577899999999987  444  222                  2456888888777


Q ss_pred             eEeeccCCCceeEEEeeCCCeEEEEeeCCc--------------------------------------cCeEEEEEccCC
Q 015650          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQ--------------------------------------KGQVRVEHYASK  249 (403)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------------------------------------d~~i~v~d~~~~  249 (403)
                      .++.... ....+.++|+++..++.+.+++                                      ++.+.+++....
T Consensus       170 ~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~  248 (441)
T d1qnia2         170 WQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES  248 (441)
T ss_dssp             EEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred             EEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence            7776543 4578999999998776653321                                      233333333332


Q ss_pred             -ceeEEeecCCceEEEEEcCCCCEEEE-EeCCCcEEEEEEcCCCcEE--------EEEecC-CCcccEEEEEeCCCCCEE
Q 015650          250 -RTKFIMAHDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTLL--------QEVRRG-ADRAEIYSLAFSSNAQWL  318 (403)
Q Consensus       250 -~~~~~~~~~~~i~~~~~sp~g~~l~s-~~~dg~~i~iwd~~~~~~~--------~~~~~~-~~~~~v~~l~~s~d~~~l  318 (403)
                       .+..+..... ...+.++|||+++++ +..+++ |.|||+.+.+..        ..+... ...-.....+|+++|..+
T Consensus       249 ~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~t-vsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~y  326 (441)
T d1qnia2         249 EFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPT-VSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY  326 (441)
T ss_dssp             SSEEEECCBSS-CCCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred             ceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCc-EEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEE
Confidence             2334444433 578999999998865 566888 999998652210        001110 011234567899999988


Q ss_pred             EEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEE
Q 015650          319 AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL  398 (403)
Q Consensus       319 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~  398 (403)
                      .+...|..|..|++......  +.                 +... ......+++....+|...+...+|+|||++|+++
T Consensus       327 ts~~~ds~v~kw~~~~~~~~--~~-----------------~~~~-~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         327 TTLFIDSQVCKWNIADAIKH--YN-----------------GDRV-NYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             EEETTTTEEEEEEHHHHHHH--HT-----------------TCCC-CCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             EcccccceEEEeccchhhhh--hc-----------------cCCC-ceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            88899999999999643210  00                 0000 0111222222235666677778999999999999


Q ss_pred             c
Q 015650          399 G  399 (403)
Q Consensus       399 ~  399 (403)
                      +
T Consensus       387 ~  387 (441)
T d1qnia2         387 S  387 (441)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1.1e-13  Score=122.54  Aligned_cols=237  Identities=6%  Similarity=-0.036  Sum_probs=148.7

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEEecccC----cceeEEEEeeeCCeEEEeeCC-CCCCC
Q 015650           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGG-PDPQY  153 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~s~~-~d~~~  153 (403)
                      .++|+|||+.|++.+           ++.|++||..+.+......+...    .......+.|++|+..++.+. .+   
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~---  145 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS---  145 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS---
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC---
Confidence            589999999988754           33499999998877644333211    111123577899987665443 44   


Q ss_pred             CCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEee------ccCCCceeEEEeeC
Q 015650          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE------TIANPKGLCAVSQG  225 (403)
Q Consensus       154 ~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~  225 (403)
                        +.+.+||+.+++.+..+....... +.......+++  .||++.++++..........      .+........+.++
T Consensus       146 --~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         146 --SAAAGLSVPGASDDQLTKSASCFH-IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             --SCEEEEEETTTEEEEEEECSSCCC-CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             --CeEEEEECCCCcEeEEeeccCcce-EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence              899999999999988887322221 11112223333  47788888876543322211      11122223333333


Q ss_pred             CCeEEEEeeCCccCeEEEEEccCCceeEEee-------------cCCceEEEEEcCCCCEEEEEeCC---------CcEE
Q 015650          226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSSTK---------GTLV  283 (403)
Q Consensus       226 ~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-------------~~~~i~~~~~sp~g~~l~s~~~d---------g~~i  283 (403)
                        ..++..   ..+.+.++++.......+..             .......+++++++..++....+         .. |
T Consensus       223 --g~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~-v  296 (368)
T d1mdah_         223 --GMLVWA---VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN-T  296 (368)
T ss_dssp             --TEEEEC---BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE-E
T ss_pred             --cEEEEe---cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCce-E
Confidence              334443   34667777776654433221             11123457889999887665432         24 8


Q ss_pred             EEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCE--EEEEeCCCcEEEEEeecCCCCCCC
Q 015650          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW--LAVSSDKGTVHVFNLKVNSGSARS  341 (403)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~--l~s~~~dg~v~iwd~~~~~~~~~~  341 (403)
                      ++||..+++.+..+..   ...+.+++|+|||+.  ++++..++.|++||..+++.+.++
T Consensus       297 ~v~D~~t~~~~~~~~~---~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         297 SSVTASVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             EEEESSSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             EEEECCCCcEeEEecC---CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            9999999999888873   467899999999973  456678999999999999864443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=6e-12  Score=111.14  Aligned_cols=187  Identities=9%  Similarity=0.042  Sum_probs=131.8

Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-c-C-----------------------------CceeEEEEecCceE
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F-R-----------------------------SEVRSVKLRRDRII  189 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~-~-----------------------------~~i~~~~~~~~~~~  189 (403)
                      ...+++++.+     |+|++|++.+++.++.+. + .                             ..+......|||++
T Consensus        11 ~y~f~Sgg~s-----G~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~   85 (441)
T d1qnia2          11 YYGFWSGGHQ-----GEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY   85 (441)
T ss_dssp             EEEEEECBTT-----CCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE
T ss_pred             EEEEEeCCCC-----CcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE
Confidence            4557788888     999999999998888764 1 1                             11233445789998


Q ss_pred             EE----ecCeEEEEEcCCceeeeEeec-cCCCceeEEEeeCCCeEEEEeeCCcc----------------CeEEEEEccC
Q 015650          190 VV----LEQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQK----------------GQVRVEHYAS  248 (403)
Q Consensus       190 ~~----~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d----------------~~i~v~d~~~  248 (403)
                      ++    .+++|.++|+++++..+.+.. .......++++++++..|+++.+...                ..+..+|..+
T Consensus        86 lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t  165 (441)
T d1qnia2          86 LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET  165 (441)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred             EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence            87    367999999999988877653 34566789999999988877643210                1234567666


Q ss_pred             CceeEEeecCCceEEEEEcCCCCEEEEEeCCC-----------------------------------------cEEEEEE
Q 015650          249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKG-----------------------------------------TLVRIFN  287 (403)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg-----------------------------------------~~i~iwd  287 (403)
                      ........-......+.|+|+|+++++.+.+.                                         . +.|++
T Consensus       166 ~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v-~vvd~  244 (441)
T d1qnia2         166 MDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV-PVVDG  244 (441)
T ss_dssp             CSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC-CEEEC
T ss_pred             ceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc-EEEEc
Confidence            55433333345678899999999998876542                                         2 44555


Q ss_pred             cCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE-EeCCCcEEEEEeecCC
Q 015650          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV-SSDKGTVHVFNLKVNS  336 (403)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s-~~~dg~v~iwd~~~~~  336 (403)
                      ....+.++.+..+   .....+.++|||+++++ +..+++|.+||+++.+
T Consensus       245 ~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         245 RGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             SSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred             ccCCceEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence            5555666666643   34577999999998765 5689999999998755

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=6.6e-12  Score=114.61  Aligned_cols=142  Identities=11%  Similarity=-0.012  Sum_probs=100.9

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEE---ecccCcceeEEEEeeeCCeEEEeeCCCCCC----CCCceEEEEE
Q 015650           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQ----YPLNKVMIWD  162 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~----~~~~~i~iwd  162 (403)
                      .+.|.+|++++.. .++++.+|++.+++.....   .+. .+...+.++.|+||+..|+.......    ...+.+.+||
T Consensus        21 ~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTT-TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhh-hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4679999987754 4667999999988765322   222 45567899999999988776532100    0016889999


Q ss_pred             CCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeecc------------------CCCceeEEE
Q 015650          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI------------------ANPKGLCAV  222 (403)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~------------------~~~~~~~~~  222 (403)
                      +.+++......+...+..+.|+|||..++  .++.+++|+..+++..+.....                  ......+.|
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w  178 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             CCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence            99987654444888999999999999888  6899999999888765433211                  122345789


Q ss_pred             eeCCCeEEEEe
Q 015650          223 SQGVGSLVLVC  233 (403)
Q Consensus       223 ~~~~~~~~~~~  233 (403)
                      +|+++.+.++.
T Consensus       179 SPDGk~ia~~~  189 (470)
T d2bgra1         179 SPNGTFLAYAQ  189 (470)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCccceeE
Confidence            99998766553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=3.3e-09  Score=89.14  Aligned_cols=235  Identities=12%  Similarity=0.208  Sum_probs=155.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecc-----cCcceeEEEEeeeC--CeEEEeeCCCCCCCCCceE
Q 015650           87 TLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~i  158 (403)
                      ....|+++++|+++++-..+ .|++|+.+. +.+  ..+.     .+.......+.+..  ...+++.....     +.|
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~i   95 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-----HQI   95 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-----CEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEE--EEecccCCCcccccccccccccccccccceeccCCc-----ccc
Confidence            46899999999988876544 499998653 222  2221     01112233334332  33444444444     677


Q ss_pred             EEEECCCCceeEEEe--cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeecc--CCCceeEEEeeCCCeEEE
Q 015650          159 MIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  231 (403)
                      ..++ ..++....+.  .......+++.+++.+++.   .+.+.+++. +++.+..+...  ......+++.+++ .+++
T Consensus        96 ~~~~-~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v  172 (279)
T d1q7fa_          96 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQ-EIFI  172 (279)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred             cccc-ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccce-eEEe
Confidence            7777 4677776665  4456788999999887774   456888884 56666666332  2333456666554 3333


Q ss_pred             EeeCCccCeEEEEEccCCceeEEe--ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      +  ....+.|++||.....+..+.  +.......|+++++|+++++-.. ++. |.+|+ .+|+.+..+...........
T Consensus       173 ~--d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~-v~~f~-~~G~~~~~~~~~~~~~~p~~  248 (279)
T d1q7fa_         173 S--DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQCFD  248 (279)
T ss_dssp             E--EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSCEEE
T ss_pred             e--eccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcE-EEEEC-CCCCEEEEEeCCCCCCCEeE
Confidence            3  346789999998876665553  24456789999999998877554 446 99998 57998888865434456889


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |++.+||.+++ +..++.|++|+.....+
T Consensus       249 vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         249 VALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             EEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            99999997555 55789999999987754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.38  E-value=1.4e-10  Score=101.76  Aligned_cols=245  Identities=10%  Similarity=0.080  Sum_probs=145.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE--EEeeCCCCCCCCCceEEEE
Q 015650           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYPLNKVMIW  161 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~~~~~i~iw  161 (403)
                      ....+..|+|++++++|.+...+.+..|.++........... ........+.+++++.  +++.....    .+.|..+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~p~~v~~~~~~~~~~v~~a~~~----~~~v~~~  112 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH-PIGGHPRANDADTNTRAIFLLAAKQP----PYAVYAN  112 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE-ECCSSGGGGCTTSCCEEEEEEECSST----TCCEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee-cCCCCcEEEEECCCCCEEEEEEecCC----CCEEEEe
Confidence            344566799999999998887777888887654333221111 0111223445555554  34433221    1445544


Q ss_pred             ECCC-------------Cce---eEEEe--cCCceeEEEEecCceEEE-e---cCeEEEEEcCC-ceee--eEee--ccC
Q 015650          162 DDHQ-------------SRC---IGELS--FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFAD-LKLL--HQIE--TIA  214 (403)
Q Consensus       162 d~~~-------------~~~---~~~~~--~~~~i~~~~~~~~~~~~~-~---d~~i~i~d~~~-~~~~--~~~~--~~~  214 (403)
                      .+..             ++.   .....  ....+.++.|+|||++++ .   .+.|.+|+... +...  ..+.  ...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T d1jofa_         113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             EccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC
Confidence            3321             111   11111  233578999999999777 2   46888888654 2222  1221  123


Q ss_pred             CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe--------------------ecCCceEEEEEcCCCCEEE
Q 015650          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--------------------AHDSRIACFALTQDGQLLA  274 (403)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~--------------------~~~~~i~~~~~sp~g~~l~  274 (403)
                      .....++|+|+++.++++.  ..++.|.+|++.......+.                    .+......+.++|||++|+
T Consensus       193 ~gPr~i~f~pdg~~~yv~~--e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CceEEEEECCCCceEEEec--cCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            4457799999999777765  56899999998774422111                    1112356789999999998


Q ss_pred             EEeC------CCcEEEEEEcCCC-cEEEEE---ecCCCcccEEEEEeCC-CCCEEEEEe-CCCcEEEEEeecCC
Q 015650          275 TSST------KGTLVRIFNTLDG-TLLQEV---RRGADRAEIYSLAFSS-NAQWLAVSS-DKGTVHVFNLKVNS  336 (403)
Q Consensus       275 s~~~------dg~~i~iwd~~~~-~~~~~~---~~~~~~~~v~~l~~s~-d~~~l~s~~-~dg~v~iwd~~~~~  336 (403)
                      ++..      .+. |..|++... ......   ..........+++++| +|++|+++. .++.|.+|+++...
T Consensus       271 vsnr~~~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         271 ASSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEcccCCCccceE-EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            7643      223 666776543 222111   1111223567799998 899887775 77999999997654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=5.1e-10  Score=93.65  Aligned_cols=218  Identities=11%  Similarity=0.061  Sum_probs=136.7

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  187 (403)
                      |.|.|.+.......  +.  +...+....|+||+..|+-......  ...+.+.+...+.......+........|+|++
T Consensus        21 l~i~d~dG~~~~~l--~~--~~~~~~sP~wSPDGk~IAf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          21 LRVSDYDGYNQFVV--HR--SPQPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEETTSCSCEEE--EE--ESSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCSSCEEEEEECTTS
T ss_pred             EEEEcCCCCCcEEE--ec--CCCceeeeEECCCCCEEEEEEeecc--CcceeeeecccCceeEEeeeecccccceecCCC
Confidence            56666665444322  22  4556788999999887764322200  145777777777666555588888999999999


Q ss_pred             eEEEe----cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCce
Q 015650          188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (403)
Q Consensus       188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i  261 (403)
                      ..++.    ++  .+..+......... ............++++++..+++........|.+.++.......+..+....
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~  173 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN  173 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEE
T ss_pred             CeeeEeeecCCccceeeccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccc
Confidence            88872    33  23333333332222 2222333345566777776665542222335666677777776677777778


Q ss_pred             EEEEEcCCCCEEEEEeCCCcE--EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC---CCcEEEEEeecCC
Q 015650          262 ACFALTQDGQLLATSSTKGTL--VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLKVNS  336 (403)
Q Consensus       262 ~~~~~sp~g~~l~s~~~dg~~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~---dg~v~iwd~~~~~  336 (403)
                      ....|+|+++.++..+.++..  |.+.+...+.. ..+.   +........|||||++|+..+.   ...|++++++.++
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~---~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS---STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC---CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccccc-eEee---cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            888999999999877665521  44555555544 2332   3356678899999999876553   3467888887665

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=1.2e-10  Score=102.38  Aligned_cols=200  Identities=8%  Similarity=-0.021  Sum_probs=132.3

Q ss_pred             EEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650           89 LHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (403)
Q Consensus        89 ~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~  166 (403)
                      ..++|+|||++|+++.  ++.+.+||+.+.+........  ....+   ...... .++..+.|     |.+.+|++...
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~---~~~~~~-~~v~~~~D-----g~~~~~~~~~~  195 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA--SCFHI---HPGAAA-THYLGSCP-----ASLAASDLAAA  195 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS--SCCCC---EEEETT-EEECCCCT-----TSCEEEECCSS
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc--CcceE---ccCCCc-eEEEEcCC-----CCEEEEEecCC
Confidence            3589999999998775  445999999988776443332  11111   112222 33445555     88888887665


Q ss_pred             ceeEEEe-------cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEee--c----------cCCCceeEEEeeCC
Q 015650          167 RCIGELS-------FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE--T----------IANPKGLCAVSQGV  226 (403)
Q Consensus       167 ~~~~~~~-------~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~--~----------~~~~~~~~~~~~~~  226 (403)
                      .......       +...+..+.+.+++..+. .++.++++++..++......  .          .......+++++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~  275 (368)
T d1mdah_         196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT  275 (368)
T ss_dssp             CCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred             ceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCC
Confidence            4333221       234456678888888887 57788888876654332111  0          11223468899999


Q ss_pred             CeEEEEeeCC------ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCC-E-EEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          227 GSLVLVCPGL------QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ-L-LATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       227 ~~~~~~~~g~------~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~-~-l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      +.++++....      ....|.+||..+++......+...+.+++|+|||+ + ++++..++. |+|||..+++.+.++.
T Consensus       276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~-v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVE  354 (368)
T ss_dssp             TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECC
T ss_pred             CEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEEE
Confidence            8887765221      12468899999876554444556788999999997 3 456667888 9999999999999998


Q ss_pred             cC
Q 015650          299 RG  300 (403)
Q Consensus       299 ~~  300 (403)
                      .+
T Consensus       355 ~g  356 (368)
T d1mdah_         355 LD  356 (368)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.29  E-value=3.3e-09  Score=90.35  Aligned_cols=224  Identities=13%  Similarity=0.041  Sum_probs=144.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~  165 (403)
                      .+..+++.|||+++++...++ |..|+.+..... ..    .....+..+++.+++.++++...+     +.+..|+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~-~~----~~~~~~~gla~~~dG~l~v~~~~~-----~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-HA----TVEGKVSGLAFTSNGDLVATGWNA-----DSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-EE----ECSSEEEEEEECTTSCEEEEEECT-----TSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE-EE----cCCCCcceEEEcCCCCeEEEecCC-----ceEEEEEecc
Confidence            477899999999999887555 666664433222 12    244578889999998887776555     6777777544


Q ss_pred             C--ceeEEEe--cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeec--------cCCCceeEEEeeCCCeEE
Q 015650          166 S--RCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIET--------IANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       166 ~--~~~~~~~--~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  230 (403)
                      .  .......  .......+.+.+++.+++.   ++.++.+|...+........        .........+..+++.++
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~  178 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  178 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCcee
Confidence            3  2222222  4556789999999998883   56888888776543222111        112223344556677766


Q ss_pred             EEeeCCccCeEEEEEccCCce---eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~---~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (403)
                      ++.  ...+.|..++......   ............++|+++|+++++...++. |..++. .++..........-...+
T Consensus       179 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~-V~~i~p-~G~~~~~~~~~~~~~~pt  254 (302)
T d2p4oa1         179 VSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS-VVRIAP-DRSTTIIAQAEQGVIGST  254 (302)
T ss_dssp             EEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC-EEEECT-TCCEEEEECGGGTCTTEE
T ss_pred             eec--CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc-EEEECC-CCCEEEEEecCCCCCCce
Confidence            654  4578888888766321   122223445678999999998888778888 998875 455444443221224689


Q ss_pred             EEEe---CCCCCEEEEEeCC
Q 015650          308 SLAF---SSNAQWLAVSSDK  324 (403)
Q Consensus       308 ~l~~---s~d~~~l~s~~~d  324 (403)
                      +++|   ++|++.|+.++..
T Consensus       255 ~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEECCSTTTTTEEEEEECT
T ss_pred             EEEEcCCCCCCCEEEEECCC
Confidence            9999   6788888766543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.25  E-value=2.8e-11  Score=110.38  Aligned_cols=152  Identities=13%  Similarity=0.043  Sum_probs=115.6

Q ss_pred             eEEEEecCceEEE-ecCeEEEEEcCCceeeeEeec-----cCCCceeEEEeeCCCeEEEEeeC------CccCeEEEEEc
Q 015650          179 RSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIET-----IANPKGLCAVSQGVGSLVLVCPG------LQKGQVRVEHY  246 (403)
Q Consensus       179 ~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g------~~d~~i~v~d~  246 (403)
                      ..+.|.+++.++. .++.|++||+.+++....+..     +...+..+.|+||++.++++...      +.++.+.+||+
T Consensus        20 ~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          20 YSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             cCCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            4578999999888 588999999999887655543     34568899999999987666421      23578999999


Q ss_pred             cCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC----------------CcccEEEEE
Q 015650          247 ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA----------------DRAEIYSLA  310 (403)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~----------------~~~~v~~l~  310 (403)
                      .++....+..+...+..+.|||||++||... ++. +++|+..+++..+....+.                ..+....+.
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~-l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1         100 NKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NND-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTE-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCcccccccCCccccccccccCcceeeEee-ccc-ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            9999888889999999999999999999865 556 9999999887765443211                112345678


Q ss_pred             eCCCCCEEEEEeCCCc-EEEEEe
Q 015650          311 FSSNAQWLAVSSDKGT-VHVFNL  332 (403)
Q Consensus       311 ~s~d~~~l~s~~~dg~-v~iwd~  332 (403)
                      |||||++|+....|.+ +..|.+
T Consensus       178 wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         178 WSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEEE
T ss_pred             ECCCCCccceeEecCCcCceEEE
Confidence            9999999998865433 444444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.24  E-value=6.5e-09  Score=90.91  Aligned_cols=257  Identities=10%  Similarity=0.027  Sum_probs=142.5

Q ss_pred             cEEEEEcC--CCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC-ceeEEEe--cCCceeEE
Q 015650          107 GFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGELS--FRSEVRSV  181 (403)
Q Consensus       107 ~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~-~~~~~~~--~~~~i~~~  181 (403)
                      +|.++.++  +++..+...........+..+++++++..++....      +.+..|.+... .......  .......+
T Consensus        15 ~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~p~~v   88 (365)
T d1jofa_          15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEASHPIGGHPRAN   88 (365)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEEEEECCSSGGGG
T ss_pred             CEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC------CcEEEEEEeCCCCeEEEeeecCCCCcEEE
Confidence            36555544  43333222221123334456888888776665544      56777776543 2322222  33455677


Q ss_pred             EEecCceE--EEe----cCeEEEEEcCC-cee---------------eeEe-eccCCCceeEEEeeCCCeEEEEeeCCcc
Q 015650          182 KLRRDRII--VVL----EQKIFVYNFAD-LKL---------------LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (403)
Q Consensus       182 ~~~~~~~~--~~~----d~~i~i~d~~~-~~~---------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (403)
                      .+++++..  ++.    .++|..+.+.. +..               .... ......+..+.++|+++.++++..  ..
T Consensus        89 ~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~--g~  166 (365)
T d1jofa_          89 DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL--TA  166 (365)
T ss_dssp             CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TT
T ss_pred             EECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeC--CC
Confidence            88888873  331    35555554322 111               1110 011223567999999998776643  34


Q ss_pred             CeEEEEEccC-CceeE---Ee--ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEE--EEEec----------
Q 015650          239 GQVRVEHYAS-KRTKF---IM--AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLL--QEVRR----------  299 (403)
Q Consensus       239 ~~i~v~d~~~-~~~~~---~~--~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~--~~~~~----------  299 (403)
                      ..|.+|+... +....   ..  ........++|+|+|++++...+ ++. |.+|++..++..  .....          
T Consensus       167 d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~-V~v~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (365)
T d1jofa_         167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSFPLIPPGIPD  245 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEEESSCTTCCC
T ss_pred             CEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCE-EEEEEecCCCceEEEEeeeeccccccccc
Confidence            5788887654 22221   11  23456889999999999877665 556 999998765422  22110          


Q ss_pred             -----CCCcccEEEEEeCCCCCEEEEEeC-C-----CcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceee
Q 015650          300 -----GADRAEIYSLAFSSNAQWLAVSSD-K-----GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS  368 (403)
Q Consensus       300 -----~~~~~~v~~l~~s~d~~~l~s~~~-d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (403)
                           ..+......+.++|||++|+++.. +     +.|..|++.....+.                             
T Consensus       246 ~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~-----------------------------  296 (365)
T d1jofa_         246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE-----------------------------  296 (365)
T ss_dssp             BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE-----------------------------
T ss_pred             cccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCcee-----------------------------
Confidence                 001124567999999999987742 2     236666666543200                             


Q ss_pred             eeeeeEEEEEeCCCceEEEecc-CCCEEEEEccC
Q 015650          369 SEWSVAQFRLVEGSPYIVAFGH-QKNTVVILGMD  401 (403)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~fs~-d~~~l~~~~~d  401 (403)
                      ....+.+..........++|+| +|++|++++.+
T Consensus       297 ~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC
Confidence            0000000111124566789998 89999888654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.8e-08  Score=83.89  Aligned_cols=206  Identities=15%  Similarity=0.084  Sum_probs=131.2

Q ss_pred             eEEEEECCCCceeEEEecCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (403)
Q Consensus       157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (403)
                      .|+|.|...+...........+...+|+|||+.|+.      ...+.+.+...+... .+..+........++|+++.++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeee
Confidence            688888765555555568888999999999999982      335777787665543 4445566777889999999877


Q ss_pred             EEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEe-CCCc-EEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGT-LVRIFNTLDGTLLQEVRRGADRAEIYS  308 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~-~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (403)
                      +.........+..+.....................+++++..++..+ .++. .|.+.++..+.......   .......
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~---~~~~~~~  175 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW---EGSQNQD  175 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC---SSSEEEE
T ss_pred             EeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeec---ccccccc
Confidence            76533222333334444444444444555556667888877665544 3443 16666766655433332   4466788


Q ss_pred             EEeCCCCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650          309 LAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (403)
Q Consensus       309 l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (403)
                      ..|+|+++.++..+ ..+...+|..+......                                   +............
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-----------------------------------~~~~~~~~~~~p~  220 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----------------------------------QVLSSTFLDETPS  220 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCE-----------------------------------EECCCSSSCEEEE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccc-----------------------------------eEeecCccccceE
Confidence            89999999887765 45566666666544211                                   1122233455568


Q ss_pred             eccCCCEEEEEccC
Q 015650          388 FGHQKNTVVILGMD  401 (403)
Q Consensus       388 fs~d~~~l~~~~~d  401 (403)
                      |||||+.|+..+..
T Consensus       221 ~SPDG~~i~f~s~~  234 (269)
T d2hqsa1         221 LAPNGTMVIYSSSQ  234 (269)
T ss_dssp             ECTTSSEEEEEEEE
T ss_pred             ECCCCCEEEEEEcC
Confidence            99999999876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=4.9e-09  Score=87.13  Aligned_cols=235  Identities=9%  Similarity=-0.027  Sum_probs=144.8

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650           86 PTLLHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (403)
Q Consensus        86 ~~i~~i~~s~d~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~  163 (403)
                      -.-..|++.++|.++++.. ..+ +..++....... ....  ........+++++++.++++....     +.+++++-
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~--~~~~~p~gvav~~~g~i~v~d~~~-----~~i~~~~~   85 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPF--NGLYQPQGLAVDGAGTVYVTDFNN-----RVVTLAAG   85 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE-ECCC--CSCCSCCCEEECTTCCEEEEETTT-----EEEEECTT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-Eecc--CCccCceEEEEcCCCCEEEeeeee-----ceeeeeee
Confidence            3458999999999777654 434 555554433222 1122  222334566777887777776665     67776665


Q ss_pred             CCCceeEEEecCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650          164 HQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (403)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (403)
                      .++..+..........++++.+++.+++.   ++.+..++...................+++.++++ ++++.  ..++.
T Consensus        86 ~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~--~~~~~  162 (260)
T d1rwia_          86 SNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNNR  162 (260)
T ss_dssp             CSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEE--GGGTE
T ss_pred             ccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-Eeeec--ccccc
Confidence            55544433334456789999999887773   55677777654332211112223346788888765 44443  35678


Q ss_pred             EEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 015650          241 VRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA  319 (403)
Q Consensus       241 i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~  319 (403)
                      |..++.+......+. ..-.....|+++++|+++++....+. |..++..... ...+... .-.....|+++++|.+++
T Consensus       163 i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~~~-~~~~~~~-~~~~P~~i~~d~~g~l~v  239 (260)
T d1rwia_         163 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTT-STVLPFT-GLNTPLAVAVDSDRTVYV  239 (260)
T ss_dssp             EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTCSC-CEECCCC-SCCCEEEEEECTTCCEEE
T ss_pred             ccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCCCCe-EEEEccC-CCCCeEEEEEeCCCCEEE
Confidence            999988776555443 44456789999999998887777777 8888754433 2233221 224678999999998877


Q ss_pred             EEeCCCcEEEEEeecCC
Q 015650          320 VSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       320 s~~~dg~v~iwd~~~~~  336 (403)
                      +-..+++|+  .+.+-+
T Consensus       240 ad~~~~rI~--~i~~~~  254 (260)
T d1rwia_         240 ADRGNDRVV--KLTSLE  254 (260)
T ss_dssp             EEGGGTEEE--EECCCG
T ss_pred             EECCCCEEE--EEeCCC
Confidence            766666555  444433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.12  E-value=2.1e-07  Score=79.46  Aligned_cols=240  Identities=10%  Similarity=0.047  Sum_probs=150.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~  165 (403)
                      .+-.++|.++|+++++-..++ |..|+.++....  ..+. ........+++.+++.++++...+.. ..+.+...+...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~--~~~~-~~~~~p~gla~~~dG~l~va~~~~~~-~~~~i~~~~~~~  116 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--RPFV-SHKANPAAIKIHKDGRLFVCYLGDFK-STGGIFAATENG  116 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEE-CSSSSEEEEEECTTSCEEEEECTTSS-SCCEEEEECTTS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEE--EEEe-CCCCCeeEEEECCCCCEEEEecCCCc-cceeEEEEcCCC
Confidence            446899999999777765444 777776654433  2221 23445678889988876665432100 014455666555


Q ss_pred             CceeEEEec---CCceeEEEEecCceEEEec---------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650          166 SRCIGELSF---RSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (403)
Q Consensus       166 ~~~~~~~~~---~~~i~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (403)
                      +........   ......+++.++|.+.+.|         +.++.++.. ++.+..+......-..++|+++++.+|++-
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEec
Confidence            554444432   3457789999999877742         246666543 333333322223346689999998887765


Q ss_pred             eCCccCeEEEEEccCC--ceeEE-------eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC---
Q 015650          234 PGLQKGQVRVEHYASK--RTKFI-------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA---  301 (403)
Q Consensus       234 ~g~~d~~i~v~d~~~~--~~~~~-------~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~---  301 (403)
                        ...+.|..|++...  .....       .........|+++++|++.++....+. |.+|| .+|+.+..+....   
T Consensus       196 --~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~-p~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         196 --TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFN-KRGYPIGQILIPGRDE  271 (319)
T ss_dssp             --GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEEC-TTSCEEEEEECTTGGG
T ss_pred             --ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEEC-CCCcEEEEEeCCCcCC
Confidence              45789999998652  11111       111233578999999998888878888 99999 5799988887432   


Q ss_pred             -CcccEEEEEeCCCCCEEEEEeC----CCcEEEEEeecC
Q 015650          302 -DRAEIYSLAFSSNAQWLAVSSD----KGTVHVFNLKVN  335 (403)
Q Consensus       302 -~~~~v~~l~~s~d~~~l~s~~~----dg~v~iwd~~~~  335 (403)
                       +...+++++|.+++..+++...    .+.-.||.++..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  310 (319)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence             2235789999998887766543    233445555443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.08  E-value=1.7e-07  Score=79.76  Aligned_cols=238  Identities=9%  Similarity=0.057  Sum_probs=145.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCC--------cEEEEEcCCCeeEEEEecc-cCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650           87 TLLHISFNQDHGCFAAGTDH--------GFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~--------~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (403)
                      ..-.++|.++|+++++....        .|..|+.+++......... ......-..+.+.+++..++.++..     +.
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-----~~   93 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-----LG   93 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----TE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-----Ce
Confidence            35678999999988875432        2666666655443222111 0112235678888876433333333     56


Q ss_pred             EEEEECCCCceeEEEe-cC----CceeEEEEecCceEEEec------------------CeEEEEEcCCceeeeEeeccC
Q 015650          158 VMIWDDHQSRCIGELS-FR----SEVRSVKLRRDRIIVVLE------------------QKIFVYNFADLKLLHQIETIA  214 (403)
Q Consensus       158 i~iwd~~~~~~~~~~~-~~----~~i~~~~~~~~~~~~~~d------------------~~i~i~d~~~~~~~~~~~~~~  214 (403)
                      |..++...+....... ..    ...+.+++.++|.+.++|                  +.|+.++. .++....... .
T Consensus        94 i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~-~  171 (314)
T d1pjxa_          94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA-F  171 (314)
T ss_dssp             EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE-E
T ss_pred             EEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC-c
Confidence            8888865543222111 11    135789999999887743                  24555553 3443333222 2


Q ss_pred             CCceeEEEeeCCC----eEEEEeeCCccCeEEEEEccCC-cee---EEe---e-cCCceEEEEEcCCCCEEEEEeCCCcE
Q 015650          215 NPKGLCAVSQGVG----SLVLVCPGLQKGQVRVEHYASK-RTK---FIM---A-HDSRIACFALTQDGQLLATSSTKGTL  282 (403)
Q Consensus       215 ~~~~~~~~~~~~~----~~~~~~~g~~d~~i~v~d~~~~-~~~---~~~---~-~~~~i~~~~~sp~g~~l~s~~~dg~~  282 (403)
                      ..-..++++++++    .++++  ....+.|..||+... .+.   .+.   . +......|++..+|++.++....+. 
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~--d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~-  248 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVA--ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-  248 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEE--ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-
T ss_pred             ceeeeeEECCCCCcceeEEEEE--eecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE-
Confidence            2235688988765    24443  346788888887642 221   111   1 2234568999999998887777788 


Q ss_pred             EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEE-EEEeCCCcEEEEEeecCC
Q 015650          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL-AVSSDKGTVHVFNLKVNS  336 (403)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l-~s~~~dg~v~iwd~~~~~  336 (403)
                      |.+||.+.++.+..+..+  ....++++|.||++.| ++.+.+|.|..+++....
T Consensus       249 I~~~dp~~g~~~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         249 IEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEEEeCCCCEEEEEEECC--CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            999998888777667642  3578999999999855 555677888777776544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.05  E-value=6.8e-07  Score=75.19  Aligned_cols=206  Identities=11%  Similarity=0.044  Sum_probs=137.5

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccC----CCceeEEEeeCCCeEE
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIA----NPKGLCAVSQGVGSLV  230 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  230 (403)
                      +.|..||..+++. ..+.....+.++++.+++.+++ ....|.++|..+++.........    .....+.+.++++ ++
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw  117 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LW  117 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EE
T ss_pred             CEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EE
Confidence            7899999887754 4556677889999999988777 67789999999886543332111    1234566677664 34


Q ss_pred             EEeeC--CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCC------CcEEEEEecCC
Q 015650          231 LVCPG--LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLD------GTLLQEVRRGA  301 (403)
Q Consensus       231 ~~~~g--~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~------~~~~~~~~~~~  301 (403)
                      +....  ...+.-.+|.+..+....+...-.....++|+++++.|+.+. ..+. |+.|++..      ++....+....
T Consensus       118 ~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~-I~~~~~d~~~~~~~~~~~~~~~~~~  196 (295)
T d2ghsa1         118 IGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-LMRVPLDARTGLPTGKAEVFIDSTG  196 (295)
T ss_dssp             EEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-EEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred             EEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccce-eeEeeecccccccccceEEEeccCc
Confidence            43311  112345667766666655554445568899999999776554 4555 88888642      12222222212


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC
Q 015650          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (403)
                      ..+....+++..+|.+.++.-..+.|..||- +++.                                   +..+.++..
T Consensus       197 ~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~-----------------------------------~~~i~lP~~  240 (295)
T d2ghsa1         197 IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH-----------------------------------IARYEVPGK  240 (295)
T ss_dssp             SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE-----------------------------------EEEEECSCS
T ss_pred             ccccccceEEcCCCCEEeeeeCCCceEEecC-CCcE-----------------------------------eeEecCCCC
Confidence            3456789999999998888778888999984 4552                                   445677777


Q ss_pred             CceEEEec-cCCCEEEEEcc
Q 015650          382 SPYIVAFG-HQKNTVVILGM  400 (403)
Q Consensus       382 ~~~~~~fs-~d~~~l~~~~~  400 (403)
                      .+++++|. +|.+.|++.++
T Consensus       241 ~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         241 QTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             BEEEEEEESTTSCEEEEEEB
T ss_pred             ceEEEEEeCCCCCEEEEEEC
Confidence            89999995 78888877643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.04  E-value=4.4e-07  Score=77.35  Aligned_cols=227  Identities=15%  Similarity=0.083  Sum_probs=140.4

Q ss_pred             EEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe-------cCeEEEEEcCC
Q 015650          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-------EQKIFVYNFAD  203 (403)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-------d~~i~i~d~~~  203 (403)
                      +-.+.|.+++.++++....     +.|..|+...++....+. .......+++.+||.+++.       .+.+...+...
T Consensus        42 lEG~~~D~~G~Ly~~D~~~-----g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFE-----GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             EEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cEeCEECCCCCEEEEECCC-----CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3567777777655555555     889888877766555544 5667889999999987763       22455555554


Q ss_pred             ceeeeEeecc--CCCceeEEEeeCCCeEEEEeeCC----ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEE-
Q 015650          204 LKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-  276 (403)
Q Consensus       204 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~-  276 (403)
                      +.........  ......+++.++++ +++.....    ..+.+..++...+.+..+...-...+.|+|+|+++.|+.+ 
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence            4433333221  22334577888775 44432110    1234555565555555554444556889999999877555 


Q ss_pred             eCCCcEEEEEEcCC-CcEEEEE-----ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCC
Q 015650          277 STKGTLVRIFNTLD-GTLLQEV-----RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT  350 (403)
Q Consensus       277 ~~dg~~i~iwd~~~-~~~~~~~-----~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  350 (403)
                      +..+. |+.||+.. +......     ...........|++..+|++.++....+.|.+|+- +++.             
T Consensus       196 ~~~~~-I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~-------------  260 (319)
T d2dg1a1         196 TTANR-LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYP-------------  260 (319)
T ss_dssp             GGGTE-EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCE-------------
T ss_pred             ccCCc-eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcE-------------
Confidence            45666 99998763 2221111     11111234678999999998888888999999994 5553             


Q ss_pred             CcccccccccccccceeeeeeeeEEEEEeC------CCceEEEeccCCCEEEEEccC
Q 015650          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVE------GSPYIVAFGHQKNTVVILGMD  401 (403)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~fs~d~~~l~~~~~d  401 (403)
                                            +.++.++.      ..+++++|.++.+.+++...|
T Consensus       261 ----------------------l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         261 ----------------------IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             ----------------------EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ----------------------EEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence                                  22233332      246788998888877776544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.1e-08  Score=89.31  Aligned_cols=224  Identities=8%  Similarity=0.023  Sum_probs=137.2

Q ss_pred             EEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC-CCC---CCCceEEEEECCCCc
Q 015650           92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQ---YPLNKVMIWDDHQSR  167 (403)
Q Consensus        92 ~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~---~~~~~i~iwd~~~~~  167 (403)
                      .|.+++.++....++.|.+|++.+++..............+....+++|+..++.... .+.   ...+.+.++|+.+++
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            5778887776555666999999877665333332123345667778888765443211 111   012789999999887


Q ss_pred             eeEEEe---cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCC------------------CceeEEEee
Q 015650          168 CIGELS---FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN------------------PKGLCAVSQ  224 (403)
Q Consensus       168 ~~~~~~---~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~------------------~~~~~~~~~  224 (403)
                      ......   ....+....|+|||..++  .++.|++.+..++..++.......                  .-..+.|+|
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            544322   344566789999999888  689999999877665544422111                  113567899


Q ss_pred             CCCeEEEEeeCCccC---------------------------------eEEEEEccCCceeEEe-------ecCCceEEE
Q 015650          225 GVGSLVLVCPGLQKG---------------------------------QVRVEHYASKRTKFIM-------AHDSRIACF  264 (403)
Q Consensus       225 ~~~~~~~~~~g~~d~---------------------------------~i~v~d~~~~~~~~~~-------~~~~~i~~~  264 (403)
                      |++.++++.  ..+.                                 .+.++|+.++......       .....+..+
T Consensus       183 Dgk~iaf~~--~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~  260 (465)
T d1xfda1         183 DGTRLAYAA--INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV  260 (465)
T ss_dssp             TSSEEEEEE--EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred             CCCeEEEEE--ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence            999876653  1222                                 2444555443322111       112246788


Q ss_pred             EEcCCCCEEEEEeC-CC--cEEEEEEcCCCcEEEEEecCCCcccE----EEEEeCCCCCEE
Q 015650          265 ALTQDGQLLATSST-KG--TLVRIFNTLDGTLLQEVRRGADRAEI----YSLAFSSNAQWL  318 (403)
Q Consensus       265 ~~sp~g~~l~s~~~-dg--~~i~iwd~~~~~~~~~~~~~~~~~~v----~~l~~s~d~~~l  318 (403)
                      .|+|++++++.... +.  ..|.++|..++++...+... ....|    ....|++||+.+
T Consensus       261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSE
T ss_pred             EEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-CCceEeccCCceeEccCCCee
Confidence            99999987765443 22  12888999999876655432 22222    346799999854

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.01  E-value=6.4e-08  Score=82.11  Aligned_cols=193  Identities=9%  Similarity=-0.023  Sum_probs=119.2

Q ss_pred             eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCce-
Q 015650          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-  205 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~-  205 (403)
                      ..+..+++.+++.++++...+     ++|+.|+.. ++..........+.+++|.+||.+++   .++.+..++..... 
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~-----~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEV-----GEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTT-----TEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcCCEEECCCCCEEEEeCCC-----CEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence            356788999999999888877     888888844 55444445778899999999998777   35677777765422 


Q ss_pred             eeeEeec--cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeec-----------CCceEEEEEcCCCCE
Q 015650          206 LLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-----------DSRIACFALTQDGQL  272 (403)
Q Consensus       206 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~-----------~~~i~~~~~sp~g~~  272 (403)
                      ....+..  .......+++.++++  ++++ ...++.+..++............           ......+.++. +.+
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~--~~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l  177 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQ--YLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFL  177 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSE--EEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEE
T ss_pred             ceeeccccCCccccceeEEccCCC--EEee-ccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cce
Confidence            1122211  223345566766653  3333 23567788888776554332211           12345566643 233


Q ss_pred             EEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       273 l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~  333 (403)
                      +++.+..+. |+.++.....................|+++++|.++++...++.|..++.+
T Consensus       178 ~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         178 YVSNTEKML-LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EEEETTTTE-EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             eeecCCCCe-EEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            445555666 888887654322111100022345679999999988887788888887654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.92  E-value=9.7e-07  Score=74.95  Aligned_cols=229  Identities=10%  Similarity=0.042  Sum_probs=133.0

Q ss_pred             EEEeeeCCeEEEeeCCCC--CCCCCceEEEEECCCCceeEEEe-----cCCceeEEEEecCceEE-Ee--cCeEEEEEcC
Q 015650          133 VEMLFRCNILALVGGGPD--PQYPLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRRDRIIV-VL--EQKIFVYNFA  202 (403)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d--~~~~~~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~-~~--d~~i~i~d~~  202 (403)
                      -.++|.+++.++++....  ...+.++|..||..++.......     .......+.|.+++..+ +.  .+.|..++..
T Consensus        21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~  100 (314)
T d1pjxa_          21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD  100 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred             eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCC
Confidence            345777877665543221  00112678889988776543332     12345689999998544 44  4568888876


Q ss_pred             CceeeeEeecc-CC---CceeEEEeeCCCeEEEEeeCC-------------ccCeEEEEEccCCceeEEeecCCceEEEE
Q 015650          203 DLKLLHQIETI-AN---PKGLCAVSQGVGSLVLVCPGL-------------QKGQVRVEHYASKRTKFIMAHDSRIACFA  265 (403)
Q Consensus       203 ~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~g~-------------~d~~i~v~d~~~~~~~~~~~~~~~i~~~~  265 (403)
                      ........... ..   ....+++.++++ +++.-.+.             ..|.|..++... ....+...-...+.++
T Consensus       101 g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~pNGi~  178 (314)
T d1pjxa_         101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFPNGIA  178 (314)
T ss_dssp             SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSEEEEE
T ss_pred             CcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCcceeeeeE
Confidence            54322111111 11   234578887764 34432110             123444444433 3333333334457899


Q ss_pred             EcCCCC----EE-EEEeCCCcEEEEEEcCCCcEEE------EEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          266 LTQDGQ----LL-ATSSTKGTLVRIFNTLDGTLLQ------EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       266 ~sp~g~----~l-~s~~~dg~~i~iwd~~~~~~~~------~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      |+|++.    +| ++-+..+. |+.||+.....+.      .+.. ........|++..+|+++++....+.|++||.+.
T Consensus       179 ~~~d~d~~~~~lyv~d~~~~~-i~~~d~~~~g~~~~~~~~~~~~~-~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         179 VRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             ECCCCCcceeEEEEEeecccc-eEEeeccCccccceeeEEEEccc-cccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            998775    44 44456666 8888875432222      1111 1223467899999999888887889999998776


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650          335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (403)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~  400 (403)
                      ++.                                   ...+..+...++.++|.||++.|++...
T Consensus       257 g~~-----------------------------------~~~i~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         257 GQP-----------------------------------KMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             BSC-----------------------------------SEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CEE-----------------------------------EEEEECCCCCEEEEEEeCCCCEEEEEEC
Confidence            652                                   1224455567888999999988766544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.90  E-value=3.4e-06  Score=70.80  Aligned_cols=214  Identities=10%  Similarity=0.062  Sum_probs=143.6

Q ss_pred             EEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           90 HISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        90 ~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      +..|.+....|...+  .+.|.-|+.++++... ..+    ...+.++.+..++.++++..       ..|.++|..+++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~----~~~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL----PFMGSALAKISDSKQLIASD-------DGLFLRDTATGV   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC----SSCEEEEEEEETTEEEEEET-------TEEEEEETTTCC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EEC----CCCcEEEEEecCCCEEEEEe-------CccEEeecccce
Confidence            456887555444443  4448888887765432 233    34566788878887777654       458999999887


Q ss_pred             eeEEEe--c---CCceeEEEEecCceEEEe-------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650          168 CIGELS--F---RSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (403)
Q Consensus       168 ~~~~~~--~---~~~i~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (403)
                      ......  .   ...+..+.+.++|.+.+.       .+.-.+|.+..++....+.. ...-..++++++++.++++-  
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~d--  166 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVD--  166 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEE--
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEee--
Confidence            654433  1   235788999999987773       23456677667765544433 23346789999998877765  


Q ss_pred             CccCeEEEEEccCC------ceeEE---eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccE
Q 015650          236 LQKGQVRVEHYASK------RTKFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (403)
Q Consensus       236 ~~d~~i~v~d~~~~------~~~~~---~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (403)
                      +..+.|..|++...      +...+   ....+....++++.+|++.++.-..+. |..|| .+++.+..+....  ..+
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-V~~~d-p~G~~~~~i~lP~--~~~  242 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYD-TDGNHIARYEVPG--KQT  242 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEEC-TTCCEEEEEECSC--SBE
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-eEEec-CCCcEeeEecCCC--Cce
Confidence            45688999887541      11221   123456789999999997776666777 99999 5799999888532  468


Q ss_pred             EEEEeC-CCCCEEEEEe
Q 015650          307 YSLAFS-SNAQWLAVSS  322 (403)
Q Consensus       307 ~~l~~s-~d~~~l~s~~  322 (403)
                      ++++|- +|.+.|+..+
T Consensus       243 T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         243 TCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEEEESTTSCEEEEEE
T ss_pred             EEEEEeCCCCCEEEEEE
Confidence            999995 7777665443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=1.2e-06  Score=73.14  Aligned_cols=189  Identities=13%  Similarity=0.135  Sum_probs=125.0

Q ss_pred             eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec-------CCceeEEEEecC-ceEEE----ecCeEEE
Q 015650          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLRRD-RIIVV----LEQKIFV  198 (403)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~-~~~~~----~d~~i~i  198 (403)
                      ....+++++++.++++....     +.|++||. +|+.+..+..       ......+++..+ +..++    .++.|..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n-----~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNN-----HRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGG-----TEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccEEEEcCCCCEEEEECCC-----CEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccc
Confidence            45788888887777765555     78999994 5777776641       112345555544 34444    2557888


Q ss_pred             EEcCCceeeeEeecc-CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe--ecCCceEEEEEcCCCCEEEE
Q 015650          199 YNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLAT  275 (403)
Q Consensus       199 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~s  275 (403)
                      ++. .++....+... ......+++.+++. ++++.  ...+.+.+++.....+..+.  .+......+++.++|+++++
T Consensus        98 ~~~-~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~--~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_          98 YNQ-YGQFVRKFGATILQHPRGVTVDNKGR-IIVVE--CKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             ECT-TSCEEEEECTTTCSCEEEEEECTTSC-EEEEE--TTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             ccc-cccceeecCCCcccccceeccccCCc-EEEEe--eccceeeEeccCCceeecccccccccccceeeeccceeEEee
Confidence            875 56666655322 23335567766654 33332  34567888887766555542  35567889999999998888


Q ss_pred             EeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCcEEEEE
Q 015650          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFN  331 (403)
Q Consensus       276 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~-dg~v~iwd  331 (403)
                      ....+. |++||. +++.+.++...........|++.++|+++++-.. ++.|.+|+
T Consensus       174 d~~~~~-V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         174 DNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             EGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             eccccc-eeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence            888888 999995 6777777753323456789999999997776543 45688887

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=7e-07  Score=73.70  Aligned_cols=193  Identities=9%  Similarity=0.002  Sum_probs=116.4

Q ss_pred             eeEEEEeeeCCeEEEe-eCCCCCCCCCceEEEEECCCCceeEE-EecCCceeEEEEecCceEEEe---cCeEEEEEcCCc
Q 015650          130 IGVVEMLFRCNILALV-GGGPDPQYPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL  204 (403)
Q Consensus       130 ~~v~~~~~~~~~~~~~-s~~~d~~~~~~~i~iwd~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~  204 (403)
                      ..-..+++.+++..++ .....     +.+..++......... .........+++.+++.++++   .+.+++++-.+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSS-----CEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCC-----CEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            3456788888776544 44444     6676666443322211 112345678999999887774   335555554444


Q ss_pred             eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeCCCcEE
Q 015650          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLV  283 (403)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~dg~~i  283 (403)
                      ..+..... ......+++.++++ ++++-  ..+..+..++.......... ........++++++|+++++...++. |
T Consensus        89 ~~~~~~~~-~~~p~~iavd~~g~-i~v~d--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~-i  163 (260)
T d1rwia_          89 QTVLPFDG-LNYPEGLAVDTQGA-VYVAD--RGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-V  163 (260)
T ss_dssp             CEECCCCS-CCSEEEEEECTTCC-EEEEE--GGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTE-E
T ss_pred             eeeeeeee-eeecccccccccce-eEeec--cccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccc-c
Confidence            43332222 23345677777664 33332  34556777766554443322 22344578999999998888787888 9


Q ss_pred             EEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (403)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~  334 (403)
                      ..+|....... .+... .......|++.++|.++++....+.|..++...
T Consensus       164 ~~~d~~~~~~~-~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         164 VKLEAESNNQV-VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEECTTTCCEE-ECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             cccccccceee-eeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            99997654433 33221 335678999999999888887888887776543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=3.1e-05  Score=62.68  Aligned_cols=217  Identities=12%  Similarity=0.163  Sum_probs=139.3

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  187 (403)
                      |.|.|+........+...  ....+  |.+...-++|=++        .++.++|+++.+.++.+...+.|.--.|-.+.
T Consensus        47 VvIidl~n~~~~~Rrpi~--AdsAI--MhP~~~IiALrag--------~~LQiFnletK~klks~~~~e~VvfWkWis~~  114 (327)
T d1utca2          47 VVIIDMNDPSNPIRRPIS--ADSAI--MNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN  114 (327)
T ss_dssp             EEEEETTSTTSCEEEECC--CSEEE--ECSSSSEEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEESSSS
T ss_pred             EEEEECCCCCcceecccc--hhhhh--cCCCCcEEEEecC--------CeEEEEehhHhhhhceEEcCCCcEEEEecCCC
Confidence            899999766655555554  22222  2233333333332        68999999999999999988888888887766


Q ss_pred             eEEE-ecCeEEEEEcCCc-eeeeEeeccC--CCceeEEEeeC--CCeEEEEee----CCccCeEEEEEccCCceeEEeec
Q 015650          188 IIVV-LEQKIFVYNFADL-KLLHQIETIA--NPKGLCAVSQG--VGSLVLVCP----GLQKGQVRVEHYASKRTKFIMAH  257 (403)
Q Consensus       188 ~~~~-~d~~i~i~d~~~~-~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~----g~~d~~i~v~d~~~~~~~~~~~~  257 (403)
                      .+.. ++..|+-|+++.. .+.+.++.|.  .....+.+..+  .+.+++..-    +.-.|.+.+|..+.+..+.+++|
T Consensus       115 ~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGh  194 (327)
T d1utca2         115 TVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH  194 (327)
T ss_dssp             EEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCS
T ss_pred             EEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccce
Confidence            6555 8999999999542 4555554433  23345555444  444333321    12347889999999999999999


Q ss_pred             CCceEEEEEcCCC---CEEEEEeC---CCcEEEEEEcCCC--------cEEEEEe--cCCCcccEEEEEeCCCCCEEEEE
Q 015650          258 DSRIACFALTQDG---QLLATSST---KGTLVRIFNTLDG--------TLLQEVR--RGADRAEIYSLAFSSNAQWLAVS  321 (403)
Q Consensus       258 ~~~i~~~~~sp~g---~~l~s~~~---dg~~i~iwd~~~~--------~~~~~~~--~~~~~~~v~~l~~s~d~~~l~s~  321 (403)
                      ......+.+.-+.   .+++.+..   .+. ++|.++...        +....+.  ......-..+|..|+....+..-
T Consensus       195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~k-LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         195 AASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             EEEEEEECCTTCSSCEEEEEEEEEETTEEE-EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeEEEEcCCCCCCceEEEEEECCCCCcE-EEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            8766666553221   23433322   245 888887542        1111121  11122345678888888899999


Q ss_pred             eCCCcEEEEEeecCCC
Q 015650          322 SDKGTVHVFNLKVNSG  337 (403)
Q Consensus       322 ~~dg~v~iwd~~~~~~  337 (403)
                      +.-|.|++||++++..
T Consensus       274 TK~G~i~lyDleTgt~  289 (327)
T d1utca2         274 TKYGYIHLYDLETGTC  289 (327)
T ss_dssp             ETTSEEEEEETTTCCE
T ss_pred             ecCcEEEEEEcccccE
Confidence            9999999999999984

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=7.7e-07  Score=79.93  Aligned_cols=191  Identities=7%  Similarity=0.025  Sum_probs=117.2

Q ss_pred             eeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe----cCCceeEEEEecCceEEE--e----------cCeEEEE
Q 015650          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVV--L----------EQKIFVY  199 (403)
Q Consensus       136 ~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~--~----------d~~i~i~  199 (403)
                      .|.+++.++.. ..+     |.|.+||+.+++....+.    ....+....|+||+++++  .          .+.+.+|
T Consensus        23 ~W~~~~~~~~~-~~~-----g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          23 KWISDTEFIYR-EQK-----GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CBSSSSCBCCC-CSS-----SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             EEeCCCcEEEE-eCC-----CcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            45566554443 344     889999999887644444    234677889999998776  2          3578999


Q ss_pred             EcCCceeeeEe--eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe--ecCCc---------------
Q 015650          200 NFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSR---------------  260 (403)
Q Consensus       200 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~---------------  260 (403)
                      |+.+++.....  ......+....|+|+++.++++.    ++.|.+.+..++....+.  +....               
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~----~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~  172 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEEe----cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhc
Confidence            99987653322  22234456688999999877763    567888877665443332  11111               


Q ss_pred             --eEEEEEcCCCCEEEEEeCCCcE---------------------------------EEEEEcCCCcEEEEEecC----C
Q 015650          261 --IACFALTQDGQLLATSSTKGTL---------------------------------VRIFNTLDGTLLQEVRRG----A  301 (403)
Q Consensus       261 --i~~~~~sp~g~~l~s~~~dg~~---------------------------------i~iwd~~~~~~~~~~~~~----~  301 (403)
                        -..+.|||||++||....|.+.                                 +.|+|+.++.........    .
T Consensus       173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~  252 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (465)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             cccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcc
Confidence              2467899999999986543221                                 344444433221111100    0


Q ss_pred             CcccEEEEEeCCCCCEEEEEeC-C---CcEEEEEeecCC
Q 015650          302 DRAEIYSLAFSSNAQWLAVSSD-K---GTVHVFNLKVNS  336 (403)
Q Consensus       302 ~~~~v~~l~~s~d~~~l~s~~~-d---g~v~iwd~~~~~  336 (403)
                      ....+..+.|++++++++.... +   ..|.++|..+++
T Consensus       253 ~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             ccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence            1124678899999987665432 2   247777777766

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=3.7e-05  Score=62.28  Aligned_cols=224  Identities=13%  Similarity=0.168  Sum_probs=145.7

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEee-eCCeEEEeeCCCCCCCCCceEEEEECCCC-ce
Q 015650           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQS-RC  168 (403)
Q Consensus        91 i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~i~iwd~~~~-~~  168 (403)
                      .-.+|..+.||.-+...+.|||+++.+++....+.    ..|.-+.| +++.+.+++.        ..|+-|+++.. .+
T Consensus        68 AIMhP~~~IiALrag~~LQiFnletK~klks~~~~----e~VvfWkWis~~~L~lVT~--------taVYHW~~~g~s~P  135 (327)
T d1utca2          68 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT----DDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP  135 (327)
T ss_dssp             EEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS----SCCCEEEESSSSEEEEECS--------SEEEEEESSSSCCC
T ss_pred             hhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcC----CCcEEEEecCCCEEEEEcC--------CceEEEcccCCCCc
Confidence            34678888888877677999999999888555554    46777777 4566777776        68999998543 56


Q ss_pred             eEEEe-c----CCceeEEEEecCceEEE----------ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeC--CCeEE-
Q 015650          169 IGELS-F----RSEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG--VGSLV-  230 (403)
Q Consensus       169 ~~~~~-~----~~~i~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-  230 (403)
                      .+.+. |    ...|..-..+++.++++          ..|.+.+|..+.+ .-+.+++|......+.+.-+  ...++ 
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  214 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFC  214 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred             hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEE
Confidence            66666 3    34677778888888877          1578899997653 34455555433222222111  11111 


Q ss_pred             EEeeCCccCeEEEEEccCCc-------eeEEe------ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          231 LVCPGLQKGQVRVEHYASKR-------TKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       231 ~~~~g~~d~~i~v~d~~~~~-------~~~~~------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      ++.-+...+.+++.++....       .+...      ...+-..++..++.-..++.-+.-|. |.+||++++.++..-
T Consensus       215 fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~-i~lyDleTgt~i~~n  293 (327)
T d1utca2         215 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMN  293 (327)
T ss_dssp             EEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE-EEEEEcccccEEEEe
Confidence            22223344788898886521       11111      12344567888888888989999999 999999999998877


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 015650          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (403)
Q Consensus       298 ~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw  330 (403)
                      +-  ....|..-+-..+..-+++...+|.|.--
T Consensus       294 RI--s~~~iF~~a~~~~~~Gi~~VNr~GqVl~v  324 (327)
T d1utca2         294 RI--SGETIFVTAPHEATAGIIGVNRKGQVLSV  324 (327)
T ss_dssp             EC--CSSCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             ec--CCCceEEeccCCCCceEEEECCCCeEEEE
Confidence            65  33556644444454455555677776543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.68  E-value=3.2e-06  Score=70.09  Aligned_cols=232  Identities=6%  Similarity=-0.067  Sum_probs=128.9

Q ss_pred             EEcCC--CCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC-CCCCCCceEEEEECCCCce
Q 015650           92 SFNQD--HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIWDDHQSRC  168 (403)
Q Consensus        92 ~~s~d--~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~i~iwd~~~~~~  168 (403)
                      ..+||  |+.+|...++.|.+.++++++..   .+. .+........|+||+..|+-... +.......|.+++..+++.
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~---~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR---KIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE---EEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE---EEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            45788  99999888777888898877654   233 35566788899999877663321 1000113578888777765


Q ss_pred             eEEEe-------cCCceeEEEEecCceEEEe---------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650          169 IGELS-------FRSEVRSVKLRRDRIIVVL---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (403)
Q Consensus       169 ~~~~~-------~~~~i~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (403)
                      .+...       .........|+||++.++.         ...+...+...+.....   .... ....+.+++...+..
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~  156 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGP-ATHILFADGRRVIGR  156 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCS-CSEEEEETTEEEEEE
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCc-cceeeecCCCeEEEe
Confidence            44322       1234567889999988872         12355566554443221   1122 223444554443333


Q ss_pred             eeCCc---------cCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCcEEEEEecCCC
Q 015650          233 CPGLQ---------KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRRGAD  302 (403)
Q Consensus       233 ~~g~~---------d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~~~~~~~~~~  302 (403)
                      .....         .....+......................++++.. +.....++ ..|.++|+.+++..+ +... .
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~-lt~~-~  233 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLRK-HTSF-T  233 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCEE-CCCC-C
T ss_pred             eccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecccc-ceecccccccceEEEeCCCCceEE-eecC-C
Confidence            21100         1112222233333333344444555566666542 22232222 228888887666543 3321 1


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      ...  ...|+|||+.|+.. .++.|+++|+++++.
T Consensus       234 ~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         234 DYY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKI  265 (281)
T ss_dssp             SSC--EEEEEESSSCEEEE-ETTEEEEECTTTCCE
T ss_pred             Ccc--cccCcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence            222  34689999998764 468899999988874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.23  E-value=0.00029  Score=60.19  Aligned_cols=187  Identities=10%  Similarity=0.069  Sum_probs=118.9

Q ss_pred             eEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cC---------------------------------------Cc--e
Q 015650          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR---------------------------------------SE--V  178 (403)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~---------------------------------------~~--i  178 (403)
                      ...+.+++..     |.|+|+-+.+++.++.+. +.                                       +.  =
T Consensus        13 yy~f~SgG~s-----G~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH   87 (459)
T d1fwxa2          13 YYGFWSSGQS-----GEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH   87 (459)
T ss_dssp             EEEEECCBTT-----CEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC
T ss_pred             EEEEeeCCcc-----ceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC
Confidence            4456777777     899999888777666543 10                                       00  1


Q ss_pred             eEEEEec---CceEEE----ecCeEEEEEcCCceeeeEeecc-CCCceeEEEeeCCCeEEEEeeCC--------------
Q 015650          179 RSVKLRR---DRIIVV----LEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL--------------  236 (403)
Q Consensus       179 ~~~~~~~---~~~~~~----~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~--------------  236 (403)
                      ..+.+..   ||++++    .+++|-+.|+++.+..+.+... ......++..++++..|+++.+.              
T Consensus        88 P~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          88 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             CcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            1344443   789888    3679999999999886655432 23344566666777777776432              


Q ss_pred             ---ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCc--------------EEEEE-------------
Q 015650          237 ---QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--------------LVRIF-------------  286 (403)
Q Consensus       237 ---~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~--------------~i~iw-------------  286 (403)
                         ..+.+.++|..+.++.....-.+....+.++++|+++++.+.+..              .+.++             
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence               113456778877665443334456778999999999988775311              03333             


Q ss_pred             ----------EcCC---CcEEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecC
Q 015650          287 ----------NTLD---GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (403)
Q Consensus       287 ----------d~~~---~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~  335 (403)
                                |.+.   ...++.+..   ......+.++|||+++++++ .+.++.|+|+++-
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             cEEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence                      3322   122223332   13345789999999987776 7889999999743

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=0.0011  Score=53.85  Aligned_cols=229  Identities=7%  Similarity=-0.056  Sum_probs=136.4

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeE---EEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCceeEEE
Q 015650           97 HGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (403)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~  172 (403)
                      |.+|+.+..+.|+-.+++.....   ....+. .+...+..++|... ...+.+....     +.|+..++..+.....+
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~-~~~~~~~~ld~D~~~~~iywsd~~~-----~~I~~~~l~g~~~~~v~   74 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTII   74 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEE
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccc-cCCCcEEEEEEEeCCCEEEEEECCC-----CeEEEEEcccCCcEEEE
Confidence            45677776667777777543311   001111 23345667777643 3333343444     78888888766554444


Q ss_pred             e-cCCceeEEEEecCceEE-E---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650          173 S-FRSEVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (403)
Q Consensus       173 ~-~~~~i~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~  247 (403)
                      . ....+.++++..-+..+ .   ..+.|.+.++........+.........+++.|....++....+.....|...++.
T Consensus        75 ~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d  154 (263)
T d1npea_          75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (263)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC
Confidence            4 33567888887543333 3   25689999987544333333333456788999988877766545444456666777


Q ss_pred             CCceeEEe-ecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEE-EEeCC
Q 015650          248 SKRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA-VSSDK  324 (403)
Q Consensus       248 ~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~-s~~~d  324 (403)
                      ......+. ..-.....|++++.++.|+.+. ..+. |...|+........+.+.   ....+|++.  +.+|. +-...
T Consensus       155 G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~-I~~~~~~g~~~~~v~~~~---~~P~~lav~--~~~lYwtd~~~  228 (263)
T d1npea_         155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKT  228 (263)
T ss_dssp             SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTT
T ss_pred             CCCceeeeeecccccceEEEeecCcEEEEEeCCCCE-EEEEECCCCCeEEEECCC---CCcEEEEEE--CCEEEEEECCC
Confidence            65544443 2335668999998888776654 4566 999998655443334422   234577774  44554 44466


Q ss_pred             CcEEEEEeecCCC
Q 015650          325 GTVHVFNLKVNSG  337 (403)
Q Consensus       325 g~v~iwd~~~~~~  337 (403)
                      +.|...|..+++.
T Consensus       229 ~~I~~~~~~~g~~  241 (263)
T d1npea_         229 NSVIAMDLAISKE  241 (263)
T ss_dssp             TEEEEEETTTTEE
T ss_pred             CEEEEEECCCCcc
Confidence            7787777777663

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.13  E-value=0.00077  Score=61.40  Aligned_cols=234  Identities=9%  Similarity=0.051  Sum_probs=131.4

Q ss_pred             EEEEc-CCcEEEEEcCCCeeEEEEecccCcce-eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec--C
Q 015650          100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--R  175 (403)
Q Consensus       100 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~--~  175 (403)
                      ++.+. ++.|.-.|..+++............. .+...-.-.++..++..........|.|.-+|.++|+.+-.+..  .
T Consensus       120 v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~  199 (560)
T d1kv9a2         120 VYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG  199 (560)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred             EEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccc
Confidence            44444 44466667777776654443211110 11100011133444433222112237899999999999888751  0


Q ss_pred             -----------------------------Cc-eeEEEEecCceEEE--e--------------------cCeEEEEEcCC
Q 015650          176 -----------------------------SE-VRSVKLRRDRIIVV--L--------------------EQKIFVYNFAD  203 (403)
Q Consensus       176 -----------------------------~~-i~~~~~~~~~~~~~--~--------------------d~~i~i~d~~~  203 (403)
                                                   .. -..+++.++..++.  .                    ...|...|+++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~t  279 (560)
T d1kv9a2         200 DPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT  279 (560)
T ss_dssp             CTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred             cccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCc
Confidence                                         00 11245555544433  1                    23688889999


Q ss_pred             ceeeeEeeccCCCc---------eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC----------------
Q 015650          204 LKLLHQIETIANPK---------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD----------------  258 (403)
Q Consensus       204 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~----------------  258 (403)
                      ++.+..++...+.+         ....+..+++..-++..+..+|.+.++|..++++.....-.                
T Consensus       280 G~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~  359 (560)
T d1kv9a2         280 GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPV  359 (560)
T ss_dssp             CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEE
T ss_pred             cceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhcccc
Confidence            99887765433322         12334445554444444668999999998876643211000                


Q ss_pred             ---------C------------ceEEEEEcCCCCEEEEEeCC------------------------------------Cc
Q 015650          259 ---------S------------RIACFALTQDGQLLATSSTK------------------------------------GT  281 (403)
Q Consensus       259 ---------~------------~i~~~~~sp~g~~l~s~~~d------------------------------------g~  281 (403)
                               .            .-...+++|+..+++....+                                    |.
T Consensus       360 ~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~  439 (560)
T d1kv9a2         360 EAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA  439 (560)
T ss_dssp             ECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE
T ss_pred             ccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccc
Confidence                     0            00135677777776654322                                    45


Q ss_pred             EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                       |.-||+.+++.+-.....   ....+-.++-.+.+++.|+.||.++.+|.++++.
T Consensus       440 -l~A~D~~tGk~~W~~~~~---~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         440 -LLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             -EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             -eEEEeCCCCeEeeeccCC---CCCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence             778899999888776643   2222222233567888899999999999999995

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=0.00061  Score=58.16  Aligned_cols=224  Identities=14%  Similarity=0.102  Sum_probs=135.9

Q ss_pred             EEEEcC---CCCEEEEEcC--CcEEEEEcCCCeeEEEEecccCcceeEEEEe--eeCCeEEEeeCCCCCC--------C-
Q 015650           90 HISFNQ---DHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEML--FRCNILALVGGGPDPQ--------Y-  153 (403)
Q Consensus        90 ~i~~s~---d~~~l~~~~~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~s~~~d~~--------~-  153 (403)
                      .+.+..   ||++|.+...  ..|.+-|++..+......+.  ....+..+.  ..++..+++..+....        . 
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP--n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC--CCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence            566654   8999998873  33999999988876444554  223334333  3445555555443210        0 


Q ss_pred             ----CCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe-----c-------------CeEEEEEc----------
Q 015650          154 ----PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-----E-------------QKIFVYNF----------  201 (403)
Q Consensus       154 ----~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----d-------------~~i~i~d~----------  201 (403)
                          -.+.+.++|..+.+...++........+.++++|++++.     +             ..+.++++          
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             chhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                014467889999888888876777889999999988872     1             02334443          


Q ss_pred             -------------CCc---eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC------------ceeE
Q 015650          202 -------------ADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK------------RTKF  253 (403)
Q Consensus       202 -------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~------------~~~~  253 (403)
                                   ++.   ..+..+..... -..+.++||++.+  +++|..+.++.|+|++.-            .+..
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKs-PHGV~vSPDGKyi--~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~  323 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHL--CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  323 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESS-CCCEEECTTSSEE--EEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCC-CCceEECCCCCEE--EEeCCcCCcEEEEEehhhhhhhcccCCccccEEe
Confidence                         221   11222332222 2457889998854  445778999999999751            0111


Q ss_pred             EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC----------cEEEEEecCCCcccEEEE------EeCCCCCE
Q 015650          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------TLLQEVRRGADRAEIYSL------AFSSNAQW  317 (403)
Q Consensus       254 ~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~----------~~~~~~~~~~~~~~v~~l------~~s~d~~~  317 (403)
                      .....-.-...+|+..|.-..+---|.. |.-|++...          ..+..+..+-   .+-.+      ...|||++
T Consensus       324 e~elglgPLht~fd~~g~aytslfids~-v~kw~~~~~~~~~~~~~~~~v~~k~~v~y---~~gh~~~~~g~t~~~dgk~  399 (459)
T d1fwxa2         324 EPELGLGPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHY---QPGHLKTVMGETLDATNDW  399 (459)
T ss_dssp             CCBCCSCEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSS---CEEEEEETTTTSTTCCSSE
T ss_pred             ecccCcCccccccCCCceEEEEeeccce-EEEEecchhhhhhccccCCcceecccccc---CCCCCccCcCCcCCCCCCE
Confidence            1122334566789888865555567888 999998432          4455555431   22222      24689999


Q ss_pred             EEEEe
Q 015650          318 LAVSS  322 (403)
Q Consensus       318 l~s~~  322 (403)
                      |++..
T Consensus       400 l~~~n  404 (459)
T d1fwxa2         400 LVCLS  404 (459)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.05  E-value=0.00083  Score=61.26  Aligned_cols=236  Identities=6%  Similarity=-0.064  Sum_probs=128.4

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeEEEEecccCcc-eeEEEE-eeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec
Q 015650           97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG-IGVVEM-LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (403)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~  174 (403)
                      +++++...++.+.-.|.++++......+...+. ..+..- ... ++..++..........|.|+-+|+.+|+.+..+..
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            344443335557777888887765544421111 111111 112 23333333211011127899999999999887652


Q ss_pred             CC--------------------------------------ce-eEEEEecCceEEE--e-----------------cCeE
Q 015650          175 RS--------------------------------------EV-RSVKLRRDRIIVV--L-----------------EQKI  196 (403)
Q Consensus       175 ~~--------------------------------------~i-~~~~~~~~~~~~~--~-----------------d~~i  196 (403)
                      ..                                      .+ ...++.++..++.  .                 ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            10                                      01 2234555443333  1                 2468


Q ss_pred             EEEEcCCceeeeEeeccCCCc---------eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe-e----------
Q 015650          197 FVYNFADLKLLHQIETIANPK---------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-A----------  256 (403)
Q Consensus       197 ~i~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~-~----------  256 (403)
                      ...|+++|+.+..++...+.+         ....+..++....++.....+|.+.++|..+++..... .          
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~  354 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence            889999999988776533322         22333445544333333458899999998775542110 0          


Q ss_pred             ---------------------------cCCc--eEEEEEcCCCCEEEEEeCC----------------------------
Q 015650          257 ---------------------------HDSR--IACFALTQDGQLLATSSTK----------------------------  279 (403)
Q Consensus       257 ---------------------------~~~~--i~~~~~sp~g~~l~s~~~d----------------------------  279 (403)
                                                 ..+.  -...+++|+..+++....+                            
T Consensus       355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (571)
T d2ad6a1         355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence                                       0000  0125677777776654433                            


Q ss_pred             ---------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          280 ---------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       280 ---------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                               |. |.-+|+.+++.+-+....   ....+-..+-.+.++++++.||.++.+|.++++.
T Consensus       435 ~~~~~~~~~G~-l~AiD~~TG~~~W~~~~~---~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         435 PNGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             TTSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cCCcccCCccc-EEEeccCCCceeeEcCCC---CCCCcceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence                     34 666777888777655532   1111111122466777899999999999999994

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.05  E-value=8.2e-05  Score=61.19  Aligned_cols=97  Identities=13%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             EEeeC--CCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC-CC-----cEEEEEEcCCCc
Q 015650          221 AVSQG--VGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KG-----TLVRIFNTLDGT  292 (403)
Q Consensus       221 ~~~~~--~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg-----~~i~iwd~~~~~  292 (403)
                      .++|+  |+.++++.    ++.|.+.|+.++..+.+..+.+.+...+|||||+.||.... ++     . |.+++..+++
T Consensus         5 ~~sPdi~G~~v~f~~----~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~-i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC----CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTAD-LYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE----TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEE-EEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe----CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceE-EEEEEecCCc
Confidence            46788  88766653    46788999999999888888888999999999999986543 21     3 7778887776


Q ss_pred             EEEEEecC----CCcccEEEEEeCCCCCEEEEEe
Q 015650          293 LLQEVRRG----ADRAEIYSLAFSSNAQWLAVSS  322 (403)
Q Consensus       293 ~~~~~~~~----~~~~~v~~l~~s~d~~~l~s~~  322 (403)
                      ..+.....    ........+.|+|||+.|+...
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            65432211    0112456789999999988764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.02  E-value=0.0025  Score=58.05  Aligned_cols=230  Identities=7%  Similarity=0.002  Sum_probs=126.7

Q ss_pred             CCcEEEEEcCCCeeEEEEecccCcceeE--EEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecC-------
Q 015650          105 DHGFRIYNCDPFREIFRRDFERGGGIGV--VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-------  175 (403)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~-------  175 (403)
                      ++.+.-.|.++++.+....+..+....+  ...-.-.++..++..........|.|+-+|.++|+.+-.+...       
T Consensus       137 ~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~  216 (573)
T d1kb0a2         137 DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKP  216 (573)
T ss_dssp             TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred             ccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCC
Confidence            4446666777777665544421111111  1100111334444322211223378999999999998876410       


Q ss_pred             -------------------------Cce-eEEEEecCceEEE--e--------------------cCeEEEEEcCCceee
Q 015650          176 -------------------------SEV-RSVKLRRDRIIVV--L--------------------EQKIFVYNFADLKLL  207 (403)
Q Consensus       176 -------------------------~~i-~~~~~~~~~~~~~--~--------------------d~~i~i~d~~~~~~~  207 (403)
                                               ..+ ...++.++..++.  .                    ...|...|+++++..
T Consensus       217 ~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~  296 (573)
T d1kb0a2         217 FEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK  296 (573)
T ss_dssp             CSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred             CCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchhee
Confidence                                     011 1244555443333  1                    125778888888887


Q ss_pred             eEeeccCCC---------ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC--------------------
Q 015650          208 HQIETIANP---------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD--------------------  258 (403)
Q Consensus       208 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~--------------------  258 (403)
                      ..++...+.         ........++....++..+..+|.+.++|..+++........                    
T Consensus       297 W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (573)
T d1kb0a2         297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAA  376 (573)
T ss_dssp             EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGG
T ss_pred             ecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeec
Confidence            766543222         222334445544444444668899999998886643211100                    


Q ss_pred             ----------------CceEEEEEcCCCCEEEEEeCC-------------------------------------------
Q 015650          259 ----------------SRIACFALTQDGQLLATSSTK-------------------------------------------  279 (403)
Q Consensus       259 ----------------~~i~~~~~sp~g~~l~s~~~d-------------------------------------------  279 (403)
                                      ..-..++++|+..+++....+                                           
T Consensus       377 ~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~  456 (573)
T d1kb0a2         377 RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPF  456 (573)
T ss_dssp             GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCE
T ss_pred             cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCc
Confidence                            001134677777666653322                                           


Q ss_pred             CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (403)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~  338 (403)
                      |. |.-||+.+++.+-..+..   .+...=..+-.|.+|++|+.||.++.||.++++.+
T Consensus       457 G~-l~AiD~~tGk~~W~~~~~---~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GR-LLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cc-EEEeCCCCCceEeeecCC---CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            23 666788888877666532   12111112236778888999999999999999964

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.0035  Score=50.88  Aligned_cols=227  Identities=9%  Similarity=-0.060  Sum_probs=134.6

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCCCCceEEEEECCCCc---eeEE-Ee
Q 015650           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSR---CIGE-LS  173 (403)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~i~iwd~~~~~---~~~~-~~  173 (403)
                      +|+.+..+.|+-.++++.+....  +.  ....+.++.|+... ....+-...     +.|.-.++....   .... +.
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~--~~--~~~~~~~id~d~~~~~lYw~D~~~-----~~I~~~~l~~~~~~~~~~~~~~   73 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSL--IP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS   73 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEE--EC--SCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEEC
T ss_pred             EEEEECCCeEEEEECCCCcceee--eC--CCCceEEEEEEeCCCEEEEEECCC-----CEEEEEEecCCCCCcceEEEEe
Confidence            56666666688889876554322  22  34456778887533 233333333     667766654322   1112 22


Q ss_pred             -cCCceeEEEEecCce--EEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC
Q 015650          174 -FRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (403)
Q Consensus       174 -~~~~i~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~  248 (403)
                       ....+.++++...+.  +.+  ..++|.+.++........+.........+++.|....++++-.+ ..+.|...++..
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dG  152 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG  152 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred             CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCC
Confidence             234567788876443  333  35689999987655444444444556778888877777666434 456788888887


Q ss_pred             CceeEEee-cCCceEEEEEcCCCCEEEEE-eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCc
Q 015650          249 KRTKFIMA-HDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT  326 (403)
Q Consensus       249 ~~~~~~~~-~~~~i~~~~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~  326 (403)
                      .....+.. .-.....+++++.++.|+.+ ...+. |...|+........+..........+|++. .+.+..+-..++.
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~-I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~  230 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCCcCE-EEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe
Confidence            66665543 34567899999988877666 44566 898898654443333332222345677775 2333444446777


Q ss_pred             EEEEEeecCCC
Q 015650          327 VHVFNLKVNSG  337 (403)
Q Consensus       327 v~iwd~~~~~~  337 (403)
                      |+..+..+++.
T Consensus       231 I~~~~~~~g~~  241 (266)
T d1ijqa1         231 IFSANRLTGSD  241 (266)
T ss_dssp             EEEEETTTCCC
T ss_pred             EEEEECCCCcc
Confidence            77777666653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=0.0035  Score=50.69  Aligned_cols=216  Identities=6%  Similarity=-0.068  Sum_probs=128.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-C-CcEEEEEcCCCeeEEEEecccCcceeEEEEeee--CCeEEEeeCCCCCCCCCceE
Q 015650           83 SPPPTLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKV  158 (403)
Q Consensus        83 ~~~~~i~~i~~s~d~~~l~~~~-~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~~~~~~i  158 (403)
                      .+...+.+|+|....+.|.... . +.|+..+++.......  +. ........+++.  .+.++++-.. .     +.|
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v--~~-~~~~~p~~iAvD~~~~~lY~~d~~-~-----~~I  103 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--IR-QDLGSPEGIALDHLGRTIFWTDSQ-L-----DRI  103 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--EC-TTCCCEEEEEEETTTTEEEEEETT-T-----TEE
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE--EE-eccccccEEEEeccCCeEEEeccC-C-----CEE
Confidence            3444578899998887777665 3 3388878775544322  22 122345555554  4555555443 3     789


Q ss_pred             EEEECCCCceeEEEe-cCCceeEEEEecCceEEE-ec---C--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LE---Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (403)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d---~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (403)
                      .+.++........+. ....+..+++.|...++. ++   +  .|...++..................+++.+..+.+|+
T Consensus       104 ~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         104 EVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             EEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEE
Confidence            999987554433333 346788999998665555 32   2  3555566443322222222233457888888888777


Q ss_pred             EeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEE-eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (403)
Q Consensus       232 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (403)
                      +-  ...+.|...++.......+........+|++.  +.+|+.. ...+. |...|..+++.+..+... ......+|+
T Consensus       184 ~d--~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~-I~~~~~~~g~~~~~~~~~-~~~~~~gi~  257 (263)
T d1npea_         184 VD--AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPH-KQTRLYGIT  257 (263)
T ss_dssp             EE--TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCS-SCCCCCCEE
T ss_pred             Ee--CCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCE-EEEEECCCCccceEECCC-CCCCcceEE
Confidence            64  34678999999886655443333334678775  4455544 45566 999999889887766532 223344555


Q ss_pred             eCC
Q 015650          311 FSS  313 (403)
Q Consensus       311 ~s~  313 (403)
                      ..+
T Consensus       258 v~~  260 (263)
T d1npea_         258 IAL  260 (263)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.83  E-value=0.0062  Score=55.59  Aligned_cols=52  Identities=10%  Similarity=0.184  Sum_probs=35.7

Q ss_pred             EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |.-||+.+++.+-....   ..++.+-.++-.|.+++.|+.||.++.+|.++++.
T Consensus       455 l~A~D~~TG~~~W~~~~---~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         455 IKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             EEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEeCCCCceecccCC---CCCCccceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence            67778888877655542   12222222233577888899999999999999994

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.80  E-value=0.0083  Score=52.38  Aligned_cols=246  Identities=11%  Similarity=0.077  Sum_probs=132.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CC----c-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCC-------
Q 015650           84 PPPTLLHISFNQDHGCFAAGT-DH----G-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-------  150 (403)
Q Consensus        84 ~~~~i~~i~~s~d~~~l~~~~-~~----~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-------  150 (403)
                      +.-.+....++||++++|.+- .+    . ++++|+.+++.+. ..+.   ......+.|.+++..++-...+       
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-~~i~---~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-DVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-EEEE---EECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-cccc---cccccceEEcCCCCEEEEEEeccccCccc
Confidence            333455678899999998764 22    2 9999999887543 2232   1112346677665443321110       


Q ss_pred             ----CCCCCceEEEEECCCCce--eEEEe-c--CCceeEEEEecCceEEE---e---cC--eEEEEEcCCcee-------
Q 015650          151 ----PQYPLNKVMIWDDHQSRC--IGELS-F--RSEVRSVKLRRDRIIVV---L---EQ--KIFVYNFADLKL-------  206 (403)
Q Consensus       151 ----~~~~~~~i~iwd~~~~~~--~~~~~-~--~~~i~~~~~~~~~~~~~---~---d~--~i~i~d~~~~~~-------  206 (403)
                          .......|..+.+.+...  +..+. .  ...+..+..+.++++++   .   +.  .+.+.|+.....       
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  278 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccc
Confidence                001124788888877643  23333 2  23456777889998876   1   22  355556543211       


Q ss_pred             -eeEeeccCCCceeEEEeeCCCeEEEEee-CCccCeEEEEEccCCc---eeEEe-ecCCceEEEEEcCCCCEEEEEe-CC
Q 015650          207 -LHQIETIANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKR---TKFIM-AHDSRIACFALTQDGQLLATSS-TK  279 (403)
Q Consensus       207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~v~d~~~~~---~~~~~-~~~~~i~~~~~sp~g~~l~s~~-~d  279 (403)
                       ...+......  .-.+...++.+++.+. +..++.|...++....   ...+. .+...+..-.+...+.+|+... .+
T Consensus       279 ~~~~~~~~~~~--~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~  356 (430)
T d1qfma1         279 WVKLIDNFEGE--YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (430)
T ss_dssp             CEEEECSSSSC--EEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             eeEeecccccc--eEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcC
Confidence             1112111111  1123334555555541 2235677777776532   23333 3455454444444556666554 44


Q ss_pred             Cc-EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE--e--CCCcEEEEEeecCCC
Q 015650          280 GT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS--S--DKGTVHVFNLKVNSG  337 (403)
Q Consensus       280 g~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~--~--~dg~v~iwd~~~~~~  337 (403)
                      +. .|+++++.+++....+..  ..+.|..+...++...+...  +  .-.+++-+|+.+++.
T Consensus       357 ~~~~l~v~~~~~~~~~~~~~~--~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         357 VKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             TEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CEeEEEEEECCCCcEEEecCC--CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            32 288999988877655443  23566666666666544332  2  346788899888874

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.52  E-value=0.014  Score=49.90  Aligned_cols=115  Identities=11%  Similarity=-0.035  Sum_probs=69.2

Q ss_pred             CeEEEEEcCCCCEEEEEcC------C------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650           87 TLLHISFNQDHGCFAAGTD------H------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~------~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (403)
                      .+.......+|++++.|+-      +      .+.+||..+++-.........+........+.+++.+++.++.+    
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~----   96 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----   96 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC----
Confidence            3445555678898888761      1      15789987765332122221232233345566787777776543    


Q ss_pred             CceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEec---------CeEEEEEcCCce
Q 015650          155 LNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLK  205 (403)
Q Consensus       155 ~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~d---------~~i~i~d~~~~~  205 (403)
                      ...+.+||..+..-...-.  ....-..++..+|+++++..         +.+.+||..+.+
T Consensus        97 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          97 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            2689999988775433222  22334567777888877731         368999988754

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.33  E-value=0.04  Score=49.96  Aligned_cols=54  Identities=13%  Similarity=0.342  Sum_probs=38.9

Q ss_pred             CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      |. |.-+|+.+|+.+-....+   .++.+-..+..|.++++|+.||.++.+|.++++.
T Consensus       466 G~-l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         466 GS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             EE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             Ce-EEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence            45 777888888887776642   2222222334677888899999999999999994

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.033  Score=44.81  Aligned_cols=176  Identities=9%  Similarity=-0.025  Sum_probs=112.4

Q ss_pred             ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e---cCeEEEEEcCCce----eeeEeeccCCCceeEEEeeCCC
Q 015650          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLK----LLHQIETIANPKGLCAVSQGVG  227 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~---d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~  227 (403)
                      ..|+..++.+.+....+.....+.++.|.+....+. .   .+.|+..++....    ....+.........+++.+.++
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            568888987766555455556778899988655554 3   4567777664321    1122222234456789999899


Q ss_pred             eEEEEeeCCccCeEEEEEccCCceeE-EeecCCceEEEEEcCCCCEEEEEe--CCCcEEEEEEcCCCcEEEEEecCCCcc
Q 015650          228 SLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRA  304 (403)
Q Consensus       228 ~~~~~~~g~~d~~i~v~d~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (403)
                      .+|++-  ...+.|.+.++....... +.........++++|...+|+...  ..+. |.-.++. |.....+... .-.
T Consensus        90 ~lY~~d--~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~-I~r~~~d-Gs~~~~l~~~-~~~  164 (266)
T d1ijqa1          90 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NIQ  164 (266)
T ss_dssp             EEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SCS
T ss_pred             eEEEEe--cCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcc-eeEeccC-CCceeccccc-ccc
Confidence            888875  356789999999866544 344456688999999666665443  2344 6666664 3333344321 235


Q ss_pred             cEEEEEeCCCCCEEEEE-eCCCcEEEEEeecCC
Q 015650          305 EIYSLAFSSNAQWLAVS-SDKGTVHVFNLKVNS  336 (403)
Q Consensus       305 ~v~~l~~s~d~~~l~s~-~~dg~v~iwd~~~~~  336 (403)
                      ...+|++.+.++.|.-+ ...+.|...+++...
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            67899999888877665 456788888875543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.19  E-value=0.052  Score=46.04  Aligned_cols=230  Identities=8%  Similarity=0.013  Sum_probs=110.4

Q ss_pred             EEEEEcCCCCEEEEEcCC--cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCC-CCCCCceEEEEECCC
Q 015650           89 LHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-PQYPLNKVMIWDDHQ  165 (403)
Q Consensus        89 ~~i~~s~d~~~l~~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-~~~~~~~i~iwd~~~  165 (403)
                      ...++.++|++++.|..+  .+.+||..+..-.....+.  ........+...++.+++.++.. .......+.+||..+
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~--~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ--VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS--SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCccccccccc--ccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            456788999999998733  4999998876654333332  11122234444565555555532 112225689999887


Q ss_pred             CceeEEEe----------cC-----CceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe--ec----cCCC--cee
Q 015650          166 SRCIGELS----------FR-----SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI--ET----IANP--KGL  219 (403)
Q Consensus       166 ~~~~~~~~----------~~-----~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~--~~----~~~~--~~~  219 (403)
                      .+-...-.          +.     ..-..+..-+++.++.   ..+.+.+++..+.......  ..    ....  -..
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  236 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence            65322110          00     0011122234555555   2345666666554322211  10    0111  112


Q ss_pred             EEEeeCCCeEEEEeeCCcc-------CeEEEEEccCCc--eeEEe-----ecCCceEEEEEcCCCCEEEEEeCCC-----
Q 015650          220 CAVSQGVGSLVLVCPGLQK-------GQVRVEHYASKR--TKFIM-----AHDSRIACFALTQDGQLLATSSTKG-----  280 (403)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d-------~~i~v~d~~~~~--~~~~~-----~~~~~i~~~~~sp~g~~l~s~~~dg-----  280 (403)
                      +.+...... +++..|..+       ....+.++....  .....     .+...-.+....+||++++.|+.+.     
T Consensus       237 ~~~~~~~g~-v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~  315 (387)
T d1k3ia3         237 VMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  315 (387)
T ss_dssp             EEEETTTTE-EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             EEeeccCCc-eEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCC
Confidence            223223333 344434222       123333333211  11111     1122233556668999999988531     


Q ss_pred             ------cEEEEEEcCCCcEEEEEecCCCcccE-EEEEeCCCCCEEEEEeC
Q 015650          281 ------TLVRIFNTLDGTLLQEVRRGADRAEI-YSLAFSSNAQWLAVSSD  323 (403)
Q Consensus       281 ------~~i~iwd~~~~~~~~~~~~~~~~~~v-~~l~~s~d~~~l~s~~~  323 (403)
                            . +.+||..+.+-.. +........- ....+.+||+.|+.|+.
T Consensus       316 ~~~~~~~-ve~Ydp~~~~W~~-~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         316 DSTPVFT-PEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCSBCCC-CEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcEece-EEEEECCCCeEEE-CCCCCCcccceEEEEECCCCEEEEEeCC
Confidence                  4 7889987765322 2211111111 12345789999999873

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.15  E-value=0.04  Score=46.05  Aligned_cols=81  Identities=7%  Similarity=0.073  Sum_probs=49.5

Q ss_pred             eEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC-CCE
Q 015650          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQW  317 (403)
Q Consensus       240 ~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d-~~~  317 (403)
                      ...+|..+.+........-...+.|+++||+++|+.+.. .+. |++|++.....+.......-....-.+.+.++ |.+
T Consensus       187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~-i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             CEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             ceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCe-EEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence            445566666665555444566789999999998876655 455 99999875432222211112355677888764 444


Q ss_pred             EEEE
Q 015650          318 LAVS  321 (403)
Q Consensus       318 l~s~  321 (403)
                      ++.+
T Consensus       266 wva~  269 (340)
T d1v04a_         266 WVGC  269 (340)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.76  E-value=0.07  Score=48.28  Aligned_cols=82  Identities=17%  Similarity=0.279  Sum_probs=54.1

Q ss_pred             cCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-
Q 015650          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-  316 (403)
Q Consensus       238 d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-  316 (403)
                      .|.|.-+|+.++++.--.....++..-.++..|.++++|+.||. ++-+|.++|+.+-+++...- ..-.-+.|..+|+ 
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~-l~A~Da~TGe~LW~~~~~~~-~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGY-FKAFDAKSGKELWKFQTGSG-IVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCe-EEEEECCCCcEeEEEECCCC-ccccCEEEEECCEE
Confidence            46788888888776544433333332233457778888999999 99999999999988875321 1111256667886 


Q ss_pred             EEEEE
Q 015650          317 WLAVS  321 (403)
Q Consensus       317 ~l~s~  321 (403)
                      ||++.
T Consensus       543 Yv~i~  547 (582)
T d1flga_         543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.71  E-value=0.1  Score=47.07  Aligned_cols=94  Identities=18%  Similarity=0.279  Sum_probs=57.7

Q ss_pred             CeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC--CcccEEEEEeCCCCC
Q 015650          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSNAQ  316 (403)
Q Consensus       239 ~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~s~d~~  316 (403)
                      |.|.-||+.++++.-...+..+...=.++-.|.++++|+.|+. ++.+|.++|+.+-++....  ...+   +.|..||+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~-l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCe-EEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence            3566677777665443333322222123336778888999999 9999999999998887532  1122   44556887


Q ss_pred             -EEEEEeC----------------CCcEEEEEeecCC
Q 015650          317 -WLAVSSD----------------KGTVHVFNLKVNS  336 (403)
Q Consensus       317 -~l~s~~~----------------dg~v~iwd~~~~~  336 (403)
                       ||++.+.                .+.|.+|.|+-..
T Consensus       533 QYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~  569 (573)
T d1kb0a2         533 QYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKA  569 (573)
T ss_dssp             EEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBC
T ss_pred             EEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcC
Confidence             4443332                2357777776544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.61  E-value=0.23  Score=44.62  Aligned_cols=141  Identities=11%  Similarity=0.152  Sum_probs=81.9

Q ss_pred             ceEEEEECCCCceeEEEec-C----CceeEEEEecCceEEE-e-------cCeEEEEEcCCceeeeEeeccCC-------
Q 015650          156 NKVMIWDDHQSRCIGELSF-R----SEVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIAN-------  215 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~-~----~~i~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~-------  215 (403)
                      +.+.-.|.++|+.+..... .    ..++.--.-.++.+++ .       +|.|+.+|+++|+.+..+.....       
T Consensus       125 g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~  204 (571)
T d2ad6a1         125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLA  204 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             CcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccc
Confidence            8888889999998877651 1    1222111122344444 2       67899999999999887643210       


Q ss_pred             ------------------------------Cc-eeEEEeeCCCeEEEEeeCC-------------ccCeEEEEEccCCce
Q 015650          216 ------------------------------PK-GLCAVSQGVGSLVLVCPGL-------------QKGQVRVEHYASKRT  251 (403)
Q Consensus       216 ------------------------------~~-~~~~~~~~~~~~~~~~~g~-------------~d~~i~v~d~~~~~~  251 (403)
                                                    .+ ...++.+..+.+++.+...             ....+...|.+++++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~  284 (571)
T d2ad6a1         205 KDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA  284 (571)
T ss_dssp             TTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred             ccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhh
Confidence                                          01 2246666665555444210             024567778888765


Q ss_pred             eEEee---cCC-------ceEEEEEcCCCC---EEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650          252 KFIMA---HDS-------RIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEV  297 (403)
Q Consensus       252 ~~~~~---~~~-------~i~~~~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (403)
                      .-...   |..       ......+..+|+   .++.++.+|. +.++|..+|+.+...
T Consensus       285 ~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~-l~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         285 KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAE  342 (571)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             eecccccCccccccccccccceeeeeccCccccceeeccccce-EEEEecCCCcEeeee
Confidence            43221   111       111122222443   4567888999 999999999987543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.59  E-value=0.15  Score=42.34  Aligned_cols=187  Identities=11%  Similarity=0.161  Sum_probs=105.9

Q ss_pred             CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEec------CceEE-E-ec-----CeEEEEEcCC-ce
Q 015650          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR------DRIIV-V-LE-----QKIFVYNFAD-LK  205 (403)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~------~~~~~-~-~d-----~~i~i~d~~~-~~  205 (403)
                      ...++++....     +-|++||+ +|+.+..+. .+.+..|..-.      ...-+ + ++     .+|.+|.+.. ..
T Consensus        39 ~~SlI~gTdK~-----~Gl~vYdL-~G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          39 QNSKLITTNKK-----SGLAVYSL-EGKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGCEEEEEETT-----SCCEEEET-TCCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             CccEEEEEcCc-----CCEEEEcC-CCcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            33444444544     56999997 477776664 35566655442      22222 2 32     2577787642 22


Q ss_pred             eeeEeecc-------CCCceeEEE--eeCCCeEEEEeeCCccCeEEEEEccC---Ccee----EEeecCCceEEEEEcCC
Q 015650          206 LLHQIETI-------ANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYAS---KRTK----FIMAHDSRIACFALTQD  269 (403)
Q Consensus       206 ~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~g~~d~~i~v~d~~~---~~~~----~~~~~~~~i~~~~~sp~  269 (403)
                      .+..+...       ...++.+|+  ++....+++... ..+|.+..|.+..   +.+.    ....-...+..|.++..
T Consensus       112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~-~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde  190 (353)
T d1h6la_         112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVT-GKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDE  190 (353)
T ss_dssp             EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEE-CSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETT
T ss_pred             ccccccccccccccccCcceEEEEEecCCCCeEEEEEE-cCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCC
Confidence            23333211       123556676  444444444443 4788998887643   2221    11234567889999999


Q ss_pred             CCEEEEEeCCCcEEEEEEcCC-----CcEEEEEecCCCcccEEEEEeC--CCCC-EEEE-EeCCCcEEEEEeecC
Q 015650          270 GQLLATSSTKGTLVRIFNTLD-----GTLLQEVRRGADRAEIYSLAFS--SNAQ-WLAV-SSDKGTVHVFNLKVN  335 (403)
Q Consensus       270 g~~l~s~~~dg~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~l~~s--~d~~-~l~s-~~~dg~v~iwd~~~~  335 (403)
                      ...|+.+-++.. |+.+++.-     +..+....+......+-.|+.-  .++. +|++ .-.+++..|||....
T Consensus       191 ~~~LyisEE~~G-iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         191 YGSLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TTEEEEEETTTE-EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CCcEEEecCccc-eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            899999888777 77776541     2233222222234566677643  3333 5544 447889999998774

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.36  E-value=0.21  Score=41.41  Aligned_cols=118  Identities=9%  Similarity=0.060  Sum_probs=69.1

Q ss_pred             ceEEEEECCCCce-e---EEEec--CCceeEEEEecCceEEEec------------------CeEEEEEcCCceeeeEee
Q 015650          156 NKVMIWDDHQSRC-I---GELSF--RSEVRSVKLRRDRIIVVLE------------------QKIFVYNFADLKLLHQIE  211 (403)
Q Consensus       156 ~~i~iwd~~~~~~-~---~~~~~--~~~i~~~~~~~~~~~~~~d------------------~~i~i~d~~~~~~~~~~~  211 (403)
                      .+|.+|++..... +   ..+.+  ....+++.+..++.+++++                  +...+|....++......
T Consensus       124 ~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~  203 (340)
T d1v04a_         124 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE  203 (340)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE
T ss_pred             ceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC
Confidence            5788887754322 2   22222  3456889988888887741                  233444443433322222


Q ss_pred             ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeE--EeecCCceEEEEEcC-CCCEEEEE
Q 015650          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF--IMAHDSRIACFALTQ-DGQLLATS  276 (403)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~--~~~~~~~i~~~~~sp-~g~~l~s~  276 (403)
                       ....-.-++++++++.++++.  ...+.|++|++.... ...  ...-....-.+.+.+ +|.+.+.+
T Consensus       204 -~l~~pNGI~~s~d~~~lyVa~--t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         204 -GFDFANGINISPDGKYVYIAE--LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             -EESSEEEEEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             -CCCccceeEECCCCCEEEEEe--CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence             234457799999999887776  456889999987633 222  122345567788876 45544443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.32  E-value=0.34  Score=43.32  Aligned_cols=195  Identities=12%  Similarity=0.113  Sum_probs=106.6

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCc--------ceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG--------GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (403)
Q Consensus        96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~  167 (403)
                      +|.++++..++.|.-.|.++++.+.........        ...-.......+..++.+  .+     +.|.-.|..+|+
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~-----g~l~Alda~tG~  138 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT--LD-----GRLIALDAKTGK  138 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC--TT-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEe--CC-----CEEEEEECCCCc
Confidence            455555555555666777777776553221000        000011222233333333  33     889999999999


Q ss_pred             eeEEEecCCc-----eeEEEEecCceEEE--------ecCeEEEEEcCCceeeeEeeccCC-------------------
Q 015650          168 CIGELSFRSE-----VRSVKLRRDRIIVV--------LEQKIFVYNFADLKLLHQIETIAN-------------------  215 (403)
Q Consensus       168 ~~~~~~~~~~-----i~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~-------------------  215 (403)
                      .+........     +...-.-.++.+++        ..|.|+-+|.++|+.+..+.....                   
T Consensus       139 ~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~  218 (560)
T d1kv9a2         139 AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ  218 (560)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred             EEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccc
Confidence            9887762211     11111112455555        146899999999999888753211                   


Q ss_pred             -----------C-ceeEEEeeCCCeEEEEeeCC----------------ccCeEEEEEccCCceeEEe---ecCC-----
Q 015650          216 -----------P-KGLCAVSQGVGSLVLVCPGL----------------QKGQVRVEHYASKRTKFIM---AHDS-----  259 (403)
Q Consensus       216 -----------~-~~~~~~~~~~~~~~~~~~g~----------------~d~~i~v~d~~~~~~~~~~---~~~~-----  259 (403)
                                 . -..+++.+..+.+++.+...                ....|.-.|.+++++.-..   .|..     
T Consensus       219 ~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~  298 (560)
T d1kv9a2         219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA  298 (560)
T ss_dssp             SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             ccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccc
Confidence                       1 12256666666555543210                0235666677777765432   1221     


Q ss_pred             --ceEEEEEcCCC---CEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          260 --RIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       260 --~i~~~~~sp~g---~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                        ...-+.+..+|   ..++.+..+|. +.++|..+++++...+
T Consensus       299 ~~~~~l~~~~~~g~~~~~v~~~~k~G~-~~~lDr~tG~~i~~~~  341 (560)
T d1kv9a2         299 TQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK  341 (560)
T ss_dssp             CSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             cceeeeeeeecCCceeeeeeecCccce-EEEEecCCCccccccc
Confidence              11112222244   35677888998 9999999999886654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.54  E-value=0.61  Score=39.94  Aligned_cols=204  Identities=10%  Similarity=0.064  Sum_probs=103.3

Q ss_pred             CcceeEEEEeeeCCeEEEee----CCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e--c------
Q 015650          127 GGGIGVVEMLFRCNILALVG----GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--E------  193 (403)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s----~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--d------  193 (403)
                      ++...+..+.++|++..++-    +|.+    ...|+++|+.+++.+...-.......+.|.+|+..++ .  +      
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e----~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSD----WVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCS----CEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             cccceecceEecCCCCEEEEEeccccCc----hheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcc
Confidence            34445556677888766552    2222    2689999999998765332222235789999988765 1  1      


Q ss_pred             ----------CeEEEEEcCCcee--eeEeeccCCC--ceeEEEeeCCCeEEEEeeCCccCeEEE--EEccCCc-------
Q 015650          194 ----------QKIFVYNFADLKL--LHQIETIANP--KGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKR-------  250 (403)
Q Consensus       194 ----------~~i~i~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d~~i~v--~d~~~~~-------  250 (403)
                                ..|+.+.+.+...  ...+......  ...+..+.+++.+++...........+  .|+....       
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~  277 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence                      1588888876432  2333333332  334556777776665543333444444  4544311       


Q ss_pred             --eeEEeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEE-e
Q 015650          251 --TKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVS-S  322 (403)
Q Consensus       251 --~~~~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~-~  322 (403)
                        ...+........-+. +.++.+++....   ++. |...++.+...  ...+-.. +...+..-.+...+.+|+.. -
T Consensus       278 ~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~-L~~~~~~~~~~~~w~~vi~~-~~~~~~~~~~~~~~~~lvl~~~  354 (430)
T d1qfma1         278 KWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYR-LINIDFTDPEESKWKVLVPE-HEKDVLEWVACVRSNFLVLCYL  354 (430)
T ss_dssp             CCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCE-EEEEETTBCCGGGCEEEECC-CSSCEEEEEEEETTTEEEEEEE
T ss_pred             ceeEeecccccceEEEe-cCCceeecccCcccccce-eEEecCCCCccccceEEecc-cCcceeeeEEEEECCEEEEEEE
Confidence              112222222233222 223333333322   345 66666654321  1233221 33334433343444566544 3


Q ss_pred             CCC--cEEEEEeecCCC
Q 015650          323 DKG--TVHVFNLKVNSG  337 (403)
Q Consensus       323 ~dg--~v~iwd~~~~~~  337 (403)
                      .++  .|+++++.+++.
T Consensus       355 ~~~~~~l~v~~~~~~~~  371 (430)
T d1qfma1         355 HDVKNTLQLHDLATGAL  371 (430)
T ss_dssp             ETTEEEEEEEETTTCCE
T ss_pred             cCCEeEEEEEECCCCcE
Confidence            554  477888876653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.08  E-value=0.64  Score=38.44  Aligned_cols=142  Identities=11%  Similarity=0.186  Sum_probs=81.9

Q ss_pred             cCceEEE-ecC--eEEEEEcCCceeeeEeeccCCCceeEEEee----CCCeEEE-EeeCCcc--CeEEEEEccC--Ccee
Q 015650          185 RDRIIVV-LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQ----GVGSLVL-VCPGLQK--GQVRVEHYAS--KRTK  252 (403)
Q Consensus       185 ~~~~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~g~~d--~~i~v~d~~~--~~~~  252 (403)
                      |+..+++ +|+  -|++||+. |+.++.+.  .+.+..+.+-.    .++...+ +.+...+  ..|.+|.+..  ..+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            3445555 543  49999984 77777664  24444444332    3333323 3222222  3677887754  2232


Q ss_pred             EEeec-------CCceEEEEE--cCC-CC-EEEEEeCCCcEEEEEEcC---CC----cEEEEEecCCCcccEEEEEeCCC
Q 015650          253 FIMAH-------DSRIACFAL--TQD-GQ-LLATSSTKGTLVRIFNTL---DG----TLLQEVRRGADRAEIYSLAFSSN  314 (403)
Q Consensus       253 ~~~~~-------~~~i~~~~~--sp~-g~-~l~s~~~dg~~i~iwd~~---~~----~~~~~~~~~~~~~~v~~l~~s~d  314 (403)
                      .+...       ...++.+|+  ++. |. +++....+|. +..|.+.   .+    +.++.+.   ....+..+.+...
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~-v~q~~l~~~~~g~v~~~lvr~f~---~~~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGE-FEQYELNADKNGYISGKKVRAFK---MNSQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSSEEEEEEEEEE---CSSCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCce-EEEEEEEcCCCCceeeEeeeccC---CCCccceEEEeCC
Confidence            22211       123566666  664 54 4455666777 8888663   33    4555666   3467899999999


Q ss_pred             CCEEEEEeCCCcEEEEEee
Q 015650          315 AQWLAVSSDKGTVHVFNLK  333 (403)
Q Consensus       315 ~~~l~s~~~dg~v~iwd~~  333 (403)
                      .+.|..+-++.-|+.++.+
T Consensus       191 ~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             TTEEEEEETTTEEEEEESS
T ss_pred             CCcEEEecCccceEEEEec
Confidence            9999998777655444443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.95  E-value=3  Score=37.24  Aligned_cols=142  Identities=13%  Similarity=0.163  Sum_probs=85.2

Q ss_pred             ceEEEEECCCCceeEEEecC-----CceeEEEEecCceEEE-e-------cCeEEEEEcCCceeeeEeeccC--------
Q 015650          156 NKVMIWDDHQSRCIGELSFR-----SEVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIA--------  214 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~--------  214 (403)
                      +.|.-.|.++|+.+..+...     ..++.--.--++.+++ .       .|.|+-+|+++|+++..+....        
T Consensus       131 g~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~  210 (596)
T d1w6sa_         131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLA  210 (596)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             CCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccc
Confidence            88999999999998887521     1122111112445555 1       4889999999999998764321        


Q ss_pred             -----------------------------C-CceeEEEeeCCCeEEEEeeCCc-------------cCeEEEEEccCCce
Q 015650          215 -----------------------------N-PKGLCAVSQGVGSLVLVCPGLQ-------------KGQVRVEHYASKRT  251 (403)
Q Consensus       215 -----------------------------~-~~~~~~~~~~~~~~~~~~~g~~-------------d~~i~v~d~~~~~~  251 (403)
                                                   . .-..+++.+..+.+++.+....             ...|...|.+++++
T Consensus       211 ~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~  290 (596)
T d1w6sa_         211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA  290 (596)
T ss_dssp             TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE
T ss_pred             cccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccc
Confidence                                         0 0123456666665555542111             34577788888776


Q ss_pred             eEEe---ecCC-------ceEEEE-EcCCC---CEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650          252 KFIM---AHDS-------RIACFA-LTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (403)
Q Consensus       252 ~~~~---~~~~-------~i~~~~-~sp~g---~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (403)
                      .-..   .|..       ...-+. ...+|   +.++....+|. +.++|..+|+++...+
T Consensus       291 ~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~-~~vlDr~tG~~i~~~~  350 (596)
T d1w6sa_         291 KFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK  350 (596)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             cccccceeccccCCccccceeeeeccccccccccceeccccccc-eeeecCCCCceeeecc
Confidence            4422   2221       111122 12344   36777888998 9999999999886543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.62  E-value=3.1  Score=34.53  Aligned_cols=136  Identities=13%  Similarity=0.148  Sum_probs=75.8

Q ss_pred             CceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe
Q 015650          176 SEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM  255 (403)
Q Consensus       176 ~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~  255 (403)
                      ..|..++|+.|...+..++.+..++...............++  ..+.+.+....++.   .++.+.++++.......+.
T Consensus        87 p~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~--~~~~~~p~~~~l~~---~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          87 PDVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPV--FQLKNVNNTLVILN---SVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TTEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECSSCE--EEEEECSSEEEEEE---TTSEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEeeCCEEEEEeCCCEEEEEeeccccccccccccccc--cceecCCceeEEEe---cCCCEEEEEeccCcccccc
Confidence            368889998876555578889999877644333333333333  44444455544443   5688889998876543322


Q ss_pred             ------ecCCceEEEEEcCCCCEEEEEeCCCcEEEEE-EcCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEE
Q 015650          256 ------AHDSRIACFALTQDGQLLATSSTKGTLVRIF-NTLDGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVS  321 (403)
Q Consensus       256 ------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw-d~~~~~~~~~~~~-~~~~~~v~~l~~s~d~~~l~s~  321 (403)
                            .-.+.+.+++|++.|+.++++..++  ..+- ++....   .+.. ......|.+|.|-.+..++++-
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~--~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE--MEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEeCCCc--eeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence                  1134566677777776666653222  2221 111100   0111 0123468899998776666654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.59  E-value=3.2  Score=34.50  Aligned_cols=108  Identities=9%  Similarity=0.141  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCC-----------CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDP-----------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (403)
Q Consensus        87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (403)
                      ..+-+++++...++++|+.+++.|..+..           ........+     ..+..++|+.+.+.+..+        
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i-----p~v~~vafs~d~l~v~~~--------  104 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI-----PDVIFVCFHGDQVLVSTR--------  104 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC-----TTEEEEEEETTEEEEEES--------
T ss_pred             ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC-----CCeEEEEeeCCEEEEEeC--------
Confidence            35568888888888888888888887521           111111122     258889999887666544        


Q ss_pred             ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCceee
Q 015650          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLL  207 (403)
Q Consensus       156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~  207 (403)
                      +.+..++...-....... ...++..+.++|....++ .++.+.++++.+++..
T Consensus       105 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~  158 (381)
T d1xipa_         105 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK  158 (381)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccc
Confidence            567888876654443333 567889999999877666 6899999999887543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.22  E-value=3.9  Score=34.90  Aligned_cols=56  Identities=14%  Similarity=0.225  Sum_probs=39.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec------CCCcccEEEEEeCCC
Q 015650          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR------GADRAEIYSLAFSSN  314 (403)
Q Consensus       258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~------~~~~~~v~~l~~s~d  314 (403)
                      -....+|+|.|||++|++--..|. |++++..+++.......      ...+.....|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~-i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGK-ILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCE-EEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            345689999999998887655788 99998877765432221      112356889999985

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=5  Score=31.23  Aligned_cols=220  Identities=12%  Similarity=0.071  Sum_probs=96.3

Q ss_pred             EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCC---CCCCceEEEEECCCCceeEEEe--cCCceeEEE
Q 015650          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QYPLNKVMIWDDHQSRCIGELS--FRSEVRSVK  182 (403)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~---~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~  182 (403)
                      +.+||+.+.+-.....+. ..... .++....+.++++.|....   .-....+.+||..+.+....-.  ....-..++
T Consensus        21 ~~~yd~~t~~W~~~~~~p-~~R~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~   98 (288)
T d1zgka1          21 LEAYNPSNGTWLRLADLQ-VPRSG-LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG   98 (288)
T ss_dssp             EEEEETTTTEEEECCCCS-SCCBS-CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred             EEEEECCCCeEEECCCCC-Cccce-eEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecc
Confidence            889999887654333343 11111 1222334555555542110   0001467788877664432211  111111222


Q ss_pred             EecCceEEEe--------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC----ccCeEEEEEccCCc
Q 015650          183 LRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKR  250 (403)
Q Consensus       183 ~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~v~d~~~~~  250 (403)
                      .. ++++++.        ...+..+|..+......- .........+.....+.+++. .|.    ....+..||.....
T Consensus        99 ~~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~-GG~~~~~~~~~~~~~d~~~~~  175 (288)
T d1zgka1          99 VI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTRRIGVGVAVLNRLLYAV-GGFDGTNRLNSAECYYPERNE  175 (288)
T ss_dssp             EE-TTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEETTEEEEE-CCBCSSCBCCCEEEEETTTTE
T ss_pred             cc-ceeeEEecceecccccceeeeeccccCcccccc-ccccccccceeeeeeecceEe-cCcccccccceEEEeeccccc
Confidence            22 3443331        224566776664432211 111111112222223344333 232    12457778877655


Q ss_pred             eeEEeecCC--ceEEEEEcCCCCEEEEEeCCC-----cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 015650          251 TKFIMAHDS--RIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (403)
Q Consensus       251 ~~~~~~~~~--~i~~~~~sp~g~~l~s~~~dg-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~  323 (403)
                      .........  ...++.. .++++++.|+.++     . +.++|..+.+....-... ....-.+++. .++++++.|+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~-~~~~~~~~~~~~~~~~~p-~~r~~~~~~~-~~~~l~v~GG~  251 (288)
T d1zgka1         176 WRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNS-VERYDVETETWTFVAPMK-HRRSALGITV-HQGRIYVLGGY  251 (288)
T ss_dssp             EEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCC-EEEEETTTTEEEECCCCS-SCCBSCEEEE-ETTEEEEECCB
T ss_pred             cccccccccccccccccc-eeeeEEEecCccccccccc-eeeeeecceeeecccCcc-CcccceEEEE-ECCEEEEEecC
Confidence            444332111  1112222 2455666665443     3 678887766543321111 1111112222 26778887765


Q ss_pred             CCc-----EEEEEeecCC
Q 015650          324 KGT-----VHVFNLKVNS  336 (403)
Q Consensus       324 dg~-----v~iwd~~~~~  336 (403)
                      ++.     |.+||+.+.+
T Consensus       252 ~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         252 DGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CSSCBCCEEEEEETTTTE
T ss_pred             CCCeecceEEEEECCCCE
Confidence            443     6677777654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=82.46  E-value=8  Score=28.95  Aligned_cols=189  Identities=8%  Similarity=0.048  Sum_probs=100.8

Q ss_pred             ecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--c--------CCceeEEEEecCc---eE
Q 015650          123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--F--------RSEVRSVKLRRDR---II  189 (403)
Q Consensus       123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~--------~~~i~~~~~~~~~---~~  189 (403)
                      .+.......|.++++......+..++.|      ...+|-++.|++.....  .        ..-|..+.+-..+   .+
T Consensus        97 ~i~spk~vRI~S~~yddk~vvF~Gased------~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF  170 (313)
T d2hu7a1          97 RLEAVKPMRILSGVDTGEAVVFTGATED------RVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLF  170 (313)
T ss_dssp             ECTTSCSBEEEEEEECSSCEEEEEECSS------CEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred             EecCCceEEEEEeeecCceEEEecccCC------ceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEE
Confidence            3442344789999999888888888875      67788777776543322  1        2233344332211   12


Q ss_pred             EE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeec--------CC
Q 015650          190 VV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH--------DS  259 (403)
Q Consensus       190 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~--------~~  259 (403)
                      ++  +.|.+++++...|..-.........+ ...+-.         .| +...| -+|++.+....+.-.        .-
T Consensus       171 ~adl~SG~lri~tpkeGS~~~ay~~~gnKV-~sdyEt---------~g-Esywi-t~D~~s~~yerve~P~kd~~sy~p~  238 (313)
T d2hu7a1         171 TSNLSSGGLRVFDSGEGSFSSASISPGMKV-TAGLET---------AR-EARLV-TVDPRDGSVEDLELPSKDFSSYRPT  238 (313)
T ss_dssp             EEETTTEEEEEECCSSEEEEEEEECTTSCE-EEEEEE---------SS-CEEEE-EECTTTCCEEECCCSSCHHHHHCCS
T ss_pred             EEecccCCEEEecCCCCcccceeEccCcee-eeccCC---------CC-ceEEE-EEecccCceeeeecCcccceeecce
Confidence            22  25566666655554332222222222 111111         11 22233 346776665544321        23


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (403)
Q Consensus       260 ~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~  337 (403)
                      .|+-+-+.|++++++.+-.||. -++|.  +|+.+....+     .+..+..--+.-++.-.+-..--+|-.+.++++
T Consensus       239 ~I~~~~Y~Pdd~L~iiakrdG~-s~lF~--nGk~in~p~G-----~~~gat~i~~~iyfshsSL~tP~kI~~~~~~~~  308 (313)
T d2hu7a1         239 AITWLGYLPDGRLAVVARREGR-SAVFI--DGERVEAPQG-----NHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGEP  308 (313)
T ss_dssp             EEEEEEECTTSCEEEEEEETTE-EEEEE--TTEEECCCSS-----EEEEEEEETTEEEEEEEETTEEEEEEEETTCCE
T ss_pred             EEEeeeeCCCCcEEEEEecCCc-hheee--cceEecCCCC-----cccceEEECCEEEEeecccCCCceeEEcCCCCc
Confidence            4666779999999899999999 89997  6777654442     222222212222233333444456666666653