Citrus Sinensis ID: 015651

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MGIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQCR
ccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHccccccEEEcccccccccccccccEEEcccccccccccEEEEccccccccccEEEccEEEEEEcHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHcccccccccccccEEEEEcccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHcccHcccccccccccccccccccccHHccccccEEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHcccHHHHcccEEEEcccccEEcccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHcccccccccccccccccHHHccccEEEEccccEEEcccEEEEEcccccccccEEEEccccEEEEEHHHHHHEEcccccHHHHHHHHHHHccccccccEEEEEcccccccccEEcccEEEEEEccccccccccccHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHcccccccccccEccccccccccccccccccEcccccHHHHHHHHHHHHHccHcccccccc
MGIKVFVTLFMLTSVFLCFVYIstpakrftslykfnpiimtsnkitlksnnssypVTFAYLLSASKGDTIKLKRALLALyhpgnhylihmdreapEKEQREIAEfvanepvfrmVNNVYivgkpnlvtyrgptmLATTLHAIAMLLRCCkwdwfinlsasdyplvtqDDLIEAFsdlprdlnfiqhSSHLGwkmnkrakpiiidpglyslnkSEIWWVIKQRsipsafklytgsawtilsrpFAEYCimgwdnlpRSLLLYYTnfvsspegyfQTVICnsedyknttanhdlhyitwdtppkqhprslglkDFRRMVLssrpfarkfkqnspvldkIDRDLLKRHRRrytnggwcseserdqacsgfqsenygvlrpgpgsrRLKNLLTKLISArnftkrqcr
MGIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEfvanepvfrmvNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHyitwdtppkqhprslgLKDFRRMVLSSrpfarkfkqnspvldkidrdllKRHRRrytnggwcseserdQACSgfqsenygvlrpgpgsrrLKNLLtklisarnftkrqcr
MGIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQCR
**IKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMD*********EIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDT*************F**MV****************LDKIDRDLLKRHRRRYTNGGWC*******************************LLTKL************
**IKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKF********************VTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLIS**NFTK*QC*
MGIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQCR
*GIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARN*****C*
iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQCR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
Q9EPI1 821 Xylosyltransferase 1 (Fra yes no 0.652 0.320 0.277 3e-22
Q5QQ56 950 Xylosyltransferase 1 OS=C yes no 0.647 0.274 0.294 5e-22
Q5QQ50 865 Xylosyltransferase 2 OS=C no no 0.702 0.327 0.299 8e-22
Q5QQ57 945 Xylosyltransferase 1 OS=P yes no 0.699 0.298 0.286 1e-21
Q86Y38 959 Xylosyltransferase 1 OS=H yes no 0.699 0.294 0.286 2e-21
Q5QQ49 867 Xylosyltransferase 2 OS=B no no 0.665 0.309 0.298 5e-21
Q9H1B5 865 Xylosyltransferase 2 OS=H no no 0.652 0.304 0.303 6e-21
Q5QQ51 865 Xylosyltransferase 2 OS=P no no 0.652 0.304 0.303 6e-21
Q9EPL0 865 Xylosyltransferase 2 OS=M no no 0.665 0.309 0.304 2e-20
Q811B1 953 Xylosyltransferase 1 OS=M yes no 0.647 0.273 0.291 4e-20
>sp|Q9EPI1|XYLT1_RAT Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1 Back     alignment and function desciption
 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 140/310 (45%), Gaps = 47/310 (15%)

Query: 55  PVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRM 114
           PV  A++L      + +L+R   A+YH  + Y IH+D+ +     R++ +F       R 
Sbjct: 190 PVRIAFVLVVHGRASRQLQRMFKAIYHKDHFYYIHVDKRS-NYLHRQVLQFS------RQ 242

Query: 115 VNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDW--FINLSASDYPLVTQDDLIE 172
            +NV +        + G ++L+T L ++  LL    W W  FINLSA+DYP+ T D L+ 
Sbjct: 243 YDNVRVTSWRMATIWGGASLLSTYLQSMRDLLEMTDWPWDFFINLSAADYPIRTNDQLV- 301

Query: 173 AFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYT 232
           AF    RD+NF++       +  ++      D     L      W +  R IP    +  
Sbjct: 302 AFLSRYRDMNFLKSHGRDNARFIRKQ-----DLDRLFLECDTHMWRLGDRRIPEGIAVDG 356

Query: 233 GSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDL 292
           GS W +L+R F EY     D+L   +  +Y+  +   E +F TV+ NS  + +T  +++L
Sbjct: 357 GSDWFLLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSP-HCDTMVDNNL 415

Query: 293 HYITWDTPPKQHPRSLGLK--------------------DFRRMVLSSRP--FARKFKQ- 329
               W+       R LG K                    DF R   ++RP  FARKF+  
Sbjct: 416 RITNWN-------RKLGCKCQYKHIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKFEAI 468

Query: 330 -NSPVLDKID 338
            N  ++ ++D
Sbjct: 469 VNQEIIGQLD 478
Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 6
>sp|Q5QQ56|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1 Back     alignment and function description
>sp|Q5QQ50|XYLT2_CANFA Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 PE=2 SV=1 Back     alignment and function description
>sp|Q5QQ57|XYLT1_PANTR Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1 Back     alignment and function description
>sp|Q86Y38|XYLT1_HUMAN Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1 Back     alignment and function description
>sp|Q5QQ49|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT2 PE=2 SV=1 Back     alignment and function description
>sp|Q9H1B5|XYLT2_HUMAN Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2 Back     alignment and function description
>sp|Q5QQ51|XYLT2_PANTR Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1 Back     alignment and function description
>sp|Q9EPL0|XYLT2_MOUSE Xylosyltransferase 2 OS=Mus musculus GN=Xylt2 PE=2 SV=3 Back     alignment and function description
>sp|Q811B1|XYLT1_MOUSE Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
60657604397 secondary cell wall-related glycosyltran 0.982 0.997 0.752 0.0
356571785399 PREDICTED: xylosyltransferase 1-like [Gl 0.987 0.997 0.730 1e-177
357508863399 Xylosyltransferase [Medicago truncatula] 0.990 1.0 0.704 1e-170
356560347391 PREDICTED: xylosyltransferase 1-like [Gl 0.960 0.989 0.721 1e-169
224123904363 predicted protein [Populus trichocarpa] 0.900 1.0 0.714 1e-165
449453814401 PREDICTED: xylosyltransferase 1-like [Cu 0.895 0.900 0.735 1e-163
225439217391 PREDICTED: xylosyltransferase 1-like [Vi 0.885 0.913 0.755 1e-161
297833046378 hypothetical protein ARALYDRAFT_317250 [ 0.928 0.989 0.65 1e-142
15228609378 Core-2/I-branching beta-1,6-N-acetylgluc 0.851 0.907 0.690 1e-139
13605509378 AT3g03690/T12J13_3 [Arabidopsis thaliana 0.851 0.907 0.687 1e-139
>gi|60657604|gb|AAX33323.1| secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/404 (75%), Positives = 352/404 (87%), Gaps = 8/404 (1%)

Query: 1   MGIKVFVTLFMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAY 60
           MGIK+F+  FM+TS+    +YI  P K  T + K+NP+I     + +  +   YPVTFAY
Sbjct: 1   MGIKLFMISFMVTSILFSLLYI--PTKLTTPIAKYNPVI----NLNMLKDLKPYPVTFAY 54

Query: 61  LLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYI 120
           L+SAS+GD  +L R L ALYHPGN+YLIH+D +APEKE REIAEFV+++PVF +V NV+I
Sbjct: 55  LISASRGDAKRLMRVLKALYHPGNYYLIHVDSDAPEKEHREIAEFVSSDPVFGLVGNVWI 114

Query: 121 VGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRD 180
           VGKPNLVTYRGPTMLATTLHA+A+LLR CKWDWFINLSASDYPLVTQDDLI+AFS LPR+
Sbjct: 115 VGKPNLVTYRGPTMLATTLHAMAILLRTCKWDWFINLSASDYPLVTQDDLIDAFSTLPRN 174

Query: 181 LNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILS 240
           LNFIQHSS LGWK+NKRAKPI+IDPGLYSLNKSEIWWVIKQRS+P+AFKLYTGSAWTILS
Sbjct: 175 LNFIQHSSRLGWKLNKRAKPIMIDPGLYSLNKSEIWWVIKQRSLPTAFKLYTGSAWTILS 234

Query: 241 RPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTP 300
           R FAEY I+GWDNLPR+LLLYYTNFVSSPEGYFQTVICNSEDYKNTT NHDLHYITWDTP
Sbjct: 235 RSFAEYSIVGWDNLPRTLLLYYTNFVSSPEGYFQTVICNSEDYKNTTVNHDLHYITWDTP 294

Query: 301 PKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSES-E 359
           PKQHPRSLG+KD+RRM+LSSRPFARKFK+N PVLDKIDR+LLKR++ ++ +GGWC+ S +
Sbjct: 295 PKQHPRSLGVKDYRRMILSSRPFARKFKRNDPVLDKIDRELLKRYKGQFAHGGWCARSGK 354

Query: 360 RDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQCR 403
           R   CSG Q+ NYGVLRPGPGSRRL+NLLTKL+  +NF KRQCR
Sbjct: 355 RHGTCSGLQNGNYGVLRPGPGSRRLQNLLTKLLPEKNF-KRQCR 397

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356571785|ref|XP_003554053.1| PREDICTED: xylosyltransferase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357508863|ref|XP_003624720.1| Xylosyltransferase [Medicago truncatula] gi|355499735|gb|AES80938.1| Xylosyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356560347|ref|XP_003548454.1| PREDICTED: xylosyltransferase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224123904|ref|XP_002319193.1| predicted protein [Populus trichocarpa] gi|222857569|gb|EEE95116.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449453814|ref|XP_004144651.1| PREDICTED: xylosyltransferase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225439217|ref|XP_002270685.1| PREDICTED: xylosyltransferase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297833046|ref|XP_002884405.1| hypothetical protein ARALYDRAFT_317250 [Arabidopsis lyrata subsp. lyrata] gi|297330245|gb|EFH60664.1| hypothetical protein ARALYDRAFT_317250 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15228609|ref|NP_187019.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi|6091754|gb|AAF03464.1|AC009327_3 hypothetical protein [Arabidopsis thaliana] gi|332640451|gb|AEE73972.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|13605509|gb|AAK32748.1|AF361580_1 AT3g03690/T12J13_3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2096399378 UNE7 "unfertilized embryo sac 0.848 0.904 0.692 3.4e-141
TAIR|locus:2178047447 AT5G39990 [Arabidopsis thalian 0.982 0.885 0.531 8.8e-118
TAIR|locus:2124009421 AT4G27480 [Arabidopsis thalian 0.870 0.833 0.571 4.5e-114
TAIR|locus:2147880434 AT5G15050 [Arabidopsis thalian 0.908 0.843 0.563 5.2e-113
TAIR|locus:2087125424 AT3G15350 [Arabidopsis thalian 0.846 0.804 0.581 5.3e-111
TAIR|locus:2125502448 AT4G03340 [Arabidopsis thalian 0.885 0.796 0.554 7.8e-110
TAIR|locus:2020748447 AT1G03520 [Arabidopsis thalian 0.853 0.769 0.564 1.6e-109
TAIR|locus:2037065423 AT1G53100 [Arabidopsis thalian 0.970 0.924 0.515 2e-104
TAIR|locus:505006303384 AT2G37585 [Arabidopsis thalian 0.791 0.830 0.525 3.8e-95
TAIR|locus:2026356395 AT1G71070 [Arabidopsis thalian 0.873 0.891 0.439 3.7e-87
TAIR|locus:2096399 UNE7 "unfertilized embryo sac 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1300 (462.7 bits), Expect = 3.4e-141, Sum P(2) = 3.4e-141
 Identities = 241/348 (69%), Positives = 287/348 (82%)

Query:     1 MGIKVFVTL-FMLTSVFLCFVYISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFA 59
             M IK  + + F LTS+    +YI    K   +  K   + + SN+    ++NS+ P  FA
Sbjct:     1 MAIKKLLMISFSLTSLLFSLLYIIPTTKTLFTSSKIPSLPLESNQ----NSNSTLPC-FA 55

Query:    60 YLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVY 119
             YL+SASKGD  KLKR L +LYH  NHYLIH+D EAPE+E  E+  FVA EP+F+   NV 
Sbjct:    56 YLISASKGDAGKLKRLLRSLYHRRNHYLIHLDLEAPEEEHLEMIRFVAGEPLFQPEGNVM 115

Query:   120 IVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPR 179
             IVGKPNLVTYRGPTMLATTLHA+A+LLRCC+WDWFINLSASDYPLVTQDDLI AFS+LPR
Sbjct:   116 IVGKPNLVTYRGPTMLATTLHAMALLLRCCRWDWFINLSASDYPLVTQDDLIYAFSELPR 175

Query:   180 DLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTIL 239
             DLNFIQH+S LGWKMNKR KPIIIDPGLYSLNKSEIWWV  QRS+P++FKL+TGSAWT L
Sbjct:   176 DLNFIQHTSRLGWKMNKRGKPIIIDPGLYSLNKSEIWWVSNQRSLPTSFKLFTGSAWTFL 235

Query:   240 SRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDT 299
             SRPFAEYCI+G+DNLPR+LLLYYTNFVSSPEGYFQT+ICNS+++KNTT NHDLHYI WD 
Sbjct:   236 SRPFAEYCIIGYDNLPRTLLLYYTNFVSSPEGYFQTLICNSDEFKNTTVNHDLHYIAWDN 295

Query:   300 PPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRR 347
             PPKQHP+ LG +D+R+MV+S+RPFARKFK N PVL++IDR++L+R R+
Sbjct:   296 PPKQHPKILGTRDYRKMVMSNRPFARKFKSNDPVLNRIDREILRRKRK 343
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008375 "acetylglucosaminyltransferase activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP
GO:0048868 "pollen tube development" evidence=IMP
TAIR|locus:2178047 AT5G39990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124009 AT4G27480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147880 AT5G15050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087125 AT3G15350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125502 AT4G03340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020748 AT1G03520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037065 AT1G53100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006303 AT2G37585 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026356 AT1G71070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.2LOW CONFIDENCE prediction!
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.2.26LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XIII0301
hypothetical protein (363 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
PLN03183421 PLN03183, PLN03183, acetylglucosaminyltransferase 1e-177
pfam02485242 pfam02485, Branch, Core-2/I-Branching enzyme 1e-75
>gnl|CDD|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein; Provisional Back     alignment and domain information 
 Score =  501 bits (1291), Expect = e-177
 Identities = 210/347 (60%), Positives = 263/347 (75%), Gaps = 6/347 (1%)

Query: 58  FAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNN 117
           FAYL+S SKGD  KL R L ALYHP N Y++H+D E+P +E+ E+A  V N+P+F  V N
Sbjct: 80  FAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGN 139

Query: 118 VYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSD 176
           VY++ K NLVTYRGPTM+A TLHA A+LL+  K WDWFINLSASDYPLVTQDDLI  FS 
Sbjct: 140 VYMITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFST 199

Query: 177 LPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAW 236
           L R+LNFI+H+S LGWK  KRA P+IIDPGLYS NKS+I+WV  +RS+P+AFKL+TGSAW
Sbjct: 200 LDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRRSLPTAFKLFTGSAW 259

Query: 237 TILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYIT 296
            +LSR F EYCI GWDNLPR+LL+YYTNFVSSPEGYF TVICN  ++  T  NHDLHYI+
Sbjct: 260 MVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYIS 319

Query: 297 WDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCS 356
           WD PPKQHP +L L D  +M+ S   FARKF+++ PVLDKID++LL R    +T GGWCS
Sbjct: 320 WDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCS 379

Query: 357 ESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQCR 403
              +   CS  +  +   ++PGPG++RLK L+++L+      + QC+
Sbjct: 380 GKPK---CS--RVGDPAKIKPGPGAQRLKGLVSRLVLEAKLGQNQCK 421

Length = 421
>gnl|CDD|217062 pfam02485, Branch, Core-2/I-Branching enzyme Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
PLN03183421 acetylglucosaminyltransferase family protein; Prov 100.0
KOG0799439 consensus Branching enzyme [Carbohydrate transport 100.0
PF02485244 Branch: Core-2/I-Branching enzyme; InterPro: IPR00 100.0
TIGR03469384 HonB hopene-associated glycosyltransferase HpnB. T 93.59
TIGR03472373 HpnI hopanoid biosynthesis associated glycosyl tra 90.46
PRK11204420 N-glycosyltransferase; Provisional 88.29
TIGR03111439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 88.04
cd02525249 Succinoglycan_BP_ExoA ExoA is involved in the bios 85.22
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 80.88
PRK14583444 hmsR N-glycosyltransferase; Provisional 80.81
PRK10063248 putative glycosyl transferase; Provisional 80.14
>PLN03183 acetylglucosaminyltransferase family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-115  Score=887.05  Aligned_cols=397  Identities=54%  Similarity=0.976  Sum_probs=364.6

Q ss_pred             CccchhHHHHHHHHHHHHHHHhcCCc-ccCCCC--------------CCCCccccccccccC---CCCCCCCCeEEEEEE
Q 015651            2 GIKVFVTLFMLTSVFLCFVYISTPAK-RFTSLY--------------KFNPIIMTSNKITLK---SNNSSYPVTFAYLLS   63 (403)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~~kiAYLI~   63 (403)
                      +++||++|++++++++++|+++++++ +.++.+              +.+.+.++++++.++   .+.++.||||||||+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~   85 (421)
T PLN03183          6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS   85 (421)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence            57999999999999998876643321 111110              112234566655531   234556999999999


Q ss_pred             ecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHHHHHHHH
Q 015651           64 ASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIA  143 (403)
Q Consensus        64 ~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~  143 (403)
                      ||+||.+|++|||++||||+|+||||+|+||+..++.++++.++.+|++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus        86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~  165 (421)
T PLN03183         86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA  165 (421)
T ss_pred             ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence            99889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCC-CcEEEeccCCceeccchhhHHHHHccCCCCcceEecccCCCccccccccccccCCCccccCCcceeeeeecC
Q 015651          144 MLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQR  222 (403)
Q Consensus       144 ~lL~~~~-wdyfi~LSgsDyPL~t~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~~~i~dpgly~~~k~~~~~~~~kR  222 (403)
                      .||+.+. |||||||||+||||+||+||++.|+++|+|+|||++++..+|++.+|+++++++||+|..+++.++|.+++|
T Consensus       166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R  245 (421)
T PLN03183        166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR  245 (421)
T ss_pred             HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence            9999877 999999999999999999988877788999999999988999999999999999999988888889999999


Q ss_pred             CCCCCceeeeccceeeecHhHHHHcccccCCChHHHHHHhcCCCCCCCchhhhHhhcCCCCCcccccCceeeEecCCCCC
Q 015651          223 SIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPK  302 (403)
Q Consensus       223 ~~P~~~~l~~GS~W~~LsR~fvey~i~~~d~lpr~ll~yf~~~~~pdE~fFqTvl~Ns~~f~~t~vn~nLRyi~W~~~~~  302 (403)
                      .+|.++++|+||+|++|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|+++++
T Consensus       246 ~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~~  325 (421)
T PLN03183        246 SLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPPK  325 (421)
T ss_pred             cCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCCHHHHHHHhcCCCcEEeccCCChHHHHHHHHHHhcccCCCcccCccccCCCCCCCccccccCCCCcccCCchhH
Q 015651          303 QHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSR  382 (403)
Q Consensus       303 ~~P~~L~~~D~~~l~~S~a~FARKF~~d~~lld~Id~~ll~r~~~~~~~g~w~~~~~~~~~~c~~~g~~~~~~~pg~~~~  382 (403)
                      +||++|+.+||++|++|+++|||||+.|++|||+||+++++|..++++|||||.|    .||||++||+ ++|||||||+
T Consensus       326 ~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~----~~~c~~~~~~-~~~~p~~~~~  400 (421)
T PLN03183        326 QHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG----KPKCSRVGDP-AKIKPGPGAQ  400 (421)
T ss_pred             CCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC----CCcccccCCc-CccCCCcHHH
Confidence            9999999999999999999999999999999999999999999999999999987    5699999999 9999999999


Q ss_pred             HHHHHHHHhhcccCCcCCCCC
Q 015651          383 RLKNLLTKLISARNFTKRQCR  403 (403)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~c~  403 (403)
                      ||++||++||++++||++||+
T Consensus       401 ~~~~~~~~~~~~~~~~~~~c~  421 (421)
T PLN03183        401 RLKGLVSRLVLEAKLGQNQCK  421 (421)
T ss_pred             HHHHHHHHHhchhccccccCC
Confidence            999999999999999999996

>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB Back     alignment and domain information
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information
>PRK14583 hmsR N-glycosyltransferase; Provisional Back     alignment and domain information
>PRK10063 putative glycosyl transferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
3otk_A391 Structure And Mechanisim Of Core 2 Beta1,6-N- Acety 6e-08
2gak_A391 X-ray Crystal Structure Of Murine Leukocyte-type Co 2e-07
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase Length = 391 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 46/304 (15%)
Query: 72  LKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131
           L R L A+Y P N Y IH+DR+A E      +   A + +    +NV++  +   V Y  
Sbjct: 99  LDRLLRAIYMPQNFYCIHVDRKAEE------SFLAAVQGIASCFDNVFVASQLESVVYAS 152
Query: 132 PTMLATTLHAIAMLLRC-CKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHL 190
            T +   L+ +  L R    W + INLS  D+P+ T  +++        + N        
Sbjct: 153 WTRVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPP 212
Query: 191 GWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMG 250
             +   + +  ++D  L +         I +   P    L++GSA+ +++R +  Y ++ 
Sbjct: 213 NKEERWKKRYAVVDGKLTNTG-------IVKAPPPLKTPLFSGSAYFVVTREYVGY-VLE 264
Query: 251 WDNLPRSLLLYYTNFVSSPEGYFQTVIC----------NSEDYKNTTANHDLHYITWD-- 298
            +N+ +  L+ +     SP+ +    I           +S  Y  +  N    ++ W   
Sbjct: 265 NENIQK--LMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYF 322
Query: 299 ---------TPPKQ--HPRSL---GLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKR 344
                     PP    H RS+   G  D   M+     FA KF  +   +D      L  
Sbjct: 323 EGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMD---VDPFAIQCLDE 379
Query: 345 HRRR 348
           H RR
Sbjct: 380 HLRR 383
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2 B1,6-n- Acetylglucosaminyltransferase (c2gnt-l) Length = 391 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 9e-60
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391 Back     alignment and structure
 Score =  198 bits (503), Expect = 9e-60
 Identities = 64/327 (19%), Positives = 116/327 (35%), Gaps = 47/327 (14%)

Query: 46  TLKSNNSSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEF 105
            L      +P+  AY +         L R L A+Y P N Y IH+DR+A E     +   
Sbjct: 76  PLTKEEVGFPI--AYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAV--- 129

Query: 106 VANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLR-CCKWDWFINLSASDYPL 164
              + +    +NV++  +   V Y   T +   L+ +  L R    W + INL   D+P+
Sbjct: 130 ---QGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPI 186

Query: 165 VTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQRSI 224
            T  +++        + N          +   + +  ++D  L +         I +   
Sbjct: 187 KTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTG-------IVKAPP 239

Query: 225 PSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSED-- 282
           P    L++GSA+ +++R +  Y +   +N     L+ +     SP+ +    I    +  
Sbjct: 240 PLKTPLFSGSAYFVVTREYVGYVL---ENENIQKLMEWAQDTYSPDEFLWATIQRIPEVP 296

Query: 283 --------YKNTTANHDLHYITWD-----------TPPKQHPRS-----LGLKDFRRMVL 318
                   Y  +  N    ++ W             PP            G  D   M+ 
Sbjct: 297 GSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLR 356

Query: 319 SSRPFARKFKQN-SPVLDKIDRDLLKR 344
               FA KF  +  P   +   + L+R
Sbjct: 357 QHHLFANKFDMDVDPFAIQCLDEHLRR 383
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 100.0
3bcv_A240 Putative glycosyltransferase protein; protein stru 84.02
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-64  Score=512.64  Aligned_cols=278  Identities=22%  Similarity=0.336  Sum_probs=238.8

Q ss_pred             CCCCCeEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecC
Q 015651           52 SSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG  131 (403)
Q Consensus        52 ~~~~~kiAYLI~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg  131 (403)
                      ++.+++|||+|++|+ |+++++||++++|||+|.||||+|+||+..++..+...      ..+++||+|++++..|.|||
T Consensus        80 ~e~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~------~~~f~NV~v~~~~~~v~WGg  152 (391)
T 2gak_A           80 EEVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGI------ASCFDNVFVASQLESVVYAS  152 (391)
T ss_dssp             HHHTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHH------HHTCTTEEECSSCCCCCTTS
T ss_pred             cccCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHH------HhcCCCEEEeccCcccccCC
Confidence            345699999999998 99999999999999999999999999999877776542      34799999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCC-CcEEEeccCCceeccchhhHHHHHccCCCCcceEecccCCCcccccccc--ccccCCCcc
Q 015651          132 PTMLATTLHAIAMLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAK--PIIIDPGLY  208 (403)
Q Consensus       132 ~S~V~AtL~~~~~lL~~~~-wdyfi~LSgsDyPL~t~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~--~~i~dpgly  208 (403)
                      +|||+||++||+.||+.+. |||||||||+||||+|+++|+++|+.+ +++|||++....+|++. |++  +...+++++
T Consensus       153 ~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l~  230 (391)
T 2gak_A          153 WTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEE-RWKKRYAVVDGKLT  230 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSH-HHHEEEEEETTEEE
T ss_pred             chHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCccccc-ceEeeeecccccee
Confidence            9999999999999999875 999999999999999999999999875 67999999988888763 432  333343322


Q ss_pred             ccCCcceeeeeecCCCCCCceeeeccceeeecHhHHHHcccccCCChHHHHHHhcCCCCCCCchhhhHhhcC--------
Q 015651          209 SLNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNS--------  280 (403)
Q Consensus       209 ~~~k~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~d~lpr~ll~yf~~~~~pdE~fFqTvl~Ns--------  280 (403)
                             .+..++|.+|.++++++|||||+|||+||+||++  |++++.+++||+++++|||+||||++.|+        
T Consensus       231 -------~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~  301 (391)
T 2gak_A          231 -------NTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPS  301 (391)
T ss_dssp             -------EEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCS
T ss_pred             -------eecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCcccc
Confidence                   3456788899999999999999999999999998  66688899999999999999999998764        


Q ss_pred             -CCCCcccccCceeeEecCCCCC------CCCC----------CCCHHHHHHHhcCCCcEEeccCC--ChHHHHHHHHHH
Q 015651          281 -EDYKNTTANHDLHYITWDTPPK------QHPR----------SLGLKDFRRMVLSSRPFARKFKQ--NSPVLDKIDRDL  341 (403)
Q Consensus       281 -~~f~~t~vn~nLRyi~W~~~~~------~~P~----------~L~~~D~~~l~~S~a~FARKF~~--d~~lld~Id~~l  341 (403)
                       ..|+++++|+++|||+|+++.+      .||.          +|+.+|++.|.+|+++|||||++  |++|++|||+.|
T Consensus       302 ~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~l  381 (391)
T 2gak_A          302 SNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHL  381 (391)
T ss_dssp             SGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHHH
T ss_pred             ccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHHH
Confidence             2345667899999999985221      2444          89999999999999999999997  789999999999


Q ss_pred             hcccCC
Q 015651          342 LKRHRR  347 (403)
Q Consensus       342 l~r~~~  347 (403)
                      .+|...
T Consensus       382 ~~r~~~  387 (391)
T 2gak_A          382 RRKALE  387 (391)
T ss_dssp             HHHHHC
T ss_pred             hhhhhc
Confidence            888654
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d1qg8a_255 Spore coat polysaccharide biosynthesis protein Sps 86.28
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=86.28  E-value=1.3  Score=37.69  Aligned_cols=115  Identities=9%  Similarity=0.108  Sum_probs=67.4

Q ss_pred             CeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceee---e
Q 015651           56 VTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVT---Y  129 (403)
Q Consensus        56 ~kiAYLI~~hk~d~~~l~rLl~aLy---hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~---w  129 (403)
                      |++..+|.+++ ....|++.|+.+-   .+...++| +|-.|++...+.|+++.       ...+|+++.......   -
T Consensus         1 P~vSiiip~yN-~~~~l~~~l~Si~~Qt~~~~eiiv-vdd~S~d~t~~~l~~~~-------~~~~i~~~~~~~~~~~~~~   71 (255)
T d1qg8a_           1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSDFELFI-MDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERT   71 (255)
T ss_dssp             CCEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEEEE-EECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHH
T ss_pred             CEEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHHHHHhh-------hhccccccccccccccccc
Confidence            68899999998 5778888888874   24334444 45456676665555432       335677765432110   0


Q ss_pred             cCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccc-hhhHHHHHccCCCCcceE
Q 015651          130 RGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFSDLPRDLNFI  184 (403)
Q Consensus       130 gg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t-~~~i~~~fs~~~~~~nFI  184 (403)
                      ...+.- +   ++..+++...-||++.|.+.|++... .+.+..+|... .+..++
T Consensus        72 ~~~g~~-~---a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~-~~~~~v  122 (255)
T d1qg8a_          72 EKTRYA-A---LINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTH-PEKAVI  122 (255)
T ss_dssp             SSCHHH-H---HHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHC-TTCCEE
T ss_pred             ccchhc-c---cccccccccccccccccccccccccchHHHHHHHHHhC-CCCCeE
Confidence            111211 1   22234454557999999999999754 34455566543 345555