Citrus Sinensis ID: 015654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MLTIFHDSLANFAVKTFFEIVIVHEFSIDLQLPLVNLCLLLLLQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHccccccccccccccHHccccccccHHHHcccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHHHHHHHEEEEEEEEEEEccccccccccEEEEccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccEEEcHHHHHHHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEcc
Coil and Loop (DISEMBL)
MLTIFHDSLANFAVKTFFEIVIVHEFSIDLQLPLVNLCLLLLLQRNFiqngqgsisksnskkvsgkNFIKNRTKEFSQGfqkshfhqmhngkrkfgfyndqkpkghgngkAIKFGlanqmnqpqekKRKSLALTYTEQEVKQWCEERrknyptkaninkkltekqsnsdvIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENtmplnkrgrfqnnydkrgrykrkdqfskeqkladkdssntssfnkkkPTLLQKLLSADVKRDKSHLLQTFRFMAINSffkdwpekpvnfplvmvkdggaageVVEEKSlllgeedsegkgRRMVEHfehdenrermhhniqgfedenddeeedndngEQMKVYIAgkgntndehvrleeeegeiid
Flexible Loop (DISEMBL)
mltifhdsLANFAVKTFFEIVIVHEFSIDLQLPLVNLCLLLLLQRNFIQngqgsisksnskkvsgKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGlanqmnqpqekKRKSLALTYTEQEVKqwceerrknyptkaninkkltekqsnsdviDKEAKMRREQLKEILAKqaelgvevaeipsyylldskkqVRARventmplnkrgrfqnnydkrgrykrkdqfskeqkladkdssntssfnkkkptLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVeekslllgeedsegkgrRMVEHfehdenrermhhniqgfedenddeeEDNDNGEQMKVYIagkgntndehvrleeeegeiid
Low Complexity Region (SEG)
MLTIFHDSLANFAVKTFFEIVIVHEFSIDlqlplvnlclllllQRNFIQNGQgsisksnskkvsgknFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFedenddeeedndnGEQMKVYIAGKGNTNDEHVRLEEEEGEIID
Disordered region (IsUnstruct)
**TIFHDSLANFAVKTFFEIVIVHEFSIDLQLPLVNLCLLLLLQRNFIQ*********************************************************************************************W*****************************************ILAKQAELGVEVAEIPSYYLLDS********************************************************************V*RDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEV***********************************************************************************
Disordered Region (DISOPRED)
**T****SLANFAVKTFFEIVIVHEFSIDLQLPLVNLCLLL************************************************************************************************QEVKQWCEERRKNYP*********************************************************************************************************************KLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLV**************************************************************************************E****I**
Disordered Region (DISEMBL)
MLTIFHDSLANFAVKTFFEIVIVHEFSIDLQLPLVNLCLLLLLQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRY************************KKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFED***********GEQMKVYIAGKGNTNDEHVRL*********
Disordered Region (DISPRO)
MLTIFHDSLANFAVKTFFEIVIVHEFSIDLQLPLVNLCLLLLLQRNFIQN****************************************************************************KRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLT*****SDVIDKEAKMRREQLKEILAKQAELGVEVAEIPS*YL*********************************************************KKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEE***GKGRRMVEHFEH***********************DNDNGEQMKVYIAGKGNTNDEHVRLEEEE**II*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTIFHDSLANFAVKTFFEIVIVHEFSIDLQLPLVNLCLLLLLQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVYIAGKGNTNDEHVRLEEEEGEIID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
224100559	659	predicted protein [Populus trichocarpa]	0.808	0.494	0.447	6e-70
147775405	605	hypothetical protein VITISV_043067 [Viti	0.746	0.497	0.507	8e-70
224113339	674	predicted protein [Populus trichocarpa]	0.816	0.488	0.451	1e-66
255554855	273	conserved hypothetical protein [Ricinus	0.540	0.798	0.576	2e-63
359487059	1031	PREDICTED: uncharacterized protein LOC10	0.600	0.234	0.540	2e-60
449446325	599	PREDICTED: uncharacterized protein LOC10	0.761	0.512	0.443	4e-60
449494110	552	PREDICTED: uncharacterized LOC101213190	0.769	0.561	0.446	5e-60
145334515	470	uncharacterized protein [Arabidopsis tha	0.786	0.674	0.432	1e-58
297807865	454	hypothetical protein ARALYDRAFT_488722 [	0.578	0.513	0.497	2e-56
356553962	822	PREDICTED: uncharacterized protein LOC10	0.836	0.409	0.418	3e-54

>gi|224100559|ref|XP_002311923.1| predicted protein [Populus trichocarpa] gi|222851743|gb|EEE89290.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 176/393 (44%), Positives = 223/393 (56%), Gaps = 67/393 (17%)

Query: 44  QRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQ-GFQKSHFHQMHNGKRKFGFYNDQK 102
           Q N  +NGQ S  KS  +K SGKN   NR +  SQ G QKS F+ M NGKRK  F N+  
Sbjct: 301 QGNTARNGQSSTPKSKWEKPSGKNLKNNRNRGRSQSGHQKSDFNCMDNGKRKLEFSNEHG 360

Query: 103 PKGHGNGKAIKFGLANQMNQPQEKKRK-SLALTYTEQEVKQWCEERRKNYPTKANINKKL 161
            KG+GN +  KFG  +  +Q  E+K K S    YTEQE+KQW E RRK+YPTK +I KK 
Sbjct: 361 RKGNGNERVAKFGRTDLTDQATEEKSKPSRTFFYTEQEIKQWRESRRKHYPTKTSIEKKQ 420

Query: 162 TEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDS-------------- 207
            E      VID+EA  R +QLKEILAKQAELGVEVAEIP  YLLDS              
Sbjct: 421 ME------VIDREANFRHKQLKEILAKQAELGVEVAEIPPDYLLDSEKLGVEVAEIPPPQ 474

Query: 208 -----------------KKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLA 250
                            +KQ   R +N   L K+G+F N +DKRGR+ +K + +K+   A
Sbjct: 475 VLSSEKLGVEVAEIPPPQKQEHGREDNRRSLTKKGKFWNKHDKRGRFNKKGRSAKQVGSA 534

Query: 251 DKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVM 310
           +++         +KPTLL+KLLS D+KRDK  LLQ FRFM  NSFFKDWPEKP+ FP V+
Sbjct: 535 NEE---------RKPTLLEKLLSTDIKRDKRQLLQVFRFMVANSFFKDWPEKPLKFPSVV 585

Query: 311 VKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFEDENDDEEED 370
           VK+ G   E+VE+KS L+GEE SE +   + E+F                  + DD  E 
Sbjct: 586 VKEDGYEDEIVEKKSSLVGEEVSEDRNNTIAENF-----------------GDRDDNIEH 628

Query: 371 NDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 403
           +   E    ++ GK +  DE  R+  EEGEI+D
Sbjct: 629 DAQVELGNCFVRGKCDIVDEVDRV--EEGEIVD 659

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775405|emb|CAN73830.1| hypothetical protein VITISV_043067 [Vitis vinifera]

 Score =  270 bits (690), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 161/317 (50%), Positives = 200/317 (63%), Gaps = 16/317 (5%)

Query: 44  QRNFIQNGQGSISKSNSKKVSGKNFIKN-RTKEFSQGFQKSHFHQMHNGKRKFGFYNDQK 102
           Q NF+++   + S  N K  S KNF+ N + K    G +KS  H M NG+ K G  N+ +
Sbjct: 250 QGNFVKDAGVNNSNPNWKNSSRKNFMXNPKGKNSHWGSRKSQLHHMQNGRGKAGISNENR 309

Query: 103 PKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLT 162
            KG  N  A      N   Q + +K++ L L YTEQE++ W EER+KNYP+K N+ KK  
Sbjct: 310 GKGLSNNMAGNLCRPNFTYQDKVEKKRPLPLNYTEQEIQNWREERKKNYPSKINLEKKSA 369

Query: 163 EKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDS-KKQVRARVENT-MP 220
           EK +NS+VI+ E K RR+QLKEILAKQAELGVEVAEIP +YL DS K+QV  R EN    
Sbjct: 370 EKLTNSEVIEAEVKSRRQQLKEILAKQAELGVEVAEIPPHYLSDSEKQQVHGREENNKKA 429

Query: 221 LNKRGRFQNNYDKRGRYKRK--------DQFSKEQKLADKDS-----SNTSSFNKKKPTL 267
             K+ RFQN  +KR R+ RK        D F+K+Q+LA  DS     SN    NKKK TL
Sbjct: 430 FGKKERFQNRGNKRRRHDRKQWQRHDQEDGFTKKQRLAGTDSGDTNASNQPPLNKKKQTL 489

Query: 268 LQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLL 327
           LQKLLS D+KRDK HLLQ FRFMA+NSFFKDWPEKP+ FPLV VK+ G  GEVV+ KS  
Sbjct: 490 LQKLLSTDIKRDKRHLLQVFRFMAMNSFFKDWPEKPLKFPLVAVKETGCQGEVVDRKSSP 549

Query: 328 LGEEDSEGKGRRMVEHF 344
             +   +G  +   E F
Sbjct: 550 TSKGVPQGGRKTXAEEF 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113339|ref|XP_002316461.1| predicted protein [Populus trichocarpa] gi|222865501|gb|EEF02632.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 185/410 (45%), Positives = 223/410 (54%), Gaps = 81/410 (19%)

Query: 44  QRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQ-GFQKSHFHQMHNGKRKFGFYNDQK 102
           Q N  +NGQGS   S     SGKNF  N  +E SQ G QKS FH+M NGKRK GF N   
Sbjct: 296 QGNPAKNGQGSTPNSKQGIFSGKNFKNNPKREQSQSGHQKSEFHRMDNGKRKLGFSNKHG 355

Query: 103 PKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLT 162
            KG GN +A KFG ++  NQ  E+KR  +   YTEQE+KQW E RRK++PTK NI KK T
Sbjct: 356 GKGKGNERAAKFGRSDPSNQVMEQKRTHI---YTEQEIKQWRESRRKHFPTKTNIEKKQT 412

Query: 163 EKQSNSDVIDKEAKMRRE-------------QLKEILAKQAELGVEVAEIPSYY------ 203
           EK  +S VIDKEA  RR+             QLKEILAKQAELGVEVAEIP  Y      
Sbjct: 413 EKLIDSGVIDKEANFRRKVLNALPRKLDDKLQLKEILAKQAELGVEVAEIPPEYMLDSEK 472

Query: 204 ------------------------------LLDSKKQVRARVENTMPLNKRGRFQNNYDK 233
                                         LLDS+KQ   R +N   L K+GRF N +D+
Sbjct: 473 LGVEVAETPLSYLLDSEKLGVEAAEIPPHHLLDSEKQEHGREDNRRSLTKKGRFWNKHDR 532

Query: 234 RGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAIN 293
           RGRYKRK +   +  L +++         +KPTLL+KLL AD+KRDK  LLQ FRFM  N
Sbjct: 533 RGRYKRKGRSDMQLGLENEE---------RKPTLLEKLLCADIKRDKHRLLQVFRFMVAN 583

Query: 294 SFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERM 353
           SFFKDW +KP+ FP V+VK+ G   E  EEK  L+GEE+SE      VE F         
Sbjct: 584 SFFKDWSDKPLKFPSVVVKEDGCKDEPQEEKPSLVGEEESEVPNNTTVEDF--------- 634

Query: 354 HHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 403
                    + DD +E +   E     + GK +  DE  R+  EEGEIID
Sbjct: 635 --------GDRDDGDEHDAQVEPGNGSVMGKCDIVDEVYRV--EEGEIID 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554855|ref|XP_002518465.1| conserved hypothetical protein [Ricinus communis] gi|223542310|gb|EEF43852.1| conserved hypothetical protein [Ricinus communis]

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/222 (57%), Positives = 169/222 (76%), Gaps = 4/222 (1%)

Query: 125 EKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKE 184
           +++ +S AL YTEQE+K W EERRKN+P+KANI K  +E+ +NS  IDKEAK+RRE+LKE
Sbjct: 5   QRENRSPALIYTEQEIKLWREERRKNFPSKANIEKMCSERVTNSGGIDKEAKLRRERLKE 64

Query: 185 ILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFS 244
           ILAKQAELGVEVAEIPS+YL DS+KQV+ + ++     K+GR ++ +D+RGRY +KD  +
Sbjct: 65  ILAKQAELGVEVAEIPSHYLSDSEKQVKVKKDSRRSAPKKGRSRHKHDRRGRYNKKDGLT 124

Query: 245 KEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPV 304
           ++  LA KDSSN SSF++ KPTLLQKLLSA+V++DK HLLQ FRFM +NSFF D PEKP+
Sbjct: 125 QQNTLAKKDSSNGSSFSRTKPTLLQKLLSAEVRKDKHHLLQVFRFMVMNSFFDDGPEKPL 184

Query: 305 NFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEH 346
            FP V+VK+     EVV EK+ + G+  SE   +  VE+  H
Sbjct: 185 KFPSVVVKE----DEVVAEKTSITGKGISEVSNKTAVENSGH 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487059|ref|XP_002271061.2| PREDICTED: uncharacterized protein LOC100252331 [Vitis vinifera]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/257 (54%), Positives = 170/257 (66%), Gaps = 15/257 (5%)

Query: 105 GHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEK 164
           G  N  A      N   Q + +K++ L L YTEQE++ W EER+KNYP+K N+ KK  EK
Sbjct: 738 GLSNNMAGNLCRPNFTYQDKVEKKRPLPLNYTEQEIQNWREERKKNYPSKINLEKKSAEK 797

Query: 165 QSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDS-KKQVRARVENT-MPLN 222
            +NS+VI+ E K RR+QLKEILAKQAELGVEVAEIP +YL DS K+QV  R EN      
Sbjct: 798 LTNSEVIEAEVKSRRQQLKEILAKQAELGVEVAEIPPHYLSDSEKQQVHGREENNKKAFG 857

Query: 223 KRGRFQNNYDKRGRYKRK--------DQFSKEQKLADKDS-----SNTSSFNKKKPTLLQ 269
           K+ RFQN  +KR R+ RK        D F+K+Q+LA KDS     SN    NKKK TLLQ
Sbjct: 858 KKERFQNRGNKRRRHDRKQWQRHDQEDGFTKKQRLAGKDSGDMNASNQPPLNKKKQTLLQ 917

Query: 270 KLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLG 329
           KLLS D+KRDK HLLQ FRFMA+NSFFKDWPEKP+ FPLV+VK+ G  GEVV+ KS    
Sbjct: 918 KLLSTDIKRDKRHLLQVFRFMAMNSFFKDWPEKPLKFPLVVVKETGCQGEVVDRKSSPTS 977

Query: 330 EEDSEGKGRRMVEHFEH 346
           +   +G  +   E F +
Sbjct: 978 KGVPQGGRKTAAEEFSN 994

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446325|ref|XP_004140922.1| PREDICTED: uncharacterized protein LOC101213190 [Cucumis sativus]

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 156/352 (44%), Positives = 214/352 (60%), Gaps = 45/352 (12%)

Query: 66  KNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQE 125
           +NF++N  K    GFQK+  H + N K+KFGF   QK KG  N +  KF   N  +Q +E
Sbjct: 279 RNFMRNSKK----GFQKNQTHHLKNEKKKFGFPGGQKEKGFHNERRNKFCGTNPTDQVKE 334

Query: 126 KKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEI 185
           +KR SL+L YT+QE++QW E RRKNYP+  NI KKLT KQ+N  ++DKEAK+ R++LKEI
Sbjct: 335 QKR-SLSLVYTDQEIRQWREARRKNYPSSTNIQKKLTGKQTNCTLVDKEAKLLRQELKEI 393

Query: 186 LAKQAELGVEVAEIPSYYLL-----DSKKQVRARV-------ENTMPLNKRGRFQNNYDK 233
           LAKQAELGVEVAEIP  YL      D++KQ   R        E ++   ++   QN  +K
Sbjct: 394 LAKQAELGVEVAEIPPEYLSYSEKHDNRKQRGGRSTLGEEAEEASI---EKENSQNRLNK 450

Query: 234 RGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAIN 293
           RGR K+K++  K+ K  +K  SN     K++PTLLQKLL ADV++DKS LLQ  RF  +N
Sbjct: 451 RGRCKKKNRPRKKGKF-EKHLSNKPPLKKREPTLLQKLLKADVRKDKSQLLQALRFTVMN 509

Query: 294 SFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEED-SEGKGRRMVEH-FEHDENRE 351
           SFFK+WP KP+ FP V VK+      VV+E SL  G  +  E     +VE+   HD    
Sbjct: 510 SFFKEWPNKPLKFPSVTVKENEGETNVVDETSLSTGNFNLQETNNNSLVENDGSHD---- 565

Query: 352 RMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 403
                    + +N+++ +D++  E++K    G G      +++ EEEGEIID
Sbjct: 566 --------IDSDNENDIKDSNKDEKLK----GDG------IQVLEEEGEIID 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494110|ref|XP_004159451.1| PREDICTED: uncharacterized LOC101213190 [Cucumis sativus]

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 156/349 (44%), Positives = 212/349 (60%), Gaps = 39/349 (11%)

Query: 66  KNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQE 125
           +NF++N  K    GFQK+  H + N K+KFGF   QK KG  N +  KF   N  +Q +E
Sbjct: 232 RNFMRNSKK----GFQKNQTHHLKNEKKKFGFPGGQKEKGFHNERRNKFCGTNPTDQVKE 287

Query: 126 KKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEI 185
           +KR SL+L YT+QE++QW E RRKNYP+  NI KKLT KQ+N  ++DKEAK+ R++LKEI
Sbjct: 288 QKR-SLSLVYTDQEIRQWREARRKNYPSSTNIQKKLTGKQTNCTLVDKEAKLLRQELKEI 346

Query: 186 LAKQAELGVEVAEIPSYYLL-----DSKKQVRARV----ENTMPLNKRGRFQNNYDKRGR 236
           LAKQAELGVEVAEIP  YL      D++KQ   R     E      ++   QN  +KRGR
Sbjct: 347 LAKQAELGVEVAEIPPEYLSYSEKHDNRKQRGGRSTLGEEAEEASIEKENSQNRLNKRGR 406

Query: 237 YKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFF 296
            K+K++  K+ K  +K  SN     K++PTLLQKLL ADV++DKS LLQ  RF  +NSFF
Sbjct: 407 CKKKNRPRKKGKF-EKHLSNKPPLKKREPTLLQKLLKADVRKDKSQLLQALRFTVMNSFF 465

Query: 297 KDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEED-SEGKGRRMVEH-FEHDENRERMH 354
           K+WP KP+ FP V VK+      VV+E SL  G  +  E     +VE+   HD       
Sbjct: 466 KEWPNKPLKFPSVTVKENEGETNVVDETSLSTGNFNLQETNNNSLVENDGSHD------- 518

Query: 355 HNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 403
                 + +N+++ +D++  E++K    G G      +++ EEEGEIID
Sbjct: 519 -----IDSDNENDIKDSNKDEKLK----GDG------IQVLEEEGEIID 552

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334515|ref|NP_001078603.1| uncharacterized protein [Arabidopsis thaliana] gi|145358174|ref|NP_197345.2| uncharacterized protein [Arabidopsis thaliana] gi|60547897|gb|AAX23912.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|71905555|gb|AAZ52755.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|71905557|gb|AAZ52756.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|332005180|gb|AED92563.1| uncharacterized protein [Arabidopsis thaliana] gi|332005181|gb|AED92564.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 150/347 (43%), Positives = 207/347 (59%), Gaps = 30/347 (8%)

Query: 2   LTIFHDSLANFAVKTFFEIVI-VHEFSIDLQLPLVNLCLLLLLQRNFIQNGQG------- 53
             + + +L   ++  FF+  +  H FS   QL   N  L      N  QN Q        
Sbjct: 108 FAVANSNLMGHSLPNFFQPSLEPHAFSSRPQLNSFN-SLPYPPVPNPHQNHQSGPPGFSE 166

Query: 54  ------SISKSNSKKVSGKNFIKNRTKE-----FSQGFQKSHFHQMHNGKRKFGFYNDQK 102
                 S+  +N    +G +F     K        QGFQ+   HQ  NGKRK GF  D +
Sbjct: 167 PRPQGQSVDNTNGSGPNGNDFRNKFPKHQNFKGPGQGFQRPQLHQADNGKRKSGFNKDHR 226

Query: 103 PKGHGNGKAIKFGL--ANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKK 160
             G GN   +K GL  ++  N  +EKKR S AL YT +EV+QW E RRKNYPTK  + KK
Sbjct: 227 --GKGNNNKMKTGLDGSDTGNIAKEKKR-SYALMYTPREVQQWREARRKNYPTKFLVEKK 283

Query: 161 LTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMP 220
           + +K  ++ ++D+EAKMRR+QL+E+LAKQAELGVEVAE+PS+YL ++ +QV     N   
Sbjct: 284 V-KKNVSASILDEEAKMRRQQLREVLAKQAELGVEVAEVPSHYLSNNDEQVNGDRGNNN- 341

Query: 221 LNKRGRFQNNYDKRGRYKRKDQF-SKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRD 279
             ++GRFQNN   + R+ RKD+F +K+ +L DK SS  SS   +KPTLL+KLLSAD+KRD
Sbjct: 342 -GRKGRFQNNRRNKRRHDRKDKFDNKKPRLEDKKSSQDSSITTRKPTLLEKLLSADIKRD 400

Query: 280 KSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSL 326
           KS LLQ FRFM +NS  K++PE+P+  PL+ VK+ G   + +E+ S+
Sbjct: 401 KSQLLQVFRFMVMNSLLKEFPEQPLKLPLITVKETGCE-DAMEDPSI 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807865|ref|XP_002871816.1| hypothetical protein ARALYDRAFT_488722 [Arabidopsis lyrata subsp. lyrata] gi|297317653|gb|EFH48075.1| hypothetical protein ARALYDRAFT_488722 [Arabidopsis lyrata subsp. lyrata]

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 170/239 (71%), Gaps = 6/239 (2%)

Query: 78  QGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGL-ANQMNQPQEKKRKSLALTYT 136
           QGFQ+   HQ  NGKRK GF  D +  G GN   +K GL  +  +   ++KR+S AL YT
Sbjct: 203 QGFQRPQLHQADNGKRKSGFNKDHR--GKGNYNKMKNGLDGSDADNIAKEKRRSYALMYT 260

Query: 137 EQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEV 196
            ++V QW E RRKN+PT+ N+ KK+ +K  ++ ++D+EAKMRR+QL+E+LAKQAELG+EV
Sbjct: 261 PKDVNQWREARRKNFPTRLNVEKKV-KKNVSASILDEEAKMRRQQLREVLAKQAELGIEV 319

Query: 197 AEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSN 256
           A++PS+YL ++ ++V    +N     ++ +FQNN  K+ R+ RKD+F K  +L DK+SS 
Sbjct: 320 ADVPSHYLSNTDERVHG--DNGANDGQKRKFQNNRHKQRRHGRKDKFDKTPRLDDKNSSQ 377

Query: 257 TSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGG 315
            S    KKPTLL+KLLSA++KRDK HLLQ FRFM +NSF K++PE+P+  PL+ V++ G
Sbjct: 378 ESPMTTKKPTLLEKLLSANIKRDKIHLLQVFRFMVMNSFLKEFPEQPLKLPLITVEETG 436

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553962|ref|XP_003545319.1| PREDICTED: uncharacterized protein LOC100786384 [Glycine max]

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/354 (41%), Positives = 212/354 (59%), Gaps = 17/354 (4%)

Query: 55  ISKSNSKKVSGKNFIKNRTKE--FSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAI 112
           +  SN K    KNF KN+     F  GFQKS FH ++NGK+  GF  +   KG  +G+  
Sbjct: 481 VPNSNWKGSPSKNF-KNKPNRGGFQAGFQKSKFHDVNNGKKGSGFPIEHNGKGPNSGRGG 539

Query: 113 KFGLANQMNQPQEKKR---KSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSD 169
            +GL     +P+E K+   +SL++TYT QE++QW E R+KN+P   NI KK +E   +  
Sbjct: 540 HYGL-----KPKEHKQQPERSLSVTYTVQEIQQWREARKKNHPFNNNIQKKHSEHPKDRK 594

Query: 170 VIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQN 229
            I++E   R  +LKE+LAKQAELGVEVAEIPSYYL +S  Q   + E       + +FQN
Sbjct: 595 AINREVLQR--ELKEVLAKQAELGVEVAEIPSYYLKNSDNQA-LQSEGKNKFTDKRKFQN 651

Query: 230 NYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRF 289
            ++K+    RK +F+K QK  DKD S + S  K+KPTLLQKLLS+DVKRDKSHL+Q FRF
Sbjct: 652 KFNKKS--DRKGRFAKRQKFDDKDFSESPSLKKRKPTLLQKLLSSDVKRDKSHLIQVFRF 709

Query: 290 MAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDEN 349
           M +NSFFK   +KP+ +PLV+VK+ G+  +  EEK L  G++  +G     V+      N
Sbjct: 710 MVMNSFFKHCLDKPLRYPLVVVKEKGSEVD-GEEKYLHTGKDVLKGGNEETVQKIVTFNN 768

Query: 350 RERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 403
                   +  +D+ +D   DN+  +     +  + ++ +   + +EEEGEII+
Sbjct: 769 DNSHDCEDEDSDDDENDSIVDNNLHKDPSSLVKRQCDSGEGIGKFDEEEGEIIE 822

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2146238	470	NUFIP "AT5G18440" [Arabidopsis	0.600	0.514	0.519	1.2e-60
ZFIN|ZDB-GENE-030131-6203	406	zgc:171476 "zgc:171476" [Danio	0.091	0.091	0.475	6.2e-06
RGD|1359440	486	Nufip1 "nuclear fragile X ment	0.215	0.179	0.350	7.2e-06
UNIPROTKB|Q9UHK0	495	NUFIP1 "Nuclear fragile X ment	0.141	0.115	0.446	8.5e-06
UNIPROTKB|J9P0P5	487	NUFIP1 "Uncharacterized protei	0.141	0.117	0.446	2.6e-05
UNIPROTKB|F1PK39	488	NUFIP1 "Uncharacterized protei	0.141	0.116	0.446	2.6e-05
UNIPROTKB|F1RJZ3	494	NUFIP1 "Uncharacterized protei	0.141	0.115	0.446	2.7e-05
UNIPROTKB|E1C0G7	360	NUFIP1 "Uncharacterized protei	0.084	0.094	0.459	4.7e-05
UNIPROTKB|E1C0G8	434	NUFIP1 "Uncharacterized protei	0.084	0.078	0.459	7.9e-05
UNIPROTKB|F1NXC7	464	NUFIP1 "Uncharacterized protei	0.084	0.073	0.459	9.4e-05

TAIR|locus:2146238 NUFIP "AT5G18440" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 131/252 (51%), Positives = 177/252 (70%)

Query:    78 QGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGL--ANQMNQPQEKKRKSLALTY 135
             QGFQ+   HQ  NGKRK GF  D +  G GN   +K GL  ++  N  +EKKR S AL Y
Sbjct:   202 QGFQRPQLHQADNGKRKSGFNKDHR--GKGNNNKMKTGLDGSDTGNIAKEKKR-SYALMY 258

Query:   136 TEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVE 195
             T +EV+QW E RRKNYPTK  + KK+ +K  ++ ++D+EAKMRR+QL+E+LAKQAELGVE
Sbjct:   259 TPREVQQWREARRKNYPTKFLVEKKV-KKNVSASILDEEAKMRRQQLREVLAKQAELGVE 317

Query:   196 VAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQF-SKEQKLADKDS 254
             VAE+PS+YL ++ +QV     N     ++GRFQNN   + R+ RKD+F +K+ +L DK S
Sbjct:   318 VAEVPSHYLSNNDEQVNGDRGNNN--GRKGRFQNNRRNKRRHDRKDKFDNKKPRLEDKKS 375

Query:   255 SNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDG 314
             S  SS   +KPTLL+KLLSAD+KRDKS LLQ FRFM +NS  K++PE+P+  PL+ VK+ 
Sbjct:   376 SQDSSITTRKPTLLEKLLSADIKRDKSQLLQVFRFMVMNSLLKEFPEQPLKLPLITVKET 435

Query:   315 GAAGEVVEEKSL 326
             G   + +E+ S+
Sbjct:   436 GCE-DAMEDPSI 446

GO:0003674 "molecular_function" evidence=ND

GO:0000491 "small nucleolar ribonucleoprotein complex assembly" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

ZFIN|ZDB-GENE-030131-6203 zgc:171476 "zgc:171476" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query:   136 TEQEVKQWCEERRKNYPTKANINKK--LTE-KQSNSDVID 172
             TE+++++W EERR+NYPT  N+ KK  L E K+   DV++
Sbjct:   143 TEEDIRRWREERRRNYPTLRNVEKKQKLMEVKEQRGDVLE 182

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|1359440 Nufip1 "nuclear fragile X mental retardation protein interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
 Identities = 34/97 (35%), Positives = 49/97 (50%)

Query:    78 QGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTE 137
             +GF+    + +H  + K     D     H   K ++F   N M+ P  KK K      T 
Sbjct:   174 RGFKNQEKYDIHMSEHKKCPEVDCSFSAHE--KIVQFHWRN-MHAPGMKKIK----LDTP 226

Query:   138 QEVKQWCEERRKNYPTKANIN-KKLT--EKQSNSDVI 171
             +++ +W EERRKNYPT ANI  KKL   EK+   +V+
Sbjct:   227 EDIARWREERRKNYPTLANIERKKLLQLEKEKRGEVL 263

GO:0000492 "box C/D snoRNP assembly" evidence=IEA;ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005726 "perichromatin fibrils" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0008023 "transcription elongation factor complex" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA;ISO

GO:0022626 "cytosolic ribosome" evidence=IEA;ISO

GO:0030515 "snoRNA binding" evidence=IEA;ISO

GO:0030674 "protein binding, bridging" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048786 "presynaptic active zone" evidence=IEA;ISO

GO:0070761 "pre-snoRNP complex" evidence=IEA;ISO

UNIPROTKB|Q9UHK0 NUFIP1 "Nuclear fragile X mental retardation-interacting protein 1" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:   110 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 166
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   211 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 265

Query:   167 NSDVI 171
                V+
Sbjct:   266 RGAVL 270

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=NAS

GO:0006396 "RNA processing" evidence=TAS

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005726 "perichromatin fibrils" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0008023 "transcription elongation factor complex" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000492 "box C/D snoRNP assembly" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0030515 "snoRNA binding" evidence=IDA

GO:0070761 "pre-snoRNP complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|J9P0P5 NUFIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:   110 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 166
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   208 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 262

Query:   167 NSDVI 171
                V+
Sbjct:   263 RGAVL 267

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PK39 NUFIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:   110 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 166
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   209 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 263

Query:   167 NSDVI 171
                V+
Sbjct:   264 RGAVL 268

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1RJZ3 NUFIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 101 (40.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query:   110 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 166
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   210 KIVQFHWRN-MHAPGVKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 264

Query:   167 NSDVI 171
             +  V+
Sbjct:   265 SGAVL 269

GO:0070761 "pre-snoRNP complex" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C0G7 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   138 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 171
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:    82 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 118

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C0G8 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   138 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 171
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:    82 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 118

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NXC7 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   138 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 171
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:   101 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 137

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IEA

GO:0070761 "pre-snoRNP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VIII000100 hypothetical protein (659 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
pfam10453	57	pfam10453, NUFIP1, Nuclear fragile X mental retard	7e-06

>gnl|CDD|220763 pfam10453, NUFIP1, Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 136 TEQEVKQWCEERRKNYPTKANINKKLTEKQSN 167
           T +E+ +W EER+KNYPTKANI KK   ++  
Sbjct: 20  TPEEIAKWIEERKKNYPTKANIEKKKKAEEER 51

Proteins in this family have been implicated in the assembly of the large subunit of the ribosome and in telomere maintenance. Some proteins in this family contain a CCCH zinc finger. This family contains a protein called human fragile X mental retardation-interacting protein 1, which is known to bind RNA and is phosphorylated upon DNA damage. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
PF10453	56	NUFIP1: Nuclear fragile X mental retardation-inter	99.1

>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []

Probab=99.10  E-value=7.9e-11  Score=90.84  Aligned_cols=31  Identities=61%  Similarity=0.901  Sum_probs=28.3

Q ss_pred             cccCHHHHHHHHHHHHhcCCChHHHHHHHHh
Q 015654          133 LTYTEQEVKQWCEERRKNYPTKANINKKLTE  163 (403)
Q Consensus       133 l~~t~~eI~~WreeRkKn~PT~anVe~K~~e  163 (403)
                      .++||+||++||+||||||||++||++|+++
T Consensus        16 ~L~t~eeI~~W~eERrk~~PT~~~i~~k~~~   46 (56)
T PF10453_consen   16 KLQTPEEIAKWIEERRKNYPTKANIEKKKAE   46 (56)
T ss_pred             ecCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            4479999999999999999999999988875

It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 58/479 (12%), Positives = 125/479 (26%), Gaps = 170/479 (35%)

Query: 1   MLTIFHDSLANFAVKTFFEIV-------IVHEFSIDLQLPLVNLCLLLLLQRNFIQNGQG 53
           +            V+ F E V       ++     + + P +    + + QR+ + N   
Sbjct: 67  LFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQ 124

Query: 54  SISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGF---------YNDQKPK 104
             +K N  ++     ++    E     +      +       G              K +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPA-KNVLIDGV------LGSGKTWVALDVCLSYKVQ 177

Query: 105 GHGNGKA--IKFG--------------LANQMNQP-QEKKRKSLALTYTEQEVKQWCEE- 146
              + K   +                 L  Q++     +   S  +      ++      
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 147 -RRKNYPT--------------KA-NINKKL---TEKQSNSDVIDKEAKMR--------- 178
            + K Y                 A N++ K+   T  +  +D +                
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 179 --REQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPL----------NKRGR 226
              +++K +L K   L     ++P              V  T P           +    
Sbjct: 298 LTPDEVKSLLLKY--LDCRPQDLPR------------EVLTTNPRRLSIIAESIRDGLAT 343

Query: 227 FQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQT 286
           +  N+    ++   D+ +   +         SS N  +P   +K+               
Sbjct: 344 WD-NW----KHVNCDKLTTIIE---------SSLNVLEPAEYRKM--------------- 374

Query: 287 FRFMAINSFFKD-----------WPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEG 335
           F  +++  F              W +   +  +V+V         + + SL+  E+    
Sbjct: 375 FDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNK-------LHKYSLV--EKQP-- 421

Query: 336 KGRRMVEH---FE---HDENRERMHHNI-------QGFEDENDDEEEDNDNGEQMKVYI 381
           K   +       E     EN   +H +I       + F D +D      D       Y 
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQ------YF 473

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00